Query 004753
Match_columns 732
No_of_seqs 1165 out of 3709
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:42:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 7E-115 2E-119 1010.8 61.4 584 77-670 9-719 (723)
2 3q3e_A HMW1C-like glycosyltran 100.0 3E-78 1E-82 667.0 31.5 396 250-662 224-629 (631)
3 2vsy_A XCC0866; transferase, g 100.0 1.4E-64 4.6E-69 580.9 65.3 552 90-663 2-566 (568)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.9E-27 1.3E-31 255.6 35.3 268 4-273 35-329 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 7.5E-27 2.6E-31 253.4 35.0 272 2-275 67-365 (388)
6 4eqf_A PEX5-related protein; a 100.0 8.2E-27 2.8E-31 250.7 27.5 238 3-247 66-315 (365)
7 2h6f_A Protein farnesyltransfe 99.9 1.9E-26 6.6E-31 249.0 27.4 246 2-255 97-361 (382)
8 3ieg_A DNAJ homolog subfamily 99.9 6.1E-25 2.1E-29 233.8 38.5 271 3-275 38-332 (359)
9 1fch_A Peroxisomal targeting s 99.9 5.3E-26 1.8E-30 244.0 30.5 262 3-274 65-355 (368)
10 3ieg_A DNAJ homolog subfamily 99.9 7.9E-25 2.7E-29 233.0 38.5 269 2-277 3-300 (359)
11 3hym_B Cell division cycle pro 99.9 2E-25 6.9E-30 235.1 32.7 262 3-273 23-294 (330)
12 2y4t_A DNAJ homolog subfamily 99.9 4.6E-25 1.6E-29 243.7 36.9 271 3-275 61-355 (450)
13 3hym_B Cell division cycle pro 99.9 3.4E-25 1.2E-29 233.3 32.9 246 3-255 57-312 (330)
14 3uq3_A Heat shock protein STI1 99.9 2E-25 6.9E-30 226.2 27.6 241 2-251 5-251 (258)
15 3cv0_A Peroxisome targeting si 99.9 3.3E-25 1.1E-29 233.1 29.5 262 3-273 22-310 (327)
16 3u4t_A TPR repeat-containing p 99.9 1.6E-25 5.4E-30 229.7 25.7 247 2-252 3-260 (272)
17 2y4t_A DNAJ homolog subfamily 99.9 2.4E-24 8.3E-29 237.9 37.1 268 2-276 26-322 (450)
18 3fp2_A TPR repeat-containing p 99.9 5.1E-24 1.8E-28 240.8 32.8 274 2-278 25-407 (537)
19 2pl2_A Hypothetical conserved 99.9 1.7E-24 5.8E-29 215.5 24.6 199 34-240 3-212 (217)
20 2xpi_A Anaphase-promoting comp 99.9 2E-23 6.7E-28 239.6 36.6 266 2-276 305-577 (597)
21 4eqf_A PEX5-related protein; a 99.9 1.3E-24 4.4E-29 233.5 24.5 241 2-242 99-356 (365)
22 3fp2_A TPR repeat-containing p 99.9 5.6E-24 1.9E-28 240.5 31.0 273 2-275 59-454 (537)
23 2pl2_A Hypothetical conserved 99.9 4.4E-24 1.5E-28 212.5 25.4 204 2-206 5-212 (217)
24 1fch_A Peroxisomal targeting s 99.9 7.8E-24 2.7E-28 227.1 26.3 240 2-242 98-359 (368)
25 2xpi_A Anaphase-promoting comp 99.9 6.2E-23 2.1E-27 235.4 35.3 243 3-252 340-589 (597)
26 3cv0_A Peroxisome targeting si 99.9 1.1E-23 3.6E-28 221.5 25.3 244 2-245 55-318 (327)
27 2gw1_A Mitochondrial precursor 99.9 2.8E-23 9.4E-28 233.1 29.3 272 2-277 6-400 (514)
28 4g1t_A Interferon-induced prot 99.9 1.9E-22 6.4E-27 224.5 32.8 266 2-274 51-359 (472)
29 2h6f_A Protein farnesyltransfe 99.9 1.1E-23 3.7E-28 227.5 21.1 224 29-262 90-322 (382)
30 2gw1_A Mitochondrial precursor 99.9 4.5E-23 1.6E-27 231.3 25.8 244 2-253 237-489 (514)
31 2q7f_A YRRB protein; TPR, prot 99.9 9.9E-23 3.4E-27 204.7 23.8 209 36-251 23-231 (243)
32 4g1t_A Interferon-induced prot 99.9 1.9E-21 6.4E-26 216.4 31.5 269 2-274 94-397 (472)
33 1ouv_A Conserved hypothetical 99.9 5.5E-21 1.9E-25 196.6 32.3 227 2-247 6-256 (273)
34 2q7f_A YRRB protein; TPR, prot 99.9 6.6E-22 2.3E-26 198.6 24.8 219 2-227 23-241 (243)
35 3sf4_A G-protein-signaling mod 99.9 2.8E-22 9.5E-27 217.5 22.7 276 2-278 9-336 (406)
36 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-21 3.9E-26 188.9 23.9 171 77-247 5-175 (184)
37 4a1s_A PINS, partner of inscut 99.9 1.9E-22 6.5E-27 220.0 20.5 274 3-277 49-371 (411)
38 2ho1_A Type 4 fimbrial biogene 99.9 3.4E-21 1.2E-25 195.0 27.9 213 31-250 31-246 (252)
39 2ho1_A Type 4 fimbrial biogene 99.9 6E-21 2.1E-25 193.2 29.5 211 2-219 37-249 (252)
40 3mkr_A Coatomer subunit epsilo 99.9 4.3E-21 1.5E-25 199.9 29.0 232 4-250 36-272 (291)
41 2vq2_A PILW, putative fimbrial 99.9 9.9E-21 3.4E-25 187.2 30.0 214 31-251 3-220 (225)
42 3ro2_A PINS homolog, G-protein 99.9 4E-22 1.4E-26 209.4 19.7 273 3-276 6-330 (338)
43 3vtx_A MAMA; tetratricopeptide 99.9 4.6E-21 1.6E-25 184.6 24.4 170 2-178 5-174 (184)
44 4abn_A Tetratricopeptide repea 99.9 1.3E-21 4.6E-26 218.3 23.2 215 17-239 83-318 (474)
45 3uq3_A Heat shock protein STI1 99.9 6.1E-21 2.1E-25 193.1 26.0 226 35-278 4-236 (258)
46 2vq2_A PILW, putative fimbrial 99.9 2.8E-20 9.5E-25 184.0 29.8 211 2-219 8-222 (225)
47 3u4t_A TPR repeat-containing p 99.9 5.9E-21 2E-25 195.5 23.6 234 35-276 2-248 (272)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.9E-21 2.3E-25 195.0 23.2 230 12-250 15-252 (275)
49 3mkr_A Coatomer subunit epsilo 99.9 3E-20 1E-24 193.6 27.7 242 10-268 7-253 (291)
50 3sf4_A G-protein-signaling mod 99.9 1.8E-21 6E-26 211.1 16.9 244 2-246 47-340 (406)
51 2ond_A Cleavage stimulation fa 99.9 7.9E-20 2.7E-24 191.9 28.0 223 19-248 33-276 (308)
52 3ulq_A Response regulator aspa 99.9 5.8E-21 2E-25 206.9 19.6 241 4-245 105-371 (383)
53 4i17_A Hypothetical protein; T 99.9 1.5E-19 5.2E-24 180.5 27.5 208 2-223 7-224 (228)
54 3ro2_A PINS homolog, G-protein 99.9 6.5E-21 2.2E-25 200.1 16.8 244 2-246 43-336 (338)
55 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.8E-20 2E-24 188.1 23.3 223 2-236 43-269 (275)
56 3nf1_A KLC 1, kinesin light ch 99.8 5.5E-21 1.9E-25 199.2 15.4 240 2-245 27-310 (311)
57 4a1s_A PINS, partner of inscut 99.8 5.2E-21 1.8E-25 208.6 15.6 243 2-245 86-375 (411)
58 4abn_A Tetratricopeptide repea 99.8 2.1E-20 7.3E-25 208.6 20.8 203 2-205 102-318 (474)
59 4gyw_A UDP-N-acetylglucosamine 99.8 2.2E-20 7.4E-25 217.1 21.3 173 31-210 4-176 (723)
60 4i17_A Hypothetical protein; T 99.8 5.3E-19 1.8E-23 176.5 27.7 206 33-252 4-219 (228)
61 1ouv_A Conserved hypothetical 99.8 3.7E-18 1.3E-22 175.4 33.7 224 32-276 2-249 (273)
62 3q15_A PSP28, response regulat 99.8 9.6E-20 3.3E-24 197.0 20.4 239 4-243 103-366 (378)
63 3dra_A Protein farnesyltransfe 99.8 4.9E-18 1.7E-22 176.4 28.0 242 12-253 42-299 (306)
64 1qqe_A Vesicular transport pro 99.8 2.2E-19 7.4E-24 187.1 17.4 219 17-250 32-277 (292)
65 3qky_A Outer membrane assembly 99.8 1.3E-18 4.5E-23 177.7 22.0 210 2-232 15-251 (261)
66 2ond_A Cleavage stimulation fa 99.8 6.1E-18 2.1E-22 177.5 27.2 222 53-276 33-268 (308)
67 2xm6_A Protein corresponding t 99.8 2.5E-16 8.6E-21 176.4 38.3 249 2-273 39-320 (490)
68 2xm6_A Protein corresponding t 99.8 2.3E-16 7.8E-21 176.7 37.7 229 2-242 111-396 (490)
69 3as5_A MAMA; tetratricopeptide 99.8 6.2E-18 2.1E-22 161.3 21.4 173 77-249 8-180 (186)
70 1hz4_A MALT regulatory protein 99.8 2.7E-17 9.3E-22 177.0 28.7 275 2-277 14-321 (373)
71 2pzi_A Probable serine/threoni 99.8 2E-18 6.7E-23 201.3 20.2 187 31-228 389-583 (681)
72 1qqe_A Vesicular transport pro 99.8 1.5E-18 5.3E-23 180.6 17.2 220 3-223 38-284 (292)
73 2pzi_A Probable serine/threoni 99.8 3E-18 1E-22 199.7 20.8 181 4-195 396-584 (681)
74 3edt_B KLC 2, kinesin light ch 99.8 2E-18 6.9E-23 176.6 16.2 227 13-243 12-282 (283)
75 4ga2_A E3 SUMO-protein ligase 99.8 9E-19 3.1E-23 163.2 11.4 146 83-228 3-149 (150)
76 3ulq_A Response regulator aspa 99.8 1E-17 3.5E-22 181.2 21.4 237 38-278 105-368 (383)
77 3qky_A Outer membrane assembly 99.8 3E-17 1E-21 167.5 23.5 202 29-251 8-233 (261)
