Query 004753
Match_columns 732
No_of_seqs 1165 out of 3709
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 12:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 5E-137 1E-141 1065.8 52.2 666 1-680 251-965 (966)
2 COG3914 Spy Predicted O-linked 100.0 2E-98 4E-103 783.0 50.9 550 92-661 46-619 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 4E-91 8.8E-96 741.0 27.4 351 299-657 1-468 (468)
4 PRK15179 Vi polysaccharide bio 100.0 2E-31 4.4E-36 302.4 48.5 532 96-654 71-692 (694)
5 KOG4626 O-linked N-acetylgluco 100.0 6.6E-32 1.4E-36 282.3 24.4 266 1-275 217-482 (966)
6 TIGR00990 3a0801s09 mitochondr 99.9 6.6E-24 1.4E-28 245.5 36.8 271 2-275 127-493 (615)
7 TIGR00990 3a0801s09 mitochondr 99.9 7.1E-23 1.5E-27 236.9 36.7 247 3-249 161-503 (615)
8 PRK15174 Vi polysaccharide exp 99.9 4.3E-22 9.3E-27 230.1 37.2 273 2-276 76-379 (656)
9 KOG1126 DNA-binding cell divis 99.9 1.2E-23 2.5E-28 225.1 21.6 238 4-248 355-626 (638)
10 PRK11447 cellulose synthase su 99.9 4.9E-21 1.1E-25 235.8 37.8 268 6-275 355-697 (1157)
11 PRK11788 tetratricopeptide rep 99.9 7.9E-21 1.7E-25 208.1 35.6 267 3-275 36-308 (389)
12 PRK15174 Vi polysaccharide exp 99.9 3.6E-21 7.8E-26 222.4 34.2 247 2-248 110-387 (656)
13 PRK11447 cellulose synthase su 99.9 5.5E-21 1.2E-25 235.4 37.6 265 7-273 274-661 (1157)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-20 2.7E-25 228.2 37.8 268 3-274 602-896 (899)
15 KOG0547 Translocase of outer m 99.9 3.9E-21 8.5E-26 197.8 25.8 244 2-245 115-494 (606)
16 PRK11788 tetratricopeptide rep 99.9 5.8E-20 1.3E-24 201.3 36.0 270 3-280 70-349 (389)
17 KOG1126 DNA-binding cell divis 99.9 2.2E-21 4.8E-26 207.7 23.0 264 4-269 319-611 (638)
18 PRK09782 bacteriophage N4 rece 99.9 2.7E-20 5.8E-25 219.9 34.3 238 2-250 477-714 (987)
19 TIGR02917 PEP_TPR_lipo putativ 99.9 9.6E-20 2.1E-24 220.6 37.7 271 2-274 22-320 (899)
20 KOG1155 Anaphase-promoting com 99.9 6.3E-20 1.4E-24 188.0 29.6 263 6-268 231-526 (559)
21 KOG0547 Translocase of outer m 99.9 1.2E-20 2.5E-25 194.3 23.6 240 1-247 325-571 (606)
22 PRK09782 bacteriophage N4 rece 99.8 5.9E-19 1.3E-23 208.5 31.3 233 6-247 513-745 (987)
23 PRK12370 invasion protein regu 99.8 1.2E-18 2.5E-23 198.4 31.7 216 17-241 276-501 (553)
24 PRK10049 pgaA outer membrane p 99.8 1E-17 2.2E-22 197.8 36.2 272 3-278 84-456 (765)
25 KOG1155 Anaphase-promoting com 99.8 2.6E-18 5.5E-23 176.3 26.7 232 7-245 267-539 (559)
26 KOG1173 Anaphase-promoting com 99.8 2.4E-18 5.2E-23 180.8 25.4 235 11-252 287-528 (611)
27 PRK12370 invasion protein regu 99.8 9.3E-18 2E-22 191.0 31.8 224 39-264 261-490 (553)
28 PF13429 TPR_15: Tetratricopep 99.8 1.1E-19 2.3E-24 189.6 14.1 261 6-277 12-276 (280)
29 KOG1125 TPR repeat-containing 99.8 1.1E-18 2.5E-23 184.2 20.5 233 6-245 289-530 (579)
30 PRK11189 lipoprotein NlpI; Pro 99.8 1.4E-17 3E-22 174.3 27.5 224 15-250 39-274 (296)
31 PRK15490 Vi polysaccharide bio 99.8 2.6E-17 5.5E-22 179.1 30.0 266 367-655 270-575 (578)
32 TIGR02521 type_IV_pilW type IV 99.8 3.8E-17 8.2E-22 164.3 28.3 203 35-244 30-234 (234)
33 PRK10049 pgaA outer membrane p 99.8 9.5E-17 2.1E-21 189.5 35.9 121 3-131 50-170 (765)
34 KOG1129 TPR repeat-containing 99.8 3.7E-18 8E-23 167.7 19.4 240 6-253 227-469 (478)
35 TIGR02521 type_IV_pilW type IV 99.8 5.7E-17 1.2E-21 162.9 28.6 201 2-209 31-233 (234)
36 COG3063 PilF Tfp pilus assembl 99.8 8.1E-17 1.8E-21 152.3 24.8 207 36-249 35-243 (250)
37 PRK11189 lipoprotein NlpI; Pro 99.8 6.7E-17 1.4E-21 169.2 26.9 216 2-228 64-286 (296)
38 PF13429 TPR_15: Tetratricopep 99.8 1.7E-18 3.8E-23 180.5 14.1 231 3-242 45-277 (280)
39 KOG1173 Anaphase-promoting com 99.8 1.1E-16 2.4E-21 168.4 26.9 262 3-273 245-513 (611)
40 COG3063 PilF Tfp pilus assembl 99.8 1.8E-16 3.8E-21 150.1 25.2 208 2-216 35-244 (250)
41 KOG1840 Kinesin light chain [C 99.8 1.2E-16 2.5E-21 173.9 27.0 239 4-242 201-479 (508)
42 KOG2076 RNA polymerase III tra 99.8 6.9E-16 1.5E-20 170.5 32.4 260 4-272 141-506 (895)
43 KOG0624 dsRNA-activated protei 99.8 5.3E-16 1.2E-20 153.5 27.8 246 5-250 41-378 (504)
44 KOG2002 TPR-containing nuclear 99.8 3.4E-16 7.4E-21 173.8 28.8 256 1-262 306-577 (1018)
45 KOG2002 TPR-containing nuclear 99.8 3.6E-16 7.9E-21 173.6 28.8 268 4-278 166-442 (1018)
46 PLN02789 farnesyltranstransfer 99.8 6.9E-16 1.5E-20 161.2 28.6 219 3-226 38-268 (320)
47 KOG0548 Molecular co-chaperone 99.7 3.3E-16 7.1E-21 164.5 25.0 246 2-256 224-469 (539)
48 COG2956 Predicted N-acetylgluc 99.7 1.2E-15 2.6E-20 150.4 26.4 239 6-247 39-283 (389)
49 TIGR00540 hemY_coli hemY prote 99.7 6.9E-15 1.5E-19 161.5 34.7 261 5-275 87-396 (409)
50 KOG2003 TPR repeat-containing 99.7 9.7E-16 2.1E-20 156.2 25.1 229 17-252 471-699 (840)
51 PRK10747 putative protoheme IX 99.7 5.7E-15 1.2E-19 161.3 33.3 258 4-274 86-386 (398)
52 KOG2003 TPR repeat-containing 99.7 1E-15 2.2E-20 156.0 24.8 264 6-278 423-689 (840)
53 KOG1129 TPR repeat-containing 99.7 7.7E-16 1.7E-20 151.5 21.1 250 11-270 188-450 (478)
54 KOG1125 TPR repeat-containing 99.7 1.8E-16 3.8E-21 167.8 17.9 231 2-232 319-561 (579)
55 KOG0495 HAT repeat protein [RN 99.7 9.4E-15 2E-19 155.5 29.6 258 4-271 586-873 (913)
56 KOG0550 Molecular chaperone (D 99.7 5.1E-16 1.1E-20 157.6 18.3 244 2-245 49-353 (486)
57 KOG1174 Anaphase-promoting com 99.7 4.6E-15 9.9E-20 150.3 24.4 160 89-249 312-507 (564)
58 PLN02949 transferase, transfer 99.7 3E-15 6.4E-20 165.3 24.7 181 469-658 267-459 (463)
59 KOG0548 Molecular co-chaperone 99.7 1.3E-14 2.7E-19 152.7 27.4 110 151-260 304-439 (539)
60 TIGR03088 stp2 sugar transfera 99.7 4.9E-15 1.1E-19 161.4 24.5 327 300-656 3-373 (374)
61 TIGR00540 hemY_coli hemY prote 99.7 3.7E-14 8.1E-19 155.7 29.1 237 5-242 121-399 (409)
62 PLN02789 farnesyltranstransfer 99.7 1.7E-14 3.7E-19 150.8 24.2 211 36-252 37-260 (320)
63 PRK10747 putative protoheme IX 99.7 7.4E-14 1.6E-18 152.6 30.2 231 9-243 125-391 (398)
64 KOG2076 RNA polymerase III tra 99.7 1.6E-13 3.6E-18 151.9 32.5 265 2-273 173-550 (895)
65 PLN02871 UDP-sulfoquinovose:DA 99.6 6.5E-15 1.4E-19 164.9 21.2 346 296-663 56-442 (465)
66 PRK15427 colanic acid biosynth 99.6 3.9E-15 8.4E-20 163.2 18.8 175 468-656 220-406 (406)
67 KOG1840 Kinesin light chain [C 99.6 2.5E-14 5.4E-19 155.8 24.5 243 32-274 195-475 (508)
68 cd03792 GT1_Trehalose_phosphor 99.6 5.4E-14 1.2E-18 153.0 25.2 336 300-655 1-371 (372)
69 cd03796 GT1_PIG-A_like This fa 99.6 4.2E-14 9.1E-19 155.3 24.5 270 367-658 78-370 (398)
70 PRK14574 hmsH outer membrane p 99.6 4.2E-13 9E-18 156.2 33.8 187 2-196 34-220 (822)
71 PRK14574 hmsH outer membrane p 99.6 5.1E-13 1.1E-17 155.5 33.6 255 7-271 107-506 (822)
72 KOG1174 Anaphase-promoting com 99.6 1.6E-13 3.6E-18 139.2 25.2 262 7-277 203-466 (564)
73 COG2956 Predicted N-acetylgluc 99.6 2.7E-12 5.8E-17 127.1 31.1 236 3-247 70-316 (389)
74 cd03822 GT1_ecORF704_like This 99.6 9.2E-14 2E-18 150.1 22.5 334 300-654 1-366 (366)
75 cd03801 GT1_YqgM_like This fam 99.6 3E-14 6.4E-19 153.0 18.6 339 301-654 2-374 (374)
76 cd03820 GT1_amsD_like This fam 99.6 6.4E-14 1.4E-18 149.4 20.7 318 301-650 2-347 (348)
77 TIGR03302 OM_YfiO outer membra 99.6 2.3E-13 5E-18 138.0 22.8 112 2-113 33-151 (235)
78 cd03807 GT1_WbnK_like This fam 99.6 2.5E-13 5.4E-18 146.0 23.3 331 301-654 2-365 (365)
79 KOG4162 Predicted calmodulin-b 99.6 5.9E-13 1.3E-17 145.3 25.6 246 3-248 479-789 (799)
80 KOG0624 dsRNA-activated protei 99.6 6.8E-13 1.5E-17 131.8 23.7 213 32-251 34-261 (504)
81 cd05804 StaR_like StaR_like; a 99.6 3.7E-12 8E-17 137.7 31.6 205 2-210 6-217 (355)
82 TIGR03302 OM_YfiO outer membra 99.6 5.7E-13 1.2E-17 135.1 23.6 192 32-244 29-234 (235)
83 KOG0495 HAT repeat protein [RN 99.6 4.3E-12 9.3E-17 135.6 30.5 257 3-269 517-773 (913)
84 cd03806 GT1_ALG11_like This fa 99.6 5.3E-14 1.1E-18 154.9 17.0 171 468-647 235-418 (419)
85 PRK15359 type III secretion sy 99.6 9.9E-14 2.1E-18 128.7 15.6 122 132-256 14-135 (144)
86 cd05844 GT1_like_7 Glycosyltra 99.5 9.4E-14 2E-18 150.7 17.3 261 368-651 73-366 (367)
87 cd05804 StaR_like StaR_like; a 99.5 1.5E-12 3.2E-17 140.8 26.0 208 32-244 2-217 (355)
88 PRK15359 type III secretion sy 99.5 1.6E-13 3.5E-18 127.3 15.6 128 96-226 12-139 (144)
89 cd04962 GT1_like_5 This family 99.5 2.2E-13 4.7E-18 148.1 19.0 271 367-656 74-371 (371)
90 KOG1156 N-terminal acetyltrans 99.5 2.7E-12 5.8E-17 137.7 25.9 248 3-257 8-263 (700)
91 TIGR03449 mycothiol_MshA UDP-N 99.5 4.3E-13 9.3E-18 147.8 19.8 208 438-657 186-403 (405)
92 PLN03218 maturation of RBCL 1; 99.5 3.8E-11 8.2E-16 143.7 37.3 260 4-275 474-745 (1060)
93 cd03812 GT1_CapH_like This fam 99.5 6E-13 1.3E-17 143.7 20.2 314 301-633 2-345 (358)
94 PLN03218 maturation of RBCL 1; 99.5 4E-11 8.6E-16 143.6 37.3 262 3-276 508-781 (1060)
95 cd04951 GT1_WbdM_like This fam 99.5 2.7E-13 5.9E-18 146.4 17.2 327 303-654 4-359 (360)
96 PRK15484 lipopolysaccharide 1, 99.5 6.5E-13 1.4E-17 144.7 20.2 242 401-656 122-378 (380)
97 KOG1130 Predicted G-alpha GTPa 99.5 1.3E-13 2.9E-18 139.6 12.6 264 7-271 22-337 (639)
98 cd03805 GT1_ALG2_like This fam 99.5 3.7E-13 8E-18 147.5 17.4 174 466-649 207-392 (392)
99 cd03821 GT1_Bme6_like This fam 99.5 1.2E-12 2.6E-17 141.3 20.4 174 465-650 198-374 (375)
100 cd03813 GT1_like_3 This family 99.5 4.9E-13 1.1E-17 149.9 17.8 176 467-654 290-475 (475)
101 KOG1130 Predicted G-alpha GTPa 99.5 1.4E-13 2.9E-18 139.5 11.7 240 2-242 55-344 (639)
102 cd03811 GT1_WabH_like This fam 99.5 1.1E-12 2.4E-17 140.0 19.7 319 300-634 1-347 (353)
103 cd03799 GT1_amsK_like This is 99.5 2.6E-12 5.6E-17 138.5 22.7 326 301-648 2-354 (355)
104 PRK10370 formate-dependent nit 99.5 1.4E-12 3.1E-17 127.5 18.6 153 85-248 24-179 (198)
105 cd03817 GT1_UGDG_like This fam 99.5 4.7E-13 1E-17 144.5 16.9 172 466-655 198-373 (374)
106 cd03818 GT1_ExpC_like This fam 99.5 1.9E-12 4.1E-17 142.1 21.6 204 436-649 174-394 (396)
107 TIGR02472 sucr_P_syn_N sucrose 99.5 7.4E-13 1.6E-17 147.1 17.8 176 467-653 245-438 (439)
108 TIGR02918 accessory Sec system 99.5 2.3E-12 5E-17 143.8 21.7 167 471-655 320-499 (500)
109 KOG3060 Uncharacterized conser 99.5 1.3E-11 2.8E-16 118.6 23.5 179 83-261 58-239 (289)
110 PLN02846 digalactosyldiacylgly 99.5 1E-12 2.2E-17 143.1 17.3 262 365-655 104-391 (462)
111 PRK14720 transcript cleavage f 99.5 8.1E-12 1.8E-16 143.6 25.1 212 3-253 32-263 (906)
112 KOG4162 Predicted calmodulin-b 99.5 2.8E-11 6.1E-16 132.4 27.4 262 3-273 434-778 (799)
113 PRK10370 formate-dependent nit 99.5 6.7E-12 1.4E-16 122.8 20.5 154 43-214 23-179 (198)
114 PLN03081 pentatricopeptide (PP 99.5 2.2E-11 4.9E-16 143.4 28.4 262 4-277 261-556 (697)
115 PLN02501 digalactosyldiacylgly 99.4 1.1E-12 2.4E-17 144.6 15.2 261 365-652 422-706 (794)
116 PRK09922 UDP-D-galactose:(gluc 99.4 1.6E-12 3.6E-17 140.6 16.2 329 300-658 2-358 (359)
117 cd03798 GT1_wlbH_like This fam 99.4 3.4E-12 7.3E-17 137.5 18.4 325 311-655 14-376 (377)
118 TIGR02149 glgA_Coryne glycogen 99.4 2.6E-12 5.7E-17 140.6 17.7 180 465-656 196-387 (388)
119 PF12569 NARP1: NMDA receptor- 99.4 2.7E-10 5.8E-15 126.0 33.3 277 2-280 4-336 (517)
120 cd04949 GT1_gtfA_like This fam 99.4 3.5E-12 7.6E-17 138.8 18.2 163 469-647 203-370 (372)
121 COG5010 TadD Flp pilus assembl 99.4 2E-11 4.3E-16 118.7 20.8 179 53-239 50-228 (257)
122 cd03819 GT1_WavL_like This fam 99.4 5.4E-12 1.2E-16 136.1 18.1 306 311-636 10-348 (355)
123 PRK10307 putative glycosyl tra 99.4 5.2E-12 1.1E-16 139.5 18.3 205 438-658 193-410 (412)
124 cd03795 GT1_like_4 This family 99.4 7.4E-12 1.6E-16 135.0 18.8 309 313-645 16-356 (357)
125 COG5010 TadD Flp pilus assembl 99.4 3E-11 6.4E-16 117.5 20.5 184 15-206 46-229 (257)
126 cd03808 GT1_cap1E_like This fa 99.4 3.5E-11 7.5E-16 128.9 23.5 169 467-650 185-358 (359)
127 KOG3060 Uncharacterized conser 99.4 1.6E-10 3.4E-15 111.3 24.8 204 15-225 25-237 (289)
128 cd03823 GT1_ExpE7_like This fa 99.4 3.1E-12 6.7E-17 137.5 14.9 259 367-654 86-358 (359)
129 PLN03081 pentatricopeptide (PP 99.4 9.4E-11 2E-15 138.1 28.6 255 4-271 191-484 (697)
130 cd03825 GT1_wcfI_like This fam 99.4 1.2E-11 2.5E-16 133.9 19.2 166 471-656 194-365 (365)
131 KOG0550 Molecular chaperone (D 99.4 4.3E-12 9.2E-17 129.4 14.4 230 36-274 49-346 (486)
132 TIGR02552 LcrH_SycD type III s 99.4 1.1E-11 2.4E-16 113.9 16.2 118 132-249 4-121 (135)
133 PLN03077 Protein ECB2; Provisi 99.4 1.3E-10 2.7E-15 140.3 30.0 262 4-277 426-719 (857)
134 cd03814 GT1_like_2 This family 99.4 7.2E-12 1.6E-16 135.0 16.6 165 468-654 195-364 (364)
135 cd03802 GT1_AviGT4_like This f 99.4 3.2E-11 6.9E-16 128.9 21.2 301 310-654 18-335 (335)
136 KOG1128 Uncharacterized conser 99.4 1.5E-11 3.3E-16 133.7 18.1 218 6-246 402-620 (777)
137 KOG1127 TPR repeat-containing 99.4 3.2E-11 7E-16 134.4 20.6 159 17-175 473-660 (1238)
138 cd03809 GT1_mtfB_like This fam 99.4 1.8E-11 3.8E-16 132.2 18.1 263 368-650 76-364 (365)
139 KOG1111 N-acetylglucosaminyltr 99.4 1.1E-11 2.5E-16 124.4 14.9 191 435-657 165-368 (426)
140 COG3071 HemY Uncharacterized e 99.4 3.1E-09 6.8E-14 108.9 32.5 259 4-274 86-386 (400)
141 PRK15179 Vi polysaccharide bio 99.4 5.5E-11 1.2E-15 136.2 21.9 139 79-217 88-226 (694)
142 cd04955 GT1_like_6 This family 99.3 4.3E-11 9.4E-16 129.4 20.2 165 472-654 195-363 (363)
143 TIGR03087 stp1 sugar transfera 99.3 2.3E-11 5E-16 133.6 17.9 165 468-654 222-395 (397)
144 PLN02939 transferase, transfer 99.3 3.8E-11 8.3E-16 137.9 19.7 181 469-659 778-970 (977)
145 TIGR02552 LcrH_SycD type III s 99.3 3.3E-11 7.1E-16 110.7 15.7 119 98-216 4-122 (135)
146 KOG0553 TPR repeat-containing 99.3 1.6E-11 3.5E-16 121.4 13.8 118 145-262 81-198 (304)
147 KOG1127 TPR repeat-containing 99.3 8.3E-11 1.8E-15 131.2 20.2 253 4-263 421-685 (1238)
148 cd04946 GT1_AmsK_like This fam 99.3 1.8E-11 3.8E-16 134.6 15.1 167 468-649 228-405 (407)
149 cd03800 GT1_Sucrose_synthase T 99.3 9.1E-11 2E-15 128.7 20.1 175 466-650 216-397 (398)
150 TIGR02468 sucrsPsyn_pln sucros 99.3 4E-11 8.7E-16 139.8 17.5 181 467-660 476-675 (1050)
151 TIGR02470 sucr_synth sucrose s 99.3 4.7E-11 1E-15 136.6 17.4 181 467-657 547-751 (784)
152 PLN02316 synthase/transferase 99.3 6.2E-11 1.3E-15 138.7 18.5 171 465-657 834-1035(1036)
153 KOG0553 TPR repeat-containing 99.3 3.6E-11 7.8E-16 119.0 13.7 117 114-230 84-200 (304)
154 PLN00142 sucrose synthase 99.3 6E-11 1.3E-15 135.7 17.6 177 468-654 571-769 (815)
155 PLN03077 Protein ECB2; Provisi 99.3 1.1E-09 2.4E-14 132.1 29.1 257 3-271 324-647 (857)
156 KOG1156 N-terminal acetyltrans 99.3 8.4E-10 1.8E-14 118.8 24.1 237 3-246 42-287 (700)
157 PRK15363 pathogenicity island 99.3 1.2E-10 2.7E-15 106.1 15.2 102 142-243 32-133 (157)
158 PF00534 Glycos_transf_1: Glyc 99.3 2.7E-11 5.9E-16 116.3 11.6 156 466-633 11-172 (172)
159 PRK05749 3-deoxy-D-manno-octul 99.2 4.2E-10 9.2E-15 124.7 21.3 156 470-636 233-405 (425)
160 PRK00654 glgA glycogen synthas 99.2 1.9E-10 4.2E-15 128.7 18.5 177 468-658 280-465 (466)
161 cd03816 GT1_ALG1_like This fam 99.2 1.4E-10 3.1E-15 127.8 16.3 156 467-634 229-399 (415)
162 PRK14098 glycogen synthase; Pr 99.2 2.5E-10 5.4E-15 127.8 18.1 175 468-657 305-487 (489)
163 KOG1128 Uncharacterized conser 99.2 1.7E-10 3.6E-15 125.8 15.7 192 4-209 426-617 (777)
164 PF12569 NARP1: NMDA receptor- 99.2 6.7E-09 1.4E-13 115.1 28.5 229 35-272 3-285 (517)
165 COG3071 HemY Uncharacterized e 99.2 1.4E-08 3.1E-13 104.1 28.4 234 5-242 121-390 (400)
166 PRK10125 putative glycosyl tra 99.2 9.7E-10 2.1E-14 120.3 21.2 149 468-656 239-405 (405)
167 KOG3785 Uncharacterized conser 99.2 4.4E-09 9.6E-14 105.4 23.4 260 4-271 59-450 (557)
168 PRK15363 pathogenicity island 99.2 4.5E-10 9.8E-15 102.5 15.1 107 104-210 27-134 (157)
169 PRK14099 glycogen synthase; Pr 99.2 6.1E-10 1.3E-14 124.5 18.9 174 469-658 294-481 (485)
170 TIGR02095 glgA glycogen/starch 99.2 4.7E-10 1E-14 126.1 17.5 175 469-656 290-473 (473)
171 PRK04841 transcriptional regul 99.2 1.8E-08 3.9E-13 123.0 31.9 273 4-277 454-759 (903)
172 KOG2376 Signal recognition par 99.2 6.7E-09 1.5E-13 110.9 23.7 228 5-248 15-259 (652)
173 COG4783 Putative Zn-dependent 99.1 4.7E-09 1E-13 110.4 21.6 159 107-265 302-460 (484)
174 PHA01630 putative group 1 glyc 99.1 1.1E-09 2.4E-14 116.1 17.2 169 469-655 141-330 (331)
175 PLN02605 monogalactosyldiacylg 99.1 2.5E-09 5.4E-14 116.7 20.2 265 367-651 90-377 (382)
176 PHA01633 putative glycosyl tra 99.1 9E-10 2E-14 115.6 15.9 161 469-650 147-334 (335)
177 PRK13609 diacylglycerol glucos 99.1 1.6E-09 3.5E-14 118.2 18.7 267 367-654 94-370 (380)
178 cd03804 GT1_wbaZ_like This fam 99.1 1.5E-09 3.3E-14 117.0 18.2 149 473-649 198-350 (351)
179 COG4783 Putative Zn-dependent 99.1 1.3E-08 2.8E-13 107.2 24.0 154 67-244 303-456 (484)
180 PF04733 Coatomer_E: Coatomer 99.1 1.2E-09 2.6E-14 113.1 15.9 228 11-247 10-270 (290)
181 cd03794 GT1_wbuB_like This fam 99.1 1.6E-09 3.4E-14 117.5 17.3 168 466-649 216-393 (394)
182 KOG4340 Uncharacterized conser 99.1 5.2E-09 1.1E-13 102.6 17.8 217 13-238 21-266 (459)
183 PLN03088 SGT1, suppressor of 99.1 2.1E-09 4.6E-14 115.2 16.7 99 152-250 9-107 (356)
184 PF14938 SNAP: Soluble NSF att 99.1 7.6E-09 1.6E-13 107.6 20.3 186 38-253 37-236 (282)
185 PRK13608 diacylglycerol glucos 99.1 5.8E-09 1.3E-13 114.0 18.8 175 465-658 197-374 (391)
186 PRK10866 outer membrane biogen 99.1 3E-08 6.5E-13 100.2 22.5 183 2-205 32-238 (243)
187 PF04733 Coatomer_E: Coatomer 99.0 2.4E-09 5.2E-14 110.8 14.3 146 111-261 102-249 (290)
188 PLN03088 SGT1, suppressor of 99.0 5.8E-09 1.3E-13 111.9 16.9 115 3-158 3-117 (356)
189 PRK04841 transcriptional regul 99.0 4.3E-08 9.2E-13 119.6 26.6 244 4-247 493-765 (903)
190 KOG1070 rRNA processing protei 99.0 1.5E-07 3.3E-12 109.1 28.6 256 19-278 1441-1699(1710)
191 cd03791 GT1_Glycogen_synthase_ 99.0 4E-09 8.8E-14 118.8 15.9 168 468-654 294-475 (476)
192 PF13525 YfiO: Outer membrane 99.0 3.6E-08 7.8E-13 97.2 20.5 181 2-199 5-198 (203)
193 KOG3785 Uncharacterized conser 99.0 1.2E-07 2.5E-12 95.4 22.8 229 12-250 32-319 (557)
194 KOG2376 Signal recognition par 99.0 5.9E-07 1.3E-11 96.4 29.5 257 4-260 112-505 (652)
195 KOG1915 Cell cycle control pro 99.0 7.1E-07 1.5E-11 93.1 28.3 226 25-252 311-545 (677)
196 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.7E-08 3.6E-13 90.1 14.5 104 146-249 3-112 (119)
197 KOG1941 Acetylcholine receptor 99.0 3.5E-08 7.6E-13 99.4 17.9 241 2-243 6-276 (518)
198 PRK10866 outer membrane biogen 99.0 1.6E-07 3.4E-12 95.0 23.1 159 80-238 35-237 (243)
199 PRK14720 transcript cleavage f 99.0 3.7E-08 7.9E-13 114.0 20.5 180 31-249 26-205 (906)
200 COG0457 NrfG FOG: TPR repeat [ 99.0 9.1E-07 2E-11 87.4 28.3 224 15-245 36-268 (291)
201 cd03788 GT1_TPS Trehalose-6-Ph 98.9 1.3E-08 2.9E-13 113.2 16.1 172 467-652 261-458 (460)
202 cd00189 TPR Tetratricopeptide 98.9 1.4E-08 2.9E-13 85.5 12.2 98 147-244 2-99 (100)
203 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.4E-08 5.2E-13 89.1 14.4 105 112-216 3-113 (119)
204 PF14938 SNAP: Soluble NSF att 98.9 3.2E-08 7E-13 102.9 17.4 173 2-176 35-227 (282)
205 CHL00033 ycf3 photosystem I as 98.9 3.2E-08 6.9E-13 94.6 15.8 101 2-102 35-138 (168)
206 PRK02603 photosystem I assembl 98.9 4.1E-08 8.9E-13 94.2 16.6 116 2-144 35-153 (172)
207 TIGR00236 wecB UDP-N-acetylglu 98.9 2.8E-08 6.1E-13 107.8 17.0 145 469-629 197-344 (365)
208 TIGR02400 trehalose_OtsA alpha 98.9 4.2E-08 9.1E-13 108.4 18.3 171 469-653 258-454 (456)
209 PF13525 YfiO: Outer membrane 98.9 1.6E-07 3.4E-12 92.7 20.5 153 78-230 6-195 (203)
210 COG0457 NrfG FOG: TPR repeat [ 98.9 1.7E-06 3.6E-11 85.5 28.3 203 3-211 60-268 (291)
211 COG4235 Cytochrome c biogenesi 98.9 4E-08 8.7E-13 98.4 16.0 123 126-248 137-262 (287)
212 PRK02603 photosystem I assembl 98.9 6.7E-08 1.4E-12 92.8 17.2 119 109-247 33-154 (172)
213 PRK00726 murG undecaprenyldiph 98.9 3.2E-08 6.9E-13 107.1 16.6 260 368-654 82-356 (357)
214 cd03785 GT1_MurG MurG is an N- 98.9 1.9E-08 4.1E-13 108.4 14.6 242 368-634 80-339 (350)
215 CHL00033 ycf3 photosystem I as 98.9 4.7E-08 1E-12 93.5 15.5 138 91-248 13-155 (168)
216 PF13414 TPR_11: TPR repeat; P 98.9 8.2E-09 1.8E-13 82.6 8.3 67 178-244 2-69 (69)
217 PLN02275 transferase, transfer 98.9 1.3E-08 2.8E-13 110.6 12.5 135 469-616 212-370 (371)
218 cd00189 TPR Tetratricopeptide 98.9 2.7E-08 5.8E-13 83.6 12.0 98 113-210 2-99 (100)
219 PF13414 TPR_11: TPR repeat; P 98.9 7.8E-09 1.7E-13 82.7 8.0 66 2-67 3-69 (69)
220 PRK10153 DNA-binding transcrip 98.9 8.3E-08 1.8E-12 107.2 19.0 141 107-248 333-488 (517)
221 PRK11906 transcriptional regul 98.9 1.5E-07 3.2E-12 100.0 19.6 166 40-205 259-433 (458)
222 PF13692 Glyco_trans_1_4: Glyc 98.9 3.8E-09 8.3E-14 96.9 6.9 129 470-619 2-135 (135)
223 COG4235 Cytochrome c biogenesi 98.9 7.1E-08 1.5E-12 96.7 16.0 122 92-213 137-261 (287)
224 KOG2047 mRNA splicing factor [ 98.8 1.4E-06 3E-11 94.2 25.9 240 3-244 249-581 (835)
225 PF09976 TPR_21: Tetratricopep 98.8 1.7E-07 3.7E-12 87.2 17.0 117 123-240 23-145 (145)
226 KOG1915 Cell cycle control pro 98.8 3.8E-06 8.2E-11 87.8 28.1 234 4-246 75-355 (677)
227 COG4785 NlpI Lipoprotein NlpI, 98.8 2.2E-07 4.7E-12 87.6 17.3 101 4-111 67-167 (297)
228 PF09976 TPR_21: Tetratricopep 98.8 1.9E-07 4.1E-12 86.8 17.0 118 49-171 24-144 (145)
229 KOG1941 Acetylcholine receptor 98.8 1.2E-07 2.7E-12 95.5 16.4 263 5-269 46-351 (518)
230 KOG4648 Uncharacterized conser 98.8 3.4E-09 7.4E-14 105.7 4.9 228 6-249 101-337 (536)
231 PRK10153 DNA-binding transcrip 98.8 1.5E-07 3.3E-12 105.1 18.2 124 91-215 356-489 (517)
232 PRK11906 transcriptional regul 98.8 2E-07 4.4E-12 98.9 17.8 148 92-239 273-433 (458)
233 PRK00025 lpxB lipid-A-disaccha 98.8 3.8E-08 8.3E-13 107.4 13.0 138 481-633 202-355 (380)
234 KOG0543 FKBP-type peptidyl-pro 98.8 1.3E-07 2.8E-12 98.0 14.8 120 114-252 211-330 (397)
235 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 7.1E-08 1.5E-12 104.6 13.9 293 317-627 15-345 (363)
236 TIGR01133 murG undecaprenyldip 98.8 9.4E-08 2E-12 102.9 14.3 155 465-634 174-336 (348)
237 PF12895 Apc3: Anaphase-promot 98.7 2.8E-08 6E-13 82.9 7.3 81 158-239 2-84 (84)
238 PF13432 TPR_16: Tetratricopep 98.7 4.4E-08 9.5E-13 77.3 7.8 65 6-70 1-65 (65)
239 PRK14501 putative bifunctional 98.7 1.8E-07 4E-12 110.1 16.4 180 468-661 263-468 (726)
240 PRK15331 chaperone protein Sic 98.7 2E-07 4.3E-12 85.6 12.7 105 141-246 33-137 (165)
241 PF13432 TPR_16: Tetratricopep 98.7 4.6E-08 9.9E-13 77.2 7.6 63 184-246 2-64 (65)
242 KOG0543 FKBP-type peptidyl-pro 98.7 3.3E-07 7.1E-12 95.0 15.5 152 75-245 206-358 (397)
243 COG4785 NlpI Lipoprotein NlpI, 98.7 8.9E-07 1.9E-11 83.6 16.9 164 76-242 64-266 (297)
244 KOG1387 Glycosyltransferase [C 98.7 8.6E-07 1.9E-11 89.1 17.7 271 369-658 142-461 (465)
245 KOG4340 Uncharacterized conser 98.7 4.8E-07 1E-11 89.1 15.5 188 92-283 25-212 (459)
246 TIGR00215 lpxB lipid-A-disacch 98.7 9.7E-08 2.1E-12 103.9 12.2 250 367-634 79-366 (385)
247 PF12895 Apc3: Anaphase-promot 98.7 4.6E-08 9.9E-13 81.6 7.3 79 125-204 3-83 (84)
248 PRK10803 tol-pal system protei 98.7 5.9E-07 1.3E-11 91.5 15.9 105 37-145 143-251 (263)
249 cd04950 GT1_like_1 Glycosyltra 98.7 4.1E-07 9E-12 98.9 15.8 161 467-654 202-370 (373)
250 PRK10803 tol-pal system protei 98.7 6.7E-07 1.5E-11 91.0 16.2 106 145-250 142-254 (263)
251 KOG3081 Vesicle coat complex C 98.7 1.6E-05 3.4E-10 77.9 24.5 216 9-232 15-260 (299)
252 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 7.9E-07 1.7E-11 95.1 16.6 122 115-239 173-294 (395)
253 KOG2047 mRNA splicing factor [ 98.6 1.1E-05 2.4E-10 87.3 24.9 230 11-243 356-616 (835)
254 PLN03063 alpha,alpha-trehalose 98.6 9.7E-07 2.1E-11 103.9 18.3 180 469-660 278-482 (797)
255 cd01635 Glycosyltransferase_GT 98.6 1.3E-06 2.8E-11 87.1 16.8 105 472-582 109-214 (229)
256 PRK15331 chaperone protein Sic 98.6 5.6E-07 1.2E-11 82.7 12.6 101 107-207 33-133 (165)
257 PF12688 TPR_5: Tetratrico pep 98.6 1.2E-06 2.5E-11 77.7 13.8 94 113-206 3-102 (120)
258 COG4105 ComL DNA uptake lipopr 98.6 8.3E-06 1.8E-10 80.2 20.9 190 2-212 34-237 (254)
259 TIGR03713 acc_sec_asp1 accesso 98.6 3.3E-07 7.1E-12 102.6 12.5 167 471-651 322-517 (519)
260 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.7E-06 3.7E-11 92.6 16.2 118 86-206 178-295 (395)
261 KOG4648 Uncharacterized conser 98.5 1.3E-07 2.9E-12 94.5 7.1 195 39-249 100-303 (536)
262 KOG1070 rRNA processing protei 98.5 2.1E-05 4.5E-10 92.0 25.0 208 4-219 1460-1676(1710)
263 KOG0853 Glycosyltransferase [C 98.5 2.4E-06 5.2E-11 92.3 15.3 181 465-655 268-467 (495)
264 KOG1586 Protein required for f 98.5 2E-05 4.3E-10 75.5 19.5 132 125-256 87-238 (288)
265 KOG4234 TPR repeat-containing 98.5 1.2E-06 2.5E-11 81.7 10.9 104 148-251 98-206 (271)
266 PF12688 TPR_5: Tetratrico pep 98.5 4E-06 8.7E-11 74.2 13.2 96 146-241 2-103 (120)
267 KOG2053 Mitochondrial inherita 98.4 7.9E-05 1.7E-09 84.1 25.7 226 13-246 20-259 (932)
268 COG4105 ComL DNA uptake lipopr 98.4 5.5E-05 1.2E-09 74.5 21.6 171 77-247 34-238 (254)
269 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.3E-06 2.8E-11 92.8 10.8 68 175-242 71-141 (453)
270 PF14559 TPR_19: Tetratricopep 98.4 8.8E-07 1.9E-11 70.4 7.2 54 192-245 4-57 (68)
271 COG1729 Uncharacterized protei 98.4 5.9E-06 1.3E-10 82.1 14.3 105 148-252 144-254 (262)
272 COG4700 Uncharacterized protei 98.4 3.7E-05 8.1E-10 71.1 18.1 147 92-240 71-220 (251)
273 KOG3081 Vesicle coat complex C 98.4 3.8E-05 8.3E-10 75.3 18.9 209 44-260 16-254 (299)
274 PF14559 TPR_19: Tetratricopep 98.4 1.4E-06 2.9E-11 69.3 7.5 66 12-77 1-66 (68)
275 COG1729 Uncharacterized protei 98.4 7.2E-06 1.6E-10 81.5 14.0 105 5-113 144-251 (262)
276 COG0438 RfaG Glycosyltransfera 98.4 1.3E-05 2.9E-10 84.9 17.3 175 471-658 200-379 (381)
277 KOG4234 TPR repeat-containing 98.4 6.1E-06 1.3E-10 77.1 12.3 103 114-216 98-205 (271)
278 COG3898 Uncharacterized membra 98.4 0.001 2.3E-08 68.6 29.2 266 5-290 123-399 (531)
279 COG3898 Uncharacterized membra 98.3 0.0005 1.1E-08 70.8 26.7 226 13-246 165-395 (531)
280 PF13371 TPR_9: Tetratricopept 98.3 2.6E-06 5.6E-11 68.8 8.6 65 186-250 2-66 (73)
281 COG4700 Uncharacterized protei 98.3 7.4E-05 1.6E-09 69.2 18.6 155 44-207 64-221 (251)
282 PF13512 TPR_18: Tetratricopep 98.3 9.7E-06 2.1E-10 73.0 12.7 71 2-72 10-83 (142)
283 PF13371 TPR_9: Tetratricopept 98.3 3.1E-06 6.7E-11 68.3 8.8 65 153-217 3-67 (73)
284 PF13424 TPR_12: Tetratricopep 98.3 8.8E-07 1.9E-11 72.6 5.4 74 33-106 2-75 (78)
285 KOG1585 Protein required for f 98.3 9.3E-05 2E-09 71.5 19.3 202 36-270 31-248 (308)
286 PF13512 TPR_18: Tetratricopep 98.3 3.2E-05 6.8E-10 69.7 14.3 105 145-249 10-135 (142)
287 cd03793 GT1_Glycogen_synthase_ 98.2 2.1E-05 4.6E-10 86.9 15.1 110 543-658 467-589 (590)
288 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 7.1E-06 1.5E-10 87.3 10.7 68 107-174 71-141 (453)
289 KOG3617 WD40 and TPR repeat-co 98.2 0.00028 6E-09 78.6 22.9 204 36-239 858-1171(1416)
290 KOG4555 TPR repeat-containing 98.2 8.1E-05 1.8E-09 64.8 15.0 102 5-109 46-147 (175)
291 KOG2471 TPR repeat-containing 98.2 0.00014 3.1E-09 76.6 19.7 242 2-244 240-650 (696)
292 KOG1585 Protein required for f 98.2 0.00021 4.6E-09 69.1 19.3 135 77-240 31-177 (308)
293 PF06552 TOM20_plant: Plant sp 98.2 1.5E-05 3.4E-10 73.9 11.0 93 52-144 7-113 (186)
294 KOG1586 Protein required for f 98.2 0.00048 1E-08 66.3 21.2 180 4-213 36-229 (288)
295 KOG2796 Uncharacterized conser 98.2 0.00022 4.8E-09 69.6 18.8 186 42-247 128-320 (366)
296 PF13424 TPR_12: Tetratricopep 98.2 2.4E-06 5.3E-11 70.0 4.7 64 179-242 5-75 (78)
297 TIGR02919 accessory Sec system 98.1 6.7E-05 1.4E-09 82.2 16.6 128 484-628 291-420 (438)
298 TIGR02398 gluc_glyc_Psyn gluco 98.1 0.00014 2.9E-09 80.5 18.1 171 469-653 284-480 (487)
299 KOG4555 TPR repeat-containing 98.1 0.00013 2.9E-09 63.5 14.0 93 117-209 49-145 (175)
300 KOG3617 WD40 and TPR repeat-co 98.1 0.0001 2.2E-09 81.9 16.6 207 4-242 759-996 (1416)
301 KOG2796 Uncharacterized conser 98.1 0.00022 4.8E-09 69.6 16.8 137 76-212 176-319 (366)
302 PF04184 ST7: ST7 protein; In 98.0 0.00079 1.7E-08 72.0 21.6 188 41-248 173-381 (539)
303 KOG2300 Uncharacterized conser 98.0 0.0042 9E-08 65.9 26.5 133 2-134 7-150 (629)
304 TIGR01426 MGT glycosyltransfer 98.0 0.00014 3.1E-09 79.7 16.8 164 468-653 224-390 (392)
305 PF06552 TOM20_plant: Plant sp 98.0 5.6E-05 1.2E-09 70.3 11.2 97 18-114 7-117 (186)
306 PLN02670 transferase, transfer 98.0 0.00014 3.1E-09 80.5 16.6 173 468-656 277-466 (472)
307 KOG2610 Uncharacterized conser 98.0 0.00033 7.1E-09 70.7 17.3 152 89-240 115-274 (491)
308 COG0707 MurG UDP-N-acetylgluco 98.0 0.00046 1E-08 73.6 18.6 244 366-633 80-338 (357)
309 KOG2053 Mitochondrial inherita 97.9 0.0033 7.2E-08 71.4 25.4 195 47-250 20-228 (932)
310 TIGR03492 conserved hypothetic 97.9 0.00011 2.4E-09 80.2 13.4 155 481-650 221-393 (396)
311 COG1819 Glycosyl transferases, 97.9 0.00074 1.6E-08 73.8 19.4 165 466-655 234-401 (406)
312 PLN02992 coniferyl-alcohol glu 97.9 0.00023 4.9E-09 79.0 15.5 141 468-619 262-427 (481)
313 PLN03064 alpha,alpha-trehalose 97.9 0.00041 8.9E-09 81.9 18.1 179 469-659 362-565 (934)
314 PF04184 ST7: ST7 protein; In 97.9 0.0015 3.1E-08 70.0 20.2 222 9-251 175-423 (539)
315 KOG2471 TPR repeat-containing 97.9 0.00013 2.8E-09 76.9 12.2 240 4-259 102-381 (696)
316 PLN03004 UDP-glycosyltransfera 97.9 0.00018 4E-09 79.2 14.1 146 467-621 268-426 (451)
317 PF05843 Suf: Suppressor of fo 97.9 0.00035 7.6E-09 72.5 15.3 135 113-247 3-141 (280)
318 PF13524 Glyco_trans_1_2: Glyc 97.8 6.5E-05 1.4E-09 63.7 7.3 89 553-649 1-90 (92)
319 KOG2610 Uncharacterized conser 97.8 0.0013 2.8E-08 66.5 16.9 161 40-207 107-275 (491)
320 PLN02764 glycosyltransferase f 97.8 0.00046 1E-08 75.8 14.8 183 467-663 255-449 (453)
321 KOG4642 Chaperone-dependent E3 97.7 0.00021 4.5E-09 69.0 10.1 90 83-172 16-105 (284)
322 KOG0545 Aryl-hydrocarbon recep 97.7 0.00058 1.3E-08 66.1 12.9 107 146-252 179-303 (329)
323 PF05843 Suf: Suppressor of fo 97.7 0.00098 2.1E-08 69.2 15.6 132 82-213 6-141 (280)
324 PHA03392 egt ecdysteroid UDP-g 97.7 0.0011 2.3E-08 74.7 17.0 163 470-653 297-465 (507)
325 PF13281 DUF4071: Domain of un 97.7 0.0054 1.2E-07 64.9 21.0 189 3-214 142-340 (374)
326 KOG4642 Chaperone-dependent E3 97.7 0.00052 1.1E-08 66.3 11.7 94 115-208 14-107 (284)
327 COG0297 GlgA Glycogen synthase 97.7 0.0014 3.1E-08 72.2 16.7 165 468-658 292-480 (487)
328 PLN02410 UDP-glucoronosyl/UDP- 97.7 0.00062 1.3E-08 75.3 14.1 146 467-620 262-411 (451)
329 PF13428 TPR_14: Tetratricopep 97.6 0.00013 2.7E-09 52.3 5.6 43 2-44 1-43 (44)
330 PF02259 FAT: FAT domain; Int 97.6 0.035 7.6E-07 59.6 27.0 116 110-225 145-304 (352)
331 cd03784 GT1_Gtf_like This fami 97.6 0.0021 4.5E-08 70.7 17.7 142 468-631 238-383 (401)
332 PF13281 DUF4071: Domain of un 97.6 0.017 3.6E-07 61.3 23.1 189 35-250 140-342 (374)
333 PLN03007 UDP-glucosyltransfera 97.6 0.0013 2.9E-08 73.7 16.0 108 467-580 283-390 (482)
334 PLN02863 UDP-glucoronosyl/UDP- 97.6 0.0014 3E-08 73.1 16.0 103 468-580 282-388 (477)
335 PLN02167 UDP-glycosyltransfera 97.6 0.0016 3.4E-08 72.9 16.3 102 468-580 279-385 (475)
336 KOG1550 Extracellular protein 97.6 0.016 3.5E-07 66.1 24.6 229 3-243 245-505 (552)
337 PLN00164 glucosyltransferase; 97.6 0.00098 2.1E-08 74.5 14.4 140 468-620 271-432 (480)
338 PLN00414 glycosyltransferase f 97.6 0.00096 2.1E-08 73.7 13.9 155 467-632 250-416 (446)
339 PF13428 TPR_14: Tetratricopep 97.6 0.00017 3.6E-09 51.7 5.3 40 181-220 3-42 (44)
340 PLN02210 UDP-glucosyl transfer 97.6 0.0014 3.1E-08 72.7 15.1 139 468-620 268-416 (456)
341 PLN02554 UDP-glycosyltransfera 97.5 0.0025 5.4E-08 71.4 16.7 103 468-581 273-388 (481)
342 PF10300 DUF3808: Protein of u 97.5 0.025 5.4E-07 63.1 24.3 153 89-241 200-375 (468)
343 PF08631 SPO22: Meiosis protei 97.5 0.1 2.2E-06 54.1 27.4 227 12-240 3-273 (278)
344 PLN02562 UDP-glycosyltransfera 97.5 0.002 4.2E-08 71.5 15.2 143 469-626 273-420 (448)
345 PF00201 UDPGT: UDP-glucoronos 97.5 0.00043 9.3E-09 78.5 10.4 162 468-653 275-442 (500)
346 PF10300 DUF3808: Protein of u 97.5 0.0073 1.6E-07 67.3 19.5 159 49-208 201-376 (468)
347 PLN02208 glycosyltransferase f 97.5 0.0019 4E-08 71.3 14.6 151 467-632 249-415 (442)
348 PLN02207 UDP-glycosyltransfera 97.5 0.0031 6.6E-08 69.9 16.1 103 467-580 273-377 (468)
349 PLN03015 UDP-glucosyl transfer 97.5 0.0012 2.7E-08 72.8 12.9 104 468-581 266-381 (470)
350 KOG2300 Uncharacterized conser 97.5 0.06 1.3E-06 57.5 24.2 224 14-237 287-551 (629)
351 TIGR03590 PseG pseudaminic aci 97.4 0.0037 8.1E-08 64.8 15.1 93 471-580 172-267 (279)
352 PLN02448 UDP-glycosyltransfera 97.4 0.0028 6.2E-08 70.6 15.0 135 468-620 273-416 (459)
353 KOG0376 Serine-threonine phosp 97.4 0.00023 5.1E-09 75.7 5.8 103 149-251 8-110 (476)
354 PF13431 TPR_17: Tetratricopep 97.4 0.00019 4.1E-09 48.1 3.3 32 202-233 2-33 (34)
355 PF13431 TPR_17: Tetratricopep 97.4 0.0002 4.2E-09 48.0 3.3 34 24-57 1-34 (34)
356 PLN02173 UDP-glucosyl transfer 97.3 0.0029 6.3E-08 69.8 14.1 140 467-620 262-409 (449)
357 PF00515 TPR_1: Tetratricopept 97.3 0.00034 7.3E-09 46.8 4.3 33 2-34 1-33 (34)
358 PRK09814 beta-1,6-galactofuran 97.3 0.001 2.3E-08 71.0 10.3 132 470-633 169-312 (333)
359 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0062 1.3E-07 61.9 14.7 101 35-142 80-184 (390)
360 KOG0376 Serine-threonine phosp 97.3 0.00038 8.3E-09 74.1 6.5 124 116-244 9-132 (476)
361 COG0790 FOG: TPR repeat, SEL1 97.3 0.062 1.3E-06 56.2 23.4 170 46-227 51-236 (292)
362 COG2909 MalT ATP-dependent tra 97.3 0.076 1.7E-06 61.0 24.8 231 6-238 419-684 (894)
363 KOG0530 Protein farnesyltransf 97.3 0.04 8.7E-07 54.4 19.5 170 15-191 56-233 (318)
364 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0068 1.5E-07 61.6 14.6 92 117-208 87-182 (390)
365 PF07719 TPR_2: Tetratricopept 97.3 0.00056 1.2E-08 45.7 4.9 33 2-34 1-33 (34)
366 COG3118 Thioredoxin domain-con 97.3 0.014 3E-07 58.9 16.6 137 111-248 134-271 (304)
367 PF00515 TPR_1: Tetratricopept 97.3 0.00043 9.3E-09 46.3 4.3 32 214-245 2-33 (34)
368 PLN02555 limonoid glucosyltran 97.3 0.0041 8.9E-08 69.2 14.4 105 469-580 277-382 (480)
369 KOG0545 Aryl-hydrocarbon recep 97.3 0.0065 1.4E-07 59.1 13.4 114 36-180 178-299 (329)
370 PF07719 TPR_2: Tetratricopept 97.2 0.00066 1.4E-08 45.3 4.9 33 214-246 2-34 (34)
371 PF02259 FAT: FAT domain; Int 97.2 0.11 2.4E-06 55.7 24.7 240 8-254 4-299 (352)
372 PLN02534 UDP-glycosyltransfera 97.2 0.0035 7.5E-08 70.0 12.9 106 468-581 282-390 (491)
373 PLN02152 indole-3-acetate beta 97.2 0.0087 1.9E-07 66.2 15.9 107 468-581 260-373 (455)
374 KOG3616 Selective LIM binding 97.2 0.015 3.3E-07 64.3 16.9 211 4-240 663-909 (1636)
375 COG2909 MalT ATP-dependent tra 97.2 0.097 2.1E-06 60.2 23.8 203 3-206 459-686 (894)
376 PF03704 BTAD: Bacterial trans 97.2 0.013 2.7E-07 54.4 14.3 62 180-241 63-124 (146)
377 PF02684 LpxB: Lipid-A-disacch 97.2 0.012 2.6E-07 63.0 15.8 140 480-632 199-353 (373)
378 COG0790 FOG: TPR repeat, SEL1 97.1 0.26 5.5E-06 51.5 25.8 169 13-193 52-236 (292)
379 COG3118 Thioredoxin domain-con 97.1 0.026 5.6E-07 57.0 16.8 129 6-141 138-266 (304)
380 PRK12446 undecaprenyldiphospho 97.1 0.0058 1.2E-07 65.7 12.7 78 543-624 245-330 (352)
381 PF13528 Glyco_trans_1_3: Glyc 97.1 0.0067 1.4E-07 64.3 13.0 109 468-602 191-300 (318)
382 KOG1914 mRNA cleavage and poly 97.0 0.15 3.3E-06 55.3 22.4 151 92-242 308-464 (656)
383 PF02350 Epimerase_2: UDP-N-ac 97.0 0.0057 1.2E-07 65.5 12.0 134 467-620 178-319 (346)
384 PF10345 Cohesin_load: Cohesin 96.9 0.69 1.5E-05 53.7 29.2 269 2-273 59-428 (608)
385 KOG1914 mRNA cleavage and poly 96.9 0.29 6.3E-06 53.2 23.3 138 125-262 307-450 (656)
386 KOG0530 Protein farnesyltransf 96.9 0.038 8.3E-07 54.5 14.9 177 45-227 52-236 (318)
387 PRK02797 4-alpha-L-fucosyltran 96.9 0.08 1.7E-06 54.2 17.8 261 369-656 31-317 (322)
388 COG2976 Uncharacterized protei 96.9 0.057 1.2E-06 51.2 15.4 116 129-246 70-192 (207)
389 PF03704 BTAD: Bacterial trans 96.9 0.037 8.1E-07 51.2 14.5 113 41-173 11-124 (146)
390 TIGR02094 more_P_ylases alpha- 96.8 0.025 5.5E-07 64.7 15.8 175 468-653 387-598 (601)
391 KOG0985 Vesicle coat protein c 96.8 0.24 5.1E-06 57.5 22.1 225 15-277 1088-1340(1666)
392 KOG1308 Hsp70-interacting prot 96.7 0.0014 3E-08 66.9 4.1 90 156-245 125-214 (377)
393 KOG4507 Uncharacterized conser 96.7 0.0044 9.6E-08 67.0 7.8 101 156-256 618-719 (886)
394 PF08424 NRDE-2: NRDE-2, neces 96.7 0.13 2.8E-06 54.5 19.1 146 98-243 6-184 (321)
395 PF04910 Tcf25: Transcriptiona 96.7 0.071 1.5E-06 57.2 16.7 142 104-245 33-225 (360)
396 PF13181 TPR_8: Tetratricopept 96.7 0.003 6.6E-08 42.1 4.1 32 214-245 2-33 (34)
397 KOG3616 Selective LIM binding 96.6 0.095 2.1E-06 58.4 17.3 158 87-246 801-1028(1636)
398 PF13181 TPR_8: Tetratricopept 96.6 0.0033 7.1E-08 41.9 4.1 31 3-33 2-32 (34)
399 KOG2941 Beta-1,4-mannosyltrans 96.6 0.019 4.1E-07 58.8 10.9 125 496-633 290-423 (444)
400 PF08631 SPO22: Meiosis protei 96.6 0.35 7.5E-06 50.2 20.8 162 46-208 3-186 (278)
401 PF07079 DUF1347: Protein of u 96.6 0.62 1.3E-05 49.8 21.9 194 42-239 304-521 (549)
402 PF04910 Tcf25: Transcriptiona 96.5 0.089 1.9E-06 56.4 16.5 169 29-212 33-226 (360)
403 COG2976 Uncharacterized protei 96.5 0.13 2.8E-06 48.9 15.2 98 80-178 92-192 (207)
404 KOG1308 Hsp70-interacting prot 96.5 0.0011 2.4E-08 67.5 1.6 94 117-210 120-213 (377)
405 KOG1550 Extracellular protein 96.5 0.27 5.8E-06 56.3 21.0 182 52-243 228-427 (552)
406 PF08424 NRDE-2: NRDE-2, neces 96.5 0.14 3.1E-06 54.2 17.4 117 93-209 47-184 (321)
407 KOG3783 Uncharacterized conser 96.5 1.1 2.5E-05 49.0 23.9 222 19-246 250-524 (546)
408 TIGR00661 MJ1255 conserved hyp 96.4 0.021 4.6E-07 60.6 11.1 70 529-603 228-298 (321)
409 COG1519 KdtA 3-deoxy-D-manno-o 96.4 0.17 3.7E-06 54.0 17.2 262 359-635 104-402 (419)
410 KOG3824 Huntingtin interacting 96.3 0.014 3.1E-07 58.5 8.2 66 189-254 126-191 (472)
411 cd04299 GT1_Glycogen_Phosphory 96.3 0.12 2.6E-06 60.6 16.7 178 466-657 474-692 (778)
412 KOG1258 mRNA processing protei 96.2 2.8 6.1E-05 46.7 26.5 206 15-227 268-489 (577)
413 KOG4507 Uncharacterized conser 96.2 0.019 4E-07 62.4 8.7 105 120-224 616-721 (886)
414 PF06258 Mito_fiss_Elm1: Mitoc 96.1 0.067 1.4E-06 56.1 12.5 202 373-588 53-264 (311)
415 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1 2.3E-05 48.0 20.7 213 24-246 290-535 (660)
416 PF13174 TPR_6: Tetratricopept 96.1 0.01 2.3E-07 39.0 4.1 32 3-34 1-32 (33)
417 TIGR03568 NeuC_NnaA UDP-N-acet 96.0 0.13 2.8E-06 55.7 14.7 133 470-620 202-339 (365)
418 PF13176 TPR_7: Tetratricopept 95.9 0.0068 1.5E-07 41.1 2.7 25 216-240 2-26 (36)
419 KOG1192 UDP-glucuronosyl and U 95.9 0.068 1.5E-06 60.5 12.4 148 470-631 278-434 (496)
420 KOG1258 mRNA processing protei 95.9 2.1 4.5E-05 47.7 22.7 170 87-256 307-484 (577)
421 PF10345 Cohesin_load: Cohesin 95.9 1.3 2.9E-05 51.4 22.9 236 4-240 303-604 (608)
422 KOG1464 COP9 signalosome, subu 95.9 0.32 6.9E-06 48.3 14.8 207 15-227 40-286 (440)
423 PRK15180 Vi polysaccharide bio 95.8 0.034 7.4E-07 59.0 8.3 143 122-264 300-442 (831)
424 PF13174 TPR_6: Tetratricopept 95.8 0.017 3.7E-07 37.9 4.1 31 215-245 2-32 (33)
425 KOG2041 WD40 repeat protein [G 95.7 0.53 1.1E-05 52.6 16.9 212 3-239 693-936 (1189)
426 PF14561 TPR_20: Tetratricopep 95.6 0.12 2.5E-06 43.4 9.6 51 198-248 7-57 (90)
427 COG0763 LpxB Lipid A disacchar 95.5 0.1 2.3E-06 54.9 10.7 140 480-632 203-357 (381)
428 KOG1464 COP9 signalosome, subu 95.5 0.72 1.6E-05 45.9 15.6 193 49-244 40-262 (440)
429 PF07079 DUF1347: Protein of u 95.5 3.7 8.1E-05 44.1 21.8 188 11-205 307-521 (549)
430 KOG3824 Huntingtin interacting 95.5 0.05 1.1E-06 54.7 7.7 66 122-187 127-192 (472)
431 COG3914 Spy Predicted O-linked 95.4 0.54 1.2E-05 51.9 15.8 132 125-256 45-185 (620)
432 cd03789 GT1_LPS_heptosyltransf 95.4 0.2 4.4E-06 51.9 12.7 96 483-589 138-233 (279)
433 KOG2041 WD40 repeat protein [G 95.4 0.65 1.4E-05 51.9 16.3 185 31-238 688-877 (1189)
434 KOG0985 Vesicle coat protein c 95.3 1.9 4.1E-05 50.5 20.3 193 8-239 1054-1246(1666)
435 PF13176 TPR_7: Tetratricopept 95.3 0.033 7.1E-07 37.7 4.2 24 5-28 2-25 (36)
436 PF04007 DUF354: Protein of un 95.3 1.3 2.8E-05 47.0 18.0 61 543-611 241-302 (335)
437 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.084 1.8E-06 39.2 6.4 37 4-40 3-39 (53)
438 PF04781 DUF627: Protein of un 95.2 0.18 3.9E-06 43.4 9.3 45 96-140 63-107 (111)
439 PF09986 DUF2225: Uncharacteri 95.1 0.2 4.4E-06 49.5 11.0 93 48-140 89-194 (214)
440 PF05693 Glycogen_syn: Glycoge 95.1 0.025 5.5E-07 62.8 5.0 111 543-660 462-586 (633)
441 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.068 1.5E-06 39.7 5.3 38 214-251 2-39 (53)
442 KOG1839 Uncharacterized protei 94.9 0.23 5E-06 59.6 12.3 163 80-242 935-1128(1236)
443 PF09613 HrpB1_HrpK: Bacterial 94.9 0.45 9.8E-06 44.1 11.6 98 146-244 11-108 (160)
444 PF12968 DUF3856: Domain of Un 94.9 1.1 2.4E-05 38.9 13.0 52 88-139 20-83 (144)
445 PF01075 Glyco_transf_9: Glyco 94.9 0.049 1.1E-06 55.4 6.0 198 368-589 3-218 (247)
446 PF14561 TPR_20: Tetratricopep 94.8 0.25 5.4E-06 41.4 9.1 64 165-228 8-73 (90)
447 PRK01021 lpxB lipid-A-disaccha 94.8 0.83 1.8E-05 51.7 15.8 139 480-634 428-586 (608)
448 PF09613 HrpB1_HrpK: Bacterial 94.8 0.48 1.1E-05 43.9 11.5 83 113-195 12-94 (160)
449 PRK10941 hypothetical protein; 94.7 0.2 4.3E-06 51.2 9.9 71 181-251 183-253 (269)
450 COG5107 RNA14 Pre-mRNA 3'-end 94.7 4.3 9.2E-05 43.6 19.4 176 58-243 290-496 (660)
451 PF12968 DUF3856: Domain of Un 94.7 1.1 2.3E-05 39.0 12.4 86 157-242 21-129 (144)
452 KOG2396 HAT (Half-A-TPR) repea 94.7 0.32 7E-06 52.5 11.4 87 165-251 91-178 (568)
453 smart00028 TPR Tetratricopepti 94.6 0.061 1.3E-06 34.1 4.0 31 3-33 2-32 (34)
454 COG4649 Uncharacterized protei 94.6 2.1 4.5E-05 40.0 14.8 48 92-139 73-122 (221)
455 PF04781 DUF627: Protein of un 94.5 0.28 6.1E-06 42.2 8.7 100 86-208 5-107 (111)
456 TIGR02201 heptsyl_trn_III lipo 94.5 0.66 1.4E-05 49.7 14.0 112 469-590 182-296 (344)
457 PRK10941 hypothetical protein; 94.4 0.49 1.1E-05 48.4 11.8 77 146-222 182-258 (269)
458 smart00028 TPR Tetratricopepti 94.3 0.068 1.5E-06 33.9 3.8 31 215-245 3-33 (34)
459 KOG1839 Uncharacterized protei 94.3 0.32 6.9E-06 58.5 11.5 169 37-206 933-1126(1236)
460 PF10602 RPN7: 26S proteasome 94.3 0.49 1.1E-05 45.3 11.0 29 37-65 37-65 (177)
461 KOG0890 Protein kinase of the 94.3 7.7 0.00017 50.0 23.5 246 1-250 1669-1965(2382)
462 KOG2422 Uncharacterized conser 94.1 5 0.00011 44.5 18.9 50 15-64 251-312 (665)
463 PF05159 Capsule_synth: Capsul 94.1 0.11 2.4E-06 53.5 6.6 86 482-579 138-224 (269)
464 COG4976 Predicted methyltransf 93.9 0.091 2E-06 50.9 5.0 65 187-251 3-67 (287)
465 KOG1538 Uncharacterized conser 93.9 3 6.4E-05 46.6 16.9 216 5-239 588-830 (1081)
466 KOG2396 HAT (Half-A-TPR) repea 93.9 0.57 1.2E-05 50.7 11.3 90 95-184 89-179 (568)
467 PRK10916 ADP-heptose:LPS hepto 93.8 1 2.2E-05 48.3 13.8 111 469-589 181-296 (348)
468 PF04101 Glyco_tran_28_C: Glyc 93.8 0.084 1.8E-06 50.0 4.8 91 530-627 55-152 (167)
469 KOG4814 Uncharacterized conser 93.8 2.2 4.8E-05 47.6 15.6 100 75-174 352-457 (872)
470 KOG3364 Membrane protein invol 93.6 0.67 1.4E-05 41.3 9.3 73 179-251 32-109 (149)
471 KOG3807 Predicted membrane pro 93.4 9.4 0.0002 39.4 18.4 53 115-167 279-333 (556)
472 KOG0128 RNA-binding protein SA 93.4 19 0.00041 41.8 23.0 217 5-222 116-355 (881)
473 TIGR02195 heptsyl_trn_II lipop 93.4 0.97 2.1E-05 48.2 12.7 95 483-589 192-286 (334)
474 PRK10117 trehalose-6-phosphate 93.4 2.9 6.3E-05 46.3 16.2 180 469-657 254-455 (474)
475 PF09986 DUF2225: Uncharacteri 93.3 0.91 2E-05 44.9 11.2 28 215-242 167-194 (214)
476 KOG0890 Protein kinase of the 93.3 12 0.00027 48.3 22.8 65 177-243 1668-1732(2382)
477 PF07429 Glyco_transf_56: 4-al 93.2 1.1 2.5E-05 46.7 12.0 125 469-602 186-313 (360)
478 PF10602 RPN7: 26S proteasome 93.2 0.9 1.9E-05 43.5 10.6 62 112-173 37-101 (177)
479 PF00982 Glyco_transf_20: Glyc 93.0 1.6 3.5E-05 48.7 13.8 177 468-653 274-472 (474)
480 COG4649 Uncharacterized protei 93.0 7.9 0.00017 36.3 16.4 143 85-242 47-196 (221)
481 COG4370 Uncharacterized protei 92.9 0.1 2.3E-06 52.5 3.7 118 525-657 291-411 (412)
482 KOG1463 26S proteasome regulat 92.7 12 0.00027 38.8 18.1 243 2-244 4-318 (411)
483 PRK14089 ipid-A-disaccharide s 92.7 0.63 1.4E-05 49.6 9.7 78 480-578 182-259 (347)
484 TIGR02561 HrpB1_HrpK type III 92.5 1.5 3.2E-05 40.0 10.2 76 154-229 19-94 (153)
485 KOG4814 Uncharacterized conser 92.5 1.1 2.5E-05 49.7 11.2 102 38-140 356-457 (872)
486 KOG2422 Uncharacterized conser 92.4 7.2 0.00016 43.3 17.0 156 89-245 250-451 (665)
487 PF13374 TPR_10: Tetratricopep 92.4 0.26 5.6E-06 34.1 4.4 28 3-30 3-30 (42)
488 PRK15180 Vi polysaccharide bio 92.4 1.9 4.1E-05 46.4 12.4 125 13-144 300-424 (831)
489 KOG3364 Membrane protein invol 92.4 2.4 5.2E-05 37.9 11.0 73 145-217 32-109 (149)
490 COG4671 Predicted glycosyl tra 92.4 3.6 7.8E-05 42.9 14.0 126 467-603 217-346 (400)
491 COG5159 RPN6 26S proteasome re 92.3 14 0.0003 37.4 19.8 201 6-208 7-235 (421)
492 KOG3783 Uncharacterized conser 92.3 7.5 0.00016 42.9 17.0 207 5-212 270-524 (546)
493 PRK10017 colanic acid biosynth 92.3 3.9 8.4E-05 45.0 15.4 95 529-634 306-404 (426)
494 TIGR02561 HrpB1_HrpK type III 92.2 1.9 4.1E-05 39.4 10.5 80 115-194 14-93 (153)
495 COG5159 RPN6 26S proteasome re 92.1 9.3 0.0002 38.7 16.1 203 40-242 7-235 (421)
496 KOG2581 26S proteasome regulat 92.1 13 0.00028 39.6 17.7 134 46-179 136-281 (493)
497 COG0381 WecB UDP-N-acetylgluco 92.1 2.2 4.7E-05 45.4 12.4 144 468-628 203-350 (383)
498 COG1747 Uncharacterized N-term 92.0 18 0.0004 39.7 19.1 172 4-212 101-292 (711)
499 KOG1310 WD40 repeat protein [G 91.8 0.47 1E-05 51.5 7.2 89 158-246 387-478 (758)
500 KOG4014 Uncharacterized conser 91.7 10 0.00023 35.8 14.9 188 2-208 34-233 (248)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-137 Score=1065.78 Aligned_cols=666 Identities=42% Similarity=0.619 Sum_probs=627.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 1 MQPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 1 ~a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
++++|+++|.+|.+.+.|++|+.+|++++...|+++.++.++|.+|+++|..+-|+..|++++++.|+.++++.+++.++
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANAL 330 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888877777766
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 160 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (732)
..+ |+..+|..+|.+++.+.|+++++.++||.+|.++|++++|..+|+++++..|..+.++.+||.+|.++|+
T Consensus 331 kd~-------G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 331 KDK-------GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred Hhc-------cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 664 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
+++|+.+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+++.++|..++++.+||.+|...|+..+|++.|+.++
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCChhHHHHHHHHHhhhccCCc-----HHHHHHHHHHHH--HHhhhc------------------------------
Q 004753 241 KIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDWGK--RFMRLY------------------------------ 283 (732)
Q Consensus 241 ~l~p~~~~a~~~~~la~~~~~~~~~-----~~a~~~~~~~~~--~~~~~~------------------------------ 283 (732)
+++||.+++..|++.++.++..|.+ +++++.+++|.. ++.++.
T Consensus 484 klkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~ 563 (966)
T KOG4626|consen 484 KLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVH 563 (966)
T ss_pred ccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999987 778888888873 332222
Q ss_pred ----cCCCCCCCCCCCCCCccccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEE
Q 004753 284 ----SQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWR 359 (732)
Q Consensus 284 ----~~~~~~~~~~~~~~~lrIGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~ 359 (732)
+++..|.+.+.+++||||||||+||++||+++++..++.+||++++||+||+.+..++ ..||.++.+.+++|.
T Consensus 564 ~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~---t~fR~kv~~e~ehf~ 640 (966)
T KOG4626|consen 564 VLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDG---TNFRDKVMKEAEHFV 640 (966)
T ss_pred hccCCCCCChhhCCCCcCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecCCC---chHHHHHHhhcccee
Confidence 3467778888889999999999999999999999999999999999999999987655 238999999999999
Q ss_pred EccCCCHHHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCcccCCcc
Q 004753 360 DIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVE 439 (732)
Q Consensus 360 ~~~~~~~~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~~E 439 (732)
|+++++...+|..|++|+|||||.+.|||.|+|.++||+|||||||+|+|||+|||.++|||+|+|.++.|++....|+|
T Consensus 641 Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysE 720 (966)
T KOG4626|consen 641 DLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSE 720 (966)
T ss_pred ehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccccCCCC--------CCCCCCCCCCCCCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 004753 440 ELIRLPECFLCYTPSP--------EAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC 511 (732)
Q Consensus 440 ~l~~lp~~~~~~~~~~--------~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 511 (732)
||++||+||+|+++.+ ...|+++.+++|+|+|||||||+++||+|.++++|++||++||+|+||++..|+.+
T Consensus 721 kLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g 800 (966)
T KOG4626|consen 721 KLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG 800 (966)
T ss_pred HHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc
Confidence 9999999999999876 66788899999999999999999999999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhH
Q 004753 512 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 591 (732)
Q Consensus 512 ~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s 591 (732)
+ ++++..++++|++++||+|.+-.. .++|+.++..+||+|||++++|+||++|.||+|||+|||+|+++++||++|
T Consensus 801 e---~rf~ty~~~~Gl~p~riifs~va~-k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~S 876 (966)
T KOG4626|consen 801 E---QRFRTYAEQLGLEPDRIIFSPVAA-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAAS 876 (966)
T ss_pred h---HHHHHHHHHhCCCccceeeccccc-hHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHH
Confidence 5 899999999999999999999877 699999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCchhh
Q 004753 592 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRM 671 (732)
Q Consensus 592 ~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 671 (732)
+|..+|++++|+.+.+||+++||+|++|.+.++.+|.++|..+..||+||.+.|+..||++|.+||.+||.|.+|.++|+
T Consensus 877 ll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~~G~~p~h~~m 956 (966)
T KOG4626|consen 877 LLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKYCSGEVPDHRRM 956 (966)
T ss_pred HHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhccCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccc
Q 004753 672 EMLQQQVVS 680 (732)
Q Consensus 672 ~~~~~~~~~ 680 (732)
+++|+.+.+
T Consensus 957 e~~~e~~hd 965 (966)
T KOG4626|consen 957 ENLQEEPHD 965 (966)
T ss_pred hccccCcCC
Confidence 999886554
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-98 Score=783.04 Aligned_cols=550 Identities=30% Similarity=0.486 Sum_probs=463.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 169 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 169 (732)
...-++..+...+.+++.++..+.. +...+...+....+.-....++..+|.+..++.+++......|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334666666666777887775433 47777778888888999999999999999999999988887777666655555
Q ss_pred H-HHhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 170 M-ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 170 ~-al~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
+ +....|++......+ +......|+..++...++++....|.++.....+.....++..+. ..
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~ 195 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EE 195 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hc
Confidence 4 888888887755544 888888899999999999999999998776666555544333332 23
Q ss_pred CCCChhHHHHHHHH-----HhhhccCCcHHHHHHHHHHHHHHhhhc---cCCCCCC-CCCCCCCCccccccCCCcccChh
Q 004753 243 DPDSRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWD-NTKDPERPLVIGYVSPDYFTHSV 313 (732)
Q Consensus 243 ~p~~~~a~~~~~la-----~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~lrIGyvS~d~~~h~v 313 (732)
.|.+........+. ..|+.. ++..-.....+..+.+.... ..++.|+ +.+.+++|+||||+|+|++.|+|
T Consensus 196 ~~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Hav 274 (620)
T COG3914 196 APTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAV 274 (620)
T ss_pred cchHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchH
Confidence 33333222222211 122221 23333333344444444222 2344554 23456789999999999999999
Q ss_pred hhhhhHHhccccCCcEEEEEEecc-ccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeCCCCCCCCc
Q 004753 314 SYFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNK 392 (732)
Q Consensus 314 ~~~~~~~l~~~d~~~fev~~y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~Dilvdl~g~t~~~~ 392 (732)
++++..++++|||++|||++|+++ ++.|+...|++..+ .+|.++.+|++.+++..|+.|+||||||++|||..+|
T Consensus 275 g~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r 350 (620)
T COG3914 275 GFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTR 350 (620)
T ss_pred HHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccc
Confidence 999999999999999999999998 66788888888877 4799999999999999999999999999999999999
Q ss_pred hhhhccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCcccCCccceEEcCCCccccCCCCCCCCCCC-----CCCCC
Q 004753 393 LGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCP-----TPALT 467 (732)
Q Consensus 393 ~~~~a~r~Apvq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~~~~-----~~~~~ 467 (732)
..|||+|||||||||+|||+|+|+|.|||+|+|.++.||+++.+|+|+|+|||. ||+|.+...++.+ .+++|
T Consensus 351 ~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lglp 427 (620)
T COG3914 351 CQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGLP 427 (620)
T ss_pred hhhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCCC
Confidence 999999999999999999999999999999999999999999999999999994 6888776554444 47899
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
++++||||||+.+|++|+++++|++||+++|+|+|||+++| .++.+..+++..++++||+.+|++|+|..+ +++|++.
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~-~~~h~a~ 505 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAP-NEDHRAR 505 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCC-CHHHHHh
Confidence 99999999999999999999999999999999999999876 677899999999999999999999999998 6899999
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHH
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 627 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 627 (732)
|..+||+|||+||+||||++|||||||||||+.|++|++|+|+||++++|++|+||+|+++||++||++++|...+++.|
T Consensus 506 ~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r 585 (620)
T COG3914 506 YGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVR 585 (620)
T ss_pred hchhheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 004753 628 MSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 661 (732)
Q Consensus 628 ~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 661 (732)
..++..+.++||||++.|+++||.+|.+||.++.
T Consensus 586 ~~l~~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 586 AELKRSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred HHHHhccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998874
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=4e-91 Score=740.99 Aligned_cols=351 Identities=45% Similarity=0.757 Sum_probs=284.0
Q ss_pred ccccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccC-ChhhHHHHHHHhhhCCeEEEccCCC-HHHHHHHHHhC
Q 004753 299 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 376 (732)
Q Consensus 299 lrIGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d 376 (732)
|||||+|+||++||+++++.+++.+||+++|||+||+.++.+ +..+.+++. ..++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~----~~~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRA----EADHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHH----HSEEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHH----hCCeEEECccCCcHHHHHHHHHHC
Confidence 799999999999999999999999999999999999987643 344555554 457999999986 57899999999
Q ss_pred CCcEEEeCCCCCCCCchhhhccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCcccCCccceEEcCCCccccCCC--
Q 004753 377 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS-- 454 (732)
Q Consensus 377 ~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~-- 454 (732)
+|||||||+|||.++|+.+|++|||||||+|||||+|||++.|||+|+|.+++|++.+.+|+|||+|||++|+|+.+.
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~ 156 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQM 156 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984100
Q ss_pred --------------------------------------------------------------------------------
Q 004753 455 -------------------------------------------------------------------------------- 454 (732)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (732)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T PF13844_consen 157 FPHLKERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIAS 236 (468)
T ss_dssp -GGGSS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHH
T ss_pred hhhhhhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHc
Confidence
Q ss_pred ----------------------------CCCCC-----CCCCCCCCCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcE
Q 004753 455 ----------------------------PEAGP-----VCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR 501 (732)
Q Consensus 455 ----------------------------~~~~~-----~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~ 501 (732)
.+.|. .+...+||+|+|||||||+++|++|+++++|++||+++|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~ 316 (468)
T PF13844_consen 237 GQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSR 316 (468)
T ss_dssp T-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEE
T ss_pred CCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcE
Confidence 01111 123457899999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCC
Q 004753 502 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 581 (732)
Q Consensus 502 l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g 581 (732)
|||...+. ..++++++.++++||+++||+|.+..+ ..+|+.+|+.+||+|||||||||||++|||||||||||++|
T Consensus 317 L~L~~~~~---~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 317 LWLLRFPA---SGEARLRRRFAAHGVDPDRIIFSPVAP-REEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp EEEEETST---THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred EEEeeCCH---HHHHHHHHHHHHcCCChhhEEEcCCCC-HHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99986553 345899999999999999999999876 78999999999999999999999999999999999999999
Q ss_pred CcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 582 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 582 ~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
++++||+|+|+|+++||+||||.|+++|+++|++|++|++.|+++|+++|+++.+|||||.++|+++||++|++||
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2e-31 Score=302.45 Aligned_cols=532 Identities=12% Similarity=0.048 Sum_probs=356.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 175 (732)
Q Consensus 96 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 175 (732)
++.-........|.+.+++.+||.+..+.|.+++|...++.++++.|++..+..+++.++.+.+++++|+..+++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333444455788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 004753 176 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 255 (732)
Q Consensus 176 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~l 255 (732)
|+++.+++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.+++.
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776655544432
Q ss_pred HHhh----hc----cCC----cHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCc-cccccCCCcccChhhhhhhHHhc
Q 004753 256 AMNY----IN----EGH----DDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPL-VIGYVSPDYFTHSVSYFIEAPLV 322 (732)
Q Consensus 256 a~~~----~~----~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-rIGyvS~d~~~h~v~~~~~~~l~ 322 (732)
-+.- +. +++ .-..+ ..+.....+ ...........|.+++ ||-++-..+.......++..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~ 305 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSIL-VLEKMLQEI----GRRRNAEYDAGPESFVGPVLMINGSLGAGGAERQFVNTAV 305 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeee-eHHHHHHHH----hhcCcccccCCCCCCcceEEEEeCCCCCCcHHHHHHHHHH
Confidence 1111 00 000 00000 000000000 0000011113355666 77788777776677777777777
Q ss_pred cccCCcE--------------EEEEEecc--ccCChhhHHHHHHHhhhCCeEEEccCC----------------------
Q 004753 323 YHDYQNY--------------KVVVYSAV--VKADAKTIRFREKVMKKGGIWRDIYGI---------------------- 364 (732)
Q Consensus 323 ~~d~~~f--------------ev~~y~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~---------------------- 364 (732)
+.++.++ +|++.+.. .+.+.....+++. +.....+...
T Consensus 306 ~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~----Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~l 381 (694)
T PRK15179 306 ALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADA----GIPVSVYSDMQAWGGCEFSSLLAPYREYLRFL 381 (694)
T ss_pred HHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhC----CCeEEEeccCCccCcccccccchhhHHHhhhc
Confidence 7666644 45554332 2223343334331 1111111110
Q ss_pred C------HHHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCC--CCeEE-ecccCCCCCCCC--------------Cc--
Q 004753 365 D------EKKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQV-TWIGYPNTTGLP--------------TI-- 419 (732)
Q Consensus 365 ~------~~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~--Apvq~-~~~g~p~t~g~~--------------~~-- 419 (732)
+ -..+.+.|++.++||+...+..+ +.++.++.+. .|+.+ +..+++...... .+
T Consensus 382 p~~~~~~~~~L~~~lk~~kpDIVH~h~~~a--~~lg~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~ 459 (694)
T PRK15179 382 PKQIIEGTTKLTDVMRSSVPSVVHIWQDGS--IFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRG 459 (694)
T ss_pred chhHHHHHHHHHHHHHHcCCcEEEEeCCcH--HHHHHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHHHHHHHHhcCC
Confidence 0 14678889999999996322211 1233344332 36655 444443211100 01
Q ss_pred cEEEecCCCCCcCc---ccCCccceEEcCCCcc--ccCCCCCCCC--CCCCCCCCCCCcEEEecCCC--CcCCHHHHHHH
Q 004753 420 DYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGP--VCPTPALTNGFITFGSFNNL--AKITPKVLQVW 490 (732)
Q Consensus 420 Dy~~~d~~~~p~~~---~~~~~E~l~~lp~~~~--~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~ 490 (732)
+.+++.....-... -..-.+++..+|+..= .|.|.+.... ..-...++++.+++++++|+ .|..+.+++++
T Consensus 460 ~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~ 539 (694)
T PRK15179 460 VALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAA 539 (694)
T ss_pred eEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHH
Confidence 22333211000000 1122467777887421 1222111000 00011235667789999987 79999999999
Q ss_pred HHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHh
Q 004753 491 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCES 569 (732)
Q Consensus 491 ~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~ea 569 (732)
+++++..|+.+|+|+|+| +.++.+++.++++|+ .+||.|+|... +....|..+||++-|+.+ +.+.+++||
T Consensus 540 a~l~~~~p~~~LvIvG~G----~~~~~L~~l~~~lgL-~~~V~flG~~~---dv~~ll~aaDv~VlpS~~Egfp~vlLEA 611 (694)
T PRK15179 540 QRFAASHPKVRFIMVGGG----PLLESVREFAQRLGM-GERILFTGLSR---RVGYWLTQFNAFLLLSRFEGLPNVLIEA 611 (694)
T ss_pred HHHHHHCcCeEEEEEccC----cchHHHHHHHHHcCC-CCcEEEcCCcc---hHHHHHHhcCEEEeccccccchHHHHHH
Confidence 999999999999999987 567889999999999 59999999854 566778889999999988 558999999
Q ss_pred hhcCCCeeecCCCcccccchhHHhhhcCCCccccC--C--HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 004753 570 LYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 645 (732)
Q Consensus 570 l~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~--~--~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~ 645 (732)
|+||+|||+.... |..-+..-|.+++++. | .+++.+...++..+......+++..+++.. ..|+++.+
T Consensus 612 MA~G~PVVat~~g------G~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~--~~FS~~~~ 683 (694)
T PRK15179 612 QFSGVPVVTTLAG------GAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWAS--ARFSLNQM 683 (694)
T ss_pred HHcCCeEEEECCC------ChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHH--HhCCHHHH
Confidence 9999999984322 1111222255666653 3 346666666666554444566666666553 34899999
Q ss_pred HHHHHHHHH
Q 004753 646 ALGLESTYR 654 (732)
Q Consensus 646 ~~~~e~~~~ 654 (732)
++.++++|+
T Consensus 684 ~~~~~~lY~ 692 (694)
T PRK15179 684 IASTVRCYQ 692 (694)
T ss_pred HHHHHHHhC
Confidence 999999995
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-32 Score=282.29 Aligned_cols=266 Identities=31% Similarity=0.515 Sum_probs=251.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 1 MQPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 1 ~a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
+|.+|.++|..+..+|+...|+..|+++++++|+...+|++||++|.+.+.+++|+.+|.+++.+.|++.. ++
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~-------a~ 289 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV-------AH 289 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh-------hc
Confidence 46688999999999999999999999999999999999999999999999999999999999999998754 45
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 160 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (732)
.+++.+|+.+|..+-|+..|++++++.|+.++++.++|.++...|+..+|..+|.+++.+.|+.+.+.++||.++.++|+
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
+++|...|+++++..|..+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+...|+++|.+++
T Consensus 370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 241 KIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 241 ~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
.++|...++..| ++..|-..|.-.+++..++..