78 3as5_A MAMA; tetratricopeptide 99.8 4.1E-17 1.4E-21 155.5 21.7 166 4-176 10-175 (186)
79 2ooe_A Cleavage stimulation fa 99.8 3.8E-16 1.3E-20 176.7 33.4 271 3-277 14-419 (530)
80 3urz_A Uncharacterized protein 99.8 1.5E-17 5.2E-22 163.9 17.3 167 80-247 7-191 (208)
81 2yhc_A BAMD, UPF0169 lipoprote 99.8 8.2E-17 2.8E-21 160.6 22.5 207 2-248 4-219 (225)
82 3urz_A Uncharacterized protein 99.7 3E-17 1E-21 161.7 18.4 168 2-177 4-189 (208)
83 3nf1_A KLC 1, kinesin light ch 99.7 7.8E-18 2.7E-22 175.2 12.6 243 32-276 23-305 (311)
84 3dss_A Geranylgeranyl transfer 99.7 1.2E-15 4.2E-20 159.2 29.1 234 13-251 40-313 (331)
85 2ooe_A Cleavage stimulation fa 99.7 2.6E-16 8.9E-21 178.1 25.1 220 19-245 255-495 (530)
86 4ga2_A E3 SUMO-protein ligase 99.7 9.2E-18 3.2E-22 156.3 10.2 147 7-160 2-149 (150)
87 3q15_A PSP28, response regulat 99.7 5E-16 1.7E-20 167.7 23.6 236 38-277 103-364 (378)
88 3e4b_A ALGK; tetratricopeptide 99.7 3.7E-16 1.3E-20 173.1 22.6 233 3-252 36-323 (452)
89 3e4b_A ALGK; tetratricopeptide 99.7 2.3E-15 7.9E-20 166.7 28.9 258 2-278 141-421 (452)
90 2x6q_A Trehalose-synthase TRET 99.7 5.3E-16 1.8E-20 169.9 22.2 337 298-656 40-414 (416)
91 1hz4_A MALT regulatory protein 99.7 7.3E-16 2.5E-20 165.7 22.2 242 3-244 54-324 (373)
92 2ifu_A Gamma-SNAP; membrane fu 99.7 1.5E-16 5.2E-21 166.7 16.2 204 14-250 3-231 (307)
93 4gco_A Protein STI-1; structur 99.7 2.4E-16 8.2E-21 142.0 15.0 116 106-221 8-123 (126)
94 3okp_A GDP-mannose-dependent a 99.7 2.5E-16 8.6E-21 170.7 17.0 335 298-657 4-380 (394)
95 4gco_A Protein STI-1; structur 99.7 4.4E-16 1.5E-20 140.2 15.4 118 136-253 4-121 (126)
96 3q7a_A Farnesyltransferase alp 99.7 5.8E-15 2E-19 154.7 25.5 243 4-252 56-342 (349)
97 3oy2_A Glycosyltransferase B73 99.7 2.6E-16 9E-21 172.1 15.8 339 300-660 2-394 (413)
98 3dra_A Protein farnesyltransfe 99.7 4.4E-15 1.5E-19 154.1 23.7 214 2-222 67-302 (306)
99 2r5s_A Uncharacterized protein 99.7 3E-16 1E-20 150.0 13.8 161 80-241 9-172 (176)
100 3edt_B KLC 2, kinesin light ch 99.7 7E-16 2.4E-20 157.6 17.4 204 2-209 43-282 (283)
101 3qou_A Protein YBBN; thioredox 99.7 2.4E-15 8.3E-20 156.0 19.7 160 82-241 122-283 (287)
102 2r5s_A Uncharacterized protein 99.7 8.7E-16 3E-20 146.8 15.0 164 3-173 7-172 (176)
103 2ifu_A Gamma-SNAP; membrane fu 99.6 4.8E-15 1.6E-19 155.3 20.7 202 15-234 29-253 (307)
104 3gyz_A Chaperone protein IPGC; 99.6 2.2E-16 7.6E-21 146.8 9.2 118 130-247 21-138 (151)
105 2vsy_A XCC0866; transferase, g 99.6 3.7E-15 1.3E-19 170.1 21.4 165 15-186 2-169 (568)
106 3dss_A Geranylgeranyl transfer 99.6 1E-13 3.6E-18 144.6 29.9 207 47-253 40-278 (331)
107 2gek_A Phosphatidylinositol ma 99.6 3.9E-16 1.3E-20 170.0 12.0 330 296-658 18-385 (406)
108 3qou_A Protein YBBN; thioredox 99.6 5.2E-15 1.8E-19 153.5 19.2 170 31-207 112-283 (287)
109 1p5q_A FKBP52, FK506-binding p 99.6 1.3E-16 4.5E-21 169.5 6.1 185 49-242 78-294 (336)
110 3rjv_A Putative SEL1 repeat pr 99.6 2.4E-14 8.1E-19 141.3 21.9 176 19-209 3-198 (212)
111 4f3v_A ESX-1 secretion system 99.6 6.5E-16 2.2E-20 156.8 10.5 220 39-269 10-262 (282)
112 2jjm_A Glycosyl transferase, g 99.6 6.5E-16 2.2E-20 167.8 11.1 276 367-663 89-392 (394)
113 3gyz_A Chaperone protein IPGC; 99.6 9.7E-16 3.3E-20 142.4 10.3 122 92-213 17-138 (151)
114 2r60_A Glycosyl transferase, g 99.6 9E-16 3.1E-20 172.3 11.7 185 466-660 258-463 (499)
115 4f3v_A ESX-1 secretion system 99.6 2.4E-15 8.3E-20 152.6 12.8 214 4-220 9-248 (282)
116 2fo7_A Synthetic consensus TPR 99.6 5E-14 1.7E-18 126.1 19.2 134 112-245 2-135 (136)
117 2vgx_A Chaperone SYCD; alterna 99.6 6.7E-15 2.3E-19 136.4 12.9 119 131-249 7-125 (148)
118 2iuy_A Avigt4, glycosyltransfe 99.6 6E-14 2E-18 149.2 22.1 291 311-659 30-338 (342)
119 2yhc_A BAMD, UPF0169 lipoprote 99.6 5.8E-14 2E-18 139.8 20.4 180 78-274 5-209 (225)
120 3rjv_A Putative SEL1 repeat pr 99.6 5.1E-14 1.7E-18 139.0 19.4 177 53-244 3-199 (212)
121 1xi4_A Clathrin heavy chain; a 99.6 1.9E-13 6.4E-18 161.8 26.9 238 2-278 1105-1342(1630)
122 1p5q_A FKBP52, FK506-binding p 99.6 3.7E-16 1.3E-20 166.0 3.4 184 15-207 78-293 (336)
123 2c2l_A CHIP, carboxy terminus 99.6 7.7E-15 2.6E-19 151.7 13.2 198 33-242 1-199 (281)
124 2vgx_A Chaperone SYCD; alterna 99.6 4.6E-15 1.6E-19 137.6 9.9 121 96-216 6-126 (148)
125 2fo7_A Synthetic consensus TPR 99.6 1.7E-13 5.8E-18 122.6 18.7 133 79-211 3-135 (136)
126 3fro_A GLGA glycogen synthase; 99.6 1.9E-14 6.7E-19 158.1 15.1 176 466-658 248-432 (439)
127 3c48_A Predicted glycosyltrans 99.6 3.4E-14 1.2E-18 156.4 16.6 185 465-660 238-429 (438)
128 3q7a_A Farnesyltransferase alp 99.5 3.9E-13 1.3E-17 140.8 23.0 234 36-275 54-328 (349)
129 2c2l_A CHIP, carboxy terminus 99.5 1.4E-14 4.9E-19 149.6 12.0 195 2-208 4-199 (281)
130 2qfc_A PLCR protein; TPR, HTH, 99.5 2.9E-13 9.9E-18 140.5 21.8 156 88-243 86-267 (293)
131 2xcb_A PCRH, regulatory protei 99.5 3E-14 1E-18 130.8 12.7 119 132-250 5-123 (142)
132 1b89_A Protein (clathrin heavy 99.5 1.3E-14 4.5E-19 155.4 11.6 219 2-256 32-250 (449)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2.8E-13 9.4E-18 132.9 19.8 133 113-248 8-156 (213)
134 2xcb_A PCRH, regulatory protei 99.5 2.1E-14 7.3E-19 131.8 10.8 127 98-224 5-131 (142)
135 4gcn_A Protein STI-1; structur 99.5 1.1E-13 3.8E-18 124.5 14.3 112 2-114 8-119 (127)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2.1E-13 7.1E-18 133.8 17.4 152 78-244 7-174 (213)
137 1dce_A Protein (RAB geranylger 99.5 6E-14 2.1E-18 159.0 14.7 199 48-246 40-271 (567)
138 1a17_A Serine/threonine protei 99.5 5.6E-13 1.9E-17 124.6 18.9 130 112-241 14-145 (166)
139 2qfc_A PLCR protein; TPR, HTH, 99.5 7.4E-13 2.5E-17 137.4 21.7 167 108-274 72-262 (293)
140 3upv_A Heat shock protein STI1 99.5 2.8E-13 9.4E-18 121.2 15.8 112 112-223 5-122 (126)
141 3u3w_A Transcriptional activat 99.5 6E-13 2E-17 138.1 19.8 154 90-243 88-267 (293)
142 2e2e_A Formate-dependent nitri 99.5 1.6E-13 5.5E-18 130.7 13.7 124 124-247 23-149 (177)
143 2e2e_A Formate-dependent nitri 99.5 1.8E-13 6E-18 130.4 13.9 131 86-216 19-152 (177)
144 1a17_A Serine/threonine protei 99.5 1.3E-12 4.6E-17 122.0 19.5 136 73-208 9-146 (166)
145 3u3w_A Transcriptional activat 99.5 4.3E-13 1.5E-17 139.2 17.7 96 113-208 157-266 (293)
146 2fbn_A 70 kDa peptidylprolyl i 99.5 6.2E-14 2.1E-18 136.5 9.8 151 90-240 17-184 (198)
147 2iw1_A Lipopolysaccharide core 99.5 3.9E-14 1.3E-18 152.3 9.2 173 465-655 191-370 (374)
148 3upv_A Heat shock protein STI1 99.5 5.5E-13 1.9E-17 119.3 15.2 110 143-252 2-117 (126)
149 2lni_A Stress-induced-phosphop 99.5 5.8E-13 2E-17 119.4 15.2 121 108-228 13-133 (133)
150 3sz7_A HSC70 cochaperone (SGT) 99.5 5.4E-13 1.8E-17 125.5 15.4 115 142-256 8-122 (164)
151 2vyi_A SGTA protein; chaperone 99.5 7E-13 2.4E-17 118.1 14.6 121 109-229 10-130 (131)
152 1dce_A Protein (RAB geranylger 99.5 2.9E-12 1E-16 145.1 22.4 166 91-256 43-235 (567)
153 3sz7_A HSC70 cochaperone (SGT) 99.5 8.1E-13 2.8E-17 124.3 14.8 116 108-223 8-123 (164)
154 1xi4_A Clathrin heavy chain; a 99.5 1.1E-11 3.8E-16 146.9 27.4 193 8-239 1055-1247(1630)
155 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 6.1E-14 2.1E-18 155.4 7.6 152 89-240 246-413 (457)