T Consensus 450 ~~nPt~AeAhsN--Lasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 450 QINPTFAEAHSN--LASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred hcCcHHHHHHhh--HHHHhhccCCcHHHHHHHHHH
Confidence 999999999988 677788889988888776643
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=6.6e-24 Score=245.51 Aligned_cols=271 Identities=19% Similarity=0.204 Sum_probs=236.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..++..++.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778888999999999999999999988886 6788889999999999999999999999998888877777776665
Q ss_pred HhhhhH--------------------------------------------------------------------------
Q 004753 82 DLGTKV-------------------------------------------------------------------------- 87 (732)
Q Consensus 82 ~lg~~~-------------------------------------------------------------------------- 87 (732)
.+|..-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 544310
Q ss_pred -------------------hhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004753 88 -------------------KLEGDINQGVAYYKKALYYN---WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 145 (732)
Q Consensus 88 -------------------~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 145 (732)
...+++++|++.|+++++.. |....++..+|.++..+|++++|+..|+++++++|.+.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 01146778888888888764 66778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 225 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~ 225 (732)
..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++...+..+|.++..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 226 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 226 ~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
+|++++|+..|+++++..|++..++.. ++..+...|+.+++.+.++..
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~--lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNY--YGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999998887655 566777888888877765543
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=7.1e-23 Score=236.94 Aligned_cols=247 Identities=17% Similarity=0.198 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---------------
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP--------------- 67 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------- 67 (732)
..|+++|.+|..+|++++|+..++++++.+|++..+++.+|.+|..+|++++|+..|.++....+
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK 240 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999887655432211
Q ss_pred ---------------CC---------------------------------HHH---------------------------
Q 004753 68 ---------------NF---------------------------------EIA--------------------------- 72 (732)
Q Consensus 68 ---------------~~---------------------------------~~~--------------------------- 72 (732)
.+ ...
T Consensus 241 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a 320 (615)
T TIGR00990 241 KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA 320 (615)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 10 000
Q ss_pred ------HHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 004753 73 ------KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 146 (732)
Q Consensus 73 ------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (732)
....+.++..+|.++..+|++++|+..|+++++++|.+..++..+|.++...|++++|+..|+++++.+|+++.
T Consensus 321 l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 400 (615)
T TIGR00990 321 LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400 (615)
T ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 01123356677888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 226 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~ 226 (732)
+++.+|.++...|++++|+.+|+++++++|++...+.++|.++..+|++++|+..|+++++..|+++.++..+|.++..+
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChhH
Q 004753 227 GSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 227 g~~~eA~~~~~~al~l~p~~~~a 249 (732)
|++++|++.|+++++++|++...
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999986544
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=4.3e-22 Score=230.07 Aligned_cols=273 Identities=12% Similarity=0.040 Sum_probs=223.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++++.+|.+....|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++...+..++.++.
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~ 155 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV 155 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35788888888889999999999999999999988899999999999999999999999999988888777666655443
Q ss_pred Hhh--------------------------hhHhhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 82 DLG--------------------------TKVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFY 134 (732)
Q Consensus 82 ~lg--------------------------~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 134 (732)
..| ..+...|++++|+..++++++.+|. .......++.++...|++++|+..+
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 322 1234456666777766666666542 2333445577888889999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 135 ELAFHFNPHCAEACNNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 135 ~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 210 (732)
+++++.+|++..++.++|.++...|++++ |+..|+++++++|++..++..+|.++...|++++|+..++++++.+|
T Consensus 236 ~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 236 ESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999986 89999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHH
Q 004753 211 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 276 (732)
Q Consensus 211 ~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~ 276 (732)
+++.++..+|.+|...|++++|+..|+++++.+|++..... ..+..+...|+.+++.+.++...
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~--~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR--YAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH--HHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765433 24556677888888777665543
No 9
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-23 Score=225.07 Aligned_cols=238 Identities=24% Similarity=0.415 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------------hCCCCHHHHHHHHHHHHHC
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAAL----------------------------------ERPMYAEAYCNMGVIYKNR 49 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~----------------------------------~~p~~~~a~~~lg~~~~~~ 49 (732)
++.++|..|+++++|++|.++|+.+-+ .+|+.++.|..+|+||.-+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 467899999999999999999998732 3677889999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 50 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 129 (732)
Q Consensus 50 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 129 (732)
++++.|+++|++|++++|.+. .+|..+|.-+....++|+|..+|++++..+|.+-.+|+.+|.+|.++++++.
T Consensus 435 kdh~~Aik~f~RAiQldp~fa-------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFA-------YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hHHHHHHHHHHHhhccCCccc-------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence 999999999999999999864 4566677777778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 130 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 130 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
|+-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.+++..+++++|+..+++.-++.
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 210 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 210 p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
|++..+++.+|.+|.+.|+.+.|+..|.-|+.++|.-.+
T Consensus 588 P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999999999999999999999999997654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=4.9e-21 Score=235.82 Aligned_cols=268 Identities=16% Similarity=0.116 Sum_probs=235.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL----- 80 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----- 80 (732)
..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..++..++.++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 355888999999999999999999999999999999999999999999999999999999999987776665543
Q ss_pred ------------------------------HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 81 ------------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 130 (732)
Q Consensus 81 ------------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 130 (732)
..++..+...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 23566777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------------------------
Q 004753 131 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA--------------------------------------- 171 (732)
Q Consensus 131 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------------------------------- 171 (732)
+..++++++.+|+++..++.++..+...+++++|+..++++
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999998888887777777777777766542
Q ss_pred -HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 004753 172 -LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 172 -l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 250 (732)
++..|.++..+..+|.++...|++++|++.|+++++.+|+++.++..++.+|...|++++|++.|+++++..|++..+.
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~ 674 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ 674 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence 2246788888999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 251 QNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 251 ~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
.. ++..+...|+.+++.+.++..
T Consensus 675 ~~--la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 675 RR--VALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HH--HHHHHHhCCCHHHHHHHHHHH
Confidence 54 566677788888877665543
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=7.9e-21 Score=208.15 Aligned_cols=267 Identities=19% Similarity=0.190 Sum_probs=236.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
...|.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+... .....++..
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~~~~ 112 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR---EQRLLALQE 112 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH---HHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999988543322 123456778
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-----EACNNLGVIYKD 157 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~ 157 (732)
+|..|...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999887652 356789999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 158 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
.|++++|+.+|+++++..|++..++..+|.++...|++++|++.++++++.+|.+ ..++..++.+|...|++++|+..+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876 467888999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 237 EQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 237 ~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
+++++..|+.... ..++..+...|+.+++....++.
T Consensus 273 ~~~~~~~p~~~~~---~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 273 RRALEEYPGADLL---LALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHhCCCchHH---HHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999986433 45677788888888877665543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3.6e-21 Score=222.39 Aligned_cols=247 Identities=14% Similarity=0.034 Sum_probs=228.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA-- 79 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-- 79 (732)
++++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+....+......
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~ 189 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLN 189 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999887665443210
Q ss_pred -------------------------HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----H
Q 004753 80 -------------------------LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM----A 130 (732)
Q Consensus 80 -------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A 130 (732)
...++..+...|++++|+..++++++.+|++..++..+|.++...|++++ |
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 11234567788999999999999999999999999999999999999986 8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 131 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 131 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 210 (732)
+..|+++++++|++..++.++|.++...|++++|+..++++++++|+++.++.++|.++...|++++|+..|++++..+|
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 211 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 211 ~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
++...+..+|.++...|++++|+..|+++++.+|++..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 99888888899999999999999999999999998753
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=5.5e-21 Score=235.35 Aligned_cols=265 Identities=19% Similarity=0.218 Sum_probs=224.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH--HHH-----HHHH
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA--KNN-----MAIA 79 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~-----la~~ 79 (732)
.+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+.+|+++++.+|++... +.. ....
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 458899999999999999999999999999999999999999999999999999999999986532 111 1123
Q ss_pred HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH------
Q 004753 80 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV------ 153 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~------ 153 (732)
...+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++++|++..++..++.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 34567788889999999999999999999999999999999999999999999999999999988776655444
Q ss_pred ------------------------------------HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 154 ------------------------------------IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 197 (732)
Q Consensus 154 ------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 197 (732)
++...|++++|++.|+++++++|+++.+++.+|.+|...|++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHH--------------------------------------------------------------
Q 004753 198 AAEMIEKAIAANPTYAEA-------------------------------------------------------------- 215 (732)
Q Consensus 198 A~~~l~~al~~~p~~~~~-------------------------------------------------------------- 215 (732)
|+..++++++.+|+++..
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999998887766543
Q ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 216 ------------YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 216 ------------~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
+..+|.++.+.|++++|+..|+++++.+|++..++.+ ++..|...|+.+++.+..+
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~--la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLG--LIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHCCCHHHHHHHHH
Confidence 3456777788899999999999999999998887655 5666777788877766554
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=1.3e-20 Score=228.24 Aligned_cols=268 Identities=21% Similarity=0.232 Sum_probs=215.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-- 80 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-- 80 (732)
++|+.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 567888999999999999999999999999998999999999999999999999999999999888776665554433
Q ss_pred -------------------------HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 81 -------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 135 (732)
Q Consensus 81 -------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (732)
..+|.++...|++++|++.|++++...|++ ..+..++.++...|++++|++.++
T Consensus 682 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 335566677788888888888888877776 666777888888888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 136 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 215 (732)
Q Consensus 136 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 215 (732)
++++.+|++..+++.+|.++...|++++|+..|+++++..|+++.++.+++.++...|+ .+|+.+++++++..|+++..
T Consensus 761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 88888888888888888888888888888888888888888888888888888888888 77888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHH
Q 004753 216 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 216 ~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
+..+|.++...|++++|+++|+++++.+|.+..+..+ ++..+...|+.+++.+..++
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH--LALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHcCCHHHHHHHHHH
Confidence 8888888888888888888888888888876666554 45666777777776665543
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.9e-21 Score=197.78 Aligned_cols=244 Identities=20% Similarity=0.267 Sum_probs=222.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
|.++-+.|+-++.+|+|++|+++|.++++..|+.+..|.+++-||...|++++-++...++++++|++..+++..+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999998887777665443
Q ss_pred Hhh-----------------------------------------------------------------------------
Q 004753 82 DLG----------------------------------------------------------------------------- 84 (732)
Q Consensus 82 ~lg----------------------------------------------------------------------------- 84 (732)
.+|
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 332
Q ss_pred -----------------------------------------------------------hhHhhcCCHHHHHHHHHHHHH
Q 004753 85 -----------------------------------------------------------TKVKLEGDINQGVAYYKKALY 105 (732)
Q Consensus 85 -----------------------------------------------------------~~~~~~g~~~~A~~~~~~al~ 105 (732)
..++..|+...|...++++++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 223356778888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004753 106 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 185 (732)
Q Consensus 106 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 185 (732)
++|.+...|+.++.+|...++.++..+.|.+|..++|+++.+|+..|.+++-++++++|+.-|++++.++|++..++..+
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 186 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 186 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
+.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|++++++.|.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999998
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.8e-20 Score=201.25 Aligned_cols=270 Identities=17% Similarity=0.137 Sum_probs=226.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
.+++.+|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..|+++++..|.....+.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---- 145 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQ---- 145 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHH----
Confidence 578999999999999999999999998854332 357899999999999999999999999998887655444
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA-----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 153 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (732)
.++.++...|++++|++.++++++..|.+. ..+..+|.++...|++++|+++++++++.+|++..++..+|.
T Consensus 146 ---~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 146 ---QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred ---HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 455556667899999999999999887653 356789999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 154 IYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 154 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA 232 (732)
++...|++++|++.++++++.+|.+ ...+..++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHH
Confidence 9999999999999999999998876 457889999999999999999999999999998754 48999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHh
Q 004753 233 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFM 280 (732)
Q Consensus 233 ~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 280 (732)
+..++++++..|++......+...+.....|+..+++...+.+.++..
T Consensus 302 ~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 302 QALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 999999999999876543222122112224566777776666655443
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.2e-21 Score=207.69 Aligned_cols=264 Identities=21% Similarity=0.239 Sum_probs=222.7
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH-----
Q 004753 4 AYYNLGVVYS--ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM----- 76 (732)
Q Consensus 4 a~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----- 76 (732)
.+..+|..|. .+-+..+|+..|++.-...++...++..+|..|+++++|++|.++|+.+-++.|-..+....+
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 4555666554 455678999999997777888889999999999999999999999999998887543221111
Q ss_pred -----------H-----------HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 77 -----------A-----------IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 134 (732)
Q Consensus 77 -----------a-----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (732)
+ ..|..+|++|..+++.+.|+++|+++++++|.+..+|..+|.=+....++|.|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 1 245567888888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 004753 135 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 214 (732)
Q Consensus 135 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 214 (732)
++|+..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHH
Q 004753 215 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 269 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~ 269 (732)
..+..|.++..++++++|+..+++.-++.|+...++ .+++..|-..|..+.++
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~--~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVF--ALLGKIYKRLGNTDLAL 611 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHH--HHHHHHHHHHccchHHH
Confidence 999999999999999999999999999999876654 45677776666655443
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=2.7e-20 Score=219.86 Aligned_cols=238 Identities=16% Similarity=0.124 Sum_probs=217.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+|+++|.++.. +++++|+..|.+++...|+.. ....+|.++...|++++|+..|++++...|... .+ .
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~-------~ 546 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DL-------L 546 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HH-------H
Confidence 4689999999987 899999999999999999864 466778888899999999999999988766643 22 3
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.+|.++...|++++|+.+|+++++.+|.+...+..++......|++++|+..|+++++++|+ ..++.++|.++.+.|++
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH
Confidence 45566667889999999999999999999888888887788889999999999999999997 99999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
++|+..|+++++++|+++.++.++|.++...|++++|++.|+++++.+|+++.+++++|.++..+|++++|+.+|+++++
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChhHH
Q 004753 242 IDPDSRNAG 250 (732)
Q Consensus 242 l~p~~~~a~ 250 (732)
++|++..+.
T Consensus 706 l~P~~a~i~ 714 (987)
T PRK09782 706 DIDNQALIT 714 (987)
T ss_pred cCCCCchhh
Confidence 999876554
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=9.6e-20 Score=220.55 Aligned_cols=271 Identities=18% Similarity=0.159 Sum_probs=238.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH----
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA---- 77 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---- 77 (732)
++.++..|..+..+|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++..|........++
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999999999887654443333
Q ss_pred ------------------------HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 78 ------------------------IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 133 (732)
Q Consensus 78 ------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 133 (732)
.++..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|++.
T Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (899)
T TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181 (899)
T ss_pred HCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHH
Confidence 34456777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004753 134 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 134 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 213 (732)
++++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+...+..++.++...|++++|...++++++..|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (899)
T TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHH
Q 004753 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 214 ~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
..++..|.++...|++++|+..|+++++.+|++..+.. .++..+...|+.+++....+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~--~~~~~~~~~g~~~~A~~~~~~ 320 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALL--LAGASEYQLGNLEQAYQYLNQ 320 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHH--HHHHHHHHcCCHHHHHHHHHH
Confidence 88888999999999999999999999999888765543 345566677777766655443
No 20
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.3e-20 Score=187.98 Aligned_cols=263 Identities=24% Similarity=0.252 Sum_probs=227.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT--- 81 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--- 81 (732)
+.++.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+....+.++++
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 34667777778999999999998887 78888888999999999999999999999999998865443333333222
Q ss_pred ------------------------HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 82 ------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 137 (732)
Q Consensus 82 ------------------------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (732)
-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|
T Consensus 311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 24667778899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 138 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 138 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
++++|.+..+|+.+|+.|..++...=|+-+|++|++..|+++..|..||.||.+.++.++|+++|++++.....+..++.
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-----CCChhHHHHHHHHHhhhccCCcHHH
Q 004753 218 NLGVLYRDAGSISLAIDAYEQCLKID-----PDSRNAGQNRLLAMNYINEGHDDKL 268 (732)
Q Consensus 218 ~La~~~~~~g~~~eA~~~~~~al~l~-----p~~~~a~~~~~la~~~~~~~~~~~a 268 (732)
.||.+|.++++.++|..+|++.++.. -++........++..+...++++++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 99999999999999999999999843 2222222333455555566665554
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.2e-20 Score=194.32 Aligned_cols=240 Identities=20% Similarity=0.245 Sum_probs=221.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 1 MQPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 1 ~a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
|++++...|..++..|++..|...|+++++++|.+...|..+|.+|...++.++..+.|.++.+++|++++.++..+..+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999998877776666
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 160 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (732)
+-+. ++++|+.-|++++.++|++.-++..++.+.++++++++++..|+.+.+..|+.++.+...|.++..+++
T Consensus 405 flL~-------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 405 FLLQ-------QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHH-------HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence 6655 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 161 LDKAVECYQMALSIKPN------FSQSLNNLGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 233 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~ 233 (732)
+++|++.|.+++.+.|. ++..+...|.+.. ..+++.+|+.+++++++++|....++..||.+..++|+.++|+
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999998 5655655554433 3689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCh
Q 004753 234 DAYEQCLKIDPDSR 247 (732)
Q Consensus 234 ~~~~~al~l~p~~~ 247 (732)
++|+++..+...-.
T Consensus 558 elFEksa~lArt~~ 571 (606)
T KOG0547|consen 558 ELFEKSAQLARTES 571 (606)
T ss_pred HHHHHHHHHHHhHH
Confidence 99999988765433
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=5.9e-19 Score=208.52 Aligned_cols=233 Identities=13% Similarity=0.045 Sum_probs=214.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhh
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 85 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 85 (732)
..+|..+...|++++|+..|++++...|.. ..++.+|.++...|++++|+.+|+++++..|++..... .++.
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~-------~La~ 584 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW-------WLHA 584 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH-------HHHH
Confidence 445666789999999999999987776654 56789999999999999999999999999988754332 2333
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 165 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (732)
.....|++++|+..|+++++.+|+ ..++.++|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344568999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 166 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 166 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
+.|+++++++|+++.++.++|.++...|++++|+.+|++++++.|++..+....|.+.....+++.|.+.+++...++|+
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ch
Q 004753 246 SR 247 (732)
Q Consensus 246 ~~ 247 (732)
..
T Consensus 744 ~~ 745 (987)
T PRK09782 744 SS 745 (987)
T ss_pred ch
Confidence 76
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=1.2e-18 Score=198.38 Aligned_cols=216 Identities=16% Similarity=0.105 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhH
Q 004753 17 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR---------GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 87 (732)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 87 (732)
.+++|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++++|++..++..++. ++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~-------~~ 348 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGL-------IN 348 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHH-------HH
Confidence 345666666666666666666666666655432 23566666666666666666554443333 33
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 88 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 167 (732)
Q Consensus 88 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (732)
...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+...+..++.+++..|++++|+..
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 33456666666666666666666666666666666666666666666666666666655555555555556666666666
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 168 YQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 168 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
++++++.. |+++.++.++|.++..+|++++|+..+++.....|....+...++..|...|+ +|...+++.++
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 66666553 55666666666666666666666666666666666666666666666666653 45555554443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1e-17 Score=197.77 Aligned_cols=272 Identities=15% Similarity=0.092 Sum_probs=219.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+++..+|.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++...+..++.++..
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888 88888888888999999999999988888887665544433210
Q ss_pred --------------------------------------------------------------------------------
Q 004753 83 -------------------------------------------------------------------------------- 82 (732)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (732)
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence
Q ss_pred -hhhhHhhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 004753 83 -LGTKVKLEGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 156 (732)
Q Consensus 83 -lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 156 (732)
++ .+...|++++|+..|+++++..+.. ..+...+|.+|...|++++|+..|+++++.+|.+ ......++.++.
T Consensus 243 ~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 01 1234567777888888877765432 2234446889999999999999999998887765 456777888889
Q ss_pred HcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
..|++++|+..++++.+..|. ...++..++.++...|++++|++.+++++...|++..++..+|.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999888762 23467889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHHH
Q 004753 222 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 278 (732)
Q Consensus 222 ~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 278 (732)
++...|++++|++.++++++++|++...... .++.++..++.+++....+...+.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~--~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVE--QAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999886654 566778888888887777665543
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.6e-18 Score=176.29 Aligned_cols=232 Identities=21% Similarity=0.322 Sum_probs=205.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH-------------------------------HHHHHHHHHCCCH
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERPMYA---EAY-------------------------------CNMGVIYKNRGDL 52 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~-------------------------------~~lg~~~~~~g~~ 52 (732)
..|.+.+.+.++++|+..|+...+.+|-.. +.+ ...|+.|.-.++.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 467888999999999999999999888521 111 1235566667889
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 53 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 132 (732)
Q Consensus 53 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (732)
++|+.+|+++++++|+...+|. .+|.-|..+.+...|++.|++|++++|.+-.+|+.+|+.|..++...=|+-
T Consensus 347 EKAv~YFkRALkLNp~~~~aWT-------LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWT-------LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHH-------HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence 9999999999999998765554 466666677799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 004753 133 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---- 208 (732)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---- 208 (732)
+|++|++..|++...|..||.+|.+.++.++|+++|.+++.....+..++..+|.+|.+.++.++|..+|++.++.
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999989999999999999999999999999999983
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 209 ---NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 209 ---~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
.|....+...|+..+.+.+++++|..+..+++.-++.
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 4555677788999999999999999999888876444
No 26
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.4e-18 Score=180.79 Aligned_cols=235 Identities=23% Similarity=0.299 Sum_probs=204.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhc
Q 004753 11 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 90 (732)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~ 90 (732)
++.+.|+..+-..+-.+.++..|+.+..|+..|..|+..|++.+|..+|.|+-.++|....+|...|.++. ..
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-------~e 359 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-------GE 359 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-------hc
Confidence 44444554444444445555677777889999999999999999999999999999999877766555544 46
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 91 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170 (732)
Q Consensus 91 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 170 (732)
++.++|+.+|..|-++.|........+|.-|...++++.|.++|.+|+.+.|.++-.+..+|.+.+..+.|.+|..+|++
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 69999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 171 ALSIKP-------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 171 al~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
++..-+ .....+.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.++
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 984321 2234689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHH
Q 004753 244 PDSRNAGQN 252 (732)
Q Consensus 244 p~~~~a~~~ 252 (732)
|++..+..-
T Consensus 520 p~n~~~~~l 528 (611)
T KOG1173|consen 520 PDNIFISEL 528 (611)
T ss_pred CccHHHHHH
Confidence 998766543
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=9.3e-18 Score=191.01 Aligned_cols=224 Identities=14% Similarity=0.084 Sum_probs=195.4
Q ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhh--HhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 39 YCNMGVIYKNR---GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADA 113 (732)
Q Consensus 39 ~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~ 113 (732)
++..|..+... +.+++|+.+|+++++++|++..++..++.++..++.. ....+++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 44556544443 4578999999999999999999998888887766542 224567999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004753 114 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193 (732)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 193 (732)
+..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777787888899
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCC
Q 004753 194 KMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 264 (732)
Q Consensus 194 ~~~eA~~~l~~al~~~-p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~ 264 (732)
++++|+..++++++.. |+++..+..+|.+|..+|++++|...+++.....|+...+.. .++..|+..|+
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 490 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVN--LLYAEYCQNSE 490 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHH--HHHHHHhccHH
Confidence 9999999999999875 788999999999999999999999999999888887655543 34555666553
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=1.1e-19 Score=189.63 Aligned_cols=261 Identities=23% Similarity=0.257 Sum_probs=121.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
+.+|..++..|++++|++.+++.+.. .|++...|..+|.+....+++++|+..|++++..++..+..... +
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~-------l 84 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYER-------L 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------c
Confidence 46799999999999999999776554 48889999999999999999999999999999998876654433 3
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~ 161 (732)
..+ ...+++++|+++++++.+..+ ++..+..+..++...++++++...++++.... +.++..+..+|.++.+.|+.
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 333 356799999999999987664 56777788889999999999999999987654 67889999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
++|+..|+++++.+|+++.+...++.++...|+++++.+.++...+..|+++..+..+|.+|..+|++++|+.+|+++++
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 242 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 242 l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
.+|+++..... ++..+...|..+++.+..++..+
T Consensus 243 ~~p~d~~~~~~--~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLA--YADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHH--HHHHHT-----------------
T ss_pred ccccccccccc--ccccccccccccccccccccccc
Confidence 99999887665 66777788888888877665433
No 29
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=184.21 Aligned_cols=233 Identities=22% Similarity=0.323 Sum_probs=203.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhh
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 85 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 85 (732)
|..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.++...++..|.+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN--- 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN--- 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh---
Confidence 56799999999999999999999999999999999999999999999999999999999999998887777666666
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYADAMYN-------LGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 156 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~ 156 (732)
.|.-.+|++++.+-+...|.....-.. ...-......+..-.++|..+....| .+++++..||.+|.
T Consensus 366 ----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 366 ----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred ----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 558889999999999887754321110 00000111124455667777777777 68999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
..|+|++|+.+|+.||..+|++...|+.||-.+..-.+.++|+..|++|+++.|.+..++++||..+..+|.|++|.++|
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC
Q 004753 237 EQCLKIDPD 245 (732)
Q Consensus 237 ~~al~l~p~ 245 (732)
-.+|.+.+.
T Consensus 522 L~AL~mq~k 530 (579)
T KOG1125|consen 522 LEALSMQRK 530 (579)
T ss_pred HHHHHhhhc
Confidence 999999776
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=1.4e-17 Score=174.29 Aligned_cols=224 Identities=17% Similarity=0.167 Sum_probs=178.6
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhc
Q 004753 15 LMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 90 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~ 90 (732)
.++.+.++..+.+++...+ ..+..++.+|.+|...|++++|+..|+++++++|++..++.. +|..+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~-------lg~~~~~~ 111 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNY-------LGIYLTQA 111 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH-------HHHHHHHC
Confidence 4566889999999996443 347789999999999999999999999999999999766655 45555556
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 91 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170 (732)
Q Consensus 91 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 170 (732)
|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++++|+++..... ..+....+++++|+..+++
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999998742222 2334567899999999988
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 171 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA-------IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 171 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a-------l~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
+....+... +. .+.++...|+..++ +.++.+ +++.|...++|+++|.++..+|++++|+.+|+++++.+
T Consensus 191 ~~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 191 RYEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 775543222 22 35555566666443 233333 35566778899999999999999999999999999999
Q ss_pred C-CChhHH
Q 004753 244 P-DSRNAG 250 (732)
Q Consensus 244 p-~~~~a~ 250 (732)
| ++.+.+
T Consensus 267 ~~~~~e~~ 274 (296)
T PRK11189 267 VYNFVEHR 274 (296)
T ss_pred CchHHHHH
Confidence 7 544443
No 31
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.80 E-value=2.6e-17 Score=179.12 Aligned_cols=266 Identities=17% Similarity=0.140 Sum_probs=173.8
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCc---hhhhccCCC--CeEEec-ccCCCCCCCCCc----------c--EEEecCCC
Q 004753 367 KKVAAMVREDKIDILVELTGHTANNK---LGMMACQPA--PVQVTW-IGYPNTTGLPTI----------D--YRITDSLA 428 (732)
Q Consensus 367 ~~~~~~i~~d~~Dilvdl~g~t~~~~---~~~~a~r~A--pvq~~~-~g~p~t~g~~~~----------D--y~~~d~~~ 428 (732)
..++..|++.++||+ ||...+ .+.++.+.| ||-++. .|++...+-..+ + +..+| ++
T Consensus 270 ~~l~~~ir~~rpDIV-----Ht~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v 343 (578)
T PRK15490 270 KHLVPHLCERKLDYL-----SVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FM 343 (578)
T ss_pred HHHHHHHHHcCCCEE-----EEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hh
Confidence 568999999999999 665433 444555555 665554 334432222110 1 11122 11
Q ss_pred CCcCc-c-------cCCccceEEcCCCccc--cCCCCCCC-CCCC--CCCCCCCCcEEEecCCC--CcCCHHHHHHHHHH
Q 004753 429 DPPET-K-------QKHVEELIRLPECFLC--YTPSPEAG-PVCP--TPALTNGFITFGSFNNL--AKITPKVLQVWARI 493 (732)
Q Consensus 429 ~p~~~-~-------~~~~E~l~~lp~~~~~--~~~~~~~~-~~~~--~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~i 493 (732)
.-... . ..-.+++..+|+..-. |.|....+ ..+. ...++++.+++|+++++ .|....++++++++
T Consensus 344 ~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~l 423 (578)
T PRK15490 344 SNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARY 423 (578)
T ss_pred hccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHH
Confidence 11111 1 1225678888874311 22321111 0000 12345566789999887 89999999999999
Q ss_pred HhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCC-cccHHHhhhc
Q 004753 494 LCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYM 572 (732)
Q Consensus 494 l~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g-~~t~~eal~~ 572 (732)
++..|+.+|+++|+| +.++.+++.++++|+ .++|.|+|.. .+....|..+|||+-|+.+.| +.+++|||++
T Consensus 424 lk~~pdirLvIVGdG----~~~eeLk~la~elgL-~d~V~FlG~~---~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~ 495 (578)
T PRK15490 424 LQHHPATRFVLVGDG----DLRAEAQKRAEQLGI-LERILFVGAS---RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMV 495 (578)
T ss_pred HhHCCCeEEEEEeCc----hhHHHHHHHHHHcCC-CCcEEECCCh---hhHHHHHHhCCEEEEcccccCccHHHHHHHHh
Confidence 999999999999987 678899999999999 5899999984 466777888999999998855 9999999999
Q ss_pred CCCeeecCCCcccccch-hHHhhhcCCCccccC--CHHHH---HHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 004753 573 GVPCVTMAGSVHAHNVG-VSLLTKVGLKHLIAK--NEDEY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 646 (732)
Q Consensus 573 GvPvvt~~g~~~~~r~~-~s~l~~~gl~~~ia~--~~~~y---~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~ 646 (732)
|+|||+.. +| ..-+..-|..++++. |.++. +..+.++..+...+..+.+..++.+. ..|+.+.++
T Consensus 496 GlPVVATd-------vGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~--e~FS~e~Mv 566 (578)
T PRK15490 496 GVPVISTP-------AGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQ--ERFTVEHMV 566 (578)
T ss_pred CCCEEEeC-------CCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCHHHHH
Confidence 99999843 33 111112255555543 33333 33345555555555566677777654 459999999
Q ss_pred HHHHHHHHH
Q 004753 647 LGLESTYRN 655 (732)
Q Consensus 647 ~~~e~~~~~ 655 (732)
..++++|..
T Consensus 567 ~~y~ki~~~ 575 (578)
T PRK15490 567 GTFVKTIAS 575 (578)
T ss_pred HHHHHHHHh
Confidence 999998863
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=3.8e-17 Score=164.26 Aligned_cols=203 Identities=24% Similarity=0.289 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 35 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 114 (732)
Q Consensus 35 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 114 (732)
....+..+|.++...|++++|+..++++++..|++...+..++.++... |++++|++.++++++..|.+..++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------~~~~~A~~~~~~al~~~~~~~~~~ 102 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-------GELEKAEDSFRRALTLNPNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhCCCCHHHH
Confidence 3677888888888888888888888888888888877777777777664 488888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 115 YNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
.++|.++...|++++|++.+++++... +.....+..+|.++...|++++|...++++++..|++...+..+|.++...
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 888888888888888888888888753 445677888888888889999999999998888888888888889999899
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 193 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999988888888888888888888888999998888887766543
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=9.5e-17 Score=189.52 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
.++..+|..+...|++++|+.+|+++++.+|.++.++..++.++...|++++|+..++++++..|++.. +..++.
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~---- 124 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY---- 124 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH----
Confidence 468999999999999999999999999999999999999999999999999999999999999999986 555444
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 131 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 131 (732)
++...|++++|+..++++++..|++..++..++.++...+..++|+
T Consensus 125 ---~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 125 ---VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred ---HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 4445679999999999999999988888777777766555544333
No 34
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=167.68 Aligned_cols=240 Identities=20% Similarity=0.204 Sum_probs=219.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhh
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 85 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 85 (732)
..+|.||+..|.+.+|.+.++.+++..|. ++.+..|+.+|.+..+...|+..+.+.++..|.+......+ +.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------AR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh-------HH
Confidence 36899999999999999999999998775 78899999999999999999999999999999887554444 44
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 165 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (732)
++..++++++|.++|+.+++.+|.+.++...+|.-|+.-++.+-|+.+|++.+++.-.+++.+.|+|.+....++++-++
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 55556699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 166 ECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 166 ~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
..|++++.... .-.+.|+|+|.+....|++..|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999998743 336799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHH
Q 004753 243 DPDSRNAGQNR 253 (732)
Q Consensus 243 ~p~~~~a~~~~ 253 (732)
.|+-.+...|+
T Consensus 459 ~P~m~E~~~Nl 469 (478)
T KOG1129|consen 459 MPDMAEVTTNL 469 (478)
T ss_pred Cccccccccce
Confidence 99877666653
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=5.7e-17 Score=162.94 Aligned_cols=201 Identities=21% Similarity=0.194 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+..++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|++.++++++..|++...+.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN------ 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH------
Confidence 45677888888888888888888888888888888888888888888888888888888888888877654443
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 159 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 159 (732)
++.++...|++++|++.+++++... +.....+..+|.++...|++++|...++++++.+|++...+..++.++...|
T Consensus 105 -~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 -YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred -HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 4444455668888888888887653 4456677788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 160 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
++++|..+++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88888888888888877777777778888888888888888777665543
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=8.1e-17 Score=152.32 Aligned_cols=207 Identities=21% Similarity=0.196 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 115 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 115 (732)
..+...||.-|++.|++..|.+.++++++.+|++..++..++.+|.. .|+.+.|.+.|+++++++|++.++++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-------~Ge~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-------LGENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------cCChhhHHHHHHHHHhcCCCccchhh
Confidence 45788899999999999999999999999999988776665555544 55999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004753 116 NLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193 (732)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 193 (732)
|.|..++.+|++++|...|++|+.. .+..+..+.|+|.|..+.|+++.|..+|+++++++|+++.....++..++..|
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAG 187 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcc
Confidence 9999999999999999999999875 44557888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 194 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 194 ~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
+|-.|..++++.....+-..+.+.....+-...|+-+.+..+=.+..+..|...+.
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999888877778888888888888999998888888888888886654
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=6.7e-17 Score=169.18 Aligned_cols=216 Identities=18% Similarity=0.160 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+..|+.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.+++.++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l- 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL- 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 4679999999999999999999999999999999999999999999999999999999999999999887665555444
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
...|++++|++.++++++.+|+++..... ..+....+++++|+..+++++...+... + ..+..+...|+.
T Consensus 143 ------~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~-~~~~~~~~lg~~ 212 (296)
T PRK11189 143 ------YYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKEQ--W-GWNIVEFYLGKI 212 (296)
T ss_pred ------HHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCccc--c-HHHHHHHHccCC
Confidence 45679999999999999999998742222 2234567889999999988775533222 2 134555556665
Q ss_pred HHH--HHHHH----HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Q 004753 162 DKA--VECYQ----MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-TYAEAYNNLGVLYRDAGS 228 (732)
Q Consensus 162 ~~A--~~~~~----~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~La~~~~~~g~ 228 (732)
.++ ++.+. ...++.|...++|+++|.++..+|++++|+.+|+++++.+| ++.+..+.+..+....++
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 433 33332 22355667788999999999999999999999999999996 667777766666555443
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.7e-18 Score=180.47 Aligned_cols=231 Identities=21% Similarity=0.198 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+.|..+|......+++++|+..|++++..++.++..+..++.+ ...+++++|+++++++.+..++ +..+. .
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~~l~-------~ 115 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-PRYLL-------S 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-cchhh-------H
Confidence 3566788999999999999999999999999988888888888 7999999999999999876653 22222 2
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 160 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (732)
...++...++++++...++++.... +.++..+..+|.++.+.|+.++|++.|+++++.+|++..+...++.++...|+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 3344556789999999999987655 67888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
++++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..++++++
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 004753 241 KI 242 (732)
Q Consensus 241 ~l 242 (732)
+.
T Consensus 276 ~~ 277 (280)
T PF13429_consen 276 RL 277 (280)
T ss_dssp --
T ss_pred cc
Confidence 53
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-16 Score=168.43 Aligned_cols=262 Identities=19% Similarity=0.222 Sum_probs=232.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+.....+..++..++|.+..++++..++.+|-+..++-..--++.++|+..+=..+-.+..+..|+.+..|+..|..|..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 34566788899999999999999999999998877766555599999999998888899999999988777665555544
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
.|++.+|..+|.|+..++|....+|...|..+...++.++|+.+|..|-++-|........+|.-|..+++++
T Consensus 325 -------i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 325 -------IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred -------hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 5699999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLAIDA 235 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-------~~~~~~~~La~~~~~~g~~~eA~~~ 235 (732)
-|.++|.+|+.+.|.++-.+..+|.+.+..+.|.+|..+|++++..-+ .....+.+||.+|.+++++++|+.+
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999985422 1235688999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 236 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 236 ~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
|++++.+.|.+.+.+.. ++..|.-.|..+.+++.+.
T Consensus 478 ~q~aL~l~~k~~~~~as--ig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHAS--IGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHcCCCchhHHHH--HHHHHHHhcChHHHHHHHH
Confidence 99999999999988765 5667777888888777544
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=1.8e-16 Score=150.08 Aligned_cols=208 Identities=21% Similarity=0.156 Sum_probs=191.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.+..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999887777665555
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 159 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 159 (732)
. +|++++|...|++++.. .+..+..+.|+|.|..+.|+++.|.++|+++++++|+.+.....++..++..|
T Consensus 115 ~-------qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 115 A-------QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAG 187 (250)
T ss_pred h-------CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcc
Confidence 4 67999999999999974 35567899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 160 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
++..|..++++.....+-..+.+.....+-...|+-+.|-++=.+.....|...+.-
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999988888888888888889999999999999888888899876643
No 41
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.77 E-value=1.2e-16 Score=173.88 Aligned_cols=239 Identities=23% Similarity=0.312 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKN 74 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 74 (732)
+..+++..|..+|+|++|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+... ....+.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4566999999999999999999999997 5555566667999999999999999999999987431 112233
Q ss_pred HHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Q 004753 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--------YADAMYNLGVAYGEMLKFDMAIVFYELAFHF------ 140 (732)
Q Consensus 75 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 140 (732)
..+.++.+|+..|...|++++|..++++++++... -...+.+++.++..++++++|+.++++++++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 55788899999999999999999999999987422 2456889999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 004753 141 --NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-- 208 (732)
Q Consensus 141 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-- 208 (732)
++..+..+.+||.+|..+|++++|.+++++++++. +.....++++|..|.+.+++.+|.+.|.+++.+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 23447789999999999999999999999999874 233558899999999999999999999999876
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 209 -----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 209 -----~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999998743
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=6.9e-16 Score=170.47 Aligned_cols=260 Identities=20% Similarity=0.231 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
.+...|+.++..|++++|+.++.++++++|.++.+|+.||.+|.++|+.++|...+-.|-.++|++.+.|..++.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~- 219 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ- 219 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-
Confidence 4667788889999999999999999999999999999999999999999999999999999999998877765554444
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHH-----------
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEA----------- 147 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~----------- 147 (732)
+|++++|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++.+.|.. ...
T Consensus 220 ------~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 220 ------LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred ------cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 5699999999999999999999999999999999999999999999999998831 011
Q ss_pred -------------------------HHHHHHHHHHcCCHHHHHHHHHHHHh----------------------h------
Q 004753 148 -------------------------CNNLGVIYKDRDNLDKAVECYQMALS----------------------I------ 174 (732)
Q Consensus 148 -------------------------~~~la~~~~~~g~~~~A~~~~~~al~----------------------~------ 174 (732)
+..++.++.....++.|......... .
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 11233344444444444443332222 0
Q ss_pred ---------------------------------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Q 004753 175 ---------------------------------K---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-TYAEAYN 217 (732)
Q Consensus 175 ---------------------------------~---p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~ 217 (732)
+ .+.++.+..++.+|...|++.+|+.+|..+....+ ++..+|+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 0 11244678899999999999999999999987755 3467899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHH
Q 004753 218 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 272 (732)
Q Consensus 218 ~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~ 272 (732)
.+|.||..+|.+++|+++|++++.+.|++.+++.. ++..+...|+.+++.+..
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~--Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT--LASLYQQLGNHEKALETL 506 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh--HHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999998775 677778888888777654
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.76 E-value=5.3e-16 Score=153.51 Aligned_cols=246 Identities=16% Similarity=0.172 Sum_probs=144.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD-- 82 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 82 (732)
++.+|..++..|++.+|+..|..+++.+|++..+++..|.+|+..|+-.-|+..+.+++++.|+...+....+.++..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 455666666666666666666666666666666666665555555555555555555555555544333332222222
Q ss_pred ----------------------------------------hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 83 ----------------------------------------LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 122 (732)
Q Consensus 83 ----------------------------------------lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 122 (732)
....+...|+...|+++..+.+++.|-++..+...+.+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 1222333455556666666666666666666666677777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH-------------------
Q 004753 123 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------------------- 183 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------- 183 (732)
..|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+...++-
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777766533211
Q ss_pred -------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 184 -------------------------------NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 184 -------------------------------~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA 232 (732)
.+..|+...+++.+|+..+.+++..+|++.+++...+.+|.....|+.|
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence 1122333444555555555555555555555566666666555566666
Q ss_pred HHHHHHHHhhCCCChhHH
Q 004753 233 IDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 233 ~~~~~~al~l~p~~~~a~ 250 (732)
+.-|+++.+.++++..+.
T Consensus 361 I~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 361 IHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHHhcCcccHHHH
Confidence 666666666665555444
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.4e-16 Score=173.78 Aligned_cols=256 Identities=21% Similarity=0.263 Sum_probs=216.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004753 1 MQPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 79 (732)
Q Consensus 1 ~a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 79 (732)
+++.+|.+|.+|..+|+|++|..+|.++++.++++ .-.++.+|..|+..|+++.|..+|++.++..|++.+....++..
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 36789999999999999999999999999999887 77889999999999999999999999999999998887777777
Q ss_pred HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Q 004753 80 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----NPHCAEACNNLGVI 154 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~ 154 (732)
|...+ ......++|..+..++++..|.+.++|..++.++....-+.. +.+|.+|+.+ .+--++.++++|..
T Consensus 386 ya~~~---~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 386 YAHSA---KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHhhh---hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 66654 233467889999999999999999999999998877655554 8888888853 33447899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 155 YKDRDNLDKAVECYQMALSI-----KPNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 224 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~ 224 (732)
++..|++++|...|.+++.. +++. ....+++|.++...++++.|.+.|...++.+|.+..++..+|....
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 99999999999999999876 2221 2357899999999999999999999999999999999999998888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhcc
Q 004753 225 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 262 (732)
Q Consensus 225 ~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~ 262 (732)
..++..+|...++.++..+..+++++.- ++..|+..
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k 577 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKK 577 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhh
Confidence 8899999999999999999999988764 44445443
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.6e-16 Score=173.55 Aligned_cols=268 Identities=20% Similarity=0.207 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+++..|.+.+..++|..|+.+|++++..+|. -+.....+|.|+.++|+.+.|+..|+++++++|.+..+...++..-..
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~ 245 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLN 245 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 4556677778899999999999999998886 355677888999999999999999999999999776665554433322
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcC
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRD 159 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g 159 (732)
......+..++..+.++...++.++.+...|+..++..|+|+.+..+...++..... .++.++.+|.+|..+|
T Consensus 246 ----~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 246 ----FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred ----ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 223356788999999999999999999999999999999999999999999887533 3567999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHH
Q 004753 160 NLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG----SISLAID 234 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g----~~~eA~~ 234 (732)
+|++|..+|.++++.++++ .-.++.+|..|...|+++.|+.+|++.++..|++.++...||.+|...+ ..++|..
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 9999999999999999888 6788899999999999999999999999999999999999999998876 6788999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHHH
Q 004753 235 AYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 278 (732)
Q Consensus 235 ~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 278 (732)
+..++++..|.+.+++..+ +..+.. ++.-..+.++......
T Consensus 402 ~l~K~~~~~~~d~~a~l~l--aql~e~-~d~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLEL--AQLLEQ-TDPWASLDAYGNALDI 442 (1018)
T ss_pred HHHHHHhcccccHHHHHHH--HHHHHh-cChHHHHHHHHHHHHH
Confidence 9999999999988887653 333333 3333335554444433
No 46
>PLN02789 farnesyltranstransferase
Probab=99.75 E-value=6.9e-16 Score=161.24 Aligned_cols=219 Identities=12% Similarity=0.061 Sum_probs=192.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++-.+-.++...+++++|+..+.++++++|++..+|...+.++..+| ++++++..++++++.+|++..++...+.++.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 344444445677889999999999999999999999999999999998 6899999999999999999988888877776
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--- 158 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 158 (732)
.++. ..+++++.+++++++.+|++..+|...+.++...|++++++++++++++.+|.+..+|+..+.++...
T Consensus 118 ~l~~-----~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 118 KLGP-----DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HcCc-----hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 6552 12477899999999999999999999999999999999999999999999999999999999988776
Q ss_pred CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 159 DNL----DKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 226 (732)
Q Consensus 159 g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~ 226 (732)
|.+ ++++++..+++..+|++..+|..++.++.. .++..+|++.+.+++..+|.++.++..|+.+|...
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 333 578899999999999999999999999988 45677899999999999999999999999999864
No 47
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.3e-16 Score=164.48 Aligned_cols=246 Identities=22% Similarity=0.276 Sum_probs=225.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+...-.+|...+...++..|++.|.++++++ .+...+.+.+.+|+..|.+.+++....++++........+..++.++.
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999 888899999999999999999999999999988877777778899999
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.+|..|...++++.|+.+|++++..... ..+..+....+++++..+...-++|.-..--..-|..++..|+|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 9999999999999999999998876544 56667778888999988888888998888888889999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
.+|+.+|.+++..+|+++..|.|.|.||.++|++..|++..+++++++|+....|...|.++..+.+|++|++.|+++++
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHH
Q 004753 242 IDPDSRNAGQNRLLA 256 (732)
Q Consensus 242 l~p~~~~a~~~~~la 256 (732)
.+|++.++...+.-+
T Consensus 455 ~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRC 469 (539)
T ss_pred cCchhHHHHHHHHHH
Confidence 999988876554433
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.2e-15 Score=150.41 Aligned_cols=239 Identities=21% Similarity=0.278 Sum_probs=216.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhh
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 85 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 85 (732)
|..|..+.-.++.++|+..|...++.+|...++...||+.|...|..+.|+..-+..++ .|+... .....++..+|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~--~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTF--EQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCch--HHHHHHHHHHHH
Confidence 56788888899999999999999999999999999999999999999999998776554 565542 344567889999
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCC
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEACNNLGVIYKDRDN 160 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~ 160 (732)
-|+..|-++.|...|....+...--..+...|..+|....+|++|++..++..++.++. +..|..++..+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999987666667899999999999999999999999999997765 5678889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
.++|...+.++++.+|+...+-..+|.++...|+|++|++.++.+++.+|+. +++...|..+|..+|+.++.+..+.++
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 578889999999999999999999999
Q ss_pred HhhCCCCh
Q 004753 240 LKIDPDSR 247 (732)
Q Consensus 240 l~l~p~~~ 247 (732)
.+..++..
T Consensus 276 ~~~~~g~~ 283 (389)
T COG2956 276 METNTGAD 283 (389)
T ss_pred HHccCCcc
Confidence 99887643
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=6.9e-15 Score=161.48 Aligned_cols=261 Identities=15% Similarity=0.034 Sum_probs=216.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHh
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDL 83 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~l 83 (732)
....|......|+++.|.+.+.++.+..|+....+...|.++..+|++++|.++++++.+..|+... ... ..
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~-------~~ 159 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEI-------AR 159 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHH-------HH
Confidence 4567888889999999999999999999988888889999999999999999999999998888642 222 22
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------------- 140 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------- 140 (732)
+.++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 555566889999999999999999999999999999999999999888877766543
Q ss_pred ---------------CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 004753 141 ---------------NP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL--NNLGVVYTVQGKMDAAA 199 (732)
Q Consensus 141 ---------------~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~ 199 (732)
.| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.++++
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 22 3566777788899999999999999999999999987532 22333334468899999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 200 EMIEKAIAANPTYA--EAYNNLGVLYRDAGSISLAIDAYE--QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 200 ~~l~~al~~~p~~~--~~~~~La~~~~~~g~~~eA~~~~~--~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
+.++++++..|+++ .....+|.++.+.|++++|.++|+ ++++..|++.... .++..+...|+.+++.+.+++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~---~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA---MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999 888999999999999999999999 6888889876532 4677888889988876665543
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=9.7e-16 Score=156.23 Aligned_cols=229 Identities=18% Similarity=0.211 Sum_probs=204.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHH
Q 004753 17 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 96 (732)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A 96 (732)
++.+|.++-..++..+..++.++.+.|++.+..|++++|.+.|++++..+....+ +++++|..+..+|++++|
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-------alfniglt~e~~~~ldea 543 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-------ALFNIGLTAEALGNLDEA 543 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-------HHHHhcccHHHhcCHHHH
Confidence 5666666666667777777888888888888999999999999999987765544 455667777778899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 97 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 176 (732)
Q Consensus 97 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 176 (732)
+++|-+.-.+--++.++++.++.+|..+.+..+|++++-++..+-|+++.++..||.+|-+.|+..+|.+++-......|
T Consensus 544 ld~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp 623 (840)
T KOG2003|consen 544 LDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP 623 (840)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 177 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 177 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
.+.+....||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-+..|.+.+....
T Consensus 624 ~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 624 CNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 9999999999999999999999999999999999999989999999999999999999999999999998877543
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=5.7e-15 Score=161.32 Aligned_cols=258 Identities=13% Similarity=0.032 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM-GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
..+..|...+..|+|++|.+...+.-+..+. +..++.+ +.+....|++++|..+++++.+..|+..... ...
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~------~l~ 158 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV------EIT 158 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH------HHH
Confidence 4567788888899999999888876665433 4444444 6666999999999999999999998875322 112
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------------- 140 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------- 140 (732)
.+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.+..+.
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3566677889999999999999999999999999999999999999999666655532
Q ss_pred --------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 141 --------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 200 (732)
Q Consensus 141 --------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 200 (732)
.|+++.+...++..+...|+.++|.+.++++++ .+.++.....++.+ ..++.+++++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~ 315 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEK 315 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHH
Confidence 233556677788999999999999999999999 45556555444443 4599999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHH
Q 004753 201 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 201 ~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
.+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++... ..++..+...|+.+++.+.+++
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~---~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY---AWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987552 3577888889998888766654
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1e-15 Score=156.04 Aligned_cols=264 Identities=20% Similarity=0.223 Sum_probs=231.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
.+.+..++.+|+++.|+++++-.-+.+... ..+-.+|..+++.+ .++..|..+...++.++.-++. ++.+
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~-------a~~n 495 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA-------ALTN 495 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH-------Hhhc
Confidence 466778899999999999987765555443 33455666666654 3789999999999998876653 4556
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
.|++.+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 77888889999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
+|++++.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+..-.||..|....-.++|+.+|+++--+
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHHH
Q 004753 243 DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 278 (732)
Q Consensus 243 ~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 278 (732)
.|+.. .+.++.+.++-..|.+.++++.++..-+.
T Consensus 656 qp~~~--kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 656 QPNQS--KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CccHH--HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99743 34566777888899999999887765443
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=7.7e-16 Score=151.52 Aligned_cols=250 Identities=16% Similarity=0.122 Sum_probs=213.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 11 VYSELMQYDTALGCYEKAALER---PM-------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
+++..++...|-......++.+ |. +..-...+|.||+++|-+.+|.+.++.+++..|. ++.+..
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfll----- 261 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLL----- 261 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHH-----
Confidence 4455667777776666555432 11 2334457899999999999999999999998875 334444
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 160 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (732)
+.+.|....+...|+..+.+.++..|.+...+..++.++..++++++|.++|+.+++.+|.+.++...+|.-|+..++
T Consensus 262 --LskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~ 339 (478)
T KOG1129|consen 262 --LSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN 339 (478)
T ss_pred --HHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC
Confidence 455555567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--T-YAEAYNNLGVLYRDAGSISLAIDAYE 237 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~-~~~~~~~La~~~~~~g~~~eA~~~~~ 237 (732)
.+-|+.+|++.+++.-.+++.++|+|.|++..++++-++..|++++.... + -+++|+++|.+....|++.-|..+|+
T Consensus 340 PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 340 PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998744 2 36899999999999999999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHhhhccCCcHHHHH
Q 004753 238 QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 270 (732)
Q Consensus 238 ~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~ 270 (732)
-++..++++.++..|+ +..-...|+.+++..
T Consensus 420 laL~~d~~h~ealnNL--avL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNL--AVLAARSGDILGARS 450 (478)
T ss_pred HHhccCcchHHHHHhH--HHHHhhcCchHHHHH
Confidence 9999999999998884 444456777665433
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=167.79 Aligned_cols=231 Identities=18% Similarity=0.229 Sum_probs=190.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++|..||.+...+++-..|+..++++++++|++.+++..||..|...|.-.+|++++.+-+...|........--.-..
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~ 398 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF 398 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999988765311100000000
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 159 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 159 (732)
...........+..-.++|..+....| .+++++..||.+|...|+|++|+.+|+.||...|++...|+.||-.+....
T Consensus 399 ~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 399 ENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN 478 (579)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc
Confidence 000001111234455677777777788 789999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCH
Q 004753 160 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSI 229 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----------~~~~~~La~~~~~~g~~ 229 (732)
+.++|+..|++|+++.|.+..+.++||..|..+|.|++|.++|-.+|.+.+.. ..+|..|-.++..+++.
T Consensus 479 ~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 479 RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999986541 23555555555555555
Q ss_pred HHH
Q 004753 230 SLA 232 (732)
Q Consensus 230 ~eA 232 (732)
+-+
T Consensus 559 D~l 561 (579)
T KOG1125|consen 559 DLL 561 (579)
T ss_pred hHH
Confidence 533
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=9.4e-15 Score=155.50 Aligned_cols=258 Identities=15% Similarity=0.080 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
.|...+..+...|+...|..++.++++.+|++.+.|+..-.+.....++++|..+|.++....|.. .+++.-
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe--------Rv~mKs 657 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE--------RVWMKS 657 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc--------hhhHHH
Confidence 345556666777788888888888888888877777777777777778888888888877766652 234444
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 163 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 163 (732)
......+++.++|+.+++.+++..|.....|..+|+++.++++.+.|.+.|...++..|++...|..++.+-.+.|+.-+
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 45555677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------H
Q 004753 164 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------------------------------A 213 (732)
Q Consensus 164 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------------------------------~ 213 (732)
|...++++.-.+|++...|......-.+.|+.+.|...+.+|++..|++ +
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp 817 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP 817 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999877653 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHH
Q 004753 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 271 (732)
Q Consensus 214 ~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~ 271 (732)
.++...|.++....++++|.++|.++++++|++.+++..+ -..++..|..++-.+.
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed~kev 873 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEEDQKEV 873 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHHHHHH
Confidence 4567789999999999999999999999999999998763 3345556655443333
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.1e-16 Score=157.60 Aligned_cols=244 Identities=20% Similarity=0.231 Sum_probs=200.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
++-....|..++.+.+|.+|+..|..+++..|+++..|.+.+.+++..+++++|.-..++.+++.+.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 34556788899999999999999999999999999999999999999999999999999999998876544333333322
Q ss_pred Hh---------------------------------------------hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004753 82 DL---------------------------------------------GTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 116 (732)
Q Consensus 82 ~l---------------------------------------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 116 (732)
.+ +.++...+++++|...--..+++++.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 22 234455677888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HH
Q 004753 117 LGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQ 180 (732)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 180 (732)
.|.+++...+.+.|+..|++++.++|+.. ..+..-|+-.++.|++.+|.++|..+|.++|++ +.
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 88888888888888888888888888753 344556777888888888888888888888876 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
.|.+.+.+..++|+..+|+.-.+.++++++....++...|.|+..++++++|.+.|+++++...+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 67888888888888888888888888888888888888888888888888888888888887665
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.6e-15 Score=150.32 Aligned_cols=160 Identities=19% Similarity=0.285 Sum_probs=92.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH------
Q 004753 89 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD------ 162 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~------ 162 (732)
..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.|..+.|.....|..|..+|...|++.
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555554444
Q ss_pred ------------------------------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 163 ------------------------------KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 163 ------------------------------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
+|.+.++++++++|....+-..++.++...|+++.++..+++.+...|+
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D- 470 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD- 470 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-
Confidence 4555555555556666666666666666666666666666666665554
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 213 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 213 ~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
...+..||.++...+.+++|+++|..++.++|++..+
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 3455566666666666666666666666666665444
No 58
>PLN02949 transferase, transferring glycosyl groups
Probab=99.69 E-value=3e-15 Score=165.30 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=144.5
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhH----cCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCA----VPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILL 540 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~----~p~~~l~l~~~~~~--~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~ 540 (732)
+..+|.+++|+ .|.++.++++|++++++ .|+.+|+|+|++.. +....+.+++.++++|+ .++|.|+|.++
T Consensus 267 ~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L-~~~V~f~g~v~- 344 (463)
T PLN02949 267 DPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGL-DGDVEFHKNVS- 344 (463)
T ss_pred CCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCC-CCcEEEeCCCC-
Confidence 34567788876 89999999999998764 47899999987632 23455788999999999 58999999987
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhh--cCCCccccCCHHHHHHHHHHhh
Q 004753 541 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK--VGLKHLIAKNEDEYVQLALQLA 617 (732)
Q Consensus 541 ~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~--~gl~~~ia~~~~~y~~~a~~l~ 617 (732)
.++...+|+.+|+++-|+-+ +.|.+.+|||++|+|||+........ .+... -|..++++.|.+++.+...++.
T Consensus 345 ~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~----eIV~~~~~g~tG~l~~~~~~la~ai~~ll 420 (463)
T PLN02949 345 YRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM----DIVLDEDGQQTGFLATTVEEYADAILEVL 420 (463)
T ss_pred HHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc----eeeecCCCCcccccCCCHHHHHHHHHHHH
Confidence 68888999999999988866 66999999999999999854221100 11111 1556778889999999999999
Q ss_pred c-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 618 S-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 618 ~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
+ +++.+.++++..+++.. .|+.+.|+++++++|+.+..
T Consensus 421 ~~~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 421 RMRETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred hCCHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHh
Confidence 8 67888899999988752 39999999999999998764
No 59
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.3e-14 Score=152.67 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=90.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 151 LGVIYKDRDNLDKAVECYQMALSIK--------------------------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 204 (732)
Q Consensus 151 la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 204 (732)
+|..+...++++.|+.+|++++... |.-..-....|..++..|+|.+|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4556777788888888888887643 22233345568889999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhh
Q 004753 205 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 260 (732)
Q Consensus 205 al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~ 260 (732)
+++.+|+++..|.+.|.||.++|++..|+...+++++++|++..++.+...++..+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988887765554443
No 60
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.68 E-value=4.9e-15 Score=161.42 Aligned_cols=327 Identities=16% Similarity=0.146 Sum_probs=205.5
Q ss_pred cccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC--C----HHHHHHHH
Q 004753 300 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMV 373 (732)
Q Consensus 300 rIGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i 373 (732)
+|-++...+....+..++..+....+..++++++.+.... +....++.. .+..+..+... . -..+.+.|
T Consensus 3 ~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~-~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~l~~~l 77 (374)
T TIGR03088 3 LIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEV-SAFRKRIQR----PDVAFYALHKQPGKDVAVYPQLYRLL 77 (374)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCC-ChhHHHHHh----cCceEEEeCCCCCCChHHHHHHHHHH
Confidence 4555666666566666677777777777788766664332 223333322 12234444221 1 24577889
Q ss_pred HhCCCcEEEeCCCCCCCCc--hhhhccCCC--CeEE-ecccCCCCC--C------------CCCccEEEecCCCCCcCcc
Q 004753 374 REDKIDILVELTGHTANNK--LGMMACQPA--PVQV-TWIGYPNTT--G------------LPTIDYRITDSLADPPETK 434 (732)
Q Consensus 374 ~~d~~Dilvdl~g~t~~~~--~~~~a~r~A--pvq~-~~~g~p~t~--g------------~~~~Dy~~~d~~~~p~~~~ 434 (732)
++.++||+ |+.+.. ...++.+.. |+-+ +..|+...+ + .+.+|.+++-. ....
T Consensus 78 ~~~~~Div-----h~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs----~~~~ 148 (374)
T TIGR03088 78 RQLRPDIV-----HTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVS----RDLE 148 (374)
T ss_pred HHhCCCEE-----EEcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeC----HHHH
Confidence 99999999 443211 111122222 3322 222221100 0 01244444311 1111
Q ss_pred c----C---CccceEEcCCCcc--ccCCCCCCC-CCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcC----
Q 004753 435 Q----K---HVEELIRLPECFL--CYTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP---- 498 (732)
Q Consensus 435 ~----~---~~E~l~~lp~~~~--~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p---- 498 (732)
. . ..+++..+|+..- .|.|..... ...+....+++.+++++++|+ .|..+.+++++.+++.+.|
T Consensus 149 ~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~ 228 (374)
T TIGR03088 149 DWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAE 228 (374)
T ss_pred HHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCccccc
Confidence 1 1 1345666776321 111211100 001111235677889999988 7899999999999998877
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCee
Q 004753 499 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCV 577 (732)
Q Consensus 499 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvv 577 (732)
+.+|+++|.| +.++.+.+.+++.|+ .++|.|.|. ..+....|..+|+++-|+.+ +.|.+++|||+||+|||
T Consensus 229 ~~~l~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDG----PARGACEQMVRAAGL-AHLVWLPGE---RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVI 300 (374)
T ss_pred ceEEEEecCC----chHHHHHHHHHHcCC-cceEEEcCC---cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEE
Confidence 6799999977 556788888999999 588999986 35678888889999999877 55899999999999999
Q ss_pred ecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 578 TMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 578 t~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
+..-... .-+..-|..+++. .|.+++++....+..|++.+..+++..++.... .|+++.+++++++.|++
T Consensus 301 ~s~~~g~------~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 301 ATAVGGN------PELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQ--QFSINAMVAAYAGLYDQ 372 (374)
T ss_pred EcCCCCc------HHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Confidence 8432211 1111124444443 689999999999999999999999888887643 59999999999999987
Q ss_pred H
Q 004753 656 M 656 (732)
Q Consensus 656 ~ 656 (732)
+
T Consensus 373 ~ 373 (374)
T TIGR03088 373 L 373 (374)
T ss_pred h
Confidence 5
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=3.7e-14 Score=155.68 Aligned_cols=237 Identities=12% Similarity=-0.027 Sum_probs=171.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
+...|.++..+|++++|.++++++.+..|+.. .+....+.++...|++++|+..+++.++..|+++.+...++.++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34455666666666666666666666665543 34444566666666666666666666666666665555544444433
Q ss_pred hhhH-------------------------------hhcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHH
Q 004753 84 GTKV-------------------------------KLEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFD 128 (732)
Q Consensus 84 g~~~-------------------------------~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~ 128 (732)
+..- ...+..+++.+.+.++.+..| +++..+..++..+...|+++
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 3110 111122223335555555566 57889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH-
Q 004753 129 MAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLDKAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE- 203 (732)
Q Consensus 129 ~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~l~- 203 (732)
+|.+.++++++..|++.... ..........++.+++++.++++++..|+++ ..+..+|.++.+.|++++|.++|+
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999999999887532 2233334456889999999999999999999 889999999999999999999999
Q ss_pred -HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 204 -KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 204 -~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
++++..|+... +..+|.++.+.|+.++|.++|++++..
T Consensus 361 a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 361 VAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57778887655 669999999999999999999998754
No 62
>PLN02789 farnesyltranstransferase
Probab=99.66 E-value=1.7e-14 Score=150.77 Aligned_cols=211 Identities=14% Similarity=0.104 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 115 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 115 (732)
.+++..+-.++...+++++|+..+.++++++|++..++...+.++..++ .++++++.+++++++.+|++..+|.
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~------~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD------ADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc------hhHHHHHHHHHHHHHHCCcchHHhH
Confidence 3455455555667788999999999999999999988888777776653 2689999999999999999999999
Q ss_pred HHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-
Q 004753 116 NLGVAYGEMLKF--DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ- 192 (732)
Q Consensus 116 ~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 192 (732)
..+.++...++. ++++.+++++++.+|++..+|...+.++...|++++|++++.++++.+|.+..+|+..+.++...
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 999999999874 78899999999999999999999999999999999999999999999999999999999998776
Q ss_pred --CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 193 --GKM----DAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 193 --g~~----~eA~~~l~~al~~~p~~~~~~~~La~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
|.+ ++++++..+++..+|++..+|..++.++.. +++..+|++.+.+++...|++..+..-
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~ 260 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSD 260 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHH
Confidence 333 578999999999999999999999999988 456788999999999988887766543
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=7.4e-14 Score=152.56 Aligned_cols=231 Identities=12% Similarity=-0.001 Sum_probs=175.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhH
Q 004753 9 GVVYSELMQYDTALGCYEKAALERPMYAEA-YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 87 (732)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 87 (732)
+......|++++|..+|+++.+.+|++..+ ....+.++...|++++|+..+++..+..|+++.+...++.+|...+..-
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 444477777777777777777777765433 2334677777777777777777777777777766666666655544322
Q ss_pred h-----------------------------------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 88 K-----------------------------------LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 132 (732)
Q Consensus 88 ~-----------------------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (732)
. ...+.+...+.+++.-+..|+++.+...++..+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 11112222223333333456788999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 133 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
.++++++..+ +......++.+ ..++.+++++.+++.++..|+++..+..+|.++...+++++|.++|+++++..|++
T Consensus 285 ~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 285 IILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 9999999544 55554444444 45999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 213 AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 213 ~~~~~~La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
. .+..++.++.++|+.++|.++|++++.+.
T Consensus 362 ~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 Y-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4 46689999999999999999999998764
No 64
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1.6e-13 Score=151.91 Aligned_cols=265 Identities=17% Similarity=0.199 Sum_probs=201.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+|+.+|.+|.++|+.+++...+-.|-.++|++...|..++....++|++++|.-+|.+|++.+|.+.......+..
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L-- 250 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL-- 250 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH--
Confidence 468999999999999999999999999999999999999999999999999999999999999999987655554444
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCH-----HH------------------------------------HHHHHHH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYA-----DA------------------------------------MYNLGVA 120 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~------------------------------------~~~la~~ 120 (732)
|.+.|+...|...|.+++...|... +. +..++.+
T Consensus 251 -----~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 251 -----YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL 325 (895)
T ss_pred -----HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 4445688888888888888887210 11 2233444
Q ss_pred HHHcCCHHHHHHHHHHHHh----------------------c--------------------------------------
Q 004753 121 YGEMLKFDMAIVFYELAFH----------------------F-------------------------------------- 140 (732)
Q Consensus 121 ~~~~g~~~~A~~~~~~al~----------------------~-------------------------------------- 140 (732)
+.....++.|......-.. +
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH
Confidence 4444444444444332222 0
Q ss_pred -C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 141 -N---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 215 (732)
Q Consensus 141 -~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 215 (732)
+ .+....++.++.++...|++.+|+.++..+....+. +...|..+|.||..+|.+++|+++|++++...|++.++
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 0 012456778899999999999999999999877553 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh-------HHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 216 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN-------AGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 216 ~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~-------a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
...|+.++.++|+.++|.+.+++...-++.+.. .......+..+...|+.++.+....
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999987733322211 1112223444556666665444333
No 65
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.65 E-value=6.5e-15 Score=164.86 Aligned_cols=346 Identities=12% Similarity=0.079 Sum_probs=205.6
Q ss_pred CCCccccccCC-Cc--ccChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHH-HHhh-hCCeEEEc---cCCCHH
Q 004753 296 ERPLVIGYVSP-DY--FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE-KVMK-KGGIWRDI---YGIDEK 367 (732)
Q Consensus 296 ~~~lrIGyvS~-d~--~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~-~~~~-~~~~~~~~---~~~~~~ 367 (732)
.++.||..+.. .+ ....+...+..+...+.+.+.||++.+...........++- .+.. ....+..+ .... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~ 134 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALS-P 134 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCC-H
Confidence 56678876642 21 22334445556666677778899888764432110000000 0000 00000000 0111 3
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCchhhh--ccCCCCeEEecccCCCCC----CC---------------CCccEEEecC
Q 004753 368 KVAAMVREDKIDILVELTGHTANNKLGMM--ACQPAPVQVTWIGYPNTT----GL---------------PTIDYRITDS 426 (732)
Q Consensus 368 ~~~~~i~~d~~Dilvdl~g~t~~~~~~~~--a~r~Apvq~~~~g~p~t~----g~---------------~~~Dy~~~d~ 426 (732)
.+.+.|+..++||++--+.+.. .-..++ ...-.|+.+++.++.... +. ...|.+++..
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~-~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S 213 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIM-VFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTS 213 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchh-HHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECC
Confidence 6788899999999864322111 111111 123358888877653211 00 1235555422
Q ss_pred CCCCcCcccCC---ccceEEcCCCcc--ccCCCCCCCCCC-CCCCCCCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCc
Q 004753 427 LADPPETKQKH---VEELIRLPECFL--CYTPSPEAGPVC-PTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNS 500 (732)
Q Consensus 427 ~~~p~~~~~~~---~E~l~~lp~~~~--~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~ 500 (732)
-..-......+ .+++..+|+..- .|.|........ .....+.+.++++.++++.+ ..-++.+.+++++.|+.
T Consensus 214 ~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~--~K~~~~li~a~~~~~~~ 291 (465)
T PLN02871 214 PALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGA--EKNLDFLKRVMERLPGA 291 (465)
T ss_pred HHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCch--hhhHHHHHHHHHhCCCc
Confidence 10000011222 456777776321 122221111000 01112235567888898833 23355566677788999
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeec
Q 004753 501 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 579 (732)
Q Consensus 501 ~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~ 579 (732)
+|+++|+| +.++.+++.++. .+|.|+|.++ .++....|..+||++-|+.+ +.|.+++|||++|+|||+.
T Consensus 292 ~l~ivG~G----~~~~~l~~~~~~-----~~V~f~G~v~-~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s 361 (465)
T PLN02871 292 RLAFVGDG----PYREELEKMFAG-----TPTVFTGMLQ-GDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAA 361 (465)
T ss_pred EEEEEeCC----hHHHHHHHHhcc-----CCeEEeccCC-HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEc
Confidence 99999987 566677665542 4699999987 68899999999999999987 5588999999999999984
Q ss_pred CCCcccccchhHHhhh--cCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH-HHH
Q 004753 580 AGSVHAHNVGVSLLTK--VGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES-TYR 654 (732)
Q Consensus 580 ~g~~~~~r~~~s~l~~--~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~-~~~ 654 (732)
..... ..++.. .|-.+++. .|.+++++...+|.+|++.+.++++..+.... .|+++..++++++ .|+
T Consensus 362 ~~gg~-----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~a~~l~~~~Y~ 433 (465)
T PLN02871 362 RAGGI-----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAATRKLRNEQYS 433 (465)
T ss_pred CCCCc-----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH
Confidence 32211 112222 25556664 58999999999999999999999999988753 3899999999998 799
Q ss_pred HHHHHHhcC
Q 004753 655 NMWHRYCKG 663 (732)
Q Consensus 655 ~~~~~~~~~ 663 (732)
+++.+|.+-
T Consensus 434 ~~~~~~~~~ 442 (465)
T PLN02871 434 AAIWFWRKK 442 (465)
T ss_pred HHHHHHHHH
Confidence 999887653
No 66
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.65 E-value=3.9e-15 Score=163.19 Aligned_cols=175 Identities=15% Similarity=0.086 Sum_probs=145.1
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
.+.+++++++++ .|..+.+++++..+.++.|+.+|+++|+| +.++.+++.++++|+ .++|.|.|+++ +++..
T Consensus 220 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G----~~~~~l~~~~~~~~l-~~~V~~~G~~~-~~el~ 293 (406)
T PRK15427 220 ATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIG----PWERRLRTLIEQYQL-EDVVEMPGFKP-SHEVK 293 (406)
T ss_pred CCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECc----hhHHHHHHHHHHcCC-CCeEEEeCCCC-HHHHH
Confidence 345678888888 79999999999999888999999999987 678899999999999 58999999987 68899
Q ss_pred HhcccccEEecCCC-------CCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHh
Q 004753 546 QAYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQL 616 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l 616 (732)
..|+.+|+++-|+. .+.+++++|||++|+|||+....... -+..-|..++++ .|.+++++...+|
T Consensus 294 ~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~------E~v~~~~~G~lv~~~d~~~la~ai~~l 367 (406)
T PRK15427 294 AMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIP------ELVEADKSGWLVPENDAQALAQRLAAF 367 (406)
T ss_pred HHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCch------hhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 99999999999885 34578999999999999984322111 111224455554 5899999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 617 AS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 617 ~~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
.+ |++.+.++++..|+..... |+.+..++++++.|+++
T Consensus 368 ~~~d~~~~~~~~~~ar~~v~~~--f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 368 SQLDTDELAPVVKRAREKVETD--FNQQVINRELASLLQAL 406 (406)
T ss_pred HhCCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhC
Confidence 99 9999999999999887644 99999999999999763
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.65 E-value=2.5e-14 Score=155.80 Aligned_cols=243 Identities=24% Similarity=0.279 Sum_probs=196.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh----
Q 004753 32 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY---- 106 (732)
Q Consensus 32 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 106 (732)
.|....+..+++..|..+|+|++|+..++++++.-.+ ....+..++..+..+|..|..++++++|+..|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666677888999999999999999999999987211 11122334555557888999999999999999999986
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 107 ----NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 107 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
+|..+.++.+||.+|...|++++|..++++|+++. |.-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 33445689999999999999999999999999873 333667889999999999999999999999987
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 175 K--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--------PTYAEAYNNLGVLYRDAGSISLAIDAYEQ 238 (732)
Q Consensus 175 ~--------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--------p~~~~~~~~La~~~~~~g~~~eA~~~~~~ 238 (732)
. +..+..+.++|.+|..+|++++|.+++++++.+. +.....+.++|..|.+.+++.+|.+.|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 2345689999999999999999999999999874 22356788999999999999999999999
Q ss_pred HHhh----CCCChhHH-HHHHHHHhhhccCCcHHHHHHHHH
Q 004753 239 CLKI----DPDSRNAG-QNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 239 al~l----~p~~~~a~-~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
+..+ .|+++... ...-++..|-..|+++++.+....
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8766 45554332 234578889999999888776544
No 68
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.63 E-value=5.4e-14 Score=153.05 Aligned_cols=336 Identities=10% Similarity=0.007 Sum_probs=209.8
Q ss_pred cccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhh--HHHHHHHhhhCCeEEEccCCCHHH---H----H
Q 004753 300 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT--IRFREKVMKKGGIWRDIYGIDEKK---V----A 370 (732)
Q Consensus 300 rIGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~----~ 370 (732)
||.++++.+....+...+..+....++.+.++..|......+... .++.... . +... .++... . .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~-g~~~----~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL-Q-GADI----ELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh-c-CCCC----CCCHHHHHHHHHHHH
Confidence 366677777778888888888888888889998887654332211 1111111 0 1111 222211 1 1
Q ss_pred HH----HHhCCCcEEEeCCCCCCCCchhhhccC-CCCeEEecccCCCCC----------CCCCccEEEecCCCCCcCccc
Q 004753 371 AM----VREDKIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTT----------GLPTIDYRITDSLADPPETKQ 435 (732)
Q Consensus 371 ~~----i~~d~~Dilvdl~g~t~~~~~~~~a~r-~Apvq~~~~g~p~t~----------g~~~~Dy~~~d~~~~p~~~~~ 435 (732)
.. +...++||++--+.+. .-+..+..+ ..|+.+++++...+. .+...|.+++.. +.....
T Consensus 75 ~~~~~~~~~~~~Dvv~~h~~~~--~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~~ 149 (372)
T cd03792 75 ENAERPLLDLDADVVVIHDPQP--LALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVPP 149 (372)
T ss_pred HHhccccccCCCCEEEECCCCc--hhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcCC
Confidence 11 2256899996432221 112222222 457666665433211 012245555321 111222
Q ss_pred CCccceEEcCCCccccCCC--CCCC----CCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecC
Q 004753 436 KHVEELIRLPECFLCYTPS--PEAG----PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCK 507 (732)
Q Consensus 436 ~~~E~l~~lp~~~~~~~~~--~~~~----~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~ 507 (732)
.+..+.+.+|+..=...+. ...+ ..+...+++.+.++++.++|+ .|..+.+++++..+.+..|+.+|+++|.
T Consensus 150 ~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~ 229 (372)
T cd03792 150 QVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGS 229 (372)
T ss_pred CCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeC
Confidence 3333333677532111100 0000 011123456677889999998 8999999999999998889999999997
Q ss_pred CCCCHHHHHH-HHHHHHHcCCCCCcEEEcCCcC-CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcc
Q 004753 508 PFCCDSVRHR-FLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH 584 (732)
Q Consensus 508 ~~~~~~~~~~-~~~~~~~~Gv~~~rv~~~~~~~-~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~ 584 (732)
|...++.... +.+..+..|+ .++|.|.+..+ +.++...+|+.+|+|+-|+.+ +.|.+++|||++|+|||+......
T Consensus 230 g~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~ 308 (372)
T cd03792 230 GATDDPEGWIVYEEVLEYAEG-DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGI 308 (372)
T ss_pred CCCCCchhHHHHHHHHHHhCC-CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCc
Confidence 7432222223 3333445677 47899998763 357788899999999999988 559999999999999998543322
Q ss_pred cccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 585 AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 585 ~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
.. ...-|..++++.+.++......++.+|++.++.+++..++.... .|+++..++++.+.|+.
T Consensus 309 ~~------~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 309 PL------QIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRE--NFLITRHLKDYLYLISK 371 (372)
T ss_pred hh------hcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHh
Confidence 21 22236667788888988888888999999999999998887543 48999999999999975
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.63 E-value=4.2e-14 Score=155.31 Aligned_cols=270 Identities=16% Similarity=0.117 Sum_probs=181.9
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCchhhhcc--CCCCeEEecccCCC---CC----------CCCCccEEEecCC--CC
Q 004753 367 KKVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIGYPN---TT----------GLPTIDYRITDSL--AD 429 (732)
Q Consensus 367 ~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~--r~Apvq~~~~g~p~---t~----------g~~~~Dy~~~d~~--~~ 429 (732)
..+.+.+...++||+.--+.+....-...++. +..|+..+..+..+ .. .....|.+++-.- .+
T Consensus 78 ~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 157 (398)
T cd03796 78 PLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKE 157 (398)
T ss_pred HHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhh
Confidence 35667777889999954333222111122222 33577777655311 11 0234566654221 10
Q ss_pred CcC-cccCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEE
Q 004753 430 PPE-TKQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVV 504 (732)
Q Consensus 430 p~~-~~~~~~E~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l 504 (732)
..- ......+++..+|+..= .|.|... . .+++.+++++++++ .|....+++++..+.+..|+.+|++
T Consensus 158 ~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~-------~-~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i 229 (398)
T cd03796 158 NTVLRASLDPERVSVIPNAVDSSDFTPDPS-------K-RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII 229 (398)
T ss_pred HHHHHhCCChhhEEEEcCccCHHHcCCCcc-------c-CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE
Confidence 000 01122456778886421 0222111 0 23566789999987 8889999999999988999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCc
Q 004753 505 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 583 (732)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~ 583 (732)
+|.+ +..+.+++.+++.|++ ++|.|.|.++ .++....|..+|+++-|+.+ +.|.+++|||+||+|||+.....
T Consensus 230 ~G~g----~~~~~l~~~~~~~~l~-~~v~~~G~~~-~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg 303 (398)
T cd03796 230 GGDG----PKRILLEEMREKYNLQ-DRVELLGAVP-HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG 303 (398)
T ss_pred EeCC----chHHHHHHHHHHhCCC-CeEEEeCCCC-HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC
Confidence 9987 5677888999999994 8999999987 68899999999999999877 55889999999999999854332
Q ss_pred ccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 584 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 584 ~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
...-+ .. |-.-++..|.+++++...++..++.....+++..+++... .|+++.+++++.+.|+++..
T Consensus 304 ~~e~i-----~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 304 IPEVL-----PP-DMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKK--MYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred chhhe-----eC-CceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHhc
Confidence 22211 11 2122345688999999999998876665666777766543 49999999999999998763
No 70
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=4.2e-13 Score=156.20 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
++..|..+.+.+++|+++.|+..|+++++.+|.++.+...+..++...|+.++|+.++++++ .|.+..... +.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~-----ll 106 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRG-----LA 106 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHH-----HH
Confidence 45678999999999999999999999999999996555588899999999999999999999 444332222 22
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.++.++..+|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++.+.+|.+... ..++.++...++.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~ 185 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchH
Confidence 345566667899999999999999999999999999999999999999999999999999986554 6667777778888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 196 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 196 (732)
.+|++.++++++.+|++..++..+..++...|-..
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 78999999999999999888777766666555443
No 71
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=5.1e-13 Score=155.48 Aligned_cols=255 Identities=11% Similarity=0.052 Sum_probs=183.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhh
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 86 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 86 (732)
.+|..+..+|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++.+.+|..... ++.++.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~---l~layL----- 178 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY---MTLSYL----- 178 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH---HHHHHH-----
Confidence 347788899999999999999999999999999888888888888888888888888887774322 121211
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCCHHH-----------------------------------------------------
Q 004753 87 VKLEGDINQGVAYYKKALYYNWHYADA----------------------------------------------------- 113 (732)
Q Consensus 87 ~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------------------------- 113 (732)
+...++..+|++.++++++.+|++.++
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 111334444555555555554444332
Q ss_pred -----------------------------------------------------------------------HHHHHHHHH
Q 004753 114 -----------------------------------------------------------------------MYNLGVAYG 122 (732)
Q Consensus 114 -----------------------------------------------------------------------~~~la~~~~ 122 (732)
....|..|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 233455555
Q ss_pred HcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CCHHH
Q 004753 123 EMLKFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQS 181 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~ 181 (732)
..++.++|+.+|++++...+ ........|...+...+++++|..++++..+..| +..++
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 56666666666666655432 1223345667777788888888888888777433 33457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhc
Q 004753 182 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 261 (732)
Q Consensus 182 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~ 261 (732)
...++.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|.+.++.++.++|++..+... .+..++.
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~--~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA--QAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH--HHHHHHh
Confidence 77788889999999999999999999999999999999999999999999999999999999998877665 4555555
Q ss_pred cCCcHHHHHH
Q 004753 262 EGHDDKLFEA 271 (732)
Q Consensus 262 ~~~~~~a~~~ 271 (732)
.++..++-..