156 1na0_A Designed protein CTPR3; 99.4 5.8E-12 2E-16 111.0 18.3 117 111-227 9-125 (125)
157 4gcn_A Protein STI-1; structur 99.4 1.4E-12 4.6E-17 117.3 13.6 101 145-245 8-115 (127)
158 3s28_A Sucrose synthase 1; gly 99.4 1.6E-12 5.6E-17 151.1 17.2 187 467-662 569-777 (816)
159 3qhp_A Type 1 capsular polysac 99.4 9.3E-13 3.2E-17 124.2 12.5 158 471-647 3-165 (166)
160 1b89_A Protein (clathrin heavy 99.4 3.1E-13 1.1E-17 144.8 10.1 235 3-270 62-303 (449)
161 2vyi_A SGTA protein; chaperone 99.4 6.7E-12 2.3E-16 111.6 17.4 120 76-195 11-130 (131)
162 3q49_B STIP1 homology and U bo 99.4 2.6E-12 9E-17 116.2 14.8 104 108-211 6-109 (137)
163 2bfw_A GLGA glycogen synthase; 99.4 1.3E-12 4.5E-17 127.2 13.5 155 466-635 33-197 (200)
164 2fbn_A 70 kDa peptidylprolyl i 99.4 3.7E-13 1.3E-17 130.9 9.4 168 7-199 9-176 (198)
165 1hxi_A PEX5, peroxisome target 99.4 2E-12 6.9E-17 115.1 13.1 101 147-247 19-119 (121)
166 3gw4_A Uncharacterized protein 99.4 2.8E-12 9.6E-17 124.3 15.2 157 89-245 4-179 (203)
167 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 3.2E-13 1.1E-17 149.6 9.0 160 15-200 247-406 (457)
168 2lni_A Stress-induced-phosphop 99.4 4.1E-12 1.4E-16 113.7 14.5 118 77-194 16-133 (133)
169 2hr2_A Hypothetical protein; a 99.4 1.7E-12 5.9E-17 119.5 12.0 105 147-251 13-140 (159)
170 3gw4_A Uncharacterized protein 99.4 5.5E-12 1.9E-16 122.2 16.1 162 12-174 2-176 (203)
171 4b4t_Q 26S proteasome regulato 99.4 1E-11 3.4E-16 135.9 19.9 206 2-208 4-245 (434)
172 3mv2_B Coatomer subunit epsilo 99.4 1.4E-11 4.7E-16 126.6 19.2 225 10-249 21-289 (310)
173 3q49_B STIP1 homology and U bo 99.4 8.1E-12 2.8E-16 112.9 15.7 107 139-245 3-109 (137)
174 1elw_A TPR1-domain of HOP; HOP 99.4 1.2E-11 4.1E-16 107.9 16.2 109 113-221 6-114 (118)
175 2f9f_A First mannosyl transfer 99.4 6E-13 2E-17 127.2 7.9 150 464-629 17-173 (177)
176 1hxi_A PEX5, peroxisome target 99.4 4.1E-12 1.4E-16 113.1 12.7 101 113-213 19-119 (121)
177 3rkv_A Putative peptidylprolyl 99.4 3.9E-12 1.3E-16 119.3 13.0 110 113-222 13-141 (162)
178 1f0k_A MURG, UDP-N-acetylgluco 99.4 6.8E-12 2.3E-16 134.3 16.4 318 299-660 7-361 (364)
179 2dba_A Smooth muscle cell asso 99.4 1.6E-11 5.5E-16 112.2 16.2 115 108-222 25-142 (148)
180 2hr2_A Hypothetical protein; a 99.4 2.3E-12 7.8E-17 118.7 10.2 103 114-216 14-139 (159)
181 1wao_1 Serine/threonine protei 99.4 2.5E-13 8.7E-18 151.1 4.5 136 113-248 8-156 (477)
182 1na0_A Designed protein CTPR3; 99.3 3.9E-11 1.3E-15 105.6 17.8 117 77-193 9-125 (125)
183 1wao_1 Serine/threonine protei 99.3 1.5E-12 5.1E-17 144.9 10.3 136 77-212 6-154 (477)
184 1elw_A TPR1-domain of HOP; HOP 99.3 3.4E-11 1.2E-15 104.9 17.0 109 144-252 3-111 (118)
185 3rkv_A Putative peptidylprolyl 99.3 6.2E-12 2.1E-16 117.9 12.5 120 75-194 9-147 (162)
186 2kck_A TPR repeat; tetratricop 99.3 7.2E-12 2.5E-16 108.2 11.5 106 141-246 2-110 (112)
187 2qzs_A Glycogen synthase; glyc 99.3 1.4E-11 4.6E-16 137.6 16.3 170 469-658 291-478 (485)
188 4e6h_A MRNA 3'-END-processing 99.3 9.7E-11 3.3E-15 134.5 23.6 224 19-249 326-577 (679)
189 2xev_A YBGF; tetratricopeptide 99.3 3.6E-11 1.2E-15 107.4 15.7 100 149-248 6-111 (129)
190 2dba_A Smooth muscle cell asso 99.3 4.9E-11 1.7E-15 108.9 16.8 113 140-252 23-138 (148)
191 2if4_A ATFKBP42; FKBP-like, al 99.3 1E-12 3.5E-17 139.4 6.2 158 74-248 176-334 (338)
192 4b4t_Q 26S proteasome regulato 99.3 3.7E-11 1.3E-15 131.4 18.7 207 36-242 4-245 (434)
193 1rzu_A Glycogen synthase 1; gl 99.3 1.8E-11 6.2E-16 136.6 16.3 168 470-657 291-476 (485)
194 1elr_A TPR2A-domain of HOP; HO 99.3 1.9E-11 6.7E-16 108.7 12.6 112 112-224 5-123 (131)
195 2xev_A YBGF; tetratricopeptide 99.3 8.1E-11 2.8E-15 105.0 16.5 119 1-123 1-122 (129)
196 3mv2_B Coatomer subunit epsilo 99.3 7.9E-11 2.7E-15 121.0 17.9 184 21-216 85-290 (310)
197 2if4_A ATFKBP42; FKBP-like, al 99.3 6.9E-12 2.4E-16 133.1 10.3 102 112-213 231-333 (338)
198 2kck_A TPR repeat; tetratricop 99.3 1.7E-11 5.7E-16 105.9 11.0 106 107-212 2-110 (112)
199 1ihg_A Cyclophilin 40; ppiase 99.3 3E-11 1E-15 129.6 15.2 121 114-234 226-362 (370)
200 1ihg_A Cyclophilin 40; ppiase 99.3 4.4E-11 1.5E-15 128.4 16.3 133 69-201 215-363 (370)
201 1elr_A TPR2A-domain of HOP; HO 99.3 3.6E-11 1.2E-15 106.9 12.8 122 2-124 4-125 (131)
202 3ro3_A PINS homolog, G-protein 99.3 3.1E-11 1.1E-15 111.4 12.5 98 147-244 51-160 (164)
203 3ro3_A PINS homolog, G-protein 99.2 4.6E-11 1.6E-15 110.3 12.9 103 36-139 9-117 (164)
204 1zu2_A Mitochondrial import re 99.2 2.1E-11 7.2E-16 112.0 10.1 93 160-252 17-130 (158)
205 2xci_A KDO-transferase, 3-deox 99.2 1.8E-11 6.2E-16 131.6 10.4 246 366-635 100-361 (374)
206 3k9i_A BH0479 protein; putativ 99.2 1.7E-11 5.7E-16 108.2 7.8 90 159-248 4-96 (117)
207 1zu2_A Mitochondrial import re 99.2 3.6E-11 1.2E-15 110.4 9.8 101 89-213 14-125 (158)
208 3k9i_A BH0479 protein; putativ 99.2 2.9E-11 1E-15 106.6 8.9 95 123-217 2-99 (117)
209 3vue_A GBSS-I, granule-bound s 99.2 2.6E-11 8.8E-16 136.3 10.6 163 467-657 324-512 (536)
210 4e6h_A MRNA 3'-END-processing 99.1 4.1E-09 1.4E-13 121.0 22.1 214 2-215 343-577 (679)
211 3otg_A CALG1; calicheamicin, T 99.1 2.5E-09 8.7E-14 116.3 18.5 167 467-655 240-409 (412)
212 1uqt_A Alpha, alpha-trehalose- 99.1 1.1E-09 3.8E-14 120.9 15.6 175 469-656 254-454 (482)
213 1vgv_A UDP-N-acetylglucosamine 99.0 5.8E-10 2E-14 120.1 11.7 169 468-657 204-377 (384)
214 3beo_A UDP-N-acetylglucosamine 99.0 8.7E-10 3E-14 118.3 10.8 167 467-653 203-373 (375)
215 2x0d_A WSAF; GT4 family, trans 99.0 1.7E-10 5.7E-15 125.6 4.9 157 473-656 244-409 (413)
216 2l6j_A TPR repeat-containing p 99.0 2.9E-10 1E-14 98.3 5.5 93 145-237 4-102 (111)
217 2kat_A Uncharacterized protein 99.0 4.5E-09 1.5E-13 91.9 12.8 80 130-209 4-83 (115)
218 1na3_A Designed protein CTPR2; 98.9 6.7E-09 2.3E-13 86.0 12.0 82 145-226 9-90 (91)
219 3tsa_A SPNG, NDP-rhamnosyltran 98.9 3.5E-08 1.2E-12 106.5 20.8 165 467-654 216-388 (391)
220 2l6j_A TPR repeat-containing p 98.9 6.6E-10 2.2E-14 96.0 5.7 94 111-204 4-103 (111)
221 2kat_A Uncharacterized protein 98.9 7.1E-09 2.4E-13 90.6 12.2 95 95-189 3-99 (115)
222 1na3_A Designed protein CTPR2; 98.9 1.1E-08 3.6E-13 84.8 11.8 84 110-193 8-91 (91)
223 2hy7_A Glucuronosyltransferase 98.9 2.3E-09 7.8E-14 116.6 9.4 145 469-655 221-378 (406)
224 3n71_A Histone lysine methyltr 98.9 5.5E-09 1.9E-13 115.5 12.2 126 117-242 315-464 (490)
225 1klx_A Cysteine rich protein B 98.9 4.6E-08 1.6E-12 88.8 15.5 109 92-208 10-126 (138)
226 3t5t_A Putative glycosyltransf 98.9 2.7E-08 9.4E-13 108.7 15.8 174 469-659 280-476 (496)
227 3n71_A Histone lysine methyltr 98.8 1.2E-08 4E-13 112.9 12.8 129 80-208 312-464 (490)
228 3rsc_A CALG2; TDP, enediyne, s 98.8 5.3E-07 1.8E-11 98.0 25.3 167 466-655 244-414 (415)
229 3ia7_A CALG4; glycosysltransfe 98.8 2.9E-07 9.9E-12 99.4 23.0 169 466-655 228-399 (402)
230 3u64_A Protein TP_0956; tetrat 98.8 1E-07 3.5E-12 95.4 17.5 182 55-245 51-272 (301)
231 2kc7_A BFR218_protein; tetratr 98.8 6.7E-09 2.3E-13 87.9 7.8 91 149-247 4-95 (99)
232 4fzr_A SSFS6; structural genom 98.8 1.8E-08 6E-13 109.2 13.0 162 467-651 225-397 (398)
233 1v4v_A UDP-N-acetylglucosamine 98.8 3.9E-08 1.3E-12 105.5 15.4 144 468-628 197-343 (376)
234 1klx_A Cysteine rich protein B 98.8 6.4E-08 2.2E-12 87.9 14.4 111 125-243 9-127 (138)
235 3ma5_A Tetratricopeptide repea 98.8 1.2E-08 4.2E-13 86.9 8.7 71 175-245 3-73 (100)
236 3ma5_A Tetratricopeptide repea 98.8 3.7E-08 1.3E-12 83.8 10.3 69 141-209 3-71 (100)
237 2kc7_A BFR218_protein; tetratr 98.7 1.7E-08 5.7E-13 85.4 7.3 89 115-211 4-93 (99)
238 2uy1_A Cleavage stimulation fa 98.7 3.7E-06 1.3E-10 93.5 28.2 239 3-249 15-356 (493)
239 3oti_A CALG3; calicheamicin, T 98.7 3.7E-07 1.3E-11 98.7 19.2 160 467-653 230-396 (398)
240 3ly7_A Transcriptional activat 98.7 9.1E-07 3.1E-11 92.4 19.5 151 27-178 185-343 (372)
241 3s2u_A UDP-N-acetylglucosamine 98.7 3E-07 1E-11 98.2 16.5 128 516-655 224-357 (365)
242 3ly7_A Transcriptional activat 98.7 4.6E-07 1.6E-11 94.6 17.2 131 92-247 214-344 (372)
243 3u64_A Protein TP_0956; tetrat 98.6 5.4E-07 1.8E-11 90.3 15.2 85 127-211 179-272 (301)
244 2uy1_A Cleavage stimulation fa 98.6 4.4E-06 1.5E-10 92.8 24.5 204 18-241 195-412 (493)
245 3nb0_A Glycogen [starch] synth 98.5 1.6E-07 5.5E-12 104.7 10.2 137 517-660 474-637 (725)
246 2iyf_A OLED, oleandomycin glyc 98.5 2.3E-07 7.8E-12 101.4 11.3 169 467-657 230-402 (430)
247 2o6l_A UDP-glucuronosyltransfe 98.5 1.2E-06 4.2E-11 82.4 14.8 138 468-626 20-161 (170)
248 3dzc_A UDP-N-acetylglucosamine 98.5 9.2E-07 3.1E-11 95.5 14.9 146 468-629 229-377 (396)
249 3ot5_A UDP-N-acetylglucosamine 98.4 7.8E-07 2.7E-11 96.2 11.9 146 467-628 222-370 (403)
250 1pc2_A Mitochondria fission pr 98.4 2E-06 6.7E-11 78.0 11.6 91 161-251 14-109 (152)
251 3bee_A Putative YFRE protein; 98.4 1.9E-06 6.6E-11 72.0 10.2 72 175-246 2-76 (93)
252 2p6p_A Glycosyl transferase; X 98.4 6.7E-06 2.3E-10 88.2 16.7 162 468-653 209-378 (384)
253 3qwp_A SET and MYND domain-con 98.3 1.6E-06 5.3E-11 94.4 10.7 86 157-242 299-400 (429)
254 1pc2_A Mitochondria fission pr 98.3 5.8E-06 2E-10 74.9 12.3 91 128-218 15-110 (152)
255 3qww_A SET and MYND domain-con 98.3 1.9E-06 6.4E-11 93.7 10.8 91 159-249 312-423 (433)
256 4amg_A Snogd; transferase, pol 98.3 1E-05 3.4E-10 87.2 16.5 163 466-652 234-398 (400)
257 3qww_A SET and MYND domain-con 98.3 2E-06 6.8E-11 93.4 10.3 94 123-216 310-424 (433)
258 3bee_A Putative YFRE protein; 98.3 4.4E-06 1.5E-10 69.8 9.9 70 142-211 3-75 (93)
259 2v5f_A Prolyl 4-hydroxylase su 98.2 9.9E-06 3.4E-10 69.2 11.9 74 180-253 6-86 (104)
260 2iya_A OLEI, oleandomycin glyc 98.2 2.4E-05 8E-10 85.2 17.0 165 467-654 253-421 (424)
261 2v5f_A Prolyl 4-hydroxylase su 98.2 1.3E-05 4.6E-10 68.4 11.8 76 145-220 5-87 (104)
262 3qwp_A SET and MYND domain-con 98.2 4.9E-06 1.7E-10 90.5 11.2 98 43-140 294-400 (429)
263 4g26_A Pentatricopeptide repea 98.1 0.00038 1.3E-08 77.2 25.4 159 84-242 33-204 (501)
264 4hwg_A UDP-N-acetylglucosamine 98.1 2.1E-06 7E-11 92.1 5.8 168 465-653 199-374 (385)
265 2yjn_A ERYCIII, glycosyltransf 98.0 2.4E-05 8.1E-10 85.7 13.1 160 468-654 266-435 (441)
266 1iir_A Glycosyltransferase GTF 98.0 5.3E-05 1.8E-09 82.2 15.1 157 470-652 239-398 (415)
267 4g26_A Pentatricopeptide repea 98.0 0.0013 4.4E-08 72.9 25.8 184 38-223 28-220 (501)
268 3rhz_A GTF3, nucleotide sugar 97.9 2.7E-05 9.2E-10 81.7 10.4 133 468-633 176-316 (339)
269 1rrv_A Glycosyltransferase GTF 97.8 0.00014 4.7E-09 78.8 13.4 137 470-628 238-378 (416)
270 2pq6_A UDP-glucuronosyl/UDP-gl 97.8 0.00039 1.3E-08 76.9 16.6 152 468-632 294-451 (482)
271 3h4t_A Glycosyltransferase GTF 97.8 0.00023 7.9E-09 76.8 14.5 158 468-653 220-381 (404)
272 2c1x_A UDP-glucose flavonoid 3 97.8 0.00019 6.4E-09 78.8 13.8 152 467-632 269-424 (456)
273 3hbf_A Flavonoid 3-O-glucosylt 97.7 0.00033 1.1E-08 76.4 15.3 139 467-620 271-415 (454)
274 1nzn_A CGI-135 protein, fissio 97.7 0.00022 7.4E-09 62.2 10.8 92 160-251 16-112 (126)
275 1nzn_A CGI-135 protein, fissio 97.6 0.00065 2.2E-08 59.2 11.8 89 92-180 16-109 (126)
276 2acv_A Triterpene UDP-glucosyl 97.5 0.0012 4.3E-08 72.3 15.9 146 468-625 275-432 (463)
277 4h7y_A Dual specificity protei 97.4 0.0023 7.8E-08 56.9 12.9 108 141-249 9-130 (161)
278 4h7y_A Dual specificity protei 97.4 0.0016 5.4E-08 58.0 11.6 110 106-216 8-131 (161)
279 2vch_A Hydroquinone glucosyltr 97.3 0.00097 3.3E-08 73.6 11.9 137 468-618 267-428 (480)
280 3ffl_A Anaphase-promoting comp 97.2 0.003 1E-07 57.5 11.3 132 113-259 22-165 (167)
281 3ffl_A Anaphase-promoting comp 97.2 0.0021 7.3E-08 58.5 10.2 134 78-224 21-166 (167)
282 1y8m_A FIS1; mitochondria, unk 96.9 0.017 5.7E-07 51.1 13.5 76 176-251 36-115 (144)
283 3o48_A Mitochondria fission 1 96.7 0.015 5E-07 50.8 11.2 75 177-251 38-116 (134)
284 1y8m_A FIS1; mitochondria, unk 96.5 0.066 2.3E-06 47.3 14.0 76 143-218 37-116 (144)
285 1psw_A ADP-heptose LPS heptosy 96.4 0.019 6.4E-07 60.1 12.1 99 479-589 193-296 (348)
286 3o48_A Mitochondria fission 1 96.3 0.037 1.3E-06 48.3 11.0 73 145-217 40-116 (134)
287 3txn_A 26S proteasome regulato 96.2 0.35 1.2E-05 51.0 20.5 171 37-209 20-211 (394)
288 3mkq_A Coatomer beta'-subunit; 96.1 0.35 1.2E-05 56.3 22.2 99 11-137 608-707 (814)
289 3txn_A 26S proteasome regulato 95.7 0.7 2.4E-05 48.8 20.1 191 3-194 20-235 (394)
290 4gns_B Protein CSD3, chitin bi 95.7 0.074 2.5E-06 61.0 13.1 112 127-239 265-397 (754)
291 3kae_A CDC27, possible protein 95.6 1.2 4.3E-05 40.1 18.2 89 84-177 40-146 (242)
292 3tov_A Glycosyl transferase fa 95.4 0.02 6.7E-07 60.1 6.9 98 480-589 198-296 (349)
293 4gns_B Protein CSD3, chitin bi 95.2 0.18 6.3E-06 57.7 14.2 58 113-170 339-396 (754)
294 3mkq_A Coatomer beta'-subunit; 95.1 0.64 2.2E-05 54.1 19.4 155 44-239 607-762 (814)
295 1qsa_A Protein (soluble lytic 95.0 2.4 8.2E-05 47.6 22.5 223 14-241 84-347 (618)
296 2gt1_A Lipopolysaccharide hept 94.9 0.059 2E-06 55.7 8.7 89 488-589 197-288 (326)
297 1zbp_A Hypothetical protein VP 94.3 0.65 2.2E-05 45.7 13.7 121 121-248 7-135 (273)
298 3mkq_B Coatomer subunit alpha; 94.3 0.79 2.7E-05 42.3 13.5 101 121-239 15-115 (177)
299 3kae_A CDC27, possible protein 94.1 3.2 0.00011 37.5 20.4 96 6-112 37-149 (242)
300 2ff4_A Probable regulatory pro 94.1 0.68 2.3E-05 49.0 14.7 109 120-241 124-233 (388)
301 1zbp_A Hypothetical protein VP 94.0 0.69 2.4E-05 45.6 13.2 59 12-70 7-65 (273)
302 3hbm_A UDP-sugar hydrolase; PS 94.0 0.13 4.3E-06 52.0 8.3 85 501-600 186-270 (282)
303 2jzc_A UDP-N-acetylglucosamine 93.7 0.14 4.9E-06 49.5 7.6 63 531-599 115-181 (224)
304 1ya0_A SMG-7 transcript varian 93.5 0.5 1.7E-05 51.6 12.4 77 114-190 155-231 (497)
305 3mkq_B Coatomer subunit alpha; 93.4 1.7 5.8E-05 40.0 13.9 98 89-204 17-114 (177)
306 4b4t_R RPN7, 26S proteasome re 92.7 0.51 1.7E-05 50.7 11.0 100 37-140 132-237 (429)
307 3spa_A Mtrpol, DNA-directed RN 92.7 1.2 4.1E-05 52.3 14.4 98 112-209 128-231 (1134)
308 4b4t_P 26S proteasome regulato 92.7 13 0.00043 39.9 23.6 188 15-207 29-246 (445)
309 4b4t_S RPN3, 26S proteasome re 92.6 0.22 7.7E-06 54.0 8.0 128 119-248 144-305 (523)
310 1ya0_A SMG-7 transcript varian 92.6 0.54 1.8E-05 51.3 11.0 79 147-225 154-232 (497)
311 2ff4_A Probable regulatory pro 92.5 1.9 6.6E-05 45.4 15.1 113 42-174 121-234 (388)
312 4b4t_S RPN3, 26S proteasome re 92.3 0.83 2.8E-05 49.6 11.8 142 88-231 147-329 (523)