T Consensus 497 l~e~~~A~~~ 506 (822)
T PRK14574 497 LQEWHQMELL 506 (822)
T ss_pred hhhHHHHHHH
Confidence 5666555333
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.6e-13 Score=139.19 Aligned_cols=262 Identities=18% Similarity=0.107 Sum_probs=214.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhh
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 86 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 86 (732)
..|.++....-+.-+..++-+-...-|++...+..+|.+++..|++++|+..|+++.-++|........++..+
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL------ 276 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLL------ 276 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHH------
Confidence 34555555555666666677777788999999999999999999999999999999999998876655544443
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 87 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 166 (732)
Q Consensus 87 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (732)
...|++++-.......+........-|+--+..++..+++..|+.+-+++|..+|.+..++...|.++...|+.++|+-
T Consensus 277 -~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 277 -GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred -HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 3467898888888888888878888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhhCC
Q 004753 167 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG-VLYR-DAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 167 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La-~~~~-~~g~~~eA~~~~~~al~l~p 244 (732)
.|+.+..+.|...++|..|-.+|...|++.||....+.++...|.++.++..+| .++. .----++|.+.++++++++|
T Consensus 356 aFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 356 AFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 999999999999999999999999999999998888888888888888777775 4333 33345678888888888888
Q ss_pred CChhHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 245 DSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 245 ~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
++..+.. .++..+..+|...+++...+++..
T Consensus 436 ~Y~~AV~--~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 436 IYTPAVN--LIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred ccHHHHH--HHHHHHHhhCccchHHHHHHHHHh
Confidence 8776653 355566666666666665555544
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2.7e-12 Score=127.08 Aligned_cols=236 Identities=20% Similarity=0.191 Sum_probs=204.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
++...+|..+...|..+.|+.+-+..++ .|+ ...+...||.-|+..|-++.|.+.|....+...--.
T Consensus 70 e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~------- 141 (389)
T COG2956 70 EAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAE------- 141 (389)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhH-------
Confidence 5788999999999999999999887665 444 245889999999999999999999999876433222
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 152 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (732)
.++..+-.+|....++++|++..++..++.+.. +..|..++..+....+.+.|...+.+|++.+|++..+-..+|
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 345566777888899999999999999988765 356888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 153 VIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 231 (732)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~e 231 (732)
.++...|+|++|++.++.+++.+|+. +.+...|..+|..+|+.++.+..+.++.+.+++ +.+...++..-....-.+.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDA 300 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHH
Confidence 99999999999999999999999987 568888999999999999999999999998876 4556667777777777889
Q ss_pred HHHHHHHHHhhCCCCh
Q 004753 232 AIDAYEQCLKIDPDSR 247 (732)
Q Consensus 232 A~~~~~~al~l~p~~~ 247 (732)
|..++.+-+...|+-.
T Consensus 301 Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 301 AQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHHHHhhCCcHH
Confidence 9999999999999743
No 74
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.59 E-value=9.2e-14 Score=150.09 Aligned_cols=334 Identities=16% Similarity=0.077 Sum_probs=207.4
Q ss_pred cccccCCCcc-cChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEc-cCCCHHHHHHHHHhCC
Q 004753 300 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI-YGIDEKKVAAMVREDK 377 (732)
Q Consensus 300 rIGyvS~d~~-~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~d~ 377 (732)
+|+|+++... ...+..+...+.........++.+++.......... .... ........ .......+.+.++..+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY-GGEQ---EVVRVIVLDNPLDYRRAARAIRLSG 76 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC-CCcc---cceeeeecCCchhHHHHHHHHhhcC
Confidence 3666766544 345666677777777777777777665432211110 0000 00111111 1223456788899999
Q ss_pred CcEEEeCCCCC--CCCchhhhc----cCCCCeEEecccC-CCCCC----------CCCccEEEecCCCCCcCc----ccC
Q 004753 378 IDILVELTGHT--ANNKLGMMA----CQPAPVQVTWIGY-PNTTG----------LPTIDYRITDSLADPPET----KQK 436 (732)
Q Consensus 378 ~Dilvdl~g~t--~~~~~~~~a----~r~Apvq~~~~g~-p~t~g----------~~~~Dy~~~d~~~~p~~~----~~~ 436 (732)
+||++-...+. .......+. .+..|+.+...++ +.... +...|.+++.. -... ...
T Consensus 77 ~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s---~~~~~~~~~~~ 153 (366)
T cd03822 77 PDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMS---SELLRALLLRA 153 (366)
T ss_pred CCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEee---HHHHHHHHhhc
Confidence 99998543221 111111111 1456888887776 22111 12246666542 0111 122
Q ss_pred CccceEEcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 004753 437 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 514 (732)
Q Consensus 437 ~~E~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~ 514 (732)
+.+++..+|+..-...+. . .........+.+.+++++++++ .|....+++++.++.++.|+.+|+++|.+......
T Consensus 154 ~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~ 231 (366)
T cd03822 154 YPEKIAVIPHGVPDPPAE-P-PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLER 231 (366)
T ss_pred CCCcEEEeCCCCcCcccC-C-chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhh
Confidence 357888888743211111 0 0000111234456678888876 78889999999999999999999999876321111
Q ss_pred H-HHHHHHHHHcCCCCCcEEEcCC-cCCcHHHHHhcccccEEecCCCCC--C-cccHHHhhhcCCCeeecCCCcccccch
Q 004753 515 R-HRFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFPYA--G-TTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 515 ~-~~~~~~~~~~Gv~~~rv~~~~~-~~~~~~~~~~~~~~Di~Ld~~~~~--g-~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
. ....+.+++.|+ .++|.|.|. ++ .++....|..+|+++-|+.+. | +.+++|||++|+|||+..... ...
T Consensus 232 ~~~~~~~~i~~~~~-~~~v~~~~~~~~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~-- 306 (366)
T cd03822 232 YRGEAYALAERLGL-ADRVIFINRYLP-DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEE-- 306 (366)
T ss_pred hhhhhHhHHHhcCC-CCcEEEecCcCC-HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhe--
Confidence 1 111134778898 589999987 66 688999999999999998776 4 779999999999999854321 111
Q ss_pred hHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 590 VSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 590 ~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
+.. +-.+++. .|.+++++....+.+|++.+.++++..+..... |+++.+++.+.++|+
T Consensus 307 ---i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~ 366 (366)
T cd03822 307 ---VLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARA---MSWERVAERYLRLLA 366 (366)
T ss_pred ---eee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHhC
Confidence 111 3344554 578999999999999999999999988877542 899999999998873
No 75
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.59 E-value=3e-14 Score=153.02 Aligned_cols=339 Identities=16% Similarity=0.114 Sum_probs=215.2
Q ss_pred ccccCCCccc--ChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEE-----ccCCCHHHHHHHH
Q 004753 301 IGYVSPDYFT--HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRD-----IYGIDEKKVAAMV 373 (732)
Q Consensus 301 IGyvS~d~~~--h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i 373 (732)
|.+++..+.. ......+..+.......+++|.+++......................+.. ........+...+
T Consensus 2 I~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (374)
T cd03801 2 ILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLL 81 (374)
T ss_pred eeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHh
Confidence 3344444332 23444455666666667888888776543322111000000000000000 0001124577778
Q ss_pred HhCCCcEEEeCCCCCCCCchhhhccCCCCeEEecccCCCCCC------------------CCCccEEEecCCCCCcCccc
Q 004753 374 REDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------------LPTIDYRITDSLADPPETKQ 435 (732)
Q Consensus 374 ~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g------------------~~~~Dy~~~d~~~~p~~~~~ 435 (732)
...++||++-...+...........+-.|+.+..++...... +...|++++-.-..-.....
T Consensus 82 ~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~ 161 (374)
T cd03801 82 RRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELRE 161 (374)
T ss_pred hhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 899999998776655543332223344587777777443221 22357776532212122233
Q ss_pred CCc---cceEEcCCCccccCCCCCC-CCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 004753 436 KHV---EELIRLPECFLCYTPSPEA-GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPF 509 (732)
Q Consensus 436 ~~~---E~l~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 509 (732)
.+. .++..+|+..- ....... ...........+.++++.+++. .|....++++|..+....|+.+|++.|.+
T Consensus 162 ~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~- 239 (374)
T cd03801 162 LGGVPPEKITVIPNGVD-TERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG- 239 (374)
T ss_pred cCCCCCCcEEEecCccc-ccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc-
Confidence 333 46777776421 1111000 0001223334556778888876 88999999999999999999999999865
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccc
Q 004753 510 CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNV 588 (732)
Q Consensus 510 ~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~ 588 (732)
.....+.+.+.+.+. .++|.|.|.++ .++....+..+|+++.|+.+ +.+++++|||++|+|||+.....+...+
T Consensus 240 ---~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~ 314 (374)
T cd03801 240 ---PLREELEALAAELGL-GDRVTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVV 314 (374)
T ss_pred ---HHHHHHHHHHHHhCC-CcceEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhHHh
Confidence 667777777778888 58999999987 68899999999999999988 5688999999999999997754333322
Q ss_pred hhHHhhhcCCCccccC--CHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 589 GVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 589 ~~s~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
. . +-.+++.. |.+++++...++..|++.+.++++..++...+. |+++.+++.+.+.|+
T Consensus 315 ~-----~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 374 (374)
T cd03801 315 E-----D-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAER--FSWDRVAARTEEVYY 374 (374)
T ss_pred c-----C-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHhhC
Confidence 2 1 33445543 369999999999999999999999888665443 899999999988773
No 76
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.59 E-value=6.4e-14 Score=149.43 Aligned_cols=318 Identities=15% Similarity=0.152 Sum_probs=200.5
Q ss_pred ccccCCCcc-cChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEcc----------CCCHHHH
Q 004753 301 IGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY----------GIDEKKV 369 (732)
Q Consensus 301 IGyvS~d~~-~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 369 (732)
|.++...+. ...+......+.......+++|.+++....... ....... ..+..+. -.....+
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPP-FYELDPK-----IKVIDLGDKRDSKLLARFKKLRRL 75 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCC-ccccCCc-----cceeecccccccchhccccchHHH
Confidence 455555555 444555555566666556788888776544300 0001110 1112221 1223578
Q ss_pred HHHHHhCCCcEEEeCCCCCCCCchhhhccCCCCeEEecccCCCCCC------------CCCccEEEecCCCCCcCcccCC
Q 004753 370 AAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQKH 437 (732)
Q Consensus 370 ~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g------------~~~~Dy~~~d~~~~p~~~~~~~ 437 (732)
.+.|+..++|+++-..++ ....+..+..+..|+-+...+.+.... +...|.+++..-..-......+
T Consensus 76 ~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 154 (348)
T cd03820 76 RKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKKF 154 (348)
T ss_pred HHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhccC
Confidence 888999999999877665 111222222222255555444333221 3456777764311111122334
Q ss_pred ccceEEcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 004753 438 VEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 515 (732)
Q Consensus 438 ~E~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~ 515 (732)
..++..+|+..- .... ... .+.+..+|++++++ .|..+.++++|.++.+..|+.+|+++|.+ ...
T Consensus 155 ~~~~~vi~~~~~-~~~~--~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~ 221 (348)
T cd03820 155 NKNVVVIPNPLP-FPPE--EPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG----PER 221 (348)
T ss_pred CCCeEEecCCcC-hhhc--ccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----CCH
Confidence 566777776321 1111 000 23445567777765 88899999999999988999999999876 345
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhh
Q 004753 516 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 594 (732)
Q Consensus 516 ~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~ 594 (732)
..+.+.+.+.|+ .++|.|.|. .++....|..+|+++-|+.+ +.|++++|||++|+|||+..... +...+.
T Consensus 222 ~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~-----~~~~~~ 292 (348)
T cd03820 222 EALEALIKELGL-EDRVILLGF---TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPT-----GPSEII 292 (348)
T ss_pred HHHHHHHHHcCC-CCeEEEcCC---cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCC-----chHhhh
Confidence 667777888898 588999987 46788899999999999988 55899999999999999854221 111222
Q ss_pred hcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 004753 595 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 650 (732)
Q Consensus 595 ~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e 650 (732)
.-|..+++. .|.+++++...++..|++.+..+++..+.... .|+++.+++.++
T Consensus 293 ~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 347 (348)
T cd03820 293 EDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAE---RFSIENIIKQWE 347 (348)
T ss_pred ccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HhCHHHHHHHhc
Confidence 223344554 46699999999999999999999988865442 378888877664
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=2.3e-13 Score=138.01 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH---HHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (732)
++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|++.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 46789999999999999999999999999999875 68899999999999999999999999999998775 3444
Q ss_pred HHHHHHHh-hhhHhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 76 MAIALTDL-GTKVKLEGDINQGVAYYKKALYYNWHYADA 113 (732)
Q Consensus 76 la~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 113 (732)
++.++... +..+...|++++|++.+++++..+|++..+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 44444332 112222356666666666666666665444
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.57 E-value=2.5e-13 Score=146.04 Aligned_cols=331 Identities=16% Similarity=0.098 Sum_probs=203.9
Q ss_pred ccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC-------CHHHHHHHH
Q 004753 301 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------DEKKVAAMV 373 (732)
Q Consensus 301 IGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i 373 (732)
|.++.+.+........+..+.......++++.+++.....+ ....+.. .+-.+..+... ....+.+.+
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-~~~~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-LGEELEE----AGVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-hhHHHHh----cCCeEEEEecccccccHHHHHHHHHHH
Confidence 34455555445566666677777777788887776543322 1122222 11112222111 124677888
Q ss_pred HhCCCcEEEeCCCCCCCCchhhhcc-CCCCeEEecccCCCCCC--------------CCCccEEEecCCCCCcCcc--cC
Q 004753 374 REDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTG--------------LPTIDYRITDSLADPPETK--QK 436 (732)
Q Consensus 374 ~~d~~Dilvdl~g~t~~~~~~~~a~-r~Apvq~~~~g~p~t~g--------------~~~~Dy~~~d~~~~p~~~~--~~ 436 (732)
+..++||++....++.......... +-.|+..+..+.....+ ....|.+++..-..-.... ..
T Consensus 77 ~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 156 (365)
T cd03807 77 RRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGY 156 (365)
T ss_pred HhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCC
Confidence 9999999987654432211111111 34466666666443321 1223443321100000001 12
Q ss_pred CccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 004753 437 HVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 511 (732)
Q Consensus 437 ~~E~l~~lp~~~~~--~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 511 (732)
-.+++..+|+..-. +.+..... ..+...+++++.++|+.++++ .|..+.+++++.++....|+.+|+++|.+.
T Consensus 157 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~-- 234 (365)
T cd03807 157 PPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGP-- 234 (365)
T ss_pred ChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCc--
Confidence 24566667763211 11111100 011223455677888888887 788999999999999999999999998763
Q ss_pred HHHHHHHHHHHH-HcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccch
Q 004753 512 DSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 512 ~~~~~~~~~~~~-~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
....+..... +.|+ .++|.|.|.. .+...+|..+|+++-|+.+ +.+++++|||++|+|||+......
T Consensus 235 --~~~~~~~~~~~~~~~-~~~v~~~g~~---~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~----- 303 (365)
T cd03807 235 --DRANLELLALKELGL-EDKVILLGER---SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDN----- 303 (365)
T ss_pred --chhHHHHHHHHhcCC-CceEEEcccc---ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCCh-----
Confidence 2334444444 7788 5889999864 4677888999999999988 668899999999999998443311
Q ss_pred hHHhhhcCCCccc--cCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 590 VSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 590 ~s~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
..++.. .+++ ..|.+++++....+.+|++.+..+++..++.... .|+++.+++.++++|+
T Consensus 304 ~e~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 304 AELVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEE--NFSIEAMVEAYEELYR 365 (365)
T ss_pred HHHhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 112222 3333 3689999999999999999999998888877654 4899999999999884
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.57 E-value=5.9e-13 Score=145.26 Aligned_cols=246 Identities=15% Similarity=0.170 Sum_probs=189.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH---
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI--- 78 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--- 78 (732)
.+.|+++..|..+++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.++.-.+++.........
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 46788888888888888888888888888 44578888888888888888888888888888877764321110000
Q ss_pred -----------HH-----HH-----------------hhhhHhhcCCHHHHHHHHHHHHHh--------C-----C----
Q 004753 79 -----------AL-----TD-----------------LGTKVKLEGDINQGVAYYKKALYY--------N-----W---- 108 (732)
Q Consensus 79 -----------~~-----~~-----------------lg~~~~~~g~~~~A~~~~~~al~~--------~-----p---- 108 (732)
+- .. .+.......+..+|.+.++++... . |
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 00 00 011111223444444444444322 0 1
Q ss_pred --CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004753 109 --HY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 179 (732)
Q Consensus 109 --~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 179 (732)
.. ...|...+..+...++.++|..++.++-++.|.....|+..|.++...|++++|.+.|..++.++|++.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 10 134667788888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 180 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 180 ~~~~~la~~~~~~g~~~eA~~--~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
.+...+|.++.+.|+..-|.+ .+..+++++|.+.++|+.+|.++.++|+.++|.++|.-++++.+.++.
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999998888887 999999999999999999999999999999999999999999887763
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.57 E-value=6.8e-13 Score=131.77 Aligned_cols=213 Identities=18% Similarity=0.197 Sum_probs=189.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCH
Q 004753 32 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 111 (732)
Q Consensus 32 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 111 (732)
+|.+..-++.+|..++..|++..|+..|..+++.+|++..+.+..+.+ |...|+-.-|+.-+.+.+++.|+..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~-------yLAmGksk~al~Dl~rVlelKpDF~ 106 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATV-------YLAMGKSKAALQDLSRVLELKPDFM 106 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHH-------HhhhcCCccchhhHHHHHhcCccHH
Confidence 455677889999999999999999999999999999987665555544 4455688999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACN------------NLGVIYKDRDNLDKAVECYQMALSIKP 176 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p 176 (732)
.+....|.+++++|++++|..-|++.++.+|++ .+++. .....+...|+...|+++..+.+++.|
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 999999999999999999999999999999864 22222 223345567999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 177 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 177 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
-++..+...+.||...|+..+|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+.
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876554
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.57 E-value=3.7e-12 Score=137.69 Aligned_cols=205 Identities=17% Similarity=0.065 Sum_probs=168.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
+.+|..+|..+...|+.+++.+.+.++.+..+.+ .+.....+.++...|++++|.+.++++++..|++...+.. +.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 5678899999999999999999999988876643 5567788999999999999999999999999998755544 33
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 158 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (732)
.+..++. ..+....+.+.+......+|.....+..+|.++...|++++|++.++++++++|++..++..+|.++...
T Consensus 85 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGD---FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcc---cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 4444442 2345555555555544566777778888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 159 DNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 159 g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 210 (732)
|++++|+.++++++...|..+ ..+..++.++..+|++++|+..|++++...|
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999876433 2456799999999999999999999976665
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=5.7e-13 Score=135.13 Aligned_cols=192 Identities=19% Similarity=0.104 Sum_probs=155.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCH
Q 004753 32 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 111 (732)
Q Consensus 32 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 111 (732)
++..+..++.+|..+...|++++|+..++++++..|+++. ...+++.+|.++...|++++|+..|+++++..|++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY----AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 4557889999999999999999999999999999998752 123456677788888899999999999999999876
Q ss_pred H---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004753 112 D---AMYNLGVAYGEM--------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 180 (732)
Q Consensus 112 ~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 180 (732)
. +++.+|.++... |++++|++.+++++..+|++..+...+..+... ... ...
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~ 167 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAG 167 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHH
Confidence 5 788999999876 789999999999999999986655333322111 000 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
....+|.++...|++++|+..++++++..|+. +.+++.+|.++..+|++++|..+++......|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34578889999999999999999999997764 58999999999999999999999888776655
No 83
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=4.3e-12 Score=135.55 Aligned_cols=257 Identities=15% Similarity=0.084 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
..|..-+..+...+.++-|...|..+++..|.....|...+..-..-|..++-..++++++...|+....+...+..+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~-- 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK-- 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH--
Confidence 357777888889999999999999999999999999999999989999999999999999999998876665544443
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
...|+...|...+.++++.+|++.++|+....+.....+++.|..+|.++....|. ..+|+..+.+...+++.+
T Consensus 595 -----w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 595 -----WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVE 668 (913)
T ss_pred -----HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHH
Confidence 34579999999999999999999999999999999999999999999999887665 678888888888899999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
+|+++++++++..|+....|..+|+++.++++.+.|.+.|...++..|..+..|..|+.+-.+.|+.-.|...++++.-.
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhhhccCCcHHHH
Q 004753 243 DPDSRNAGQNRLLAMNYINEGHDDKLF 269 (732)
Q Consensus 243 ~p~~~~a~~~~~la~~~~~~~~~~~a~ 269 (732)
+|++...+... ...-+..|..+++-
T Consensus 749 NPk~~~lwle~--Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 749 NPKNALLWLES--IRMELRAGNKEQAE 773 (913)
T ss_pred CCCcchhHHHH--HHHHHHcCCHHHHH
Confidence 99987665442 22334455555443
No 84
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.56 E-value=5.3e-14 Score=154.92 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=128.8
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC-----cEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN-----SRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLI 538 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~-----~~l~l~~~~~~--~~~~~~~~~~~~~~~Gv~~~rv~~~~~~ 538 (732)
.+..+|++++++ .|....++++|..+.+..|+ .+|+|+|++.. +....+.+++.++++|+ .++|.|+|.+
T Consensus 235 ~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l-~~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL-EDKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC-CCeEEEecCC
Confidence 445678888877 89999999999999988775 89999987632 22466788888999999 5899999998
Q ss_pred CCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCC-CcccccchhHHhh--hcCCCccccCCHHHHHHHHH
Q 004753 539 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAG-SVHAHNVGVSLLT--KVGLKHLIAKNEDEYVQLAL 614 (732)
Q Consensus 539 ~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g-~~~~~r~~~s~l~--~~gl~~~ia~~~~~y~~~a~ 614 (732)
+ .++....|+.+|++|-|+.. +.|.+.+|||++|+|||+... ..... +.. .-|-.++++.|++++++...
T Consensus 314 ~-~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~-----iv~~~~~g~~G~l~~d~~~la~ai~ 387 (419)
T cd03806 314 P-FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLD-----IVVPWDGGPTGFLASTAEEYAEAIE 387 (419)
T ss_pred C-HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchh-----eeeccCCCCceEEeCCHHHHHHHHH
Confidence 7 68999999999999998876 669999999999999998542 21111 111 02566777889999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 004753 615 QLASDVTALANLRMSLRDLMSKSPVCDGQNFAL 647 (732)
Q Consensus 615 ~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~ 647 (732)
++.+|++.........+.+.. ..|+.+.|.+
T Consensus 388 ~ll~~~~~~~~~~~~~~~~~~--~~fs~~~f~~ 418 (419)
T cd03806 388 KILSLSEEERLRIRRAARSSV--KRFSDEEFER 418 (419)
T ss_pred HHHhCCHHHHHHHHHHHHHHH--HhhCHHHhcc
Confidence 999976544433333333332 3478887753
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=9.9e-14 Score=128.66 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 132 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 132 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
.+++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++.++|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4555556555543 3445666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 004753 212 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 256 (732)
Q Consensus 212 ~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la 256 (732)
++.+++++|.++..+|++++|+..|++++++.|++...+.++..+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 666666666666666666666666666666666665555544433
No 86
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.55 E-value=9.4e-14 Score=150.70 Aligned_cols=261 Identities=18% Similarity=0.099 Sum_probs=172.8
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCchhhhcc-CCCCeEEecccCCCCCCC-------------------CCccEEEecCC
Q 004753 368 KVAAMVREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGL-------------------PTIDYRITDSL 427 (732)
Q Consensus 368 ~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~-r~Apvq~~~~g~p~t~g~-------------------~~~Dy~~~d~~ 427 (732)
.+...+++.++||+..-.+++.. .....+. .-.|+-+++.|+..+... ...|.+++-.-
T Consensus 73 ~~~~~~~~~~~dvvh~~~~~~~~-~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 151 (367)
T cd05844 73 QLRRLLRRHRPDLVHAHFGFDGV-YALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQ 151 (367)
T ss_pred HHHHHHHhhCCCEEEeccCchHH-HHHHHHHHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCH
Confidence 45557889999999654333211 1111122 235888887775433211 11355554210
Q ss_pred CCCcCcc--cCCccceEEcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEE
Q 004753 428 ADPPETK--QKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLV 503 (732)
Q Consensus 428 ~~p~~~~--~~~~E~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~ 503 (732)
..-.... ..-.+++..+|+.. ...... +. ....+..++++++++ .|..+.+++++..+.++.|+.+|+
T Consensus 152 ~~~~~~~~~~~~~~~i~vi~~g~-d~~~~~--~~-----~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ 223 (367)
T cd05844 152 FIRDRLLALGFPPEKVHVHPIGV-DTAKFT--PA-----TPARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLV 223 (367)
T ss_pred HHHHHHHHcCCCHHHeEEecCCC-CHHhcC--CC-----CCCCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEE
Confidence 0000000 11245676777531 111110 00 011233456666655 899999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-------CCcccHHHhhhcCCCe
Q 004753 504 VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-------AGTTTTCESLYMGVPC 576 (732)
Q Consensus 504 l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-------~g~~t~~eal~~GvPv 576 (732)
++|.+ +..+.+++.+++.|+ .++|.|.|.++ .++....|..+|+++-|+.+ +.+++++|||++|+||
T Consensus 224 ivG~g----~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~Pv 297 (367)
T cd05844 224 IIGDG----PLLAALEALARALGL-GGRVTFLGAQP-HAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPV 297 (367)
T ss_pred EEeCc----hHHHHHHHHHHHcCC-CCeEEECCCCC-HHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCE
Confidence 99976 566788888899999 58999999987 67889999999999988753 4588999999999999
Q ss_pred eecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 004753 577 VTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 651 (732)
Q Consensus 577 vt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~ 651 (732)
|+-.......-+ .. |-.+++. .|.+++++...++..|++.+.+++...++.... .|+++.++..+++
T Consensus 298 I~s~~~~~~e~i-----~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~l~~ 366 (367)
T cd05844 298 VATRHGGIPEAV-----ED-GETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEE--RFDLRRQTAKLEA 366 (367)
T ss_pred EEeCCCCchhhe-----ec-CCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--HCCHHHHHHHHhc
Confidence 985543222211 11 3333444 488999999999999999999999888877543 4899999988875
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.54 E-value=1.5e-12 Score=140.79 Aligned_cols=208 Identities=14% Similarity=0.117 Sum_probs=173.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCH
Q 004753 32 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 111 (732)
Q Consensus 32 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 111 (732)
+|+.+.++..+|.++...|+.+++.+.+.++.+..+.+..... .....+..+...|++++|.+.++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERE----RAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 7999999999999999999999999999999988886643211 222345566678899999999999999999999
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 112 DAMYNLGVAYGEMLK----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 112 ~~~~~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
.++.. +..+...++ ...+.+.+......+|.....+..+|.++..+|++++|+..++++++++|+++.++..+|.
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 87775 555555544 4444444444335677778888899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 188 VYTVQGKMDAAAEMIEKAIAANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 188 ~~~~~g~~~eA~~~l~~al~~~p~~~----~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999876433 3466899999999999999999999987766
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=1.6e-13 Score=127.27 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 175 (732)
Q Consensus 96 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 175 (732)
-..+++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++.++|.++...|++++|+..|+++++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356889999999875 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 176 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 226 (732)
Q Consensus 176 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~ 226 (732)
|+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888876543
No 89
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.54 E-value=2.2e-13 Score=148.10 Aligned_cols=271 Identities=19% Similarity=0.202 Sum_probs=178.1
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCchhhhccC-----CCCeEEecccCCCC-CC------------CCCccEEEecCCC
Q 004753 367 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ-----PAPVQVTWIGYPNT-TG------------LPTIDYRITDSLA 428 (732)
Q Consensus 367 ~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r-----~Apvq~~~~g~p~t-~g------------~~~~Dy~~~d~~~ 428 (732)
..+.+.|+..++||++-..... .....+++.+ --|+.++.+|.... .+ +...|++++..-.
T Consensus 74 ~~l~~~i~~~~~divh~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 152 (371)
T cd04962 74 SKIAEVAKRYKLDLLHVHYAVP-HAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSES 152 (371)
T ss_pred HHHHHHHhcCCccEEeecccCC-ccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHH
Confidence 4577788899999985321111 1112222211 34777776663211 11 1234666543210
Q ss_pred CCcCcccC--CccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEE
Q 004753 429 DPPETKQK--HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 502 (732)
Q Consensus 429 ~p~~~~~~--~~E~l~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l 502 (732)
.-...... ..+++..+|+..-. |.+... .......+++++..++++++++ .|....++++|.++..+ ++.+|
T Consensus 153 ~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l 230 (371)
T cd04962 153 LRQETYELFDITKEIEVIPNFVDEDRFRPKPD-EALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARL 230 (371)
T ss_pred HHHHHHHhcCCcCCEEEecCCcCHhhcCCCch-HHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceE
Confidence 00001122 24567777764211 111110 0111123455667788888887 89999999999987665 56899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCC
Q 004753 503 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAG 581 (732)
Q Consensus 503 ~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g 581 (732)
+++|.+ +....+++.+.+.|+ .++|.|.|.. .+...+|..+|+++-|+.+ +.|.+++|||++|+|||+...
T Consensus 231 ~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~~---~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~ 302 (371)
T cd04962 231 LLVGDG----PERSPAERLARELGL-QDDVLFLGKQ---DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNA 302 (371)
T ss_pred EEEcCC----cCHHHHHHHHHHcCC-CceEEEecCc---ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCC
Confidence 999877 345677888888999 4899999975 3566778889999999987 558899999999999998554
Q ss_pred CcccccchhHHhhhcCCCccccC--CHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 582 SVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 582 ~~~~~r~~~s~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
..... ++ .-|..+++++ |.+++++....+.+|++.+..+++..++.... .|+++.++..+++.|+++
T Consensus 303 ~~~~e-----~i-~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 303 GGIPE-----VV-KHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAE--RFDSERIVPQYEALYRRL 371 (371)
T ss_pred CCchh-----hh-cCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhC
Confidence 32222 11 1144455543 88999999999999999999999999887543 389999999999999863
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.53 E-value=2.7e-12 Score=137.67 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=213.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
.++|..+.-.++.++|.+.++..+.+++..|.+++.+...|..+...|+-++|..+...++..++.... ++.-
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v-------CwHv 80 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV-------CWHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch-------hHHH
Confidence 367888889999999999999999999999999999999999999999999999999999999888764 4455
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
+|.++....+|++|+++|+.|+.+.|+|..++..++.+..++++++.....-.+.++..|..-..|..++..+...|++.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66777778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 163 KAVECYQMALSIK---PNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 234 (732)
Q Consensus 163 ~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~ 234 (732)
.|...++...+.. |+. ..+......+..+.|.+++|++.+.+--..--+........+.++.+++++++|..
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 9999988877665 222 23555666777888998888888776543333334455668999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHH
Q 004753 235 AYEQCLKIDPDSRNAGQNRLLAM 257 (732)
Q Consensus 235 ~~~~al~l~p~~~~a~~~~~la~ 257 (732)
.|...+..+|++...+..+..++
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHH
Confidence 99999999999887666554444
No 91
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.52 E-value=4.3e-13 Score=147.79 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=156.7
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC--cEEEEecCCCCC
Q 004753 438 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN--SRLVVKCKPFCC 511 (732)
Q Consensus 438 ~E~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~l~~~~~~~ 511 (732)
.+++..+|+..- .|.|.+ ........+++++.++|++++++ .|..+.+++++.++++..|+ .+|+++|++..+
T Consensus 186 ~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 186 PDRIDVVAPGADLERFRPGD-RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGS 264 (405)
T ss_pred hhhEEEECCCcCHHHcCCCc-HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCC
Confidence 467777886421 122221 11111223455667789999988 78899999999999999888 888888864332
Q ss_pred H-HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccch
Q 004753 512 D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 512 ~-~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
. +..+.+++..++.|+. ++|.|+|.++ .++....|+.+|+++-|+-. +.|++++|||++|+|||+.......
T Consensus 265 g~~~~~~l~~~~~~~~l~-~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~---- 338 (405)
T TIGR03449 265 GLATPDALIELAAELGIA-DRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLP---- 338 (405)
T ss_pred cchHHHHHHHHHHHcCCC-ceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcH----
Confidence 2 4567888889999994 8999999987 68889999999999988876 6689999999999999985432111
Q ss_pred hHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 590 VSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 590 ~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
.++ .-|-.++++ .|.+++.+...++.+|++.+..+++..++... .|+++.++.+++++|.++.
T Consensus 339 -e~i-~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 339 -VAV-ADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAA---GFSWAATADGLLSSYRDAL 403 (405)
T ss_pred -hhh-ccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHh
Confidence 112 224445554 48999999999999999999999998887642 3899999999999999864
No 92
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.52 E-value=3.8e-11 Score=143.74 Aligned_cols=260 Identities=15% Similarity=0.118 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEIAKNNMAIAL 80 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 80 (732)
+|..+-..|.+.|++++|.++|+++.+.... +...|..+...|.+.|++++|+..|++..+. .|+ . .+|
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~-------vTY 545 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-R-------VVF 545 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-H-------HHH
Confidence 4455556666666777777777666654322 4566666677777777777777777666543 233 1 123
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYN---WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYK 156 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 156 (732)
..+...+.+.|++++|.+.+++..... ..+...|..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 334444555667888888887776531 1235567777777888888888888888777764 345667777777888
Q ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 157 DRDNLDKAVECYQMALSI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSISLAI 233 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~~~~La~~~~~~g~~~eA~ 233 (732)
+.|++++|++.|++..+. .| +...+..+...|.+.|++++|.+.++++.+.. +.+...|..+...|.+.|++++|.
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888888877665 33 35677777778888888888888888877653 345677778888888888888888
Q ss_pred HHHHHHHhh--CCCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 234 DAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 234 ~~~~~al~l--~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
+.|++..+. .|+. ...-.+...|...|+.+++.+..+++
T Consensus 705 ~lf~eM~~~g~~Pdv---vtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 705 ELYEDIKSIKLRPTV---STMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHcCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888877553 3432 22223455666777777777666554
No 93
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.52 E-value=6e-13 Score=143.72 Aligned_cols=314 Identities=15% Similarity=0.132 Sum_probs=190.0
Q ss_pred ccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC--C----HHHHHHHHH
Q 004753 301 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMVR 374 (732)
Q Consensus 301 IGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i~ 374 (732)
|-++.+++....+...+..+.......++++.+++...........+.. .+..+..+... . ...+.+.++
T Consensus 2 Il~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK----LGGKIYYIPARKKNPLKYFKKLYKLIK 77 (358)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHH----cCCeEEEecCCCccHHHHHHHHHHHHh
Confidence 4456666655566666777777777788999888765443222222221 12223222211 1 134666778
Q ss_pred hCCCcEEEeCCCCCCCCchhhhcc-CCCCeEEe-cccCCCCCCCCC----------ccEEEecCCCCCcCc--cc----C
Q 004753 375 EDKIDILVELTGHTANNKLGMMAC-QPAPVQVT-WIGYPNTTGLPT----------IDYRITDSLADPPET--KQ----K 436 (732)
Q Consensus 375 ~d~~Dilvdl~g~t~~~~~~~~a~-r~Apvq~~-~~g~p~t~g~~~----------~Dy~~~d~~~~p~~~--~~----~ 436 (732)
..++||++-...+... -..+++. ...|+-+. .++...+..... .-+..++.++.+... +. .
T Consensus 78 ~~~~Dvv~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 156 (358)
T cd03812 78 KNKYDIVHVHGSSASG-FILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKV 156 (358)
T ss_pred cCCCCEEEEeCcchhH-HHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhCC
Confidence 8999999765443211 1122222 23455433 233221111100 001112222222221 11 1
Q ss_pred CccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH
Q 004753 437 HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 512 (732)
Q Consensus 437 ~~E~l~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~ 512 (732)
..+++..+|+..-. |.+...............+.++++.++++ .|..+.+++++..+....|+.+++++|.|
T Consensus 157 ~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g---- 232 (358)
T cd03812 157 KNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG---- 232 (358)
T ss_pred CcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC----
Confidence 23566666653210 11111110011112345677889999887 89999999999999999999999999987
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhH
Q 004753 513 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 591 (732)
Q Consensus 513 ~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s 591 (732)
+..+.+++.+++.|+ .++|.|.|. ..+....|+.+|+++-|+.+ +.+.+++|||++|+|||+........
T Consensus 233 ~~~~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~----- 303 (358)
T cd03812 233 ELEEEIKKKVKELGL-EDKVIFLGV---RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEV----- 303 (358)
T ss_pred chHHHHHHHHHhcCC-CCcEEEecc---cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhh-----
Confidence 556778888888999 589999998 34667788899999999987 66899999999999999855432222
Q ss_pred HhhhcCCCccccC-CHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004753 592 LLTKVGLKHLIAK-NEDEYVQLALQLASDVTALANLRMSLRDL 633 (732)
Q Consensus 592 ~l~~~gl~~~ia~-~~~~y~~~a~~l~~d~~~~~~~r~~lr~~ 633 (732)
++.. +..-++.. +++++.+...++..|++.+..++...+..
T Consensus 304 ~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~ 345 (358)
T cd03812 304 DLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKG 345 (358)
T ss_pred hhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhcc
Confidence 2222 33334444 46999999999999998887776665544
No 94
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.52 E-value=4e-11 Score=143.56 Aligned_cols=262 Identities=15% Similarity=0.099 Sum_probs=214.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCCHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMA 77 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la 77 (732)
.+|..+...|.+.|++++|+++|+++.+..- -+...|..+...|.+.|++++|.+.|++..+. .|+. .
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v------ 580 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I------ 580 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H------
Confidence 3677888899999999999999999976532 24788999999999999999999999999763 4542 2
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVI 154 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 154 (732)
+|..+-..|.+.|++++|.+.|+++.+.+ +.+...|..+...|.+.|++++|+++|++..+. .|+ ...|..+...
T Consensus 581 -TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a 658 (1060)
T PLN03218 581 -TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDV 658 (1060)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 33344455667889999999999999876 456789999999999999999999999999876 454 6788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Q 004753 155 YKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~~~~La~~~~~~g~~~eA 232 (732)
+.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|++.|+++.+.. ..+...|..+...|.+.|++++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998764 4567899999999999999999999999987642 23577899999999999999999
Q ss_pred HHHHHHHHhh--CCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHH
Q 004753 233 IDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 276 (732)
Q Consensus 233 ~~~~~~al~l--~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~ 276 (732)
.+.|++..+. .|+.. .+ ..+...+...|+.+++.+.+....
T Consensus 739 lelf~eM~~~Gi~Pd~~-Ty--~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTI-TY--SILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHcCCCCCHH-HH--HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999988754 45422 22 233456777888888777766543
No 95
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.51 E-value=2.7e-13 Score=146.40 Aligned_cols=327 Identities=13% Similarity=0.101 Sum_probs=193.9
Q ss_pred ccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEcc-C-----CCHHHHHHHHHhC
Q 004753 303 YVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY-G-----IDEKKVAAMVRED 376 (732)
Q Consensus 303 yvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~i~~d 376 (732)
++.+.+....+......+.....+.+++|.+++...... ......... .....+. . .....+.+.|++.
T Consensus 4 ~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (360)
T cd04951 4 YVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESE--VKPPIDATI---ILNLNMSKNPLSFLLALWKLRKILRQF 78 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCC--ccchhhccc---eEEecccccchhhHHHHHHHHHHHHhc
Confidence 344445545555556667777777788888776543221 111111000 0001110 0 0123466788899
Q ss_pred CCcEEEeCCCCCCCC-chhhhccCCCCeEEecccCCCCCCCC---------CccEEEecCCCCCcCcc------cCCccc
Q 004753 377 KIDILVELTGHTANN-KLGMMACQPAPVQVTWIGYPNTTGLP---------TIDYRITDSLADPPETK------QKHVEE 440 (732)
Q Consensus 377 ~~Dilvdl~g~t~~~-~~~~~a~r~Apvq~~~~g~p~t~g~~---------~~Dy~~~d~~~~p~~~~------~~~~E~ 440 (732)
++||++-...|+... ++.-...+.-|+.++..+........ .+|+.+. +.+...+ ....++
T Consensus 79 ~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~~~~~ 155 (360)
T cd04951 79 KPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTN---VSKEALDYFIASKAFNANK 155 (360)
T ss_pred CCCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEE---EcHHHHHHHHhccCCCccc
Confidence 999997644333210 01001122335555554433211111 1222221 0111100 122467
Q ss_pred eEEcCCCccc--cCCCCCC-CCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 004753 441 LIRLPECFLC--YTPSPEA-GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 515 (732)
Q Consensus 441 l~~lp~~~~~--~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~ 515 (732)
+..+|+..-. +.+.... ...+...+++++.++|..++++ .|..+.+++++.++....|+.+|+++|.| +..
T Consensus 156 ~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~ 231 (360)
T cd04951 156 SFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG----PLR 231 (360)
T ss_pred EEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC----CcH
Confidence 8888864211 1111000 0001112345666778888865 89999999999999999999999999977 456
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhh
Q 004753 516 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 594 (732)
Q Consensus 516 ~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~ 594 (732)
+.+.+.+++.|+ .++|.|.|.. .+....|..+|+++-|+.+ +.|.+++|||++|+|||+.....+.. ++.
T Consensus 232 ~~~~~~~~~~~~-~~~v~~~g~~---~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e-----~i~ 302 (360)
T cd04951 232 ATLERLIKALGL-SNRVKLLGLR---DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVRE-----VVG 302 (360)
T ss_pred HHHHHHHHhcCC-CCcEEEeccc---ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhh-----Eec
Confidence 778888888898 4899999974 4667788889999999887 55889999999999999854332222 111
Q ss_pred hcCCCccccCCHHHHHHHHHHhh-cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 595 KVGLKHLIAKNEDEYVQLALQLA-SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 595 ~~gl~~~ia~~~~~y~~~a~~l~-~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
..|. -+...|.+++++...++. .++..+..+++. +.... ..|+++.++..+++.|+
T Consensus 303 ~~g~-~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~--~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 303 DSGL-IVPISDPEALANKIDEILKMSGEERDIIGAR-RERIV--KKFSINSIVQQWLTLYT 359 (360)
T ss_pred CCce-EeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHH--HhcCHHHHHHHHHHHhh
Confidence 1111 122478999999999998 566666666665 55543 34899999999999986
No 96
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.51 E-value=6.5e-13 Score=144.67 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=160.6
Q ss_pred CCeEEecccCCCCCCCCCccEEEecCCCCCcCcc-cCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCcEEEecC
Q 004753 401 APVQVTWIGYPNTTGLPTIDYRITDSLADPPETK-QKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFN 477 (732)
Q Consensus 401 Apvq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~-~~~~E~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 477 (732)
+|+.++++......-+...|.+|+-.-..-.... ....+++..+|+..- .|.|... .......+++.+..++++++
T Consensus 122 ~~~v~~~h~~~~~~~~~~~~~ii~~S~~~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~-~~~~~~~~~~~~~~~il~~G 200 (380)
T PRK15484 122 AKLVMHMHNAFEPELLDKNAKIIVPSQFLKKFYEERLPNADISIVPNGFCLETYQSNPQ-PNLRQQLNISPDETVLLYAG 200 (380)
T ss_pred CCEEEEEecccChhHhccCCEEEEcCHHHHHHHHhhCCCCCEEEecCCCCHHHcCCcch-HHHHHHhCCCCCCeEEEEec
Confidence 4888888765432233344555542100000001 122356667776421 1222110 00112234455567788888
Q ss_pred CC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhccc
Q 004753 478 NL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 550 (732)
Q Consensus 478 ~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~ 550 (732)
++ .|..+.++++|.++.+..|+.+|+++|++... ....+.+++.+.+.| ++|.|+|.++ ..+....|+.
T Consensus 201 rl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G~~~-~~~l~~~~~~ 276 (380)
T PRK15484 201 RISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRCIMLGGQP-PEKMHNYYPL 276 (380)
T ss_pred cCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcEEEeCCCC-HHHHHHHHHh
Confidence 87 88999999999999999999999999976321 223445655555654 5799999986 6788999999
Q ss_pred ccEEecCCCC--CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcc-c--cCCHHHHHHHHHHhhcCHHHHHH
Q 004753 551 MDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-I--AKNEDEYVQLALQLASDVTALAN 625 (732)
Q Consensus 551 ~Di~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~-i--a~~~~~y~~~a~~l~~d~~~~~~ 625 (732)
+|+++-|+.+ +.|.+++|||++|+|||+.....+.. +..-|..++ + ..|.+++.+...++.+|++. .+
T Consensus 277 aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~E------iv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~ 349 (380)
T PRK15484 277 ADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITE------FVLEGITGYHLAEPMTSDSIISDINRTLADPEL-TQ 349 (380)
T ss_pred CCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHh------hcccCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HH
Confidence 9999999875 44889999999999999954332211 112255555 3 35899999999999999975 66
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 626 LRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 626 ~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
+++..++.... .|+++.++..+++.|...
T Consensus 350 ~~~~ar~~~~~--~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 350 IAEQAKDFVFS--KYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 78877766543 499999999999999764
No 97
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.50 E-value=1.3e-13 Score=139.62 Aligned_cols=264 Identities=20% Similarity=0.253 Sum_probs=199.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
.-|.-+++.|++...+.+|+.+++...++ ..+|..||++|+.+++|++|+++-..-+.+..... ....-+.+.-+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-dklGEAKssgN 100 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-DKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-chhcccccccc
Confidence 35677889999999999999999987665 35788999999999999999988665443322111 11122445567
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLK--------------------FDMAIVFYEL 136 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 136 (732)
+|+++...|.|++|+.++.+-+.+... ...+++++|.+|...|+ ++.|.++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 888889999999999999988765432 35689999999988775 3456666666
Q ss_pred HHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 137 AFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS------QSLNNLGVVYTVQGKMDAAAEMIEK 204 (732)
Q Consensus 137 al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~l~~ 204 (732)
-+++... ...++-+||..|+-+|+|++|+..-+.-+.+..... .++.++|.++.-+|+++.|+++|++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 6655322 235778899999999999999999988887755442 4889999999999999999999999
Q ss_pred HHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHhhhccCCcHHHHHH
Q 004753 205 AIAAN----P--TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD----SRNAGQNRLLAMNYINEGHDDKLFEA 271 (732)
Q Consensus 205 al~~~----p--~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~----~~~a~~~~~la~~~~~~~~~~~a~~~ 271 (732)
.+.+. . ..+...+.||..|.-..++++|+.|+.+-+.+... ..+.+..+.++..|-..|..++++..
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 87652 2 23566789999999999999999999998876432 23445555667777777777666543
No 98
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.50 E-value=3.7e-13 Score=147.55 Aligned_cols=174 Identities=21% Similarity=0.166 Sum_probs=136.6
Q ss_pred CCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHc---CCcEEEEecCCCCC----HHHHHHHHHHHHH-cCCCCCcEEEc
Q 004753 466 LTNGFITFGSFNNL--AKITPKVLQVWARILCAV---PNSRLVVKCKPFCC----DSVRHRFLSTLEQ-LGLESLRVDLL 535 (732)
Q Consensus 466 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~l~~~~~~~----~~~~~~~~~~~~~-~Gv~~~rv~~~ 535 (732)
.+++.++|++++++ .|..+.+++++.++.... |+.+|+++|++... ....+.+++.+.+ .|+ .++|.|.
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~V~f~ 285 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLL-EDQVIFL 285 (392)
T ss_pred cCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCC-CceEEEe
Confidence 45677889999987 889999999999998887 89999999876321 1234678888888 899 4999999
Q ss_pred CCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcc-ccCCHHHHHHHH
Q 004753 536 PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDEYVQLA 613 (732)
Q Consensus 536 ~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~-ia~~~~~y~~~a 613 (732)
|.++ ..+....|..+|++|-|+.+ +.|.+.+|||++|+|||+........-+ .. |-.++ +..|++++++..
T Consensus 286 g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i-----~~-~~~g~~~~~~~~~~a~~i 358 (392)
T cd03805 286 PSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETV-----VD-GETGFLCEPTPEEFAEAM 358 (392)
T ss_pred CCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHh-----cc-CCceEEeCCCHHHHHHHH
Confidence 9988 57778899999999988877 5589999999999999985543222222 11 33344 446899999999
Q ss_pred HHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004753 614 LQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 649 (732)
Q Consensus 614 ~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~ 649 (732)
..+..|++.+..+++..++...+ .|+++.+++++
T Consensus 359 ~~l~~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~ 392 (392)
T cd03805 359 LKLANDPDLADRMGAAGRKRVKE--KFSTEAFAERL 392 (392)
T ss_pred HHHHhChHHHHHHHHHHHHHHHH--hcCHHHHhhhC
Confidence 99999999999999998887643 37888877653
No 99
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.49 E-value=1.2e-12 Score=141.27 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=137.4
Q ss_pred CCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 004753 465 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 542 (732)
Q Consensus 465 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~ 542 (732)
..+++.++|++++++ .|..+.+++++.++.+..|+.+|+++|.+. ......+...+.+.|+ .++|.|.|.++ .+
T Consensus 198 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~ 273 (375)
T cd03821 198 PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE--GGYRAELKQIAAALGL-EDRVTFTGMLY-GE 273 (375)
T ss_pred cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC--cchHHHHHHHHHhcCc-cceEEEcCCCC-hH
Confidence 456677789999977 889999999999999999999999998652 2334445555578898 58999999987 57
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHH
Q 004753 543 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 621 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~ 621 (732)
+....|..+|+++-|+.+ +.|++.+|||++|+|||+........ ++.. +..-++..+.+++++...++..|++
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCHH
Confidence 888999999999999987 66899999999999999965442222 2222 3333445666999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 004753 622 ALANLRMSLRDLMSKSPVCDGQNFALGLE 650 (732)
Q Consensus 622 ~~~~~r~~lr~~~~~~~~~~~~~~~~~~e 650 (732)
.+..+++..++.... -|+++.+++.++
T Consensus 348 ~~~~~~~~~~~~~~~--~~s~~~~~~~~~ 374 (375)
T cd03821 348 RLKAMGENGRALVEE--RFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHHHH--hcCHHHHHHHhh
Confidence 999999988887543 489999888775
No 100
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.49 E-value=4.9e-13 Score=149.91 Aligned_cols=176 Identities=13% Similarity=0.091 Sum_probs=142.1
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
+.+.++++.++|+ .|..+.+++++..+.+..|+.+|+++|++...+...+.+++.+++.|+ .++|.|+|. .+.
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l-~~~V~f~G~----~~v 364 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL-EDNVKFTGF----QNV 364 (475)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC-CCeEEEcCC----ccH
Confidence 3456788999987 788899999999999999999999999775455677888999999999 599999993 456
Q ss_pred HHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhh-----cCCCcccc--CCHHHHHHHHHHh
Q 004753 545 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-----VGLKHLIA--KNEDEYVQLALQL 616 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~-----~gl~~~ia--~~~~~y~~~a~~l 616 (732)
...|..+||++-|+.. +.+++++|||++|+|||+..-..+. .++.. +|-.+++. .|.+++++...++
T Consensus 365 ~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~-----elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~l 439 (475)
T cd03813 365 KEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCR-----ELIEGADDEALGPAGEVVPPADPEALARAILRL 439 (475)
T ss_pred HHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChH-----HHhcCCcccccCCceEEECCCCHHHHHHHHHHH
Confidence 7778889999999877 6689999999999999984322111 22222 23445553 5899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 617 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 617 ~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
.+|++.+..+++..++++.+ .|+.+.++.+++++|+
T Consensus 440 l~~~~~~~~~~~~a~~~v~~--~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 440 LKDPELRRAMGEAGRKRVER--YYTLERMIDSYRRLYL 475 (475)
T ss_pred hcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 99999999999999987754 4899999999999884
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.49 E-value=1.4e-13 Score=139.53 Aligned_cols=240 Identities=25% Similarity=0.300 Sum_probs=188.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 75 (732)
+..|..+|..|+..++|++|+++-..-+.+ .-..+.+--+||+.+...|.|++|+.++.+-+.+..+.. ....
T Consensus 55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~ 133 (639)
T KOG1130|consen 55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG-DRVL 133 (639)
T ss_pred HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh-HHHh
Confidence 456889999999999999999986543332 223456678999999999999999999999888765543 2334
Q ss_pred HHHHHHHhhhhHhhcCC--------------------HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 004753 76 MAIALTDLGTKVKLEGD--------------------INQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDM 129 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 129 (732)
-+.+++++|++|...|+ ++.|.++|..-+++.... ..++-+||..|+-+|+|+.
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 46777888877775543 455667776666654332 3467889999999999999
Q ss_pred HHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHHcCCHHH
Q 004753 130 AIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIK----P--NFSQSLNNLGVVYTVQGKMDA 197 (732)
Q Consensus 130 A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~g~~~e 197 (732)
|+..-+.-+.+... .-.++.++|.++.-.|+++.|+++|++.+.+. . ..+...+.||..|...+++++
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~k 293 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQK 293 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence 99998887776433 24588999999999999999999999987652 2 235578899999999999999
Q ss_pred HHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 198 AAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 198 A~~~l~~al~~~p------~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
||.++++-+.+.. ....+++.||..|...|..++|+.+.++.+++
T Consensus 294 AI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 294 AITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999877632 34678899999999999999999999888765
No 102
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.49 E-value=1.1e-12 Score=140.01 Aligned_cols=319 Identities=14% Similarity=0.078 Sum_probs=192.2
Q ss_pred cccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHH-HhhhCCeEEEc--cCCCHHHHHHHHHhC
Q 004753 300 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK-VMKKGGIWRDI--YGIDEKKVAAMVRED 376 (732)
Q Consensus 300 rIGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~i~~d 376 (732)
||.+++..+....+...+..+...+...+++|.++................ ........... .......+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 355666666555555556667777767788888877654332111100000 00000000000 111235788889999
Q ss_pred CCcEEEeCCCCCCCCchhhhccC-CCCeEEecccCCCCCCC-------------CCccEEEecCCCCCcCcccCC---cc
Q 004753 377 KIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTTGL-------------PTIDYRITDSLADPPETKQKH---VE 439 (732)
Q Consensus 377 ~~Dilvdl~g~t~~~~~~~~a~r-~Apvq~~~~g~p~t~g~-------------~~~Dy~~~d~~~~p~~~~~~~---~E 439 (732)
++||++-... ....-+..+..+ -.|+.+...+....... ...|.+++..-..-......+ .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999987665 222222222222 24666666664432221 345666653211111122233 36
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 004753 440 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 517 (732)
Q Consensus 440 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~ 517 (732)
++..+|+..- ................+++.++|++++++ .|....+++++..+....|+.+|+++|.+ .....
T Consensus 160 ~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~----~~~~~ 234 (353)
T cd03811 160 KIEVIYNPID-IEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDG----PLREE 234 (353)
T ss_pred ccEEecCCcC-hhhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCC----ccHHH
Confidence 7777776421 11111000000012345677889999987 78999999999999988899999999876 45567
Q ss_pred HHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhc
Q 004753 518 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 596 (732)
Q Consensus 518 ~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~ 596 (732)
+.+.....|+ .++|.|.|..+ +....+..+|+++.|+.+ +.+++++|||++|+|||+........ +..-
T Consensus 235 ~~~~~~~~~~-~~~v~~~g~~~---~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e------~i~~ 304 (353)
T cd03811 235 LEALAKELGL-ADRVHFLGFQS---NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPRE------ILED 304 (353)
T ss_pred HHHHHHhcCC-CccEEEecccC---CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHH------HhcC
Confidence 7788888898 58999999854 566788889999999988 55889999999999999854332221 1112
Q ss_pred CCCcccc--CCHHHH---HHHHHHhhcCHHHHHHHHHHHHHHh
Q 004753 597 GLKHLIA--KNEDEY---VQLALQLASDVTALANLRMSLRDLM 634 (732)
Q Consensus 597 gl~~~ia--~~~~~y---~~~a~~l~~d~~~~~~~r~~lr~~~ 634 (732)
|-.+++. .+.+++ +.....+..|++.+.+++...++..
T Consensus 305 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 305 GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 4445554 456666 6777788888888888777555443
No 103
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.49 E-value=2.6e-12 Score=138.46 Aligned_cols=326 Identities=17% Similarity=0.131 Sum_probs=200.4
Q ss_pred ccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhh-HHHHHHHhhhCCeEEEccCC-CHHHHHHHHHhCCC
Q 004753 301 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKI 378 (732)
Q Consensus 301 IGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~ 378 (732)
|.|++..|-.- ...++...+..+...+++|.+++......... ...........-..+.+..+ ....+.+.++..++
T Consensus 2 i~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (355)
T cd03799 2 IAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLGI 80 (355)
T ss_pred EEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55666665332 34445566666667788888887654332111 00000000000000001111 12356667788999
Q ss_pred cEEEeCCCCCCCCchhhhccCC--CCeEEecccCCCCCC---------CCCccEEEecCCCCCcCccc---CCccceEEc
Q 004753 379 DILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG---------LPTIDYRITDSLADPPETKQ---KHVEELIRL 444 (732)
Q Consensus 379 Dilvdl~g~t~~~~~~~~a~r~--Apvq~~~~g~p~t~g---------~~~~Dy~~~d~~~~p~~~~~---~~~E~l~~l 444 (732)
||++.-.++.. .....+..+. -|+.++..|+..... +...|++++..-..-..... ...+++..+
T Consensus 81 Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi 159 (355)
T cd03799 81 DHIHAHFGTTP-ATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVV 159 (355)
T ss_pred CEEEECCCCch-HHHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEE
Confidence 99975444322 1222233332 466666665432211 23467776532111111122 335667777
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 004753 445 PECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 522 (732)
Q Consensus 445 p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~ 522 (732)
|+.. ....... . . ....++.+++++++++ .|..+.+++++.++....|+.+|.++|.+ .....+.+.+
T Consensus 160 ~~~~-d~~~~~~---~-~-~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~~~~~~~~ 229 (355)
T cd03799 160 HCGV-DLERFPP---R-P-PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG----PLRDELEALI 229 (355)
T ss_pred eCCc-CHHHcCC---c-c-ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC----ccHHHHHHHH
Confidence 7632 1111100 0 0 1223455667777765 88999999999988888899999999877 4566778888
Q ss_pred HHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-------CCcccHHHhhhcCCCeeecCCCcccccchhHHhhh
Q 004753 523 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-------AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK 595 (732)
Q Consensus 523 ~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-------~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~ 595 (732)
++.|+ .++|.|.|.++ .++....|..+|++|-|+.+ +.+++++|||++|+|||+........ ++.
T Consensus 230 ~~~~~-~~~v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~-----~i~- 301 (355)
T cd03799 230 AELGL-EDRVTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE-----LVE- 301 (355)
T ss_pred HHcCC-CCeEEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcch-----hhh-
Confidence 88888 58899999987 68899999999999999875 45889999999999999855432222 222
Q ss_pred cCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 004753 596 VGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 648 (732)
Q Consensus 596 ~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~ 648 (732)
-|-.+++. .|.+++++....+..|++.+..+++..++.+.+ .|+.+..++.
T Consensus 302 ~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~ 354 (355)
T cd03799 302 DGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEE--EFDIRKQAAR 354 (355)
T ss_pred CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcCHHHHhhc
Confidence 13344444 389999999999999999999999998887654 3777776654
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.49 E-value=1.4e-12 Score=127.54 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=131.4
Q ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 85 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 164 (732)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 164 (732)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++...|..+|.++...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45667788887655543221 1211 112367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 165 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 165 ~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
+..|++++++.|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++.+|..+...|++++|+.+|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67777 59999999999999999999999999999999999999999999999
Q ss_pred hCCCChh
Q 004753 242 IDPDSRN 248 (732)
Q Consensus 242 l~p~~~~ 248 (732)
+.|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9887653
No 105
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.49 E-value=4.7e-13 Score=144.53 Aligned_cols=172 Identities=19% Similarity=0.204 Sum_probs=136.6
Q ss_pred CCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 466 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 466 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
..++.+++++++++ .|..+.++++|..+....|+.+|++.|.+ +....+.+...+.++ .++|.|.|.++ ..+
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~ 271 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG----PEREELEELARELGL-ADRVIFTGFVP-REE 271 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC----chHHHHHHHHHHcCC-CCcEEEeccCC-hHH
Confidence 45566778888876 68889999999999988899999999876 556778888888888 58999999987 688
Q ss_pred HHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHH-HHHHHHHHhhcCHH
Q 004753 544 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNED-EYVQLALQLASDVT 621 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~-~y~~~a~~l~~d~~ 621 (732)
....|+.+|+++.|+.+ ++|++++|||++|+|||+.....+..-+ .-|-.++++.+.+ ++++...++.+|++
T Consensus 272 ~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i------~~~~~g~~~~~~~~~~~~~i~~l~~~~~ 345 (374)
T cd03817 272 LPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLV------ADGENGFLFPPGDEALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhhhe------ecCceeEEeCCCCHHHHHHHHHHHhChH
Confidence 99999999999999977 6688999999999999996544332222 2234455554433 99999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 622 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 622 ~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
.++.+++..++..... + +.+.+++.|++
T Consensus 346 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~ 373 (374)
T cd03817 346 LRRRLSKNAEESAEKF---S---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHHHHHH---H---HHHHHHHHHhc
Confidence 9999998888776432 1 77888888765
No 106
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.49 E-value=1.9e-12 Score=142.12 Aligned_cols=204 Identities=16% Similarity=0.085 Sum_probs=140.9
Q ss_pred CCccceEEcCCCcc--ccCCCCCCCC-CCCCCCCCCCCcEEEecCC-C--CcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 004753 436 KHVEELIRLPECFL--CYTPSPEAGP-VCPTPALTNGFITFGSFNN-L--AKITPKVLQVWARILCAVPNSRLVVKCKPF 509 (732)
Q Consensus 436 ~~~E~l~~lp~~~~--~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~-~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 509 (732)
.+.+++..+|+..- .|.|.+.... ......++.+.++++.++| + .|..+.+++++.++.+..|+.+|+++|++.
T Consensus 174 ~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~ 253 (396)
T cd03818 174 ELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDG 253 (396)
T ss_pred hhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 34578888887431 1222211111 1111123455666777775 4 799999999999999999999999998631
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecC
Q 004753 510 C--------CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 510 ~--------~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~ 580 (732)
. .+..++.+.+.+.... +.++|.|+|.++ .++....|+.+|+++-|+.. +.+.+++|||+||+|||+..
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~ 331 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGRL-DLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD 331 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhccc-CcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC
Confidence 0 1113334433333211 358999999987 68889999999999887744 66889999999999999855
Q ss_pred CCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004753 581 GSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 649 (732)
Q Consensus 581 g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~ 649 (732)
......-+ .-|..++++ .|++++++...++.+|++.+.++++..|++... .|+++.++..+
T Consensus 332 ~~g~~e~i------~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~--~fs~~~~~~~~ 394 (396)
T cd03818 332 TAPVREVI------TDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR--YDLLSVCLPRQ 394 (396)
T ss_pred CCCchhhc------ccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 43222222 125556654 589999999999999999999999999988654 47887776655
No 107
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.48 E-value=7.4e-13 Score=147.08 Aligned_cols=176 Identities=13% Similarity=0.011 Sum_probs=128.2
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHH--HhHcCCcEEEEecCCCCCH-------HHHHHHHHHHHHcCCCCCcEEEc
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARI--LCAVPNSRLVVKCKPFCCD-------SVRHRFLSTLEQLGLESLRVDLL 535 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~l~~~~~~~~-------~~~~~~~~~~~~~Gv~~~rv~~~ 535 (732)
+.+..++++++|+ .|..+.++++++++ +...++.+ +++|++-..+ ...+++...+.+.|+ .++|.|.
T Consensus 245 ~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~V~f~ 322 (439)
T TIGR02472 245 DPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGKVAYP 322 (439)
T ss_pred ccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCC-CceEEec
Confidence 3445678888888 89999999999864 33334433 3456542111 123345666788899 5899999
Q ss_pred CCcCCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHH
Q 004753 536 PLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDE 608 (732)
Q Consensus 536 ~~~~~~~~~~~~~~~~----Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~ 608 (732)
|.++ .++....|..+ |+|+-|+.+ +.|.+++|||++|+|||+........ +..-|.+++++ .|+++
T Consensus 323 g~~~-~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~e------iv~~~~~G~lv~~~d~~~ 395 (439)
T TIGR02472 323 KHHR-PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRD------IIANCRNGLLVDVLDLEA 395 (439)
T ss_pred CCCC-HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHH------HhcCCCcEEEeCCCCHHH
Confidence 9876 67788888766 999999988 55999999999999999844221111 11124445553 68999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 609 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 609 y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
+.+...++.+|++.++++.+..++++.. .|+++.+++++++.+
T Consensus 396 la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 396 IASALEDALSDSSQWQLWSRNGIEGVRR--HYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHh
Confidence 9999999999999999999999987644 489999999988765
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.48 E-value=2.3e-12 Score=143.80 Aligned_cols=167 Identities=8% Similarity=0.025 Sum_probs=132.8
Q ss_pred cEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 004753 471 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 548 (732)
Q Consensus 471 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~ 548 (732)
.++++++|+ .|..+.+++++..+.+..|+.+|.++|.| +.++.+++.+++.|+ .++|.|.|.. +....|
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G----~~~~~l~~~i~~~~l-~~~V~f~G~~----~~~~~~ 390 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG----GEKQKLQKIINENQA-QDYIHLKGHR----NLSEVY 390 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc----hhHHHHHHHHHHcCC-CCeEEEcCCC----CHHHHH
Confidence 467777777 89999999999999999999999999987 567889999999999 5899999975 344567
Q ss_pred ccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC------C----HHHHHHHHHHhh
Q 004753 549 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------N----EDEYVQLALQLA 617 (732)
Q Consensus 549 ~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~------~----~~~y~~~a~~l~ 617 (732)
+.+|+++-|+-+ +.|.|++|||++|+|||+..-. .|..-+..-|.+++++. | .+++++..++|.
T Consensus 391 ~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~-----~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 391 KDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVN-----YGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF 465 (500)
T ss_pred HhCCEEEEcCccccccHHHHHHHHhCCCEEEecCC-----CCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh
Confidence 789999999987 5599999999999999984311 12222333377777764 2 778888888888
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 618 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 618 ~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
+ ++.+.++++..++.. .-|+.+..+..+++++++
T Consensus 466 ~-~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 466 N-SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred C-hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 4 556888888888753 348999999999988865
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.3e-11 Score=118.58 Aligned_cols=179 Identities=16% Similarity=0.110 Sum_probs=163.3
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
........|+.+.|..++++.....|++..+....|..+...|++++|+++|+..++-+|.+...+...-.+...+|+.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 33344456799999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQC 239 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g---~~~eA~~~~~~a 239 (732)
+|++.+.+.++..+.+.++|..++.+|...|+|++|.-++++.+-++|.++..+..+|.+++.+| ++.-|.++|.++
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887 677899999999
Q ss_pred HhhCCCChhHHHHHHHHHhhhc
Q 004753 240 LKIDPDSRNAGQNRLLAMNYIN 261 (732)
Q Consensus 240 l~l~p~~~~a~~~~~la~~~~~ 261 (732)
++++|.+..+++...++...+.
T Consensus 218 lkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 218 LKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHhChHhHHHHHHHHHHHHHHH
Confidence 9999988888777666655543
No 110
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.47 E-value=1e-12 Score=143.10 Aligned_cols=262 Identities=11% Similarity=-0.032 Sum_probs=165.7
Q ss_pred CHHHHHHHHHhCCCcEEEeCCCCCCCCc-hh-hhccCCCCeEEecccCC-CC---CCC---C---------CccEEEecC
Q 004753 365 DEKKVAAMVREDKIDILVELTGHTANNK-LG-MMACQPAPVQVTWIGYP-NT---TGL---P---------TIDYRITDS 426 (732)
Q Consensus 365 ~~~~~~~~i~~d~~Dilvdl~g~t~~~~-~~-~~a~r~Apvq~~~~g~p-~t---~g~---~---------~~Dy~~~d~ 426 (732)
...++.+.|++.++||+.=-+-.+-|.. .+ -.+.|.-++..+++..+ .- -+. . .+-.+.+|.
T Consensus 104 ~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~g~~~~~l~~~~~~~~~r~~~d~ 183 (462)
T PLN02846 104 PVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKNGRVKAFLLKYINSWVVDIYCHK 183 (462)
T ss_pred ChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhccchHHHHHHHHHHHHHHHHhcCE
Confidence 4567999999999999952222111210 11 12333334444555522 10 010 0 010012555
Q ss_pred CCCCcCcccCCccceEEcCCCccc---cCCCCCCCCCCCCCCCCCC--CcEEEecCCC--CcCCHHHHHHHHHHHhHcCC
Q 004753 427 LADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTNG--FITFGSFNNL--AKITPKVLQVWARILCAVPN 499 (732)
Q Consensus 427 ~~~p~~~~~~~~E~l~~lp~~~~~---~~~~~~~~~~~~~~~~~~~--~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~ 499 (732)
++.|......+.+..+..++ ++. |.|.... ....+. +++ .++++.++|+ .|..+.+++++.++....|+
T Consensus 184 vi~pS~~~~~l~~~~i~~v~-GVd~~~f~~~~~~--~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~ 259 (462)
T PLN02846 184 VIRLSAATQDYPRSIICNVH-GVNPKFLEIGKLK--LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSG 259 (462)
T ss_pred EEccCHHHHHHhhCEEecCc-eechhhcCCCccc--HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCC
Confidence 66666554445556655543 332 2332211 111111 233 2357788888 99999999999999998999
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeee
Q 004753 500 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT 578 (732)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt 578 (732)
.+|+|+|+| +.++++++.+.+.|++ .++ |.|... .+ ..|..+|||+-|+.+ +.|++++|||+||+|||+
T Consensus 260 ~~l~ivGdG----p~~~~L~~~a~~l~l~-~~v-f~G~~~-~~---~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa 329 (462)
T PLN02846 260 LEVDLYGSG----EDSDEVKAAAEKLELD-VRV-YPGRDH-AD---PLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 329 (462)
T ss_pred eEEEEECCC----ccHHHHHHHHHhcCCc-EEE-ECCCCC-HH---HHHHhCCEEEECCCcccchHHHHHHHHcCCcEEE
Confidence 999999998 7889999999999984 555 778643 33 455667999999998 779999999999999998
Q ss_pred cCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 579 MAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 579 ~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
.... +..++.. |-+.+...|.+++++...++..++. ..++...+ ..|+++..+.++++.|+-
T Consensus 330 ~~~~------~~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~~~--~~~~~~a~------~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 330 ANHP------SNEFFKQ-FPNCRTYDDGKGFVRATLKALAEEP--APLTDAQR------HELSWEAATERFLRVADL 391 (462)
T ss_pred ecCC------Ccceeec-CCceEecCCHHHHHHHHHHHHccCc--hhHHHHHH------HhCCHHHHHHHHHHHhcc
Confidence 5432 1122322 6666677899999999998877532 22222222 147888888888887763
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=8.1e-12 Score=143.63 Aligned_cols=212 Identities=15% Similarity=0.086 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+++..+...+...+++++|++.++.+++.+|+....|+.+|.++.+.++++++... .++...+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------------ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------------ 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------------
Confidence 46777777777888888888888888888888888888888888888877666655 5554444332
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
++ .+++++.+.+...+.+..+++.+|.+|-++|+.++|...|+++++.+|+++.+++++|..|... +++
T Consensus 98 ---------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 98 ---------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ---------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 33 4555555555556777778888888888888888888888888888888888888888888888 888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------------HHHHHHH
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------------------YNNLGVL 222 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~--------------------~~~La~~ 222 (732)
+|++++.+|+.. +...+++.++.++.++.+..+|.+.+. +.-+-..
T Consensus 167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 888888888764 556667888888888888777775443 2223367
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhHHHHH
Q 004753 223 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 253 (732)
Q Consensus 223 ~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 253 (732)
|...+++++++.+++.+++.+|+|..++...
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l 263 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREEL 263 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHH
Confidence 7888889999999999999999888776653
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.46 E-value=2.8e-11 Score=132.36 Aligned_cols=262 Identities=19% Similarity=0.166 Sum_probs=208.3
Q ss_pred hHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CH
Q 004753 3 PAYYNLGVVYSEL-----------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FE 70 (732)
Q Consensus 3 ~a~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 70 (732)
.+|..+|.+|..+ ....++++.++++++.+|.++.+.++++.-|..+++.+.|.++.+++++.++. +.
T Consensus 434 ~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~ 513 (799)
T KOG4162|consen 434 RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA 513 (799)
T ss_pred hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH
Confidence 4567777777532 23578999999999999999999999999999999999999999999999555 44
Q ss_pred HHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------
Q 004753 71 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------- 140 (732)
Q Consensus 71 ~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 140 (732)
..|..++. +...++++.+|+.....+++..++|.........+-...++.++|+..+...+.+
T Consensus 514 ~~whLLAL-------vlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~ 586 (799)
T KOG4162|consen 514 KAWHLLAL-------VLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT 586 (799)
T ss_pred HHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 45554444 4445779999999999999888875544333333333344444444333322211
Q ss_pred -----------------------------------------C-----C--------CC-----HHHHHHHHHHHHHcCCH
Q 004753 141 -----------------------------------------N-----P--------HC-----AEACNNLGVIYKDRDNL 161 (732)
Q Consensus 141 -----------------------------------------~-----p--------~~-----~~~~~~la~~~~~~g~~ 161 (732)
. | +. ...|...+..+...++.
T Consensus 587 ~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~ 666 (799)
T KOG4162|consen 587 LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND 666 (799)
T ss_pred hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence 0 0 10 23556778888899999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHH
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID--AYEQC 239 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~--~~~~a 239 (732)
++|..++.++-++.|..+..|+..|.++...|+.++|.+.|..++.++|++..+...+|.++...|+..-|.. .+..+
T Consensus 667 ~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 667 DEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888 99999
Q ss_pred HhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 240 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 240 l~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
++++|.+.++|++ ++..+...|+.+++.+-+.
T Consensus 747 lr~dp~n~eaW~~--LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 747 LRLDPLNHEAWYY--LGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HhhCCCCHHHHHH--HHHHHHHccchHHHHHHHH
Confidence 9999999999987 6777788888887666544
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=6.7e-12 Score=122.82 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=130.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 43 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 122 (732)
Q Consensus 43 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 122 (732)
+..|+..|+++......++.. +|.. .+...++.++++..++++++.+|++.+.|..+|.+|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~----------------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~ 84 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH----------------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYL 84 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc----------------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 456788888887644432221 1111 0112457889999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 123 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 199 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 199 (732)
..|++++|+..|+++++++|++..++..+|.++ ...|+ +++|.+.++++++.+|++..++.++|..+...|++++|+
T Consensus 85 ~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 85 WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999975 67777 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHH
Q 004753 200 EMIEKAIAANPTYAE 214 (732)
Q Consensus 200 ~~l~~al~~~p~~~~ 214 (732)
.+++++++..|.+..
T Consensus 165 ~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 165 ELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhhCCCCcc
Confidence 999999999887543
No 114
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.45 E-value=2.2e-11 Score=143.36 Aligned_cols=262 Identities=15% Similarity=0.072 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH--
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEIAKNNMAIA-- 79 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~-- 79 (732)
++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+++|++..+. .|+. ..+..+..+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-~t~~~ll~a~~ 336 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-FTFSIMIRIFS 336 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Confidence 34556667777777777777776642 345667777777777777777777777776553 2322 122222222
Q ss_pred --------------------------HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 80 --------------------------LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 133 (732)
Q Consensus 80 --------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 133 (732)
+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 22334455666777777777776543 3456677777788888888888888
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 134 YELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 134 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
|++..+. .| +...+..+...+...|+.++|.++|+...+... .+...|..+...|.+.|++++|.+.++++- ..
T Consensus 414 f~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~ 491 (697)
T PLN03081 414 FERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FK 491 (697)
T ss_pred HHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC
Confidence 8877654 33 355666677777778888888888887765432 223467778888888888888888877641 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 210 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 210 p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
.+..+|..+...+...|+.+.|...+++.+++.|++...+ ..+...|...|+.+++.+..+...+
T Consensus 492 -p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y--~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 492 -PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY--VVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred -CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch--HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3456788888889999999999999999999999866544 3466778888988888777665443
No 115
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.44 E-value=1.1e-12 Score=144.64 Aligned_cols=261 Identities=10% Similarity=-0.058 Sum_probs=163.9
Q ss_pred CHHHHHHHHHhCCCcEEEeCCCCCCCCc--hhhhccCCCCeEEecccCC----CCCCCCC------------ccEEEecC
Q 004753 365 DEKKVAAMVREDKIDILVELTGHTANNK--LGMMACQPAPVQVTWIGYP----NTTGLPT------------IDYRITDS 426 (732)
Q Consensus 365 ~~~~~~~~i~~d~~Dilvdl~g~t~~~~--~~~~a~r~Apvq~~~~g~p----~t~g~~~------------~Dy~~~d~ 426 (732)
+..++.+.|.+.++||++=-+-..-|.. -...+.|.-||..+++-.. ..-+... +-.+-+|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 4578999999999999973221111222 2223455558776665422 1122111 11111566
Q ss_pred CCCCcCcccCCccceEEcCCCcc---ccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE
Q 004753 427 LADPPETKQKHVEELIRLPECFL---CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 501 (732)
Q Consensus 427 ~~~p~~~~~~~~E~l~~lp~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 501 (732)
++.|.+....+...++...+ ++ -|.|....... ...+++........++|+ .|....++++|..+....|+.+
T Consensus 502 VIaPS~atq~L~~~vI~nVn-GVDte~F~P~~r~~~~-r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvr 579 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVH-GVNPKFLKIGEKVAEE-RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFN 579 (794)
T ss_pred EEcCCHHHHHhcccceeecc-cccccccCCcchhHHH-HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeE
Confidence 66766554444334443322 22 13333221111 111221111113345676 9999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecC
Q 004753 502 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 502 l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~ 580 (732)
|+|+|+| +.++.+++.+.++|+ +|.|+|...+ ....|+.+|||+-|+.+ +.|++++|||+||+|||+..
T Consensus 580 LvIVGDG----P~reeLe~la~eLgL---~V~FLG~~dd---~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd 649 (794)
T PLN02501 580 LDVFGNG----EDAHEVQRAAKRLDL---NLNFLKGRDH---ADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCAD 649 (794)
T ss_pred EEEEcCC----ccHHHHHHHHHHcCC---EEEecCCCCC---HHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEec
Confidence 9999988 778889998999988 3899988542 23577779999999998 66999999999999999865
Q ss_pred CCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 004753 581 GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 652 (732)
Q Consensus 581 g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~ 652 (732)
.... .++. -|-..++..|.+++++.+.++..|++.+...++ ..-++++.++..+++.
T Consensus 650 ~pG~------e~V~-~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a--------~~~~SWeAaadrLle~ 706 (794)
T PLN02501 650 HPSN------EFFR-SFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQ--------RYNLSWEAATQRFMEY 706 (794)
T ss_pred CCCC------ceEe-ecCCeEecCCHHHHHHHHHHHHhCchhhhHHHH--------HhhCCHHHHHHHHHHh
Confidence 3311 1111 144556678999999999999998864422221 1146788877777754
No 116
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.44 E-value=1.6e-12 Score=140.63 Aligned_cols=329 Identities=13% Similarity=0.070 Sum_probs=187.1
Q ss_pred cccccCCCcc-cChhhhhhhHHhccccCC--cEEEEEEeccccCChhh-HHHHHHHhhhCCeEEEccC-CCHHHHHHHHH
Q 004753 300 VIGYVSPDYF-THSVSYFIEAPLVYHDYQ--NYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYG-IDEKKVAAMVR 374 (732)
Q Consensus 300 rIGyvS~d~~-~h~v~~~~~~~l~~~d~~--~fev~~y~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~ 374 (732)
+|.++...+. -..+..++..+...+... .+++++++.....+... ..+.-...........+.. .....+.+.|+
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 81 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWLK 81 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHHH
Confidence 4555544332 144666666677776666 79998887654433211 1111000000000000000 01256778899
Q ss_pred hCCCcEEEeCCCCCCCCchhhhccCC--CCe-EEeccc--CCCCCC-----CCCccEEEecCCCCCcCcc--cCCccceE
Q 004753 375 EDKIDILVELTGHTANNKLGMMACQP--APV-QVTWIG--YPNTTG-----LPTIDYRITDSLADPPETK--QKHVEELI 442 (732)
Q Consensus 375 ~d~~Dilvdl~g~t~~~~~~~~a~r~--Apv-q~~~~g--~p~t~g-----~~~~Dy~~~d~~~~p~~~~--~~~~E~l~ 442 (732)
+.++||++..+... .....++.+. .|+ .++|.. .+.... +...|++++-.-..-.... ....+++.
T Consensus 82 ~~~~Dii~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~~ki~ 159 (359)
T PRK09922 82 ETQPDIVICIDVIS--CLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISAQRIS 159 (359)
T ss_pred hcCCCEEEEcCHHH--HHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCHHHEE
Confidence 99999997543211 1222222211 122 244332 111111 2234555542100000000 11135666
Q ss_pred EcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 004753 443 RLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 518 (732)
Q Consensus 443 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~ 518 (732)
.+|+.. ... .... +.+ ...+.++|++++|+ .|....+++.+..+ .++.+|+++|.| +.++.+
T Consensus 160 vi~N~i-d~~--~~~~---~~~-~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~---~~~~~l~ivG~g----~~~~~l 225 (359)
T PRK09922 160 VIYNPV-EIK--TIII---PPP-ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQT---TGEWQLHIIGDG----SDFEKC 225 (359)
T ss_pred EEcCCC-CHH--HccC---CCc-ccCCCcEEEEEEEEecccCcCHHHHHHHHHhh---CCCeEEEEEeCC----ccHHHH
Confidence 676632 100 0000 011 12345678888886 36667777777655 347899999987 557788
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCc-HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecC-CCcccccchhHHhhh
Q 004753 519 LSTLEQLGLESLRVDLLPLILLN-HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTK 595 (732)
Q Consensus 519 ~~~~~~~Gv~~~rv~~~~~~~~~-~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~s~l~~ 595 (732)
++..++.|+ .++|.|.|.+.+. ++....|..+|+++-|+.+ +.|.+++|||++|+|||+.. ..... .++ .
T Consensus 226 ~~~~~~~~l-~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~-----eiv-~ 298 (359)
T PRK09922 226 KAYSRELGI-EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPR-----DII-K 298 (359)
T ss_pred HHHHHHcCC-CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChH-----HHc-c
Confidence 888999999 5899999987543 4455678899999999988 55999999999999999855 22111 122 2
Q ss_pred cCCCccc--cCCHHHHHHHHHHhhcCHHHH--HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 596 VGLKHLI--AKNEDEYVQLALQLASDVTAL--ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 596 ~gl~~~i--a~~~~~y~~~a~~l~~d~~~~--~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
-|..+++ ..|.+++++....+.+|++.+ .+.++.++ -|..+.|++++-++|..+.+
T Consensus 299 ~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 299 PGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIE-------RFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred CCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHH-------HhhHHHHHHHHHHHHHHHhc
Confidence 2555555 478999999999999999743 33333222 24578899999999888753
No 117
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.43 E-value=3.4e-12 Score=137.47 Aligned_cols=325 Identities=16% Similarity=0.104 Sum_probs=197.5
Q ss_pred ChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHH--------H-Hhh--hCCeEEEccCCCHHHHHHHHH--hCC
Q 004753 311 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE--------K-VMK--KGGIWRDIYGIDEKKVAAMVR--EDK 377 (732)
Q Consensus 311 h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~--------~-~~~--~~~~~~~~~~~~~~~~~~~i~--~d~ 377 (732)
......+..++......+++|.+++.............. . ... ....+..........+...|+ ..+
T Consensus 14 ~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (377)
T cd03798 14 GGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFR 93 (377)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcccCC
Confidence 444555666677776778888888765433221110000 0 000 000000000011346778888 999
Q ss_pred CcEEEeCCCCCCCCchhhhccCC--CCeEEecccCCCCCC-------------CCCccEEEecCCCCCcCcccC--Cccc
Q 004753 378 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQK--HVEE 440 (732)
Q Consensus 378 ~Dilvdl~g~t~~~~~~~~a~r~--Apvq~~~~g~p~t~g-------------~~~~Dy~~~d~~~~p~~~~~~--~~E~ 440 (732)
+||++-......+.. .....+. .|+-+..++...... +...|++++..-......... ...+
T Consensus 94 ~dii~~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 172 (377)
T cd03798 94 PDLIHAHFAYPDGFA-AALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEK 172 (377)
T ss_pred CCEEEEeccchHHHH-HHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCc
Confidence 999976533332222 2222222 477776666432211 223566665321111111122 4566
Q ss_pred eEEcCCCccccCCCCCCCCCC---CCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 004753 441 LIRLPECFLCYTPSPEAGPVC---PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 515 (732)
Q Consensus 441 l~~lp~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~ 515 (732)
+..+|++. .+....+... ......++.+++++++++ .|....+++++..+....|+.+|++.|.+ ...