313 4fhn_B Nucleoporin NUP120; pro 92.1 2.6 8.9E-05 51.4 17.4 160 9-194 819-986 (1139)
314 3spa_A Mtrpol, DNA-directed RN 91.8 1.8 6.1E-05 50.9 14.4 98 78-175 128-231 (1134)
315 4b4t_P 26S proteasome regulato 91.2 1.8 6.1E-05 46.7 13.3 99 4-105 139-246 (445)
316 4ady_A RPN2, 26S proteasome re 90.6 5.9 0.0002 46.3 17.3 188 14-207 386-588 (963)
317 4fhn_B Nucleoporin NUP120; pro 90.4 3.9 0.00013 49.8 16.7 101 105-205 836-964 (1139)
318 4b4t_R RPN7, 26S proteasome re 89.3 1.4 4.7E-05 47.4 10.3 97 146-242 132-237 (429)
319 4ady_A RPN2, 26S proteasome re 89.3 8.3 0.00028 45.1 17.1 251 4-266 415-680 (963)
320 2gj4_A Glycogen phosphorylase, 88.7 2.4 8.4E-05 48.5 12.0 113 468-582 548-684 (824)
321 2wpv_A GET4, UPF0363 protein Y 87.9 24 0.00084 35.6 18.7 25 110-134 133-157 (312)
322 3lpz_A GET4 (YOR164C homolog); 87.3 28 0.00095 35.5 25.8 27 108-134 133-159 (336)
323 1qsa_A Protein (soluble lytic 84.0 59 0.002 36.3 26.7 127 43-173 221-347 (618)
324 2c4m_A Glycogen phosphorylase; 83.3 6.9 0.00023 44.7 12.0 109 468-578 514-645 (796)
325 1l5w_A Maltodextrin phosphoryl 82.0 9 0.00031 43.7 12.2 109 468-578 524-655 (796)
326 3lpz_A GET4 (YOR164C homolog); 67.7 1.1E+02 0.0037 31.0 23.7 27 176-202 133-159 (336)
327 2qx5_A Nucleoporin NIC96; mRNA 65.6 81 0.0028 35.4 14.6 28 218-246 541-570 (661)
328 2wpv_A GET4, UPF0363 protein Y 65.1 1.2E+02 0.004 30.5 23.6 82 143-241 132-216 (312)
329 1wy6_A Hypothetical protein ST 64.1 25 0.00084 30.8 7.6 53 189-241 101-153 (172)
330 2l2q_A PTS system, cellobiose- 61.8 14 0.00047 30.9 5.8 76 500-580 5-83 (109)
331 2f62_A Nucleoside 2-deoxyribos 61.1 49 0.0017 29.7 9.7 78 501-582 11-107 (161)
332 4gq2_M Nucleoporin NUP120; bet 60.1 58 0.002 38.5 12.9 94 151-248 816-933 (950)
333 3nbm_A PTS system, lactose-spe 57.7 4.4 0.00015 34.0 1.9 81 499-584 6-89 (108)
334 3lvg_A Clathrin heavy chain 1; 55.6 0.00062 2.1E-08 72.3 -26.9 214 2-251 54-267 (624)
335 3ubw_A 14-3-3E, 14-3-3 protein 54.7 1.6E+02 0.0054 28.6 15.0 46 162-207 173-227 (261)
336 4gq2_M Nucleoporin NUP120; bet 53.5 75 0.0026 37.5 12.4 109 7-140 815-926 (950)
337 3esl_A Checkpoint serine/threo 51.7 1.4E+02 0.0049 27.7 11.3 63 181-244 82-146 (202)
338 1e2b_A Enzyme IIB-cellobiose; 50.9 38 0.0013 28.0 6.7 74 502-580 7-80 (106)
339 2br9_A 14-3-3E, 14-3-3 protein 47.8 1.9E+02 0.0066 27.5 13.6 43 5-47 8-51 (234)
340 3t5v_B Nuclear mRNA export pro 46.7 28 0.00094 37.2 6.4 64 183-246 180-254 (455)
341 3uzd_A 14-3-3 protein gamma; s 45.0 2.2E+02 0.0075 27.4 13.7 43 5-47 7-50 (248)
342 2pln_A HP1043, response regula 44.2 1.4E+02 0.0047 24.8 10.4 105 499-616 18-130 (137)
343 3td3_A Outer membrane protein 43.9 44 0.0015 28.3 6.2 54 484-537 30-94 (123)
344 3j20_B 30S ribosomal protein S 43.2 48 0.0016 31.0 6.7 88 491-582 56-143 (202)
345 2ijq_A Hypothetical protein; s 42.5 1.4E+02 0.0047 26.7 9.4 68 39-106 35-104 (161)
346 3sho_A Transcriptional regulat 42.0 1.1E+02 0.0039 27.5 9.4 96 481-582 23-123 (187)
347 2npm_A 14-3-3 domain containin 41.6 2.5E+02 0.0087 27.2 15.0 46 37-82 29-78 (260)
348 2hqs_H Peptidoglycan-associate 40.4 51 0.0017 27.7 6.0 54 484-537 22-85 (118)
349 2ijq_A Hypothetical protein; s 40.3 1E+02 0.0035 27.5 8.2 61 5-65 35-104 (161)
350 1o9d_A 14-3-3-like protein C; 40.3 2.7E+02 0.0091 27.0 15.1 43 5-47 11-56 (260)
351 2w2u_A Hypothetical P60 katani 39.8 48 0.0016 26.0 5.3 17 190-206 30-46 (83)
352 3en0_A Cyanophycinase; serine 39.1 61 0.0021 32.3 7.2 92 466-565 24-121 (291)
353 2aiz_P Outer membrane protein 38.8 48 0.0017 28.6 5.7 58 480-537 39-109 (134)
354 3esl_A Checkpoint serine/threo 38.6 2.4E+02 0.0083 26.1 12.7 49 161-209 95-145 (202)
355 3t5x_A PCI domain-containing p 38.4 48 0.0016 31.0 6.1 35 36-70 14-48 (203)
356 3mm4_A Histidine kinase homolo 38.2 1.6E+02 0.0056 26.9 10.0 108 500-617 62-194 (206)
357 3lxu_X Tripeptidyl-peptidase 2 38.1 4.7E+02 0.016 31.8 15.6 45 3-47 1108-1152(1354)
358 2v6y_A AAA family ATPase, P60 38.0 53 0.0018 25.8 5.3 16 190-205 22-37 (83)
359 2kgw_A Outer membrane protein 37.1 48 0.0016 28.3 5.4 58 480-537 33-103 (129)
360 3ax2_A Mitochondrial import re 36.6 80 0.0027 24.1 5.8 25 185-209 23-47 (73)
361 3goe_A DNA repair protein RAD6 36.4 32 0.0011 26.6 3.5 56 497-556 19-82 (82)
362 1tvm_A PTS system, galactitol- 35.8 59 0.002 27.1 5.6 65 501-578 23-90 (113)
363 2cwy_A Hypothetical protein TT 35.0 1.5E+02 0.0052 23.7 7.7 62 41-105 6-67 (94)
364 1o9d_A 14-3-3-like protein C; 34.5 3.3E+02 0.011 26.4 14.2 46 37-82 9-57 (260)
365 3oon_A Outer membrane protein 34.5 63 0.0021 27.2 5.7 55 484-538 33-98 (123)
366 4erh_A Outer membrane protein 34.3 43 0.0015 29.4 4.8 58 480-537 31-103 (148)
367 2crb_A Nuclear receptor bindin 34.3 54 0.0019 26.2 4.6 24 5-28 18-41 (97)
368 3ubw_A 14-3-3E, 14-3-3 protein 34.2 3.3E+02 0.011 26.3 17.1 48 35-82 30-78 (261)
369 3ax2_A Mitochondrial import re 34.2 90 0.0031 23.8 5.7 29 82-110 22-50 (73)
370 3re2_A Predicted protein; meni 34.0 2E+02 0.007 29.2 9.7 64 178-241 254-324 (472)
371 1hym_A CMTI-V, hydrolyzed cucu 33.4 14 0.00049 25.3 1.0 27 356-382 8-34 (45)
372 2crb_A Nuclear receptor bindin 33.3 57 0.0019 26.1 4.5 33 72-104 10-42 (97)
373 1vi6_A 30S ribosomal protein S 33.2 43 0.0015 31.5 4.6 92 487-582 56-147 (208)
374 3t5v_B Nuclear mRNA export pro 32.8 1.1E+02 0.0038 32.5 8.4 63 7-69 181-254 (455)
375 3re2_A Predicted protein; meni 32.2 1.9E+02 0.0064 29.5 9.1 46 177-222 294-345 (472)
376 2k1s_A Inner membrane lipoprot 31.7 72 0.0024 28.0 5.8 53 485-537 51-113 (149)
377 1om2_A Protein (mitochondrial 31.5 1.1E+02 0.0037 24.7 6.1 29 81-109 24-52 (95)
378 1e5p_A Aphrodisin; lipocalin, 31.1 54 0.0018 28.6 4.9 38 500-537 107-145 (151)
379 3u5c_A 40S ribosomal protein S 30.7 62 0.0021 31.3 5.4 79 500-582 71-149 (252)
380 3t5x_A PCI domain-containing p 30.7 1.2E+02 0.0042 28.2 7.5 33 3-35 15-47 (203)
381 1s2d_A Purine trans deoxyribos 30.5 58 0.002 29.4 5.0 36 545-580 76-116 (167)
382 3l7i_A Teichoic acid biosynthe 29.5 2.7E+02 0.0093 31.4 11.8 119 529-658 597-720 (729)
383 2ixa_A Alpha-N-acetylgalactosa 29.5 1.1E+02 0.0038 32.3 8.0 83 490-578 35-120 (444)
384 3cyp_B Chemotaxis protein MOTB 29.2 82 0.0028 27.2 5.6 53 485-537 21-88 (138)
385 1g60_A Adenine-specific methyl 29.2 21 0.00071 35.0 1.9 29 549-578 211-239 (260)
386 3ldt_A Outer membrane protein, 29.1 98 0.0034 27.8 6.3 53 485-537 71-133 (169)
387 3p9z_A Uroporphyrinogen III co 28.8 27 0.00091 33.4 2.6 98 515-619 122-227 (229)
388 3v5n_A Oxidoreductase; structu 28.6 74 0.0025 33.4 6.2 78 491-578 56-139 (417)
389 3u84_A Menin; MLL, JUND, ledgf 28.0 2.8E+02 0.0094 28.9 9.7 44 198-241 298-346 (550)
390 2hlv_A Odorant-binding protein 27.8 73 0.0025 28.1 5.2 38 500-537 114-152 (160)
391 4had_A Probable oxidoreductase 27.7 68 0.0023 32.6 5.7 76 490-578 39-115 (350)
392 1bj7_A D 2; allergen, lipocali 27.6 63 0.0022 28.4 4.7 38 500-537 112-150 (156)
393 2w2u_A Hypothetical P60 katani 26.2 2.3E+02 0.0079 22.0 7.2 16 48-63 31-46 (83)
394 4fyk_A Deoxyribonucleoside 5'- 25.9 1.2E+02 0.004 26.9 5.9 46 545-590 63-111 (152)
395 3u84_A Menin; MLL, JUND, ledgf 25.7 2.6E+02 0.009 29.0 9.1 30 178-207 317-346 (550)
396 2i2x_B MTAC, methyltransferase 25.7 2.4E+02 0.0082 27.2 8.9 104 516-628 141-253 (258)
397 1dzk_A PIG OBP, odorant-bindin 25.7 76 0.0026 27.8 4.9 38 500-537 113-151 (157)
398 3lxu_X Tripeptidyl-peptidase 2 25.6 9.8E+02 0.033 29.1 16.8 33 90-122 1120-1152(1354)
399 1wy6_A Hypothetical protein ST 25.6 3.4E+02 0.012 23.7 15.6 26 44-69 15-40 (172)
400 2fp4_B Succinyl-COA ligase [GD 25.5 1.7E+02 0.0059 30.4 8.3 47 572-619 348-394 (395)
401 3db2_A Putative NADPH-dependen 25.5 1.1E+02 0.0039 31.0 6.9 76 489-578 19-95 (354)
402 3uuw_A Putative oxidoreductase 25.4 90 0.0031 31.0 6.0 73 490-578 22-95 (308)
403 2xzm_B RPS0E; ribosome, transl 25.4 1.4E+02 0.0049 28.5 6.9 88 491-582 57-146 (241)
404 1ygp_A Yeast glycogen phosphor 25.3 2.8E+02 0.0097 31.8 10.3 110 469-580 599-740 (879)
405 2cpt_A SKD1 protein, vacuolar 24.8 1E+02 0.0035 25.9 5.2 33 161-208 15-47 (117)
406 4gq4_A Menin; tumor suppressor 24.5 3.9E+02 0.013 27.8 10.1 94 114-222 245-352 (489)
407 1wfd_A Hypothetical protein 15 24.3 2.7E+02 0.0092 22.1 8.0 63 161-238 12-81 (93)
408 3dty_A Oxidoreductase, GFO/IDH 23.8 66 0.0022 33.5 4.7 77 492-578 32-114 (398)
409 2v6x_A Vacuolar protein sortin 23.5 1.3E+02 0.0044 23.5 5.3 33 161-208 10-42 (85)
410 3ju8_A Succinylglutamic semial 23.4 2.2E+02 0.0075 30.5 8.9 90 485-579 153-247 (490)
411 2npm_A 14-3-3 domain containin 23.0 5.2E+02 0.018 25.0 16.5 56 4-59 30-90 (260)
412 1r1m_A Outer membrane protein 22.9 1E+02 0.0036 27.6 5.2 53 485-537 32-94 (164)
413 4a5x_A MITD1, MIT domain-conta 22.9 1E+02 0.0036 24.2 4.6 18 47-64 27-44 (86)
414 3iqu_A 14-3-3 protein sigma; s 22.9 5E+02 0.017 24.7 16.0 46 37-82 9-55 (236)
415 2iz6_A Molybdenum cofactor car 22.7 84 0.0029 28.6 4.5 63 550-617 107-172 (176)
416 1h6d_A Precursor form of gluco 22.6 68 0.0023 33.9 4.6 80 490-578 99-179 (433)
417 2oyy_A Hexameric cytochrome; a 22.5 1E+02 0.0035 23.2 4.0 35 597-635 5-47 (76)
418 1boo_A Protein (N-4 cytosine-s 22.4 32 0.0011 34.9 1.8 30 549-579 251-280 (323)
419 2v6y_A AAA family ATPase, P60 22.2 2.8E+02 0.0094 21.5 7.3 11 20-30 10-20 (83)
420 4f3y_A DHPR, dihydrodipicolina 22.1 53 0.0018 32.4 3.3 31 548-578 71-102 (272)
421 4b4t_O 26S proteasome regulato 21.9 4E+02 0.014 27.4 10.4 61 181-241 129-197 (393)
422 3sao_A Extracellular fatty aci 21.6 1E+02 0.0035 27.2 4.9 37 501-537 110-147 (160)
423 2rpa_A Katanin P60 ATPase-cont 21.5 83 0.0028 24.4 3.6 24 7-30 17-40 (78)
424 2br9_A 14-3-3E, 14-3-3 protein 21.3 5.3E+02 0.018 24.4 16.0 46 37-82 6-52 (234)
425 3e9m_A Oxidoreductase, GFO/IDH 21.0 1.3E+02 0.0044 30.2 6.2 76 490-578 20-96 (330)
426 1ydw_A AX110P-like protein; st 20.8 2.1E+02 0.0071 29.1 7.8 78 491-578 22-100 (362)
427 1om2_A Protein (mitochondrial 20.6 1.2E+02 0.0041 24.4 4.4 27 184-210 25-51 (95)
428 4grd_A N5-CAIR mutase, phospho 20.4 4.7E+02 0.016 23.5 12.6 90 509-600 22-117 (173)
429 3iz6_A 40S ribosomal protein S 20.4 1.4E+02 0.0046 29.7 5.7 80 498-582 75-154 (305)
430 3mz0_A Inositol 2-dehydrogenas 20.2 1.3E+02 0.0046 30.3 6.1 77 490-578 17-95 (344)
431 3uzd_A 14-3-3 protein gamma; s 20.2 5.8E+02 0.02 24.4 16.5 46 37-82 5-51 (248)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=6.5e-115 Score=1010.84 Aligned_cols=584 Identities=28% Similarity=0.416 Sum_probs=514.4
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
+.++.++|.++..+|++++|+++|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..+++++|.++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44566677777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
.+|++++|+++|+++++++|+++.++.++|.+|..+|++++|++.|+++++++|+++.++.++|.+|..+|++++|.+.|
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhHHH----HHHHHHhhhccCCcHHHHHHHHHHHHHH----hhhc-cCCCCCCCCCCCCCCccccccCCC
Q 004753 237 EQCLKIDPDSRNAGQ----NRLLAMNYINEGHDDKLFEAHRDWGKRF----MRLY-SQYTSWDNTKDPERPLVIGYVSPD 307 (732)
Q Consensus 237 ~~al~l~p~~~~a~~----~~~la~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~lrIGyvS~d 307 (732)
++++++.|+...... .......+........+ ..+.+.... .... ++.......+.++++|||||+|+|
T Consensus 169 ~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~a--ia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~d 246 (723)
T 4gyw_A 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKA--IAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246 (723)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHH--HHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESC
T ss_pred HHHHHhChhHHhhccCcccchhhhhhhhcCHHHHHH--HHHHHHHhhhhhhhcccCccccCccccccccccceeeeechh
Confidence 999998775432210 00011111111111111 112222221 1111 222223334567899999999999
Q ss_pred cccChhhhhhhHHhccccCCcEEEEEEecccc-CChhhHHHHHHHhhhCCeEEEccCC-CHHHHHHHHHhCCCcEEEeCC
Q 004753 308 YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELT 385 (732)
Q Consensus 308 ~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~Dilvdl~ 385 (732)
|++||+++++..++++||+++|||++|+.++. .+..+.+++.. .++|+++.++ ++.+++++|++|+|||||||+
T Consensus 247 f~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~ 322 (723)
T 4gyw_A 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAE----ANHFIDLSQIPCNGKAADRIHQDGIHILVNMN 322 (723)
T ss_dssp SSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHH----SSEEEEGGGCCCHHHHHHHHHHTTCSEEEESC
T ss_pred hccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHh----hccccccccCCcHHHHHHHHHhccceeEEecc
Confidence 99999999999999999999999999998753 45555555554 4789999998 689999999999999999999
Q ss_pred CCCCCCchhhhccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCcccCCccceEEcCCCccccCCCCCCC-------
Q 004753 386 GHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAG------- 458 (732)
Q Consensus 386 g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~------- 458 (732)
|||.++|+.+|++|||||||+|||||+|||+++|||+|+|.+++|++.+.+|+|||+|||++++|+.|....+
T Consensus 323 g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~~~ 402 (723)
T 4gyw_A 323 GYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAV 402 (723)
T ss_dssp SSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSCEE
T ss_pred CCCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCCchhhhcceeeeeeCCCccccCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986321000
Q ss_pred --------------------------------------------------------------------------------
Q 004753 459 -------------------------------------------------------------------------------- 458 (732)
Q Consensus 459 -------------------------------------------------------------------------------- 458 (732)
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~ 482 (723)
T 4gyw_A 403 IDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQITIN 482 (723)
T ss_dssp ECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------------------------CCCCCCCCCCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 004753 459 -----------------------------PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPF 509 (732)
Q Consensus 459 -----------------------------~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 509 (732)
..+..++||+|.|||||||+++||+|+++++|++||++||+|+|||+..+.