T Consensus 173 ~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~----~~~ 245 (377)
T cd03798 173 VTVIPNGV---DTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG----PLR 245 (377)
T ss_pred eEEcCCCc---CcccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC----cch
Confidence 77777632 1111000000 011234567788888877 78889999999999888899999999876 445
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhh
Q 004753 516 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 594 (732)
Q Consensus 516 ~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~ 594 (732)
..+.+.++..++ .++|.+.|.++ ..+....|..+|+++.|+.+ +.+++++|||++|+|||+.....+.. ++.
T Consensus 246 ~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~-----~~~ 318 (377)
T cd03798 246 EALEALAAELGL-EDRVTFLGAVP-HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPE-----IIT 318 (377)
T ss_pred HHHHHHHHhcCC-cceEEEeCCCC-HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHH-----Hhc
Confidence 667777778888 48899999987 68889999999999999877 66889999999999999855332221 111
Q ss_pred hcCCCccc--cCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 595 KVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 595 ~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
-+..+++ ..|.+++++...++..|+.. .+....+.... ..|+++.++..+.++|++
T Consensus 319 -~~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 319 -DGENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVA--ERFSWENVAERLLELYRE 376 (377)
T ss_pred -CCcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHH--HHhhHHHHHHHHHHHHhh
Confidence 1333344 35899999999999999876 33444343333 347899999999988875
No 118
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.43 E-value=2.6e-12 Score=140.56 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=138.9
Q ss_pred CCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcC-CcCCc
Q 004753 465 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP-LILLN 541 (732)
Q Consensus 465 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~-~~~~~ 541 (732)
+++++.++|+.++++ .|..+.+++++.++. ++.+|+++|++...+...+.+++.+...+...++|+|++ .++ .
T Consensus 196 ~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 271 (388)
T TIGR02149 196 GIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLP-K 271 (388)
T ss_pred CCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCC-H
Confidence 456677788999988 788899999888763 577888887665555667788888888887666788764 455 6
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCH------HHHHHH
Q 004753 542 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNE------DEYVQL 612 (732)
Q Consensus 542 ~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~------~~y~~~ 612 (732)
.+....|..+||+|-|+.+ +.|.+++|||++|+|||+........ ++. -|..+++. .|. +++++.
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e-----~i~-~~~~G~~~~~~~~~~~~~~~~l~~~ 345 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPE-----VVV-DGETGFLVPPDNSDADGFQAELAKA 345 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHH-----Hhh-CCCceEEcCCCCCcccchHHHHHHH
Confidence 8899999999999999988 56899999999999999854332111 111 23344444 344 788999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 613 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 613 a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
..++..|++.+..+++..++...+ .|+++.++.++.+.|+++
T Consensus 346 i~~l~~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 346 INILLADPELAKKMGIAGRKRAEE--EFSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhh
Confidence 999999999999999988876544 389999999999999876
No 119
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=2.7e-10 Score=126.03 Aligned_cols=277 Identities=16% Similarity=0.075 Sum_probs=202.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
++.+.....++...|++++|++++++....-.+....+-..|.++.++|++++|...|...++.+|++...+..+..++.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46778889999999999999999999988888989999999999999999999999999999999999877776665552
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCC--------------------------------HHHHHHHHHHHHHcCCHHH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHY--------------------------------ADAMYNLGVAYGEMLKFDM 129 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------~~~~~~la~~~~~~g~~~~ 129 (732)
... -....+.+.-...|++.....|.. +....++-.+|....+.+-
T Consensus 84 ~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 84 LQL--QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hhc--ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 211 011224556666666665555432 1223333333332222222
Q ss_pred HHHHHHHHHhc---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 130 AIVFYELAFHF---------------NPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 130 A~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
..+++...... .|.. ..+++.++..|...|++++|+++++++++..|..++.+...|.++...
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 22233322211 1111 246688899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------hHHHHHHHHHhhhccCCc
Q 004753 193 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR-------NAGQNRLLAMNYINEGHD 265 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~-------~a~~~~~la~~~~~~~~~ 265 (732)
|++.+|.++++.+-.++..+-.+....+..+.+.|+.++|.+.+....+.+-+.. -.|+..-.+.+|...|+.
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999888888899999999999999999888765542111 133334456667777777
Q ss_pred HHHHHHHHHHHHHHh
Q 004753 266 DKLFEAHRDWGKRFM 280 (732)
Q Consensus 266 ~~a~~~~~~~~~~~~ 280 (732)
..++..+....+.+.
T Consensus 322 ~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 322 GLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766655544444443
No 120
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.43 E-value=3.5e-12 Score=138.78 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=128.1
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
...++++++++ .|..+.+++++.++....|+.+|.++|.+ .....+....++.|+ .++|.|.|.. .+...
T Consensus 203 ~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~~---~~~~~ 274 (372)
T cd04949 203 KPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYG----DEEEKLKELIEELGL-EDYVFLKGYT---RDLDE 274 (372)
T ss_pred CCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeC----chHHHHHHHHHHcCC-cceEEEcCCC---CCHHH
Confidence 34456677766 89999999999999999999999999877 345667777788898 5899999953 46778
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC--CHHHHHHHHHHhhcCHHHH
Q 004753 547 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~ 623 (732)
.|+.+|++++|+.+ +.|.+.+|||++|+|||+.... .|..-+..-|..+++.+ |.+++++....+.+|++.+
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~-----~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~ 349 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVN-----YGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLL 349 (372)
T ss_pred HHhhhhEEEecccccccChHHHHHHhCCCCEEEecCC-----CCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHH
Confidence 88999999999988 6689999999999999985421 01222333366777776 9999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHH
Q 004753 624 ANLRMSLRDLMSKSPVCDGQNFAL 647 (732)
Q Consensus 624 ~~~r~~lr~~~~~~~~~~~~~~~~ 647 (732)
+.+++..++... -|+.+.++.
T Consensus 350 ~~~~~~a~~~~~---~~s~~~~~~ 370 (372)
T cd04949 350 QKFSEAAYENAE---RYSEENVWE 370 (372)
T ss_pred HHHHHHHHHHHH---HhhHHHHHh
Confidence 999988887632 366666554
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.43 E-value=2e-11 Score=118.69 Aligned_cols=179 Identities=22% Similarity=0.219 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 53 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 132 (732)
Q Consensus 53 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (732)
..+...+-+....+|++..+ .+++..++. .|+-+.+..+..++...+|.+......+|...+..|++.+|+.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~ 121 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVS 121 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHH
Confidence 33666666667778877765 555555444 5588888888888888888888888888999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 133 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
.++++..+.|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+.+
T Consensus 122 ~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 122 VLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred HHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 213 AEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 213 ~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
..+..+|+.+...+|++++|...-.+-
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 889999999999999999988766554
No 122
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.41 E-value=5.4e-12 Score=136.13 Aligned_cols=306 Identities=17% Similarity=0.093 Sum_probs=189.9
Q ss_pred ChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccC---------CCHHHHHHHHHhCCCcEE
Q 004753 311 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG---------IDEKKVAAMVREDKIDIL 381 (732)
Q Consensus 311 h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~d~~Dil 381 (732)
..+......+.......+++|++++..... ...+.. .+..+..+.. ..-..+.+.++..++||+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii 82 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRL---VAELEA----EGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDIV 82 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCch---HHHHHh----cCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCEE
Confidence 345555566666667778888887653321 111221 1122333211 012456778899999999
Q ss_pred EeCCCCCCCCchhhhcc--CCCCeEEecccCCCCC-----CCCCccEEEecCCCCCcCcc---cCCccceEEcCCCcccc
Q 004753 382 VELTGHTANNKLGMMAC--QPAPVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETK---QKHVEELIRLPECFLCY 451 (732)
Q Consensus 382 vdl~g~t~~~~~~~~a~--r~Apvq~~~~g~p~t~-----g~~~~Dy~~~d~~~~p~~~~---~~~~E~l~~lp~~~~~~ 451 (732)
+.-+.+.. -...++. .-.|+..+++|+.... .+...|.+++-.-....... ....+++..+|+.. ..
T Consensus 83 ~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi-~~ 159 (355)
T cd03819 83 HARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGV-DL 159 (355)
T ss_pred EECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCc-cc
Confidence 76443322 1222222 2358877777754322 12345666653210001111 12246777788642 11
Q ss_pred CCCCCCCCC-------CCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 004753 452 TPSPEAGPV-------CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 522 (732)
Q Consensus 452 ~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~ 522 (732)
......... +.....+++.++++.++++ .|..+.+++++..+....|+.+|+++|.+...+...+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~ 239 (355)
T cd03819 160 DRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELI 239 (355)
T ss_pred cccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHH
Confidence 111000000 0011245667788888887 8999999999999988889999999998755556667777888
Q ss_pred HHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCC-CC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCc
Q 004753 523 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH 600 (732)
Q Consensus 523 ~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~-~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~ 600 (732)
.+.|+ .++|.|.|. ..+....|..+|+++-|+ .+ +.|++++|||++|+|||+........ ++.. |..+
T Consensus 240 ~~~~~-~~~v~~~g~---~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e-----~i~~-~~~g 309 (355)
T cd03819 240 KRLGL-QDRVTFVGH---CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARE-----TVRP-GETG 309 (355)
T ss_pred HHcCC-cceEEEcCC---cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHH-----HHhC-CCce
Confidence 88898 489999998 357788888899999998 44 66899999999999999865332222 2222 3344
Q ss_pred ccc--CCHHHHHHHHHHhh-cCHHHHHHHHHHHHHHhhc
Q 004753 601 LIA--KNEDEYVQLALQLA-SDVTALANLRMSLRDLMSK 636 (732)
Q Consensus 601 ~ia--~~~~~y~~~a~~l~-~d~~~~~~~r~~lr~~~~~ 636 (732)
++. .|.+++++....+. .|++.+.++++..++....
T Consensus 310 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 310 LLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred EEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 443 57888888774444 5899999999998887643
No 123
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.41 E-value=5.2e-12 Score=139.50 Aligned_cols=205 Identities=17% Similarity=0.151 Sum_probs=151.8
Q ss_pred ccceEEcCCCccc--cCCCCCCC--CCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 004753 438 VEELIRLPECFLC--YTPSPEAG--PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 511 (732)
Q Consensus 438 ~E~l~~lp~~~~~--~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 511 (732)
.+++..+|+..-. |.|..... ..+...+++++.++++.++++ .|....+++++.++ ...|+.+|+++|+|
T Consensus 193 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g--- 268 (412)
T PRK10307 193 AEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQG--- 268 (412)
T ss_pred cccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCC---
Confidence 3578888874311 22211100 011223456777888889987 78889999998765 56789999999987
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCC-----cccHHHhhhcCCCeeecCCCcccc
Q 004753 512 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-----TTTTCESLYMGVPCVTMAGSVHAH 586 (732)
Q Consensus 512 ~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g-----~~t~~eal~~GvPvvt~~g~~~~~ 586 (732)
+.++.+++.+++.|++ +|.|+|.++ .++....|+.+||++-|+...+ .+.+.|||++|+|||+.... +
T Consensus 269 -~~~~~l~~~~~~~~l~--~v~f~G~~~-~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~---g 341 (412)
T PRK10307 269 -GGKARLEKMAQCRGLP--NVHFLPLQP-YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEP---G 341 (412)
T ss_pred -hhHHHHHHHHHHcCCC--ceEEeCCCC-HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCC---C
Confidence 5678888889999994 699999987 6788899999999998887644 23468999999999985321 0
Q ss_pred cchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 587 NVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 587 r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
.....+.. + .++++ .|.+++.+...+|..|++.+..+++..++.... .|+++..++++++.|+++..
T Consensus 342 ~~~~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 342 TELGQLVE--G-IGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAER--TLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred chHHHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHhc
Confidence 00012232 3 44443 689999999999999999999999999987643 48999999999999998764
No 124
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.41 E-value=7.4e-12 Score=134.99 Aligned_cols=309 Identities=13% Similarity=0.068 Sum_probs=183.4
Q ss_pred hhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEc------c--CCCHHHHH-HHHHhCCCcEEEe
Q 004753 313 VSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI------Y--GIDEKKVA-AMVREDKIDILVE 383 (732)
Q Consensus 313 v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~-~~i~~d~~Dilvd 383 (732)
+..++..+.....+.+++|.+++............. ......+ . ..+..-.. -.+...++||++-
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~ 89 (357)
T cd03795 16 IEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERN------GHRVIRAPSLLNVASTPFSPSFFKQLKKLAKKADVIHL 89 (357)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhcc------CceEEEeecccccccccccHHHHHHHHhcCCCCCEEEE
Confidence 344455666667777888888876543221111100 0011111 1 11111111 1156889999975
Q ss_pred CCCCCCCCchhhhccCCCCeEEecccCCCCCC-------------CCCccEEEecCCCCCc--CcccCCccceEEcCCCc
Q 004753 384 LTGHTANNKLGMMACQPAPVQVTWIGYPNTTG-------------LPTIDYRITDSLADPP--ETKQKHVEELIRLPECF 448 (732)
Q Consensus 384 l~g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g-------------~~~~Dy~~~d~~~~p~--~~~~~~~E~l~~lp~~~ 448 (732)
-...........+..+..|+.++|.+...... +...|.+++..-..-. .....+.+++..+|+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi 169 (357)
T cd03795 90 HFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGL 169 (357)
T ss_pred ecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCC
Confidence 43333222222223345677778765432221 1224555542100000 01123347788888743
Q ss_pred cccCCCCCCCCCC-CCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc
Q 004753 449 LCYTPSPEAGPVC-PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL 525 (732)
Q Consensus 449 ~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~ 525 (732)
-. .......... .....+.+.+++++++++ .|....+++++.++. +.+|+++|.| +....+.+.+.+.
T Consensus 170 ~~-~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g----~~~~~~~~~~~~~ 240 (357)
T cd03795 170 DP-ARYPRPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEG----PLEAELEALAAAL 240 (357)
T ss_pred Ch-hhcCCcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCC----hhHHHHHHHHHhc
Confidence 21 1100000000 011234566778888887 777777777776654 8999999877 5566777777788
Q ss_pred CCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC---CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccc
Q 004753 526 GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY---AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI 602 (732)
Q Consensus 526 Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~---~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~i 602 (732)
+. .++|.|.|.++ ..+....|..||+++-|+.+ +.|.+++|||++|+|||+........ .+..-|-.+++
T Consensus 241 ~~-~~~V~~~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~-----~i~~~~~~g~~ 313 (357)
T cd03795 241 GL-LDRVRFLGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS-----YVNLHGVTGLV 313 (357)
T ss_pred CC-cceEEEcCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh-----HHhhCCCceEE
Confidence 88 58999999998 67888999999999988753 55889999999999999854321111 11112444555
Q ss_pred c--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 004753 603 A--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 645 (732)
Q Consensus 603 a--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~ 645 (732)
. .|.+++++....+.+|++.++.+++..++.... .|+.+.+
T Consensus 314 ~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~ 356 (357)
T cd03795 314 VPPGDPAALAEAIRRLLEDPELRERLGEAARERAEE--EFTADRM 356 (357)
T ss_pred eCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--hcchHhh
Confidence 4 589999999999999999999999999887654 3666554
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.41 E-value=3e-11 Score=117.49 Aligned_cols=184 Identities=22% Similarity=0.243 Sum_probs=165.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHH
Q 004753 15 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 94 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 94 (732)
..+...+...+-+....+|++..+ .+++..+...|+-+.+..+..++....|.+...... +|......|++.
T Consensus 46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~-------~gk~~~~~g~~~ 117 (257)
T COG5010 46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA-------QGKNQIRNGNFG 117 (257)
T ss_pred HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH-------HHHHHHHhcchH
Confidence 334445666677777889999999 999999999999999999999999888888755443 455555677999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 95 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 95 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
+|+..++++....|++.++|..+|.+|.+.|++++|...|.+++++.|+++.+..|+|..+.-.|+++.|..++..+...
T Consensus 118 ~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 118 EAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 175 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 206 (732)
Q Consensus 175 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 206 (732)
.+.+..+..+++.+...+|++++|.+...+-+
T Consensus 198 ~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 198 PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 88899999999999999999999988766543
No 126
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.40 E-value=3.5e-11 Score=128.87 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=128.1
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
+++.++|+.++++ .|..+.+++++..+.+..|+.+|+++|.+......... .+...+. .++|.|.|. ..+.
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~---~~~~~~~-~~~v~~~g~---~~~~ 257 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL---EIEKLGL-EGRVEFLGF---RDDV 257 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH---HHHhcCC-cceEEEeec---cccH
Confidence 4566788888876 88899999999998888899999999877432222111 3556666 578999998 3567
Q ss_pred HHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHH
Q 004753 545 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVT 621 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~ 621 (732)
...|+.+|+++-|+.+ +.+++++|||++|+|||+........ ++.. |-.+++. .|.+++++....+..|++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~-----~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE-----AVID-GVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchh-----hhhc-CcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 8888999999999887 55889999999999999955442222 2221 4445554 478999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 004753 622 ALANLRMSLRDLMSKSPVCDGQNFALGLE 650 (732)
Q Consensus 622 ~~~~~r~~lr~~~~~~~~~~~~~~~~~~e 650 (732)
.+..+.+..++.... .|+.+.++..++
T Consensus 332 ~~~~~~~~~~~~~~~--~~s~~~~~~~~~ 358 (359)
T cd03808 332 LRARMGQAARKRAEE--EFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHH--hcCHHHHHHHhh
Confidence 999998888877543 378888888775
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.6e-10 Score=111.26 Aligned_cols=204 Identities=17% Similarity=0.103 Sum_probs=174.7
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh
Q 004753 15 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 88 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 88 (732)
..+.++-+++....+.. .++....+-....+....|+.+-|..++++.....|+........|. .+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam-------~lE 97 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM-------LLE 97 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH-------HHH
Confidence 34667777777776653 34455667777888889999999999999999988988755444333 344
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 89 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 168 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 168 (732)
..|++++|+++|+..++.+|.+..++...-.+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|+|++|.-++
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 46799999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004753 169 QMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 225 (732)
Q Consensus 169 ~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~ 225 (732)
++.+-+.|.++..+..+|.+++.+| +++-|.++|.++++++|.+...++.+-.+...
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 9999999999999999999988876 57789999999999999888777776555443
No 128
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.40 E-value=3.1e-12 Score=137.51 Aligned_cols=259 Identities=17% Similarity=0.093 Sum_probs=162.7
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCchh-hhccCCCCeEEecccCCCCC-----CCCCccEEEecCCCCCcCcccCC--c
Q 004753 367 KKVAAMVREDKIDILVELTGHTANNKLG-MMACQPAPVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETKQKH--V 438 (732)
Q Consensus 367 ~~~~~~i~~d~~Dilvdl~g~t~~~~~~-~~a~r~Apvq~~~~g~p~t~-----g~~~~Dy~~~d~~~~p~~~~~~~--~ 438 (732)
..+.+.|...++||++-......+..+. .......|+-++..++.... .....|.+++-.-..-....... .
T Consensus 86 ~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 165 (359)
T cd03823 86 AEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDRYVANGLFA 165 (359)
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHHHHHcCCCc
Confidence 4567788899999997544322111111 11223357777665532111 11122555542210000001111 2
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHH
Q 004753 439 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 516 (732)
Q Consensus 439 E~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~ 516 (732)
+++..+|+.. ...... +... ..+++.++|+.++++ .|..+.+++++..+.. |+.+|+++|.+.. ..
T Consensus 166 ~~~~vi~n~~-~~~~~~---~~~~--~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~----~~ 233 (359)
T cd03823 166 EKISVIRNGI-DLDRAK---RPRR--APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLE----LE 233 (359)
T ss_pred cceEEecCCc-Chhhcc---cccc--CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchh----hh
Confidence 5666666531 111110 1111 245667788888877 7888888898888776 8999999987632 22
Q ss_pred HHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC--CCcccHHHhhhcCCCeeecCCCcccccchhHHhh
Q 004753 517 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 594 (732)
Q Consensus 517 ~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~ 594 (732)
...... +. .++|.|.|.++ .++....|..+|+++-|+.+ +.+.+++|||++|+|||+........ ++.
T Consensus 234 ~~~~~~---~~-~~~v~~~g~~~-~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e-----~i~ 303 (359)
T cd03823 234 EESYEL---EG-DPRVEFLGAYP-QEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMAE-----LVR 303 (359)
T ss_pred HHHHhh---cC-CCeEEEeCCCC-HHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHHH-----Hhc
Confidence 222111 44 47899999987 68999999999999999863 66889999999999999855432221 122
Q ss_pred hcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 595 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 595 ~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
-|..+++. .|.+++++....+.+|++.+..+++..++... .+.+++.++++|+
T Consensus 304 -~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 358 (359)
T cd03823 304 -DGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRS------IEDQAEEYLKLYR 358 (359)
T ss_pred -CCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhh------HHHHHHHHHHHhh
Confidence 23344444 45799999999999999999999998887643 2788888888885
No 129
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.40 E-value=9.4e-11 Score=138.10 Aligned_cols=255 Identities=14% Similarity=0.088 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------------CHHHHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPM------------------------------------YAEAYCNMGVIYK 47 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------------------------~~~a~~~lg~~~~ 47 (732)
+|..+...|.+.|++++|+++|+++.+.... +..++..+...|.
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 5778888999999999999999998764321 1223445566677
Q ss_pred HCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 004753 48 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK 126 (732)
Q Consensus 48 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 126 (732)
+.|++++|.+.|++... .+.. +|..+...|...|++++|++.|++..+.. .-+...+..+...+.+.|+
T Consensus 271 k~g~~~~A~~vf~~m~~---~~~v-------t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 271 KCGDIEDARCVFDGMPE---KTTV-------AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HCCCHHHHHHHHHhCCC---CChh-------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 77777777777765532 2222 23334444555667777777777765542 2245567777777777777
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 127 FDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 205 (732)
Q Consensus 127 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 205 (732)
+++|.+.+...++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|+.+...|.+.|+.++|++.|+++
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777664 44556677777777777777777777776543 24556777777777777777777777777
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHH
Q 004753 206 IAAN-PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 271 (732)
Q Consensus 206 l~~~-p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~ 271 (732)
.+.. .-+..++..+...+.+.|+.++|.++|+...+..+-.++....-.+...+...|..+++.+.
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 6542 22355566667777777777777777777765433323322233344556666766666554
No 130
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.39 E-value=1.2e-11 Score=133.92 Aligned_cols=166 Identities=19% Similarity=0.144 Sum_probs=126.7
Q ss_pred cEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 471 ITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 471 ~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
+.|+..... .|..+.++++|..+.+. .|+.+++++|.+.. ... .++ .++|.|+|++++.++...+
T Consensus 194 i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~----~~~-------~~~-~~~v~~~g~~~~~~~~~~~ 261 (365)
T cd03825 194 ILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP----EIP-------PDL-PFPVHYLGSLNDDESLALI 261 (365)
T ss_pred EEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch----hhh-------ccC-CCceEecCCcCCHHHHHHH
Confidence 345555544 79999999999877665 68999999887621 111 145 4789999998866677888
Q ss_pred cccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHH
Q 004753 548 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALA 624 (732)
Q Consensus 548 ~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~ 624 (732)
|+.+|+++-|+-+ +.|.+++|||++|+|||+.....+..-+. -+..+++. .|.+++++...++.+|++.+.
T Consensus 262 ~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~------~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~ 335 (365)
T cd03825 262 YSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVD------HGVTGYLAKPGDPEDLAEGIEWLLADPDERE 335 (365)
T ss_pred HHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhhee------CCCceEEeCCCCHHHHHHHHHHHHhCHHHHH
Confidence 9999999999977 66999999999999999865443333222 13344444 378999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 625 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 625 ~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
++++..++.... -|+.+.+++.++++|+++
T Consensus 336 ~~~~~~~~~~~~--~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 336 ELGEAARELAEN--EFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHH--hcCHHHHHHHHHHHHhhC
Confidence 999998876543 489999999999999763
No 131
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.3e-12 Score=129.42 Aligned_cols=230 Identities=20% Similarity=0.197 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC-----
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----- 110 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 110 (732)
+.-....|..++...+|.+|++.|..|++..|++...|.+.+..+..++ ++++|.-..++.++++|..
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~-------~~~~a~~dar~~~r~kd~~~k~~~ 121 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLG-------RFEEALGDARQSVRLKDGFSKGQL 121 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHH-------hHhhcccchhhheecCCCcccccc
Confidence 3456677889999999999999999999999999888888888887766 3444443333333333322
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004753 111 -----------------------------------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 143 (732)
Q Consensus 111 -----------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 143 (732)
..+-..-+.++...|++++|...--..+++++.
T Consensus 122 r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~ 201 (486)
T KOG0550|consen 122 REGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT 201 (486)
T ss_pred chhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc
Confidence 223344566777778888888888888889999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
+.++++..|.+++..++.+.|+.+|++++.++|+... .+..-|.-.++.|++.+|.+.|..+|.++|+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 9999999999999999999999999999999997644 4556688888999999999999999999997
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHH
Q 004753 212 Y----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 212 ~----~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
+ +..|.+.+.+...+|+.++|+.-.+.+++++|....++..+ +.+|+..++.+++.+.+..
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r--a~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR--ANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 6 56789999999999999999999999999999888776554 4555555555655554443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=1.1e-11 Score=113.90 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 132 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 132 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
+.+++++..+|++....+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 212 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 212 ~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
++..++.+|.+|...|++++|+..|+++++++|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888888888888888888888888888877654
No 133
>PLN03077 Protein ECB2; Provisional
Probab=99.39 E-value=1.3e-10 Score=140.34 Aligned_cols=262 Identities=15% Similarity=0.088 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT-- 81 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-- 81 (732)
++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|++.+...+.+...+..+..++.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh
Confidence 456677788889999999999987643 345678888889999999999999999987643333323332222222
Q ss_pred --------------------------HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 82 --------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 135 (732)
Q Consensus 82 --------------------------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (732)
.+-..|.+.|++++|.+.|+.. +.+..+|..+...|...|+.++|+++|+
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 2335677889999999999886 5678899999999999999999999999
Q ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 136 LAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 136 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
+..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...|+
T Consensus 579 ~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 579 RMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 98874 454 45566666788999999999999999885432 23568899999999999999999999986 24454
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 212 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 212 ~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
..+|..|-..+...|+.+.+....+++++++|++... ..+++..|...|+.+++.+..+...+
T Consensus 657 -~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 657 -PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 6778888888899999999999999999999987655 34577788889998887776655443
No 134
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.38 E-value=7.2e-12 Score=135.04 Aligned_cols=165 Identities=18% Similarity=0.132 Sum_probs=129.6
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
++.++|+.++++ .|..+.+++++.++... |+.+|+++|.+ +....++ +. .++|.|.|.++ .++..
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~----~~~~~~~------~~-~~~v~~~g~~~-~~~~~ 261 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDG----PARARLE------AR-YPNVHFLGFLD-GEELA 261 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCC----chHHHHh------cc-CCcEEEEeccC-HHHHH
Confidence 456678888876 78889999999999888 99999999976 2333332 33 47899999876 67888
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHH
Q 004753 546 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTA 622 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~ 622 (732)
..|..+|++|.|+.. +.|++++|||++|+|||+.....+...+. . +-.++++ .+.+++++...++..|++.
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~-----~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIVT-----D-GENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhhc-----C-CcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 999999999999877 66899999999999999977554433222 1 3344444 5677799999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 623 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 623 ~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
+.++.+..++.. .-|+++.+++.+++.|+
T Consensus 336 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 336 RRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 999999888765 33899999999998873
No 135
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.38 E-value=3.2e-11 Score=128.93 Aligned_cols=301 Identities=11% Similarity=-0.024 Sum_probs=171.2
Q ss_pred cChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccC------CCHHHHHHHHHhCCCcEEEe
Q 004753 310 THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG------IDEKKVAAMVREDKIDILVE 383 (732)
Q Consensus 310 ~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~d~~Dilvd 383 (732)
...+..++..+...+.+.+.+|.+++......... ...... ...+..... .....+.+.|...++||+.-
T Consensus 18 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~ 93 (335)
T cd03802 18 YGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP--LVPVVP--EPLRLDAPGRDRAEAEALALAERALAAGDFDIVHN 93 (335)
T ss_pred cCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc--eeeccC--CCcccccchhhHhhHHHHHHHHHHHhcCCCCEEEe
Confidence 34455556666676767788998887654322111 111100 011111000 01235677888899999964
Q ss_pred CCCCCCCCchhhhccCCCCeEEecccCCCCCCC------CCccEEEecCCCCCcCcccCCccceEEcCCCccccCCCCCC
Q 004753 384 LTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEA 457 (732)
Q Consensus 384 l~g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g~------~~~Dy~~~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~ 457 (732)
.+..... .....+-.|+.++.++....... ...|.+++-.-........ . .++..+|+.. .... -.
T Consensus 94 ~~~~~~~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~-~~~~vi~ngv-d~~~--~~ 165 (335)
T cd03802 94 HSLHLPL---PFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPP-L-PWVATVHNGI-DLDD--YP 165 (335)
T ss_pred cCcccch---hhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhccc-c-cccEEecCCc-Chhh--CC
Confidence 3322221 12223445888888776543211 1223333211000000001 1 4555666531 1110 00
Q ss_pred CCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcC-CCCCcEEE
Q 004753 458 GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLG-LESLRVDL 534 (732)
Q Consensus 458 ~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~G-v~~~rv~~ 534 (732)
+ .+.+..+++.++++ .|..+.++++.. .++.+|+++|.+.. ...+.....+.. + .++|.|
T Consensus 166 -~------~~~~~~~i~~~Gr~~~~Kg~~~li~~~~-----~~~~~l~i~G~~~~----~~~~~~~~~~~~~~-~~~v~~ 228 (335)
T cd03802 166 -F------RGPKGDYLLFLGRISPEKGPHLAIRAAR-----RAGIPLKLAGPVSD----PDYFYREIAPELLD-GPDIEY 228 (335)
T ss_pred -C------CCCCCCEEEEEEeeccccCHHHHHHHHH-----hcCCeEEEEeCCCC----HHHHHHHHHHhccc-CCcEEE
Confidence 0 11223345566665 777777666533 35789999987732 233333333333 4 489999
Q ss_pred cCCcCCcHHHHHhcccccEEecCCCC--CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHH
Q 004753 535 LPLILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQL 612 (732)
Q Consensus 535 ~~~~~~~~~~~~~~~~~Di~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~ 612 (732)
.|.++ ..+....|+.+|+++-|+.+ +.|.+++|||++|+|||+........-+. -|..++++.+.+++++.
T Consensus 229 ~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~------~~~~g~l~~~~~~l~~~ 301 (335)
T cd03802 229 LGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVE------DGVTGFLVDSVEELAAA 301 (335)
T ss_pred eCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhhee------CCCcEEEeCCHHHHHHH
Confidence 99987 56788899999999998864 66899999999999999865443333222 25567777788888888
Q ss_pred HHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 613 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 613 a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
...+..+.. +..++... ..|+.+.++.++++.|+
T Consensus 302 l~~l~~~~~------~~~~~~~~--~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 302 VARADRLDR------AACRRRAE--RRFSAARMVDDYLALYR 335 (335)
T ss_pred HHHHhccHH------HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 877765442 22233322 34899999999999884
No 136
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.38 E-value=1.5e-11 Score=133.68 Aligned_cols=218 Identities=21% Similarity=0.212 Sum_probs=186.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhh
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 85 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 85 (732)
..++..+...|-..+|+.+|++ ...|-....||...|+..+|.....+-++..|+ + ..|..+|
T Consensus 402 ~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~-------~lyc~LG- 464 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P-------RLYCLLG- 464 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c-------hhHHHhh-
Confidence 4678899999999999999998 456778889999999999999999999984443 3 2344455
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 86 KVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 164 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 164 (732)
|+..=-.+|+++.++.. .+..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus 465 ------Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 465 ------DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ------hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 33333444555554432 24557777888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 165 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 165 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
.++|..++.+.|++..+|+|++.+|.+.++..+|...++++++.+-++..+|-|.-.+..+.|.+++|++.|.+.+.+..
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999988754
Q ss_pred CC
Q 004753 245 DS 246 (732)
Q Consensus 245 ~~ 246 (732)
+.
T Consensus 619 ~~ 620 (777)
T KOG1128|consen 619 KY 620 (777)
T ss_pred hc
Confidence 43
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.37 E-value=3.2e-11 Score=134.44 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH------------------
Q 004753 17 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI------------------ 78 (732)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~------------------ 78 (732)
+...|...|-+++++++..+.++..||.+|....+...|.++|.+|.++++.+.++....+.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 35555555555666665555556666666555555555666666665555554443333222
Q ss_pred -----------HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 004753 79 -----------ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 147 (732)
Q Consensus 79 -----------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 147 (732)
.+...|-.|.+.++..+|+..|+.++..+|.+.+.|..+|.+|...|.+..|++.|.++..++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 233467778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 148 CNNLGVIYKDRDNLDKAVECYQMALSIK 175 (732)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 175 (732)
.+..+.+....|+|.+|+..+...+...
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999988888776653
No 138
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.36 E-value=1.8e-11 Score=132.18 Aligned_cols=263 Identities=17% Similarity=0.095 Sum_probs=167.3
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCchhhhccCCCCeEEecccCC-----CCCC--------------CCCccEEEecCCC
Q 004753 368 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP-----NTTG--------------LPTIDYRITDSLA 428 (732)
Q Consensus 368 ~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~p-----~t~g--------------~~~~Dy~~~d~~~ 428 (732)
.....+...++||++-....... +.....|+.+...+.. .... +...|.+++-.-.
T Consensus 76 ~~~~~~~~~~~Dii~~~~~~~~~-----~~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~ 150 (365)
T cd03809 76 GDRLLLLLLGLDLLHSPHNTAPL-----LRLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEA 150 (365)
T ss_pred HHHHHhhhcCCCeeeecccccCc-----ccCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHH
Confidence 34555666889999755443322 1234557776665532 1111 1124666653211
Q ss_pred CCcCcccCC---ccceEEcCCCccccCCCCCCCCC-CCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEE
Q 004753 429 DPPETKQKH---VEELIRLPECFLCYTPSPEAGPV-CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 502 (732)
Q Consensus 429 ~p~~~~~~~---~E~l~~lp~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l 502 (732)
.-......+ .+++..+|+..- .......... ........+.++++.++++ .|..+.+++++..+....|+.+|
T Consensus 151 ~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l 229 (365)
T cd03809 151 TKRDLLRYLGVPPDKIVVIPLGVD-PRFRPPPAEAEVLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKL 229 (365)
T ss_pred HHHHHHHHhCcCHHHEEeeccccC-ccccCCCchHHHHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCE
Confidence 111112223 466777776321 1111000000 0011233455677777777 78889999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCC
Q 004753 503 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAG 581 (732)
Q Consensus 503 ~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g 581 (732)
++.|.+... .......+++.+. .++|.|.|.++ ..+....+..+|++|-|+-+ +.+.+++|||++|+|||+...
T Consensus 230 ~i~G~~~~~---~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 304 (365)
T cd03809 230 VIVGKRGWL---NEELLARLRELGL-GDRVRFLGYVS-DEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNI 304 (365)
T ss_pred EEecCCccc---cHHHHHHHHHcCC-CCeEEECCCCC-hhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCC
Confidence 999865322 2223333366777 58999999987 57889999999999999877 558899999999999999655
Q ss_pred CcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 004753 582 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 650 (732)
Q Consensus 582 ~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e 650 (732)
..+...++ ..|. -+...|.+++++...++.+|++.+..+++..++... -|+++.+++.+.
T Consensus 305 ~~~~e~~~-----~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~---~~sw~~~~~~~~ 364 (365)
T cd03809 305 SSLPEVAG-----DAAL-YFDPLDPEALAAAIERLLEDPALREELRERGLARAK---RFSWEKTARRTL 364 (365)
T ss_pred CCccceec-----Ccee-eeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHh
Confidence 43333221 1111 123568999999999999999999999988885432 378988887764
No 139
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.36 E-value=1.1e-11 Score=124.41 Aligned_cols=191 Identities=20% Similarity=0.242 Sum_probs=142.4
Q ss_pred cCCccceEEcCCCc--cccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC
Q 004753 435 QKHVEELIRLPECF--LCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC 510 (732)
Q Consensus 435 ~~~~E~l~~lp~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~ 510 (732)
..-.+++..+|+.. -.|.|.+...+ .++.++....+|+ .|..+-++++-.++.++.|+.++++.|+|
T Consensus 165 ~L~p~kvsvIPnAv~~~~f~P~~~~~~-------S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDG-- 235 (426)
T KOG1111|consen 165 ALAPAKVSVIPNAVVTHTFTPDAADKP-------SADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDG-- 235 (426)
T ss_pred ccCHhHeeeccceeeccccccCccccC-------CCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCC--
Confidence 34457888888742 23555322211 2333666677788 89999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccch
Q 004753 511 CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 511 ~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
+-+..+++..+++-+ .+||.++|.++ +.+....|...||||.|+-. ..|++.+||+.||+|||+ .|+|
T Consensus 236 --Pk~i~lee~lEk~~l-~~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVs-------TrVG 304 (426)
T KOG1111|consen 236 --PKRIDLEEMLEKLFL-QDRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVS-------TRVG 304 (426)
T ss_pred --cccchHHHHHHHhhc-cCceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEE-------eecC
Confidence 777778888888888 59999999998 78899999999999999987 779999999999999998 8899
Q ss_pred hHHhhhcCCCccccCC--------HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 590 VSLLTKVGLKHLIAKN--------EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 590 ~s~l~~~gl~~~ia~~--------~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
|+||.+..| +++.++....-.+.. ...-....+++ ...+++++.++..|..|.++-
T Consensus 305 -------GIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~---~~~p~~~h~~v--~~~y~w~dVa~rTekvy~r~~ 368 (426)
T KOG1111|consen 305 -------GIPEVLPEDMITLGEPGPDDLVGAVEKAITKL---RTLPLEFHDRV--KKMYSWKDVAERTEKVYDRAA 368 (426)
T ss_pred -------CccccCCccceeccCCChHHHHHHHHHHHHHh---ccCchhHHHHH--HHhccHHHHHHHHHHHHHHHh
Confidence 999877544 444443333222211 11112223333 346899999999999998764
No 140
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=3.1e-09 Score=108.86 Aligned_cols=259 Identities=14% Similarity=0.039 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
...+-|..-+..|+|.+|++...+.-+..+.-.-++..-+....+.|+++.|-.++.++-+..++... . .+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l-~-----v~ltr 159 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL-A-----VELTR 159 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH-H-----HHHHH
Confidence 44566778888999999999999988888887888888899999999999999999999998665432 1 23344
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---------------------- 141 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------- 141 (732)
+.+....|++..|.....++++..|.++.+......+|...|++.+...++.+.-+..
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 5556668899999999999999999999999999999999999998888877654431
Q ss_pred --C------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 142 --P------------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 201 (732)
Q Consensus 142 --p------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 201 (732)
+ +++.....++.-+...|+.++|.+..+++++..-+.. ....++ ...-++.+.=++.
T Consensus 240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~ 316 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKA 316 (400)
T ss_pred hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHH
Confidence 1 1244555667778889999999999999988754433 222222 3456888888899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHH
Q 004753 202 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 202 l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
.++.++..|+++..+..||.+|.+.+.+.+|.++|+.+++..|+... ...++..+...|+..++-+..++
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~---~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD---YAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh---HHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887543 34577888888888776665544
No 141
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=5.5e-11 Score=136.22 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=128.5
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 158 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (732)
++..++.+....|.+++|...++.+++..|++..+..+++.++.+.+++++|+..+++++..+|+++.+++.+|.++.+.
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence 44455555666779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 159 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 159 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
|++++|+.+|++++..+|+++.++.++|.++...|+.++|...|+++++...+-...+.
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 99999999999999999999999999999999999999999999999998765555443
No 142
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.35 E-value=4.3e-11 Score=129.41 Aligned_cols=165 Identities=11% Similarity=0.141 Sum_probs=120.6
Q ss_pred EEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc
Q 004753 472 TFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 549 (732)
Q Consensus 472 ~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~ 549 (732)
.+..++++ .|....+++++.++.. +.+|+++|.+.......+.+.+ ..+. .++|.|.|.++ ..+....|.
T Consensus 195 ~i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~---~~~~-~~~V~~~g~~~-~~~~~~~~~ 266 (363)
T cd04955 195 YYLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKE---KAAA-DPRIIFVGPIY-DQELLELLR 266 (363)
T ss_pred EEEEEecccccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHH---HhCC-CCcEEEccccC-hHHHHHHHH
Confidence 35566766 7888888888876543 7899999987333333333322 5666 58999999988 578889999
Q ss_pred cccEEecCCCC--CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHH
Q 004753 550 LMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 627 (732)
Q Consensus 550 ~~Di~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 627 (732)
.+|+++-|+.. +.+.+++|||++|+|||+........-+ +-.+++....+.+.+...+|.+|++.+..++
T Consensus 267 ~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~--------~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~ 338 (363)
T cd04955 267 YAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVL--------GDKAIYFKVGDDLASLLEELEADPEEVSAMA 338 (363)
T ss_pred hCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccceee--------cCCeeEecCchHHHHHHHHHHhCHHHHHHHH
Confidence 99999888866 4578999999999999985432211111 1133444444558899999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 628 MSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 628 ~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
+..++...+ .|+++.++.++++.|+
T Consensus 339 ~~~~~~~~~--~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 339 KAARERIRE--KYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 888877543 4899999999999884
No 143
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.35 E-value=2.3e-11 Score=133.59 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=123.3
Q ss_pred CCCcEEEecCCC--CcCCHHHH----HHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 004753 468 NGFITFGSFNNL--AKITPKVL----QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 541 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~----~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~ 541 (732)
.+..+++.++++ .|..+.++ ++|..+.+..|+.+|+++|.+. . .. +++++. .++|.|.|.++
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~----~-~~----~~~l~~-~~~V~~~G~v~-- 289 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP----S-PA----VRALAA-LPGVTVTGSVA-- 289 (397)
T ss_pred CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC----h-HH----HHHhcc-CCCeEEeeecC--
Confidence 345567777776 67666665 6777888889999999999762 1 12 233444 46799999976
Q ss_pred HHHHHhcccccEEecCCCC--CCcccHHHhhhcCCCeeecCCCcccccchhHHhh-hcCCCccccCCHHHHHHHHHHhhc
Q 004753 542 HDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIAKNEDEYVQLALQLAS 618 (732)
Q Consensus 542 ~~~~~~~~~~Di~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~-~~gl~~~ia~~~~~y~~~a~~l~~ 618 (732)
+....|..+||++-|+.+ +.+++++|||+||+|||+... +..-+. .-|..-+++.|.+++++...+|.+
T Consensus 290 -~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~-------~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~ 361 (397)
T TIGR03087 290 -DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPE-------AAEGIDALPGAELLVAADPADFAAAILALLA 361 (397)
T ss_pred -CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCc-------ccccccccCCcceEeCCCHHHHHHHHHHHHc
Confidence 456778889999999864 336689999999999999542 111111 113333566899999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 619 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 619 d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
|++.++.+++..|+.+.. .|+++..+..++++|+
T Consensus 362 ~~~~~~~~~~~ar~~v~~--~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 362 NPAEREELGQAARRRVLQ--HYHWPRNLARLDALLE 395 (397)
T ss_pred CHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhc
Confidence 999999999999987654 3899999999999885
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=99.34 E-value=3.8e-11 Score=137.91 Aligned_cols=181 Identities=10% Similarity=-0.019 Sum_probs=128.8
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+.++||+++|+ .|..+.+++++.+++. ++.+|+|+|.|. .....+.++....+.|+ .+||.|.+... ...-..
T Consensus 778 d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp-~~~~e~eL~~La~~l~l-~drV~FlG~~d-e~lah~ 852 (977)
T PLN02939 778 SQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSP-VPHIQREFEGIADQFQS-NNNIRLILKYD-EALSHS 852 (977)
T ss_pred cceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCC-cHHHHHHHHHHHHHcCC-CCeEEEEeccC-HHHHHH
Confidence 56899999998 8999999999998885 588999998762 12345778888888998 58999998864 233346
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccch---hHHhhhcCCCcccc--CCHHHHHHHHHHhh---
Q 004753 547 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG---VSLLTKVGLKHLIA--KNEDEYVQLALQLA--- 617 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~---~s~l~~~gl~~~ia--~~~~~y~~~a~~l~--- 617 (732)
.|..+|+||-|+.| +.|.|.+|||++|+|+|+..-.....-|. ......-|-++++. .|++++.....++.
T Consensus 853 IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~ 932 (977)
T PLN02939 853 IYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYY 932 (977)
T ss_pred HHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHh
Confidence 88999999999999 66999999999998877632111111000 00000012334443 47777776555543
Q ss_pred -cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 004753 618 -SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 659 (732)
Q Consensus 618 -~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 659 (732)
.|++.+.++++.. +. .-|+++.++..++++|+++..+
T Consensus 933 ~~dpe~~~~L~~~a---m~--~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 933 KRKPEVWKQLVQKD---MN--IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred ccCHHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHHHHHh
Confidence 4888888877543 22 3489999999999999999864
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.34 E-value=3.3e-11 Score=110.75 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=114.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 98 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
+.+++++..+|++..+.+.+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.6e-11 Score=121.39 Aligned_cols=118 Identities=30% Similarity=0.479 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 224 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~ 224 (732)
++-+..-|.-+.+.++|++|+..|.+||+++|.++..|.+.+.+|.++|+++.|++-++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34456678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhcc
Q 004753 225 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 262 (732)
Q Consensus 225 ~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~ 262 (732)
.+|++++|++.|+++|+++|++.....++-.+..-+.+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999877776555544433
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=8.3e-11 Score=131.23 Aligned_cols=253 Identities=19% Similarity=0.091 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY-----KNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
.+-...........+.++.-++.+++...-+-....+..+..+ ...++...|...|-+++++++....++..++.
T Consensus 421 tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~ 500 (1238)
T KOG1127|consen 421 TLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQ 500 (1238)
T ss_pred HHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 3444455555566666777777766665554333333222222 22445899999999999999999999999999
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYK 156 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 156 (732)
.|...- +...|.++|++|.++++.+..+....+..|.+..++++|......+-+..|.. ...|..+|..|.
T Consensus 501 iYrd~~-------Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 501 IYRDSD-------DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHH-------HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 988754 78899999999999999999999999999999999999999977777766643 345667999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
+.++..+|+..|+.++..+|++..+|..+|.+|...|++..|++.|.++..++|.+....+..+.+...+|+|++|+..+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC-----ChhHHHHHHHHHhhhccC
Q 004753 237 EQCLKIDPD-----SRNAGQNRLLAMNYINEG 263 (732)
Q Consensus 237 ~~al~l~p~-----~~~a~~~~~la~~~~~~~ 263 (732)
...+..... +..+.....++..+...|
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g 685 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITG 685 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 887765332 233444444444444443
No 148
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.32 E-value=1.8e-11 Score=134.65 Aligned_cols=167 Identities=13% Similarity=0.160 Sum_probs=128.6
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE--EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
++.++|++++++ .|..+.+++++.++....|+.. ++++|+| +..+.+++.++..+. .++|.|+|.++ .++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g----~~~~~l~~~~~~~~~-~~~V~f~G~v~-~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG----PLEDTLKELAESKPE-NISVNFTGELS-NSE 301 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc----hHHHHHHHHHHhcCC-CceEEEecCCC-hHH
Confidence 456778888887 7889999999999999888654 4566766 566778888877777 58999999998 578
Q ss_pred HHHhccc--ccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchh-HHhhhcCCCcccc---CCHHHHHHHHHHh
Q 004753 544 HMQAYSL--MDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA---KNEDEYVQLALQL 616 (732)
Q Consensus 544 ~~~~~~~--~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-s~l~~~gl~~~ia---~~~~~y~~~a~~l 616 (732)
....|.. +|+++-|+.+ +.+.+++|||++|+|||+.. +|+ .-+..-|-++++. .|.+++++...++
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~-------vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~~l 374 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN-------VGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKF 374 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC-------CCCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHH
Confidence 8888854 8999999988 55889999999999999833 331 1111123334433 3789999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004753 617 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 649 (732)
Q Consensus 617 ~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~ 649 (732)
..|++.+..+++..|+..... |+.+...+.+
T Consensus 375 l~~~~~~~~m~~~ar~~~~~~--f~~~~~~~~~ 405 (407)
T cd04946 375 IDNEEEYQTMREKAREKWEEN--FNASKNYREF 405 (407)
T ss_pred HhCHHHHHHHHHHHHHHHHHH--cCHHHhHHHh
Confidence 999999999999999887543 7887766554
No 149
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.31 E-value=9.1e-11 Score=128.68 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=136.1
Q ss_pred CCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC--HHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 004753 466 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLILLN 541 (732)
Q Consensus 466 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~--~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~ 541 (732)
.+.+.++|+.++++ .|..+.+++++.++....|+.+|+++|++... ......+....+..|+ .++|.|.|.++ .
T Consensus 216 ~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~-~ 293 (398)
T cd03800 216 RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGV-IDRVDFPGRVS-R 293 (398)
T ss_pred cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCC-CceEEEeccCC-H
Confidence 34566788898987 78899999999999988999999999876432 1223456677778888 48999999987 6
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhc
Q 004753 542 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 618 (732)
Q Consensus 542 ~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~ 618 (732)
.+....+..+|++|-|+-+ +.|.+++|||++|+|||+-....... ++.. +-.+++. .|.+++++...++.+
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e-----~i~~-~~~g~~~~~~~~~~l~~~i~~l~~ 367 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRD-----IVVD-GVTGLLVDPRDPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHH-----HccC-CCCeEEeCCCCHHHHHHHHHHHHh
Confidence 7889999999999999877 55889999999999999855332211 2222 3334554 479999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 004753 619 DVTALANLRMSLRDLMSKSPVCDGQNFALGLE 650 (732)
Q Consensus 619 d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e 650 (732)
|++.+..+++..++.... .|+++.++..++
T Consensus 368 ~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~ 397 (398)
T cd03800 368 DPALRRRLSRAGLRRARA--RYTWERVAARLL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHH--hCCHHHHHHHHh
Confidence 999999999988876533 378888888765
No 150
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.31 E-value=4e-11 Score=139.85 Aligned_cols=181 Identities=14% Similarity=0.058 Sum_probs=140.0
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHHHhH--cCCcEEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEc
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARILCA--VPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLL 535 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~l~~~~~~-------~~~~~~~~~~~~~~~Gv~~~rv~~~ 535 (732)
+.+.+++.+++|+ .|....+++++..+... .|+.++ ++|.+-. ..+....+++.+.+.|+ .++|.|.
T Consensus 476 ~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL-~g~V~Fl 553 (1050)
T TIGR02468 476 NPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL-YGQVAYP 553 (1050)
T ss_pred cCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCC-CCeEEec
Confidence 4556678889988 89999999999988653 355553 4454311 11335678888999999 5999999
Q ss_pred CCcCCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchh-HHhhhcCCCcccc--CCHH
Q 004753 536 PLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNED 607 (732)
Q Consensus 536 ~~~~~~~~~~~~~~~~----Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-s~l~~~gl~~~ia--~~~~ 607 (732)
|.++ +.+...+|+.+ |||+-|+.+ +.|.|++|||+||+|||+. ++|. .-+...|.+++++ .|.+
T Consensus 554 G~v~-~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVAS-------dvGG~~EII~~g~nGlLVdP~D~e 625 (1050)
T TIGR02468 554 KHHK-QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVAT-------KNGGPVDIHRVLDNGLLVDPHDQQ 625 (1050)
T ss_pred CCCC-HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEe-------CCCCcHHHhccCCcEEEECCCCHH
Confidence 9876 67888888877 699999988 6699999999999999984 3331 1122225556554 4899
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 004753 608 EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 660 (732)
Q Consensus 608 ~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 660 (732)
++.+...++.+|++.++++++..+++.. .|+++..++.+.+.|..+-.+.
T Consensus 626 aLA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 626 AIADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988763 3999999999999999876444
No 151
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.30 E-value=4.7e-11 Score=136.60 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=132.8
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----C-H--HHHHHHHHHHHHcCCCCCcEEEcC
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----C-D--SVRHRFLSTLEQLGLESLRVDLLP 536 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----~-~--~~~~~~~~~~~~~Gv~~~rv~~~~ 536 (732)
+.+.+++++++|+ .|....+++++.++-...+++.|+|+|++.. + + ...+++.+.+.+.|+ .++|.|+|
T Consensus 547 d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL-~g~V~flG 625 (784)
T TIGR02470 547 DPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL-HGQIRWIG 625 (784)
T ss_pred CCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC-CCeEEEcc
Confidence 3456678899988 8999999999988755567899999987532 1 1 134678888999999 59999999
Q ss_pred CcCCcHH---HHHhcc-cccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchh-HHhhhcCCCcccc--CCHHH
Q 004753 537 LILLNHD---HMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDE 608 (732)
Q Consensus 537 ~~~~~~~---~~~~~~-~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-s~l~~~gl~~~ia--~~~~~ 608 (732)
...+..+ ....+. .+|||+-|+.| +.|.|.+|||+||+|||+ +++|. .-...-|.++++. .|.++
T Consensus 626 ~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-------T~~GG~~EiV~dg~tGfLVdp~D~ea 698 (784)
T TIGR02470 626 AQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-------TRFGGPLEIIQDGVSGFHIDPYHGEE 698 (784)
T ss_pred CcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-------cCCCCHHHHhcCCCcEEEeCCCCHHH
Confidence 7532333 333222 46899999988 679999999999999998 44441 1111124555554 47888
Q ss_pred HHHHHHHhh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHH
Q 004753 609 YVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMW 657 (732)
Q Consensus 609 y~~~a~~l~----~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~--~~~ 657 (732)
+.+...++. +|++.+.++++..++++.. -|+++.+++.+.+... ..|
T Consensus 699 LA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~--~FSW~~~A~~ll~l~~~~~~~ 751 (784)
T TIGR02470 699 AAEKIVDFFEKCDEDPSYWQKISQGGLQRIYE--KYTWKIYSERLLTLAGIYGFW 751 (784)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhhhHh
Confidence 888877664 7999999999998887644 3899999999998875 356
No 152
>PLN02316 synthase/transferase
Probab=99.30 E-value=6.2e-11 Score=138.72 Aligned_cols=171 Identities=16% Similarity=0.073 Sum_probs=129.5
Q ss_pred CCC-CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCcEEEcCCcCC
Q 004753 465 ALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLRVDLLPLILL 540 (732)
Q Consensus 465 ~~~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~-~~rv~~~~~~~~ 540 (732)
+++ .+.+++++++|+ .|....+++++.++++ ++.+|+|+|.|- +...+..+++.+.++|+. ++||.|.+...
T Consensus 834 GL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gp-d~~~e~~l~~La~~Lg~~~~~rV~f~g~~d- 909 (1036)
T PLN02316 834 GLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAP-DPRIQNDFVNLANQLHSSHHDRARLCLTYD- 909 (1036)
T ss_pred CCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCC-CHHHHHHHHHHHHHhCccCCCeEEEEecCC-
Confidence 455 367899999999 8999999999999886 479999998762 234678888889988874 58999987643
Q ss_pred cHHHH--HhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcc----------------
Q 004753 541 NHDHM--QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL---------------- 601 (732)
Q Consensus 541 ~~~~~--~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~---------------- 601 (732)
+.+ .+|+.+||||-|+-| +.|.|.+|||++|+|+|+ +++| |++|.
T Consensus 910 --e~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d~d~~~~~~~~~g~ 973 (1036)
T PLN02316 910 --EPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFDVDHDKERAQAQGL 973 (1036)
T ss_pred --HHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhcccccccccccccccc
Confidence 332 588999999999999 669999999999987775 3444 44443
Q ss_pred -----cc--CCHHHHHHHHHHhhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 602 -----IA--KNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 602 -----ia--~~~~~y~~~a~~l~~d-~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
+. .|++++.....++..+ ++.+..+++..+..+.. -|++.+.++.++++|+++-
T Consensus 974 ~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~--dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 974 EPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQ--DWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred CCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHh
Confidence 33 2677777777776665 34455566666666643 4899999999999998763
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3.6e-11 Score=119.01 Aligned_cols=117 Identities=25% Similarity=0.335 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004753 114 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193 (732)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 193 (732)
+..-|.-+.+.++|++|+..|.+||+++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 34445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004753 194 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 230 (732)
Q Consensus 194 ~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~ 230 (732)
++++|++.|+++++++|++.....+|..+-.++++..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 6666666666666666666666666655555555444
No 154
>PLN00142 sucrose synthase
Probab=99.29 E-value=6e-11 Score=135.74 Aligned_cols=177 Identities=13% Similarity=0.013 Sum_probs=132.5
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HH---HHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DS---VRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~---~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
.+.+++++++|+ .|..+.++++++++.+..|+++|+|+|++... .. ..+++.+.+.+.|+ .++|.|+|.
T Consensus 571 ~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~~~V~flG~ 649 (815)
T PLN00142 571 RKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-KGQFRWIAA 649 (815)
T ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-CCcEEEcCC
Confidence 345578899988 79999999999988777789999999876211 11 12567788899999 599999986
Q ss_pred cCC---cHHHHHhcc-cccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccch-hHHhhhcCCCcccc--CCHHHH
Q 004753 538 ILL---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG-VSLLTKVGLKHLIA--KNEDEY 609 (732)
Q Consensus 538 ~~~---~~~~~~~~~-~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~-~s~l~~~gl~~~ia--~~~~~y 609 (732)
..+ ..+....+. .+|||+-|+.| +.|.|++|||+||+|||+. ++| ..-+..-|.+++++ .|.+++
T Consensus 650 ~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVAT-------dvGG~~EIV~dG~tG~LV~P~D~eaL 722 (815)
T PLN00142 650 QTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-------CQGGPAEIIVDGVSGFHIDPYHGDEA 722 (815)
T ss_pred cCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEc-------CCCCHHHHhcCCCcEEEeCCCCHHHH
Confidence 432 244555454 57999999988 6699999999999999983 333 11122236666664 478888
Q ss_pred HHHHHH----hhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 610 VQLALQ----LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 610 ~~~a~~----l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
.+...+ +..|++.+.++.+..++++.. .|+++.++.+++++-.
T Consensus 723 A~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e--~FSWe~~A~rll~L~~ 769 (815)
T PLN00142 723 ANKIADFFEKCKEDPSYWNKISDAGLQRIYE--CYTWKIYAERLLTLGG 769 (815)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHh
Confidence 777654 457999999999998887643 4899999999998764
No 155
>PLN03077 Protein ECB2; Provisional
Probab=99.28 E-value=1.1e-09 Score=132.14 Aligned_cols=257 Identities=13% Similarity=0.085 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH--
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEIAKNNMAI-- 78 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~-- 78 (732)
.+|..+...|.+.|++++|.+.|++... .+...|..+...|.+.|++++|++.|++..+. .|+... +..+..
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHH
Confidence 3577788888999999999999988642 34667888899999999999999999987654 354321 111111
Q ss_pred --------------------------HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 79 --------------------------ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 132 (732)
Q Consensus 79 --------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (732)
++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+.
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHH
Confidence 122233445555566666665554322 233455555555666666666666
Q ss_pred HHHHHHhcCCCCHHHH-----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 133 FYELAFHFNPHCAEAC-----------------------------------NNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 133 ~~~~al~~~p~~~~~~-----------------------------------~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
.|++.....+.+...+ ..+...|.+.|+.++|.+.|++. +.
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~ 552 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK 552 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC
Confidence 6665543211111111 12224444555555555555443 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 255 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~l 255 (732)
+...|+.+...|.+.|+.++|++.|++..+. .|+ ..++..+-..+.+.|+.++|.++|++..+..+-.++....-.+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 4455555555666666666666666655543 232 3334444445555666666666666555332222222222334
Q ss_pred HHhhhccCCcHHHHHH
Q 004753 256 AMNYINEGHDDKLFEA 271 (732)
Q Consensus 256 a~~~~~~~~~~~a~~~ 271 (732)
...+...|+.+++.+.
T Consensus 632 v~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 632 VDLLGRAGKLTEAYNF 647 (857)
T ss_pred HHHHHhCCCHHHHHHH
Confidence 4444455555554443
No 156
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=8.4e-10 Score=118.82 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=195.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+++-..|..+...|+-++|..+...++..++....+|..+|.++....+|++|+++|..|+++.|++...+..++....+
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999998777766655555
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC-----HHHHHHHHHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC-----AEACNNLGVI 154 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~la~~ 154 (732)
+ ++++.....-.+.++..|..-..|...+..+.-.|++..|.+..+...+.. |.. .........+
T Consensus 122 m-------Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 122 M-------RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred H-------HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 4 499999999999999999999999999999999999999999998887764 322 3345556677
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-
Q 004753 155 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI- 233 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~- 233 (732)
..+.|.+++|++.+.+--..--+........+.++.+++++++|...|...+..+|++...+..+-.++.+-.+.-++.
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 7888998988888776543333344456678899999999999999999999999999999988888886444444555
Q ss_pred HHHHHHHhhCCCC
Q 004753 234 DAYEQCLKIDPDS 246 (732)
Q Consensus 234 ~~~~~al~l~p~~ 246 (732)
..|...-+..|..
T Consensus 275 ~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 275 ALYAILSEKYPRH 287 (700)
T ss_pred HHHHHHhhcCccc
Confidence 5555555555543
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.27 E-value=1.2e-10 Score=106.12 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 142 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 142 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
++..+..+.+|..++..|++++|...|+....++|.+...|++||.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC
Q 004753 222 LYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 222 ~~~~~g~~~eA~~~~~~al~l~ 243 (732)
|+...|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777777665
No 158
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.27 E-value=2.7e-11 Score=116.33 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=125.6
Q ss_pred CCCCCcEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 004753 466 LTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 542 (732)
Q Consensus 466 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~ 542 (732)
.+++.++|+.++++ .|....+++++..+..+ .|+..|+++|.+ .....+.......++ .++|.|.+..+ ..
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~ 84 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNL-KENIIFLGYVP-DD 84 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTC-GTTEEEEESHS-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----ccccccccccccccc-ccccccccccc-cc
Confidence 45677888999887 88999999999998886 999999999854 466778888889998 58999999987 78
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcC
Q 004753 543 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 619 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 619 (732)
+....|+.+||++-|+.+ ++|++.+|||++|+|||+.....+..-+ .-+.++++. .|.++.++...++..|
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~------~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEII------NDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHS------GTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCceee------ccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 899999999999999998 7799999999999999986544332222 224455665 4569999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004753 620 VTALANLRMSLRDL 633 (732)
Q Consensus 620 ~~~~~~~r~~lr~~ 633 (732)
++.+..|++..|++
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988764
No 159
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.25 E-value=4.2e-10 Score=124.73 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=111.8
Q ss_pred CcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-HHHHHHHHHcCCCC------------CcEEEcC
Q 004753 470 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFLSTLEQLGLES------------LRVDLLP 536 (732)
Q Consensus 470 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~-~~~~~~~~~~Gv~~------------~rv~~~~ 536 (732)
..++.+.++..|....++++|.++++..|+.+|+|+|.+ +.+ +.+.+.+++.|+.. .+|.+.+
T Consensus 233 ~~vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~ 308 (425)
T PRK05749 233 RPVWIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGD 308 (425)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEe
Confidence 344555556677677789999999999999999999876 554 68889999999841 1233333
Q ss_pred CcCCcHHHHHhcccccEE-ecCCC-CCCcccHHHhhhcCCCeeecCCCcccccchh--HHhhhcCCCccccCCHHHHHHH
Q 004753 537 LILLNHDHMQAYSLMDIS-LDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAKNEDEYVQL 612 (732)
Q Consensus 537 ~~~~~~~~~~~~~~~Di~-Ld~~~-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--s~l~~~gl~~~ia~~~~~y~~~ 612 (732)
. ..+....|+.+||+ +-++- -+||.+.+|||++|+|||+-+.. +..+. ..+...|. -+...|.+++.+.
T Consensus 309 ~---~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~---~~~~e~~~~~~~~g~-~~~~~d~~~La~~ 381 (425)
T PRK05749 309 T---MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHT---FNFKEIFERLLQAGA-AIQVEDAEDLAKA 381 (425)
T ss_pred c---HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCc---cCHHHHHHHHHHCCC-eEEECCHHHHHHH
Confidence 2 35788899999995 53443 36888999999999999973311 11111 12222232 1125799999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHhhc
Q 004753 613 ALQLASDVTALANLRMSLRDLMSK 636 (732)
Q Consensus 613 a~~l~~d~~~~~~~r~~lr~~~~~ 636 (732)
...|.+|++.++++++..++...+
T Consensus 382 l~~ll~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 382 VTYLLTDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 160
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.25 E-value=1.9e-10 Score=128.70 Aligned_cols=177 Identities=13% Similarity=0.027 Sum_probs=122.1
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-cCCcCCcHHH
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDH 544 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~-~~~~~~~~~~ 544 (732)
++.++|++++|+ .|..+.+++++.+++.. +.+|+++|+| .....+.+++..+++| +++.+ .+. . .+..
T Consensus 280 ~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g--~~~~~~~l~~l~~~~~---~~v~~~~g~-~-~~~~ 350 (466)
T PRK00654 280 DDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTG--DPELEEAFRALAARYP---GKVGVQIGY-D-EALA 350 (466)
T ss_pred CCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecC--cHHHHHHHHHHHHHCC---CcEEEEEeC-C-HHHH
Confidence 367889999998 89999999999998864 7899999876 3346678888777775 45654 444 2 2334
Q ss_pred HHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhc---
Q 004753 545 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS--- 618 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~--- 618 (732)
...|+.+|++|-|+.+ +.|++.+|||++|+|||+........-+...--..-+-.+++. .|++++.+...++..
T Consensus 351 ~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~ 430 (466)
T PRK00654 351 HRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYR 430 (466)
T ss_pred HHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhc
Confidence 5678999999999999 5589999999999998874322111111000000000233443 478888877777655
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 619 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 619 d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
|++.+.+++.+.. . ..|+++.++++++++|+++..
T Consensus 431 ~~~~~~~~~~~~~---~--~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 431 QPPLWRALQRQAM---A--QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred CHHHHHHHHHHHh---c--cCCChHHHHHHHHHHHHHHhh
Confidence 6666555554332 1 358999999999999998764
No 161
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.23 E-value=1.4e-10 Score=127.76 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=121.2
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHHHhH------cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARILCA------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 538 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~------~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~ 538 (732)
+++..++++.+++ .|..+.+++++..+... .|+.+|+++|+| +.++.+++.+++.|++ +.+.|.|++
T Consensus 229 ~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~~~~~~g~~ 303 (415)
T cd03816 229 EERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG----PLKEKYLERIKELKLK-KVTIRTPWL 303 (415)
T ss_pred CCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC----ccHHHHHHHHHHcCCC-cEEEEcCcC
Confidence 3455677777876 78999999999988753 488999999987 5688999999999994 555566677
Q ss_pred CCcHHHHHhcccccEEecCCC----CCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHH
Q 004753 539 LLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLAL 614 (732)
Q Consensus 539 ~~~~~~~~~~~~~Di~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~ 614 (732)
+ .++....|+.+||++-+++ .+.+++++|||+||+|||+.... +..-+..-|..+++..|.+++.+...
T Consensus 304 ~-~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~------~~~eiv~~~~~G~lv~d~~~la~~i~ 376 (415)
T cd03816 304 S-AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK------CIDELVKHGENGLVFGDSEELAEQLI 376 (415)
T ss_pred C-HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC------CHHHHhcCCCCEEEECCHHHHHHHHH
Confidence 6 6888999999999985433 23477999999999999985432 11112223666777789999999999
Q ss_pred HhhcC---HHHHHHHHHHHHHHh
Q 004753 615 QLASD---VTALANLRMSLRDLM 634 (732)
Q Consensus 615 ~l~~d---~~~~~~~r~~lr~~~ 634 (732)
.|.+| ++.+.+|++..++..
T Consensus 377 ~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 377 DLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhh
Confidence 99999 999999988887664
No 162
>PRK14098 glycogen synthase; Provisional
Probab=99.23 E-value=2.5e-10 Score=127.76 Aligned_cols=175 Identities=14% Similarity=0.054 Sum_probs=125.9
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
++.++|++++|+ .|..+.+++++.+++. ++.+|+++|+| ....++.+++..+++ ++||.|.+..+ ..+..
T Consensus 305 ~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~---~~~V~~~g~~~-~~~~~ 376 (489)
T PRK14098 305 EETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSG--DKEYEKRFQDFAEEH---PEQVSVQTEFT-DAFFH 376 (489)
T ss_pred cCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCC--CHHHHHHHHHHHHHC---CCCEEEEEecC-HHHHH
Confidence 467889999988 7999999999998875 47999999976 334567888877776 47899999876 45667
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHH---hhcC
Q 004753 546 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQ---LASD 619 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~---l~~d 619 (732)
..|+.+|++|-|+.+ +.|.+.+|||++|+|+|+........-+.. +..-|-++++. .|.+++.+...+ +..|
T Consensus 377 ~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~ 454 (489)
T PRK14098 377 LAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHDYTPEALVAKLGEALALYHD 454 (489)
T ss_pred HHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC
Confidence 889999999999988 568999999999987776432211111100 00002234443 467777766554 4478
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 620 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 620 ~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
++.++++++. .+. .-|+++..+++++++|+++.
T Consensus 455 ~~~~~~~~~~---~~~--~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 455 EERWEELVLE---AME--RDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHHHHHHHH---Hhc--CCCChHHHHHHHHHHHHHHh
Confidence 8766665543 222 45999999999999999876
No 163
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.23 E-value=1.7e-10 Score=125.76 Aligned_cols=192 Identities=19% Similarity=0.152 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
.|-....+|...|+..+|..+..+-++ .|.++..|..+|.+.....-|++|.++.++.- +.+...+
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s-------------arA~r~~ 491 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS-------------ARAQRSL 491 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh-------------HHHHHhh
Confidence 466778899999999999999999888 66678888888888777766666666655532 2344455
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 163 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 163 (732)
|......++|.++.++++..++++|-....|+.+|.+..+.++++.|.++|..++.++|++..+|+|++..|...++..+
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 66666688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 164 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 164 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
|...++++++.+-++...|.|.-.+..+.|.+++|++.|.+.+.+.
T Consensus 572 a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 572 AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998774
No 164
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=6.7e-09 Score=115.07 Aligned_cols=229 Identities=20% Similarity=0.203 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 35 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 114 (732)
Q Consensus 35 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 114 (732)
+.+.+.....++...|++++|++++++....-.+........ |.++...|++++|...|+..++.+|++...+
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~r-------A~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy 75 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKR-------AELLLKLGRKEEAEKIYRELIDRNPDNYDYY 75 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 356788889999999999999999999887777765444444 4455556699999999999999999999999
Q ss_pred HHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCC--------------------------------HHHHHHHHHHHHH
Q 004753 115 YNLGVAYGEML-----KFDMAIVFYELAFHFNPHC--------------------------------AEACNNLGVIYKD 157 (732)
Q Consensus 115 ~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~--------------------------------~~~~~~la~~~~~ 157 (732)
..+..+..... +.+.-.++|++..+..|.. +....++-.+|..
T Consensus 76 ~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d 155 (517)
T PF12569_consen 76 RGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD 155 (517)
T ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC
Confidence 98888873332 4667777888776665542 1222333333332
Q ss_pred cCCHHHHHHHHHHHHhh---C------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004753 158 RDNLDKAVECYQMALSI---K------------PNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 220 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~---~------------p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La 220 (732)
..+.+-....+...... . |.. ..+++.++..|...|++++|+++++++|+..|+.++.|+..|
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka 235 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA 235 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 22222222222222211 0 111 246688999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHH
Q 004753 221 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 272 (732)
Q Consensus 221 ~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~ 272 (732)
.++...|++.+|.++++.+..+++.++-... -.+..++..|..+++.+..
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNs--K~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADRYINS--KCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhHHHHH--HHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999998875543 4566677777777655443
No 165
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=1.4e-08 Score=104.09 Aligned_cols=234 Identities=15% Similarity=0.066 Sum_probs=170.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
|..-+......|+++.|-.++.++-+..+ +........+.+....|+++.|..-..++++..|.++........+|..+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~ 200 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL 200 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence 33445566667777777777777766633 23455666677777777777777777777777777776666555555555
Q ss_pred hhhHh-----------------------------------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004753 84 GTKVK-----------------------------------LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 128 (732)
Q Consensus 84 g~~~~-----------------------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 128 (732)
|.... ..+..+.-..+++..-..-..++.....++.-+...|+.+
T Consensus 201 g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 201 GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChH
Confidence 43211 0011111112333322333445777888999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004753 129 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 129 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 208 (732)
+|.+..+++++..-+.. ....++ ...-++...=++..++.++..|+++..+..||..|.+.+.|.+|.++|+.+++.
T Consensus 281 ~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 281 EAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 99999999999755432 222222 235688999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 209 ~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
.|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus 358 ~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 RPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 776 677889999999999999999999999854
No 166
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.21 E-value=9.7e-10 Score=120.28 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=103.6
Q ss_pred CCCcEEEecCCC----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 468 NGFITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 468 ~~~~~f~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
.+..+++++++. .|....+++++..+ .++.+|+++|.+.. .. .++|.++|...+..+
T Consensus 239 ~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~----~~------------~~~v~~~g~~~~~~~ 299 (405)
T PRK10125 239 QGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSP----FT------------AGNVVNHGFETDKRK 299 (405)
T ss_pred CCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCc----cc------------ccceEEecCcCCHHH
Confidence 455567777762 35567777777654 36789999987521 00 246888888766778
Q ss_pred HHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccc-------c--CCHHHHHHHH
Q 004753 544 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-------A--KNEDEYVQLA 613 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~i-------a--~~~~~y~~~a 613 (732)
....|+.+|||+-|+.+ +.+++++|||+||+|||+ +++| |++|+| + .|.++.++
T Consensus 300 l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa-------t~~g-------G~~Eiv~~~~G~lv~~~d~~~La~-- 363 (405)
T PRK10125 300 LMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA-------THSD-------AAREVLQKSGGKTVSEEEVLQLAQ-- 363 (405)
T ss_pred HHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE-------eCCC-------ChHHhEeCCcEEEECCCCHHHHHh--
Confidence 89999999999999988 669999999999999998 5555 554444 2 35555554
Q ss_pred HHhhcCHHHHHH-HH---HHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 614 LQLASDVTALAN-LR---MSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 614 ~~l~~d~~~~~~-~r---~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
+.|++.+.. ++ +..|++. ...|+.+.++.+++++|+++
T Consensus 364 ---~~~~~~~~~~~~~~~~~~r~~~--~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 364 ---LSKPEIAQAVFGTTLAEFSQRS--RAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred ---ccCHHHHHHhhhhHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC
Confidence 245544443 22 2334443 23589999999999999863
No 167
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=4.4e-09 Score=105.36 Aligned_cols=260 Identities=16% Similarity=0.154 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH---HHHH-----
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKNN----- 75 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~----- 75 (732)
.-..+|.+++..|+|++|+..|+-+.+.+.-+.+.+.++|.+++.+|.|.+|.....++- +.+. ....
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~----k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP----KTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHHh
Confidence 345689999999999999999999998877788999999999999999999998777652 2221 1111
Q ss_pred ------------HHHH---HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 76 ------------MAIA---LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 76 ------------la~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
+... -..++.+.+..-.|++|++.|++.+.-+|+....-..++.+|.++.-|+-+.+.+.--+..
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 1111 1123444444558999999999999999998888889999999999888888888777776
Q ss_pred CCCCHHHHH------------------------------------------------------------------HHHHH
Q 004753 141 NPHCAEACN------------------------------------------------------------------NLGVI 154 (732)
Q Consensus 141 ~p~~~~~~~------------------------------------------------------------------~la~~ 154 (732)
.|++..+.+ ++...
T Consensus 215 ~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iY 294 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIY 294 (557)
T ss_pred CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheee
Confidence 666544443 34444
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------------------------------------
Q 004753 155 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---------------------------------------- 194 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---------------------------------------- 194 (732)
|.++++.++|+...+. ++|..|.-+...|.+....|+
T Consensus 295 yL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred ecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 4455555555554432 344444444444444333332
Q ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHH
Q 004753 195 ---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 271 (732)
Q Consensus 195 ---~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~ 271 (732)
+++.+.+++..-...-++....+++++++...|++.+|.+.|-+.-..+-.+ ...+...++.+|+..+.++-+++.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn-~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKN-KILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhh-hHHHHHHHHHHHHhcCCchHHHHH
Confidence 2222222222222233344556788999999999999999987765433223 233445678888888777666554
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.21 E-value=4.5e-10 Score=102.46 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=97.4
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 004753 104 LYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 182 (732)
Q Consensus 104 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 182 (732)
..+. ++..+..+.+|..+...|++++|.+.|+.+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3445 566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 183 NNLGVVYTVQGKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 183 ~~la~~~~~~g~~~eA~~~l~~al~~~p 210 (732)
.++|.+++..|+.++|.+.|+.++....
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988763
No 169
>PRK14099 glycogen synthase; Provisional
Probab=99.19 E-value=6.1e-10 Score=124.52 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=122.8
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcE-EEcCCcCCcHHHH
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRV-DLLPLILLNHDHM 545 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv-~~~~~~~~~~~~~ 545 (732)
+.++|++++|+ .|..+.++++..++++. +.+|+++|.| .+..++.+++..++.+ +++ .|+|. .++..
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G--~~~~~~~l~~l~~~~~---~~v~~~~G~---~~~l~ 363 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSG--DAELEARFRAAAQAYP---GQIGVVIGY---DEALA 363 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecC--CHHHHHHHHHHHHHCC---CCEEEEeCC---CHHHH
Confidence 57789999988 89999999999988753 6899999876 3456777777777663 455 68886 45666
Q ss_pred Hhc-ccccEEecCCCC-CCcccHHHhhhcCC-CeeecCCCcccccchh--HHhhhcC-CCcccc--CCHHHHHHHHHH--
Q 004753 546 QAY-SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTMAGSVHAHNVGV--SLLTKVG-LKHLIA--KNEDEYVQLALQ-- 615 (732)
Q Consensus 546 ~~~-~~~Di~Ld~~~~-~g~~t~~eal~~Gv-Pvvt~~g~~~~~r~~~--s~l~~~g-l~~~ia--~~~~~y~~~a~~-- 615 (732)
.+| ..+|+||-|+.+ +.|.+.+|||++|+ ||||-.|.. ..-+.. ......| -.+++. .|.+++.+...+
T Consensus 364 ~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl-~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 364 HLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGL-ADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred HHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCc-cceeecccccccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 665 579999999998 56999999999996 555432221 110100 0000001 234443 477888776664
Q ss_pred -hhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 616 -LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 616 -l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
+.+|++.+.++++..+. .-|+++..+++++++|+++..
T Consensus 443 ~l~~d~~~~~~l~~~~~~-----~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 443 ALFADPVAWRRLQRNGMT-----TDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHhcCHHHHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHh
Confidence 77899888777776542 359999999999999999874
No 170
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.18 E-value=4.7e-10 Score=126.07 Aligned_cols=175 Identities=14% Similarity=0.018 Sum_probs=124.3
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+.+++++++|+ .|..+.+++++.++.+. +.+|+++|.| .+...+.+++...+.+ +++.|.+..+ .++...
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTG--DPELEEALRELAERYP---GNVRVIIGYD-EALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCC--CHHHHHHHHHHHHHCC---CcEEEEEcCC-HHHHHH
Confidence 67889999998 89999999999988764 4899999876 2346667777666653 5788877654 455567
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhc----C
Q 004753 547 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS----D 619 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~----d 619 (732)
.|+.+|++|-|+.+ +.|.+.+|||++|+|||+.....+..-+...--...+-.+++. .|++++.+...++.. |
T Consensus 362 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~ 441 (473)
T TIGR02095 362 IYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD 441 (473)
T ss_pred HHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcC
Confidence 89999999999998 5588999999999999984432222111100000001333443 478888887776666 8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 620 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 620 ~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
++.+.++++... ...|+++..+++++++|+++
T Consensus 442 ~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 442 PSLWEALQKNAM-----SQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHhC
Confidence 877777665543 23599999999999999863
No 171
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=1.8e-08 Score=122.96 Aligned_cols=273 Identities=15% Similarity=0.032 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
....+|.++...|++++|...+++++...+.. ..+...+|.++...|++++|...+++++........ ......
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~ 532 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-YHYALW 532 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHH
Confidence 34457788889999999999999999854432 245678899999999999999999999987654332 223355
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWH--------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-----CA 145 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~ 145 (732)
++..++.++...|++++|...+++++..... ....+..+|.++...|++++|...+++++..... ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 6778888999999999999999999876321 1234667889999999999999999999876321 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----H
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLN----NLGVVYTVQGKMDAAAEMIEKAIAANPTYA----E 214 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~eA~~~l~~al~~~p~~~----~ 214 (732)
..+..++.++...|++++|...++++..+.... ..... .....+...|+.++|..++.......+... .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 566778999999999999999999997763322 11111 122445568999999999877654332222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hhHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 215 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS----RNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~----~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
.+..++.++...|++++|...+++++...... ..+.....++..+...|+.+++.+..++...
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 25678999999999999999999998863221 2334455677888889998877766655443
No 172
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=6.7e-09 Score=110.86 Aligned_cols=228 Identities=14% Similarity=0.062 Sum_probs=170.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 84 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 84 (732)
++.--..+...++|++|.+...+.+...|++..+....-.++.+.++|++|++..++-......+. ..+.-+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~--------~~fEKA 86 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS--------FFFEKA 86 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch--------hhHHHH
Confidence 344445566789999999999999999999999999999999999999999965554332221111 113445
Q ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 85 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 164 (732)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 164 (732)
.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|...|+..++.+.++.+.......+... .+
T Consensus 87 Yc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-----a~ 158 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-----AA 158 (652)
T ss_pred HHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-----Hh
Confidence 55566779999999999 45666677888999999999999999999999988876665444333222111 11
Q ss_pred HHH-HHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC--C-----HHHHHHHHHHHHHcC
Q 004753 165 VEC-YQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--------PT--Y-----AEAYNNLGVLYRDAG 227 (732)
Q Consensus 165 ~~~-~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--------p~--~-----~~~~~~La~~~~~~g 227 (732)
... ..+.....|. ..+.++|.+.++...|+|.+|++.+++++.+. .+ . ..+...|+.++..+|
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 111 3344444554 56789999999999999999999999995541 11 1 235677999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChh
Q 004753 228 SISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 228 ~~~eA~~~~~~al~l~p~~~~ 248 (732)
+.++|...|...++.+|-+..
T Consensus 239 qt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred chHHHHHHHHHHHHhcCCCch
Confidence 999999999999999887753
No 173
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=4.7e-09 Score=110.36 Aligned_cols=159 Identities=17% Similarity=0.151 Sum_probs=144.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 107 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 186 (732)
Q Consensus 107 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 186 (732)
+|....+++..+..++..|++++|++.++..++..|+|+..+...+.++...++.++|.+.+++++.++|+.+....++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCc
Q 004753 187 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 265 (732)
Q Consensus 187 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~ 265 (732)
.+|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+.+.+..+...+......+......+..
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 9999999999999999999999999999999999999999999999999999988887776666555555544444444
No 174
>PHA01630 putative group 1 glycosyl transferase
Probab=99.14 E-value=1.1e-09 Score=116.13 Aligned_cols=169 Identities=13% Similarity=0.068 Sum_probs=112.6
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+.++++..+++ .|..+.++++|..+....|+.+|+++|++. ...++ .++. . +.+.++ .++...
T Consensus 141 ~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~----~~~~l------~~~~-~---~~~~v~-~~~l~~ 205 (331)
T PHA01630 141 HPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNM----LDPRL------FGLN-G---VKTPLP-DDDIYS 205 (331)
T ss_pred CCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcc----cchhh------cccc-c---eeccCC-HHHHHH
Confidence 44566555554 899999999999999889999999998552 11111 1331 1 233455 578889
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchh---HHhhh------------cCCCccccCCHHHHH
Q 004753 547 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV---SLLTK------------VGLKHLIAKNEDEYV 610 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~---s~l~~------------~gl~~~ia~~~~~y~ 610 (732)
.|+.+||++-|+.+ +.|.+.+|||++|+|||+.....+..-+.. ++|.. -+..-++..|.++..