T Consensus 483 g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~ 562 (723)
T 4gyw_A 483 GFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA 562 (723)
T ss_dssp TEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG
T ss_pred ccccccccccccccccccccccccccccccchhhcCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcH
Confidence 012234689999999999999999999999999999999999999987542
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccch
Q 004753 510 CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 510 ~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
..+.++++.++++||+++||+|.+..+ ..+|+++|+.+||+|||||||||||++|||||||||||++|++|+||+|
T Consensus 563 ---~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~ 638 (723)
T 4gyw_A 563 ---VGEPNIQQYAQNMGLPQNRIIFSPVAP-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVA 638 (723)
T ss_dssp ---GGHHHHHHHHHHTTCCGGGEEEEECCC-HHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHH
T ss_pred ---HHHHHHHHHHHhcCCCcCeEEECCCCC-HHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHH
Confidence 456889999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCch
Q 004753 590 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLK 669 (732)
Q Consensus 590 ~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 669 (732)
+|||+++|++||||.|.++|+++|++|++|++.|+++|++||+++.+|||||.++|+++||++|++||++||+|++|+++
T Consensus 639 ~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~ 718 (723)
T 4gyw_A 639 ASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 718 (723)
T ss_dssp HHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred HHHHHHcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 004753 670 R 670 (732)
Q Consensus 670 ~ 670 (732)
-
T Consensus 719 ~ 719 (723)
T 4gyw_A 719 I 719 (723)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=100.00 E-value=3e-78 Score=667.00 Aligned_cols=396 Identities=16% Similarity=0.177 Sum_probs=332.5
Q ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHHHHHh-hhc--cCCCCCCCCCCCCCCccccccCCCcccChhhhhhhHHhccccC
Q 004753 250 GQNRLLAMNYINEGHDDKLFEAHRDWGKRFM-RLY--SQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY 326 (732)
Q Consensus 250 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~lrIGyvS~d~~~h~v~~~~~~~l~~~d~ 326 (732)
..+..+-..|...-+..+.-.....+.++.. ... ...+.-..++.++++++|||+|.++++|+|.+++.+++.+ |+
T Consensus 224 ~~~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR 302 (631)
T 3q3e_A 224 SHDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AR 302 (631)
T ss_dssp HHHHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HT
T ss_pred ccceeeeccCCCCchhHHHHHHHHHHHHHhhHhhcCCcccccCCCCCCCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hh
Confidence 3444555666655444444443333333322 111 1111112233457889999999999999999888888886 99
Q ss_pred CcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCC----HHHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCCCC
Q 004753 327 QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 402 (732)
Q Consensus 327 ~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Ap 402 (732)
++|||++|+ +...|+.+ ++ ..++|+++.+++ +++++++|++|+|||||||+|||.+.++.++++||||
T Consensus 303 ~~FEV~~Ys-~~~~D~~t---r~----~~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAP 374 (631)
T 3q3e_A 303 EHFYLIGLG-SPSVDQAG---QE----VFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAP 374 (631)
T ss_dssp TTSEEEEEE-CTTSCHHH---HT----TSSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSS
T ss_pred hcEEEEEEe-CCCCCHHH---Hh----cCcEEEECCCCCccccHHHHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCch
Confidence 999999999 76778765 22 358999999998 7899999999999999999999977777777799999
Q ss_pred eEEecccCCCCCCCCCccEEEecCCCCCcCcccCCccceEEcCCCccccCCCCCCCCCCCCCCCC--CCCcEEEecCCCC
Q 004753 403 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALT--NGFITFGSFNNLA 480 (732)
Q Consensus 403 vq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~ 480 (732)
|||+|||||+|||+++|||+|+|+.+.| .+.+|+|+|+|||++++||.|+...|.+.+ ++++ +|.|||||||++.
T Consensus 375 VQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~p~~~~p~r~~-~~lp~~~G~v~Fg~fn~~~ 451 (631)
T 3q3e_A 375 IQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVPSALAPEKVD-YLLRENPEVVNIGIASTTM 451 (631)
T ss_dssp EEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCCCCTTCCSSCC-CCCCSCCSEEEEEEEECST
T ss_pred heEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCccccCCcccCCcccc-ccCCcCCCeEEEEECCccc
Confidence 9999999999999999999999997654 588999999999999999999877655444 3444 4699999999999
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC
Q 004753 481 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 560 (732)
Q Consensus 481 K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~ 560 (732)
|++|+++++|++||+++|+++||++..|. .+...+++.+++.++||+ +||+|+|.++ ..+|+++|+.+|||||||||
T Consensus 452 Ki~p~~l~~WarIL~~vP~s~L~l~~~g~-~~g~~~~~~~~~~~~GI~-~Rv~F~g~~p-~~e~la~y~~aDIfLDpfpy 528 (631)
T 3q3e_A 452 KLNPYFLEALKAIRDRAKVKVHFHFALGQ-SNGITHPYVERFIKSYLG-DSATAHPHSP-YHQYLRILHNCDMMVNPFPF 528 (631)
T ss_dssp TCCHHHHHHHHHHHHHCSSEEEEEEEESS-CCGGGHHHHHHHHHHHHG-GGEEEECCCC-HHHHHHHHHTCSEEECCSSS
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEecCC-CchhhHHHHHHHHHcCCC-ccEEEcCCCC-HHHHHHHHhcCcEEEeCCcc
Confidence 99999999999999999999998642111 113445666678899996 8999999988 79999999999999999999
Q ss_pred CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcc-ccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCC
Q 004753 561 AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPV 639 (732)
Q Consensus 561 ~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~-ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~ 639 (732)
+||||++|||||||||||++|+.+++|+|+|+|+++|++|| |+.|+++|+++|++|++|++.|+++|+++++++..+|+
T Consensus 529 ~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spL 608 (631)
T 3q3e_A 529 GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTL 608 (631)
T ss_dssp CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHH
T ss_pred cCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCC
Confidence 99999999999999999999999999999999999999995 99999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhc
Q 004753 640 CDGQNFALGLESTYRNMWHRYCK 662 (732)
Q Consensus 640 ~~~~~~~~~~e~~~~~~~~~~~~ 662 (732)
|| .+++.+|+.|+++|++|.+
T Consensus 609 Fd--~~~~~~e~~ye~~~~~w~~ 629 (631)
T 3q3e_A 609 FT--GDPRPMGQVFLEKLNAFLK 629 (631)
T ss_dssp TC--SCCTHHHHHHHHHHHHHHH
T ss_pred cc--hhHHHHHHHHHHHHHHHHh
Confidence 99 8999999999999999975
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=1.4e-64 Score=580.90 Aligned_cols=552 Identities=21% Similarity=0.252 Sum_probs=469.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 90 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 169 (732)
Q Consensus 90 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 169 (732)
.|++++|++.|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..++.++|.++..+|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Q 004753 170 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 170 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~---g~~~eA~~~~~~al~l~p~~ 246 (732)
++++++|++..++.++|.++...|++++|+++|+++++.+|++..++.++|.++..+ |++++|++.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhHHHHHHHHHhhhccCCcHHHHHHHHHHHHHH-hhhccCCCCCCCCCCCCCCccccccCCCcccChhhhhhhHHhcc--
Q 004753 247 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 323 (732)
Q Consensus 247 ~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lrIGyvS~d~~~h~v~~~~~~~l~~-- 323 (732)
...+..+ + ..+.+......+.|..+. .....+. ...+..+++++||+|++++|..|++..++..++..