T Consensus 206 ~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 285 (331)
T PHA01630 206 LFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAY 285 (331)
T ss_pred HHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHH
Confidence 99999999999988 559999999999999998553322221110 00000 001112344778888
Q ss_pred HHHHHhhcC---HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 611 QLALQLASD---VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 611 ~~a~~l~~d---~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
+.++++..| ++.++.++...+.. ..-|+.+..+.+++++|++
T Consensus 286 ~~ii~~l~~~~~~~~~~~~~~~~~~~---~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 286 QKLLEALANWTPEKKKENLEGRAILY---RENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhc
Confidence 888898887 34444444443333 2348999999999999964
No 175
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.14 E-value=2.5e-09 Score=116.69 Aligned_cols=265 Identities=11% Similarity=0.087 Sum_probs=153.7
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCch--hhhc-c-----CCCCeEEecccC---CCCCCCCCccEEEecCCCCCcCc--
Q 004753 367 KKVAAMVREDKIDILVELTGHTANNKL--GMMA-C-----QPAPVQVTWIGY---PNTTGLPTIDYRITDSLADPPET-- 433 (732)
Q Consensus 367 ~~~~~~i~~d~~Dilvdl~g~t~~~~~--~~~a-~-----r~Apvq~~~~g~---p~t~g~~~~Dy~~~d~~~~p~~~-- 433 (732)
..+.+.|++.++||+|-. |...++. .++. . ...|+-+..-.+ ......+.+|++++-.-......
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~~ 167 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRALK 167 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEECCHHHHHHHHH
Confidence 468889999999999873 4333332 1221 1 134654321112 11233466788885320000000
Q ss_pred ccCCccceEEcCCCc-cccCCCC-CCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHh----HcCCcEE-EE
Q 004753 434 KQKHVEELIRLPECF-LCYTPSP-EAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILC----AVPNSRL-VV 504 (732)
Q Consensus 434 ~~~~~E~l~~lp~~~-~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~----~~p~~~l-~l 504 (732)
...-.+++...+... -.|.+.. .....+...+++++.++++.+++. .|....+++.+..++. ..|+.++ ++
T Consensus 168 ~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi 247 (382)
T PLN02605 168 RGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVI 247 (382)
T ss_pred cCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEE
Confidence 111235666654321 1121111 111112234566777777777765 6667778887776652 2466654 45
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcc
Q 004753 505 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH 584 (732)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~ 584 (732)
.|.+ ...++++.+ ... ..+|.|+|.+. +...+|+.+|+++.+ +|+.|++|||++|+|||+..--..
T Consensus 248 ~G~~---~~~~~~L~~----~~~-~~~v~~~G~~~---~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~pg 313 (382)
T PLN02605 248 CGRN---KKLQSKLES----RDW-KIPVKVRGFVT---NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIPG 313 (382)
T ss_pred ECCC---HHHHHHHHh----hcc-cCCeEEEeccc---cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCCc
Confidence 5543 234444443 322 35799999974 566777889999963 367899999999999998652111
Q ss_pred cccchhHHhhhcCCCccccCCHHHHHHHHHHhhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 004753 585 AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLES 651 (732)
Q Consensus 585 ~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d-~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~ 651 (732)
....++..+...|.. ++..|+++..+...+|..| ++.+++|++..++.... ......+..+.+
T Consensus 314 qe~gn~~~i~~~g~g-~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~---~a~~~i~~~l~~ 377 (382)
T PLN02605 314 QEEGNVPYVVDNGFG-AFSESPKEIARIVAEWFGDKSDELEAMSENALKLARP---EAVFDIVHDLHE 377 (382)
T ss_pred cchhhHHHHHhCCce-eecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---chHHHHHHHHHH
Confidence 112234445555654 3458999999999999988 99999999988876322 245566655543
No 176
>PHA01633 putative glycosyl transferase group 1
Probab=99.14 E-value=9e-10 Score=115.59 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=106.9
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcC---CcC
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP---LIL 539 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~---~~~ 539 (732)
+.++|++++|+ .|..+.++++|.++.++.|+ .+|+++|.+ .+.++++ .++|.|++ .++
T Consensus 147 ~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~------------~~~~l~l-~~~V~f~g~~G~~~ 213 (335)
T PHA01633 147 DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK------------QFTQLEV-PANVHFVAEFGHNS 213 (335)
T ss_pred CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH------------HHHHcCC-CCcEEEEecCCCCC
Confidence 45678888887 99999999999999988886 467776521 2356677 58999985 444
Q ss_pred CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchh--HHhhh-----------cCCCccc--c
Q 004753 540 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----------VGLKHLI--A 603 (732)
Q Consensus 540 ~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--s~l~~-----------~gl~~~i--a 603 (732)
.++....|+.+|++|-|+-+ +.|.+.+|||+||+|||+-....+..-+|. .+|.. -|. +|. .
T Consensus 214 -~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~-g~~~~~ 291 (335)
T PHA01633 214 -REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ-KWKIHK 291 (335)
T ss_pred -HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc-eeeecC
Confidence 57888999999999999988 569999999999999998544333332221 11100 011 122 2
Q ss_pred CCHHHHHHHHHHh--hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 004753 604 KNEDEYVQLALQL--ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 650 (732)
Q Consensus 604 ~~~~~y~~~a~~l--~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e 650 (732)
.|++++++...++ ..|++.+ .+.++++. ..||.+.+.++++
T Consensus 292 ~d~~~la~ai~~~~~~~~~~~~---~~~~~~~a---~~f~~~~~~~~~~ 334 (335)
T PHA01633 292 FQIEDMANAIILAFELQDREER---SMKLKELA---KKYDIRNLYTRFL 334 (335)
T ss_pred CCHHHHHHHHHHHHhccChhhh---hHHHHHHH---HhcCHHHHHHHhh
Confidence 3666666666555 2343333 33444443 2378888777765
No 177
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.14 E-value=1.6e-09 Score=118.24 Aligned_cols=267 Identities=10% Similarity=0.084 Sum_probs=150.4
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCC--CCeEEe--cccCCCCCCCCCccEEEecCCCCCcCc--ccCCccc
Q 004753 367 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVT--WIGYPNTTGLPTIDYRITDSLADPPET--KQKHVEE 440 (732)
Q Consensus 367 ~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~--Apvq~~--~~g~p~t~g~~~~Dy~~~d~~~~p~~~--~~~~~E~ 440 (732)
..+.+.|++.++||+|-..+.. +-..+.+.+- -|+-.. ..|.+...-.+.+|.+++-.-..-... ...-.++
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~k 171 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVATDHVKKVLVDIGVPPEQ 171 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECCHHHHHHHHHcCCChhH
Confidence 5688889999999998533222 1111111222 354321 123233333456777765320000000 0112345
Q ss_pred eEEcCCCcc-ccCCCCCCCCCCCCCCCCC-CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHH
Q 004753 441 LIRLPECFL-CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 516 (732)
Q Consensus 441 l~~lp~~~~-~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~ 516 (732)
+..++.... .|.+.......+...++++ ..+++...++. .|....+++.+ ...|+.++++++++ +...++
T Consensus 172 i~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~~~~~~~viv~G~--~~~~~~ 245 (380)
T PRK13609 172 VVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MSVPDLQVVVVCGK--NEALKQ 245 (380)
T ss_pred EEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hhCCCcEEEEEeCC--CHHHHH
Confidence 555432211 1111111001111224443 34444444554 34444444433 34588898877532 235677
Q ss_pred HHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhc
Q 004753 517 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 596 (732)
Q Consensus 517 ~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~ 596 (732)
.+++.....+ ++|.|+|.+. +...+|..+|+++. -+||.|++|||++|+|||+.....-.....+..+...
T Consensus 246 ~l~~~~~~~~---~~v~~~g~~~---~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~ 316 (380)
T PRK13609 246 SLEDLQETNP---DALKVFGYVE---NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK 316 (380)
T ss_pred HHHHHHhcCC---CcEEEEechh---hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC
Confidence 7877766654 6899999864 45567778999983 3578899999999999998431100111222344444
Q ss_pred CCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 597 GLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 597 gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
|. .++..|.+++.+...++.+|++.++++++..++.. .-++.+.+++.+++.+.
T Consensus 317 G~-~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 317 GA-AVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLY---LPEPADHIVDDILAENH 370 (380)
T ss_pred Cc-EEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhh
Confidence 54 24568999999999999999999999998877532 22578888888877654
No 178
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.14 E-value=1.5e-09 Score=117.04 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=104.8
Q ss_pred EEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhccc
Q 004753 473 FGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 550 (732)
Q Consensus 473 f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~ 550 (732)
+.+.+++ .|..+.+++++.+ .| .+|+++|.| +..+.+++ +. .++|.|+|.++ .++....|..
T Consensus 198 il~~G~~~~~K~~~~li~a~~~----~~-~~l~ivG~g----~~~~~l~~-----~~-~~~V~~~g~~~-~~~~~~~~~~ 261 (351)
T cd03804 198 YLSVGRLVPYKRIDLAIEAFNK----LG-KRLVVIGDG----PELDRLRA-----KA-GPNVTFLGRVS-DEELRDLYAR 261 (351)
T ss_pred EEEEEcCccccChHHHHHHHHH----CC-CcEEEEECC----hhHHHHHh-----hc-CCCEEEecCCC-HHHHHHHHHh
Confidence 4455666 7777777776654 56 889999987 44445444 44 58999999997 6789999999
Q ss_pred ccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHH
Q 004753 551 MDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRM 628 (732)
Q Consensus 551 ~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~ 628 (732)
+|+++-|+..+.|.+.+|||+||+|||+........-+. -|-.++++ .|.+++++....+.+|++ ..++
T Consensus 262 ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~------~~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~ 332 (351)
T cd03804 262 ARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALETVI------DGVTGILFEEQTVESLAAAVERFEKNED---FDPQ 332 (351)
T ss_pred CCEEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcceee------CCCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHH
Confidence 999999888666899999999999999855332222111 13334443 678889999999999984 2334
Q ss_pred HHHHHhhcCCCCChHHHHHHH
Q 004753 629 SLRDLMSKSPVCDGQNFALGL 649 (732)
Q Consensus 629 ~lr~~~~~~~~~~~~~~~~~~ 649 (732)
.++++.. .|+.+.|.+++
T Consensus 333 ~~~~~~~---~~~~~~~~~~~ 350 (351)
T cd03804 333 AIRAHAE---RFSESRFREKI 350 (351)
T ss_pred HHHHHHH---hcCHHHHHHHh
Confidence 4444322 27888887765
No 179
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=1.3e-08 Score=107.15 Aligned_cols=154 Identities=16% Similarity=0.027 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 004753 67 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 146 (732)
Q Consensus 67 p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (732)
|....+++..+..++. .|++++|+..++..++..|+|+..+...+.++...++.++|.+.+++++.++|+...
T Consensus 303 ~~~~aa~YG~A~~~~~-------~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~ 375 (484)
T COG4783 303 RGGLAAQYGRALQTYL-------AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL 375 (484)
T ss_pred ccchHHHHHHHHHHHH-------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH
Confidence 4444455555544444 569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 226 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~ 226 (732)
...++|..|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|... .++.|...
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~ 438 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALA 438 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhC
Confidence 9999999999999999999999999999999999999999999999988776654 46667889
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 004753 227 GSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 227 g~~~eA~~~~~~al~l~p 244 (732)
|++++|+..+..+.+...
T Consensus 439 G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 439 GRLEQAIIFLMRASQQVK 456 (484)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999988763
No 180
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=1.2e-09 Score=113.07 Aligned_cols=228 Identities=16% Similarity=0.083 Sum_probs=113.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-----------
Q 004753 11 VYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI----------- 78 (732)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~----------- 78 (732)
.++..|+|.+++..++ ....++ ........+.+++..+|+++..+.-....- .|... +...++.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~-av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQ-AVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCH-HHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHH-HHHHHHHHHhCccchHHH
Confidence 4456788888887666 222232 234566677777788887775544332210 11111 1111111
Q ss_pred ------------------HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 79 ------------------ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 79 ------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
.....+.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+-+.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1122233444455555555555432 34455555555555566666666666555555
Q ss_pred CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004753 141 NPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 218 (732)
Q Consensus 141 ~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 218 (732)
+.+..-.....+++....| ++.+|...|++..+..+.++..++.++.++..+|++++|.+.+++++..+|++++++.+
T Consensus 161 ~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 161 DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 5444333333333333333 35556666665555555555555556666666666666666666665555555555556
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHhhCCCCh
Q 004753 219 LGVLYRDAGSI-SLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 219 La~~~~~~g~~-~eA~~~~~~al~l~p~~~ 247 (732)
++.+...+|+. +.+.+++.+....+|+++
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 65555555555 344455555555555544
No 181
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.12 E-value=1.6e-09 Score=117.51 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=128.3
Q ss_pred CCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 466 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 466 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
...+.++|++++++ .|..+.+++++.++... |+.+|+++|.+ .....+.+.....++ ++|.|.|.++ .++
T Consensus 216 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~----~~~~~~~~~~~~~~~--~~v~~~g~~~-~~~ 287 (394)
T cd03794 216 GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDG----PEKEELKELAKALGL--DNVTFLGRVP-KEE 287 (394)
T ss_pred CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCc----ccHHHHHHHHHHcCC--CcEEEeCCCC-hHH
Confidence 44567788888877 78889999999988877 99999999876 445566665566666 5799999876 678
Q ss_pred HHHhcccccEEecCCCCCC------cccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHH
Q 004753 544 HMQAYSLMDISLDTFPYAG------TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQ 615 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~~g------~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~ 615 (732)
....|..+|+++-|+..++ +++++|||++|+|||+........-+. . |-.+++. .|.+++++...+
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~-----~-~~~g~~~~~~~~~~l~~~i~~ 361 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVE-----E-AGAGLVVPPGDPEALAAAILE 361 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhc-----c-CCcceEeCCCCHHHHHHHHHH
Confidence 8999999999999887643 445899999999999966543222111 1 2223333 489999999999
Q ss_pred hhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004753 616 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 649 (732)
Q Consensus 616 l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~ 649 (732)
+..|++.+..+++..++.... -|+++.++..+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~ 393 (394)
T cd03794 362 LLDDPEERAEMGENGRRYVEE--KFSREKLAERL 393 (394)
T ss_pred HHhChHHHHHHHHHHHHHHHH--hhcHHHHHHhc
Confidence 999999999999988877543 37888887765
No 182
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=5.2e-09 Score=102.65 Aligned_cols=217 Identities=16% Similarity=0.106 Sum_probs=174.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCC
Q 004753 13 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 92 (732)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~ 92 (732)
....+|++|++++..-.+.+|.+...+..+|.||+...+|..|.++|++.-.+.|+........+..+++ .+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-------A~i 93 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-------ACI 93 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-------hcc
Confidence 6788999999999999999999999999999999999999999999999999999877666655666665 458
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 93 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 172 (732)
Q Consensus 93 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 172 (732)
+.+|+...........-.......-+.+.+..+++..+..+.++.- ..+.+....+.|-+.++.|++++|++-|+.++
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 8888888776654322223445555667777888877777766532 12567888999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC----------------C---------HHHHHHHHHHH
Q 004753 173 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA----NPT----------------Y---------AEAYNNLGVLY 223 (732)
Q Consensus 173 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~----~p~----------------~---------~~~~~~La~~~ 223 (732)
+...-++..-++++.++++.++++.|+++..+.++. .|. + .++++..+-++
T Consensus 172 qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 999888899999999999999999999988877764 332 1 24556677888
Q ss_pred HHcCCHHHHHHHHHH
Q 004753 224 RDAGSISLAIDAYEQ 238 (732)
Q Consensus 224 ~~~g~~~eA~~~~~~ 238 (732)
++.|+++.|.+.+..
T Consensus 252 yq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTD 266 (459)
T ss_pred hhcccHHHHHHHhhc
Confidence 999999988876543
No 183
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.09 E-value=2.1e-09 Score=115.22 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=48.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 152 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 231 (732)
Q Consensus 152 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~e 231 (732)
|..++..|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.+|..+|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44444444444444444444444444444444455555555555555555555555555444455555555555555555
Q ss_pred HHHHHHHHHhhCCCChhHH
Q 004753 232 AIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 232 A~~~~~~al~l~p~~~~a~ 250 (732)
|+..|+++++++|++..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 5555555555555444443
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.09 E-value=7.6e-09 Score=107.64 Aligned_cols=186 Identities=22% Similarity=0.273 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004753 38 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 117 (732)
Q Consensus 38 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 117 (732)
.+...|.+|...+++++|.++|.++.....+.. .....+.++...+.++... ++++|+.+|++++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~------------- 101 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI------------- 101 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH-------------
Confidence 344457778888888888888888866543322 2233455666666665544 7777777777766
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHH
Q 004753 118 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPN--F----SQSLNNLGVVYT 190 (732)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~ 190 (732)
.+|...|++..|-. .+..+|.+|... |++++|+++|++|+.+... . ..++..+|.++.
T Consensus 102 -~~y~~~G~~~~aA~--------------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 -EIYREAGRFSQAAK--------------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp -HHHHHCT-HHHHHH--------------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred -HHHHhcCcHHHHHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 34555666655544 445567777777 8888888888888876321 1 346778899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHH
Q 004753 191 VQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 253 (732)
Q Consensus 191 ~~g~~~eA~~~l~~al~~~p~~-------~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 253 (732)
..|+|++|++.|++.....-++ ...+...+.|+...|+...|...+++....+|......-..
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 9999999999999988753221 23456788899999999999999999999999765554433
No 185
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.06 E-value=5.8e-09 Score=114.05 Aligned_cols=175 Identities=13% Similarity=0.129 Sum_probs=120.2
Q ss_pred CCCC-CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 004753 465 ALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 541 (732)
Q Consensus 465 ~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~ 541 (732)
+++. ..+++...+++ .|....+++.+ ++..|+.++++++++ +...++.+.+.+ +. .++|.|+|++
T Consensus 197 ~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~--~~~l~~~l~~~~---~~-~~~v~~~G~~--- 264 (391)
T PRK13608 197 NLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGK--SKELKRSLTAKF---KS-NENVLILGYT--- 264 (391)
T ss_pred CCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCC--CHHHHHHHHHHh---cc-CCCeEEEecc---
Confidence 3443 34444455665 36555666653 455688888776432 223445555433 33 3579999986
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHH
Q 004753 542 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 621 (732)
Q Consensus 542 ~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~ 621 (732)
.+...+|..+|+++-. +||.|+.|||++|+|||+..-..-.....+-++...|.. +++.|.++.++...+|.+|++
T Consensus 265 ~~~~~~~~~aDl~I~k---~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 265 KHMNEWMASSQLMITK---PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KIADTPEEAIKIVASLTNGNE 340 (391)
T ss_pred chHHHHHHhhhEEEeC---CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCHH
Confidence 3566777889999842 578899999999999999742111233445566666764 456799999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 622 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 622 ~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
.+.++++..++.. .-++....+..+++.+..+-+
T Consensus 341 ~~~~m~~~~~~~~---~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 341 QLTNMISTMEQDK---IKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHHHHHHHHHHhc---CCCCHHHHHHHHHHHhhhhhh
Confidence 9999999988752 237889999999888776554
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.06 E-value=3e-08 Score=100.18 Aligned_cols=183 Identities=13% Similarity=0.037 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA---YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
++.+|..|..++..|+|++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++..|+++.+ ..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~----~~ 107 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----DY 107 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----HH
Confidence 3567899999999999999999999999999987654 4899999999999999999999999999988643 33
Q ss_pred HHHHhhhhHhhc------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 79 ALTDLGTKVKLE------------------GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 79 ~~~~lg~~~~~~------------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
+++.+|.++... ....+|+..|++.++..|+..-+ .+|...+..+
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l--- 170 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL--- 170 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH---
Confidence 344444332111 22456888899999998876431 1111111111
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 141 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKA 205 (732)
Q Consensus 141 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~a 205 (732)
...-..--+..|..|.+.|+|..|+.-++.+++..|+. .+++..++.+|..+|..++|.+.....
T Consensus 171 ~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 171 KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 01112233467788888889999999999998887765 457888888898999988888766543
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=2.4e-09 Score=110.80 Aligned_cols=146 Identities=14% Similarity=0.033 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 190 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 190 (732)
.......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++++-+.+.+..-.....+++..
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 345566677888889999999888764 567888888899999999999999999998888776655555666666
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhc
Q 004753 191 VQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 261 (732)
Q Consensus 191 ~~g--~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~ 261 (732)
..| ++.+|...|++..+..+..+..+..++.++..+|++++|.+.++++++.+|++++...|++.+..+..
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 666 69999999999888888889999999999999999999999999999999999999998766555543
No 188
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=5.8e-09 Score=111.87 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
.-+...|..++..|+|++|+.+|+++++.+|++..+++++|.++..+|++++|+..++++++++|+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-------------- 68 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-------------- 68 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------
Confidence 334555555555566666666666666655555555555555555555555555555555555554
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 158 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (732)
+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....
T Consensus 69 ---------------------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 ---------------------------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ---------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555554433
No 189
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=4.3e-08 Score=119.64 Aligned_cols=244 Identities=13% Similarity=0.028 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH-HHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNM 76 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l 76 (732)
++..+|.++...|++++|...+++++..... ...++..+|.++...|++++|...+++++........ .....
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4567899999999999999999999875332 1346778899999999999999999999987433210 00111
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC 148 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 148 (732)
+.++..++.++...|++++|...+++++..... ....+..++.++...|++++|...++++..+.... ....
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223455777888889999999999999876332 24466778999999999999999999997763321 1111
Q ss_pred H----HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHH
Q 004753 149 N----NLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAE 214 (732)
Q Consensus 149 ~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~~al~~~p------~~~~ 214 (732)
. .....+...|+.++|..++.......+.... .+..++.++...|++++|...+++++.... ....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1 1224455689999999998776553322221 256789999999999999999999988632 2245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 215 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
++..+|.++...|+.++|...+.+++++.....
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 788899999999999999999999999876543
No 190
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=1.5e-07 Score=109.08 Aligned_cols=256 Identities=16% Similarity=0.113 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHH
Q 004753 19 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 97 (732)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~ 97 (732)
.+..+-|++.+..+|+....|...-...++.++.++|.+.+++||. +++...+-..++..+|.++-..| |.-+.-.
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHH
Confidence 3456678888999999999999999999999999999999999997 45665666667777777776655 4566778
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 98 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
+.|++|.+... -..+|..|..+|...+++++|.++|+..++...+....|..++..++++++-++|...+++|++.-|.
T Consensus 1518 kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1518 KVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 88888887653 34578889999999999999999999999998888999999999999999999999999999999887
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 004753 178 --FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 255 (732)
Q Consensus 178 --~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~l 255 (732)
+.+.....|.+-++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+.=.-..+..-+-.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 677888999999999999999999999999999999999999999999999999999999999875443333333223
Q ss_pred HHhhhccCCcHHHHHHHHHHHHH
Q 004753 256 AMNYINEGHDDKLFEAHRDWGKR 278 (732)
Q Consensus 256 a~~~~~~~~~~~a~~~~~~~~~~ 278 (732)
-+.|-...-+++..++-+.-+..
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHHHH
Confidence 33443332223344444333333
No 191
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.02 E-value=4e-09 Score=118.80 Aligned_cols=168 Identities=16% Similarity=0.026 Sum_probs=120.4
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
++.++++.++|+ .|..+.+++++.++.+. +.+|+++|.| .....+.+++...+. .++|.|.+... .....
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSG--DPEYEEALRELAARY---PGRVAVLIGYD-EALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecC--CHHHHHHHHHHHHhC---CCcEEEEEeCC-HHHHH
Confidence 677889999988 89999999999888764 3899999876 345566676666665 57888776654 44556
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCC------Ccccc--CCHHHHHHHHHHh
Q 004753 546 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL------KHLIA--KNEDEYVQLALQL 616 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl------~~~ia--~~~~~y~~~a~~l 616 (732)
..|+.+|++|-|+.+ +.|.+.+|||++|+|||+.....+..-+.. |- ++++. .|.+++.+...++
T Consensus 366 ~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~------~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 366 LIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVID------YNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeC------CcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 788999999999988 668899999999999998443322221111 21 34443 4677887777665
Q ss_pred h---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 617 A---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 617 ~---~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
. .+++.+.+++++..+ ..|+++.+++++++.|+
T Consensus 440 l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 440 LALYRDPEAWRKLQRNAMA-----QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHh
Confidence 5 466666655554432 24999999999999986
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=3.6e-08 Score=97.19 Aligned_cols=181 Identities=20% Similarity=0.199 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH---HHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (732)
++.+|..|..++..|+|.+|+..|++++...|. ...+.+.+|.+++..|++++|+..+++.++..|+++. +.+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 467899999999999999999999999998776 4679999999999999999999999999999998763 4455
Q ss_pred HHHHHHHhhhh----HhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004753 76 MAIALTDLGTK----VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 151 (732)
Q Consensus 76 la~~~~~lg~~----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 151 (732)
++.+++.+..- ....+...+|+..|+..++..|+...+ .+|...+..+-. ....--+.+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~i 147 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHHH
Confidence 55555444322 334455667888888888888876432 112111111100 012233456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 004753 152 GVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAA 199 (732)
Q Consensus 152 a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~ 199 (732)
|..|.+.|++..|+..++.+++..|+.. +++..++.+|.++|..+.|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 7888888888888888888888888774 46777888888888877443
No 193
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.2e-07 Score=95.41 Aligned_cols=229 Identities=18% Similarity=0.134 Sum_probs=171.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhc
Q 004753 12 YSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 90 (732)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~ 90 (732)
+....+|.-|+.+++-.+..+... ......+|.|++.+|+|++|+..|+-+.+.+.-..+.+.+++.+++.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg------ 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG------ 105 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH------
Confidence 456789999999999887665443 3677889999999999999999999998866666667777777777766
Q ss_pred CCHHHHHHHHHHHHH--------------hCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004753 91 GDINQGVAYYKKALY--------------YNW------------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 144 (732)
Q Consensus 91 g~~~~A~~~~~~al~--------------~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (732)
.|.+|.....++-+ ++. +..+-...++.+.+..-.|++|++.|++.+.-+|+.
T Consensus 106 -~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 106 -QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred -HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 77777766555421 111 111234566777777778999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHH----------------HHHH---
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--GKMDAAA----------------EMIE--- 203 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~eA~----------------~~l~--- 203 (732)
...-.+++.+|+++.-++-+.+.+.-.++..|+.+.+.+.++..+++. |+..++. ..++
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 888899999999999999999999999999999998888877766653 3332221 1111
Q ss_pred -------HHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 004753 204 -------KAIAANP----TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 204 -------~al~~~p----~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 250 (732)
-+++.-| -.+++..+|...|.++++.++|+...+ +++|..+.-+
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~Ey 319 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEY 319 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHH
Confidence 1111122 237788999999999999999988766 4678766543
No 194
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=5.9e-07 Score=96.36 Aligned_cols=257 Identities=17% Similarity=0.138 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------CC-CHHHHHHHHHHHHHCCCH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALER------------------------------PM-YAEAYCNMGVIYKNRGDL 52 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------p~-~~~a~~~lg~~~~~~g~~ 52 (732)
.....|.+++.+|+|++|...|+..++.+ |. ..+.+++.+.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 45678999999999999999999985421 11 456789999999999999
Q ss_pred HHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHH-----------
Q 004753 53 ESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA----------- 113 (732)
Q Consensus 53 ~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------- 113 (732)
.+|++.+++++++ +.+..+....+..+-.+++.++..+|+.++|...|...++.++.+...
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhh
Confidence 9999999999544 223345566777788889999999999999999999999887654311
Q ss_pred --------------------------------------HHHHHHHHHHcC------------------------------
Q 004753 114 --------------------------------------MYNLGVAYGEML------------------------------ 125 (732)
Q Consensus 114 --------------------------------------~~~la~~~~~~g------------------------------ 125 (732)
+.+.+.+.+..+
T Consensus 272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~ 351 (652)
T KOG2376|consen 272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATK 351 (652)
T ss_pred ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHH
Confidence 111111111111
Q ss_pred ----CHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcC
Q 004753 126 ----KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQG 193 (732)
Q Consensus 126 ----~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g 193 (732)
.+.+|.+++.+..+.+|.+ ..+...++.+...+|+++.|++.+...+.. ....+..-..+-..+...+
T Consensus 352 ~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 352 VREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIK 431 (652)
T ss_pred HHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhcc
Confidence 1233333333333344444 445555666666667777776666632211 1112223333333444555
Q ss_pred CHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhh
Q 004753 194 KMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 260 (732)
Q Consensus 194 ~~~eA~~~l~~al~~-------~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~ 260 (732)
+-+-|...+.+++.- .+.....+..++....+.|+.++|...+++.++.+|++.+....+..++.++
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 544444444444432 1122234556777778889999999999999999999999988887777665
No 195
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=7.1e-07 Score=93.10 Aligned_cols=226 Identities=16% Similarity=0.123 Sum_probs=185.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhH---hhcCCHHHHHHHHH
Q 004753 25 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV---KLEGDINQGVAYYK 101 (732)
Q Consensus 25 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~---~~~g~~~~A~~~~~ 101 (732)
|++.++.+|.+.++|+..-.+-...|+.+.-.+.|++|+..-|...+.....-.+|..+..++ ....+.+.+.+.|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 566677899999999999999999999999999999999988875544333333333333322 24678999999999
Q ss_pred HHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 102 KALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 102 ~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
.++++-|.. +..|...|....++.+...|.+.+-.|+-..|.+ ........+-.++++++....+|++-++..|.
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 999998864 6789999999999999999999999999999974 45555667777899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AE-AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~-~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
+..+|...|.+-..+|+.+.|...|+-|+....-+ ++ .|-.....-...|.++.|...|++.|+..+... .+..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 99999999999999999999999999998765433 33 344556666788999999999999999887655 4443
No 196
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.96 E-value=1.7e-08 Score=90.13 Aligned_cols=104 Identities=24% Similarity=0.310 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 219 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~L 219 (732)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+.+|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456667777777777777777777777766654 4566777777777777777777777777776654 5567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 220 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 220 a~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
|.++..+|++++|+.+++++++..|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777777776543
No 197
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.96 E-value=3.5e-08 Score=99.40 Aligned_cols=241 Identities=17% Similarity=0.201 Sum_probs=190.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
+......|.-++...++++|+..+.+.+..-.+. ...+-.+..+..++|.|++++.+--..+....+..+.. .+-.
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~-~~~e 84 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD-FLLE 84 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3456778899999999999999999998764432 34556677788899999999887766666544433222 2345
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEA 147 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 147 (732)
++.+++..+....++.+++.+.+..+.+.... ..+...++.++..++.++++++.|++|++...++ ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 66777777777779999999998888764333 3567789999999999999999999999874332 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC
Q 004753 148 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN------PT 211 (732)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~------p~ 211 (732)
+..+|.++....++++|.-+..++.++.... ..+++.++..+..+|+...|.++.+++.++. +.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 8899999999999999999999998874322 2367889999999999999999999998762 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 212 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 212 ~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
.......+|.+|...|+.+.|..-|+++...-
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 35567789999999999999999999998753
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.96 E-value=1.6e-07 Score=94.99 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=115.2
Q ss_pred HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 004753 80 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA---MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGV 153 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 153 (732)
++..|......|++++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|++ ..+++.+|.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 4445566666789999999999999988887654 4888999999999999999999999987766 567788887
Q ss_pred HHHHcC---------------C---HHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHcCCHHHH
Q 004753 154 IYKDRD---------------N---LDKAVECYQMALSIKPNFSQS-----------------LNNLGVVYTVQGKMDAA 198 (732)
Q Consensus 154 ~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~eA 198 (732)
++...+ + ..+|+..|++.++..|+...+ -...|..|.+.|+|..|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV 194 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 754433 1 346778888888888876321 22446667777777777
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 199 AEMIEKAIAANPTY---AEAYNNLGVLYRDAGSISLAIDAYEQ 238 (732)
Q Consensus 199 ~~~l~~al~~~p~~---~~~~~~La~~~~~~g~~~eA~~~~~~ 238 (732)
+.-++.+++..|+. .+++..++..|..+|..++|.++...
T Consensus 195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77777777776654 45667777777777777777665543
No 199
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.96 E-value=3.7e-08 Score=113.96 Aligned_cols=180 Identities=11% Similarity=0.051 Sum_probs=150.9
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC
Q 004753 31 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 110 (732)
Q Consensus 31 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 110 (732)
.+|.+..++..+...+...+++++|+..++.+++..|+....++.+| .++.+.+++.++... .++
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G-------~l~~q~~~~~~~~lv--~~l------ 90 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISG-------ILSLSRRPLNDSNLL--NLI------ 90 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHH-------HHHHhhcchhhhhhh--hhh------
Confidence 57889999999999999999999999999999999999876555444 444445565555444 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 190 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 190 (732)
.......++ .+.+++...+...+++..+++.+|.+|-++|+.++|...|+++++.+|+++.+++++|..|.
T Consensus 91 --------~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 91 --------DSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------hhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 334444556 66677777777788888899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 191 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 191 ~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
.. +.++|++++.+|+.. |...+++.++.+++++.+..+|++.+.
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence 99 999999999999875 667779999999999999999998765
No 200
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.95 E-value=9.1e-07 Score=87.42 Aligned_cols=224 Identities=31% Similarity=0.410 Sum_probs=190.8
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhhhhHhhc
Q 004753 15 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE 90 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~lg~~~~~~ 90 (732)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+..+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence 46777788888888887776 478889999999999999999999999987 444433 3444555556666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 91 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE 166 (732)
Q Consensus 91 g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~ 166 (732)
+++.++++.+.+++...+.........+. ++...|++++|...+++++...| .....+...+..+...+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 78999999999999988877666666666 89999999999999999988776 356677777777888999999999
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 167 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 167 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
.+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...++++++...+.+++...|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999 68999999999999999999999999999999987778888888888888899999999999999987
No 201
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=98.95 E-value=1.3e-08 Score=113.17 Aligned_cols=172 Identities=16% Similarity=0.081 Sum_probs=120.6
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHH----HHHHHHHHHHHcCCC-----CC
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDS----VRHRFLSTLEQLGLE-----SL 530 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~-~~~~----~~~~~~~~~~~~Gv~-----~~ 530 (732)
..+..++++++|+ .|..+..++++.++++..|+ .+|+++|.+. ++.+ +++.+.+.+.+.+.. -.
T Consensus 261 ~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~ 340 (460)
T cd03788 261 LGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWT 340 (460)
T ss_pred cCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCce
Confidence 3456678888988 89999999999999999997 5688776543 2222 334444443332211 12
Q ss_pred cEEEc-CCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCC----eeecCCCcccccch-hHHhhhcCCCcccc
Q 004753 531 RVDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVG-VSLLTKVGLKHLIA 603 (732)
Q Consensus 531 rv~~~-~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~-~s~l~~~gl~~~ia 603 (732)
.|+|+ +.++ ..+..++|+.+|||+-|+.. +.+.+++|||++|+| ||+ ++.+ .+-. |.+++++
T Consensus 341 ~v~~~~g~v~-~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~-------S~~~G~~~~---~~~g~lv 409 (460)
T cd03788 341 PVRYLYRSLP-REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL-------SEFAGAAEE---LSGALLV 409 (460)
T ss_pred eEEEEeCCCC-HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE-------eccccchhh---cCCCEEE
Confidence 35555 5555 78999999999999999988 449999999999999 554 2222 1111 3445554
Q ss_pred --CCHHHHHHHHHHhhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 004753 604 --KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLEST 652 (732)
Q Consensus 604 --~~~~~y~~~a~~l~~d~-~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~ 652 (732)
.|.+++++...++.+++ +.++.+.++.++.+. -||...|+..+...
T Consensus 410 ~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~~ 458 (460)
T cd03788 410 NPYDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLDD 458 (460)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHh
Confidence 58999999888888854 677777777777753 37999998876543
No 202
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=1.4e-08 Score=85.50 Aligned_cols=98 Identities=39% Similarity=0.622 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 226 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~ 226 (732)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++++++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35566666666777777777777777766666666777777777777777777777777777776666777777777777
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 004753 227 GSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 227 g~~~eA~~~~~~al~l~p 244 (732)
|++++|..+++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777766655
No 203
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.93 E-value=2.4e-08 Score=89.07 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNL 185 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 185 (732)
+.++.+|..+...|++++|++.|++++..+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777777777777777777777777777655 4577777778888888888888888777776664 5677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 186 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 186 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
|.++...|++++|+.+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 7788888888888888888887777765543
No 204
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.93 E-value=3.2e-08 Score=102.92 Aligned_cols=173 Identities=21% Similarity=0.238 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERP--M----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 75 (732)
++.|...|..|...+++++|.+.|.++....- + -..++...+.+|.+. ++++|+.+|++++.+.-... ....
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 35677788899999999999999999876421 1 245667777777666 99999999999987654333 2334
Q ss_pred HHHHHHHhhhhHhhc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 004753 76 MAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWH--Y----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---- 144 (732)
Q Consensus 76 la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 144 (732)
.+.++..+|.+|... |++++|+++|+++++.... . ...+..+|.++...|+|++|++.|++.....-++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 467777777777777 7788888888777754211 1 1234455555555555555555555554432110
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 145 ---AEACNNLGVIYKDRDNLDKAVECYQMALSIKP 176 (732)
Q Consensus 145 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 176 (732)
...+...+.+++..|+...|...+++....+|
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11223334444444444444444444444443
No 205
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.93 E-value=3.2e-08 Score=94.60 Aligned_cols=101 Identities=25% Similarity=0.305 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
+..|+.+|.++..+|++++|+..|++++...++ .+.++.++|.++...|++++|+.++++++++.|.....+.+++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 457899999999999999999999999988765 34689999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKK 102 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~ 102 (732)
++..+|..+...|++++|+..+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 999988888888887755554443
No 206
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.93 E-value=4.1e-08 Score=94.22 Aligned_cols=116 Identities=28% Similarity=0.436 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
+.+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.+++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4578999999999999999999999999887653 5789999999999999999999999999999998877777777
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 144 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (732)
++..++......+++++|+.. +++|++++++++..+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~---------------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEAL---------------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHH---------------------------HHHHHHHHHHHHhhCchh
Confidence 777766555555555544432 456666777777777664
No 207
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.92 E-value=2.8e-08 Score=107.82 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=100.7
Q ss_pred CCcEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 469 GFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 469 ~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
+.+++++.++. .|..+.+++++.++.++.|+.++++.+.+. ...+..+. +..|. .++|.|++.++ ..+++
T Consensus 197 ~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~~~~~~~~---~~~~~-~~~v~~~~~~~-~~~~~ 269 (365)
T TIGR00236 197 KRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLN--PVVREPLH---KHLGD-SKRVHLIEPLE-YLDFL 269 (365)
T ss_pred CCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCC--hHHHHHHH---HHhCC-CCCEEEECCCC-hHHHH
Confidence 45566666543 466789999999998888999988865431 23333333 23455 47899999876 67899
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHH
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 625 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~ 625 (732)
.++..+|+++-++ |+.++||+++|+|||+..... +|- -+...|..-++..|+++..+...++..|++.+.+
T Consensus 270 ~~l~~ad~vv~~S----g~~~~EA~a~g~PvI~~~~~~--~~~---e~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~ 340 (365)
T TIGR00236 270 NLAANSHLILTDS----GGVQEEAPSLGKPVLVLRDTT--ERP---ETVEAGTNKLVGTDKENITKAAKRLLTDPDEYKK 340 (365)
T ss_pred HHHHhCCEEEECC----hhHHHHHHHcCCCEEECCCCC--CCh---HHHhcCceEEeCCCHHHHHHHHHHHHhChHHHHH
Confidence 9999999998543 334799999999999964110 111 1122354445667999999988899999877766
Q ss_pred HHHH
Q 004753 626 LRMS 629 (732)
Q Consensus 626 ~r~~ 629 (732)
+++.
T Consensus 341 ~~~~ 344 (365)
T TIGR00236 341 MSNA 344 (365)
T ss_pred hhhc
Confidence 6543
No 208
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=98.91 E-value=4.2e-08 Score=108.42 Aligned_cols=171 Identities=18% Similarity=0.150 Sum_probs=121.2
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHHHHHHHHHHHHHc--------CC-CCCcE
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLEQL--------GL-ESLRV 532 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~-~~~~~~~~~~~~~~~~--------Gv-~~~rv 532 (732)
+..++++++|+ .|..+..++++.++++..|+ .+|++++.+. ++.+....+++.+++. |. +-.-|
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 55678899988 89999999999999999997 4577775443 2224445555555543 21 10114
Q ss_pred EEcCCcCCcHHHHHhcccccEEecCCCCCC-cccHHHhhhcCCC----eeecCCCcccccch--hHHhhhcCCCcccc--
Q 004753 533 DLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVP----CVTMAGSVHAHNVG--VSLLTKVGLKHLIA-- 603 (732)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g-~~t~~eal~~GvP----vvt~~g~~~~~r~~--~s~l~~~gl~~~ia-- 603 (732)
++++..-+.++..++|+.+||||-|+.+.| +.+++|||+||+| ||. |+.+ +..+ + +.+++
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-------S~~~G~~~~l---~-~gllVnP 406 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-------SEFAGAAQEL---N-GALLVNP 406 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-------eCCCCChHHh---C-CcEEECC
Confidence 555433337899999999999999999844 9999999999999 554 2222 1122 2 34443
Q ss_pred CCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 604 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 604 ~~~~~y~~~a~~l~~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
.|.++..+...++.+ +++.+....+.+++++.+ ||...|+..+...+
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 688888888777776 677888888888888653 79999998877654
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.91 E-value=1.6e-07 Score=92.66 Aligned_cols=153 Identities=23% Similarity=0.243 Sum_probs=95.9
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNL 151 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 151 (732)
..++..|......|++.+|++.|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|++ ..+++.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 345666777777888888888888888887764 4678888888888888888888888888887776 4577777
Q ss_pred HHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHH
Q 004753 152 GVIYKDRD-----------NLDKAVECYQMALSIKPNFSQS-----------------LNNLGVVYTVQGKMDAAAEMIE 203 (732)
Q Consensus 152 a~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~eA~~~l~ 203 (732)
|.+++.+. ...+|+..|+..++..|++..+ -..+|..|.+.|++..|+..++
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 77765432 3346777777777777776321 1223444555555555555555
Q ss_pred HHHHhCCCCH---HHHHHHHHHHHHcCCHH
Q 004753 204 KAIAANPTYA---EAYNNLGVLYRDAGSIS 230 (732)
Q Consensus 204 ~al~~~p~~~---~~~~~La~~~~~~g~~~ 230 (732)
.+++..|+.. +++..++..|.++|..+
T Consensus 166 ~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 166 YVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 5555555442 34445555555555554
No 210
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.91 E-value=1.7e-06 Score=85.49 Aligned_cols=203 Identities=30% Similarity=0.463 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAAL--ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
..+...+..+...+++..+...+...+. ..+.....+...+..+...+++.+++..+.+++...+...........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL-- 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH--
Confidence 4567788899999999999999999997 788889999999999999999999999999999988776322222222
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYNW---HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYK 156 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 156 (732)
+ ++...+++++|...+++++...| .....+...+..+...+++++|+..+.+++...+. ....+..++..+.
T Consensus 138 ---~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 138 ---G-ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred ---H-HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 1 56667899999999999988776 45667777777788999999999999999999999 6999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
..+++++|...+.+++...|.....+..++..+...++++++...+.+++...|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999997788888888888888899999999999999887
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4e-08 Score=98.42 Aligned_cols=123 Identities=22% Similarity=0.256 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004753 126 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMI 202 (732)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l 202 (732)
+.++-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35667777888889999999999999999999999999999999999999999999999999987653 467999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 203 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 203 ~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
+++++.+|++..+.+.||..++..|+|.+|...+++.++..|.+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999887654
No 212
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.90 E-value=6.7e-08 Score=92.76 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004753 109 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 185 (732)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 185 (732)
.....++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++...|++++|+.+++++++..|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 455678899999999999999999999999876653 46888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 186 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 186 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
|.++...|+...+...+++++. .+++|++++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 9999998888887776666543 26788999999999998863
No 213
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.90 E-value=3.2e-08 Score=107.07 Aligned_cols=260 Identities=17% Similarity=0.155 Sum_probs=148.3
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCchhhhccC--CCCeEEeccc-CCCC---CCCCCccEEEecCCCCCcCcccCCccce
Q 004753 368 KVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIG-YPNT---TGLPTIDYRITDSLADPPETKQKHVEEL 441 (732)
Q Consensus 368 ~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r--~Apvq~~~~g-~p~t---~g~~~~Dy~~~d~~~~p~~~~~~~~E~l 441 (732)
.+.+.|++.++||++-.+.++. -...++.+ ..|+.+.-.. .|+. ......|.+++.. +.........++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~--~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~~---~~~~~~~~~~~i 156 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVS--GPGGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAF---PGAFPEFFKPKA 156 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcch--hHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHhchheECc---hhhhhccCCCCE
Confidence 4677789999999987654432 22223222 2366443221 1110 0112334444321 111001223566
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 004753 442 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLVVKCKPFCCDSVRHRF 518 (732)
Q Consensus 442 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~ 518 (732)
..+|+..-. .... .........++.+..+++.+++. .|....++ +++.++... | -++++.|.+ . .+.+
T Consensus 157 ~vi~n~v~~-~~~~-~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g----~-~~~~ 227 (357)
T PRK00726 157 VVTGNPVRE-EILA-LAAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKG----D-LEEV 227 (357)
T ss_pred EEECCCCCh-Hhhc-ccchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCC----c-HHHH
Confidence 677754211 1000 00111112344455566666655 34333333 666555433 4 456667766 2 2555
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCccc---ccchhHHhhh
Q 004753 519 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTK 595 (732)
Q Consensus 519 ~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~s~l~~ 595 (732)
.+..+ .|+. |.|.+.+ .++...+..+|+++-+ +|+.|++|||++|+|||+.+..... ...-+.++..
T Consensus 228 ~~~~~-~~~~---v~~~g~~---~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~ 297 (357)
T PRK00726 228 RAAYA-AGIN---AEVVPFI---DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD 297 (357)
T ss_pred HHHhh-cCCc---EEEeehH---hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH
Confidence 55565 7773 8999985 4667778889999953 3568899999999999997643111 1112455666
Q ss_pred cCCCcccc-CC--HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 596 VGLKHLIA-KN--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 596 ~gl~~~ia-~~--~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
.|..-++. .| ++++.+...++.+|++.++.+++..++.. .-++..+.++.+++..+
T Consensus 298 ~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 298 AGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred CCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 67644443 34 89999999999999999999999887653 33577777777766543
No 214
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.90 E-value=1.9e-08 Score=108.44 Aligned_cols=242 Identities=17% Similarity=0.177 Sum_probs=135.6
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCchhhhcc--CCCCeEEeccc-CCCC---CCCCCccEEEecCCCCCcCccc--CCcc
Q 004753 368 KVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIG-YPNT---TGLPTIDYRITDSLADPPETKQ--KHVE 439 (732)
Q Consensus 368 ~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~--r~Apvq~~~~g-~p~t---~g~~~~Dy~~~d~~~~p~~~~~--~~~E 439 (732)
++.+.|++.++||++-.++.. +-...++. .-.|+-+.-.+ +|.- -.....|.+++ +..... ...+
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~--~~~~~~~a~~~~~p~v~~~~~~~~~~~~~~~~~~~~~vi~-----~s~~~~~~~~~~ 152 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYV--SGPVGLAAKLLGIPLVIHEQNAVPGLANRLLARFADRVAL-----SFPETAKYFPKD 152 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCc--chHHHHHHHHhCCCEEEEcCCCCccHHHHHHHHhhCEEEE-----cchhhhhcCCCC
Confidence 567789999999997654332 11122222 22365442111 1210 01122344443 222222 2246
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEE-EecCCCCCHHHH
Q 004753 440 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLV-VKCKPFCCDSVR 515 (732)
Q Consensus 440 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~-l~~~~~~~~~~~ 515 (732)
++..+|+.. ....... .+.+....++++..++.++++. .|...+++ +++..+ .+ ++..++ +.|.+ ..
T Consensus 153 ~~~~i~n~v-~~~~~~~-~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l-~~-~~~~~~~i~G~g-----~~ 223 (350)
T cd03785 153 KAVVTGNPV-REEILAL-DRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAEL-LR-KRLQVIHQTGKG-----DL 223 (350)
T ss_pred cEEEECCCC-chHHhhh-hhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHh-hc-cCeEEEEEcCCc-----cH
Confidence 677676532 1110000 0112223455566566665544 23222332 333333 22 455544 55554 34
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcc---cccchhHH
Q 004753 516 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSL 592 (732)
Q Consensus 516 ~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~s~ 592 (732)
+.+++.++++ .++|.|.|++ .++..+|..+|+++-+ +|++|++|||++|+|||+.+-... .....+..
T Consensus 224 ~~l~~~~~~~---~~~v~~~g~~---~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 224 EEVKKAYEEL---GVNYEVFPFI---DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred HHHHHHHhcc---CCCeEEeehh---hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 5666666665 3789999985 5778888889999953 357899999999999998653211 11112345
Q ss_pred hhhcCCCccccC---CHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 004753 593 LTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLM 634 (732)
Q Consensus 593 l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~ 634 (732)
+...|..-++.. |.+++.+....+..|++.+..+++..++..
T Consensus 295 l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 295 LVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 555666555542 799999999999999999999988877653
No 215
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.89 E-value=4.7e-08 Score=93.48 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 004753 91 GDINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAV 165 (732)
Q Consensus 91 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 165 (732)
..+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.++. ..++.++|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 33445555554444433333 3445666666666666666666666666554432 335566666666666666666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 166 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 166 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
.++++++++.|.....+.++|.++...|+... .+|........+++|+.+|++++..+|+
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~--------------------~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAI--------------------EQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHH--------------------HcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 66666666666665556666655553332110 1111111112234666677777777876
Q ss_pred Chh
Q 004753 246 SRN 248 (732)
Q Consensus 246 ~~~ 248 (732)
+..
T Consensus 153 ~~~ 155 (168)
T CHL00033 153 NYI 155 (168)
T ss_pred cHH
Confidence 553
No 216
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.88 E-value=8.2e-09 Score=82.56 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 244 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g-~~~eA~~~~~~al~l~p 244 (732)
++..+..+|.++...|++++|+.+|+++++.+|+++.+++++|.+|..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
No 217
>PLN02275 transferase, transferring glycosyl groups
Probab=98.88 E-value=1.3e-08 Score=110.64 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=98.9
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHH-----------------hHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCC
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARIL-----------------CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 529 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il-----------------~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~ 529 (732)
..++++..+++ .|..+.++++...+. +..|+.+|+++|+| +.++.+++.++++|++
T Consensus 212 ~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~- 286 (371)
T PLN02275 212 RPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG----PQKAMYEEKISRLNLR- 286 (371)
T ss_pred CcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC----CCHHHHHHHHHHcCCC-
Confidence 34456666776 788888998877664 23589999999988 6788999999999994
Q ss_pred CcEEEcC-CcCCcHHHHHhcccccEEecCCC----CCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC
Q 004753 530 LRVDLLP-LILLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 604 (732)
Q Consensus 530 ~rv~~~~-~~~~~~~~~~~~~~~Di~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~ 604 (732)
+ |+|.+ +++ .++....|+.+||++-+++ .+.+++++|||+||+|||+..... ..-+..-|-.+++..
T Consensus 287 ~-v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg------~~eiv~~g~~G~lv~ 358 (371)
T PLN02275 287 H-VAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC------IGELVKDGKNGLLFS 358 (371)
T ss_pred c-eEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCC------hHHHccCCCCeEEEC
Confidence 5 77765 566 6888999999999985432 234789999999999999854321 111222366677777
Q ss_pred CHHHHHHHHHHh
Q 004753 605 NEDEYVQLALQL 616 (732)
Q Consensus 605 ~~~~y~~~a~~l 616 (732)
+.+++++...+|
T Consensus 359 ~~~~la~~i~~l 370 (371)
T PLN02275 359 SSSELADQLLEL 370 (371)
T ss_pred CHHHHHHHHHHh
Confidence 888877666554
No 218
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.88 E-value=2.7e-08 Score=83.63 Aligned_cols=98 Identities=35% Similarity=0.577 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++++++++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 004753 193 GKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p 210 (732)
|++++|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777776655
No 219
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.87 E-value=7.8e-09 Score=82.68 Aligned_cols=66 Identities=41% Similarity=0.690 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCC
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSP 67 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 67 (732)
|.+|+.+|.+++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 6789999999999999999999999999999999999999999999999 79999999999999987
No 220
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.87 E-value=8.3e-08 Score=107.17 Aligned_cols=141 Identities=22% Similarity=0.204 Sum_probs=117.5
Q ss_pred CCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHh
Q 004753 107 NWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--------DNLDKAVECYQMALS 173 (732)
Q Consensus 107 ~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~ 173 (732)
.|.+..+| +..|.-+...++ ..+|+.+|+++++++|+++.++..++.++... .+..++.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45666654 445555555444 78999999999999999999999888877553 234566677777666
Q ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 174 I--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 174 ~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
+ .+.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4 777788999999999999999999999999999999 5889999999999999999999999999999999875
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=98.87 E-value=1.5e-07 Score=99.96 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=126.2
Q ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhhhhH--hhcCCHHHHHHHHHHHHHhCCCCH
Q 004753 40 CNMGVIYKNRG---DLESAIACYERCL---AVSPNFEIAKNNMAIALTDLGTKV--KLEGDINQGVAYYKKALYYNWHYA 111 (732)
Q Consensus 40 ~~lg~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~lg~~~--~~~g~~~~A~~~~~~al~~~p~~~ 111 (732)
+..|...+..+ ..+.|+.+|.+++ .++|++..++..++.++......- ....+..+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 66677666555 3568999999999 999999999888888877653211 134566778888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 190 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 190 (732)
.++..+|.++...++++.|...|++|+.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888765443333222 33
Q ss_pred HcCCHHHHHHHHHHH
Q 004753 191 VQGKMDAAAEMIEKA 205 (732)
Q Consensus 191 ~~g~~~eA~~~l~~a 205 (732)
.....++|++.|-+-
T Consensus 419 ~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 419 VPNPLKNNIKLYYKE 433 (458)
T ss_pred cCCchhhhHHHHhhc
Confidence 445566777666553
No 222
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.87 E-value=3.8e-09 Score=96.90 Aligned_cols=129 Identities=14% Similarity=0.223 Sum_probs=87.2
Q ss_pred CcEEEecCCC--CcCCHHHHH-HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 470 FITFGSFNNL--AKITPKVLQ-VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 470 ~~~f~~~~~~--~K~~~~~~~-~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
.++||.+++. .|....+++ +|.++.++.|+..|.+.|.+. + ++++. ..++|.|.|++ +++..
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~--~----~l~~~------~~~~v~~~g~~---~e~~~ 66 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP--D----ELKRL------RRPNVRFHGFV---EELPE 66 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCH------HHCTEEEE-S----HHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH--H----HHHHh------cCCCEEEcCCH---HHHHH
Confidence 4678999987 477888999 999999999999999998742 1 23332 24689999997 47899
Q ss_pred hcccccEEecCCCC--CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcC
Q 004753 547 AYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD 619 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d 619 (732)
.++.+||++.|+.. +.+++++|+|++|+|||+.... ...+....|..-++..|.+++++...+|..|
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG------AEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH------CHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc------hhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 99999999999875 3467999999999999995541 1223333455557789999999999998876
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7.1e-08 Score=96.66 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECY 168 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 168 (732)
+.++-+.-++.-+..+|++.+.|..||.+|..+|+++.|...|.+++++.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46677788888899999999999999999999999999999999999999999999999999887653 567899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004753 169 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 169 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 213 (732)
+++++++|.+..+...||..++.+|+|.+|+..++..++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999987653
No 224
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.85 E-value=1.4e-06 Score=94.17 Aligned_cols=240 Identities=15% Similarity=0.182 Sum_probs=174.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH-----HHHH-------H-------------------------
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAE-----AYCN-------M------------------------- 42 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~-----a~~~-------l------------------------- 42 (732)
-.|..||..|...|.+++|...|++++..--. ... +.+. +
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 35788999999999999999999999763111 000 0000 0
Q ss_pred -------------------------HHHHHHCCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHH
Q 004753 43 -------------------------GVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 96 (732)
Q Consensus 43 -------------------------g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A 96 (732)
-.+-+..|+..+-+..|..|++ .+|... .-..+.++..++..|...|+.+.|
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcHHHH
Confidence 0111122344444444544443 233321 122345667788899999999999
Q ss_pred HHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------CHHHHHHHHHH
Q 004753 97 VAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------------------CAEACNNLGVI 154 (732)
Q Consensus 97 ~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~ 154 (732)
...|+++.+..-.. ..+|...|..-....+++.|++++++|...-.. +..+|..++.+
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 99999999875432 568999999999999999999999999865221 24567777888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH---HHHcCCH
Q 004753 155 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVL---YRDAGSI 229 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~~~~La~~---~~~~g~~ 229 (732)
....|-++.....|++.+.+.--.|....|.|..+....-+++|.+.|++.+.+. |.-.++|...-.- -+.-.+.
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 8888999999999999999999999999999999999999999999999999885 4445555542222 2223478
Q ss_pred HHHHHHHHHHHhhCC
Q 004753 230 SLAIDAYEQCLKIDP 244 (732)
Q Consensus 230 ~eA~~~~~~al~l~p 244 (732)
+.|...|++|++..|
T Consensus 567 EraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 567 ERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999888
No 225
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.84 E-value=1.7e-07 Score=87.17 Aligned_cols=117 Identities=23% Similarity=0.188 Sum_probs=86.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 004753 123 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 196 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 196 (732)
..++...+...+++.++.+|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+...++.++..+|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677777777777777777777 4566777888888888888888888888776544 336677888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 197 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 197 eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
+|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888865 23333445677778888888888888888888764
No 226
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=3.8e-06 Score=87.83 Aligned_cols=234 Identities=12% Similarity=0.112 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
.|...|.--..++++..|...|++|+..+..+...|...+.+-++......|...+.+|+.+-|.-...|+.....--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE-- 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE-- 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH--
Confidence 466677777788999999999999999999999999999999999999999999999999999987665554433222
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 163 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 163 (732)
..|+...|.+.|++-++..|+ ..+|......-.+.++.+.|...|++.+-.+|+ ...|...+..-.+.|+..-
T Consensus 153 -----~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 153 -----MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred -----HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHH
Confidence 345778888888888877775 345555555556666666666666666666654 4455555555555566555
Q ss_pred HHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHH---------------------------------------
Q 004753 164 AVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEM--------------------------------------- 201 (732)
Q Consensus 164 A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~--------------------------------------- 201 (732)
|...|++|++...++. ..+...|..-..++.++.|.-.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 6666655555433321 1223333333333444444333
Q ss_pred -----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 202 -----IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 202 -----l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
|++.+..+|-+.++|+.+-.+....|+.+.-.+.|++|+..-|-.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA 355 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch
Confidence 444555567777777777777777888888888888888776653
No 227
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=2.2e-07 Score=87.59 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
.++..|..|-..|-+.-|..-|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|...++++|.+.-++.+.+.+++.
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY- 145 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY- 145 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-
Confidence 3455555555555555555556666666666666666666666666666666666666666666554444443333333
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYA 111 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~ 111 (732)
-|++.-|.+-+.+-.+.+|+++
T Consensus 146 ------~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 146 ------GGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ------cCchHhhHHHHHHHHhcCCCCh
Confidence 3355555555555555555554
No 228
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.83 E-value=1.9e-07 Score=86.83 Aligned_cols=118 Identities=26% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC
Q 004753 49 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEML 125 (732)
Q Consensus 49 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g 125 (732)
.++..++...+++.++..|+.... ..+.+.++..+...|++++|...|++++...|+. ..+.+.++.++...|
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya----~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYA----ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 444455544555555554444211 1223334444444555555555555555544332 224455555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 126 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 171 (732)
Q Consensus 126 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 171 (732)
++++|+..++. +.-.+-.+.++..+|.++...|++++|+..|+++
T Consensus 100 ~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 100 QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55555555544 2222333445555555666666666666555554
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.83 E-value=1.2e-07 Score=95.54 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=158.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAAL----ERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~----~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
+-.+..+..++|.|++++..--..+. .+. ...+++.+++..+....++.+++.+.+-.+.+....+. ..-+.
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq 123 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQ 123 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccch
Confidence 33455566667777766655433332 211 23577888888888888888888877777765332220 00012
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNW--HY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--------- 143 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------- 143 (732)
....++..+.-.+.+++++++|+++++... ++ -.++..+|.++....++++|.-+..+|.++-..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 222233344445577888888888877632 22 346777888888888888888887777776221
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C-
Q 004753 144 -CAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP----T- 211 (732)
Q Consensus 144 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p----~- 211 (732)
...+++.++..+..+|+...|.++.+++.++. +.......-+|.+|...|+.+.|..-|+++..... .
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm 283 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM 283 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
Confidence 13456677777778888888888888777652 22345666778888888888888888877765421 1
Q ss_pred -CHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCCCC----hhHHHHHHHHHhhhccCCcHHHH
Q 004753 212 -YAEAYNNLGVLYRDAGSIS-----LAIDAYEQCLKIDPDS----RNAGQNRLLAMNYINEGHDDKLF 269 (732)
Q Consensus 212 -~~~~~~~La~~~~~~g~~~-----eA~~~~~~al~l~p~~----~~a~~~~~la~~~~~~~~~~~a~ 269 (732)
..+++...+++.....-.. .|++.-++++++...- ......-.++..|-..|..++.-
T Consensus 284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHH
Confidence 2345555566555443333 3777777776664432 12223344666666666555433
No 230
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.82 E-value=3.4e-09 Score=105.73 Aligned_cols=228 Identities=13% Similarity=0.033 Sum_probs=133.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhh
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 85 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 85 (732)
-..|..|+.+|+|++|+.+|.+++..+|.++..+.+.+.+|+++..|..|...++.++.++..+..+ |.+.+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA-------YSRR~~ 173 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA-------YSRRMQ 173 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH-------HHHHHH
Confidence 3456777777777777777777777777777777777777777777777777777777766544333 333333
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHHH
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA---------CNNLGVIYK 156 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~ 156 (732)
.....|+..+|.+-++.++++.|++.+....++.+-. ..++. . +.+..|....+ ...-|..+.
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~-I---~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fs 245 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK-I---ATKSTPGFTPARQGMIQILPIKKPGYKFS 245 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh-H---HhhcCCCCCccccchhhhccccCcchhhh
Confidence 3444457777777777777777776554433333221 11111 0 11111111111 112244455
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
..|.++.++.++-..+....++...-.+ +..+.+..++++|+.-..+++..+|........-+.+-.-.|...++...+
T Consensus 246 k~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~ 324 (536)
T KOG4648|consen 246 KKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTK 324 (536)
T ss_pred hhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcch
Confidence 5666666666666555444443333333 556666677777777777776666655544444455555556667777777
Q ss_pred HHHHhhCCCChhH
Q 004753 237 EQCLKIDPDSRNA 249 (732)
Q Consensus 237 ~~al~l~p~~~~a 249 (732)
+.++.+.|.+..+
T Consensus 325 ~T~~~~~P~~~~~ 337 (536)
T KOG4648|consen 325 QTAVKVAPAVETP 337 (536)
T ss_pred hheeeeccccccc
Confidence 7777777766544
No 231
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.81 E-value=1.5e-07 Score=105.12 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Q 004753 91 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--------KFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDN 160 (732)
Q Consensus 91 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~ 160 (732)
++..+|+.+|+++++++|+++.++..++.++.... +..++.+..++++.+ ++..+.++..+|..+...|+
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 45889999999999999999999999888775542 345666777776664 77778899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 215 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 215 (732)
+++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++..
T Consensus 436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 9999999999999999 58899999999999999999999999999999998753
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=98.80 E-value=2e-07 Score=98.91 Aligned_cols=148 Identities=11% Similarity=0.060 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 004753 92 DINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 159 (732)
Q Consensus 92 ~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 159 (732)
..+.|+.+|.+++ +++|.++.+|..++.++... .+..+|.+..+++++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888899999 88888898888888887654 23456777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 004753 160 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQ 238 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~-~~~~g~~~eA~~~~~~ 238 (732)
+++.|...|++++.++|+.+.+++..|.++...|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 777777777777777777777777777777777777777777777777777654433222222 2233445566665544
Q ss_pred H
Q 004753 239 C 239 (732)
Q Consensus 239 a 239 (732)
-
T Consensus 433 ~ 433 (458)
T PRK11906 433 E 433 (458)
T ss_pred c
Confidence 3
No 233
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.80 E-value=3.8e-08 Score=107.44 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEcCCcCCcHHHHHhcccccEEecCCC
Q 004753 481 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 559 (732)
Q Consensus 481 K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~-Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 559 (732)
++.+.+++++..+.+..|+.++++.+.+ ...++.+++...+. |+. +.+.. .+...+|+.+|+++-++
T Consensus 202 ~~~~~l~~a~~~l~~~~~~~~~ii~~~~---~~~~~~~~~~~~~~~~~~---v~~~~-----~~~~~~~~~aDl~v~~s- 269 (380)
T PRK00025 202 RLLPPFLKAAQLLQQRYPDLRFVLPLVN---PKRREQIEEALAEYAGLE---VTLLD-----GQKREAMAAADAALAAS- 269 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC---hhhHHHHHHHHhhcCCCC---eEEEc-----ccHHHHHHhCCEEEECc-
Confidence 4567888998888888899999888642 14567777777777 663 54432 35677888899999753
Q ss_pred CCCcccHHHhhhcCCCeeecCCCcccccchhHHh---hhcC----------CCcccc--CCHHHHHHHHHHhhcCHHHHH
Q 004753 560 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL---TKVG----------LKHLIA--KNEDEYVQLALQLASDVTALA 624 (732)
Q Consensus 560 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l---~~~g----------l~~~ia--~~~~~y~~~a~~l~~d~~~~~ 624 (732)
|++++|||++|+|||+.+.-..-....+..+ ...| .++++. .|+++..+...++..|++.++
T Consensus 270 ---G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 270 ---GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred ---cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 6777899999999998643221111111111 1112 244443 467899999999999999999
Q ss_pred HHHHHHHHH
Q 004753 625 NLRMSLRDL 633 (732)
Q Consensus 625 ~~r~~lr~~ 633 (732)
.+++..++.
T Consensus 347 ~~~~~~~~~ 355 (380)
T PRK00025 347 ALLEGFTEL 355 (380)
T ss_pred HHHHHHHHH
Confidence 999887543
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.3e-07 Score=98.01 Aligned_cols=120 Identities=23% Similarity=0.233 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004753 114 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193 (732)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 193 (732)
...-|..|++.|+|..|...|++++..-.... .-+.++..... ++. ..++.|++.++.+++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~k-----~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--ALK-----LACHLNLAACYLKLK 271 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HHH-----HHHhhHHHHHHHhhh
Confidence 34557777888888888888888776422110 00001000000 000 124555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 194 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 194 ~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
+|.+|+..++++|..+|++..+++..|.++..+|+++.|+..|+++++++|+|..+...
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555544433
No 235
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.77 E-value=7.1e-08 Score=104.57 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=159.2
Q ss_pred hhHHhccccC-CcEEEEEEeccccCChhh-HHHHHH-HhhhCCeEEEccCCC----------HHHHHHHHHhCCCcEEEe
Q 004753 317 IEAPLVYHDY-QNYKVVVYSAVVKADAKT-IRFREK-VMKKGGIWRDIYGID----------EKKVAAMVREDKIDILVE 383 (732)
Q Consensus 317 ~~~~l~~~d~-~~fev~~y~~~~~~d~~~-~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~i~~d~~Dilvd 383 (732)
+.+++..... ..+++.++.++...|... ..+... .....+..-.+.+.+ -.++.+.|++.++||++-
T Consensus 15 ~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~ 94 (363)
T cd03786 15 LAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLV 94 (363)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3344444433 378888777765544322 111211 111122233333321 145677788999999964
Q ss_pred CCCCCCCCchhhhccCCC--CeEEecccCCCC--CCCCC--c---cEEEecCCCCCcCcccCC-------ccceEEcCCC
Q 004753 384 LTGHTANNKLGMMACQPA--PVQVTWIGYPNT--TGLPT--I---DYRITDSLADPPETKQKH-------VEELIRLPEC 447 (732)
Q Consensus 384 l~g~t~~~~~~~~a~r~A--pvq~~~~g~p~t--~g~~~--~---Dy~~~d~~~~p~~~~~~~-------~E~l~~lp~~ 447 (732)
. |++...-...++.+.. |+-....|.. | .+.+. . =..++|.++.+.+....+ .+++..+++.
T Consensus 95 ~-g~~~~~~~~~~aa~~~~iPvv~~~~g~~-s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~ 172 (363)
T cd03786 95 L-GDTNETLAAALAAFKLGIPVAHVEAGLR-SFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNT 172 (363)
T ss_pred e-CCchHHHHHHHHHHHcCCCEEEEecccc-cCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECch
Confidence 3 2222112233333333 6554333311 1 01111 0 011344444444332221 3456666654
Q ss_pred ccc---cCCCCC-CCCCCCCCCCCCCCcEEEecCCC-----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 004753 448 FLC---YTPSPE-AGPVCPTPALTNGFITFGSFNNL-----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 518 (732)
Q Consensus 448 ~~~---~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~ 518 (732)
.+. +.+... ....+...+++++.+++.++++. .|..+.+++++.++... +..+++.+.+ ..+..+
T Consensus 173 v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~----~~~~~l 246 (363)
T cd03786 173 MIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHP----RTRPRI 246 (363)
T ss_pred HHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCC----ChHHHH
Confidence 322 111111 11111233455666666677765 35566777777666433 4555554444 556788
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCC
Q 004753 519 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 598 (732)
Q Consensus 519 ~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl 598 (732)
++.+.+.|...++|.|++... ..++..+|..||+++-++. +.+.||+++|+|||+..... ..-.+...|.
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ad~~v~~Sg----gi~~Ea~~~g~PvI~~~~~~-----~~~~~~~~g~ 316 (363)
T cd03786 247 REAGLEFLGHHPNVLLISPLG-YLYFLLLLKNADLVLTDSG----GIQEEASFLGVPVLNLRDRT-----ERPETVESGT 316 (363)
T ss_pred HHHHHhhccCCCCEEEECCcC-HHHHHHHHHcCcEEEEcCc----cHHhhhhhcCCCEEeeCCCC-----ccchhhheee
Confidence 888888887457899998765 5677788999999986652 35789999999999975321 1112333466
Q ss_pred CccccCCHHHHHHHHHHhhcCHHHHHHHH
Q 004753 599 KHLIAKNEDEYVQLALQLASDVTALANLR 627 (732)
Q Consensus 599 ~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 627 (732)
.-++..|.++.++....+.+|+..+..++
T Consensus 317 ~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 317 NVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 55555678999988889999986665553
No 236
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.76 E-value=9.4e-08 Score=102.94 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=99.3
Q ss_pred CCCCCCcEEEecCCC--CcCCHHH-HHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 004753 465 ALTNGFITFGSFNNL--AKITPKV-LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 541 (732)
Q Consensus 465 ~~~~~~~~f~~~~~~--~K~~~~~-~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~ 541 (732)
+++++.++++++++. .|....+ .+++.++.. ++.++++++++ ...+.+++.+++.|+ .++|.|. . .
T Consensus 174 ~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~----~~~~~l~~~~~~~~l-~~~v~~~-~---~ 242 (348)
T TIGR01133 174 GLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGK----NDLEKVKNVYQELGI-EAIVTFI-D---E 242 (348)
T ss_pred CCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCc----chHHHHHHHHhhCCc-eEEecCc-c---c
Confidence 455667778877655 3332222 244444433 23444443322 123678888888888 4666665 2 2
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCccc--ccchhHHhhhcCCCcccc-C--CHHHHHHHHHHh
Q 004753 542 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA-K--NEDEYVQLALQL 616 (732)
Q Consensus 542 ~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~s~l~~~gl~~~ia-~--~~~~y~~~a~~l 616 (732)
+...+|..+|+++-+ +|++|++|||++|+|||+..-.... .+..+.++...|..-++. . +.+++++...++
T Consensus 243 -~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 -NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred -CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 567778889999953 4677899999999999986432211 122334666655444442 2 489999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 004753 617 ASDVTALANLRMSLRDLM 634 (732)
Q Consensus 617 ~~d~~~~~~~r~~lr~~~ 634 (732)
..|++.++++++..++..
T Consensus 319 l~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 319 LLDPANLEAMAEAARKLA 336 (348)
T ss_pred HcCHHHHHHHHHHHHhcC
Confidence 999999999998887653
No 237
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.74 E-value=2.8e-08 Score=82.94 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 158 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 235 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~ 235 (732)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+...++.+|.++.++|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666666663 234555566666666666666666666 555555556666666666666666666666
Q ss_pred HHHH
Q 004753 236 YEQC 239 (732)
Q Consensus 236 ~~~a 239 (732)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6553
No 238
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.73 E-value=4.4e-08 Score=77.26 Aligned_cols=65 Identities=31% Similarity=0.524 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 70 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 70 (732)
+.+|..++..|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999864
No 239
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.72 E-value=1.8e-07 Score=110.06 Aligned_cols=180 Identities=16% Similarity=0.135 Sum_probs=125.8
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-HHHHHHHHHHHHc--------CCC-CC-
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-SVRHRFLSTLEQL--------GLE-SL- 530 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~-~~~~~~~~~~~~~--------Gv~-~~- 530 (732)
.+..++++++|+ .|..+..++++.++|+..|+ .+|++++.|.... +..+.+++.+.+. |.. -.
T Consensus 263 ~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p 342 (726)
T PRK14501 263 RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP 342 (726)
T ss_pred CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce
Confidence 355678899999 89999999999999999996 6788887553222 3334444444332 221 11
Q ss_pred cEEEcCCcCCcHHHHHhcccccEEecCCCCCC-cccHHHhhhc-----CCCeeecCCCcccccchhHHhhhcCCCccc--
Q 004753 531 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYM-----GVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-- 602 (732)
Q Consensus 531 rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g-~~t~~eal~~-----GvPvvt~~g~~~~~r~~~s~l~~~gl~~~i-- 602 (732)
.+.|.+.++ .++..++|+.+||||-|+-+.| +.+++|||++ |+|||+-... ++..|. ..++
T Consensus 343 v~~~~~~~~-~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G------~~~~l~----~~llv~ 411 (726)
T PRK14501 343 IHYFYRSLP-FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAG------AAAELA----EALLVN 411 (726)
T ss_pred EEEEeCCCC-HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccc------hhHHhC----cCeEEC
Confidence 234556666 7899999999999999999854 9999999999 5567752211 111111 1333
Q ss_pred cCCHHHHHHHHHHhhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 004753 603 AKNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 661 (732)
Q Consensus 603 a~~~~~y~~~a~~l~~d~-~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 661 (732)
..|.++.++...++.+++ +.+....+.+++++. -||...++..+.+.|.++|...-
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 368888888888888754 444444456676653 37999999999999999997653
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=98.72 E-value=2e-07 Score=85.60 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004753 141 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 220 (732)
Q Consensus 141 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La 220 (732)
.++.-+..+..|.-++..|++++|...|+-....++.+++.+..||.++..+++|++|+..|..+..+.++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44445566777777777888888888888777778888888888888888888888888888888888777777788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 221 VLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 221 ~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
.||..+|+.++|+.+|+.+++ .|.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 888888888888888887777 3443
No 241
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.72 E-value=4.6e-08 Score=77.18 Aligned_cols=63 Identities=32% Similarity=0.503 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 184 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 184 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
.+|..+...|++++|++.|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 355666666666666666666666666666666666666666666666666666666666654
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.3e-07 Score=95.01 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=113.3
Q ss_pred HHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004753 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 154 (732)
Q Consensus 75 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (732)
..+...-.-|+.+++.|+|..|...|++++..-.... .-+.++.... .++. ..++.|++.+
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~--~~~k-----~~~~lNlA~c 266 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA--EALK-----LACHLNLAAC 266 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH--HHHH-----HHHhhHHHHH
Confidence 3345556678888899999999999999886532211 0011111111 1111 3467888889
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-H
Q 004753 155 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-I 233 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA-~ 233 (732)
+.++++|.+|+....++|.++|++..+++..|.++..+|+|+.|+..|++++++.|+|..+...|..+-.+..++.+. .
T Consensus 267 ~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 267 YLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888888888888777666554 7
Q ss_pred HHHHHHHhhCCC
Q 004753 234 DAYEQCLKIDPD 245 (732)
Q Consensus 234 ~~~~~al~l~p~ 245 (732)
+.|.+++..-+.
T Consensus 347 k~y~~mF~k~~~ 358 (397)
T KOG0543|consen 347 KMYANMFAKLAE 358 (397)
T ss_pred HHHHHHhhcccc
Confidence 888888876554
No 243
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=8.9e-07 Score=83.56 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=130.1
Q ss_pred HHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004753 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 155 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (732)
.+..++..|..|...|-+.-|.--|.+++.+.|+.+++++.+|..+...|+++.|.+.|+..++++|.+..+..|.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 46677788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHcCCHHHHH------------------------------HHHH
Q 004753 156 KDRDNLDKAVECYQMALSIKPNFSQ--SLNNLGVVYTVQGKMDAAA------------------------------EMIE 203 (732)
Q Consensus 156 ~~~g~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~eA~------------------------------~~l~ 203 (732)
+.-|++.-|.+-+.+-.+.+|++|. .|..+-. ..-+..+|. ..++
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~ 220 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLME 220 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHH
Confidence 9999999999999999999998875 2222211 111222222 1222
Q ss_pred HHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 204 KAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 204 ~al~~~p~~-------~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
++.+...++ .++++.||+.|...|+.++|...|+-++..
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 222222222 356788888888899999998888888764
No 244
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.70 E-value=8.6e-07 Score=89.13 Aligned_cols=271 Identities=15% Similarity=0.193 Sum_probs=176.7
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCchhhhc-cCCCCeEEecccCCCCC-------------CC------------------
Q 004753 369 VAAMVREDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWIGYPNTT-------------GL------------------ 416 (732)
Q Consensus 369 ~~~~i~~d~~Dilvdl~g~t~~~~~~~~a-~r~Apvq~~~~g~p~t~-------------g~------------------ 416 (732)
..+.|-+--+||.||.+|+.. ..++|. +|-.|| ++|..||.-+ |+
T Consensus 142 ~~Eai~r~~Pdi~IDtMGY~f--s~p~~r~l~~~~V-~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~ 218 (465)
T KOG1387|consen 142 AFEAIIRFPPDIFIDTMGYPF--SYPIFRRLRRIPV-VAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQS 218 (465)
T ss_pred HHHHHHhCCchheEecCCCcc--hhHHHHHHccCce-EEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHh
Confidence 446677889999999999886 456665 444454 5667788621 11
Q ss_pred --CCccEEEecCCCCCcCcccCCccceEEcCCCccccCCCCCCCCCCCCCC-CCCCCcEEEecC--CCCcCCHHHHHHHH
Q 004753 417 --PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPA-LTNGFITFGSFN--NLAKITPKVLQVWA 491 (732)
Q Consensus 417 --~~~Dy~~~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~--~~~K~~~~~~~~~~ 491 (732)
...|++++..-- ...+--.++.--.|.+.|.|.... ....... .....++..+++ |+.|.|+ .+++.+
T Consensus 219 ~G~~ad~vm~NssW-----T~nHI~qiW~~~~~~iVyPPC~~e-~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~A 291 (465)
T KOG1387|consen 219 AGSKADIVMTNSSW-----TNNHIKQIWQSNTCSIVYPPCSTE-DLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFA 291 (465)
T ss_pred ccccceEEEecchh-----hHHHHHHHhhccceeEEcCCCCHH-HHHHHhcccCCcceEEEEEeecCcccccH-HHHHHH
Confidence 013444443100 001111122222333445544321 1111111 123344555665 6699999 888888
Q ss_pred HHHhHcC------CcEEEEecCCC--CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCC-CCC
Q 004753 492 RILCAVP------NSRLVVKCKPF--CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-YAG 562 (732)
Q Consensus 492 ~il~~~p------~~~l~l~~~~~--~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~-~~g 562 (732)
--+...| +..|+++|.-. .+......++.+++.+.|+ +.|.|.--+| .++...+++-|-+-+.+-- ...
T Consensus 292 l~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHF 369 (465)
T KOG1387|consen 292 LYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHF 369 (465)
T ss_pred HHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCC-HHHHHHHhccceeehhhhhhhhc
Confidence 6666554 58888887432 3444556788899999995 6699999888 7899999999999998874 378
Q ss_pred cccHHHhhhcCCCeee-cCCCcccccchhHHhhhcC-CCccccCCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCC
Q 004753 563 TTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLTKVG-LKHLIAKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPV 639 (732)
Q Consensus 563 ~~t~~eal~~GvPvvt-~~g~~~~~r~~~s~l~~~g-l~~~ia~~~~~y~~~a~~l~~-d~~~~~~~r~~lr~~~~~~~~ 639 (732)
|.++.|+|++|+=.|+ -.|...-.=|.. -.| ..++.+.|.+||++...+... |.+.+..+|...|..+.+
T Consensus 370 GIsVVEyMAAGlIpi~h~SgGP~lDIV~~----~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~R--- 442 (465)
T KOG1387|consen 370 GISVVEYMAAGLIPIVHNSGGPLLDIVTP----WDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLAR--- 442 (465)
T ss_pred chhHHHHHhcCceEEEeCCCCCceeeeec----cCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH---
Confidence 9999999999975554 333321111111 123 357889999999999988886 777789999999887653
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 004753 640 CDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 640 ~~~~~~~~~~e~~~~~~~~ 658 (732)
|+...|-++++..+..+.+
T Consensus 443 FsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 443 FGELKFDKDWENPICKLLE 461 (465)
T ss_pred hhHHHHHHhHhHHHHHhhc
Confidence 7888999999988877663
No 245
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.8e-07 Score=89.13 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 171 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 171 (732)
+|.+|++++..-.+.+|.+...+..+|.+|+...+|..|..+|++.-.+.|.........+..+++.+.+..|+......
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~ 104 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLL 104 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 55566666665555666555566666666666666666666666666666665555555566666666666666555444
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 172 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 172 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
.....-.......-+-+....+++..+....++.- ..+.+....+.|-+.++.|++++|.+-|+.+++...-++-..+
T Consensus 105 ~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAY 182 (459)
T KOG4340|consen 105 LDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAY 182 (459)
T ss_pred cCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHH
Confidence 32211111223333444445555555554444321 1134555566666666666666666666666665544443333
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHHHhhhc
Q 004753 252 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLY 283 (732)
Q Consensus 252 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 283 (732)
+ +++.+...++++.++....+..++-.+..
T Consensus 183 n--iALaHy~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 183 N--LALAHYSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred H--HHHHHHhhhhHHHHHHHHHHHHHhhhhcC
Confidence 3 44555555666665555555555444333
No 246
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.70 E-value=9.7e-08 Score=103.92 Aligned_cols=250 Identities=17% Similarity=0.115 Sum_probs=141.9
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCC-chhhhccCC-CCeEEe----cccCCCC---CCCCCccEEEecCCCCCcCcccCC
Q 004753 367 KKVAAMVREDKIDILVELTGHTANN-KLGMMACQP-APVQVT----WIGYPNT---TGLPTIDYRITDSLADPPETKQKH 437 (732)
Q Consensus 367 ~~~~~~i~~d~~Dilvdl~g~t~~~-~~~~~a~r~-Apvq~~----~~g~p~t---~g~~~~Dy~~~d~~~~p~~~~~~~ 437 (732)
.++.+.|++.++|++|=.++ ...+ ++...+.+. -|+-+. -|.++.. .....+|.+++. .| .....|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~---~~-~e~~~~ 153 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAI---LP-FEKAFY 153 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhcc---CC-CcHHHH
Confidence 46788899999999997765 4433 232222211 144431 1333321 222345665542 22 222222
Q ss_pred c---cceEEcCCCccccCCC--CCCCCCCCCCCCCCCCcEEEecC--CC---CcCCHHHHHHHHHHHhHcCCcEEEEecC
Q 004753 438 V---EELIRLPECFLCYTPS--PEAGPVCPTPALTNGFITFGSFN--NL---AKITPKVLQVWARILCAVPNSRLVVKCK 507 (732)
Q Consensus 438 ~---E~l~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~ 507 (732)
. -+.....++.....+. +.....+...+++++..+++.+. |. .|+.+.++++...+.+..|+.++++.+.
T Consensus 154 ~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 154 QKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred HhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 2 1333333322111110 00000112234555655555542 43 4678889998888888899998866533
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCccccc
Q 004753 508 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 587 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r 587 (732)
+. ...+.+.+..+..|. ..+|.+.+. +....|..+|+++-++ |++|+|++++|+|+|....-..-+.
T Consensus 234 ~~---~~~~~~~~~~~~~~~-~~~v~~~~~-----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 234 NF---KRRLQFEQIKAEYGP-DLQLHLIDG-----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred Cc---hhHHHHHHHHHHhCC-CCcEEEECc-----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 21 234455555566666 357766543 2235777899999776 7777799999999888643322222
Q ss_pred chhHHh-h--hcCC----------Ccccc--CCHHHHHHHHHHhhcCH----HHHHHHHHHHHHHh
Q 004753 588 VGVSLL-T--KVGL----------KHLIA--KNEDEYVQLALQLASDV----TALANLRMSLRDLM 634 (732)
Q Consensus 588 ~~~s~l-~--~~gl----------~~~ia--~~~~~y~~~a~~l~~d~----~~~~~~r~~lr~~~ 634 (732)
..+..+ + .+++ +|++- -+++...+.+.+|..|+ +.++.+++.+++..
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 222221 1 2222 45553 36788888999999999 99988888887654
No 247
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.69 E-value=4.6e-08 Score=81.62 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 125 LKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 202 (732)
Q Consensus 125 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 202 (732)
|+++.|+.+++++++..|. +...++.+|.+++..|++++|+..+++ .+.++.+......+|.++..+|++++|++.|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555555442 233444455555555555555555555 4444444455555555555555555555555
Q ss_pred HH
Q 004753 203 EK 204 (732)
Q Consensus 203 ~~ 204 (732)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 248
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=5.9e-07 Score=91.47 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC---CHH
Q 004753 37 EAYCNMGVIY-KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH---YAD 112 (732)
Q Consensus 37 ~a~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~ 112 (732)
...+..|..+ +..|+|++|+..|++.++..|+... ...+++.+|.+|...|++++|+..|+++++..|+ .++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~----a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY----QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3344444433 3345555555555555555554421 1123334444444444555555555555544443 244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 145 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 145 (732)
+++.+|.++..+|++++|.+.|+++++..|++.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 555555555555555555555555555555544
No 249
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.66 E-value=4.1e-07 Score=98.94 Aligned_cols=161 Identities=16% Similarity=0.073 Sum_probs=105.1
Q ss_pred CCCCcEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 467 TNGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 467 ~~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
..+.+++|.++++. |.. +++..++.+..|+..|+|+|.+..... ... ... .++|.|+|.++ .++..
T Consensus 202 ~~~~~~i~y~G~l~~~~d---~~ll~~la~~~p~~~~vliG~~~~~~~-~~~------~~~--~~nV~~~G~~~-~~~l~ 268 (373)
T cd04950 202 ALPRPVIGYYGAIAEWLD---LELLEALAKARPDWSFVLIGPVDVSID-PSA------LLR--LPNVHYLGPKP-YKELP 268 (373)
T ss_pred cCCCCEEEEEeccccccC---HHHHHHHHHHCCCCEEEEECCCcCccC-hhH------hcc--CCCEEEeCCCC-HHHHH
Confidence 34567889999885 443 345566777889999999997611101 111 111 37899999987 68899
Q ss_pred HhcccccEEecCCCCC------CcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHh-hc
Q 004753 546 QAYSLMDISLDTFPYA------GTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQL-AS 618 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~------g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l-~~ 618 (732)
..++.+||++-|+..+ .++.++|+|++|+|||+.... .+....+..-+++.|.+++++...+. ..
T Consensus 269 ~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~--------~~~~~~~~~~~~~~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 269 AYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP--------EVRRYEDEVVLIADDPEEFVAAIEKALLE 340 (373)
T ss_pred HHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH--------HHHhhcCcEEEeCCCHHHHHHHHHHHHhc
Confidence 9999999999988532 245799999999999985422 22222232224457899999999884 44
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 619 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 619 d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
+...+...+ +. ..+ -++++..+..++...+
T Consensus 341 ~~~~~~~~~---~~-~~~--~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 341 DGPARERRR---LR-LAA--QNSWDARAAEMLEALQ 370 (373)
T ss_pred CCchHHHHH---HH-HHH--HCCHHHHHHHHHHHHH
Confidence 432222211 11 222 2688888888885544
No 250
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=6.7e-07 Score=91.05 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=93.1
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 004753 145 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 217 (732)
Q Consensus 145 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~ 217 (732)
....+..+..+ ...|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46667777765 56799999999999999999988 5799999999999999999999999999888774 78899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 004753 218 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 218 ~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 250 (732)
.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999877553
No 251
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.6e-05 Score=77.88 Aligned_cols=216 Identities=17% Similarity=0.129 Sum_probs=107.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH--------------HHHHHHhhCCCCHHHHH
Q 004753 9 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA--------------CYERCLAVSPNFEIAKN 74 (732)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~--------------~~~~al~~~p~~~~~~~ 74 (732)
.+.++..|+|.+++..-++.-... ........+...|+.+|++..-+. .+...++..........
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 345667899999988877765443 566777788888888887754333 22222221111000000
Q ss_pred ----HH--------HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004753 75 ----NM--------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 142 (732)
Q Consensus 75 ----~l--------a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 142 (732)
.+ ......-+.++...+++++|++...+. .+.++...--.++.++.+.+-|.+.+++..+++.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 00 001112234444555555555554442 2233333334445555555555555555554443
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004753 143 HCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 218 (732)
Q Consensus 143 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 218 (732)
+ ..+..||..+.. .+++.+|.-+|++.-+..+..+..++.++.++..+|++++|...++.++..++++++++.+
T Consensus 169 d--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 D--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred H--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 2 222223333222 2345555555555555455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHH
Q 004753 219 LGVLYRDAGSISLA 232 (732)
Q Consensus 219 La~~~~~~g~~~eA 232 (732)
+..+-...|+..++
T Consensus 247 liv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 247 LIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHhCCChHH
Confidence 55555555554433
No 252
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.64 E-value=7.9e-07 Score=95.12 Aligned_cols=122 Identities=23% Similarity=0.229 Sum_probs=111.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004753 115 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 194 (732)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 194 (732)
..+-.++...++++.|++.+++..+.+|+ +...++.++...++..+|++.++++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34455666778999999999999988875 566789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 195 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 195 ~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
++.|++..+++++..|++...|+.|+.+|..+|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999877744
No 253
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.63 E-value=1.1e-05 Score=87.33 Aligned_cols=230 Identities=14% Similarity=0.175 Sum_probs=187.3
Q ss_pred HHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 004753 11 VYSELMQYDTALGCYEKAAL-ERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 84 (732)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~-~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 84 (732)
+-...|+..+-+..|.+|++ .+|. ....|..+|..|...|+.+.|...|+++.+..-... ..++.++...|
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v---~dLa~vw~~wa 432 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV---EDLAEVWCAWA 432 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch---HHHHHHHHHHH
Confidence 33457888999999999987 4564 356899999999999999999999999998765543 35677888888
Q ss_pred hhHhhcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 004753 85 TKVKLEGDINQGVAYYKKALYYNWH------------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 146 (732)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (732)
..-....+++.|+++.+++...-.. ...+|..++.+....|-++.....|++.+.+.--.+.
T Consensus 433 emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq 512 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ 512 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH
Confidence 8888899999999999998764221 2346888899999999999999999999999888899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNNLGVV---YTVQGKMDAAAEMIEKAIAANPTY--AEAYNNL 219 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~---~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~L 219 (732)
...|.|..+....-+++|.+.|++.+.+. |.-.++|+..-.. -+..-+.+.|..+|+++++..|.. ..++...
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999985 4555566543332 233457899999999999998743 2456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 220 GVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 220 a~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
+.+...-|-...|+..|+++-..-
T Consensus 593 A~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 593 AKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcC
Confidence 888888999999999999987543
No 254
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.62 E-value=9.7e-07 Score=103.91 Aligned_cols=180 Identities=14% Similarity=0.060 Sum_probs=129.4
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE----EEEecCCC-CCHHHHHHHHHHHHHcC--CCC--Cc-----E
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTLEQLG--LES--LR-----V 532 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~l~~~~~-~~~~~~~~~~~~~~~~G--v~~--~r-----v 532 (732)
+..++.+++|+ .|..+..++++.++|+..|+.+ |+.++.+. .+.+..+++++.+.+.+ |.. .. |
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv 357 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPI 357 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCcee
Confidence 45577888988 8999999999999999999864 44344332 23355667777777764 421 11 3
Q ss_pred EEcC-CcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCC----eeecCCCcccccchhHHhhhcCCCcccc--C
Q 004753 533 DLLP-LILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLIA--K 604 (732)
Q Consensus 533 ~~~~-~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~s~l~~~gl~~~ia--~ 604 (732)
+++. .++ .++..++|+.+||||-|+-+ +-+.+.+|||+||+| +|. |+++.. -..+|...+++ .
T Consensus 358 ~~l~~~v~-~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~-~~~l~~~allVnP~ 428 (797)
T PLN03063 358 HHLDCSVD-FNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGA-GQSLGAGALLVNPW 428 (797)
T ss_pred EEecCCCC-HHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCc-hhhhcCCeEEECCC
Confidence 3333 344 68999999999999999999 558899999999998 443 333310 00123344443 6
Q ss_pred CHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 004753 605 NEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 660 (732)
Q Consensus 605 ~~~~y~~~a~~l~~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 660 (732)
|.++..+...++.+ +++.++...+.+++.+.+ +|...|++.+.+.+.+.+...
T Consensus 429 D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~---~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 429 NITEVSSAIKEALNMSDEERETRHRHNFQYVKT---HSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHHHHhhhh
Confidence 88888888888888 777877777777777654 589999999999999998654
No 255
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.62 E-value=1.3e-06 Score=87.14 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=80.1
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccc
Q 004753 472 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 551 (732)
Q Consensus 472 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~ 551 (732)
.+|.++. .|..+.+++++.++.+..|+.+++++|.+.. ...........+. .++|.+.+.++..++....+..+
T Consensus 109 ~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~----~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 182 (229)
T cd01635 109 FVGRLAP-EKGLDDLIEAFALLKERGPDLKLVIAGDGPE----REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAA 182 (229)
T ss_pred EEEeecc-cCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC----hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcC
Confidence 4554443 5999999999999999999999999987632 2333333556666 58999999975444555555669
Q ss_pred cEEecCCCC-CCcccHHHhhhcCCCeeecCCC
Q 004753 552 DISLDTFPY-AGTTTTCESLYMGVPCVTMAGS 582 (732)
Q Consensus 552 Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~ 582 (732)
||+|-|+.. +.+++++|||++|+|||+....
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcCCC
Confidence 999999877 5588999999999999996655
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=98.62 E-value=5.6e-07 Score=82.68 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 107 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 186 (732)
Q Consensus 107 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 186 (732)
.++..+..+..|.-++..|++++|...|+-....++.+...+..||.++..+++|++|+..|..+..+.++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34445667788888888899999999998888888888888888999999999999999999888888888888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 004753 187 VVYTVQGKMDAAAEMIEKAIA 207 (732)
Q Consensus 187 ~~~~~~g~~~eA~~~l~~al~ 207 (732)
.|+..+|+.++|+.+|+.++.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999998888887
No 257
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=1.2e-06 Score=77.68 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 186 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 186 (732)
+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +......++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34555555555555555555555555543222 345555555555555555555555555555555 444455555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 004753 187 VVYTVQGKMDAAAEMIEKAI 206 (732)
Q Consensus 187 ~~~~~~g~~~eA~~~l~~al 206 (732)
.++...|++++|++.+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555544
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.60 E-value=8.3e-06 Score=80.24 Aligned_cols=190 Identities=19% Similarity=0.187 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
++.||+.|...++.|++++|++.|+.+...+|. ...+...++.++++.+++++|+...++-+++.|.++.+ ..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----dY 109 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----DY 109 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----hH
Confidence 457899999999999999999999999998776 46789999999999999999999999999999998743 22
Q ss_pred HHHHhhhhHh--------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004753 79 ALTDLGTKVK--------LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 150 (732)
Q Consensus 79 ~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 150 (732)
+++..|.++. .+.-..+|+..++..+...|+..-+-..... +..++.. -+.--..
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em~ 172 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEMA 172 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHHH
Confidence 3333333322 2233456777788888888875422111000 0001111 0122234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 151 LGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 151 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
.|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|.+.-.-.-...|++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 5677777777777777777777765554 3466667777777777777766544333334444
No 259
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.59 E-value=3.3e-07 Score=102.59 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=124.6
Q ss_pred cEEEecCCC-CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC---------------------
Q 004753 471 ITFGSFNNL-AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE--------------------- 528 (732)
Q Consensus 471 ~~f~~~~~~-~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~--------------------- 528 (732)
+++....|+ .|-....++++++++..+|++.|.+.|.+.. ......+++..++.+..
T Consensus 322 ~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (519)
T TIGR03713 322 EIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQ 400 (519)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhccc
Confidence 333333355 8888999999999999999999999886632 23455666655665553
Q ss_pred -------CCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcc
Q 004753 529 -------SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL 601 (732)
Q Consensus 529 -------~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ 601 (732)
.+||.|.+... ..+....|..+.|++|++...|-.|.+||+..|||+|- .|.+-+..-|.+++
T Consensus 401 ~~~~~~~~~~v~f~gy~~-e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqIn---------yg~~~~V~d~~NG~ 470 (519)
T TIGR03713 401 TDEEQKEKERIAFTTLTN-EEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQIN---------KVETDYVEHNKNGY 470 (519)
T ss_pred chhhcccccEEEEEecCC-HHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeee---------cCCceeeEcCCCcE
Confidence 17999999754 34888999999999999998664499999999999992 23334445588999
Q ss_pred ccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 004753 602 IAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 651 (732)
Q Consensus 602 ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~ 651 (732)
|..|.++..+.++.+..|+...+++....-+.+ .-|+.+....++++
T Consensus 471 li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~---~~yS~~~i~~kW~~ 517 (519)
T TIGR03713 471 IIDDISELLKALDYYLDNLKNWNYSLAYSIKLI---DDYSSENIIERLNE 517 (519)
T ss_pred EeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HHhhHHHHHHHHHh
Confidence 999999999999999999988877766655543 23555555554443
No 260
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=1.7e-06 Score=92.60 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=108.5
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 165 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (732)
.....++++.|++.+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 334567999999999999988865 66779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 166 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 206 (732)
Q Consensus 166 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 206 (732)
++.+++.+..|++...|..|+.+|...|++++|+..++.+-
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999998877553
No 261
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.55 E-value=1.3e-07 Score=94.54 Aligned_cols=195 Identities=17% Similarity=0.112 Sum_probs=132.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004753 39 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 118 (732)
Q Consensus 39 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 118 (732)
+-..|+-|+++|+|++|+++|.+++..+|.++..+.+.+.+|+.+- .+..|..-+..++.++..+..+|...+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-------~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-------SFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH-------HHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 3566888888888888888888888888888777777666666644 777888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------HHHHHHHH
Q 004753 119 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---------LNNLGVVY 189 (732)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~ 189 (732)
.+-..+|+..+|.+-++.++++.|++.+....++.+-. ..++.- +.+-.|....+ ...-|..+
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~F 244 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKF 244 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhh
Confidence 88888888888888888888888887665544443322 111111 11111221111 11234556
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 190 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 190 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
...|.++.++.++..-+....++.....+ +..|.+.-++++++.-.-++...+|....+
T Consensus 245 sk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~ 303 (536)
T KOG4648|consen 245 SKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPD 303 (536)
T ss_pred hhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcc
Confidence 67777777777777666555544444444 667777778888887777777777765443
No 262
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=2.1e-05 Score=91.99 Aligned_cols=208 Identities=11% Similarity=0.008 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALE-RPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
.|...-..+.+.++.++|.+.+++|+.. ++.. ...|..+-+....-|.-+.-.+.|++|.+..... .
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~--------~ 1531 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAY--------T 1531 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchH--------H
Confidence 4666777778999999999999999974 4432 3344444444445567788888999988765432 3
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYK 156 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 156 (732)
+|..|..+|...+.+++|.++++..++...+...+|..++..++.+++-++|...+.+|++.-|. +.......|.+-+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 45667777888889999999999999999888999999999999999999999999999999887 6778888999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNL 219 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~~~~L 219 (732)
+.|+.+.+...|+..+..+|.-.+.|.-+...-.+.|+.+.+...|++++.+. +.....++..
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999998874 3333444433
No 263
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.49 E-value=2.4e-06 Score=92.30 Aligned_cols=181 Identities=17% Similarity=0.129 Sum_probs=132.2
Q ss_pred CCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHc-----CCcEEEEecCC-CC-----CHHHHHHHHHHHHHcCCCCCc
Q 004753 465 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAV-----PNSRLVVKCKP-FC-----CDSVRHRFLSTLEQLGLESLR 531 (732)
Q Consensus 465 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~-----p~~~l~l~~~~-~~-----~~~~~~~~~~~~~~~Gv~~~r 531 (732)
+..+..+.|.++|+. -|...-.+..+....... ++-++.+.|+. .+ .-.....+.+.+++.++..+.
T Consensus 268 ~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~ 347 (495)
T KOG0853|consen 268 GVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQF 347 (495)
T ss_pred eecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCce
Confidence 345557789999987 666666677777777666 45666666622 21 113446788889999997789
Q ss_pred EEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecC-CCcccccchhHHhhhcCCCcccc-CCHH-
Q 004753 532 VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTKVGLKHLIA-KNED- 607 (732)
Q Consensus 532 v~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~s~l~~~gl~~~ia-~~~~- 607 (732)
|.|++... +.+-..++..+.+.+-+... ..|.|++|||++|+|||+.. |.+.-.=+. |.++|.. .+.+
T Consensus 348 v~~~~s~~-~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~dp~~e~ 419 (495)
T KOG0853|consen 348 VWFLPSTT-RVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLIDPGQEA 419 (495)
T ss_pred EEEecCCc-hHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceeeCCchHH
Confidence 99988876 45556677778888888877 88999999999999999765 332221111 5555554 3444
Q ss_pred --HHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 608 --EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 608 --~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
...+..+++.+||+.+.++++..++++... |.++.|..++.+....
T Consensus 420 ~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~--fs~~~~~~ri~~~~~~ 467 (495)
T KOG0853|consen 420 VAELADALLKLRRDPELWARMGKNGLKRVKEM--FSWQHYSERIASVLGK 467 (495)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhHh
Confidence 488889999999999999999999998754 7888888777776653
No 264
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2e-05 Score=75.54 Aligned_cols=132 Identities=15% Similarity=0.181 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 004753 125 LKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 191 (732)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 191 (732)
.+.++|..++++++++..+. +..+..+|.+|... .++++|+.+|+++-+..... ..++...+..-..
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 36666666666666653332 23445677777654 78888888888887654322 2356666777778
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 004753 192 QGKMDAAAEMIEKAIAANPTYA-------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 256 (732)
Q Consensus 192 ~g~~~eA~~~l~~al~~~p~~~-------~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la 256 (732)
.++|.+|+..|++.....-++. ..++.-|.|+.-..+.-.+...+++..+++|...+.+-..++.
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk 238 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLK 238 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 8999999999999877654443 2345567788887888889999999999999987776554443
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=1.2e-06 Score=81.73 Aligned_cols=104 Identities=27% Similarity=0.318 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 148 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 222 (732)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~ 222 (732)
+..-|.-++..|+|++|..-|..|+.+.|..+. +|.+.|.++.++++++.|++.+.++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 344577788889999999999999998887643 778899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 223 YRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 223 ~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
|.++.++++|++-|++.++.+|....++.
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 99999999999999999999999876654
No 266
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=4e-06 Score=74.24 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 219 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~~~~L 219 (732)
.+.+++|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999975444 458999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 004753 220 GVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 220 a~~~~~~g~~~eA~~~~~~al~ 241 (732)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 267
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.43 E-value=7.9e-05 Score=84.07 Aligned_cols=226 Identities=15% Similarity=0.045 Sum_probs=165.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCC
Q 004753 13 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 92 (732)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~ 92 (732)
...+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++.... ..+-.+|..+++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL-------q~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL-------QFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH-------HHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999999999977776666666644333 344556666779
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCH---------H
Q 004753 93 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK-DRDNL---------D 162 (732)
Q Consensus 93 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~---------~ 162 (732)
+++|..+|++++..+|+ .+..+.+-.+|.+.++|.+-.+.--+..+..|+++..+.....+.. ..... .
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999999999 8888888899999999887666666666678887665555444443 22222 2
Q ss_pred HHHHHHHHHHhhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 163 KAVECYQMALSIK-PNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAI-A-ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 238 (732)
Q Consensus 163 ~A~~~~~~al~~~-p~~~~-~~~~la~~~~~~g~~~eA~~~l~~al-~-~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~ 238 (732)
-|....++.++.. +-... -....-.++..+|++++|.+.+..-+ + ..+.+...-......+...+++.+-.+...+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555666666655 22111 11223345677899999999994332 3 3334444445566777888888888888888
Q ss_pred HHhhCCCC
Q 004753 239 CLKIDPDS 246 (732)
Q Consensus 239 al~l~p~~ 246 (732)
++...+|+
T Consensus 252 Ll~k~~Dd 259 (932)
T KOG2053|consen 252 LLEKGNDD 259 (932)
T ss_pred HHHhCCcc
Confidence 88888886
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.43 E-value=5.5e-05 Score=74.53 Aligned_cols=171 Identities=19% Similarity=0.194 Sum_probs=131.8
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNN 150 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 150 (732)
+..+++-|......|++++|.+.|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.+ ..+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3345566666777889999999999999988765 4688999999999999999999999999998876 456777
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 151 LGVIYKDR--------DNLDKAVECYQMALSIKPNFSQ-----------------SLNNLGVVYTVQGKMDAAAEMIEKA 205 (732)
Q Consensus 151 la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~l~~a 205 (732)
.|.+++.. .-..+|+..+++.++..|+... --...|..|.+.|.+..|+.-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 77776542 2245678888888998887632 1234678888999999999999999
Q ss_pred HHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 206 IAANPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 206 l~~~p~~---~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
++..|+. .+++..+..+|..+|-.++|...-+-.-.-.|++.
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9887654 46788888899999999888776554444445543
No 269
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.42 E-value=1.3e-06 Score=92.76 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 175 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 175 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~---~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
+|+++.+++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56667777777777777777777777777777777776643 777777777777777777777777776
No 270
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=8.8e-07 Score=70.43 Aligned_cols=54 Identities=41% Similarity=0.514 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 192 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 192 ~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
.|++++|++.|++++..+|++..+++.++.+|...|++++|...+++++..+|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444444444444444444444444444444
No 271
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=5.9e-06 Score=82.07 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 004753 148 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 221 (732)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~La~ 221 (732)
.++.+.-++..|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|+. +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888888899999999999999999998876 5689999999999999999999999999987765 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 222 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 222 ~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
+...+|+.++|...|+++++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998766543
No 272
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.39 E-value=3.7e-05 Score=71.14 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 170 (732)
+.+....-..+.++..|... -.+.||..+.+.|++.+|...|++++. +.-+++..+..+++..+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 55555555555555555533 356788888888899999988888876 4566788888888888888888888888888
Q ss_pred HHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 171 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 171 al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
..+.+|. .++....+|.++..+|++.+|...|+.++...|+ +......+..+.++|+.++|..-+....
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8888764 3667788888888888888888888888888776 6667777888888888887776665443
No 273
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3.8e-05 Score=75.25 Aligned_cols=209 Identities=18% Similarity=0.096 Sum_probs=148.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHH-------HHHHHHHHHHHh----------
Q 004753 44 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN-------QGVAYYKKALYY---------- 106 (732)
Q Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~---------- 106 (732)
.-++..|+|..++...++.-... ...+....+..+|..+|.........+ .|+..+...++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHH
Confidence 44566888988888777765443 444555556667766664433222211 233333222211
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 107 ---------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 107 ---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
...+.-....-+.+|...+++++|++...+. .+.++...--.++.++.+.+-|.+.++++.+++.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 1112234455677889999999999988763 23455555667888999999999999999887654
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHH
Q 004753 178 FSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 253 (732)
Q Consensus 178 ~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 253 (732)
..+..||..+.+ .+++.+|.-+|++.-+..+..+.....++.++..+|++++|...++.++..++++++...|.
T Consensus 170 --~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred --HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344556655544 45789999999999988888899999999999999999999999999999999999999997
Q ss_pred HHHHhhh
Q 004753 254 LLAMNYI 260 (732)
Q Consensus 254 ~la~~~~ 260 (732)
..+..+.
T Consensus 248 iv~a~~~ 254 (299)
T KOG3081|consen 248 IVLALHL 254 (299)
T ss_pred HHHHHHh
Confidence 7665544
No 274
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=1.4e-06 Score=69.32 Aligned_cols=66 Identities=26% Similarity=0.269 Sum_probs=59.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 12 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
++..|++++|++.|++++..+|++..+++.+|.+|...|++++|...+++++...|+++..+..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 367899999999999999999999999999999999999999999999999999999765554433
No 275
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=7.2e-06 Score=81.49 Aligned_cols=105 Identities=21% Similarity=0.219 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
.|+.|.-++..|+|.+|...|..-++..|+. +.++++||.+++.+|++++|...|..+.+..|+++.+ ..+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA----pdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA----PDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC----hHHHH
Confidence 5666667777777777777777777766653 5567777777777777777777777777666665422 22344
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADA 113 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 113 (732)
.+|.+....|+.++|...|+++++..|+...+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 44444455556666666666666666655443
No 276
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=1.3e-05 Score=84.88 Aligned_cols=175 Identities=15% Similarity=0.109 Sum_probs=126.3
Q ss_pred cEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 004753 471 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 548 (732)
Q Consensus 471 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~ 548 (732)
.++.+++++ .|..+.+++....+....|+..++++|.+... ...+...+.+.+. .+.|.|.|.++ ..+....+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEKLAKKLGL-EDNVKFLGYVP-DEELAELL 274 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHHHHHHhCC-CCcEEEecccC-HHHHHHHH
Confidence 567777765 57888888888888888888888888876332 3455556677776 57899999877 45667788
Q ss_pred ccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc-C-CHHHHHHHHHHhhcCHHHHHH
Q 004753 549 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-K-NEDEYVQLALQLASDVTALAN 625 (732)
Q Consensus 549 ~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia-~-~~~~y~~~a~~l~~d~~~~~~ 625 (732)
..+|+++-|+.+ +.|.+++|||++|+|||+........ ++..-+ .+++. . +.++.......+..+.+.+..
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e-----~~~~~~-~g~~~~~~~~~~~~~~i~~~~~~~~~~~~ 348 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE-----VVEDGE-TGLLVPPGDVEELADALEQLLEDPELREE 348 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHH-----HhcCCC-ceEecCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 889999999887 66888999999999999854332222 222221 12233 2 578999999999998866677
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 626 LRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 626 ~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
+....++... ..|++..+...+++.|.....
T Consensus 349 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 349 LGEAARERVE--EEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHh
Confidence 6664444433 458999999998888887653
No 277
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=6.1e-06 Score=77.08 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004753 114 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 188 (732)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 188 (732)
+..-|.-++..|+|++|..-|..|+.+.|.. ...|.+.|.++.++++++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3445777888999999999999999998875 34678889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 189 YTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 189 ~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
|.+..++++|++-|++.++.+|...++.
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 9999999999999999999999865444
No 278
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.35 E-value=0.001 Score=68.55 Aligned_cols=266 Identities=17% Similarity=0.092 Sum_probs=181.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 84 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 84 (732)
+..-++.....|+++.|.+-|+.++..-....-.+..|-.-....|..+.|+.+.+.+....|....+....-.
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe------ 196 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE------ 196 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH------
Confidence 44556777888999999999998775322222233333344456899999999999999999987654433222
Q ss_pred hhHhhcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004753 85 TKVKLEGDINQGVAYYKKALYYN---WHYAD---AMYNLGVAY-GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 157 (732)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (732)
.....|+++.|+++.+...+.. ++-.+ +-..-+... .-.-+...|.....+++++.|+...+-..-+..+++
T Consensus 197 -~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 -ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred -HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 2234789999999998766532 22211 111222221 223467889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 158 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA---IAANPTYAEAYNNLGVLYRDAGSISLAID 234 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a---l~~~p~~~~~~~~La~~~~~~g~~~eA~~ 234 (732)
.|+..++-.+++.+.+..|. ++ ++.+|....--+.++.-++++ ..+.|++.+.....+..-+..|++..|..
T Consensus 276 d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred ccchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 99999999999999998875 22 333444433334455545444 45689999999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhhh-ccCCcHHHHHHHHHHHHHHhhhccCCCCCC
Q 004753 235 AYEQCLKIDPDSRNAGQNRLLAMNYI-NEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 290 (732)
Q Consensus 235 ~~~~al~l~p~~~~a~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 290 (732)
.-+.+....|... ...+++..-- +.|+..+ .+.|..+-.+ .|+.+.|.
T Consensus 351 ~Aeaa~r~~pres---~~lLlAdIeeAetGDqg~----vR~wlAqav~-APrdPaW~ 399 (531)
T COG3898 351 KAEAAAREAPRES---AYLLLADIEEAETGDQGK----VRQWLAQAVK-APRDPAWT 399 (531)
T ss_pred HHHHHhhhCchhh---HHHHHHHHHhhccCchHH----HHHHHHHHhc-CCCCCccc
Confidence 9999999988643 2234444332 3366554 3455544322 34445554
No 279
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.34 E-value=0.0005 Score=70.82 Aligned_cols=226 Identities=20% Similarity=0.122 Sum_probs=174.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhhhHhhcC
Q 004753 13 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEG 91 (732)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~lg~~~~~~g 91 (732)
...|..+.|+.+-+++-...|....++...-......|+++.|+++.+......--.. .+....+..+...+. .....
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~-s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM-SLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-HHhcC
Confidence 4689999999999999999999999988888889999999999999987665322111 122222222222221 12234
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ-- 169 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-- 169 (732)
+...|...-.++.++.|+...+-..-+..++..|+..++-.+++.+.+..|.- . ++.+|....--+.++.-++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999998863 2 2333433333334444444
Q ss_pred -HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 004753 170 -MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 170 -~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~-g~~~eA~~~~~~al~l~p~~ 246 (732)
+...+.|++.+.....+..-+..|++..|...-+.+....|. ..++..|+.+.... |+-.+...++-++++- |.+
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A-Prd 395 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA-PRD 395 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC-CCC
Confidence 445568999999999999999999999999999999988887 45677788887766 9999999999999874 443
No 280
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.34 E-value=2.6e-06 Score=68.78 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=46.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 004753 186 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 186 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 250 (732)
..+|...+++++|++++++++..+|+++..+..+|.++..+|++++|++.|+++++..|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777665553
No 281
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.33 E-value=7.4e-05 Score=69.22 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=122.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q 004753 44 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-YNWHYADAMYNLGVAYG 122 (732)
Q Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~ 122 (732)
....+.=+.+....-..+.++..|... ....++.++.. .|++.+|...|++++. +.-+++..+..++...+
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~e-------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAE-------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHH-------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 333444456666666666666666543 44445555555 5599999999999885 45677888999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 123 EMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 200 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 200 (732)
..+++.+|...+++..+.+|. .+.....+|..+..+|++.+|...|+.++...|+ +.+....+..+.++|+..+|..
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 999999999999999998875 4777888999999999999999999999998886 6677788899999999888877
Q ss_pred HHHHHHH
Q 004753 201 MIEKAIA 207 (732)
Q Consensus 201 ~l~~al~ 207 (732)
.+....+
T Consensus 215 q~~~v~d 221 (251)
T COG4700 215 QYVAVVD 221 (251)
T ss_pred HHHHHHH
Confidence 7665543
No 282
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.33 E-value=9.7e-06 Score=72.99 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 72 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 72 (732)
+..+|..|...+..|+|++|++.|+.+....|. ...+.+.++.+|+..+++++|+..+++-++++|.++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 457899999999999999999999999998775 46799999999999999999999999999999998743
No 283
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=3.1e-06 Score=68.30 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=36.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 153 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
.+|...+++++|++++++++.++|+++..+..+|.++..+|++++|++.++++++..|++..+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555544443
No 284
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.32 E-value=8.8e-07 Score=72.63 Aligned_cols=74 Identities=30% Similarity=0.499 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh
Q 004753 33 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 106 (732)
Q Consensus 33 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 106 (732)
|+...++.++|.+|..+|++++|+++|++++++..........++.++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34467899999999999999999999999998743333345566888999999999999999999999998865
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=9.3e-05 Score=71.51 Aligned_cols=202 Identities=22% Similarity=0.190 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 115 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 115 (732)
...|..-+.+|...++|++|..++.++.+-..++. .+..-+.+|...+.+......+.++..+++++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs----------- 98 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS----------- 98 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------
Confidence 45677778889999999999999999998766655 455667777777777777778888888888876
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 004753 116 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVY 189 (732)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 189 (732)
..|.+.|..+.|-..++++-+. .+..+.++|+++|++++.+..+. .+.+...+.++
T Consensus 99 ---~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 99 ---ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred ---HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 4566777777777666666443 23456777888887777664333 23556677888
Q ss_pred HHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChhHHHHHHHHHhh
Q 004753 190 TVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNY 259 (732)
Q Consensus 190 ~~~g~~~eA~~~l~~al~~------~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l----~p~~~~a~~~~~la~~~ 259 (732)
.+..++++|-..+.+-... .++....+.....+|....+|..|..+|+...++ .|++.....+++- .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---a 237 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---A 237 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---H
Confidence 8888888888777765433 2333455666667777788999999999987765 2333444444322 2
Q ss_pred hccCCcHHHHH
Q 004753 260 INEGHDDKLFE 270 (732)
Q Consensus 260 ~~~~~~~~a~~ 270 (732)
..+|+.++.-.
T Consensus 238 yd~gD~E~~~k 248 (308)
T KOG1585|consen 238 YDEGDIEEIKK 248 (308)
T ss_pred hccCCHHHHHH
Confidence 35677665443
No 286
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.26 E-value=3.2e-05 Score=69.74 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNN 218 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~---~~~~~ 218 (732)
+..++.-|...++.|+|++|++.|+......|.. ..+...++.+|++.+++++|+..+++.++++|+++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4455555566666666666666666665555433 34556666666666666666666666666665543 34555
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHhhCCCChhH
Q 004753 219 LGVLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 219 La~~~~~~g~---------------~~eA~~~~~~al~l~p~~~~a 249 (732)
.|.++..+.. ..+|...|++.++..|++.-+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 6666655554 778899999999999987654
No 287
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.22 E-value=2.1e-05 Score=86.90 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=75.1
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCC----Cccc--------cCCHHHH
Q 004753 543 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL----KHLI--------AKNEDEY 609 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl----~~~i--------a~~~~~y 609 (732)
++...|..||+++-|+.| +.|.|.+|||+||+||||.....|..=+ -..+|- .-+| ..+.+++
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v----~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM----EEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh----HHHhccCCCceEEEecCCccchHHHHHHH
Confidence 466678889999999999 5599999999999999996655442100 111111 1122 3567777
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 610 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 610 ~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
.+...++++. +.++.+.++.+... .+..|+++.++..+.+||..+.+
T Consensus 543 a~~m~~~~~~-~~r~~~~~r~~~~r-~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 543 TQYMYEFCQL-SRRQRIIQRNRTER-LSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhh
Confidence 7777887754 45555444443222 24679999999999999998765
No 288
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.21 E-value=7.1e-06 Score=87.26 Aligned_cols=68 Identities=26% Similarity=0.303 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 107 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA---CNNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 107 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
+|+++.+++++|.+|..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|++++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555555554444422 444444444444444444444444443
No 289
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.00028 Score=78.59 Aligned_cols=204 Identities=19% Similarity=0.251 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH----------HhhCCCCHHHHHHH---HHHHHHhhhhHhhcCCHHHHHHHHHH
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERC----------LAVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKK 102 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~p~~~~~~~~l---a~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (732)
-..|++.|..+...++.+.|+++|+|+ +..+|...+-+.+. -..|...|......|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 357888999999999999999999986 22333332222221 13456677788889999999999988
Q ss_pred HHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC--HHHH-----
Q 004753 103 ALYY---------------------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC--AEAC----- 148 (732)
Q Consensus 103 al~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~--~~~~----- 148 (732)
+-.. ...+..+.+.+|..|...|+..+|+..|.+|-.. ...+ .+-+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL 1017 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7543 2334557888999999999999999988876443 1111 1111
Q ss_pred -------HHHHHHHHHcC-CHHHHHHHHHHH------Hhh-----------------C-CCCHHHHHHHHHHHHHcCCHH
Q 004753 149 -------NNLGVIYKDRD-NLDKAVECYQMA------LSI-----------------K-PNFSQSLNNLGVVYTVQGKMD 196 (732)
Q Consensus 149 -------~~la~~~~~~g-~~~~A~~~~~~a------l~~-----------------~-p~~~~~~~~la~~~~~~g~~~ 196 (732)
...+..|...| +.+.|..+|.+| +++ + ..++..+..-+..+....+|+
T Consensus 1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 11233333444 455555544432 111 2 245667777778888888888
Q ss_pred HHHHHHHH------HHHhC----------------CC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 197 AAAEMIEK------AIAAN----------------PT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 197 eA~~~l~~------al~~~----------------p~---------~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
+|..++-. |+.+. |. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 88766543 33321 11 1245667888888888888877776655
No 290
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.20 E-value=8.1e-05 Score=64.80 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 84 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 84 (732)
+-..|..+.+.|+.+.|++.|.+++...|..+.+|++.+..+.-+|+.++|++.+++++++...... ....++.+.|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr---tacqa~vQRg 122 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR---TACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch---HHHHHHHHHH
Confidence 4455667777777777777777777777777777777777777777777777777777777544321 1234556666
Q ss_pred hhHhhcCCHHHHHHHHHHHHHhCCC
Q 004753 85 TKVKLEGDINQGVAYYKKALYYNWH 109 (732)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~al~~~p~ 109 (732)
.+|...|+-+.|..-|+.+-++...
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCH
Confidence 6666677777777777766655443
No 291
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00014 Score=76.57 Aligned_cols=242 Identities=14% Similarity=0.092 Sum_probs=172.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAV------- 65 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------- 65 (732)
+.+++..+..++..|+|.+|.+.+... +...+. ....|+++|-++++.+.|.-+..+|.++++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 356778889999999999999988764 222222 2345789999999999999999999999961
Q ss_pred --CC--CCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------
Q 004753 66 --SP--NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------- 126 (732)
Q Consensus 66 --~p--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------- 126 (732)
.| ...........++++.|..|...|+...|.++|.++......++..|..++.++....+
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~ 399 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSE 399 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCccccc
Confidence 11 11111222345678889999999999999999999999999999999999998863211
Q ss_pred ----------------------------------HHHHHHHHHHHHhcCC------------------------------
Q 004753 127 ----------------------------------FDMAIVFYELAFHFNP------------------------------ 142 (732)
Q Consensus 127 ----------------------------------~~~A~~~~~~al~~~p------------------------------ 142 (732)
.+-|.-+++.++-+-|
T Consensus 400 i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t 479 (696)
T KOG2471|consen 400 IRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTT 479 (696)
T ss_pred ceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCC
Confidence 2335555655553310
Q ss_pred ----------------CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-----HH
Q 004753 143 ----------------HC-----------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-----YT 190 (732)
Q Consensus 143 ----------------~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-----~~ 190 (732)
.. ..++.+++.+-...|+.-.|+....+.++. ++...++..+|.+ +.
T Consensus 480 ~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~ 558 (696)
T KOG2471|consen 480 TDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALC 558 (696)
T ss_pred cchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHH
Confidence 00 124556677778899999999999998865 4445555555554 45
Q ss_pred HcCCHHHHHHHHHHHHH------h-----------------CCC----------C-----HHHHHHHHHHHHHcCCHHHH
Q 004753 191 VQGKMDAAAEMIEKAIA------A-----------------NPT----------Y-----AEAYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 191 ~~g~~~eA~~~l~~al~------~-----------------~p~----------~-----~~~~~~La~~~~~~g~~~eA 232 (732)
.+.+..+|...+.-.+- + +|. . ...+++||.++..+|++++|
T Consensus 559 lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqA 638 (696)
T KOG2471|consen 559 LLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQA 638 (696)
T ss_pred HcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHH
Confidence 57778888776654210 0 110 1 13578899999999999999
Q ss_pred HHHHHHHHhhCC
Q 004753 233 IDAYEQCLKIDP 244 (732)
Q Consensus 233 ~~~~~~al~l~p 244 (732)
...+.++..+-+
T Consensus 639 k~ll~~aatl~h 650 (696)
T KOG2471|consen 639 KSLLTHAATLLH 650 (696)
T ss_pred HHHHHHHHHhhh
Confidence 999999988877
No 292
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00021 Score=69.13 Aligned_cols=135 Identities=16% Similarity=0.077 Sum_probs=86.5
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 150 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 150 (732)
+..|..-+..|...+++++|..++.++.+-..++. .++-..+.+...+..+.++..+++++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------ 98 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------ 98 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------------
Confidence 34445555556666677777777777765443332 234444445555555555555555553
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 004753 151 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYR 224 (732)
Q Consensus 151 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~La~~~~ 224 (732)
..|.+.|..+.|-..++++-+ .....+.++|+.+|++++.+-..+ .+.+-..+.++.
T Consensus 99 --~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 99 --ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred --HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 345556666666666665543 356678999999999998874332 345667888999
Q ss_pred HcCCHHHHHHHHHHHH
Q 004753 225 DAGSISLAIDAYEQCL 240 (732)
Q Consensus 225 ~~g~~~eA~~~~~~al 240 (732)
+..++.+|-..+.+-.
T Consensus 162 rl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEG 177 (308)
T ss_pred hhHHhhHHHHHHHHhh
Confidence 9999999988887654
No 293
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.19 E-value=1.5e-05 Score=73.92 Aligned_cols=93 Identities=25% Similarity=0.264 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 004753 52 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK---LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-- 126 (732)
Q Consensus 52 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 126 (732)
|+.|.+.++.....+|.+.+++.+-+.++..++.... ....+++|+.-|++++.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5667777777777777777777777777777765432 33467889999999999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHHhcCCCC
Q 004753 127 ---------FDMAIVFYELAFHFNPHC 144 (732)
Q Consensus 127 ---------~~~A~~~~~~al~~~p~~ 144 (732)
|++|..+|++|...+|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344444444444444443
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00048 Score=66.31 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALER----P--MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~----p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
.+..-|..|...+++..|-..|.++-+.. . +-...|...+++|.+. +.++|+.++++++++..+.+. ...-+
T Consensus 36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Gr-f~~aA 113 (288)
T KOG1586|consen 36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGR-FTMAA 113 (288)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhH-HHHHH
Confidence 33444455555555555555555553321 1 1233444444444333 666666666666655443321 11123
Q ss_pred HHHHHhhhhHhhc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 78 IALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 78 ~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
.-+..+|.+|... .++++|+.+|+++-+....... .......+...+....
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees----------------------------~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES----------------------------VSSANKCLLKVAQYAA 165 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh----------------------------hhhHHHHHHHHHHHHH
Confidence 3333444444433 4445555555444433221100 0000123333444444
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 213 (732)
..++|.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++..+++|...
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 55555556655555554433332 2334455555555666666666666666666543
No 295
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00022 Score=69.63 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=142.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004753 42 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 121 (732)
Q Consensus 42 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 121 (732)
-|.+....|+..+.+.-+......-.+ +-.........+..++.+++-+ ..+.+.+..++
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~l 187 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCL 187 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHH
Confidence 356666777777777666555432111 0111111223355666666644 35677888888
Q ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCC
Q 004753 122 GEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGK 194 (732)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~ 194 (732)
.-.|+|.-.+..+.+.++.+ |..+.....+|.+..+.|+.+.|..+++++-+.. ........+.+.++.-.++
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 99999999999999999987 6678888899999999999999999999655432 1223467778888889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 195 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 195 ~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
+.+|...+.+++..+|.++.+.++.|.|+...|+..+|++..+.+++..|...
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999753
No 296
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.15 E-value=2.4e-06 Score=69.96 Aligned_cols=64 Identities=34% Similarity=0.513 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 179 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---P----TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 179 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---p----~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
..++.++|.+|..+|++++|+++|++++++. + ....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566666666666666666666665441 1 12345666677777777777777777766654
No 297
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.13 E-value=6.7e-05 Score=82.22 Aligned_cols=128 Identities=11% Similarity=0.143 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCC-
Q 004753 484 PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG- 562 (732)
Q Consensus 484 ~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g- 562 (732)
...++.+.++.+++|+..|-| |.+. +...+|.+. .+. .+-+.+-+.. ..+.-.+|..||++||++..+|
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~t---e~s~kL~~L-~~y---~nvvly~~~~--~~~l~~ly~~~dlyLdin~~e~~ 360 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALT---EMSSKLMSL-DKY---DNVKLYPNIT--TQKIQELYQTCDIYLDINHGNEI 360 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecC---cccHHHHHH-Hhc---CCcEEECCcC--hHHHHHHHHhccEEEEccccccH
Confidence 899999999999999999999 5432 223566665 555 3445554443 3477789999999999999955
Q ss_pred cccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccc-cCCHHHHHHHHHHhhcCHHHHHHHHH
Q 004753 563 TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-AKNEDEYVQLALQLASDVTALANLRM 628 (732)
Q Consensus 563 ~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~i-a~~~~~y~~~a~~l~~d~~~~~~~r~ 628 (732)
+.++.||+..|+|||+..-......... . ..++ ..+.+++++..+.+.+|++.++..-.
T Consensus 361 ~~al~eA~~~G~pI~afd~t~~~~~~i~------~-g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~ 420 (438)
T TIGR02919 361 LNAVRRAFEYNLLILGFEETAHNRDFIA------S-ENIFEHNEVDQLISKLKDLLNDPNQFRELLE 420 (438)
T ss_pred HHHHHHHHHcCCcEEEEecccCCccccc------C-CceecCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8899999999999998664422221111 0 1222 36889999999999999965555333
No 298
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.09 E-value=0.00014 Score=80.45 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=116.6
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-----HHHHHHHHHHHHH-------cCCCCC
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQ-------LGLESL 530 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~-----~~~~~~~~~~~~~-------~Gv~~~ 530 (732)
|..++.++.|+ .|..+.-++++.++|++.|+ .+|++++.|... ..++..+.+.+.+ .|. ..
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~-~p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGW-TP 362 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCC-cc
Confidence 45577788998 89999999999999999996 688888776422 2344555554443 244 23
Q ss_pred cEEEcCCcCCcHHHHHhcccccEEecCCCCCC-cccHHHhhhcCC----CeeecCCCcccccchhHHhhhcCCCccc--c
Q 004753 531 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 603 (732)
Q Consensus 531 rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g-~~t~~eal~~Gv----Pvvt~~g~~~~~r~~~s~l~~~gl~~~i--a 603 (732)
.+.|.+.++ .++..++|+.+||+|.|+-.-| +.++.|+++++. |+|. |+.+.+- ..+ -..++ .
T Consensus 363 v~~~~~~v~-~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l-~~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLP-YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VEL-KGALLTNP 432 (487)
T ss_pred EEEEcCCCC-HHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhc-CCCEEECC
Confidence 456777776 7899999999999999999955 779999999987 5554 4444211 111 11223 3
Q ss_pred CCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 604 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 604 ~~~~~y~~~a~~l~~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
.|.++.++...+-.+ ..+.+.+.-+.+++.+.+ +|...|+..+-..+
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl~~l 480 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFLAAV 480 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 677777776655555 445555555666666554 47777777665443
No 299
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.09 E-value=0.00013 Score=63.46 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=52.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHc
Q 004753 117 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQ 192 (732)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 192 (732)
.|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++-+++++++.... ..++...|.+|..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34445555566666666666666666666666666666666666666666666666554322 22455555666666
Q ss_pred CCHHHHHHHHHHHHHhC
Q 004753 193 GKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~ 209 (732)
|+-+.|..-|+.+-++.
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666666665555443
No 300
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.0001 Score=81.90 Aligned_cols=207 Identities=19% Similarity=0.247 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH--------HH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKA--------AL---ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 72 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~a--------l~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 72 (732)
+|-++|..+....+.+-|.-++-.. +. .+++ +.-...|.+..++|-.++|+.+|.++-+.+
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D------ 830 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD------ 830 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 5677777777777766666555322 22 2333 333455677788888999999988875432
Q ss_pred HHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------hcCC
Q 004753 73 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF----------HFNP 142 (732)
Q Consensus 73 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----------~~~p 142 (732)
.+...|...|.+++|.+..+.--.+ .....|++.+..+...++.+.|+++|+++- ..+|
T Consensus 831 ---------LlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 831 ---------LLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred ---------HHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 2445566678888888776542221 124578889999999999999999998752 2233
Q ss_pred C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 143 H----------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 143 ~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
. +...|..-|..+...|+.+.|+.+|..|- -|+.+..+..-+|+.++|-...++. .+
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~es-----gd 966 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEES-----GD 966 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHhc-----cc
Confidence 2 34455566777778888888888888763 3566677777788888887665543 66
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 213 AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 213 ~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
..+.+.||..|...|+..+|+..|.+|-..
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999887543
No 301
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00022 Score=69.63 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=118.7
Q ss_pred HHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCHHHH
Q 004753 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----N--PHCAEAC 148 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~ 148 (732)
+..+.+.+..+..-.++|.-.+..+.+.++.+ |..+.....+|.+..+.|+.+.|..++++.-+. + .....+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34555556666666889999999999999988 667888899999999999999999999965443 2 2335677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 149 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
.+.+.++.-.+++.+|...+.+++..++.++.+.++.|.|+...|+..+|++.++.+++..|..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 8888999999999999999999999999999999999999999999999999999999999874
No 302
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.04 E-value=0.00079 Score=72.01 Aligned_cols=188 Identities=14% Similarity=0.075 Sum_probs=95.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 41 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 120 (732)
Q Consensus 41 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 120 (732)
.+..-..+..+.++-++...+|++++|+...++..++.- ......+|.++|+++++...... .....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE---------eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~ 239 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE---------EASTIVEAEELLRQAVKAGEASL----GKSQF 239 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc---------cccCHHHHHHHHHHHHHHHHHhh----chhhh
Confidence 344445567777888888888888888776554443321 12246777777777775432110 00000
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHH
Q 004753 121 YGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMD 196 (732)
Q Consensus 121 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ 196 (732)
....|..- +.....+. ...+...+|.+..+.|+.++|++.++..++..|. +..++.+|..++...+.|.
T Consensus 240 ~~~~g~~~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 240 LQHHGHFW-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhcccchh-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 01111110 00110111 1234445666666666666666666666665543 2345666666666666666
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhhCCCChh
Q 004753 197 AAAEMIEKAIAA-NPTYAEAYNNLGVLYRD-AGS---------------ISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 197 eA~~~l~~al~~-~p~~~~~~~~La~~~~~-~g~---------------~~eA~~~~~~al~l~p~~~~ 248 (732)
++...+.+.-++ -|+.+...+.-+.+..+ .++ ...|.+...+|++.+|.-+.
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 666666664332 23444444443333221 111 12356667777777776544
No 303
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0042 Score=65.94 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 2 QPAYYNLGVVYSELM--QYDTALGCYEKAALERPMY---AEAYCNMGVIY-KNRGDLESAIACYERCLAVSPNFEIAKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 75 (732)
+.++..+|..+...+ +..+++++++..+...|.. +.....+|.++ ....+.+.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 457778888999999 9999999999998877653 45677777755 45889999999999998876544433333
Q ss_pred HHHHHHHhhhhHhhcC-CHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHH
Q 004753 76 MAIALTDLGTKVKLEG-DINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFY 134 (732)
Q Consensus 76 la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~ 134 (732)
.-.++..++.+|.... .+..+...+++++++....+. ..+.++.+..-.+++..|.+.+
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 3344555666665555 788889999999988766542 4556677766666666666554
No 304
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.02 E-value=0.00014 Score=79.66 Aligned_cols=164 Identities=14% Similarity=0.177 Sum_probs=107.4
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
+..++|.++++.....+.+++...+.+...|--.++..|.+.. ...+. .+ +++|.+.++++ .. .+
T Consensus 224 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~----~~~~~------~~-~~~v~~~~~~p-~~---~l 288 (392)
T TIGR01426 224 GRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD----PADLG------EL-PPNVEVRQWVP-QL---EI 288 (392)
T ss_pred CCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----hhHhc------cC-CCCeEEeCCCC-HH---HH
Confidence 4567899999987777778877777787777555555554321 11111 23 57888989886 33 34
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc---CCHHHHHHHHHHhhcCHHHHH
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALA 624 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~~ 624 (732)
+..+|+++. .+|..|++|||.+|+|+|.++...- ...-+..+...|....+- -+.++..+...++..|++.++
T Consensus 289 l~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~ 364 (392)
T TIGR01426 289 LKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAE 364 (392)
T ss_pred HhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHH
Confidence 566999982 3566799999999999999875422 333445566677765443 256788887888889987666
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 625 NLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 625 ~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
.++ .+++.+... ...+..+..+|+.+
T Consensus 365 ~~~-~l~~~~~~~--~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 365 RLR-KMRAEIREA--GGARRAADEIEGFL 390 (392)
T ss_pred HHH-HHHHHHHHc--CCHHHHHHHHHHhh
Confidence 653 344444332 25666666676654
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.02 E-value=5.6e-05 Score=70.27 Aligned_cols=97 Identities=22% Similarity=0.194 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhH
Q 004753 18 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD----------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 87 (732)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 87 (732)
|+.|.+.++.....+|.+++.+++-|.++.++.+ +++|+.-|++++.++|+..+++.+++.++..+|.+-
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999999999887643 567888899999999999999999999999988644
Q ss_pred hhc----CCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 88 KLE----GDINQGVAYYKKALYYNWHYADAM 114 (732)
Q Consensus 88 ~~~----g~~~~A~~~~~~al~~~p~~~~~~ 114 (732)
-.. ..|++|..+|+++...+|++....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 332 558889999999999999886533
No 306
>PLN02670 transferase, transferring glycosyl groups
Probab=98.02 E-value=0.00014 Score=80.47 Aligned_cols=173 Identities=12% Similarity=0.050 Sum_probs=108.4
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 542 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~ 542 (732)
+..|+|.||++...++++.++..+.-|...|..-||.+..+... +.+-+.+.++....| +++.+|.| +.
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG-----~vv~~W~P-Q~ 350 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG-----MIHVGWVP-QV 350 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCC-----eEEeCcCC-HH
Confidence 35689999999999999999999999999999999988643111 112234444333333 57789988 55
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC--CCcccccchhHHhhhcCCCcccc-------CCHHHHHHHH
Q 004753 543 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA-------KNEDEYVQLA 613 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~s~l~~~gl~~~ia-------~~~~~y~~~a 613 (732)
+.++- ..+..|+ -.+|.+|++||+++|||+|+++ ++. ...+.++...|+.--+. -+.++..+..
T Consensus 351 ~IL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ---~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av 423 (472)
T PLN02670 351 KILSH-ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNEQ---GLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESV 423 (472)
T ss_pred HHhcC-cccceee---ecCCcchHHHHHHcCCCEEeCcchhcc---HHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHH
Confidence 55533 3344566 2478889999999999999988 332 22333444455543231 2566666666
Q ss_pred HHhhcCHHHHHHHHHHH---HHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 614 LQLASDVTALANLRMSL---RDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 614 ~~l~~d~~~~~~~r~~l---r~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
.++..|++ -..+|+++ ++.+... -.....+..+++.+..+
T Consensus 424 ~~vm~~~~-g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 424 RLAMVDDA-GEEIRDKAKEMRNLFGDM--DRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHhcCcc-hHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHh
Confidence 66666641 12333333 3333322 24667777777766543
No 307
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00033 Score=70.71 Aligned_cols=152 Identities=13% Similarity=-0.041 Sum_probs=121.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCCHHHH
Q 004753 89 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKA 164 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A 164 (732)
..|++.+|...+++.++..|.+.-++..--.+++.+|+.+.-...+++.+-. +++. ....-.++-.+...|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3678888989999999999998888888888888899988888888888877 6655 34444566777888999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 165 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 165 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
.+..++++++++.+..+...++.++...+++.++.+++.+.-..-... ..-|..-+.++...+.|+.|++.|.+-+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999998887764432221 1224556778888889999999888755
No 308
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=0.00046 Score=73.56 Aligned_cols=244 Identities=16% Similarity=0.142 Sum_probs=141.4
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCCCCeEEeccc-CCC---CCCCCCccEEEecCCCCCcCcccCCccce
Q 004753 366 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIG-YPN---TTGLPTIDYRITDSLADPPETKQKHVEEL 441 (732)
Q Consensus 366 ~~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g-~p~---t~g~~~~Dy~~~d~~~~p~~~~~~~~E~l 441 (732)
-.++-+.|++.++|++|-..|+-...-.-......-|+-+.--. .|+ -...+..+++.+. .|........++.
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~---f~~~~~~~~~~~~ 156 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASA---FPKLEAGVKPENV 156 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeec---cccccccCCCCce
Confidence 35788899999999999998887653222112223466554322 122 1112333444432 1211111112222
Q ss_pred EEcCCCcc-ccCCCCCCCCCCCCCCCCCCCcEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 004753 442 IRLPECFL-CYTPSPEAGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 517 (732)
Q Consensus 442 ~~lp~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~ 517 (732)
+..-+... .+.. ... +..+..+ ..+.+++..++-. .+++..+-+++..+.. +..++..++. ...++
T Consensus 157 ~~tG~Pvr~~~~~-~~~-~~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~----~~~~~ 226 (357)
T COG0707 157 VVTGIPVRPEFEE-LPA-AEVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGK----NDLEE 226 (357)
T ss_pred EEecCcccHHhhc-cch-hhhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCc----chHHH
Confidence 22211100 0010 000 0001111 1145555555533 3344444333333332 3455554433 22567
Q ss_pred HHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcc---cccchhHHh
Q 004753 518 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLL 593 (732)
Q Consensus 518 ~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~s~l 593 (732)
+.....+.|+ +.+.|. ..+...+|..+|+++ + .|++|+.|.+++|+|+|-.+=..- ....-|-.|
T Consensus 227 ~~~~~~~~~~----~~v~~f---~~dm~~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 227 LKSAYNELGV----VRVLPF---IDDMAALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred HHHHHhhcCc----EEEeeH---HhhHHHHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 7777778877 666666 457788899999998 6 899999999999999998775443 344467778
Q ss_pred hhcCCCccccC---CHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004753 594 TKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDL 633 (732)
Q Consensus 594 ~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~r~~lr~~ 633 (732)
...|..-.+.+ +.+.+++...++.++++.++++++..++.
T Consensus 296 ~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 296 EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88887666643 46899999999999999999999998875
No 309
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.95 E-value=0.0033 Score=71.45 Aligned_cols=195 Identities=16% Similarity=0.069 Sum_probs=144.3
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004753 47 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 126 (732)
Q Consensus 47 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 126 (732)
...+++.+|+....+.++..|+..-+....+.++.+ .|+.++|..+++..-...+++...+..+-.+|..+++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r-------~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR-------LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-------hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 456889999999999999999987666555555555 4599999988888777788888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCH---------H
Q 004753 127 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-QGKM---------D 196 (732)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~---------~ 196 (732)
+++|..+|++++..+|+ .+..+.+-.+|.+.++|.+-.+.--+..+..|+.+..+.....+..+ .... .
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999999999 88888888999999988887777666677888887755544444333 2222 3
Q ss_pred HHHHHHHHHHHhC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHH-HHHhhCCCChhHH
Q 004753 197 AAAEMIEKAIAAN-PTY--AEAYNNLGVLYRDAGSISLAIDAYE-QCLKIDPDSRNAG 250 (732)
Q Consensus 197 eA~~~l~~al~~~-p~~--~~~~~~La~~~~~~g~~~eA~~~~~-~al~l~p~~~~a~ 250 (732)
-|.+..++.++.. +-. .++. ..-.++..+|++++|.+.+. ...+..+......
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l 228 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYL 228 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHH
Confidence 4555666666655 222 2222 23356677899999999993 4444444444333
No 310
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.92 E-value=0.00011 Score=80.15 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC-------------cEEEcCCcCCcHHHHHh
Q 004753 481 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-------------RVDLLPLILLNHDHMQA 547 (732)
Q Consensus 481 K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~-------------rv~~~~~~~~~~~~~~~ 547 (732)
+.-|.++++..++.++ |+.++++...+. ...+.+++.+.+.|+... .+.+.+. ..+....
T Consensus 221 ~~lp~~l~al~~L~~~-~~~~~v~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~ 293 (396)
T TIGR03492 221 RNLKLLLRALEALPDS-QPFVFLAAIVPS---LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAEI 293 (396)
T ss_pred ccHHHHHHHHHHHhhC-CCeEEEEEeCCC---CCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHHH
Confidence 4445777777777655 777777654221 233556666666676421 2455443 3567788
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhc----CCCccc-cCCHHHHHHHHHHhhcCHHH
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV----GLKHLI-AKNEDEYVQLALQLASDVTA 622 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~----gl~~~i-a~~~~~y~~~a~~l~~d~~~ 622 (732)
|+.+|++|-. +||+|.|++.+|+|+|..+++.+ ...+.++... |-...+ -.+.+...+...+|..|++.
T Consensus 294 l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~ 367 (396)
T TIGR03492 294 LHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPEL 367 (396)
T ss_pred HHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHH
Confidence 8999999955 55667999999999999985532 3455555542 433333 35568888888899999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 004753 623 LANLRMSLRDLMSKSPVCDGQNFALGLE 650 (732)
Q Consensus 623 ~~~~r~~lr~~~~~~~~~~~~~~~~~~e 650 (732)
+.++.+..+.++.. -...++.++.++
T Consensus 368 ~~~~~~~~~~~lg~--~~a~~~ia~~i~ 393 (396)
T TIGR03492 368 LERCRRNGQERMGP--PGASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHH
Confidence 88887655544422 123444444443
No 311
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.90 E-value=0.00074 Score=73.80 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=111.5
Q ss_pred CCCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 466 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 466 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
..+..++|-++++..-. .++++...+.+...|...++-.+.. . . ...++ ++.+...+++| ..
T Consensus 234 ~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~-----~------~~~~~-p~n~~v~~~~p-~~--- 295 (406)
T COG1819 234 PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-R-----D------TLVNV-PDNVIVADYVP-QL--- 295 (406)
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-c-----c------ccccC-CCceEEecCCC-HH---
Confidence 34567778888877433 7888888888888776655554431 0 0 12355 68888888887 44
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc---CCHHHHHHHHHHhhcCHHH
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 622 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~ 622 (732)
..+..+|+++ ..+|++||.|||..|||+|.++.. +-.=.-+.-+..+|....+- .+++.-.+...+..+|+..
T Consensus 296 ~~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 296 ELLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred HHhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 4555599998 237788999999999999999876 32333566677788886665 5677777777778888877
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 623 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 623 ~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
++..++ +++.+... ...+..+..+|+..++
T Consensus 372 ~~~~~~-~~~~~~~~--~g~~~~a~~le~~~~~ 401 (406)
T COG1819 372 RRAAER-LAEEFKEE--DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHH-HHHHhhhc--ccHHHHHHHHHHHHhc
Confidence 766444 44433332 2466677888776653
No 312
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.90 E-value=0.00023 Score=78.97 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=89.8
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC---------------CH----HHHHHHHHHHHHcCCC
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC---------------CD----SVRHRFLSTLEQLGLE 528 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~---------------~~----~~~~~~~~~~~~~Gv~ 528 (732)
.+.|+|.||++...++.+.++-.+.-|...|...||.+..+.. .+ .+-+++.++...
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~---- 337 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHD---- 337 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcC----
Confidence 4668999999999999999999999999999999999853210 00 111233333322
Q ss_pred CCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHh-hhcCCCcccc----
Q 004753 529 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA---- 603 (732)
Q Consensus 529 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l-~~~gl~~~ia---- 603 (732)
..+++.+|+| +.+.+.- ..+..|+ -.+|.+|++||+++|||+|+++--. -...-+..+ ..+|+.-.+.
T Consensus 338 -rg~vv~~W~P-Q~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~-DQ~~na~~~~~~~g~gv~~~~~~~ 410 (481)
T PLN02992 338 -RGFVVPSWAP-QAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFA-EQNMNAALLSDELGIAVRSDDPKE 410 (481)
T ss_pred -CCEEEeecCC-HHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccc-hhHHHHHHHHHHhCeeEEecCCCC
Confidence 2467889987 5554433 3333454 2477889999999999999988321 011223333 2455543221
Q ss_pred -CCHHHHHHHHHHhhcC
Q 004753 604 -KNEDEYVQLALQLASD 619 (732)
Q Consensus 604 -~~~~~y~~~a~~l~~d 619 (732)
-+.++..+...++..+
T Consensus 411 ~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 411 VISRSKIEALVRKVMVE 427 (481)
T ss_pred cccHHHHHHHHHHHhcC
Confidence 2556666666676655
No 313
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.89 E-value=0.00041 Score=81.89 Aligned_cols=179 Identities=17% Similarity=0.133 Sum_probs=122.7
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE--EEE--ecCCCC-CHHHHHHHHHHHH--------HcCCCC-CcE
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVV--KCKPFC-CDSVRHRFLSTLE--------QLGLES-LRV 532 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~l--~~~~~~-~~~~~~~~~~~~~--------~~Gv~~-~rv 532 (732)
|..++..+.|+ .|..+.-+.+|.+.|+..|+.+ ++| +..|.. ..+..+++++.+. ++|-.. .=|
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv 441 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPI 441 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceE
Confidence 45578888988 8999999999999999999853 333 333321 2123333333332 234311 125
Q ss_pred EEcCCcCCcHHHHHhcccccEEecCCCCCC-cccHHHhhhc-----CCCeeecCCCcccccchhHHhhhcCCCcccc--C
Q 004753 533 DLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYM-----GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--K 604 (732)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g-~~t~~eal~~-----GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~ 604 (732)
+++.+.-+.++..++|..+||||-|+-.-| +.+..|+++| |++|++= |++ ++..| |-..+++ .
T Consensus 442 ~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSE----faG--aa~~L---~~~AllVNP~ 512 (934)
T PLN03064 442 HHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSE----FAG--AAQSL---GAGAILVNPW 512 (934)
T ss_pred EEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeC----CCc--hHHHh---CCceEEECCC
Confidence 555543347899999999999999999855 8899999999 7777741 111 12233 3233443 5
Q ss_pred CHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 004753 605 NEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 659 (732)
Q Consensus 605 ~~~~y~~~a~~l~~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 659 (732)
|.++.++...+.++ +++.+....+.+++.+.. +|...|+..+.+.+...|..
T Consensus 513 D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~---~d~~~Wa~~fl~~L~~~~~~ 565 (934)
T PLN03064 513 NITEVAASIAQALNMPEEEREKRHRHNFMHVTT---HTAQEWAETFVSELNDTVVE 565 (934)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 88888887777666 888888888888887654 68999999988888887743
No 314
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.89 E-value=0.0015 Score=70.04 Aligned_cols=222 Identities=14% Similarity=0.003 Sum_probs=148.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh
Q 004753 9 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 88 (732)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 88 (732)
-....+..+.++-++.-++|++++|+.+.+|..|+.-. .....+|.++|+++++.....-.. ......
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~----s~~~~~------ 242 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGK----SQFLQH------ 242 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhch----hhhhhc------
Confidence 34456788999999999999999999999998887532 345789999999998765432100 000000
Q ss_pred hcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHH
Q 004753 89 LEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKA 164 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A 164 (732)
.|.. -......+. ...+...+|.+..++|+.++|++.++..++.+|. +..++.+|..++...+.|.++
T Consensus 243 -~g~~-------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 243 -HGHF-------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred -ccch-------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 1111 111111111 2345567888889999999999999999887765 466888899999999999999
Q ss_pred HHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHHHH------HH
Q 004753 165 VECYQMALSI-KPNFSQSLNNLGVVYTV-QGK---------------MDAAAEMIEKAIAANPTYAEAYNNL------GV 221 (732)
Q Consensus 165 ~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~l~~al~~~p~~~~~~~~L------a~ 221 (732)
...+.+--.+ -|+.+...+..+.+..+ .++ -..|.+.+.+|++.||..+..+..+ -.
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPe 394 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPE 394 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChH
Confidence 8888886443 34555555544443322 111 2347788999999999887765442 12
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 222 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 222 ~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
-+.+.|+ .||+.|---.+..-.+-..+..
T Consensus 395 hilkrGD-SEAiaYAf~hL~hWk~veGAL~ 423 (539)
T PF04184_consen 395 HILKRGD-SEAIAYAFFHLQHWKRVEGALN 423 (539)
T ss_pred HhcCCCc-HHHHHHHHHHHHHHhcCHhHHH
Confidence 3456675 8888888888877766666543
No 315
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00013 Score=76.89 Aligned_cols=240 Identities=13% Similarity=0.068 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CC--CCH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPM----YA-EAYCNMGVIYKNRGDLESAIACYERCLAV------SP--NFE 70 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p--~~~ 70 (732)
.+|+.|.+++...++-.|++........-.. .+ ..-+..-..+....+.++|+.++.-.-++ .+ ++.
T Consensus 102 ~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~ 181 (696)
T KOG2471|consen 102 MDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHI 181 (696)
T ss_pred HhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 5788899999888998988887776543211 11 12223334455566667776655432221 01 010
Q ss_pred HHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004753 71 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 150 (732)
Q Consensus 71 ~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 150 (732)
.. ......+-...|..-+--+ ++ ...+.......|.+..+...+..-.+.++....+.+.+...
T Consensus 182 ~~------------nn~~kt~s~~aAe~s~~~a---~~-k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~L 245 (696)
T KOG2471|consen 182 PA------------NNLLKTLSPSAAERSFSTA---DL-KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLL 245 (696)
T ss_pred ch------------hhhcccCCcchhcccchhh---cc-chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHH
Confidence 00 0000111122222211110 11 12222333344455666666666666666666677777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHH-HhhCCC------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 004753 151 LGVIYKDRDNLDKAVECYQMA-LSIKPN------F--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------------- 208 (732)
Q Consensus 151 la~~~~~~g~~~~A~~~~~~a-l~~~p~------~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~------------- 208 (732)
.+..++..|++.+|.+.+... +...+. . ..+++++|.++++.|.|.-+..+|.++++.
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 777777777777777766543 111222 1 224577788888888888888888777751
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhh
Q 004753 209 -----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 259 (732)
Q Consensus 209 -----~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~ 259 (732)
.....++.++.|..|...|+.-.|.++|.++....-.++..|.++.-+...
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 112467889999999999999999999999998888888887765544433
No 316
>PLN03004 UDP-glycosyltransferase
Probab=97.87 E-value=0.00018 Score=79.18 Aligned_cols=146 Identities=11% Similarity=0.071 Sum_probs=91.1
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNH 542 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~----~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~ 542 (732)
+.+.|+|.||++...+.++.++..+.-|...+...||.+..+...+ .....+-.-|.++ +....+++.+|.| +.
T Consensus 268 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er-~~~~g~~v~~W~P-Q~ 345 (451)
T PLN03004 268 PEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSR-TEDKGMVVKSWAP-QV 345 (451)
T ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHh-ccCCcEEEEeeCC-HH
Confidence 3467899999999999999999999999999999999986431100 0111011122222 2124567888987 55
Q ss_pred HHHHhcccccE--EecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhh-hcCCCcccc------CCHHHHHHHH
Q 004753 543 DHMQAYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQLA 613 (732)
Q Consensus 543 ~~~~~~~~~Di--~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~-~~gl~~~ia------~~~~~y~~~a 613 (732)
+.++ ..+| |+ -.+|.+|++||+++|||+|+++-- .-...-+..+. .+|+.--+. -+.++..+..
T Consensus 346 ~iL~---H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~-~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av 418 (451)
T PLN03004 346 PVLN---HKAVGGFV---THCGWNSILEAVCAGVPMVAWPLY-AEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRV 418 (451)
T ss_pred HHhC---CCccceEe---ccCcchHHHHHHHcCCCEEecccc-ccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHH
Confidence 5443 3555 66 247788999999999999998831 11222333443 335432221 2556666666
Q ss_pred HHhhcCHH
Q 004753 614 LQLASDVT 621 (732)
Q Consensus 614 ~~l~~d~~ 621 (732)
.++..|+.
T Consensus 419 ~~vm~~~~ 426 (451)
T PLN03004 419 QEIIGECP 426 (451)
T ss_pred HHHhcCHH
Confidence 66666643
No 317
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00035 Score=72.49 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 191 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 191 (732)
+|..+.....+.+..+.|...|.+|++..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 466666777777778888888988887666677888888888666 5566669999999999989888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 192 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 192 ~g~~~eA~~~l~~al~~~p~~~---~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
.++.+.|...|++++..-+... .+|........+.|+.+...+.++++.+..|+..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999988766544 5788888888899999999999999999888743
No 318
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.81 E-value=6.5e-05 Score=63.65 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=65.8
Q ss_pred EEecCCCCCC-cccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 004753 553 ISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLR 631 (732)
Q Consensus 553 i~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr 631 (732)
|+|.+..++| +..++|+|++|+|||+-.-. +..-+-.-|...+...|.++.+++...|.+||+.++.+++..+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~------~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSP------GLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChH------HHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4566666644 56899999999999984321 1111111244556678999999999999999999999999999
Q ss_pred HHhhcCCCCChHHHHHHH
Q 004753 632 DLMSKSPVCDGQNFALGL 649 (732)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~ 649 (732)
+.+.+. ++.+..+.++
T Consensus 75 ~~v~~~--~t~~~~~~~i 90 (92)
T PF13524_consen 75 ERVLKR--HTWEHRAEQI 90 (92)
T ss_pred HHHHHh--CCHHHHHHHH
Confidence 988754 6777766655
No 319
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0013 Score=66.51 Aligned_cols=161 Identities=14% Similarity=-0.004 Sum_probs=125.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh-CCCC---HHHHH
Q 004753 40 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-NWHY---ADAMY 115 (732)
Q Consensus 40 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~ 115 (732)
...+.+....|++.+|....++.++-.|.+-.+...--.+++. .|+.+.-...+++.+.. +++. ..+.-
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-------~G~~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-------NGNQIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-------ccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 3445667778999999999999999999886555444444444 55888888888888866 5554 44555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH
Q 004753 116 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTV 191 (732)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 191 (732)
.++-.+...|-|++|++..++++++++.+..+...++.++...++++++.+...+.-..-... ..-|..-+.++..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 677778899999999999999999999999999999999999999999999988754332211 1134456778888
Q ss_pred cCCHHHHHHHHHHHHH
Q 004753 192 QGKMDAAAEMIEKAIA 207 (732)
Q Consensus 192 ~g~~~eA~~~l~~al~ 207 (732)
.+.|+.|++.|.+-+-
T Consensus 260 ~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 260 GAEYEKALEIYDREIW 275 (491)
T ss_pred ccchhHHHHHHHHHHH
Confidence 8999999999987653
No 320
>PLN02764 glycosyltransferase family protein
Probab=97.76 E-value=0.00046 Score=75.85 Aligned_cols=183 Identities=9% Similarity=0.001 Sum_probs=107.2
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNH 542 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~----~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~ 542 (732)
+.+.|+|.||++...++++-+.-.+.=|.....--+|++..+.+.+ .+.+.+..+....| +++.+|.| +.
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG-----~v~~~W~P-Q~ 328 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG-----VVWGGWVQ-QP 328 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC-----cEEeCCCC-HH
Confidence 4577999999999888887777777676677777888886432111 12233444333333 46778988 55
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHh-hhcCCCccc------cCCHHHHHHHHHH
Q 004753 543 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLI------AKNEDEYVQLALQ 615 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l-~~~gl~~~i------a~~~~~y~~~a~~ 615 (732)
+.++ +..++.|+ ..+|.+|++||+++|||+|+++--. -...-+.++ ..+|+.--+ .-+.++..+...+
T Consensus 329 ~vL~-h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~-DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~ 403 (453)
T PLN02764 329 LILS-HPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLG-DQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINS 403 (453)
T ss_pred HHhc-CcccCeEE---ecCCchHHHHHHHcCCCEEeCCccc-chHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHH
Confidence 5553 35566776 2477889999999999999988421 122233333 223432111 1266777766667
Q ss_pred hhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 004753 616 LASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKG 663 (732)
Q Consensus 616 l~~d~-~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 663 (732)
+..+. +..+++|++.++..... .+...--+.+++..+. |.+.+.+
T Consensus 404 vm~~~~~~g~~~r~~a~~~~~~~--~~~GSS~~~l~~lv~~-~~~~~~~ 449 (453)
T PLN02764 404 VMKRDSEIGNLVKKNHTKWRETL--ASPGLLTGYVDNFIES-LQDLVSG 449 (453)
T ss_pred HhcCCchhHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHH-HHHhccc
Confidence 77664 45556666665432221 1222233455555444 4455544
No 321
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00021 Score=69.00 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=47.2
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
-|+.++...+|+.|+.+|-+++.++|..+..|.+.+.++++.++++.+..-.++++++.|+....++.+|........|+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 004753 163 KAVECYQMAL 172 (732)
Q Consensus 163 ~A~~~~~~al 172 (732)
+|+..++++.
T Consensus 96 eaI~~Lqra~ 105 (284)
T KOG4642|consen 96 EAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555553
No 322
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00058 Score=66.11 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 207 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~eA~~~l~~al~ 207 (732)
.++..-|+-+++.|+|++|...|+.|+.. .|.. ...+.|++.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45566677777778888887777777543 3433 33788999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 208 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 208 ~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
..|.+..+++..|.++...=+..+|..-|.++++++|.-..+...
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 999999999999999999999999999999999999986665443
No 323
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.00098 Score=69.15 Aligned_cols=132 Identities=10% Similarity=0.014 Sum_probs=108.5
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 160 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (732)
.+.......+..+.|...|+++.+..+....+|...|.+.+. .++.+.|.+.|+.+++..|.+...+......+...++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 333444455579999999999997666778999999999777 5666669999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004753 161 LDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 213 (732)
.+.|..+|++++..-+... .+|......-.+.|+.+...+..+++.+..|...
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999998866654 5888888888899999999999999999988743
No 324
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.70 E-value=0.0011 Score=74.67 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=107.7
Q ss_pred CcEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 470 FITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 470 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
.+||.+|++.. +..++.++...+.+++.|.-.+|-.++.. .. .++ +++|.+.+++| +.+.+
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----~~--------~~~-p~Nv~i~~w~P-q~~lL- 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----EA--------INL-PANVLTQKWFP-QRAVL- 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----Cc--------ccC-CCceEEecCCC-HHHHh-
Confidence 47788888764 46789999999999999975455433221 10 234 68999999988 55555
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc---CCHHHHHHHHHHhhcCHHHH
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~ 623 (732)
....+|+|+ ..+|..|+.||+++|||+|.++--. -...-+..+...|+...+- -+.++..+...++.+|+..+
T Consensus 361 ~hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~-DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~ 436 (507)
T PHA03392 361 KHKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMG-DQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYR 436 (507)
T ss_pred cCCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCc-cHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHH
Confidence 335688987 2477779999999999999988431 1222334455667654332 36778777777888998777
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 624 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 624 ~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
+..++ +.+.+.+.|.=-.+..+..+|.+.
T Consensus 437 ~~a~~-ls~~~~~~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 437 KNLKE-LRHLIRHQPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 76544 334444455434566666666654
No 325
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.70 E-value=0.0054 Score=64.92 Aligned_cols=189 Identities=14% Similarity=0.053 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHH-hhCCCCHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYERCL-AVSPNFEIAKN 74 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~~ 74 (732)
+...++=..|....+|+.-+++.+..-.. -++.....+..|.++.+ .|+.++|+..+..++ ...+.+++.+-
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 45566777888999999999999887665 44567788888999988 999999999999954 45556666666
Q ss_pred HHHHHHHHhhhh--HhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004753 75 NMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 152 (732)
Q Consensus 75 ~la~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (732)
..+.+|-.+-.. +......++|+..|.++.+.+|+ ...-.|++.++...|...+...-+++.. ..+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~l~ 290 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIG----------VKLS 290 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHH----------HHHH
Confidence 667766655322 12233477778888887777743 3333455555555554322222222111 1111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 004753 153 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 214 (732)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 214 (732)
..+.+.|..+ ...+...+..++.+..-.|++++|+++++++++..|....
T Consensus 291 ~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 291 SLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1111222111 1122334445566666677777777777777776655543
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00052 Score=66.33 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004753 115 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 194 (732)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 194 (732)
..-|..++..++|+.|+.+|.+++.++|..+..+.+.+.++++.++++.+..-.++++++.|+....++.+|........
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34466777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 004753 195 MDAAAEMIEKAIAA 208 (732)
Q Consensus 195 ~~eA~~~l~~al~~ 208 (732)
+++|+..++++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999765
No 327
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.0014 Score=72.23 Aligned_cols=165 Identities=17% Similarity=0.070 Sum_probs=118.2
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
...++|+..+|+ .|.-+-++++.-.++... .++++.|.| +....+.++....++ ++++.+.-... ..-..
T Consensus 292 ~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g--d~~le~~~~~la~~~---~~~~~~~i~~~-~~la~ 363 (487)
T COG0297 292 LPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG--DPELEEALRALASRH---PGRVLVVIGYD-EPLAH 363 (487)
T ss_pred CCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC--cHHHHHHHHHHHHhc---CceEEEEeeec-HHHHH
Confidence 356789999999 999999999999999887 899999887 567778888877777 44555444432 34455
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc------------------CCH
Q 004753 546 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA------------------KNE 606 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia------------------~~~ 606 (732)
..|..+|++|-|+-| +-|.|-++||..|++.|.+ ++| ||.+-|. .|.
T Consensus 364 ~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~-------~tG-------GLadTV~~~~~~~~~~~gtGf~f~~~~~ 429 (487)
T COG0297 364 LIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVR-------ETG-------GLADTVVDRNEWLIQGVGTGFLFLQTNP 429 (487)
T ss_pred HHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEc-------ccC-------CccceecCccchhccCceeEEEEecCCH
Confidence 678999999999999 6689999999999876653 344 5544333 244
Q ss_pred HHH---HHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 607 DEY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 607 ~~y---~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
+++ +.+|+.+-.+++.. +|...+..|. .-|++..-+..+.+.|+.+..
T Consensus 430 ~~l~~al~rA~~~y~~~~~~--w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~ 480 (487)
T COG0297 430 DHLANALRRALVLYRAPPLL--WRKVQPNAMG--ADFSWDLSAKEYVELYKPLLS 480 (487)
T ss_pred HHHHHHHHHHHHHhhCCHHH--HHHHHHhhcc--cccCchhHHHHHHHHHHHHhc
Confidence 444 33455555665442 3444444443 458899999999999998764
No 328
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.66 E-value=0.00062 Score=75.28 Aligned_cols=146 Identities=15% Similarity=0.062 Sum_probs=91.0
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
+.+.|+|.||++..+++++.+.-.+.-|...+..-||.+..+.. .+...+.+-.-|.++ + .+|..+.+|+| +.+.+
T Consensus 262 ~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-~-~~~g~v~~w~P-Q~~iL 338 (451)
T PLN02410 262 KKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-I-SGRGYIVKWAP-QKEVL 338 (451)
T ss_pred CCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-c-cCCeEEEccCC-HHHHh
Confidence 34679999999999999999999999999999999998864311 011111122222222 2 46777789988 55544
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhc-CCCccc--cCCHHHHHHHHHHhhcCH
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLASDV 620 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~-gl~~~i--a~~~~~y~~~a~~l~~d~ 620 (732)
+ +..+..|+ ..+|-+|++||+++|||+|+++--. -...-+..+... |+.--+ .-+.++..+...++..|+
T Consensus 339 ~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 339 S-HPAVGGFW---SHCGWNSTLESIGEGVPMICKPFSS-DQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred C-CCccCeee---ecCchhHHHHHHHcCCCEEeccccc-cCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCC
Confidence 3 34455576 2477889999999999999988421 122223333221 322111 125566666555666664
No 329
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.64 E-value=0.00013 Score=52.30 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 44 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 44 (732)
+++++.+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567778888888888888888888888888888887777764
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.62 E-value=0.035 Score=59.61 Aligned_cols=116 Identities=11% Similarity=0.165 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC-------
Q 004753 110 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPN------- 177 (732)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~------- 177 (732)
....+...+.+..+.|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..++. ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 345677777777888888888888877776542 13566777777778888888888877777661 000
Q ss_pred --------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004753 178 --------------------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 225 (732)
Q Consensus 178 --------------------------~~~~~~~la~~~~~~------g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~ 225 (732)
.+.++..+|...... +..+++++.|+++++.+|+...+|+.+|..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 012444555555555 666777777777777777777777776666544
No 331
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.62 E-value=0.0021 Score=70.69 Aligned_cols=142 Identities=10% Similarity=0.032 Sum_probs=91.6
Q ss_pred CCCcEEEecCCCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 468 NGFITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 468 ~~~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+..++|.++++... ....+.+...+.+...+.-.++..|..... . ..+ +++|.+.++++ ..+
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----~--------~~~-~~~v~~~~~~p-~~~--- 300 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----A--------EDL-PDNVRVVDFVP-HDW--- 300 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----c--------cCC-CCceEEeCCCC-HHH---
Confidence 45678888887743 445677888888877765556665543111 1 233 68899999976 444
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcCHHHH
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 623 (732)
++..||+++ ..+|.+|+.|||++|||+|.++-.. -.-.-+..+...|..-.+.. +.++..+...++.+++ .+
T Consensus 301 ll~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~-dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~ 375 (401)
T cd03784 301 LLPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFG-DQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SR 375 (401)
T ss_pred Hhhhhheee---ecCCchhHHHHHHcCCCEEeeCCCC-CcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HH
Confidence 455599998 3467789999999999999986432 12334556667776544433 5677776666777754 44
Q ss_pred HHHHHHHH
Q 004753 624 ANLRMSLR 631 (732)
Q Consensus 624 ~~~r~~lr 631 (732)
++.++..+
T Consensus 376 ~~~~~~~~ 383 (401)
T cd03784 376 RRAAALLR 383 (401)
T ss_pred HHHHHHHH
Confidence 44444333
No 332
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.61 E-value=0.017 Score=61.33 Aligned_cols=189 Identities=19% Similarity=0.148 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHH-HHhCCC
Q 004753 35 YAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-LYYNWH 109 (732)
Q Consensus 35 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~ 109 (732)
.+....++-..|....+|+.-+++.+..-.+ .++.......+|.++... ...|+.++|+..+..+ ....+.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr----n~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR----NKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc----ccCCCHHHHHHHHHHHHhccCCC
Confidence 4566777888899999999999998887665 333444455555555542 2267999999999884 455667
Q ss_pred CHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004753 110 YADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 180 (732)
Q Consensus 110 ~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 180 (732)
+++.+..+|.+|... ...++|+..|.++.+.+|+ ...-.|++.++...|.-.+...-+++..
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~-------- 286 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIG-------- 286 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHH--------
Confidence 788888888888542 2345666666666666643 2333344444444443222222222111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 250 (732)
..+...+.+.|..+ .-.+...+-.++.+..-.|++++|.+++++++++.|..-...
T Consensus 287 --~~l~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 287 --VKLSSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred --HHHHHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 11111122222111 123344555678888889999999999999999988765433
No 333
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.61 E-value=0.0013 Score=73.69 Aligned_cols=108 Identities=14% Similarity=0.008 Sum_probs=71.0
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+++.++|.||++...+++..+.-.+.-|...+...||.++.+.........+-+-+.++-. ...|++.+|.| +.+.+.
T Consensus 283 ~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~P-Q~~iL~ 360 (482)
T PLN03007 283 KPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAP-QVLILD 360 (482)
T ss_pred CCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCC-HHHHhc
Confidence 3466899999999888777777777788888988899887532110111111112222211 35678889987 444443
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecC
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~ 580 (732)
- ..+..|+ ..+|-+|++||+++|||+|+++
T Consensus 361 h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 361 H-QATGGFV---THCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred c-Cccceee---ecCcchHHHHHHHcCCCeeecc
Confidence 3 2233465 2477889999999999999987
No 334
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.61 E-value=0.0014 Score=73.09 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=74.7
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~----~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
.+.+||.||++...++++.++-.+.-|...+...||.++.+.... .+-..+.++.. ...+++.+|.| +.+
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-----~~g~~v~~w~P-Q~~ 355 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-----GRGLVIRGWAP-QVA 355 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-----cCCEEecCCCC-HHH
Confidence 456899999999999999999999999999999999886432110 11123322222 24567789987 445
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC
Q 004753 544 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~ 580 (732)
.+. ...+++|+ ..+|.+|++||+++|||+|+++
T Consensus 356 vL~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 356 ILS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred Hhc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCC
Confidence 443 34577887 2478889999999999999987
No 335
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.59 E-value=0.0016 Score=72.88 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=72.3
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 542 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~ 542 (732)
.+.++|.||++...+.++.++..+..|...+...||.++.+... ..+.+.+.++. .+|..+.+|.| +.
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~------~~rg~v~~w~P-Q~ 351 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRV------MGRGLVCGWAP-QV 351 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHh------ccCeeeeccCC-HH
Confidence 45689999999988899999999999999999889987643111 01112333222 25566779987 44
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC
Q 004753 543 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~ 580 (732)
+.+ .+..++.|| ..+|-+|++||+++|||+|+++
T Consensus 352 ~iL-~h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 352 EIL-AHKAIGGFV---SHCGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred HHh-cCcccCeEE---eeCCcccHHHHHHcCCCEEecc
Confidence 444 334466676 2477889999999999999987
No 336
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.59 E-value=0.016 Score=66.09 Aligned_cols=229 Identities=21% Similarity=0.247 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhhCC
Q 004753 3 PAYYNLGVVYSEL-----MQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRG-----DLESAIACYERCLAVSP 67 (732)
Q Consensus 3 ~a~~~lg~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p 67 (732)
.+.+.+|.++..- .+.++|+.+|+.+.+. .-.++.+.+.+|.+|.+.. +++.|+.+|.++-+...
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~ 324 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN 324 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC
Confidence 3556777777653 6899999999999771 1125568889999999843 78889999999988764
Q ss_pred CCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 004753 68 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPH 143 (732)
Q Consensus 68 ~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 143 (732)
.+ +.+.++.++.. |. ...++.+|.++|..|.+. .+..+.+.++.+|.. ..+...|..++.++.+.+
T Consensus 325 ~~--a~~~lg~~~~~-g~---~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-- 394 (552)
T KOG1550|consen 325 PD--AQYLLGVLYET-GT---KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-- 394 (552)
T ss_pred ch--HHHHHHHHHHc-CC---ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--
Confidence 43 44555554443 21 224678999999998754 578889999988875 357899999999999887
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Q 004753 144 CAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAE 214 (732)
Q Consensus 144 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~ 214 (732)
.+.+...++..+... +.+..+.-.+....+..-..+. .+......... ..+.+.+...+.++. ...+..
T Consensus 395 ~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~ 472 (552)
T KOG1550|consen 395 NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNAD 472 (552)
T ss_pred ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHH
Confidence 455555555544432 6666666555544443222111 11111111111 124455555555553 334566
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 004753 215 AYNNLGVLYRDA----GSISLAIDAYEQCLKID 243 (732)
Q Consensus 215 ~~~~La~~~~~~----g~~~eA~~~~~~al~l~ 243 (732)
+...||.+|..- .+++.|...|.++....
T Consensus 473 a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 473 AILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 777777777654 34777777777776655
No 337
>PLN00164 glucosyltransferase; Provisional
Probab=97.58 E-value=0.00098 Score=74.49 Aligned_cols=140 Identities=15% Similarity=0.116 Sum_probs=87.1
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-------CHH----HHHHHHHHHHHcCCCCCcEEEcC
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDS----VRHRFLSTLEQLGLESLRVDLLP 536 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-------~~~----~~~~~~~~~~~~Gv~~~rv~~~~ 536 (732)
.+.++|.||++...++++.++-.+.-|...+...||.+..+.. +.. +-+.+.++.+.. .+++.+
T Consensus 271 ~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-----g~~v~~ 345 (480)
T PLN00164 271 PASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGR-----GLVWPT 345 (480)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCC-----CeEEee
Confidence 4568999999998899999999999999999988998864311 001 112333333222 256678
Q ss_pred CcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC--CCcccccchhHHh-hhcCCCcccc--------CC
Q 004753 537 LILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLIA--------KN 605 (732)
Q Consensus 537 ~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~s~l-~~~gl~~~ia--------~~ 605 (732)
|.| +.+.+.- ..+..|| ..+|-+|++||+++|||+|+++ ++.+ .-+.++ ..+|+.-.+. -+
T Consensus 346 w~P-Q~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~~~~~~gvG~~~~~~~~~~~~~~ 417 (480)
T PLN00164 346 WAP-QKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQH---LNAFELVADMGVAVAMKVDRKRDNFVE 417 (480)
T ss_pred cCC-HHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccch---hHHHHHHHHhCeEEEeccccccCCcCc
Confidence 887 4555433 3333565 2477889999999999999987 3322 222222 3445542221 14
Q ss_pred HHHHHHHHHHhhcCH
Q 004753 606 EDEYVQLALQLASDV 620 (732)
Q Consensus 606 ~~~y~~~a~~l~~d~ 620 (732)
.++-.+...++..|+
T Consensus 418 ~e~l~~av~~vm~~~ 432 (480)
T PLN00164 418 AAELERAVRSLMGGG 432 (480)
T ss_pred HHHHHHHHHHHhcCC
Confidence 555555555666654
No 338
>PLN00414 glycosyltransferase family protein
Probab=97.57 E-value=0.00096 Score=73.71 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=93.0
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC----CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 542 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~----~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~ 542 (732)
+++.|+|.||++...++++-+.-.+.=|.....--||++..+.+ .+.+.+.+.++....| +++.+++| +.
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~P-Q~ 323 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVE-QP 323 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCC-HH
Confidence 45779999999999888555554444455555556788754311 1123345555554444 36678887 55
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhh-hcCCCcccc------CCHHHHHHHHHH
Q 004753 543 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQLALQ 615 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~-~~gl~~~ia------~~~~~y~~~a~~ 615 (732)
+.+. +..++.|| -.+|.+|++||+++|||+|+++--. -....+.++. .+|+.--+. -+.++..+...+
T Consensus 324 ~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~ 398 (446)
T PLN00414 324 LILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLA-DQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKS 398 (446)
T ss_pred HHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCccc-chHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHH
Confidence 5443 34456676 2478889999999999999988421 1223344443 345542221 256666666666
Q ss_pred hhcCH-HHHHHHHHHHHH
Q 004753 616 LASDV-TALANLRMSLRD 632 (732)
Q Consensus 616 l~~d~-~~~~~~r~~lr~ 632 (732)
+..|+ +..+++|++.++
T Consensus 399 ~m~~~~e~g~~~r~~a~~ 416 (446)
T PLN00414 399 VMDKDSEIGNLVKRNHKK 416 (446)
T ss_pred HhcCChhhHHHHHHHHHH
Confidence 66553 445555655554
No 339
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.56 E-value=0.00017 Score=51.65 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 220 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La 220 (732)
++..+|.+|..+|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444444
No 340
>PLN02210 UDP-glucosyl transferase
Probab=97.56 E-value=0.0014 Score=72.70 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=87.9
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
+..++|.||++..+.+++.++..+.-|...+...||.++...... ....+ .+. +..+|..+.++.| +.+.+..
T Consensus 268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~-~~~~~----~~~-~~~~~g~v~~w~P-Q~~iL~h 340 (456)
T PLN02210 268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQ-NVQVL----QEM-VKEGQGVVLEWSP-QEKILSH 340 (456)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcccc-chhhH----Hhh-ccCCCeEEEecCC-HHHHhcC
Confidence 456899999999999999999999999999998899876432111 11122 222 1125556678987 5554433
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecCC--CcccccchhHHhhh-cCCCcccc-------CCHHHHHHHHHHhh
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 617 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~s~l~~-~gl~~~ia-------~~~~~y~~~a~~l~ 617 (732)
..++.|| -.+|-+|++||+++|||+|+++- +.+ +-+.++.. +|+.-.+. -+.++-.+...++.
T Consensus 341 -~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 341 -MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---IDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred -cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 3345776 23777899999999999999883 322 23334433 44432221 24555555555555
Q ss_pred cCH
Q 004753 618 SDV 620 (732)
Q Consensus 618 ~d~ 620 (732)
.++
T Consensus 414 ~~~ 416 (456)
T PLN02210 414 EGP 416 (456)
T ss_pred cCc
Confidence 553
No 341
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.53 E-value=0.0025 Score=71.42 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=73.7
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----------C--HHHHHHHHHHHHHcCCCCCcEEE
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-----------C--DSVRHRFLSTLEQLGLESLRVDL 534 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----------~--~~~~~~~~~~~~~~Gv~~~rv~~ 534 (732)
.+.++|.||++...++++.++..+.-|.+.+.-.||.+..+.. + +.+.+.+.++ + .+|+.+
T Consensus 273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-----~-~~~g~v 346 (481)
T PLN02554 273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR-----T-KDIGKV 346 (481)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH-----h-ccCceE
Confidence 4568999999999999999999999999999988888753210 0 0011222222 2 367777
Q ss_pred cCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCC
Q 004753 535 LPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 581 (732)
Q Consensus 535 ~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g 581 (732)
.+|.| +.+.+ .+..++.|+ ..+|-+|++||+++|||+|+++-
T Consensus 347 ~~W~P-Q~~iL-~H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 347 IGWAP-QVAVL-AKPAIGGFV---THCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred EeeCC-HHHHh-CCcccCccc---ccCccchHHHHHHcCCCEEecCc
Confidence 89987 55555 335566676 24777899999999999999883
No 342
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.51 E-value=0.025 Score=63.10 Aligned_cols=153 Identities=15% Similarity=0.064 Sum_probs=99.4
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004753 89 LEGDINQGVAYYKKALYYNWHYAD-------AMYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 157 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (732)
-.|+-+.+++.+.++.+...-... .|+.....+. .....+.|.+.++...+..|+..-.++..|.++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 467888888888887663222211 1111111111 23456778888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCH---
Q 004753 158 RDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSI--- 229 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-~~~~~La~~~~~~g~~--- 229 (732)
.|+.++|++.|++++....... -+++.++.++..+++|++|.+++.+..+.+.-.. -..+..|-++...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 8888888888887774333222 2567778888888888888888888777654432 3445567777777777
Q ss_pred ----HHHHHHHHHHHh
Q 004753 230 ----SLAIDAYEQCLK 241 (732)
Q Consensus 230 ----~eA~~~~~~al~ 241 (732)
++|.++|+++-.
T Consensus 360 ~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPK 375 (468)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 555555555533
No 343
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.51 E-value=0.1 Score=54.06 Aligned_cols=227 Identities=13% Similarity=-0.025 Sum_probs=144.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CC----CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhC-------CCCHHHHHH
Q 004753 12 YSELMQYDTALGCYEKAALER----PM----YAEAYCNMGVIYKNRG-DLESAIACYERCLAVS-------PNFEIAKNN 75 (732)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~----p~----~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~-------p~~~~~~~~ 75 (732)
...+|+++.|..++.|+-... |+ -...+++.|......+ ++++|...++++.++- ....+....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999986644 33 2457788888889999 9999999999999872 233344455
Q ss_pred HHHHHHHhhhhHhhcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHH
Q 004753 76 MAIALTDLGTKVKLEGDIN---QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACN 149 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~ 149 (732)
...++..++.+|...+..+ +|....+.+-...|+.+..+...-.++...++.+++.+.+.+++..-+ .+.....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 6777888888888776654 455566666666788788776666666668999999999999988644 2222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH---HHHHHcC--C------HHHHHHHHHHHHHh--CCCCH-
Q 004753 150 NLGVIYKDRDNLDKAVECYQMALSI--KPNFSQSLNNLG---VVYTVQG--K------MDAAAEMIEKAIAA--NPTYA- 213 (732)
Q Consensus 150 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la---~~~~~~g--~------~~eA~~~l~~al~~--~p~~~- 213 (732)
.....+.. .....|...+...+.. .|.... +.... .++...+ + .+.....+....+. .|-..
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 22222222 3445677777766654 222211 22222 2222222 2 22222333322221 22222
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 214 ------EAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 214 ------~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
..+.+.|.-.++.++|++|..+|+-++
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 235567888999999999999999776
No 344
>PLN02562 UDP-glycosyltransferase
Probab=97.50 E-value=0.002 Score=71.49 Aligned_cols=143 Identities=12% Similarity=0.083 Sum_probs=88.8
Q ss_pred CCcEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 469 GFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 469 ~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
+.++|.||++.. .+.++.++..+..|...+.-.||.+..+.. +.+.+.+.++ + ++|+.+.++.| +.+.++-
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~P-Q~~iL~h 344 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR-EGLPPGYVER-----V-SKQGKVVSWAP-QLEVLKH 344 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch-hhCCHHHHHH-----h-ccCEEEEecCC-HHHHhCC
Confidence 457899999864 789999999999999999988887754311 0111122221 2 47888889987 5555543
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecC--CCcccccchhHHhh-hcCCCccc-cCCHHHHHHHHHHhhcCHHHH
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLI-AKNEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~s~l~-~~gl~~~i-a~~~~~y~~~a~~l~~d~~~~ 623 (732)
..+-.|+ ..+|-+|++||+++|||+|+++ ++.+. -+..+. .+|+.=-+ --+.++..+...++..|++.+
T Consensus 345 -~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~---na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 345 -QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFV---NCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred -CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHH---HHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHH
Confidence 3344565 2477889999999999999987 33221 122221 12332001 135666555555666676655
Q ss_pred HHH
Q 004753 624 ANL 626 (732)
Q Consensus 624 ~~~ 626 (732)
+..
T Consensus 418 ~~a 420 (448)
T PLN02562 418 ERL 420 (448)
T ss_pred HHH
Confidence 543
No 345
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.50 E-value=0.00043 Score=78.55 Aligned_cols=162 Identities=16% Similarity=0.214 Sum_probs=89.7
Q ss_pred CCCcEEEecCCCCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 468 NGFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+..++|.||++..+..| +..+..++.+++.|...||-..+. .... + ++.+.+..|+| +.+.++
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~---------l-~~n~~~~~W~P-Q~~lL~ 338 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPEN---------L-PKNVLIVKWLP-QNDLLA 338 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCH---------H-HTTEEEESS---HHHHHT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cccc---------c-cceEEEecccc-chhhhh
Confidence 45678999999865444 458899999999999777765431 1111 1 35678889998 666664
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecC--CCcccccchhHHhhhcCCCcccc---CCHHHHHHHHHHhhcCHH
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 621 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~s~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~ 621 (732)
...+++|+ -.+|.+|+.||+++|||+|+++ |+.+ .-+..+...|....+- -+.++..+...++..|+.
T Consensus 339 -hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~---~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 339 -HPRVKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQP---RNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp -STTEEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHH---HHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHH
T ss_pred -cccceeee---eccccchhhhhhhccCCccCCCCcccCC---ccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhH
Confidence 45577786 1366779999999999999987 4422 2344556667653332 267888888888889987
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 622 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 622 ~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
..+..++ +++.+.+.|.=-.++.+..+|-+.
T Consensus 412 y~~~a~~-ls~~~~~~p~~p~~~~~~~ie~v~ 442 (500)
T PF00201_consen 412 YKENAKR-LSSLFRDRPISPLERAVWWIEYVA 442 (500)
T ss_dssp HHHHHHH-HHHTTT------------------
T ss_pred HHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6655433 444444444333444555555443
No 346
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.48 E-value=0.0073 Score=67.31 Aligned_cols=159 Identities=13% Similarity=0.007 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhh---Hh--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004753 49 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VK--LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 123 (732)
Q Consensus 49 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~---~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 123 (732)
.|+-+.+++.+.++.+ ..+-......+....+..... -. ...+.+.|.+.++...+..|+..-..+..|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5899999999999987 333322222332222222211 11 35678899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCH---
Q 004753 124 MLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKM--- 195 (732)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~--- 195 (732)
.|+.++|++.|++++..... ..-.++.++.++..+.+|++|..++.+..+.+.-.. ...+..|.++...++.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 99999999999998854332 245678999999999999999999999998765543 3556678888899998
Q ss_pred ----HHHHHHHHHHHHh
Q 004753 196 ----DAAAEMIEKAIAA 208 (732)
Q Consensus 196 ----~eA~~~l~~al~~ 208 (732)
++|.+++.++-..
T Consensus 360 ~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 7777777776544
No 347
>PLN02208 glycosyltransferase family protein
Probab=97.48 E-value=0.0019 Score=71.34 Aligned_cols=151 Identities=11% Similarity=0.063 Sum_probs=91.5
Q ss_pred CCCCcEEEecCCCCcCCHH-HHHHHHHH-HhHcCCcEEEEecCCCC----CHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 004753 467 TNGFITFGSFNNLAKITPK-VLQVWARI-LCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILL 540 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~l~~~~~~----~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~ 540 (732)
+++.|+|.||++..++.++ +.++...+ +...|- +|+...+.+ .+.+-+.+..+.... .+++.+|.|
T Consensus 249 ~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~~-----g~~v~~W~P- 320 (442)
T PLN02208 249 PPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKGR-----GVVWGGWVQ- 320 (442)
T ss_pred CCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhcC-----CcEeeccCC-
Confidence 3467899999999988887 77777776 777786 565542211 112233444444333 356778987
Q ss_pred cHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC--CCcccccchhHHhhh-cCCCcccc------CCHHHHHH
Q 004753 541 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTK-VGLKHLIA------KNEDEYVQ 611 (732)
Q Consensus 541 ~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~s~l~~-~gl~~~ia------~~~~~y~~ 611 (732)
+.+.++ ...+..|+ -.+|-++++||+++|||+|+++ ++.+ .-+.++.. +|+.--+- -+.++..+
T Consensus 321 Q~~iL~-H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~---~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ 393 (442)
T PLN02208 321 QPLILD-HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQV---LFTRLMTEEFEVSVEVSREKTGWFSKESLSN 393 (442)
T ss_pred HHHHhc-CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhH---HHHHHHHHHhceeEEeccccCCcCcHHHHHH
Confidence 555553 34455676 2477789999999999999988 3322 22333332 45542221 15556555
Q ss_pred HHHHhhcCH-HHHHHHHHHHHH
Q 004753 612 LALQLASDV-TALANLRMSLRD 632 (732)
Q Consensus 612 ~a~~l~~d~-~~~~~~r~~lr~ 632 (732)
...++..++ +..+++|++.++
T Consensus 394 ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 394 AIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 555666554 445566666554
No 348
>PLN02207 UDP-glycosyltransferase
Probab=97.46 E-value=0.0031 Score=69.92 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=74.9
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
+++.++|.||++...+.++.++..+.-|...+...||.+..+.. .+.+-+.+.++ + .+|+.+.+|.| +.+.
T Consensus 273 ~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-----~-~~~g~i~~W~P-Q~~I 345 (468)
T PLN02207 273 PEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-----V-SGRGMICGWSP-QVEI 345 (468)
T ss_pred CCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-----c-CCCeEEEEeCC-HHHH
Confidence 34678999999999999999999999999999999998864311 11111232222 2 46777779987 5555
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~ 580 (732)
++- ..+..|+ -.+|-++++||+++|||+|+++
T Consensus 346 L~H-~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P 377 (468)
T PLN02207 346 LAH-KAVGGFV---SHCGWNSIVESLWFGVPIVTWP 377 (468)
T ss_pred hcc-cccceee---ecCccccHHHHHHcCCCEEecC
Confidence 543 4455566 2477789999999999999987
No 349
>PLN03015 UDP-glucosyl transferase
Probab=97.46 E-value=0.0012 Score=72.78 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=75.6
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--------CH----HHHHHHHHHHHHcCCCCCcEEEc
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--------CD----SVRHRFLSTLEQLGLESLRVDLL 535 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--------~~----~~~~~~~~~~~~~Gv~~~rv~~~ 535 (732)
.+.|+|.||++...++++.++..+.-|...+...||.+..+.. .+ .+-+++.++....| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 4678999999999999999999999999999999999853210 00 12234444433333 4677
Q ss_pred CCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCC
Q 004753 536 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 581 (732)
Q Consensus 536 ~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g 581 (732)
+|.| +.+.+. +..+..|+ -.+|.+|++||+++|||+|+++-
T Consensus 341 ~W~P-Q~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 341 QWAP-QVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred ecCC-HHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence 8887 556554 34555676 24778899999999999999873
No 350
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.06 Score=57.51 Aligned_cols=224 Identities=16% Similarity=0.106 Sum_probs=136.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------CH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH---HHHHHH
Q 004753 14 ELMQYDTALGCYEKAALERPM------YA--------EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNM 76 (732)
Q Consensus 14 ~~g~~~~A~~~~~~al~~~p~------~~--------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 76 (732)
..|-+++|.++-++++..... .. ..+-.+..|-.-.|++.+|++....+.+.....+ .....-
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 456677787777777654211 11 2344556677778999999999888877643333 233344
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-------AE 146 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 146 (732)
+.+.+-+|......+.++.|...|..+.+.-... +....++|..|...++-+.-.+.++..-..+... ..
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~ 446 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEAS 446 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHH
Confidence 5666777777777888899998888888764332 2345678888888776655444444332222111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH-
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---PTYAEAY- 216 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---p~~~~~~- 216 (732)
+++..|...+.++++.||...+.+.++..... +..+..++.+....|+..++.+...-+++.. |+.+..+
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence 56666777777888888888888877764211 2244556666677777777777766666553 3332222
Q ss_pred --HHHHHHHHHcCC--HHHHHHHHH
Q 004753 217 --NNLGVLYRDAGS--ISLAIDAYE 237 (732)
Q Consensus 217 --~~La~~~~~~g~--~~eA~~~~~ 237 (732)
..+-.+|...|+ .++..+.|.
T Consensus 527 s~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 527 SSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHhCcchhhHHHHHHH
Confidence 224445555555 444444443
No 351
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.40 E-value=0.0037 Score=64.85 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=60.2
Q ss_pred cEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 471 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 471 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
.++.+++-. .+++..+++...++ .++..+ ++.|.+. +..+++++..+.. .+|.+.+.+ .+...+
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~---~~~~~i~vv~G~~~---~~~~~l~~~~~~~----~~i~~~~~~---~~m~~l 238 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAES---QINISITLVTGSSN---PNLDELKKFAKEY----PNIILFIDV---ENMAEL 238 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhcc---ccCceEEEEECCCC---cCHHHHHHHHHhC----CCEEEEeCH---HHHHHH
Confidence 345566533 45566666655543 233333 4556543 2345666655543 478887774 466777
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecC
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~ 580 (732)
+..+|+++- .||+|+.|++++|+|+|..+
T Consensus 239 m~~aDl~Is----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 239 MNEADLAIG----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred HHHCCEEEE----CCchHHHHHHHcCCCEEEEE
Confidence 888999995 47799999999999999864
No 352
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.39 E-value=0.0028 Score=70.63 Aligned_cols=135 Identities=14% Similarity=0.085 Sum_probs=85.3
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
.+.++|.||++.....++.++..+..|+..+.-.||..... ...+.+. ..+|+.+.++.| +.+.+..
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------~~~~~~~------~~~~~~v~~w~p-Q~~iL~h 339 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------ASRLKEI------CGDMGLVVPWCD-QLKVLCH 339 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc------hhhHhHh------ccCCEEEeccCC-HHHHhcc
Confidence 45689999999988999999999999999988778855322 0111111 136788889987 5555543
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhh-cCCCccc--------cCCHHHHHHHHHHhhc
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLI--------AKNEDEYVQLALQLAS 618 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~-~gl~~~i--------a~~~~~y~~~a~~l~~ 618 (732)
..+..|+ ..+|.+|++||+++|||+|+++--. -...-+..+.. +|+.--+ .-+.++-.+...++..
T Consensus 340 -~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 340 -SSVGGFW---THCGWNSTLEAVFAGVPMLTFPLFW-DQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred -CccceEE---ecCchhHHHHHHHcCCCEEeccccc-cchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 3344466 2477889999999999999988321 11122222322 2332112 1256666666666666
Q ss_pred CH
Q 004753 619 DV 620 (732)
Q Consensus 619 d~ 620 (732)
|+
T Consensus 415 ~~ 416 (459)
T PLN02448 415 LE 416 (459)
T ss_pred CC
Confidence 53
No 353
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.39 E-value=0.00023 Score=75.65 Aligned_cols=103 Identities=24% Similarity=0.287 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004753 149 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 228 (732)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~ 228 (732)
-+-+.-.+..+.++.|+..|.++++++|+.+..+.+.+.++.+.+++..|+.-+.++++.+|....+|+..|.++...++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34455666778899999999999999999988888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHH
Q 004753 229 ISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 229 ~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
+.+|...|++...+.|+++.+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHH
Confidence 99999999999999998877643
No 354
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.38 E-value=0.00019 Score=48.07 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=16.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 202 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 233 (732)
Q Consensus 202 l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~ 233 (732)
|+++++++|+++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 355
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.37 E-value=0.0002 Score=48.00 Aligned_cols=34 Identities=53% Similarity=0.794 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 004753 24 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 57 (732)
Q Consensus 24 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 57 (732)
+|+++++.+|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 356
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.35 E-value=0.0029 Score=69.80 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=86.3
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+.+.++|.||++...++++.++..+.-|...| .||.+..+. .+.+.+.+.+ . +..+++.+.+|.| +.+.++
T Consensus 262 ~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~-~~~lp~~~~~----~-~~~~~~~i~~W~P-Q~~iL~ 332 (449)
T PLN02173 262 PQGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE-ESKLPPGFLE----T-VDKDKSLVLKWSP-QLQVLS 332 (449)
T ss_pred CCCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc-hhcccchHHH----h-hcCCceEEeCCCC-HHHHhC
Confidence 34568999999999999999999988887766 678775321 1111112222 1 2246788889988 555443
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhh-cCCCcccc-------CCHHHHHHHHHHhhc
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLAS 618 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~-~gl~~~ia-------~~~~~y~~~a~~l~~ 618 (732)
+..+..|| -.+|.+|++||+++|||+|+++--. -...-+.++.. +|+.--|. -+.++..+...++..
T Consensus 333 -H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~-DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~ 407 (449)
T PLN02173 333 -NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWT-DQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVME 407 (449)
T ss_pred -CCccceEE---ecCccchHHHHHHcCCCEEecCchh-cchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhc
Confidence 34455666 2478889999999999999988321 12223333432 13221111 156666666666665
Q ss_pred CH
Q 004753 619 DV 620 (732)
Q Consensus 619 d~ 620 (732)
|+
T Consensus 408 ~~ 409 (449)
T PLN02173 408 GE 409 (449)
T ss_pred CC
Confidence 53
No 357
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.35 E-value=0.00034 Score=46.85 Aligned_cols=33 Identities=42% Similarity=0.660 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPM 34 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 34 (732)
|++|+++|.++..+|++++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 345666666666666666666666666666554
No 358
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.33 E-value=0.001 Score=71.02 Aligned_cols=132 Identities=11% Similarity=0.041 Sum_probs=86.6
Q ss_pred CcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc
Q 004753 470 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 549 (732)
Q Consensus 470 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~ 549 (732)
..+++..+++.|.. .+ ....|+.+|++.|.|.. +. .. .++|.|.|+++ .++....|.
T Consensus 169 ~~~i~yaG~l~k~~--~l------~~~~~~~~l~i~G~g~~----~~---------~~-~~~V~f~G~~~-~eel~~~l~ 225 (333)
T PRK09814 169 QKKINFAGNLEKSP--FL------KNWSQGIKLTVFGPNPE----DL---------EN-SANISYKGWFD-PEELPNELS 225 (333)
T ss_pred CceEEEecChhhch--HH------HhcCCCCeEEEECCCcc----cc---------cc-CCCeEEecCCC-HHHHHHHHh
Confidence 34677778888642 11 11358889999997732 11 23 47899999998 577777776
Q ss_pred cccEEecCC------------CCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhh
Q 004753 550 LMDISLDTF------------PYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA 617 (732)
Q Consensus 550 ~~Di~Ld~~------------~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~ 617 (732)
. |+.|-+. .++...-+.++|++|+|||+....... .+... +-.++++++.++..+....+
T Consensus 226 ~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~-----~~V~~-~~~G~~v~~~~el~~~l~~~- 297 (333)
T PRK09814 226 K-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA-----DFIVE-NGLGFVVDSLEELPEIIDNI- 297 (333)
T ss_pred c-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH-----HHHHh-CCceEEeCCHHHHHHHHHhc-
Confidence 6 6444221 244455688899999999985543221 22333 44566777888888777775
Q ss_pred cCHHHHHHHHHHHHHH
Q 004753 618 SDVTALANLRMSLRDL 633 (732)
Q Consensus 618 ~d~~~~~~~r~~lr~~ 633 (732)
+++.+.++++..+..
T Consensus 298 -~~~~~~~m~~n~~~~ 312 (333)
T PRK09814 298 -TEEEYQEMVENVKKI 312 (333)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 457788888888764
No 359
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0062 Score=61.85 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC
Q 004753 35 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE----IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 110 (732)
Q Consensus 35 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 110 (732)
.+..+-.-|+-|++..+|..|+..|.+.|+..-.++ ..+.+.+.+...++ +|..|+.-+.+++.++|.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-------NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-------NYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHhcCcch
Confidence 455666778888888888888888888887654433 34556666766665 8888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 142 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 142 (732)
..+++.-+.+++.++++++|..+++..+.++.
T Consensus 153 ~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 153 LKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 88888888888888888888888888766543
No 360
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.32 E-value=0.00038 Score=74.09 Aligned_cols=124 Identities=17% Similarity=0.227 Sum_probs=100.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 004753 116 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 195 (732)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 195 (732)
+-+.-.+.-+.++.|+..|.++++++|+++..+-+.+..+.+.+++..|+.-+.++++++|....+|+..|.++...+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44555667788999999999999999999888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 196 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 196 ~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
.+|...|++...+.|+++.+...+..|-... ...-|++++-..+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v-----s~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKIV-----SEEKFEKAILTPE 132 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH-----HHHhhhhcccCCc
Confidence 9999999999999999888877766664322 2334555554444
No 361
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.32 E-value=0.062 Score=56.19 Aligned_cols=170 Identities=24% Similarity=0.263 Sum_probs=120.9
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 004753 46 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-- 123 (732)
Q Consensus 46 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 123 (732)
....+++..|...+.++-.... ......++..+..- .....+..+|.++|+.+. ...++.+.+.+|.+|..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~--~~a~~~l~~~y~~g---~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGD--AAALALLGQMYGAG---KGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGR 123 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCC--hHHHHHHHHHHHhc---cCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCC
Confidence 3456788888888888766222 12333333333321 123456888999999544 55678888999999887
Q ss_pred --cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 004753 124 --MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-- 191 (732)
Q Consensus 124 --~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 191 (732)
..+..+|..+|+++.+..... ..+.+.++..|..-. +...|...|.++-... ++.+...+|.+|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL 201 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC
Confidence 558999999999998875443 345778888777642 3347888888887665 77888899988765
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004753 192 --QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 227 (732)
Q Consensus 192 --~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g 227 (732)
..++++|..+|+++.+... ....+.++ ++...|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 4588999999999988766 78888888 666655
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.32 E-value=0.076 Score=61.02 Aligned_cols=231 Identities=16% Similarity=0.097 Sum_probs=135.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPM---------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 76 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (732)
...+.....+.++.+|..+..++...-+. .+......|.+....|++++|+++.+.++..-|.+. +...
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--~~~r 496 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--YRSR 496 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--chhh
Confidence 34556667788888888888887654332 234455667788888889999999888888877653 3344
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC----H--HHHHHHHHHHHHcCC--HHHHHHHHHHHHh----cCCCC
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----A--DAMYNLGVAYGEMLK--FDMAIVFYELAFH----FNPHC 144 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~--~~~~~la~~~~~~g~--~~~A~~~~~~al~----~~p~~ 144 (732)
..++..+|....-.|++++|..+.+++.+..... - -+....+.++..+|+ +.+.+..+...-. ..|..
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5667777777888888888888888887763322 1 233445667777773 2333333322221 22332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H---
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIK----PNF--SQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-A--- 213 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~~-~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~--- 213 (732)
.......+.++...-+++.+..-..+.++.. |.. .. .++.++.++...|++++|...+.+...+..+. +
T Consensus 577 ~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 577 EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2233333333333233555555555554442 221 11 23477788888888888888777776552221 1
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 214 ---EAYNNLGVLYRDAGSISLAIDAYEQ 238 (732)
Q Consensus 214 ---~~~~~La~~~~~~g~~~eA~~~~~~ 238 (732)
.++.........+|+..+|.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1112222333456777777766665
No 363
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.04 Score=54.36 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCH
Q 004753 15 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 93 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~ 93 (732)
...-..|+++-+.++..+|-+..+|...-.++..++ +..+-++++...++.+|++...+...-.+...++ +.
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-------d~ 128 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-------DP 128 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-------Cc
Confidence 344455555555555556655555555544444432 3455555555555555655554444333333322 33
Q ss_pred H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC-----CHHHHHH
Q 004753 94 N-QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RD-----NLDKAVE 166 (732)
Q Consensus 94 ~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~ 166 (732)
. .-++..+.++..+.++-.+|...-.+...-+.++.-+.+..+.++.+-.+-.+|+..-.+... .| ..+.-+.
T Consensus 129 s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 3 445555555555555555555555555555556665666555555544443333322111111 01 1233344
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 167 CYQMALSIKPNFSQSLNNLGVVYTV 191 (732)
Q Consensus 167 ~~~~al~~~p~~~~~~~~la~~~~~ 191 (732)
+..+.+.+.|++..+|+.|.-++..
T Consensus 209 yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 209 YTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHh
Confidence 5555555566666666555555543
No 364
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0068 Score=61.59 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 117 LGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
-|+-|++.++|..|...|.++|+..-. ++..|.|.+-+....|+|..|+.-..+++.++|.+..+++.-+.+++.+
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 344455555555555555555544221 1334445555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHh
Q 004753 193 GKMDAAAEMIEKAIAA 208 (732)
Q Consensus 193 g~~~eA~~~l~~al~~ 208 (732)
.++.+|..+++..+.+
T Consensus 167 e~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 5555555555554433
No 365
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.29 E-value=0.00056 Score=45.65 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPM 34 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 34 (732)
|++|+.+|.+++.+|++++|++.|+++++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 345666666666666666666666666666654
No 366
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.014 Score=58.91 Aligned_cols=137 Identities=15% Similarity=0.075 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVY 189 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 189 (732)
.+.-+.-+.-....|++.+|...+..++...|++..+...++.+|...|+.+.|...+...=....+. ...+......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34455566677888999999999999999999999999999999999999999988876532211111 11111111223
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 190 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 190 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
.+.....+. ..+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+-+..+
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 333332222 2355666789999999999999999999999999999999888665443
No 367
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.28 E-value=0.00043 Score=46.31 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 214 ~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666777777777777777777777777665
No 368
>PLN02555 limonoid glucosyltransferase
Probab=97.27 E-value=0.0041 Score=69.23 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=72.6
Q ss_pred CCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH-HHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 469 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV-RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 469 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~-~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
..++|.||++...+.++.+.-.+..|...+...||.+..+...... ...+-+.+.+ .+ .+|+.+.+|.| +.+.+ .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~P-Q~~iL-~ 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCP-QEKVL-A 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCC-HHHHh-C
Confidence 4578999999989999999988889999988888887532110000 0111111211 13 46788889987 44444 3
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecC
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~ 580 (732)
+..+..|+ ..+|.+|++||+++|||+|+++
T Consensus 353 H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P 382 (480)
T PLN02555 353 HPSVACFV---THCGWNSTMEALSSGVPVVCFP 382 (480)
T ss_pred CCccCeEE---ecCCcchHHHHHHcCCCEEeCC
Confidence 46677787 2477889999999999999987
No 369
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0065 Score=59.07 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhC
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 107 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 107 (732)
..++...|+-++..|+|.+|...|..|+.. .|..++ -++++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-------------------------------W~eLd 226 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-------------------------------WLELD 226 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-------------------------------HHHHH
Confidence 357788899999999999999999998753 232221 11222
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 180 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 180 (732)
......+.|+..++...|+|-++++.....+...|.+..+|+..|.+....=+.++|..-|.++++++|....
T Consensus 227 k~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 227 KMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 2334455666666666666666666666666666666666666666666666666666666666666665443
No 370
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.25 E-value=0.00066 Score=45.28 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 214 ~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
++++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776653
No 371
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.21 E-value=0.11 Score=55.68 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=141.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHhhh
Q 004753 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA--KNNMAIALTDLGT 85 (732)
Q Consensus 8 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~lg~ 85 (732)
.+.+....|+++.-.+..... ..+.....+..+......++++++..+.+++...--+.... .......|-.+..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 356778899999833333222 22234666777777779999999999999887652211100 0000111111110
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH--HHHHHHHHHh----cCCCCHHHHHHHHHHH
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDM--AIVFYELAFH----FNPHCAEACNNLGVIY 155 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~--A~~~~~~al~----~~p~~~~~~~~la~~~ 155 (732)
.....+.+++..+....... +.. ...|...-. ....+++- -+-.++..+- ........+..++.+.
T Consensus 81 -lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a 156 (352)
T PF02259_consen 81 -LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA 156 (352)
T ss_pred -HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 01112334444333221100 000 001111100 00111111 1111111111 2344577889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-C------------------
Q 004753 156 KDRDNLDKAVECYQMALSIKP----NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NP-T------------------ 211 (732)
Q Consensus 156 ~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p-~------------------ 211 (732)
.+.|+++.|...+.++...++ ..+......+.++...|+..+|+..++..+.. .. .
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 999999999999999987652 25678888999999999999999999888871 10 0
Q ss_pred --------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCChhHHHHHH
Q 004753 212 --------------YAEAYNNLGVLYRDA------GSISLAIDAYEQCLKIDPDSRNAGQNRL 254 (732)
Q Consensus 212 --------------~~~~~~~La~~~~~~------g~~~eA~~~~~~al~l~p~~~~a~~~~~ 254 (732)
...++..+|...... +..+++...|+++.+++|+...++....
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 134566677777777 8889999999999999999887766543
No 372
>PLN02534 UDP-glycosyltransferase
Probab=97.21 E-value=0.0035 Score=69.95 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=72.5
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH-HHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF-LSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~-~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+..|+|.||++...+.++-+.-.+.-|...+...||.+..+...+.....+ -+-|.+. +...++++.++.| +.+.++
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~p-q~~iL~ 359 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAP-QVLILS 359 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCC-HHHHhc
Confidence 457899999999999998888888999999999999986321111111111 0122222 2235678889988 444443
Q ss_pred hcccccE--EecCCCCCCcccHHHhhhcCCCeeecCC
Q 004753 547 AYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG 581 (732)
Q Consensus 547 ~~~~~Di--~Ld~~~~~g~~t~~eal~~GvPvvt~~g 581 (732)
- .+| |+ ..+|.+|++||+++|||+|+++-
T Consensus 360 h---~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 360 H---PAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred C---CccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 3 444 55 24788899999999999999885
No 373
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.21 E-value=0.0087 Score=66.20 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHH--HHHHHHcCCCCCcEEEcCCcCC
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRF--LSTLEQLGLESLRVDLLPLILL 540 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~~--~~~~~~~Gv~~~rv~~~~~~~~ 540 (732)
.+.|+|.||++...+..+.++-.+.-|...|...||.+.++... ......+ -+.+.++ + .+|..+.+|.|
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~P- 336 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCS- 336 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCC-
Confidence 45789999999999999999999999999999999988642110 0000010 1112221 2 46777789987
Q ss_pred cHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCC
Q 004753 541 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 581 (732)
Q Consensus 541 ~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g 581 (732)
+.+.++- ..+-.|+ -.+|.+|++||+++|||+|+++-
T Consensus 337 Q~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~ 373 (455)
T PLN02152 337 QIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPM 373 (455)
T ss_pred HHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 5554433 3334565 24788899999999999999873
No 374
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.18 E-value=0.015 Score=64.33 Aligned_cols=211 Identities=13% Similarity=0.147 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKA------ALE----RPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 72 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 72 (732)
.|-.-|..+-+..++++|+++|++. +++ .|.. ...-...|.-+.+.|+++.|+..|-++-.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~------ 736 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI------ 736 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH------
Confidence 4455667777788888888888763 222 2321 1222344666777888888887776653211
Q ss_pred HHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004753 73 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 152 (732)
Q Consensus 73 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (732)
..-.......++.+|+..++..-..+ .....|-.++.-|...|+|+.|.++|.++- ....-.
T Consensus 737 ---------kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai 798 (1636)
T KOG3616|consen 737 ---------KAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAI 798 (1636)
T ss_pred ---------HHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHH
Confidence 11111111345666665555433221 112234456666777777777777776542 222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHH-------------HHHHH------HH----h
Q 004753 153 VIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAE-------------MIEKA------IA----A 208 (732)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~-------------~l~~a------l~----~ 208 (732)
..|-+.|++++|.+..+++.. |.. ...|...+.-+-..|++.+|.+ +|++. +. .
T Consensus 799 ~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh
Confidence 455666777777666665532 222 2234444444445555544433 33322 11 1
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 209 NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 209 ~p~~-~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
.++. .+.+..+|.-|...|+.++|...|-++-
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 2222 4567788888888999998888877664
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.18 E-value=0.097 Score=60.21 Aligned_cols=203 Identities=16% Similarity=0.058 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
+..-..|.+....|++++|+++.+.++..-|.+ ..++..+|.+..-.|++++|..+..++.+....+. .+....
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-~~~l~~ 537 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD-VYHLAL 537 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-cHHHHH
Confidence 344457888899999999999999999987753 45788899999999999999999999998866554 333345
Q ss_pred HHHHHhhhhHhhcCCHH--HHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC--H
Q 004753 78 IALTDLGTKVKLEGDIN--QGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--A 145 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~--~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~ 145 (732)
.+....+.+...+|+.. +....+...- ...|.........+.++...-+++.+..-..+.++. .|.. .
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 55566677777788333 3333333222 223443334444444444444477777766666655 2222 2
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 146 -EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----SQS--LNNLGVVYTVQGKMDAAAEMIEKAI 206 (732)
Q Consensus 146 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~--~~~la~~~~~~g~~~eA~~~l~~al 206 (732)
.++++++.++...|++++|...+.+...+..+. ..+ +.-.......+|+.++|.....+..
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 233589999999999999999999887663222 111 1222233456899999998888753
No 376
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.013 Score=54.36 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 180 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 180 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666778888899999999999999999999999999999999999999999999888754
No 377
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.15 E-value=0.012 Score=62.97 Aligned_cols=140 Identities=18% Similarity=0.229 Sum_probs=88.3
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCC
Q 004753 480 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 559 (732)
Q Consensus 480 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 559 (732)
.++.|.++++..++.++.|+-++++-..+ ....+.+.+.+...+.... +.+.. .+-...+..+|+.|
T Consensus 199 ~rllP~~l~aa~~l~~~~p~l~fvvp~a~---~~~~~~i~~~~~~~~~~~~-~~~~~-----~~~~~~m~~ad~al---- 265 (373)
T PF02684_consen 199 KRLLPIFLEAAKLLKKQRPDLQFVVPVAP---EVHEELIEEILAEYPPDVS-IVIIE-----GESYDAMAAADAAL---- 265 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCC---HHHHHHHHHHHHhhCCCCe-EEEcC-----CchHHHHHhCcchh----
Confidence 56669999999999999999999986543 1233335555555555322 33221 12344556699998
Q ss_pred CCCcccHHHhhhcCCCeeecCCC-cccccchhHH--hhhcCCCcccc------------CCHHHHHHHHHHhhcCHHHHH
Q 004753 560 YAGTTTTCESLYMGVPCVTMAGS-VHAHNVGVSL--LTKVGLKHLIA------------KNEDEYVQLALQLASDVTALA 624 (732)
Q Consensus 560 ~~g~~t~~eal~~GvPvvt~~g~-~~~~r~~~s~--l~~~gl~~~ia------------~~~~~y~~~a~~l~~d~~~~~ 624 (732)
-..||.|+|+..+|+|.|...=- .+--.++-.+ ...+||+.+|+ .+++...+.+..+..|++.+.
T Consensus 266 ~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 266 AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRK 345 (373)
T ss_pred hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHH
Confidence 56799999999999997764432 2211122122 12356655443 477888888888999987755
Q ss_pred HHHHHHHH
Q 004753 625 NLRMSLRD 632 (732)
Q Consensus 625 ~~r~~lr~ 632 (732)
..+...+.
T Consensus 346 ~~~~~~~~ 353 (373)
T PF02684_consen 346 KQKELFRE 353 (373)
T ss_pred HHHHHHHH
Confidence 54444433
No 378
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.14 E-value=0.26 Score=51.50 Aligned_cols=169 Identities=29% Similarity=0.335 Sum_probs=122.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh
Q 004753 13 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 88 (732)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 88 (732)
...+++..|...+.++-.. ....+...++.+|..- .+..+|.++|+++.+ ..+......++..+.. |.-
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~-G~g-- 124 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYAN-GRG-- 124 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhc-CCC--
Confidence 3567888899988887662 2347788888888763 468899999996544 3344455555544432 211
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---
Q 004753 89 LEGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEML-------KFDMAIVFYELAFHFNPHCAEACNNLGVIYKD--- 157 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 157 (732)
...+..+|..+|+++.+..-.. ..+.+.++.+|..-. +...|...|.++-... +..+...+|.+|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 2449999999999999875444 344788888887642 2347999999988766 67899999988865
Q ss_pred -cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004753 158 -RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193 (732)
Q Consensus 158 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 193 (732)
..++++|..+|+++-+... ....+.++ ++...|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 4589999999999988776 78888888 666666
No 379
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.026 Score=56.96 Aligned_cols=129 Identities=15% Similarity=0.041 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhh
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 85 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 85 (732)
+..+.-....|++.+|...|..++...|.+..+...++.+|...|+.+.|...+...-....+.. ... ..+...+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~--l~a~i~ll~ 214 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHG--LQAQIELLE 214 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHH--HHHHHHHHH
Confidence 44556677888888888888888888888888888888888888888888877766432222211 111 011111111
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 141 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 141 (732)
-....++. ..+++.+..+|++.++-+.++..+...|+.++|.+.+-..++.+
T Consensus 215 qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 215 QAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 11111221 23444556677777777777777777777777777777766654
No 380
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.07 E-value=0.0058 Score=65.73 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=58.0
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCc----ccccchhHHhhhcCCCccccC---CHHHHHHHHH
Q 004753 543 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV----HAHNVGVSLLTKVGLKHLIAK---NEDEYVQLAL 614 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~----~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~ 614 (732)
+...+|..+|+++ . +|++|+.|++++|+|.|..+-.. .....-+..+...|....+.. +.+...+...
T Consensus 245 ~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~ 320 (352)
T PRK12446 245 ELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVE 320 (352)
T ss_pred hHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHH
Confidence 4556788899998 5 78999999999999999885322 123456677777887655543 5678888888
Q ss_pred HhhcCHHHHH
Q 004753 615 QLASDVTALA 624 (732)
Q Consensus 615 ~l~~d~~~~~ 624 (732)
++.+|++.++
T Consensus 321 ~ll~~~~~~~ 330 (352)
T PRK12446 321 ELSHNNEKYK 330 (352)
T ss_pred HHHcCHHHHH
Confidence 8888886654
No 381
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.07 E-value=0.0067 Score=64.32 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
++..++.+++..... ++ .++++..|+..+++.|.+. .. ...+.|.+.+.. ..++...
T Consensus 191 ~~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~------~~---------~~~~ni~~~~~~--~~~~~~~ 247 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNA------AD---------PRPGNIHVRPFS--TPDFAEL 247 (318)
T ss_pred CCCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCc------cc---------ccCCCEEEeecC--hHHHHHH
Confidence 445577787776442 33 4678889988888886541 00 015778887764 2577778
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCCeeecCCCc-ccccchhHHhhhcCCCccc
Q 004753 548 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLI 602 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~s~l~~~gl~~~i 602 (732)
+..||+++.. +|.+|++||+++|+|+|.++-.. .-.+.-+..|..+|+...+
T Consensus 248 m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~ 300 (318)
T PF13528_consen 248 MAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL 300 (318)
T ss_pred HHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc
Confidence 8889999832 77788999999999999988654 3455567888888887665
No 382
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.05 E-value=0.15 Score=55.28 Aligned_cols=151 Identities=11% Similarity=0.017 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 004753 92 DINQGVAYYKKALYYN-WHYADAMYNLGVAYGEML---KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVE 166 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~ 166 (732)
.-+++.++|++++..- ..+...++.++..-...- +++....++++++.+...+ .-++..+-..-.+..-.+.|..
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 3445555555554432 122333333333322222 2455555555555542222 2233333333344444555555
Q ss_pred HHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 167 CYQMALSIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 167 ~~~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
.|.++-+..-..-..+..-|.+ |...++.+-|.+.|+-.++..++.+..-......+...++-..|...|++++..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 5555544332222222222222 334556666666666666666666655555555555666666666666666554
No 383
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.03 E-value=0.0057 Score=65.47 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=84.5
Q ss_pred CCCCcEEEecCCCCcCC-H----HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 004753 467 TNGFITFGSFNNLAKIT-P----KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 541 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~ 541 (732)
..+..++.++.+..... + .+..+..++... ++..+++...+ .+.....+.+.+.+. ++|.+.+.++ +
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn--~p~~~~~i~~~l~~~----~~v~~~~~l~-~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHN--NPRGSDIIIEKLKKY----DNVRLIEPLG-Y 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S---HHHHHHHHHHHTT-----TTEEEE-----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecC--CchHHHHHHHHhccc----CCEEEECCCC-H
Confidence 45667788888887777 5 455555555555 67777776543 246677776666655 2999999987 7
Q ss_pred HHHHHhcccccEEecCCCCCCcccHH-HhhhcCCCeeecC--CCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhc
Q 004753 542 HDHMQAYSLMDISLDTFPYAGTTTTC-ESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 618 (732)
Q Consensus 542 ~~~~~~~~~~Di~Ld~~~~~g~~t~~-eal~~GvPvvt~~--g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~ 618 (732)
.+|+.+++.||+++ -+.| ++. ||.++|+|||++. |+...+|.. |-.-++..+.++-.+.+.+...
T Consensus 250 ~~~l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 89999999999997 5666 777 9999999999985 454445444 5555655667776666666665
Q ss_pred CH
Q 004753 619 DV 620 (732)
Q Consensus 619 d~ 620 (732)
+.
T Consensus 318 ~~ 319 (346)
T PF02350_consen 318 DK 319 (346)
T ss_dssp -H
T ss_pred Ch
Confidence 63
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.95 E-value=0.69 Score=53.73 Aligned_cols=269 Identities=14% Similarity=0.019 Sum_probs=169.2
Q ss_pred hhHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 004753 2 QPAYYNLGVVYS-ELMQYDTALGCYEKAALERPM--Y----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 74 (732)
Q Consensus 2 a~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 74 (732)
+.+++.+|.+++ +..++++|..++++++.+... . ..+.+.++.++.+.+... |...+++.++..........
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 356788998887 789999999999999876533 2 235567788888888777 99999999987665321111
Q ss_pred HHHHHHHHh-hhhHhhcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 004753 75 NMAIALTDL-GTKVKLEGDINQGVAYYKKALYYN--WHYADA----MYNLGVAYGEMLKFDMAIVFYELAFHFN------ 141 (732)
Q Consensus 75 ~la~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~------ 141 (732)
. .++..+ .......+++..|++.++...... ..+..+ ....+.+....+..+++++.++++....
T Consensus 138 ~--~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~ 215 (608)
T PF10345_consen 138 Y--YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLD 215 (608)
T ss_pred H--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccC
Confidence 1 111112 112222279999999999998776 344432 2334556667777888888888775431
Q ss_pred CC----CHHHHHHHHH--HHHHcCCHHHHHHHHHHH---Hhh---CC---C---C-----------------H-------
Q 004753 142 PH----CAEACNNLGV--IYKDRDNLDKAVECYQMA---LSI---KP---N---F-----------------S------- 179 (732)
Q Consensus 142 p~----~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~---~p---~---~-----------------~------- 179 (732)
++ ...++..+-. ++...|+++.+...+++. ++. .+ . + +
T Consensus 216 ~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~ 295 (608)
T PF10345_consen 216 PSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLP 295 (608)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecC
Confidence 11 1333433332 345677776666655443 221 11 0 0 0
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-------------------HHHHHHHHHHHHHcC
Q 004753 180 ------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-------Y-------------------AEAYNNLGVLYRDAG 227 (732)
Q Consensus 180 ------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-------~-------------------~~~~~~La~~~~~~g 227 (732)
-++.--|......+..++|.++++++++.-.+ . ..+.+.++.+..-.+
T Consensus 296 ~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~ 375 (608)
T PF10345_consen 296 KEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRG 375 (608)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCc
Confidence 02333355566677777888888888764111 0 112345677777889
Q ss_pred CHHHHHHHHHHHHhhCCCC-------hhHHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 228 SISLAIDAYEQCLKIDPDS-------RNAGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 228 ~~~eA~~~~~~al~l~p~~-------~~a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
++.+|....+.+....... ......++.++.+...|+.+.|...+.
T Consensus 376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 9999999998877653322 235556778888888898887776654
No 385
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.94 E-value=0.29 Score=53.23 Aligned_cols=138 Identities=19% Similarity=0.073 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHH
Q 004753 125 LKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAA 199 (732)
Q Consensus 125 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~ 199 (732)
...+++.++|++++..-. .+...++.++..-... ++++....++++++.+...++. ++..+-..-.+..-...|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 345778888888876432 2344444444333222 2477888888888887544433 5666666666777788899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhcc
Q 004753 200 EMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 262 (732)
Q Consensus 200 ~~l~~al~~~p~~~~~~~~La~~-~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~ 262 (732)
..|.++-+..-....++..-|.+ |.-.++.+-|...|+-.++..++.+.....++.-+.++.+
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc
Confidence 99999877644433444443333 4567899999999999999999988776666655555543
No 386
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.038 Score=54.51 Aligned_cols=177 Identities=14% Similarity=0.103 Sum_probs=137.5
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 45 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 124 (732)
Q Consensus 45 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 124 (732)
++.+..+-..|+++-+.++.++|.+...+...-.++..+. .+..+-++++...++.+|++-.+|...-.+....
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l 125 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELL 125 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence 4445556678888888899999988877776666666654 3678889999999999999999999888888888
Q ss_pred CCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-c-----CCHHH
Q 004753 125 LKFD-MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-Q-----GKMDA 197 (732)
Q Consensus 125 g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~-----g~~~e 197 (732)
|+.. .-++..+.++..+..+..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|+..-.+... . -..+.
T Consensus 126 ~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~ 205 (318)
T KOG0530|consen 126 GDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELER 205 (318)
T ss_pred cCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHH
Confidence 8887 788889999999888999999888888888889999999999988776555555433211111 1 12345
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 004753 198 AAEMIEKAIAANPTYAEAYNNLGVLYRD-AG 227 (732)
Q Consensus 198 A~~~l~~al~~~p~~~~~~~~La~~~~~-~g 227 (732)
-+.+..+.+...|++..+|..|.-++.. .|
T Consensus 206 El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 206 ELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 5677888888899999999888888775 44
No 387
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.87 E-value=0.08 Score=54.17 Aligned_cols=261 Identities=16% Similarity=0.189 Sum_probs=142.3
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCC---chhhhccCCCCeEEec--cc---CCCCCCCC-------------CccEEEecCC
Q 004753 369 VAAMVREDKIDILVELTGHTANN---KLGMMACQPAPVQVTW--IG---YPNTTGLP-------------TIDYRITDSL 427 (732)
Q Consensus 369 ~~~~i~~d~~Dilvdl~g~t~~~---~~~~~a~r~Apvq~~~--~g---~p~t~g~~-------------~~Dy~~~d~~ 427 (732)
+.+..+.++-+=.+- |.-.+ -+.++..|.-|-|+.| || |-.++++. .|-++++-
T Consensus 31 vi~~a~~~r~~rff~---HGqFn~~lwlall~g~~~~~q~yWhiWGaDLYe~~~~lk~rlfy~lRR~aq~rvg~v~at-- 105 (322)
T PRK02797 31 VIAKAKANRAQRFFL---HGQFNPTLWLALLSGKIKPKQFYWHIWGADLYEESKGLKFRLFYPLRRLAQKRVGHVFAT-- 105 (322)
T ss_pred HHHHHhhCccceEEE---ecCCCHHHHHHHHhCCcCccceEEEEEChhhhhcccchhHHHHHHHHHHHHhhcCeEEEe--
Confidence 444445455554443 33322 2444556666778887 66 43334432 25555551
Q ss_pred CCCcCcccCCccceEEcCCCccccCCCCCCC-CCCCCCCCCCCCcE--EEecCCCCcCCHHHHHHHHHHHhHcCCcEEEE
Q 004753 428 ADPPETKQKHVEELIRLPECFLCYTPSPEAG-PVCPTPALTNGFIT--FGSFNNLAKITPKVLQVWARILCAVPNSRLVV 504 (732)
Q Consensus 428 ~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~--f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l 504 (732)
.|.-.+|.-+-...|+.+++|.+..... .......-+.+.+| .|+.+...-.|-+.++...+.. ..+.++++
T Consensus 106 ---rGD~~~~a~~~~~v~~~llyfpt~m~~~l~~~~~~~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~ 180 (322)
T PRK02797 106 ---RGDLSYFAQRHPKVPGSLLYFPTRMDPSLNTMANDRQRAGKMTILVGNSGDRSNRHIEALRALHQQF--GDNVKIIV 180 (322)
T ss_pred ---cchHHHHHHhcCCCCccEEecCCcchhhhccccccccCCCceEEEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEE
Confidence 1222333444445555544333221110 11111112233444 4544444554455555544443 34555555
Q ss_pred e-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCC
Q 004753 505 K-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGS 582 (732)
Q Consensus 505 ~-~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~ 582 (732)
- |-|.+++.-.+++++...++.- ++++..+.....-.+|+++++.|||..--+.- -|--|+|=.+.+|+||+.....
T Consensus 181 PlsYp~gn~~Yi~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n 259 (322)
T PRK02797 181 PMGYPANNQAYIEEVRQAGLALFG-AENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDN 259 (322)
T ss_pred ECCcCCCCHHHHHHHHHHHHHhcC-cccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCC
Confidence 3 4444677888899888888765 47777665544479999999999999877765 4444889999999999985544
Q ss_pred cccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 583 VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 583 ~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
++ -..|...|++=|...+ .. |....++.++++...-...-.|..+.++..+.++|+..
T Consensus 260 ~f-----wqdl~e~gv~Vlf~~d--~L---------~~~~v~e~~rql~~~dk~~I~Ff~pn~~~~W~~~l~~~ 317 (322)
T PRK02797 260 PF-----WQDLTEQGLPVLFTGD--DL---------DEDIVREAQRQLASVDKNIIAFFSPNYLQGWRNALAIA 317 (322)
T ss_pred ch-----HHHHHhCCCeEEecCC--cc---------cHHHHHHHHHHHHhhCcceeeecCHhHHHHHHHHHHHh
Confidence 33 2457778888542222 11 22222233333332221222377888887777777653
No 388
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.057 Score=51.19 Aligned_cols=116 Identities=24% Similarity=0.173 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 129 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 202 (732)
Q Consensus 129 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l 202 (732)
+.....++....++.+. .+...++..+...+++++|+..++.++....+. .-+-..|+.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555555565543 244667888999999999999999998654332 235678999999999999999988
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 203 EKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 203 ~~al~~~p~~-~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
..... +.. +..-...|.++...|+.++|+..|+++++..++.
T Consensus 150 ~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 76522 222 2334568999999999999999999999987543
No 389
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.85 E-value=0.037 Score=51.15 Aligned_cols=113 Identities=20% Similarity=0.206 Sum_probs=60.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 41 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGV 119 (732)
Q Consensus 41 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~ 119 (732)
..|......++.+.++..+++++.+.....-.- .. ... .......++.. ...+...++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~---------~~-----~~~W~~~~r~~l~~~------~~~~~~~l~~ 70 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPD---------LD-----DEEWVEPERERLREL------YLDALERLAE 70 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGG---------GT-----TSTTHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCC---------CC-----ccHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 345556667788888888888887754332100 00 001 11111122221 1234455566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 120 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 173 (732)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 173 (732)
.+...|++++|+..+++++..+|.+..++..+..++...|+..+|++.|++..+
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 666666677777777777777776666666666667777777766666666543
No 390
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=96.85 E-value=0.025 Score=64.67 Aligned_cols=175 Identities=13% Similarity=0.126 Sum_probs=108.7
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHh--Hc--CCcEEEEecCCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILC--AV--PNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~l~~~~~~~~----~~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
.+.+++|...|+ +|...-++....++++ .. .+.++++.|++...+ .+.+.+....++-.+ ++||+|+..
T Consensus 387 pd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~~ 465 (601)
T TIGR02094 387 PDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLEN 465 (601)
T ss_pred CCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEcC
Confidence 456789988898 8988888888777765 22 357888888774321 244444444443334 579999865
Q ss_pred cCCcHHHH--HhcccccEEec-CCC-C-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc---------
Q 004753 538 ILLNHDHM--QAYSLMDISLD-TFP-Y-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--------- 603 (732)
Q Consensus 538 ~~~~~~~~--~~~~~~Di~Ld-~~~-~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--------- 603 (732)
- ..-+ ..+..+||+|. |+. + ..||+-+=||.-|.+.+|....-+..-.. |-++|.-
T Consensus 466 Y---d~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~-------~~nGf~f~~~~~~~~~ 535 (601)
T TIGR02094 466 Y---DINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD-------GDNGWAIGDGEEYDDE 535 (601)
T ss_pred C---CHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC-------CCcEEEECCCcccccc
Confidence 3 2333 35788999999 775 8 77999999999999999876532222111 2233332
Q ss_pred -----CCHHHHHHH---HH-HhhcC-HHH--HHHHHHHHHHHhhc-CCCCChHHHHHHHHHHH
Q 004753 604 -----KNEDEYVQL---AL-QLASD-VTA--LANLRMSLRDLMSK-SPVCDGQNFALGLESTY 653 (732)
Q Consensus 604 -----~~~~~y~~~---a~-~l~~d-~~~--~~~~r~~lr~~~~~-~~~~~~~~~~~~~e~~~ 653 (732)
.|.+++.+. ++ .+-.| ++. -..+.+.++..|.. .|.|++.++++++.+.|
T Consensus 536 ~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 536 EEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 344444433 33 33322 211 12334444444433 46799999999998876
No 391
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.24 Score=57.50 Aligned_cols=225 Identities=16% Similarity=0.124 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHH
Q 004753 15 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 94 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 94 (732)
.++.+.|.++-+++ +.+..|..+|.+.++.|...+|++.|-++ +++..+.. .-......|.|+
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~e-------Vi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLE-------VIDVASRTGKYE 1150 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHH-------HHHHHHhcCcHH
Confidence 44555555554443 34556666666666666666666666554 22222222 222223345666
Q ss_pred HHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 004753 95 QGVAYYKKALYYN----------------------------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 146 (732)
Q Consensus 95 ~A~~~~~~al~~~----------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (732)
+-++++..+-+.. |+.+. .-..|.-++..+.|+.|.-+|.. ..
T Consensus 1151 dLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vS 1221 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VS 1221 (1666)
T ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hh
Confidence 6666655554332 11111 12233444444444444444432 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 226 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~ 226 (732)
-+..++..+..+|+|+.|....++| ++...|...+.++...+.+.-|.-+=-..+ -.++-+-.+...|...
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII----VHADELEELIEYYQDR 1292 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhc
Confidence 3444455555555555555555544 223344444444444333333221100000 0133455677788888
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 227 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 227 g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
|-+++-+..++.++-+..-+...... ++..| ..-.+++..+..+-++.
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTE--LaiLY-skykp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTE--LAILY-SKYKPEKMMEHLKLFWS 1340 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHH--HHHHH-HhcCHHHHHHHHHHHHH
Confidence 99999999998888776544433333 33333 23355555555544443
No 392
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.75 E-value=0.0014 Score=66.86 Aligned_cols=90 Identities=24% Similarity=0.280 Sum_probs=67.5
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 156 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 235 (732)
Q Consensus 156 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~ 235 (732)
+..|.+++|++.|..+++++|.....+...+.++.++++...|+.-+..+++++|+...-|-..+.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCC
Q 004753 236 YEQCLKIDPD 245 (732)
Q Consensus 236 ~~~al~l~p~ 245 (732)
++.+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 7777776544
No 393
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.72 E-value=0.0044 Score=67.04 Aligned_cols=101 Identities=26% Similarity=0.320 Sum_probs=90.9
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 156 KDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 234 (732)
Q Consensus 156 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~ 234 (732)
...|+...|++++..|+...|.... ...+|+.++.+.|-...|-..+.+++.++...+-.++.+|..|..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 4579999999999999999886654 678999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHH
Q 004753 235 AYEQCLKIDPDSRNAGQNRLLA 256 (732)
Q Consensus 235 ~~~~al~l~p~~~~a~~~~~la 256 (732)
.|+++++++|++......+.+.
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999998876665443
No 394
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.72 E-value=0.13 Score=54.46 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=116.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 98 AYYKKALYYNWHYADAMYNLGVAYGEMLK------------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 165 (732)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (732)
.-+++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999988876655432 467788999999999999999998888888889999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC----C--------------CHHHHHHHHHHHH
Q 004753 166 ECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANP----T--------------YAEAYNNLGVLYR 224 (732)
Q Consensus 166 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~l~~al~~~p----~--------------~~~~~~~La~~~~ 224 (732)
+.+++++..+|++...|..+-..... .-.+++....|.+++..-. . ...++..+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888766554433 3357788888888776411 0 1234566778888
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 004753 225 DAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 225 ~~g~~~eA~~~~~~al~l~ 243 (732)
+.|..+.|+..++-.++++
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFN 184 (321)
T ss_pred HCCchHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 395
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.66 E-value=0.071 Score=57.16 Aligned_cols=142 Identities=16% Similarity=0.050 Sum_probs=99.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------C------------CCC---HHHHHHHHHH
Q 004753 104 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGVI 154 (732)
Q Consensus 104 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~~ 154 (732)
++.+|-+.+++..++.++..+|+.+.|.+++++|+-. + +.| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4668888999999999999999998888888888632 1 111 2344555667
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC
Q 004753 155 YKDRDNLDKAVECYQMALSIKPN-FSQSL-NNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAG 227 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~-~~la~~~~~~g~~~eA~~~l~~al~~~p-----~~~~~~~~La~~~~~~g 227 (732)
+.+.|-+..|.++.+-.+.++|. ++-.. ..+=....+.++++--++.++....... .-+..-+..+.++...+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 77888888888888888888887 66533 3333444566777777777766554211 12356667777777777
Q ss_pred CH---------------HHHHHHHHHHHhhCCC
Q 004753 228 SI---------------SLAIDAYEQCLKIDPD 245 (732)
Q Consensus 228 ~~---------------~eA~~~~~~al~l~p~ 245 (732)
+. ++|...+++|+...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 77 7788888888877764
No 396
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.65 E-value=0.003 Score=42.05 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 214 ~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
++++.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667777777777777777777777777764
No 397
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.64 E-value=0.095 Score=58.40 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=95.6
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH------HHHhcCC-----------------
Q 004753 87 VKLEGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYE------LAFHFNP----------------- 142 (732)
Q Consensus 87 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~p----------------- 142 (732)
|.+.|++++|.++.++.. .|.. ...|...+.-+-..|+|.+|.++|- +++....
T Consensus 801 y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhCh
Confidence 344566666666555543 2222 3456677778888999999998874 4444311
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC-----------------CHH--HHHH---------HHH
Q 004753 143 H-CAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPN-----------------FSQ--SLNN---------LGV 187 (732)
Q Consensus 143 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~-----------------~~~--~~~~---------la~ 187 (732)
+ ..+.+..+|.-+...|+.++|...|-++-.. ... +.. ..+. -..
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHH
Confidence 1 1234566788888899999999988766332 110 000 0000 012
Q ss_pred HHHHcCCHHHHHHHH------HHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 188 VYTVQGKMDAAAEMI------EKAIA-----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 188 ~~~~~g~~~eA~~~l------~~al~-----~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
++.+.|-.++|+... +-+.. .....++++..++..+...|++++|-+.|-.+++++.-+
T Consensus 959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 233444444444432 11111 123446788899999999999999999999999997654
No 398
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.63 E-value=0.0033 Score=41.90 Aligned_cols=31 Identities=48% Similarity=0.809 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERP 33 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 33 (732)
++|+.+|.++..+|++++|++.|+++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556666666666666666666666665555
No 399
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.019 Score=58.76 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=98.2
Q ss_pred HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EcCCcCCcHHHHHhcccccE--EecCCCCCC--cccHHHhh
Q 004753 496 AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHMQAYSLMDI--SLDTFPYAG--TTTTCESL 570 (732)
Q Consensus 496 ~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~-~~~~~~~~~~~~~~~~~~Di--~Ld~~~~~g--~~t~~eal 570 (732)
..|+-..++-|+| ++++...+...+... .+|. ..+|.. -+||...++.||+ +|-|+-.|= .+-++|-.
T Consensus 290 ~lP~llciITGKG----PlkE~Y~~~I~~~~~--~~v~~~tpWL~-aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMF 362 (444)
T KOG2941|consen 290 NLPSLLCIITGKG----PLKEKYSQEIHEKNL--QHVQVCTPWLE-AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMF 362 (444)
T ss_pred CCCcEEEEEcCCC----chhHHHHHHHHHhcc--cceeeeecccc-cccchhHhhccccceEeeecCcccCcchhHHHhh
Confidence 3477777777888 899999999999877 4444 446766 6899999999985 565654433 34689999
Q ss_pred hcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhc----CHHHHHHHHHHHHHH
Q 004753 571 YMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS----DVTALANLRMSLRDL 633 (732)
Q Consensus 571 ~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~----d~~~~~~~r~~lr~~ 633 (732)
-+|+||+++.=...-. |..-|.++++..|.++..+....|-+ |...+.+++..+++.
T Consensus 363 GcglPvcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 363 GCGLPVCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred cCCCceeeecchhHHH------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 9999999866443322 44458999999999999999999998 999999999999876
No 400
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.58 E-value=0.35 Score=50.16 Aligned_cols=162 Identities=13% Similarity=-0.003 Sum_probs=111.7
Q ss_pred HHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhhhhHhhcC-CHHHHHHHHHHHHHhC----CC---C------
Q 004753 46 YKNRGDLESAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEG-DINQGVAYYKKALYYN----WH---Y------ 110 (732)
Q Consensus 46 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~----p~---~------ 110 (732)
...+|+++.|..++.|+-... ...+.....++..+++.|......+ ++++|..+++++.++- +. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999998776 5566677889999999999999999 9999999999998872 11 1
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 004753 111 -ADAMYNLGVAYGEMLKFD---MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLN 183 (732)
Q Consensus 111 -~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 183 (732)
..++..++.+|...+.++ +|.++.+.+-...|+.+..+...-.++.+.++.+++.+.+.+++...+-. .....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 235677888888877654 45555555655677777777555555656788888888888887654311 11111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 004753 184 NLGVVYTVQGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 184 ~la~~~~~~g~~~eA~~~l~~al~~ 208 (732)
....- ........|...+.+.+..
T Consensus 163 ~~i~~-l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 163 HHIKQ-LAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHH-HHhhCcHHHHHHHHHHHHH
Confidence 11111 1223445666666666544
No 401
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.55 E-value=0.62 Score=49.81 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=116.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh-hcCCHH---HHHHHHHHHHHhCCCC---HHHH
Q 004753 42 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LEGDIN---QGVAYYKKALYYNWHY---ADAM 114 (732)
Q Consensus 42 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~-~~g~~~---~A~~~~~~al~~~p~~---~~~~ 114 (732)
+-....++++..+|..++.-...++|+.... ..+...--.+-.+.. ....+. +=+..++.+-..+-+. ..-+
T Consensus 304 ~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs-~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L 382 (549)
T PF07079_consen 304 LLSFKVKQVQTEEAKQYLALLKILDPRISVS-EKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYL 382 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCcchhh-hhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 3334456788888888888888888876522 222111111111111 111222 2233333333333322 2234
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhh---------CC---CCH
Q 004753 115 YNLGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSI---------KP---NFS 179 (732)
Q Consensus 115 ~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~~~ 179 (732)
..-|.-+.+.|. -++|++.++.+++..+.+....+..-. .-...|.+|+. .+-+.+.+ .| .+.
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 556777888887 889999999999998887644332211 11122333322 11122111 12 233
Q ss_pred HHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 180 QSLNNLG--VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 180 ~~~~~la--~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
+.-+.++ ..++.+|+|.++.-+-.=..++.| ++.++..+|.++....+|++|..++.+.
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4445554 446789999999999998999999 8999999999999999999999998764
No 402
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.54 E-value=0.089 Score=56.44 Aligned_cols=169 Identities=14% Similarity=0.060 Sum_probs=109.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCC
Q 004753 29 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 108 (732)
Q Consensus 29 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 108 (732)
+..+|-+.+++..++.++..+|+.+.|.+++++|+-.....-.........-...|.+...- ..+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~---------------~~~ 97 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDY---------------RRP 97 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCC---------------ccc
Confidence 45689999999999999999999999999999997543211100000000000001000000 011
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC
Q 004753 109 HY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEA-CNNLGVIYKDRDNLDKAVECYQMALSIKP-----NF 178 (732)
Q Consensus 109 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~ 178 (732)
.| -.+.+.....+.+.|-+..|.++.+-.+.++|. ++.. .+.+-....+.++++--++.++....... ..
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 22 234556667778889999999999999999888 5543 34444555667778777777776554211 13
Q ss_pred HHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCC
Q 004753 179 SQSLNNLGVVYTVQGKM---------------DAAAEMIEKAIAANPTY 212 (732)
Q Consensus 179 ~~~~~~la~~~~~~g~~---------------~eA~~~l~~al~~~p~~ 212 (732)
|...+..+.++...++. ++|.+.+++|+...|.-
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 45667777888888887 89999999999987754
No 403
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.13 Score=48.90 Aligned_cols=98 Identities=18% Similarity=0.078 Sum_probs=66.6
Q ss_pred HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 80 LTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
...++..+...+++++|+..++.++....+. .-+-..++.+...+|++++|++.+...-..+ -.+......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 4456666777778888888888877543332 2355678888888888888888776542211 11233456688888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC
Q 004753 157 DRDNLDKAVECYQMALSIKPNF 178 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~ 178 (732)
..|+-++|...|+++++..++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 8888888888888888876443
No 404
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.50 E-value=0.0011 Score=67.53 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=85.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 004753 117 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 196 (732)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 196 (732)
.+.-.+..|++++|++.|..+++++|.....|...+.++.++++...|+.-+..+++++|+...-|-..+.+...+|+++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 34555678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 004753 197 AAAEMIEKAIAANP 210 (732)
Q Consensus 197 eA~~~l~~al~~~p 210 (732)
+|...+..+.+++-
T Consensus 200 ~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 200 EAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999987753
No 405
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.49 E-value=0.27 Score=56.26 Aligned_cols=182 Identities=21% Similarity=0.312 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-
Q 004753 52 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-----NWHYADAMYNLGVAYGEML- 125 (732)
Q Consensus 52 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g- 125 (732)
..+|.++++.+-+.. +..+...++.++..-+ +....+.+.|+.+++.+.+. ....+.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~--~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGT--YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhcc--ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 467888888876553 3334444454444321 23457999999999999771 1124557788888888743
Q ss_pred ----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Q 004753 126 ----KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGK 194 (732)
Q Consensus 126 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 194 (732)
+++.|+.+|.++-+.. ++.+.+.+|.++.... ++..|.++|..|.+ ..+..+.+.++.+|.. ..+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCC
Confidence 6788999998887764 3567778888877655 56788899888865 3456778888887764 357
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Q 004753 195 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKID 243 (732)
Q Consensus 195 ~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~-g~~~eA~~~~~~al~l~ 243 (732)
..+|..+++++.+.. .+.+...++.++..- +.+..+.-.+....++.
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 888999999988876 455555565555443 67776666666555543
No 406
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.47 E-value=0.14 Score=54.22 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 004753 93 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD---RDNLDKAVECYQ 169 (732)
Q Consensus 93 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 169 (732)
.+.-+..|++|++.+|++...+..+-....+..+.++..+.+++++..+|++...|..+-..... .-.+.+....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45678899999999999999999888888899999999999999999999998888766544433 335778888888
Q ss_pred HHHhhCC----C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 170 MALSIKP----N--------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 170 ~al~~~p----~--------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
++++.-. . ....+..+...+.+.|..+.|+..++-.++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8776411 0 02256677778889999999999999999985
No 407
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=1.1 Score=48.99 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHH
Q 004753 19 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 98 (732)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~ 98 (732)
+...+.+....+..|+++......+..+...|+.+.|+..++..++ +. -......+++.++.++.-+.+|.+|..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~---~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IR---MKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566667899888888889999999998889999988877 22 223335567778888888889999999
Q ss_pred HHHHHHHhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---cCCCC----------------------
Q 004753 99 YYKKALYYNWHYADAMYNLG-VAYGE--------MLKFDMAIVFYELAFH---FNPHC---------------------- 144 (732)
Q Consensus 99 ~~~~al~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~---~~p~~---------------------- 144 (732)
.+....+...-..-.|..++ .++.. .|+-++|..+.+...+ ..|.+
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~ 404 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNA 404 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccc
Confidence 99988876544433444443 33322 2344444444333222 11111
Q ss_pred --HH--HHHHHHHHHHH--cCCHHHHHHHHHHHHhh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C
Q 004753 145 --AE--ACNNLGVIYKD--RDNLDKAVECYQMALSI----KPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---P 210 (732)
Q Consensus 145 --~~--~~~~la~~~~~--~g~~~~A~~~~~~al~~----~p~~~-~~~~~la~~~~~~g~~~eA~~~l~~al~~~---p 210 (732)
.. .++.++.++.. ....++.. -++..++. ++++. --+..+|.++..+|+...|..+|+..++.. .
T Consensus 405 ~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~ 483 (546)
T KOG3783|consen 405 SILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT 483 (546)
T ss_pred cccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 11 12233322221 11222222 11111111 11211 145678999999999999999999887541 1
Q ss_pred C----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 004753 211 T----YAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 211 ~----~~~~~~~La~~~~~~g~-~~eA~~~~~~al~l~p~~ 246 (732)
. .|.+++.+|.+|..++. ..++.+++.+|-+...++
T Consensus 484 ~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 484 EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 1 26789999999999999 999999999998876554
No 408
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.44 E-value=0.021 Score=60.62 Aligned_cols=70 Identities=11% Similarity=0.206 Sum_probs=52.7
Q ss_pred CCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcc-cccchhHHhhhcCCCcccc
Q 004753 529 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH-AHNVGVSLLTKVGLKHLIA 603 (732)
Q Consensus 529 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~-~~r~~~s~l~~~gl~~~ia 603 (732)
.++|.+.++.+ .++...+..||+++.. +|.+|++||+++|+|+|..+-... -...-+..+...|+...+-
T Consensus 228 ~~~v~~~~~~~--~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~ 298 (321)
T TIGR00661 228 NENVEIRRITT--DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALE 298 (321)
T ss_pred CCCEEEEECCh--HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcC
Confidence 46788888754 5778888889999842 566789999999999999886432 3445677788888875553
No 409
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.42 E-value=0.17 Score=53.97 Aligned_cols=262 Identities=13% Similarity=0.126 Sum_probs=139.9
Q ss_pred EEccCCCH-HHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCCCCeEEe-c-------ccCC-----CCCCCCCccEEEe
Q 004753 359 RDIYGIDE-KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVT-W-------IGYP-----NTTGLPTIDYRIT 424 (732)
Q Consensus 359 ~~~~~~~~-~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~-~-------~g~p-----~t~g~~~~Dy~~~ 424 (732)
+..-.+|. ..+-+-++.-++|++|-..+--..|.+.-...|-+|+-+. . -||- .-.-+..+|.+++
T Consensus 104 h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~a 183 (419)
T COG1519 104 HQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILA 183 (419)
T ss_pred EEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeee
Confidence 33344554 3566678899999999776655555555555666776542 1 0010 0111234666665
Q ss_pred cCCCCCcCcccCC---ccceEEcCCCccccCCCCCCCCC----CCCCCCCCCCcEEEecCCCCcCCHH-HHHHHHHHHhH
Q 004753 425 DSLADPPETKQKH---VEELIRLPECFLCYTPSPEAGPV----CPTPALTNGFITFGSFNNLAKITPK-VLQVWARILCA 496 (732)
Q Consensus 425 d~~~~p~~~~~~~---~E~l~~lp~~~~~~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~~K~~~~-~~~~~~~il~~ 496 (732)
-.- .+.+++- .-++.-.-+.-+...|.+..... +...+.+...++++| + ....++ .++++.+++++
T Consensus 184 Qse---~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaS--T-H~GEeei~l~~~~~l~~~ 257 (419)
T COG1519 184 QSE---EDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAAS--T-HEGEEEIILDAHQALKKQ 257 (419)
T ss_pred cCH---HHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCCCceEEEec--C-CCchHHHHHHHHHHHHhh
Confidence 321 1111110 01122222222222232221100 011111123344444 3 444444 88999999999
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCC------------CcEEEcCCcCCcHHHHHhcccccEEec--CCCCCC
Q 004753 497 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES------------LRVDLLPLILLNHDHMQAYSLMDISLD--TFPYAG 562 (732)
Q Consensus 497 ~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~------------~rv~~~~~~~~~~~~~~~~~~~Di~Ld--~~~~~g 562 (732)
.||..|+++-.. ++--..+.+.+.++|+.. ..|.+... -.+...+|..+||+.= |+--.|
T Consensus 258 ~~~~llIlVPRH---pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt---mGEL~l~y~~adiAFVGGSlv~~G 331 (419)
T COG1519 258 FPNLLLILVPRH---PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT---MGELGLLYGIADIAFVGGSLVPIG 331 (419)
T ss_pred CCCceEEEecCC---hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec---HhHHHHHHhhccEEEECCcccCCC
Confidence 999999997322 123345666777776642 14544444 3578889999999842 222266
Q ss_pred cccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhh
Q 004753 563 TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS-DVTALANLRMSLRDLMS 635 (732)
Q Consensus 563 ~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~-d~~~~~~~r~~lr~~~~ 635 (732)
|--.+|++++|+|||+=+--..-+-.. ..|...|- .++++| ++.++.++.+.. |++.+.++.+...+-+.
T Consensus 332 GHN~LEpa~~~~pvi~Gp~~~Nf~ei~-~~l~~~ga-~~~v~~-~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 332 GHNPLEPAAFGTPVIFGPYTFNFSDIA-ERLLQAGA-GLQVED-ADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred CCChhhHHHcCCCEEeCCccccHHHHH-HHHHhcCC-eEEECC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 667899999999999822221111122 22222222 245666 667777776665 68887777776665443
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.34 E-value=0.014 Score=58.46 Aligned_cols=66 Identities=27% Similarity=0.359 Sum_probs=61.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHH
Q 004753 189 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 254 (732)
Q Consensus 189 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~ 254 (732)
..+.|+.++|...|+.++++.|++++++..+|......++.-+|-++|-+++.++|.+.++..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 567899999999999999999999999999999999999999999999999999999999887764
No 411
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=96.28 E-value=0.12 Score=60.58 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=108.9
Q ss_pred CCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHc----CCcEEEEecCCCCCHHH----HHHHHHHHHHcCCCCCcEEEc
Q 004753 466 LTNGFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDSV----RHRFLSTLEQLGLESLRVDLL 535 (732)
Q Consensus 466 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~l~~~~~~~~~~----~~~~~~~~~~~Gv~~~rv~~~ 535 (732)
+..+.+++|...|+ +|...-++...-++.+-. ....+++.|++...+.. .+.+.+....-.+ ++||+|+
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvfl 552 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVFL 552 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEEE
Confidence 44577889988888 898887777765554311 24788888876433333 3334333333344 5699998
Q ss_pred CCcCCcHHHHH--hcccccEEecCCC--C-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCC-----
Q 004753 536 PLILLNHDHMQ--AYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN----- 605 (732)
Q Consensus 536 ~~~~~~~~~~~--~~~~~Di~Ld~~~--~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~----- 605 (732)
+- ...-++ ++..|||+|.|+- + ..||+-+=|+.-|++-++....-+..-.. |-++|.-.+
T Consensus 553 e~---Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~-------g~nGwaig~~~~~~ 622 (778)
T cd04299 553 ED---YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYD-------GENGWAIGDGDEYE 622 (778)
T ss_pred cC---CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccC-------CCCceEeCCCcccc
Confidence 76 333343 5688999999996 7 77999999999999999876543333222 444444322
Q ss_pred ---------HH---HHHHHHHH-hhcC------H-HHHHHHHHHHHHHhhcCCCCChHHHHHHHH-HHHHHHH
Q 004753 606 ---------ED---EYVQLALQ-LASD------V-TALANLRMSLRDLMSKSPVCDGQNFALGLE-STYRNMW 657 (732)
Q Consensus 606 ---------~~---~y~~~a~~-l~~d------~-~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e-~~~~~~~ 657 (732)
.+ +-++..|. +--+ | .+.+-+|+.++.. .|.|++.++++.+. ..|.-+-
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~---~p~fs~~Rmv~eY~~~~Y~p~~ 692 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATL---GPRFSAERMVREYVERFYLPAA 692 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhHHHHH
Confidence 11 11222222 2212 2 3555555555533 68899999998864 4554443
No 412
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.20 E-value=2.8 Score=46.66 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=138.3
Q ss_pred cCCHHHHHHHHHHHHHh-----CC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhh
Q 004753 15 LMQYDTALGCYEKAALE-----RP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 86 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~-----~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 86 (732)
.....+.+..|+..++. .| .+...|..........|+++...-.|++++--...+.+.|...+.-+..
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~---- 343 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES---- 343 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH----
Confidence 33444445555555442 22 2344566666777788899999999998887665555555555443333
Q ss_pred HhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 87 VKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 165 (732)
Q Consensus 87 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 165 (732)
.|+.+-|...+..+.+.. |..+.+...-+.+....|++..|...+++..+..|+...+-.........+|+.+.+.
T Consensus 344 ---~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 344 ---SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred ---cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 467777877777777764 5566677777778888889999999999988877888777777777888888888877
Q ss_pred H---HHHHHHhhCCC---CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004753 166 E---CYQMALSIKPN---FSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 227 (732)
Q Consensus 166 ~---~~~~al~~~p~---~~~~~~~la~~-~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g 227 (732)
. ++.....-..+ ....+...+.. +.-.++.+.|...+.+++...|.+...+..+..+....+
T Consensus 421 ~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 421 YKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3 33322221111 12244444444 334678888888999998888888887777777666555
No 413
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.19 E-value=0.019 Score=62.43 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=73.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 120 AYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 198 (732)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 198 (732)
.....|+...|++++..|+...|.. .....+|+.++...|-...|-..+.+++.++...+-.++.+|..+..+.+.++|
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3345677777777777777776653 234567777777777777777777777777766667777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 199 AEMIEKAIAANPTYAEAYNNLGVLYR 224 (732)
Q Consensus 199 ~~~l~~al~~~p~~~~~~~~La~~~~ 224 (732)
++.+++|+++.|+++.+-..|-.+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 77777777777777766665555444
No 414
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.13 E-value=0.067 Score=56.11 Aligned_cols=202 Identities=13% Similarity=0.028 Sum_probs=117.3
Q ss_pred HHhCCCcEEEeCCCCCCCCchhhhccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCcccCCccceEEcCCCccccC
Q 004753 373 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYT 452 (732)
Q Consensus 373 i~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~~E~l~~lp~~~~~~~ 452 (732)
+....+|++|-..+.|...-+.+-.....+..+..++.|..- ...+|.+|+-..-.+ .-..+++..++.....+
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~HD~~-----~~~~Nvl~t~ga~~~i~ 126 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEHDRL-----PRGPNVLPTLGAPNRIT 126 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcccCc-----CCCCceEecccCCCcCC
Confidence 445779999877666643222222222345566777788655 788999987432111 12355666665433333
Q ss_pred CCCCCCCC----CCCCCC--CCCCcEEEecCCCCcCCHH----HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 004753 453 PSPEAGPV----CPTPAL--TNGFITFGSFNNLAKITPK----VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 522 (732)
Q Consensus 453 ~~~~~~~~----~~~~~~--~~~~~~f~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~ 522 (732)
|....... .....+ +...|.+|--++.++++++ +++...++.+..+ ..++|.......+...+.|++.+
T Consensus 127 ~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~ 205 (311)
T PF06258_consen 127 PERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELL 205 (311)
T ss_pred HHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhh
Confidence 32111100 001112 3445677777788999998 4455556666666 66777655544455666666655
Q ss_pred HHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccc
Q 004753 523 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 588 (732)
Q Consensus 523 ~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 588 (732)
+. ...+.+....+. .-+.+.+..+|.++-|--. -+=+.||.+.|+||.++.-+.-.+|+
T Consensus 206 ~~----~~~~~~~~~~~~-nPy~~~La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 206 KD----NPGVYIWDGTGE-NPYLGFLAAADAIVVTEDS--VSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred cC----CCceEEecCCCC-CcHHHHHHhCCEEEEcCcc--HHHHHHHHHcCCCEEEecCCCcchHH
Confidence 42 356633344443 3478888889999854322 12368999999999987755433344
No 415
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.12 E-value=1 Score=48.00 Aligned_cols=213 Identities=11% Similarity=0.030 Sum_probs=125.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHH
Q 004753 24 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 103 (732)
Q Consensus 24 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a 103 (732)
.+++++..-+-.++.|+.-...+...++-++|+...++++...|.. .. .++.+|...++-+.-..+|+++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL---~~-------~lse~yel~nd~e~v~~~fdk~ 359 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL---TM-------FLSEYYELVNDEEAVYGCFDKC 359 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch---he-------eHHHHHhhcccHHHHhhhHHHH
Confidence 3556666666666777776666677777777777777776666651 11 1222222223333333333332
Q ss_pred HHh------------------CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004753 104 LYY------------------NW------------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 153 (732)
Q Consensus 104 l~~------------------~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (732)
.+. ++ ...-++..+-..-.+..-.+.|.+.|-++-+..-....+|..-|.
T Consensus 360 ~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~ 439 (660)
T COG5107 360 TQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF 439 (660)
T ss_pred HHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence 211 01 112233333334444455677777777776654222333333332
Q ss_pred -HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 004753 154 -IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSIS 230 (732)
Q Consensus 154 -~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~La~~~~~~g~~~ 230 (732)
-+...|++.-|...|+-.+...|+.+......-..+...++-+.|...|++++..-.+. ..+|..+-.....-|+..
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 24567888888888888888888888777777777788888888888888877653222 445555555556667777
Q ss_pred HHHHHHHHHHhhCCCC
Q 004753 231 LAIDAYEQCLKIDPDS 246 (732)
Q Consensus 231 eA~~~~~~al~l~p~~ 246 (732)
.++..-++..++.|+.
T Consensus 520 ~v~sLe~rf~e~~pQe 535 (660)
T COG5107 520 NVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhHHHHHHHHcCcH
Confidence 6666666666666653
No 416
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.08 E-value=0.01 Score=38.97 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPM 34 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 34 (732)
++++.+|.++...|++++|++.|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 35666666666666666666666666666664
No 417
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=96.05 E-value=0.13 Score=55.66 Aligned_cols=133 Identities=9% Similarity=0.091 Sum_probs=76.7
Q ss_pred CcEEEecCCCC--cCC-HHHHHHHHHHHhHcCCcEEEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 470 FITFGSFNNLA--KIT-PKVLQVWARILCAVPNSRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 470 ~~~f~~~~~~~--K~~-~~~~~~~~~il~~~p~~~l~l~-~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
.+++..+.+.. |.. ++.+....+.|.......+++. ..+-.....++.+.+... + .++|.+.+.++ ..+++
T Consensus 202 ~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~--~--~~~v~l~~~l~-~~~~l 276 (365)
T TIGR03568 202 PYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVN--E--HPNFRLFKSLG-QERYL 276 (365)
T ss_pred CEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhc--C--CCCEEEECCCC-hHHHH
Confidence 55556666543 443 2333333333433321223332 111112234555544321 1 36799999887 78999
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcc-ccCCHHHHHHHHHHhhcCH
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDEYVQLALQLASDV 620 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~-ia~~~~~y~~~a~~l~~d~ 620 (732)
.++..||+++ .+++..+-||..+|+|||++.+ ...+|-. |-.-+ |-.+.++-++.+.+ +.++
T Consensus 277 ~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~~-------g~nvl~vg~~~~~I~~a~~~-~~~~ 339 (365)
T TIGR03568 277 SLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRLR-------ADSVIDVDPDKEEIVKAIEK-LLDP 339 (365)
T ss_pred HHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhhh-------cCeEEEeCCCHHHHHHHHHH-HhCh
Confidence 9999999998 4443445899999999998763 2233221 43434 55678887776666 4554
No 418
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.92 E-value=0.0068 Score=41.09 Aligned_cols=25 Identities=52% Similarity=0.829 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 216 YNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 216 ~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
+.+||.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455556666666666666666544
No 419
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=95.91 E-value=0.068 Score=60.54 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=88.7
Q ss_pred CcEEEecCCCC---cCCHHHHHHHHHHHhHcCCcE-EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 470 FITFGSFNNLA---KITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 470 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
.++|.||+... .+.++.....+..+...|+.. +|...... ... +.+.+... .+..|++.+|.| +.+.+
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~-~~~----~~~~~~~~--~~~nV~~~~W~P-Q~~ll 349 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDD-SIY----FPEGLPNR--GRGNVVLSKWAP-QNDLL 349 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCc-chh----hhhcCCCC--CcCceEEecCCC-cHHHh
Confidence 67888899886 899999999999999987776 55543321 100 11111111 234588889998 66666
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecC--CCcccccchhHHhhhcCCCccc-c--CCHHHHHHHHHHhhcCH
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLI-A--KNEDEYVQLALQLASDV 620 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~s~l~~~gl~~~i-a--~~~~~y~~~a~~l~~d~ 620 (732)
.....+..|+ -.+|-++|+|++++|||+|+++ |+.+.. +-++...|.-... . -+.++.......+..++
T Consensus 350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~ 423 (496)
T KOG1192|consen 350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEILENE 423 (496)
T ss_pred cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcCh
Confidence 3344455565 1366679999999999999654 664432 2233333332221 1 12222445555666677
Q ss_pred HHHHHHHHHHH
Q 004753 621 TALANLRMSLR 631 (732)
Q Consensus 621 ~~~~~~r~~lr 631 (732)
+.....++-..
T Consensus 424 ~y~~~~~~l~~ 434 (496)
T KOG1192|consen 424 EYKEAAKRLSE 434 (496)
T ss_pred HHHHHHHHHHH
Confidence 66665555444
No 420
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.90 E-value=2.1 Score=47.68 Aligned_cols=170 Identities=12% Similarity=0.007 Sum_probs=134.1
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 87 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRDNLDKAV 165 (732)
Q Consensus 87 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~ 165 (732)
....|+++.....|++++--.....+.|...+......|+.+-|...+.++.++ .+..+..+..-+.+-...|++..|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 345789999999999999888888999999999999999999999999998887 4667788888888888999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC---HHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 004753 166 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVLY-RDAGSISLAIDAYEQ 238 (732)
Q Consensus 166 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~---~l~~al~~~p~~---~~~~~~La~~~-~~~g~~~eA~~~~~~ 238 (732)
.++++..+..|+...+-...+....++|+.+.+-. ++.....-..+. ...+...+... .-.++.+.|...+.+
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~ 466 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLE 466 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999889988888888888889999998884 333222211111 23344444443 346789999999999
Q ss_pred HHhhCCCChhHHHHHHHH
Q 004753 239 CLKIDPDSRNAGQNRLLA 256 (732)
Q Consensus 239 al~l~p~~~~a~~~~~la 256 (732)
+++..|++...+..+.-.
T Consensus 467 ~~~~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 467 ANDILPDCKVLYLELIRF 484 (577)
T ss_pred hhhcCCccHHHHHHHHHH
Confidence 999999987766554433
No 421
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.87 E-value=1.3 Score=51.42 Aligned_cols=236 Identities=17% Similarity=0.074 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC-------------------CHHHHHHHHHHHHHCCCHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALER-------PM-------------------YAEAYCNMGVIYKNRGDLESAIA 57 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~-------------------~~~a~~~lg~~~~~~g~~~~A~~ 57 (732)
+|+.-|......+..++|.++++++++.- +. .....+.++.+..-.+++.+|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 35556777778888888988888887631 11 01245566777788999999999
Q ss_pred HHHHHHhhCCCCHH--HHHHHHHHHHHhhhhHhhcCCHHHHHHHHH--------HHHHhCCCCH---HHHHHHHHHHHHc
Q 004753 58 CYERCLAVSPNFEI--AKNNMAIALTDLGTKVKLEGDINQGVAYYK--------KALYYNWHYA---DAMYNLGVAYGEM 124 (732)
Q Consensus 58 ~~~~al~~~p~~~~--~~~~la~~~~~lg~~~~~~g~~~~A~~~~~--------~al~~~p~~~---~~~~~la~~~~~~ 124 (732)
..+.+.+.....+. ........++-.|..+...|+.+.|+..|. .+....+.+. -+..++..++...
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhh
Confidence 99988766433221 122234556667777888899999999998 2222233221 2345566666655
Q ss_pred CCHHH----HHHHHHHHHhcCCCCHHHHHHHHHH-----HH--HcCCHHHHHHHHHHHHhhC-CC--C----HHHHHHHH
Q 004753 125 LKFDM----AIVFYELAFHFNPHCAEACNNLGVI-----YK--DRDNLDKAVECYQMALSIK-PN--F----SQSLNNLG 186 (732)
Q Consensus 125 g~~~~----A~~~~~~al~~~p~~~~~~~~la~~-----~~--~~g~~~~A~~~~~~al~~~-p~--~----~~~~~~la 186 (732)
+.-.. +.+.+++.-....+....++..+.. +. ..-...++...+.++++.. .. + .-++..++
T Consensus 463 ~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~ 542 (608)
T PF10345_consen 463 SSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMG 542 (608)
T ss_pred cccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 54333 3333333222211122222222211 11 1223346677776666654 11 1 22445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---HH-HH-----HHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 187 VVYTVQGKMDAAAEMIEKAIAANPTY---AE-AY-----NNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 187 ~~~~~~g~~~eA~~~l~~al~~~p~~---~~-~~-----~~La~~~~~~g~~~eA~~~~~~al 240 (732)
..++ .|+..+..+...++....... .. .| -.+...+...|+.++|....++.-
T Consensus 543 ~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 543 HRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 5555 677777666666665543322 22 22 134555677788887777766654
No 422
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.87 E-value=0.32 Score=48.31 Aligned_cols=207 Identities=15% Similarity=0.120 Sum_probs=129.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhhh
Q 004753 15 LMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP-----NFEIAKNNMAIALTDLGT 85 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~lg~ 85 (732)
..+.++|+..|++.+++.+.. ..++-.+..+++.+++|++-...|.+.+..-. ++.+-..+-..-|..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS--- 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS--- 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh---
Confidence 347899999999999998764 35778888999999999999999998876421 221111111111111
Q ss_pred hHhhcCCHHHHHHHHHHHHHh--CCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHH
Q 004753 86 KVKLEGDINQGVAYYKKALYY--NWHYADA----MYNLGVAYGEMLKFDMAIVFYELAFHFNPH------------CAEA 147 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~ 147 (732)
...+.+--.++|+..+.. +..+... ...+|.+|+..++|.+-.+.+++.-..... ..++
T Consensus 117 ---tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 117 ---TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred ---hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 122333334444443322 1122222 346889999999888877777766543211 1345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH--
Q 004753 148 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ--SLN----NLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAE-- 214 (732)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~----~la~~~~~~g~~~eA~~~l~~al~~~p-----~~~~-- 214 (732)
|..-..+|..+++-.+-...|++++.+...-|. +.. .=|..+.+.|++++|-.-|-+|++... ....
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCL 273 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 273 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHH
Confidence 555567788888888888899999887544332 221 124556788999999888888887642 2222
Q ss_pred HHHHHHHHHHHcC
Q 004753 215 AYNNLGVLYRDAG 227 (732)
Q Consensus 215 ~~~~La~~~~~~g 227 (732)
-|..||..+.+.|
T Consensus 274 KYLVLANMLmkS~ 286 (440)
T KOG1464|consen 274 KYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHcC
Confidence 2455666666655
No 423
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.78 E-value=0.034 Score=59.04 Aligned_cols=143 Identities=12% Similarity=0.011 Sum_probs=118.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 122 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 201 (732)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 201 (732)
...|+.-.|-+-...++...|..+......+.+...+|+|+.|...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45688888888888899999999999999999999999999999988777665544455566666777889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCC
Q 004753 202 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 264 (732)
Q Consensus 202 l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~ 264 (732)
.+-.+...-.++++...-+..-..+|-+++|..++++.+.++|.....+.+.+-...|+..|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 988888777777877777777788899999999999999999988777778777777877765
No 424
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.77 E-value=0.017 Score=37.90 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 215 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666654
No 425
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.66 E-value=0.53 Score=52.59 Aligned_cols=212 Identities=17% Similarity=0.102 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 74 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 74 (732)
..|..+|.....+-.++-|...|-+.-...-- ...--...+.+-..-|++++|.+.|..+=+.+-
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL------- 765 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL------- 765 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-------
Confidence 46777787777777777777777665321100 000112334444456778888877755422110
Q ss_pred HHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------
Q 004753 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFDMAIVFYELAF-------------- 138 (732)
Q Consensus 75 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------- 138 (732)
+. ..+...|++-.-.++++..-.-. .....++.++|..+..+..+++|.++|.+.-
T Consensus 766 --Ai------elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 766 --AI------ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL 837 (1189)
T ss_pred --hH------HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence 00 01111223333333332211110 1112344555555555555555555554331
Q ss_pred --------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 139 --------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 139 --------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 210 (732)
..-|++...+-.+|..+...|.-++|.+.|-+.- .|. + --..+..++++.+|.+..++- .-|
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a---Av~tCv~LnQW~~avelaq~~--~l~ 907 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A---AVHTCVELNQWGEAVELAQRF--QLP 907 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H---HHHHHHHHHHHHHHHHHHHhc--cch
Confidence 1234445555556666666666666666554321 111 0 112234445555555544332 011
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 211 TYAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 211 ~~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
.-.......+.-+...++..+|++.++++
T Consensus 908 qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 908 QVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 21222222333345556677777776665
No 426
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.65 E-value=0.12 Score=43.35 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 198 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 198 A~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++.+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 355677788888888888888888888888888888888888888877633
No 427
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.52 E-value=0.1 Score=54.89 Aligned_cols=140 Identities=18% Similarity=0.229 Sum_probs=81.4
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCC
Q 004753 480 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 559 (732)
Q Consensus 480 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 559 (732)
.+.-|-++++..++..+.|+.++++--.+ ..-+++...........-.+++.+. +-...+..||+.|
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~aD~al---- 269 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVN----AKYRRIIEEALKWEVAGLSLILIDG-----EKRKAFAAADAAL---- 269 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCc----HHHHHHHHHHhhccccCceEEecCc-----hHHHHHHHhhHHH----
Confidence 56678888888888889999999996443 3323444433333221112333222 3344566699998
Q ss_pred CCCcccHHHhhhcCCCeeecC-CCcccccchhHH--hhhcCCCccccC------------CHHHHHHHHHHhhcCHHHHH
Q 004753 560 YAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSL--LTKVGLKHLIAK------------NEDEYVQLALQLASDVTALA 624 (732)
Q Consensus 560 ~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~s~--l~~~gl~~~ia~------------~~~~y~~~a~~l~~d~~~~~ 624 (732)
-..||.++|++.+|+|.|... -..+.-.++--+ +..++||.+++. +++...+....|..|...+.
T Consensus 270 ~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~ 349 (381)
T COG0763 270 AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRRE 349 (381)
T ss_pred HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHH
Confidence 567999999999999976532 221111111111 113456655543 45566666666777775555
Q ss_pred HHHHHHHH
Q 004753 625 NLRMSLRD 632 (732)
Q Consensus 625 ~~r~~lr~ 632 (732)
++.+..++
T Consensus 350 ~~~~~~~~ 357 (381)
T COG0763 350 ALKEKFRE 357 (381)
T ss_pred HHHHHHHH
Confidence 55555443
No 428
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.49 E-value=0.72 Score=45.87 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=118.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHH
Q 004753 49 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-----WHYAD-AMYNLGVAYG 122 (732)
Q Consensus 49 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~~~~la~~~~ 122 (732)
..+.++|+..|++++++.+...+.-+ .++-++-.+++..+++++-++.|++.+..- .+..+ ....+-..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGF---KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGF---KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 45899999999999999987654322 345566677777889999888888877531 12222 1222222222
Q ss_pred HcCCHHHHHHHHHHHHhc--CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------CCHHHHHH
Q 004753 123 EMLKFDMAIVFYELAFHF--NPHCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKP------------NFSQSLNN 184 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~--~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~ 184 (732)
...+.+--.+.|+..+.. +..+. .....+|.+|+..++|.+-.+.+++.-+-.. ...+.|..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 233334444444443332 11222 2334688999988888877777666543321 11234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HH----HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 185 LGVVYTVQGKMDAAAEMIEKAIAANPTYA--EA----YNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 185 la~~~~~~g~~~eA~~~l~~al~~~p~~~--~~----~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
-...|..+++-.+-...|++++.+...-+ .+ .-.=|..+.+.|++++|..-|-.|.+-..
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 55677788888888888999988754332 22 22235667888999999888888876543
No 429
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.49 E-value=3.7 Score=44.13 Aligned_cols=188 Identities=12% Similarity=0.046 Sum_probs=110.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------HHHHHH-HCCCHHHH---HHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 11 VYSELMQYDTALGCYEKAALERPMYAEAYCN------MGVIYK-NRGDLESA---IACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 11 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~------lg~~~~-~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
...++++..+|.+++.-....+|+.....-. +-.+.. .-..+.+- +..++.+-..+- ....+..-+
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di----DrqQLvh~L 382 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI----DRQQLVHYL 382 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc----cHHHHHHHH
Confidence 3456677777777777777777765421111 011111 01111111 222222211121 223444455
Q ss_pred HHhhhhHhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhc---------CC---CCH
Q 004753 81 TDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAFHF---------NP---HCA 145 (732)
Q Consensus 81 ~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~~~ 145 (732)
...+.-+...|. -++|+..++.+++..+.+.......-. +-...|.+|+. .+.+.+++ .| .+.
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 566666667777 788999999999988887654322111 11112222221 12222221 12 223
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 146 EACNNL--GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 205 (732)
Q Consensus 146 ~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 205 (732)
+.-+.+ |..++.+|+|.++.-+-.-..++.| .+.++..+|.++...++|++|..++.+.
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 444444 4567789999999999999999999 8999999999999999999999999774
No 430
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.47 E-value=0.05 Score=54.72 Aligned_cols=66 Identities=24% Similarity=0.370 Sum_probs=40.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 122 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 122 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
...|+.++|..+|+.|+++.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 345666666666666666666666666666666666666666666666666666666665555443
No 431
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.54 Score=51.86 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 125 LKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 202 (732)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 202 (732)
+.-..++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|++..+..+|+.+....|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444677777777788888776544 4667777889989999999999999999999999999988887777666655
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 004753 203 EK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 256 (732)
Q Consensus 203 ~~-al~~~p~~~~~~~~L------a~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la 256 (732)
.. +....|++......+ +.....+|+..++....+++..+.|.++......+.+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 888888887765555 8888899999999999999999999997766554444
No 432
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.39 E-value=0.2 Score=51.88 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCC
Q 004753 483 TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG 562 (732)
Q Consensus 483 ~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g 562 (732)
..+.+...++.|..- +.++++.|.+ ..++...+..+..| ...-+.+.+... -.+..+.+..+|+++.+-
T Consensus 138 ~~~~~~~l~~~l~~~-~~~ivl~g~~----~e~~~~~~i~~~~~-~~~~~~~~~~~~-l~e~~~li~~~~l~I~~D---- 206 (279)
T cd03789 138 PAERFAALADRLLAR-GARVVLTGGP----AERELAEEIAAALG-GPRVVNLAGKTS-LRELAALLARADLVVTND---- 206 (279)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEech----hhHHHHHHHHHhcC-CCccccCcCCCC-HHHHHHHHHhCCEEEeeC----
Confidence 345555555555544 7788888765 22333333333333 123345666654 578999999999997332
Q ss_pred cccHHHhhhcCCCeeecCCCcccccch
Q 004753 563 TTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 563 ~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
+-++-=|.++|+|+|++-|.+...+.+
T Consensus 207 sg~~HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 207 SGPMHLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred CHHHHHHHHcCCCEEEEECCCCccccC
Confidence 223333458899999999988777764
No 433
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.37 E-value=0.65 Score=51.91 Aligned_cols=185 Identities=11% Similarity=0.083 Sum_probs=115.4
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---HHhhhhHhhcCCHHHHHHHHHHHHHhC
Q 004753 31 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---TDLGTKVKLEGDINQGVAYYKKALYYN 107 (732)
Q Consensus 31 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~ 107 (732)
.+| ++..|..+|......-.++.|...|-++-... .-. .-..+..++ .+.+.+-..-|++++|.+.|-.+-..+
T Consensus 688 dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik-~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIK-LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chh-HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 344 48899999999888888888887777653321 110 001111111 122333344579999999886553221
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 185 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 185 (732)
....++.+.|+|-...++++..-.-. .....++.++|..+..+..+++|.++|.+.-. ..++
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~ 828 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQ 828 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhH
Confidence 12245667788877777776543222 22356899999999999999999999987532 3345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 186 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 238 (732)
Q Consensus 186 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~ 238 (732)
..+++...++++-..+ ...-|++.+.+-.+|..+...|.-++|.+.|-+
T Consensus 829 ~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 6666666666654333 333466666666777777777777777666544
No 434
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=1.9 Score=50.49 Aligned_cols=193 Identities=19% Similarity=0.205 Sum_probs=122.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhH
Q 004753 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 87 (732)
Q Consensus 8 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 87 (732)
+|.+....+-|++|..+|++- ..+..+.. ...-..++.+.|.++.+++ +.+..|. +++...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWs-------qlakAQ 1114 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWS-------QLAKAQ 1114 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHH-------HHHHHH
Confidence 456667777788888887763 22333332 2234567788888887776 2233444 455555
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 88 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 167 (732)
Q Consensus 88 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (732)
...+...+|++.|-++ +++..|.....+..+.|+|++-++++..+-+.... +.+-..+..+|.+.++..+-.+.
T Consensus 1115 L~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHH
Confidence 5678999999999775 57788899999999999999999999888765322 22333444555566665554433
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 168 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 168 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
+ ..|+.+. ....|.-++..|.|+.|.-+|... .-|..|+..+..+|+|+.|...-++|
T Consensus 1189 i-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1189 I-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred h-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2 2333332 334566666666676666555432 23555666666667777776666665
No 435
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.29 E-value=0.033 Score=37.72 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKA 28 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~a 28 (732)
|.++|.+|...|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 436
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=95.26 E-value=1.3 Score=46.99 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=41.3
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC-CCcccccchhHHhhhcCCCccccCCHHHHHH
Q 004753 543 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQ 611 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~ 611 (732)
+.+.++.-+|+++ .+|||.+.||-.+|+|+|.+. |.... -.-.|...|+ =+-..|.++-+.
T Consensus 241 d~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~---vd~~L~~~Gl-l~~~~~~~ei~~ 302 (335)
T PF04007_consen 241 DGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA---VDKYLIEKGL-LYHSTDPDEIVE 302 (335)
T ss_pred CHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh---HHHHHHHCCC-eEecCCHHHHHH
Confidence 4456666699998 789999999999999999843 33110 1144666676 233567777666
No 437
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.22 E-value=0.084 Score=39.16 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 40 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 40 (732)
.+|.+|..++..|+|++|.++.+.+++.+|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455555555555555555555555555555544433
No 438
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.20 E-value=0.18 Score=43.39 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 96 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
++++|.++..+.|..+..++.+|.-+.....|+++....++++..
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 556666666666666666666666555555566666666665543
No 439
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.14 E-value=0.2 Score=49.48 Aligned_cols=93 Identities=19% Similarity=0.143 Sum_probs=49.1
Q ss_pred HCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHH-------HhCCC------CHHHH
Q 004753 48 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL-------YYNWH------YADAM 114 (732)
Q Consensus 48 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~------~~~~~ 114 (732)
....+++|++.|.-|+-...-.......+|.++..++.+|...|+.+....++++|+ +.... ...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345678888888777654221111223556677777777777777544444443333 22211 12344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 115 YNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
+.+|.+..+.|++++|.++|.+.+..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45555555555555555555555543
No 440
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=95.13 E-value=0.025 Score=62.82 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=66.2
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcC---CCc--cc-------cCCHHHH
Q 004753 543 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG---LKH--LI-------AKNEDEY 609 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~g---l~~--~i-------a~~~~~y 609 (732)
+|-.....||+.+-|+-| .=|-|-+|+.+||||.||..=..| |.-+...++ ..+ .| -++.+++
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGF----G~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~l 537 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGF----GCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQL 537 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHH----HHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhH----HHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHH
Confidence 444455559999999999 779999999999999999442211 111111111 011 11 1234555
Q ss_pred HHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 004753 610 VQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 660 (732)
Q Consensus 610 ~~~a~~l~~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 660 (732)
.+....+++ +...+..+|.+.+.. |.++|++.|...++.+|.-+.++-
T Consensus 538 a~~l~~f~~~~~rqri~~Rn~ae~L---S~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 538 ADFLYKFCQLSRRQRIIQRNRAERL---SDLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHH---GGGGBHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 555555655 555555556554432 678999999999999999998776
No 441
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.98 E-value=0.068 Score=39.66 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 214 ~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
+.++.+|..+.++|+|++|..+.+.+++++|++..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35667777778888888888888888888887776643
No 442
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.90 E-value=0.23 Score=59.59 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=123.8
Q ss_pred HHHhhhhHhhcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC
Q 004753 80 LTDLGTKVKLEGDINQGVA------YYKKA-LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC 144 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~ 144 (732)
....|......+.+.+|.+ ++... -.+.|.....+..++.++...+++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3445555556677777766 45422 2346777889999999999999999999998887654 3455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----- 211 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----- 211 (732)
...+.+++...+..++...|...+.++..+ .|.-.....+++.++...++++.|+++++.|++.+..
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 778888998888889999999999988775 3555667788999999999999999999999986432
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 212 ---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 212 ---~~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
....+..++.++..++++..|....+....+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2455667777777778777777776665544
No 443
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.89 E-value=0.45 Score=44.08 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 225 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~ 225 (732)
..+..+..+-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++......|..+.+.-.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555566666777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 004753 226 AGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 226 ~g~~~eA~~~~~~al~l~p 244 (732)
+|+..= ..+-+++++..+
T Consensus 91 ~~D~~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 91 LGDPSW-RRYADEVLESGA 108 (160)
T ss_pred cCChHH-HHHHHHHHhcCC
Confidence 887542 223334555444
No 444
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.87 E-value=1.1 Score=38.94 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=33.7
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 88 KLEGDINQGVAYYKKALYYNWHY------------ADAMYNLGVAYGEMLKFDMAIVFYELAFH 139 (732)
Q Consensus 88 ~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 139 (732)
...|-|++|...++++++....- .-.+..|+..+..+|+|++++...++++.
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34678888888888888764321 23466677777788888777766666553
No 445
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.85 E-value=0.049 Score=55.37 Aligned_cols=198 Identities=15% Similarity=0.213 Sum_probs=88.8
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCchhhhcc-CCCCeEEecccCCCCCCCCCccEEEecCCCCCcCcccCCccc------
Q 004753 368 KVAAMVREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEE------ 440 (732)
Q Consensus 368 ~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~-r~Apvq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~~E~------ 440 (732)
.+.+.||+.+.|++||+.+.. +..+++. -.||.-+.+-+... .+.-..+..+. .+. ..+..++
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~----~~~--~~~~v~~~~~ll~ 72 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVD----RPP--NKHMVDRYLSLLS 72 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-----TTS--SSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhccccccc----ccc--cchHHHHHHHHHH
Confidence 578899999999999997743 4444433 44687777655433 11111122222 111 1122221
Q ss_pred -eEEcCCCccccCCCCCCC-----CCCCCC-CCCCCCcEEEecCCC-CcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 004753 441 -LIRLPECFLCYTPSPEAG-----PVCPTP-ALTNGFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCC 511 (732)
Q Consensus 441 -l~~lp~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~f~~~~~~-~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 511 (732)
+.-++.. ...|.-..+ ...... ......|+|...++. .|. ..+.+..+++.|.... ..++|.|++
T Consensus 73 ~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~--- 146 (247)
T PF01075_consen 73 ELLGIPYP--STKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGP--- 146 (247)
T ss_dssp HHHTS-SS--SSSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SS---
T ss_pred HhcCCCCC--CCCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccc---
Confidence 1111210 011100000 000011 122334444443333 333 3344444444444333 567777765
Q ss_pred HHH-HHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHHHhhhcCCCeeecCCCcccccch
Q 004753 512 DSV-RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 512 ~~~-~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
.. .....+.+. .+.....+.+.+... -.+..+++..+|+++ ++-| .+==|-++|+|+|++-|.+...+.+
T Consensus 147 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~e~~ali~~a~~~I-----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 147 -EEQEKEIADQIA-AGLQNPVINLAGKTS-LRELAALISRADLVI-----GNDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp -HHHHHHHHHHHH-TTHTTTTEEETTTS--HHHHHHHHHTSSEEE-----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred -hHHHHHHHHHHH-HhcccceEeecCCCC-HHHHHHHHhcCCEEE-----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 22 222222222 233223577888765 688999999999997 2222 3344667899999999998776665
No 446
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.85 E-value=0.25 Score=41.39 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=37.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 004753 165 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGS 228 (732)
Q Consensus 165 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~La~~~~~~g~ 228 (732)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-++++.++++ ..+...+-.++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 455666666777777777777777777777777777777777666544 3344444444444444
No 447
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.84 E-value=0.83 Score=51.66 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=77.2
Q ss_pred CcCCHHHHHHHH-HHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCC
Q 004753 480 AKITPKVLQVWA-RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 558 (732)
Q Consensus 480 ~K~~~~~~~~~~-~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~ 558 (732)
.++-|.++++.. +.++ ++.++++-.. .+..++.+++..+..++ -.+.+... . +-...++.||++|
T Consensus 428 ~rllPv~l~aa~~~~l~--~~l~fvvp~a---~~~~~~~i~~~~~~~~~--~~~~ii~~---~-~~~~~m~aaD~aL--- 493 (608)
T PRK01021 428 LRNLTIQVQAFLASSLA--STHQLLVSSA---NPKYDHLILEVLQQEGC--LHSHIVPS---Q-FRYELMRECDCAL--- 493 (608)
T ss_pred HHHHHHHHHHHHHHHhc--cCeEEEEecC---chhhHHHHHHHHhhcCC--CCeEEecC---c-chHHHHHhcCeee---
Confidence 344466665554 1221 3455555322 22334555555544332 11233321 1 1235666699998
Q ss_pred CCCCcccHHHhhhcCCCeeecC-CCcccccchhHHhh----hcCC----------Cccc----cCCHHHHHHHHHHhhcC
Q 004753 559 PYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLT----KVGL----------KHLI----AKNEDEYVQLALQLASD 619 (732)
Q Consensus 559 ~~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~s~l~----~~gl----------~~~i----a~~~~~y~~~a~~l~~d 619 (732)
-..||.|+|++.+|+|.|... -..+.-.++--+++ .+|+ ||++ ..+++.-.+. +++..|
T Consensus 494 -aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~-l~lL~d 571 (608)
T PRK01021 494 -AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA-LDILKT 571 (608)
T ss_pred -ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH-HHHhcC
Confidence 567999999999999977643 22111112212222 2333 5777 3456666655 699999
Q ss_pred HHHHHHHHHHHHHHh
Q 004753 620 VTALANLRMSLRDLM 634 (732)
Q Consensus 620 ~~~~~~~r~~lr~~~ 634 (732)
++.++++++.+++..
T Consensus 572 ~~~r~~~~~~l~~lr 586 (608)
T PRK01021 572 SQSKEKQKDACRDLY 586 (608)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888888887643
No 448
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.75 E-value=0.48 Score=43.87 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
.+..+..+-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..|..+.+.-.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34455555566677777777777777777888777777788888888888888888887777777777777777777777
Q ss_pred CCH
Q 004753 193 GKM 195 (732)
Q Consensus 193 g~~ 195 (732)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 664
No 449
>PRK10941 hypothetical protein; Provisional
Probab=94.72 E-value=0.2 Score=51.21 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
.+.++-.+|.+.+++++|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999887754
No 450
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.70 E-value=4.3 Score=43.58 Aligned_cols=176 Identities=9% Similarity=-0.041 Sum_probs=109.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 58 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 137 (732)
Q Consensus 58 ~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (732)
.+++++...+-.++.|+.....+.. .++-++|+...++++...|.-..-+ +.+|...++-++...+|+++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~-------isd~q~al~tv~rg~~~spsL~~~l---se~yel~nd~e~v~~~fdk~ 359 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIG-------ISDKQKALKTVERGIEMSPSLTMFL---SEYYELVNDEEAVYGCFDKC 359 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhh-------ccHHHHHHHHHHhcccCCCchheeH---HHHHhhcccHHHHhhhHHHH
Confidence 4567777777667676665544444 4588999999999999988732211 22333333333333333333
Q ss_pred Hh-------c-----------CCC-CHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 138 FH-------F-----------NPH-CAE-----------ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 138 l~-------~-----------~p~-~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
.+ . ++. ..+ +++.+-..-.+..-.+.|...|-++-+..-.....+..-|.
T Consensus 360 ~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~ 439 (660)
T COG5107 360 TQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF 439 (660)
T ss_pred HHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence 22 1 110 011 22222223334445677777777776554233333333333
Q ss_pred H-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 188 V-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 188 ~-~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
+ +...|++.-|-..|+-.+...|+++......-..+...++-..|...|++++..-
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 3 4568999999999999999999988777777778888999999999999887543
No 451
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.66 E-value=1.1 Score=39.02 Aligned_cols=86 Identities=12% Similarity=0.141 Sum_probs=48.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH---
Q 004753 157 DRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAE--- 214 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~-------~~p~~~~--- 214 (732)
..|-|++|...+++++..... +..++..|+.++..+|+|++++...++++. ++.+...
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 345555555555555544211 122455566666666666666555555543 3444333
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 215 -AYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 215 -~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
+-++.+..+...|+.++|+..|+++-++
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3456778888888888888888887654
No 452
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.65 E-value=0.32 Score=52.50 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=50.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 004753 165 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKID 243 (732)
Q Consensus 165 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~-~~eA~~~~~~al~l~ 243 (732)
...|+.++...+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 3455555555555566665555555555556666666666666666666666655555554443 566666666666666
Q ss_pred CCChhHHH
Q 004753 244 PDSRNAGQ 251 (732)
Q Consensus 244 p~~~~a~~ 251 (732)
|+++..+.
T Consensus 171 pdsp~Lw~ 178 (568)
T KOG2396|consen 171 PDSPKLWK 178 (568)
T ss_pred CCChHHHH
Confidence 66655543
No 453
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.58 E-value=0.061 Score=34.14 Aligned_cols=31 Identities=52% Similarity=0.702 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERP 33 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 33 (732)
.+++.+|.++...+++++|+..|+++++.+|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3455566666666666666666666655554
No 454
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=2.1 Score=40.04 Aligned_cols=48 Identities=6% Similarity=-0.015 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 92 DINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAFH 139 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 139 (732)
..++|+..|...-+..-.. .-+.+..+.+..+.|+...|+..|.++-+
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 4445555554443332221 12344445555555555555555555443
No 455
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.53 E-value=0.28 Score=42.22 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=53.5
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
-+...|++-+|++..+..+...+++.. .+..-|.++..+. .+....+...-+ .-
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y-----------Ll 61 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY-----------LL 61 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH-----------HH
Confidence 344567777777777777777666553 3334444443322 111111111111 12
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 208 (732)
.+++++.++..+.|..+..++.+|.-+.....|+++....++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3456666666666666666666666555555666666666666554
No 456
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.50 E-value=0.66 Score=49.73 Aligned_cols=112 Identities=12% Similarity=0.075 Sum_probs=62.8
Q ss_pred CCcEEEecCCC-CcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCc-EEEcCCcCCcHHHH
Q 004753 469 GFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR-VDLLPLILLNHDHM 545 (732)
Q Consensus 469 ~~~~f~~~~~~-~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~r-v~~~~~~~~~~~~~ 545 (732)
..++++...+. .|. ..+-+...++.|.. .+..++|.|.+.. ..+ .+.+.+.+. ....+ +.+.|... -.+..
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-~~~~ivl~g~p~~--~e~-~~~~~i~~~-~~~~~~~~l~g~~s-L~el~ 255 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHA-RGYEVVLTSGPDK--DEL-AMVNEIAQG-CQTPRVTSLAGKLT-LPQLA 255 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHh-CCCeEEEecCCCH--HHH-HHHHHHHhh-CCCCcccccCCCCC-HHHHH
Confidence 44555554432 332 23333333333333 3567788775521 111 122223222 22333 44777765 57899
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchh
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 590 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 590 (732)
+++..||+++- +-+-.+==|-++|+|+|++-|.+...+++.
T Consensus 256 ali~~a~l~Vs----~DSGp~HlAaA~g~p~v~Lfgpt~p~~~~P 296 (344)
T TIGR02201 256 ALIDHARLFIG----VDSVPMHMAAALGTPLVALFGPSKHIFWRP 296 (344)
T ss_pred HHHHhCCEEEe----cCCHHHHHHHHcCCCEEEEECCCCcccccc
Confidence 99999999972 222234447789999999999877666653
No 457
>PRK10941 hypothetical protein; Provisional
Probab=94.36 E-value=0.49 Score=48.38 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 222 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~ 222 (732)
....++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 35567788889999999999999999999999999999999999999999999999999999999988766544443
No 458
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.32 E-value=0.068 Score=33.91 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 215 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
++..+|.++..+|++++|..+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666554
No 459
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.29 E-value=0.32 Score=58.46 Aligned_cols=169 Identities=16% Similarity=0.102 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh--------C
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--------N 107 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 107 (732)
.-....|......|.+.+|.+ .-+++.... .+...+-..+.+|..++.++...++.++|+..-.++.-+ .
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 344566777777888888888 555555433 122234455778888888888899999999998887644 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-- 177 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 177 (732)
|+....+.+++...+..++...|...+.++.++ .|.......+++.++...++++.|+.+.+.|++.+..
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 345568889999999999999999999988875 5666777889999999999999999999999986422
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 178 ------FSQSLNNLGVVYTVQGKMDAAAEMIEKAI 206 (732)
Q Consensus 178 ------~~~~~~~la~~~~~~g~~~eA~~~l~~al 206 (732)
....+..+++.+...+++..|+...+...
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 23345555665555555555555554443
No 460
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.29 E-value=0.49 Score=45.30 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAV 65 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 65 (732)
.++..+|..|.+.|+.++|++.|.++.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 34455555555555555555555554443
No 461
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.28 E-value=7.7 Score=50.02 Aligned_cols=246 Identities=13% Similarity=0.130 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC--------H--
Q 004753 1 MQPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF--------E-- 70 (732)
Q Consensus 1 ~a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~-- 70 (732)
+++.|...|++....|+++.|...+-+|.+.. .+.++...|..+..+|+-..|+..+++.+..+-.+ +
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 36789999999999999999999999998776 57889999999999999999999999999654322 1
Q ss_pred HHHHHHHHHHHHhhhhHhhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCCHHH---HHHH
Q 004753 71 IAKNNMAIALTDLGTKVKLEGDI--NQGVAYYKKALYYNWHYADAMYNLGVAYGE------------MLKFDM---AIVF 133 (732)
Q Consensus 71 ~~~~~la~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~---A~~~ 133 (732)
........+...++......+++ +.-+++|..+.+..|...+.++.+|..|.+ .|++.. ++..
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~ 1826 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYF 1826 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHH
Confidence 11122233455555555555554 456889999999999887777878755532 344444 5555
Q ss_pred HHHHHhcCCCC--------HHHHHHHHHHHHH---cCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCC
Q 004753 134 YELAFHFNPHC--------AEACNNLGVIYKD---RDN-------LDKAVECYQMALSIKPNFSQSLNNLGVVYTV-QGK 194 (732)
Q Consensus 134 ~~~al~~~p~~--------~~~~~~la~~~~~---~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~ 194 (732)
|.+++..+... ...|..+|..... .++ .+.--...+++++.-|... .+..+.++..+ ...
T Consensus 1827 ~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~-f~ta~sQLlSRicH~ 1905 (2382)
T KOG0890|consen 1827 FGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQ-FYTAYSQLLSRICHP 1905 (2382)
T ss_pred HHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchH-HHHHHHHHHHHHcCC
Confidence 56666654332 2234444333322 111 1111222333444444432 22223333322 223
Q ss_pred HHHHHHHHHHH----HHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCChhHH
Q 004753 195 MDAAAEMIEKA----IAANPTYAEAYNNLGVLYR-DAGSISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 195 ~~eA~~~l~~a----l~~~p~~~~~~~~La~~~~-~~g~~~eA~~~~~~al~l~p~~~~a~ 250 (732)
.++....+... +...|.. ..|..++..-. ...+.+.+.+.+.++....++.....
T Consensus 1906 ~~dV~~vl~~II~~l~~~YPqq-~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~~~l~ 1965 (2382)
T KOG0890|consen 1906 NQDVARVLKHIIAKLVLAYPQQ-TLWQSAALSKSNVPSRVERCKEILTKSRRQKPDYKKLL 1965 (2382)
T ss_pred chHHHHHHHHHHHHHHHhCchH-HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 33443333333 3335542 23333333221 12345667777778887777765544
No 462
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=5 Score=44.48 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004753 15 LMQYDTALGCYEKAALE------------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 64 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 64 (732)
...|++|...|.-+... .|-+...+..++.++..+|+.+-|.+..++++-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45688888888888663 566788999999999999999998888888764
No 463
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.07 E-value=0.11 Score=53.55 Aligned_cols=86 Identities=22% Similarity=0.225 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC
Q 004753 482 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 560 (732)
Q Consensus 482 ~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~-Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~ 560 (732)
....+.++...+++..|+..|+++-.|........ ..+.+. +. ..++.+.... ....++..||.++ .
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~---~~~~~~~~~-~~~~~~~~~~----~~~~Ll~~s~~Vv----t 205 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKY---SYLEELPNL-PNVVIIDDDV----NLYELLEQSDAVV----T 205 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCCh---hHhhhhhcC-CCeEEECCCC----CHHHHHHhCCEEE----E
Confidence 34567788888889999999999876621111111 222332 22 3444444443 2344555688886 5
Q ss_pred CCcccHHHhhhcCCCeeec
Q 004753 561 AGTTTTCESLYMGVPCVTM 579 (732)
Q Consensus 561 ~g~~t~~eal~~GvPvvt~ 579 (732)
-.+|+.+|||.+|+|||++
T Consensus 206 inStvGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 206 INSTVGLEALLHGKPVIVF 224 (269)
T ss_pred ECCHHHHHHHHcCCceEEe
Confidence 6788999999999999994
No 464
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.93 E-value=0.091 Score=50.92 Aligned_cols=65 Identities=29% Similarity=0.527 Sum_probs=57.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 187 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 187 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.....
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa 67 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAA 67 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchh
Confidence 34567789999999999999999999999999999999999999999999999999998765443
No 465
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.90 E-value=3 Score=46.56 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=114.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALE--------------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 70 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 70 (732)
|-.+|....+.=+++-|.+.|.+.-.. ....+. -..+|.++...|++.+|.+.|.+.=..+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enR--- 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENR--- 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhh---
Confidence 566777777777888888887765221 111122 34578888889999999999877421111
Q ss_pred HHHHHHH-HHHHHhhhhHhhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH----------HH
Q 004753 71 IAKNNMA-IALTDLGTKVKLEGDINQGVAYYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFYE----------LA 137 (732)
Q Consensus 71 ~~~~~la-~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------~a 137 (732)
+..... .-++..++-+...|.-++-..+.++--+. +-+.+. ..+..+...|+.++|+...- -+
T Consensus 664 -AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 664 -ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred -HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 111100 01223334444445544444444332211 111121 23556677777777766432 22
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 138 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 138 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
-+++....+.+..++..+.....+.-|.+.|++.-. ...+...+...+++.+|....++--+.- +.+|+
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~ 808 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYM 808 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccc
Confidence 233444445555555555666666666666655421 1233445566778888777666543332 23455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 004753 218 NLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 218 ~La~~~~~~g~~~eA~~~~~~a 239 (732)
-.|+.+....+++||.+.|.+|
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHh
Confidence 5566555666666666555554
No 466
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.89 E-value=0.57 Score=50.66 Aligned_cols=90 Identities=8% Similarity=0.014 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 004753 95 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN-LDKAVECYQMALS 173 (732)
Q Consensus 95 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 173 (732)
.-...|+.++...+.+...|........+.+.+.+-.+.|.+++..+|+++..|..-|.-.+.-+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 344566666666666777777666666666667777777777777777777777666655554443 6667777777777
Q ss_pred hCCCCHHHHHH
Q 004753 174 IKPNFSQSLNN 184 (732)
Q Consensus 174 ~~p~~~~~~~~ 184 (732)
.+|+.+..|..
T Consensus 169 ~npdsp~Lw~e 179 (568)
T KOG2396|consen 169 FNPDSPKLWKE 179 (568)
T ss_pred cCCCChHHHHH
Confidence 77776665543
No 467
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=93.82 E-value=1 Score=48.35 Aligned_cols=111 Identities=13% Similarity=-0.015 Sum_probs=63.8
Q ss_pred CCcEEEecCC--CCcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCc-EEEcCCcCCcHH
Q 004753 469 GFITFGSFNN--LAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLR-VDLLPLILLNHD 543 (732)
Q Consensus 469 ~~~~f~~~~~--~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~-~~r-v~~~~~~~~~~~ 543 (732)
..|+|....+ ..|. .++-+...++-|.. .+.+++|.|++ ..++...+..+..+-. ..+ +.+.|..+ -.+
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~----~e~~~~~~i~~~~~~~~~~~~~~l~g~~s-L~e 254 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSA----KDHEAGNEILAALNTEQQAWCRNLAGETQ-LEQ 254 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCH----HhHHHHHHHHHhcccccccceeeccCCCC-HHH
Confidence 3455555443 2443 34445555544432 46677777765 2333333322222211 123 55667665 578
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccch
Q 004753 544 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
..+++..||+++ .+-+-.+==|-++|+|+|++-|.+...+.+
T Consensus 255 l~ali~~a~l~I----~nDTGp~HlAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 255 AVILIAACKAIV----TNDSGLMHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHHHHHhCCEEE----ecCChHHHHHHHhCCCEEEEECCCCccccC
Confidence 999999999997 211223344778899999999987766555
No 468
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=93.81 E-value=0.084 Score=50.05 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=56.6
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcc---cccchhHHhhhcCCCcccc--
Q 004753 530 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIA-- 603 (732)
Q Consensus 530 ~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~s~l~~~gl~~~ia-- 603 (732)
.+|.+.+..+ ++..++..+|+++ . +|+.|+.|++++|+|.|..+-... ....-+..+...|....+.
T Consensus 55 ~~v~~~~~~~---~m~~~m~~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVD---NMAELMAAADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSS---SHHHHHHHHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechh---hHHHHHHHcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc
Confidence 5788888865 3555666699998 5 667899999999999887765541 1222344566666654443
Q ss_pred -CCHHHHHHHHHHhhcCHHHHHHHH
Q 004753 604 -KNEDEYVQLALQLASDVTALANLR 627 (732)
Q Consensus 604 -~~~~~y~~~a~~l~~d~~~~~~~r 627 (732)
.+.+...+....+..++..+..+.
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~ 152 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMA 152 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 335667777778888886655443
No 469
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=2.2 Score=47.55 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=79.7
Q ss_pred HHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 004753 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 148 (732)
Q Consensus 75 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 148 (732)
.+-.++.+.+.-.++..+|..++++|+..+...|.+ .....+++.+|..+.+.+.|.+++++|-+.+|.++-..
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 334455566666777788999999999888876654 34677888899999999999999999999998888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 149 NNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
..+-.+....++-++|+.+..+....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 88888888888889998888877654
No 470
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.56 E-value=0.67 Score=41.31 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 179 SQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 179 ~~~~~~la~~~~~~g---~~~eA~~~l~~al~-~~p~-~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
....++++.++.... +..+.+.+++..++ -.|. .-+..+.|+..+.+.|+|++++.+.+..++..|+|..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456778888877654 45677888888886 3443 3467788899999999999999999999999999887754
No 471
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.44 E-value=9.4 Score=39.37 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 004753 115 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVEC 167 (732)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~ 167 (732)
..++.+..++|+..+|.+.++...+..|-. ..++-|+...+....-|.+....
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777666655522 22344444444444444433333
No 472
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.44 E-value=19 Score=41.84 Aligned_cols=217 Identities=12% Similarity=0.022 Sum_probs=136.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK---NRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+..|-.++...|++++-...-+++.++.|..+..|.....-.. ..++-.++...|++++...- ....|...+..+.
T Consensus 116 ~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~-~v~iw~e~~~y~~ 194 (881)
T KOG0128|consen 116 MVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN-SVPIWEEVVNYLV 194 (881)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc-cchHHHHHHHHHH
Confidence 3455566778888888777777777788887777766554333 24677888888888886443 3446666666666
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNL 151 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 151 (732)
..+..+...++++.-...|.+++..-.. ....+...-..|...-..++-+.++...+...-+. ...+...
T Consensus 195 ~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~ 274 (881)
T KOG0128|consen 195 GFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQ 274 (881)
T ss_pred hccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 6677777778999999999998865322 23345555556666666677777777777654211 1111111
Q ss_pred H---HHHHHcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 152 G---VIYKDRDNLDKAVECYQM-------ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 152 a---~~~~~~g~~~~A~~~~~~-------al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
. .......+++.|.+-+.+ .++..+.....|..+-......|..-.-...+++++.-.+.+...|...+.
T Consensus 275 sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~ 354 (881)
T KOG0128|consen 275 SKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGV 354 (881)
T ss_pred HhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhh
Confidence 1 111233455555544333 333344444566677777777888777777788887776666666665554
Q ss_pred H
Q 004753 222 L 222 (732)
Q Consensus 222 ~ 222 (732)
.
T Consensus 355 ~ 355 (881)
T KOG0128|consen 355 Y 355 (881)
T ss_pred h
Confidence 3
No 473
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.40 E-value=0.97 Score=48.18 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCC
Q 004753 483 TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG 562 (732)
Q Consensus 483 ~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g 562 (732)
..+-+...++.|.. .+..++|.|++ ..++...+ +.+. .....+.+.|... -.+..+++..||+++-. -
T Consensus 192 p~e~~~~li~~l~~-~~~~ivl~G~~----~e~~~~~~-i~~~-~~~~~~~l~g~~s-L~el~ali~~a~l~I~~----D 259 (334)
T TIGR02195 192 PHEHYAELAKRLID-QGYQVVLFGSA----KDHPAGNE-IEAL-LPGELRNLAGETS-LDEAVDLIALAKAVVTN----D 259 (334)
T ss_pred CHHHHHHHHHHHHH-CCCEEEEEECh----hhHHHHHH-HHHh-CCcccccCCCCCC-HHHHHHHHHhCCEEEee----C
Confidence 33444444444443 35778888765 22222222 2222 2223344777665 57899999999999721 1
Q ss_pred cccHHHhhhcCCCeeecCCCcccccch
Q 004753 563 TTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 563 ~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
+-.+==|-++|+|+|++-|.+...+.+
T Consensus 260 SGp~HlAaA~~~P~i~lfG~t~p~~~~ 286 (334)
T TIGR02195 260 SGLMHVAAALNRPLVALYGSTSPDFTP 286 (334)
T ss_pred CHHHHHHHHcCCCEEEEECCCChhhcC
Confidence 222334668899999999998766654
No 474
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=93.36 E-value=2.9 Score=46.29 Aligned_cols=180 Identities=17% Similarity=0.154 Sum_probs=112.7
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-----HHHHHHHHHHH----HcCCCCC-cE
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-----SVRHRFLSTLE----QLGLESL-RV 532 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~-----~~~~~~~~~~~----~~Gv~~~-rv 532 (732)
|..++.++-|+ .|..+.=+.++.+.|++.|+ .+|+-++.+.... .++.++.+... +.|-..- =|
T Consensus 254 ~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv 333 (474)
T PRK10117 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPL 333 (474)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeE
Confidence 34466677888 89999999999999999987 4566566554221 23444433332 3343211 15
Q ss_pred EEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHHHhhhcCCCeeecCCCcccccch--hHHhhhcCCCccc--cCCHH
Q 004753 533 DLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLI--AKNED 607 (732)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~eal~~GvPvvt~~g~~~~~r~~--~s~l~~~gl~~~i--a~~~~ 607 (732)
+++.+.-++++..++|..+||+|.|+---|-+ ++-|-.++--| .-+|-..-|+.+ +..|. | -++ ..|.+
T Consensus 334 ~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~--~~~GvLILSefAGaA~~L~--~--AllVNP~d~~ 407 (474)
T PRK10117 334 YYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDP--ANPGVLVLSQFAGAANELT--S--ALIVNPYDRD 407 (474)
T ss_pred EEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecC--CCCccEEEecccchHHHhC--C--CeEECCCCHH
Confidence 66555444788999999999999999887755 88888887543 011211223332 22222 1 122 35777
Q ss_pred HHHHHHH-HhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 608 EYVQLAL-QLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 608 ~y~~~a~-~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
+.++... +|.-.++.+.+..+.+++.+.+ .|...|+..+-+.+..+.
T Consensus 408 ~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 408 EVAAALDRALTMPLAERISRHAEMLDVIVK---NDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---CCHHHHHHHHHHHHHHhh
Confidence 7665443 3444777777777777777665 488888888777666553
No 475
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.31 E-value=0.91 Score=44.87 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 215 AYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
+.+.+|.++.+.|++++|..+|.+++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4445555555555555555555555543
No 476
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.28 E-value=12 Score=48.31 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 177 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 177 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
...+.|...|++....|+++.|..++-+|.+.. -++++...|+.+...|+-..|+..+++.++++
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 346799999999999999999999999997766 67889999999999999999999999999653
No 477
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=93.24 E-value=1.1 Score=46.68 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=82.7
Q ss_pred CCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEc-CCcCCcHHHHH
Q 004753 469 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLL-PLILLNHDHMQ 546 (732)
Q Consensus 469 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~-~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~-~~~~~~~~~~~ 546 (732)
-.|..|+.+...-.|-+.++...+-. ..+.++++- +-|...+.-++++.+...++-- .+++..+ ..+| -+||++
T Consensus 186 ltILvGNSgd~sNnHieaL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~-~~~~~iL~e~mp-f~eYl~ 261 (360)
T PF07429_consen 186 LTILVGNSGDPSNNHIEALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFG-AENFQILTEFMP-FDEYLA 261 (360)
T ss_pred eEEEEcCCCCCCccHHHHHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcC-ccceeEhhhhCC-HHHHHH
Confidence 34556666666666666665444422 234555542 3333345678888888877644 3566554 4565 799999
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccc
Q 004753 547 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI 602 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~i 602 (732)
.+..||+..-.+.- -|--|+|=.|++|+||+-....+ -...|+..|++=+.
T Consensus 262 lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np-----~~~~l~~~~ipVlf 313 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNP-----FWQDLKEQGIPVLF 313 (360)
T ss_pred HHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCCh-----HHHHHHhCCCeEEe
Confidence 99999999977765 44448999999999999855443 33567777887543
No 478
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.17 E-value=0.9 Score=43.49 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALS 173 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 173 (732)
.++..+|..|.+.|++++|++.|.++....... ...+.++..+....+++.....++.++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666666666666666666655442221 33444555555555555555555555543
No 479
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=93.03 E-value=1.6 Score=48.68 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=95.4
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC--H---HHHHHHHHHHH----HcCCCC-Cc
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC--D---SVRHRFLSTLE----QLGLES-LR 531 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~--~---~~~~~~~~~~~----~~Gv~~-~r 531 (732)
++..++.+.-|+ .|..+.-+.++.+.|++.|+ .+|+-++.+... + .+++.+.+... +.|-.. .-
T Consensus 274 ~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~P 353 (474)
T PF00982_consen 274 GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTP 353 (474)
T ss_dssp T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-S
T ss_pred CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCcee
Confidence 344677788888 89999999999999999988 445545443321 1 23333333332 345421 23
Q ss_pred EEEcCCcCCcHHHHHhcccccEEecCCCCCC-cccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCC-c-cc--cCCH
Q 004753 532 VDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLK-H-LI--AKNE 606 (732)
Q Consensus 532 v~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~-~-~i--a~~~ 606 (732)
|+++....+.++.+++|..+||+|.|+.--| ..+..|-.++-.+ -+|-..-|+.+.+ +-.|. . ++ ..|.
T Consensus 354 I~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~---~~GvLiLSefaGa---a~~L~~~al~VNP~d~ 427 (474)
T PF00982_consen 354 IIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDD---NPGVLILSEFAGA---AEQLSEAALLVNPWDI 427 (474)
T ss_dssp EEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-T---S--EEEEETTBGG---GGT-TTS-EEE-TT-H
T ss_pred EEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecC---CCCceEeeccCCH---HHHcCCccEEECCCCh
Confidence 6666654457899999999999999999977 5589999998665 2222222333211 01222 1 22 2466
Q ss_pred HHHHHHHHHhh-cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 607 DEYVQLALQLA-SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 607 ~~y~~~a~~l~-~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
++.++...+-. -.++.++...+.+++.+.+. |...|+..+-+.+
T Consensus 428 ~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~---~~~~W~~~~l~~L 472 (474)
T PF00982_consen 428 EEVADAIHEALTMPPEERKERHARLREYVREH---DVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhC---CHHHHHHHHHHHh
Confidence 66655444333 36777777777888877664 6777777665443
No 480
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.02 E-value=7.9 Score=36.31 Aligned_cols=143 Identities=14% Similarity=0.063 Sum_probs=101.7
Q ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHH
Q 004753 85 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 162 (732)
..|...+.-.++-..|..++++ .+.++.++|+..|...-+-.-.. ..+.+..+.+..+.|+..
T Consensus 47 y~yw~~s~as~sgd~flaAL~l---------------A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta 111 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKL---------------AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA 111 (221)
T ss_pred eehhcccccccchHHHHHHHHH---------------HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH
Confidence 3344455555555555555543 35678889999988876654433 346677889999999999
Q ss_pred HHHHHHHHHHhhCCC--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 163 KAVECYQMALSIKPN--FS--QSLNNLGVVYTVQGKMDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYE 237 (732)
Q Consensus 163 ~A~~~~~~al~~~p~--~~--~~~~~la~~~~~~g~~~eA~~~l~~al-~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~ 237 (732)
.|+..|.++-.-.+. -. .+...-+.++...|-|++-..-.+..- ..+|-...+.-.||..-.+.|++.+|.+.|.
T Consensus 112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 999999998665432 11 244556677888999988776665542 2245556677889999999999999999999
Q ss_pred HHHhh
Q 004753 238 QCLKI 242 (732)
Q Consensus 238 ~al~l 242 (732)
+...-
T Consensus 192 qia~D 196 (221)
T COG4649 192 QIAND 196 (221)
T ss_pred HHHcc
Confidence 98873
No 481
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.87 E-value=0.1 Score=52.49 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=83.5
Q ss_pred cCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCc--ccccchhHHhhhcCCCccc
Q 004753 525 LGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV--HAHNVGVSLLTKVGLKHLI 602 (732)
Q Consensus 525 ~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~--~~~r~~~s~l~~~gl~~~i 602 (732)
+|-+.-+|+|. ++.|-..++.+|+.| -..||.+=.+.-.|+|||..+|.. +.--.+..-.+-+|+.=..
T Consensus 291 ~~kdnc~l~ls-----qqsfadiLH~adaal----gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltl 361 (412)
T COG4370 291 FGKDNCSLWLS-----QQSFADILHAADAAL----GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTL 361 (412)
T ss_pred hccCceEEEEe-----HHHHHHHHHHHHHHH----HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeee
Confidence 34444456653 567888888899976 467899999999999999999852 2211222234556776555
Q ss_pred cCCHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 603 AKNEDEYVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 603 a~~~~~y~~~a~~-l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
...++.-.+.+++ +..|++.+.++|..-++|+-+ ..-++++.+...+||
T Consensus 362 v~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq------aGaa~rIAe~l~e~a 411 (412)
T COG4370 362 VRPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ------AGAARRIAEELGEMA 411 (412)
T ss_pred cCCchhhHHHHHHHHhcChHHHHHHHhcchhhccC------cchHHHHHHHHHHhc
Confidence 6666666667776 999999999999988888643 346667777666665
No 482
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=12 Score=38.82 Aligned_cols=243 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAAL------ERPM----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 71 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 71 (732)
+......+......+++++++..|.+.+. .++. .......+|..|.+.|+.++-.......-........
T Consensus 4 ~~~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K 83 (411)
T KOG1463|consen 4 AASLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK 83 (411)
T ss_pred hHHHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh
Q ss_pred H---------------------------------------HHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh------
Q 004753 72 A---------------------------------------KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------ 106 (732)
Q Consensus 72 ~---------------------------------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 106 (732)
+ .+..-..-..+...|...++|.+|+......+..
T Consensus 84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD 163 (411)
T KOG1463|consen 84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD 163 (411)
T ss_pred HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004753 107 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 179 (732)
Q Consensus 107 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 179 (732)
.+.-.+++..=...|....+..+|...+..|-.....- +..-..-|.++....+|.-|..+|-++++-...-.
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~ 243 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD 243 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC
Q ss_pred H--------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCC
Q 004753 180 Q--------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG--SISLAIDAYEQCLKIDP 244 (732)
Q Consensus 180 ~--------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g--~~~eA~~~~~~al~l~p 244 (732)
. -|..|..+....-+--.++-.-+.+++....+.++....+.++.+.. +|+.|+.-|++-+..+|
T Consensus 244 ~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 244 DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
No 483
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=92.70 E-value=0.63 Score=49.64 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=47.3
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCC
Q 004753 480 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 559 (732)
Q Consensus 480 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 559 (732)
.++-|.+++++.++.+.. .++++.+.. . .+.+++..... ..+.+.+. . ...+..||++|
T Consensus 182 ~~llP~~~~aa~~L~~~~--~~~~i~~a~----~-~~~i~~~~~~~----~~~~~~~~---~---~~~m~~aDlal---- 240 (347)
T PRK14089 182 KRLMPIFKELAKKLEGKE--KILVVPSFF----K-GKDLKEIYGDI----SEFEISYD---T---HKALLEAEFAF---- 240 (347)
T ss_pred HHHHHHHHHHHHHHhhcC--cEEEEeCCC----c-HHHHHHHHhcC----CCcEEecc---H---HHHHHhhhHHH----
Confidence 355577777777666543 455554433 1 14444444322 12334431 2 34567799998
Q ss_pred CCCcccHHHhhhcCCCeee
Q 004753 560 YAGTTTTCESLYMGVPCVT 578 (732)
Q Consensus 560 ~~g~~t~~eal~~GvPvvt 578 (732)
...||+|+|++.+|+|.|.
T Consensus 241 ~~SGT~TLE~al~g~P~Vv 259 (347)
T PRK14089 241 ICSGTATLEAALIGTPFVL 259 (347)
T ss_pred hcCcHHHHHHHHhCCCEEE
Confidence 6678888899999999887
No 484
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.50 E-value=1.5 Score=40.00 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004753 154 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 229 (732)
Q Consensus 154 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~ 229 (732)
.-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 3334555556655555555556666666666666666666666666666666555555555555566666666654
No 485
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=1.1 Score=49.70 Aligned_cols=102 Identities=11% Similarity=-0.061 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004753 38 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 117 (732)
Q Consensus 38 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 117 (732)
.+.+-|.-.++..+|..+++.|+..+...|.+...... +.....+..+|....+.++|.++++.|-+.+|.++-....+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45566777888999999999999999998887655443 77778888888888999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q 004753 118 GVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~ 140 (732)
..+....++-++|+.+..+....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88889999999999998877654
No 486
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=7.2 Score=43.27 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=104.0
Q ss_pred hcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------
Q 004753 89 LEGDINQGVAYYKKALYY------------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------- 140 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 140 (732)
....|++|...|.-+... .|-+.+.+..++.+...+|+.+.|..+.++++-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345688888888887765 3556788999999999999998888887777632
Q ss_pred -----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH---
Q 004753 141 -----NPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FSQSLNNLGVVYT-VQGKMDAAAEMIEKAIA--- 207 (732)
Q Consensus 141 -----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~eA~~~l~~al~--- 207 (732)
.|.+-. +++..-..+.+.|-+..|.++++-.++++|. +|.+...+..+|. +..+|+=-++.++..-.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 122222 2223334556788899999999999999988 7776666665553 45566666666555522
Q ss_pred --hCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Q 004753 208 --ANPTYAEAYNNLGVLYRDAGS---ISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 208 --~~p~~~~~~~~La~~~~~~g~---~~eA~~~~~~al~l~p~ 245 (732)
.-|+. ..-..+|..|..... .+.|...+.+|+.+.|.
T Consensus 410 l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 410 LSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 22332 222345555555544 56788888888888774
No 487
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.42 E-value=0.26 Score=34.07 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAAL 30 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 30 (732)
.++.++|.+|...|++++|+.++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3445555555555555555555555544
No 488
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.41 E-value=1.9 Score=46.37 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=79.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCC
Q 004753 13 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 92 (732)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~ 92 (732)
...|+.-.|-+-...++...|..+......+.++..+|+|+.|...+..+-..-.........+...+.. .++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~-------l~r 372 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG-------LAR 372 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc-------hhh
Confidence 4567777777777777777777777777778888888888887777655544322222222222222223 447
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004753 93 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 144 (732)
Q Consensus 93 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 144 (732)
+++|....+-.+...-+.+++....+.....+|-++++..++++.+.++|..
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 7777777777776665666655555555556667777777777777776654
No 489
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.39 E-value=2.4 Score=37.93 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 145 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 145 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
....+++++++.... +..+.+.+++..++ -.|.. -++.+.|+..+.+.++|++++.+.+..++..|++.++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456667777766543 34566777777775 33322 346677777777888888888888888777777766543
No 490
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=92.35 E-value=3.6 Score=42.95 Aligned_cols=126 Identities=15% Similarity=0.273 Sum_probs=84.8
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcE--EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~--l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
+++..+.++++--. ...+++.....+-.-.|+.. -+|+-+|+..+..++.+...+.+ ...|.+... ..++
T Consensus 217 pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~----~p~i~I~~f---~~~~ 288 (400)
T COG4671 217 PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPK----RPHISIFEF---RNDF 288 (400)
T ss_pred CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhccc----CCCeEEEEh---hhhH
Confidence 67777777776543 23577777777776667766 44555677777777777665433 355777766 4577
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcc--cccchhHHhhhcCCCcccc
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH--AHNVGVSLLTKVGLKHLIA 603 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~--~~r~~~s~l~~~gl~~~ia 603 (732)
..++..||+.+. -+|=+|+||-|..|+|.+..+-..- -.-+-|.-|..+||-+.+-
T Consensus 289 ~~ll~gA~~vVS---m~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~ 346 (400)
T COG4671 289 ESLLAGARLVVS---MGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLL 346 (400)
T ss_pred HHHHHhhheeee---cccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeC
Confidence 888888999872 2777899999999999887652211 2223455677788877664
No 491
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=14 Score=37.45 Aligned_cols=201 Identities=12% Similarity=0.070 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHH-HHH
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERP--------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK-NNM 76 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l 76 (732)
..+|......+++++|+..|.+.+...- ....+...++.+|...|++..-.+.....-+...+..... ..+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5678888899999999999999987621 1245778899999999987654444333222111110000 000
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC 144 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 144 (732)
...++ ...-.....++.-++.+...++...... ..-..+..++++.|+|.+|+......+.. .++-
T Consensus 87 irtLi--ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 87 IRTLI--EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHH--HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 11111 1111223344455555554444322211 12234555666667777776666554432 2223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFSQSL--NNLGVVYTVQGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~--~~la~~~~~~g~~~eA~~~l~~al~~ 208 (732)
...+..-..+|....+..++...+..|-.. .|....+. ..-|.......+|.-|..+|-++++-
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 444555555555555555555554444322 12211111 12233444555566666665555543
No 492
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=7.5 Score=42.89 Aligned_cols=207 Identities=12% Similarity=0.075 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALT 81 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~ 81 (732)
.+..+..+...|+.+.|+..++..++..-. ..-.++.+|.++..+.+|..|...+....+.+.-....+..++ -++.
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 456677788888888899999888771111 2346788999999999999999999998877644332222222 2222
Q ss_pred HhhhhHh-hcCCHHHHHHHHHHHHH---hCCCCHH--------------------------HHHHHHHHHHH--cCCHHH
Q 004753 82 DLGTKVK-LEGDINQGVAYYKKALY---YNWHYAD--------------------------AMYNLGVAYGE--MLKFDM 129 (732)
Q Consensus 82 ~lg~~~~-~~g~~~~A~~~~~~al~---~~p~~~~--------------------------~~~~la~~~~~--~g~~~~ 129 (732)
.-..... ..|+-++|..+++...+ ..|.+.. .++.++..+.. ....++
T Consensus 350 ~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~ 429 (546)
T KOG3783|consen 350 QNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNE 429 (546)
T ss_pred ccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhh
Confidence 1111111 23355555544443322 2121110 11222222211 111222
Q ss_pred HHHHHHHHHh---c-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC----CHHHHHHHHHHHHHcCC-HH
Q 004753 130 AIVFYELAFH---F-NPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSI---KPN----FSQSLNNLGVVYTVQGK-MD 196 (732)
Q Consensus 130 A~~~~~~al~---~-~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~ 196 (732)
.. -++...+ . ++++ .--+..+|.++..+|+...|..+|+..++. ... .|.+++.+|..+..++. ..
T Consensus 430 l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~ 508 (546)
T KOG3783|consen 430 LE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLK 508 (546)
T ss_pred HH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChH
Confidence 22 1111111 1 2222 234567899999999999999999988743 112 26699999999999999 99
Q ss_pred HHHHHHHHHHHhCCCC
Q 004753 197 AAAEMIEKAIAANPTY 212 (732)
Q Consensus 197 eA~~~l~~al~~~p~~ 212 (732)
++.+++.+|-+...++
T Consensus 509 e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 509 EARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999998776443
No 493
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=92.25 E-value=3.9 Score=45.05 Aligned_cols=95 Identities=11% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC----
Q 004753 529 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---- 604 (732)
Q Consensus 529 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---- 604 (732)
++|+.++.......+....+..||+++-+- --+++=|+.+|||+|.+.= +.=..+++..+|+++++.+
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl~ig~R----lHa~I~a~~~gvP~i~i~Y----~~K~~~~~~~lg~~~~~~~~~~l 377 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACELTVGTR----LHSAIISMNFGTPAIAINY----EHKSAGIMQQLGLPEMAIDIRHL 377 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCEEEEec----chHHHHHHHcCCCEEEeee----hHHHHHHHHHcCCccEEechhhC
Confidence 455544322122457888899999997332 2267889999999998662 3445678899999998542
Q ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 004753 605 NEDEYVQLALQLASDVTALANLRMSLRDLM 634 (732)
Q Consensus 605 ~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~ 634 (732)
+.++.++...++..|. .++|+.++.++
T Consensus 378 ~~~~Li~~v~~~~~~r---~~~~~~l~~~v 404 (426)
T PRK10017 378 LDGSLQAMVADTLGQL---PALNARLAEAV 404 (426)
T ss_pred CHHHHHHHHHHHHhCH---HHHHHHHHHHH
Confidence 5678888888888876 34444544443
No 494
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.22 E-value=1.9 Score=39.36 Aligned_cols=80 Identities=15% Similarity=0.011 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004753 115 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 194 (732)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 194 (732)
..+...-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+-.+..+...-.++.|+..+|+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33334444456666666666666566666666666666666666666666666666665555555555555555555554
No 495
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=9.3 Score=38.65 Aligned_cols=203 Identities=14% Similarity=0.026 Sum_probs=125.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHH---HHhC--CCCHHH
Q 004753 40 CNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA---LYYN--WHYADA 113 (732)
Q Consensus 40 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~--p~~~~~ 113 (732)
..+|+-..+.+++++|+..|.+.+...-. +.......-.+..+++.+|...|++..-.+..... .... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 56777788899999999999999876322 22233334455667788888888776544433322 2211 111222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Q 004753 114 MYNLGVAY-GEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQ 180 (732)
Q Consensus 114 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 180 (732)
...+-.-+ .....++.-++.++..++..... ...-..+..++++.|+|.+|+......+.. .++...
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22221111 22334555566666555543221 123356788899999999999988766543 344456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTYAE--AYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~--~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
.+..-..+|....+..++...+..|-.. .|.... .-..-|..+....+|.-|..+|-++++-
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 7777788888888888888877766443 233222 2223456667788999999999988864
No 496
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=13 Score=39.59 Aligned_cols=134 Identities=19% Similarity=0.040 Sum_probs=92.4
Q ss_pred HHHCCCHHHHHHHHHHHHhh-CCCCHH-HHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 004753 46 YKNRGDLESAIACYERCLAV-SPNFEI-AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNL 117 (732)
Q Consensus 46 ~~~~g~~~~A~~~~~~al~~-~p~~~~-~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l 117 (732)
++.++++.+|.++-+..+.. .-.+.. .-..-+.+|+.+...|...++...-...+...+.... ..+...+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34568899998888776543 111111 2223366777778888888887766666655554321 123355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004753 118 GVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 179 (732)
Q Consensus 118 a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 179 (732)
-..|...+.|+.|.+...+..-- +...+...+.+|.+..-+++|..|.+++-+|+...|+..
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 77888899999999888776521 112356778899999999999999999999999999753
No 497
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.05 E-value=2.2 Score=45.39 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=103.5
Q ss_pred CCCcEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 468 NGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 468 ~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
+..++..++.|.. +.-...++...+|+...|+..++.-..+. +.+++.. ...+|= .+||.+++.+. ..+|
T Consensus 203 ~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~--~~v~e~~---~~~L~~-~~~v~li~pl~-~~~f 275 (383)
T COG0381 203 DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPR--PRVRELV---LKRLKN-VERVKLIDPLG-YLDF 275 (383)
T ss_pred cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCC--hhhhHHH---HHHhCC-CCcEEEeCCcc-hHHH
Confidence 3346677777653 44567788888999999888887744331 2233222 244444 47899999876 6889
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCc-ccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHH
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 623 (732)
..++..|=+.| ...|.-.=||-..|+||+++...+ -..++.+ |-.-+|-.+.+.-++.+..+..|++..
T Consensus 276 ~~L~~~a~~il----tDSGgiqEEAp~lg~Pvl~lR~~TERPE~v~a------gt~~lvg~~~~~i~~~~~~ll~~~~~~ 345 (383)
T COG0381 276 HNLMKNAFLIL----TDSGGIQEEAPSLGKPVLVLRDTTERPEGVEA------GTNILVGTDEENILDAATELLEDEEFY 345 (383)
T ss_pred HHHHHhceEEE----ecCCchhhhHHhcCCcEEeeccCCCCccceec------CceEEeCccHHHHHHHHHHHhhChHHH
Confidence 99988887776 455667789999999999987553 4456665 666677788899999999999998776
Q ss_pred HHHHH
Q 004753 624 ANLRM 628 (732)
Q Consensus 624 ~~~r~ 628 (732)
++|+.
T Consensus 346 ~~m~~ 350 (383)
T COG0381 346 ERMSN 350 (383)
T ss_pred HHHhc
Confidence 66554
No 498
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.00 E-value=18 Score=39.67 Aligned_cols=172 Identities=11% Similarity=-0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
+|+.++.+|... ..++-..++++.++.+-++...-..|+..|.+ ++-+++..+|.+++...-...
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~------------- 165 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRR------------- 165 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchh-------------
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 163 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 163 (732)
+...-.+.+++..++-+++.+..+.+-.-.....-...+.-.++........+ .++.+
T Consensus 166 --------q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~--------------eN~~e 223 (711)
T COG1747 166 --------QNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN--------------ENWTE 223 (711)
T ss_pred --------hhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc--------------cCHHH
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCC
Q 004753 164 AVECYQMALSIKPNFSQSLNNLGVVYTV--------------------QGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 164 A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~eA~~~l~~al~~~p~~ 212 (732)
|++.+...++.+..+..+..++...+.. -.++.+++.-|++.+..+..+
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
No 499
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.83 E-value=0.47 Score=51.46 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=70.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 158 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 234 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~ 234 (732)
.+....|+..|.++++..|.....+.+.+.++.+. |+.-.|+.-...++.++|....+++.|+.++..++++.+|++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34566788888888888888888888888777663 566677777778888888888888888888888888888888
Q ss_pred HHHHHHhhCCCC
Q 004753 235 AYEQCLKIDPDS 246 (732)
Q Consensus 235 ~~~~al~l~p~~ 246 (732)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 887777777754
No 500
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=91.72 E-value=10 Score=35.79 Aligned_cols=188 Identities=16% Similarity=0.146 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 2 QPAYYNLGVVYS-ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-----RGDLESAIACYERCLAVSPNFEIAKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~ 75 (732)
+++.+.||..+- -+.+|++|...|+.--+.+ ..+..-+.+|..++. .++...|++.++.+-.. +.+.+...
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~ 110 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRY 110 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhh
Confidence 355666666554 3567777777777654433 235555666655543 45788899999888763 33444444
Q ss_pred HHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 004753 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGV 153 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~ 153 (732)
++.++.+-..-....-+..+|.+++.++..+. +..+.++|...|..-.+ + +....|. .+. ..+.
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p~---~~~~ 176 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKPL---DRAE 176 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCCc---chhh
Confidence 44333221111111234778999999887654 56667777766654322 1 1111221 111 1233
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 004753 154 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 154 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~ 208 (732)
.+....+.++|.++.-++-++. ++.+..|+.+.|.. -++-++|..+-+++.++
T Consensus 177 ~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 3444567888888888887664 46666777776654 34677888888887765
Done!