T Consensus 162 ~~~~~~l--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFL--S-----EDASAAEQLACARTRAQAIAASVRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHT--T-----SCCCHHHHHHHHHHHHHHHHTTCCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHh--C-----CCCHHHHHHHHHHHHHhccCcccCCC--CCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 7765432 1 334444444444554432 2222221 12333457889999999999999999999999999
Q ss_pred ccCCcEEEEEEecccc-CChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCCCC
Q 004753 324 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 402 (732)
Q Consensus 324 ~d~~~fev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Ap 402 (732)
+++.+|||++|+..+. .+..+.+++. .+ .|+.+..++..++.+.|+++++||++++.+|+.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQ----AS-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHH----TS-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHh----cC-eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 8999999999997643 3555555543 23 6888887888899999999999999999999999999999999999
Q ss_pred eEEecccCCCCCCCCCccEEEecCCCCCcCcccCCccceEEcCCCccccCCCCCCCC-----CCCCCCCCCCCcEEEecC
Q 004753 403 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGP-----VCPTPALTNGFITFGSFN 477 (732)
Q Consensus 403 vq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~-----~~~~~~~~~~~~~f~~~~ 477 (732)
+|++|+|||.++|+..+||+++|.++.+.+....|.|++..+|+ +|.|....++ .+...+++++.++|++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn---~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~ 384 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQG---AFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFN 384 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSS---CSCCCCTTCCCCCCCCTGGGTCCTTSCEEEECC
T ss_pred eeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeEcCCC---cCCCCCCCCCCCCCCCccccCCCCCCEEEEeCC
Confidence 99999999999999999999999999999888889999999998 4555432222 222335778888888777
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEec
Q 004753 478 NLAKITPKVLQVWARILCAVPNSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 556 (732)
Q Consensus 478 ~~~K~~~~~~~~~~~il~~~p~~~l~l~~-~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld 556 (732)
...|..+.++++|.+|+++.|+++|+|+| +| +.++.+++.++++|++.+||+|+|.++ ..++...|+.+||||+
T Consensus 385 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g----~~~~~l~~~~~~~~l~~~~v~~~g~~~-~~~~~~~~~~adv~v~ 459 (568)
T 2vsy_A 385 NSYKLNPQSMARMLAVLREVPDSVLWLLSGPG----EADARLRAFAHAQGVDAQRLVFMPKLP-HPQYLARYRHADLFLD 459 (568)
T ss_dssp CGGGCCHHHHHHHHHHHHHCTTCEEEEECCST----THHHHHHHHHHHTTCCGGGEEEECCCC-HHHHHHHGGGCSEEEC
T ss_pred ccccCCHHHHHHHHHHHHhCCCcEEEEecCCH----HHHHHHHHHHHHcCCChhHEEeeCCCC-HHHHHHHHhcCCEEee
Confidence 66799999999999999999999999999 55 678999999999999669999999987 6789999999999999
Q ss_pred CCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhc
Q 004753 557 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSK 636 (732)
Q Consensus 557 ~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~ 636 (732)
|+++++|+|++|||+||+|||+++|..+.++++++++..+|++|+|.+|+++|++.+.+|++|++.+..+++..+++...
T Consensus 460 ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 539 (568)
T 2vsy_A 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRA 539 (568)
T ss_dssp CSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcC
Q 004753 637 SPVCDGQNFALGLESTYRNMWHRYCKG 663 (732)
Q Consensus 637 ~~~~~~~~~~~~~e~~~~~~~~~~~~~ 663 (732)
...|+++.+++.++++|+++|++||..
T Consensus 540 ~~~f~~~~~~~~~~~~y~~~~~~~~~~ 566 (568)
T 2vsy_A 540 SGVFHMDGFADDFGALLQALARRHGWL 566 (568)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999873
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.9e-27 Score=255.62 Aligned_cols=268 Identities=32% Similarity=0.461 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL--- 80 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--- 80 (732)
++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHc
Confidence 44555555555555555555555555555555555555555555555555555555555555555555544444433
Q ss_pred ------------------------HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 81 ------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 136 (732)
Q Consensus 81 ------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (732)
..+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23455666677888888888888888888888888888888888888888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 137 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
+++++|++..++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+++++.+|+++.++
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 274 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 217 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 217 ~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
..+|.++...|++++|++.|+++++++|++..++.+ ++..+...|+.+++.+.++
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN--LANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH--HHHHHHHcCCHHHHHHHHH
Confidence 888888888888888888888888888888776654 5566777788777665544
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.5e-27 Score=253.37 Aligned_cols=272 Identities=27% Similarity=0.442 Sum_probs=245.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH---
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI--- 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--- 78 (732)
+.+|+.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+....+..++.
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888888888888888888888888877665555443
Q ss_pred ------------------------HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 79 ------------------------ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 134 (732)
Q Consensus 79 ------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (732)
++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34456777888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 004753 135 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 214 (732)
Q Consensus 135 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 214 (732)
+++++.+|++..++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+++++..|++..
T Consensus 227 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 306 (388)
T 1w3b_A 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 215 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
++..+|.++...|++++|+..|+++++++|++..++.+ ++..+...|+.+++.+.+++.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN--LASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH--HHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998887665 567788889999888766543
No 6
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=8.2e-27 Score=250.73 Aligned_cols=238 Identities=21% Similarity=0.285 Sum_probs=216.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
..++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++..++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------- 138 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA------- 138 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH-------
Confidence 4689999999999999999999999999999999999999999999999999999999999999998765555
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------LGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNN 150 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 150 (732)
+|.++...|++++|+.+|+++++..|++...+.. +|.++...|++++|+++++++++.+|. ++.++.+
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 4555555779999999999999999887665554 499999999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004753 151 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 230 (732)
Q Consensus 151 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~ 230 (732)
+|.++...|++++|+.+|+++++..|+++.++.++|.++...|++++|+.+|+++++.+|++..++..+|.+|..+|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCh
Q 004753 231 LAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 231 eA~~~~~~al~l~p~~~ 247 (732)
+|+.+|++++++.|+..
T Consensus 299 ~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhCcccC
Confidence 99999999999998853
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.9e-26 Score=249.02 Aligned_cols=246 Identities=12% Similarity=0.042 Sum_probs=228.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
+++|+++|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..++.+++.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999997 99999999999999999988777766666
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RD 159 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g 159 (732)
.. .|++++|+..|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++.. .|
T Consensus 177 ~~-------~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 177 EW-------LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HH-------ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 55 45999999999999999999999999999999999999999999999999999999999999999999 56
Q ss_pred CHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----
Q 004753 160 NLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG----- 227 (732)
Q Consensus 160 ~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g----- 227 (732)
..++| +.+|+++++++|++..+|++++.++...| ++++|++.++++ +.+|++..++..+|.+|.++|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 55777 59999999999999999999999999988 699999999998 899999999999999999985
Q ss_pred ----CHHHHHHHHHHH-HhhCCCChhHHHHHHH
Q 004753 228 ----SISLAIDAYEQC-LKIDPDSRNAGQNRLL 255 (732)
Q Consensus 228 ----~~~eA~~~~~~a-l~l~p~~~~a~~~~~l 255 (732)
.+++|+++|+++ ++++|.....+..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 359999999999 9999998887766543
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=6.1e-25 Score=233.84 Aligned_cols=271 Identities=16% Similarity=0.174 Sum_probs=220.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CCHHHHHHHHH-
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFEIAKNNMAI- 78 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~- 78 (732)
.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..| ++...+..++.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH
Confidence 35555666666666666666666666666666666666666666666666666666666666666 44444444322
Q ss_pred ----HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004753 79 ----ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 154 (732)
Q Consensus 79 ----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (732)
.+..++.++...|++++|++.++++++..|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus 118 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2234467888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHH
Q 004753 155 YKDRDNLDKAVECYQMALSIKPNFSQSLN------------NLGVVYTVQGKMDAAAEMIEKAIAANPTYAE----AYNN 218 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~eA~~~l~~al~~~p~~~~----~~~~ 218 (732)
+...|++++|+..++++++..|++..++. .+|.++...|++++|+..++++++..|++.. ++..
T Consensus 198 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 99999999999999999999999988654 4488899999999999999999999999874 4667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 219 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 219 La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
+|.++...|++++|+.+|+++++.+|++..++.. ++..+...|+.+++.+.++..
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD--RAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999877654 677788889988877765543
No 9
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=5.3e-26 Score=244.01 Aligned_cols=262 Identities=23% Similarity=0.300 Sum_probs=238.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
.+++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|++...+..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------- 137 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA------- 137 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHH-------
Confidence 5689999999999999999999999999999999999999999999999999999999999999998765555
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHhcCCC--C
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMY----------------NLGVAYGEMLKFDMAIVFYELAFHFNPH--C 144 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~--~ 144 (732)
+|.++...|++++|+..++++++..|.+...+. .++.++ ..|++++|+.+++++++.+|. +
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCccc
Confidence 455555577999999999999999998877654 466666 999999999999999999999 8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 224 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~ 224 (732)
..++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC-----------hhHHHHHHHHHhhhccCCcHHHHHHHHH
Q 004753 225 DAGSISLAIDAYEQCLKIDPDS-----------RNAGQNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 225 ~~g~~~eA~~~~~~al~l~p~~-----------~~a~~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
..|++++|+.+|++++++.|++ ..++. .++..+...|+.+++....++
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS--TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH--HHHHHHHHHTCGGGHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH--HHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999999987 45544 466677777888776665543
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=7.9e-25 Score=232.96 Aligned_cols=269 Identities=14% Similarity=0.167 Sum_probs=244.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|++...+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------ 76 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ------ 76 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHH------
Confidence 46899999999999999999999999999999999999999999999999999999999999999998765554
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNW---HYADAMYNL------------GVAYGEMLKFDMAIVFYELAFHFNPHCAE 146 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (732)
+|.++...|++++|+..|+++++..| .+..++..+ |.++...|++++|++.++++++.+|.+..
T Consensus 77 -l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (359)
T 3ieg_A 77 -RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE 155 (359)
T ss_dssp -HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 45555556799999999999999999 888888777 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---------
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN--------- 217 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~--------- 217 (732)
++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++..++.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH--HHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 218 ---NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ--NRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 218 ---~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~--~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
.+|.++...|++++|+..|+++++..|++..... ...++..+...|+.+++.+..+...+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4488899999999999999999999999876543 33467788889999888877665433
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=2e-25 Score=235.07 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=239.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|++...+..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------- 95 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA------- 95 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH-------
Confidence 5678899999999999999999999999999999999999999999999999999999999999998765544
Q ss_pred hhhhHhhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 83 LGTKVKLEG-DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 83 lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
+|.++...| ++++|+.+|+++++.+|.+..++..+|.++...|++++|++.++++++..|++...+..+|.++...|++
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 555566677 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHH
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---------PTYAEAYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---------p~~~~~~~~La~~~~~~g~~~eA 232 (732)
++|+.+++++++..|+++.++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999999999999999999986 66678999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 233 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 233 ~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
+.+|+++++++|++..++.+ ++..+...|+.+++.+.++
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSA--IGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHH--HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHH--HHHHHHHhccHHHHHHHHH
Confidence 99999999999998877655 5677778888887765543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.6e-25 Score=243.71 Aligned_cols=271 Identities=17% Similarity=0.185 Sum_probs=237.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIA 79 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~ 79 (732)
.+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|+++++..|++. ..+..++..
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 46777788888888888888888888888888888888888888888888888888888888888776 666555443
Q ss_pred -----HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004753 80 -----LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 154 (732)
Q Consensus 80 -----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 154 (732)
+..+|..+...|++++|+..|+++++..|.+..++..+|.+|...|++++|++.|+++++.+|.+..++..+|.+
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 556677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHH
Q 004753 155 YKDRDNLDKAVECYQMALSIKPNFSQSLNNL------------GVVYTVQGKMDAAAEMIEKAIAANPTYA----EAYNN 218 (732)
Q Consensus 155 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~eA~~~l~~al~~~p~~~----~~~~~ 218 (732)
+...|++++|+..|+++++..|++...+..+ |.++...|++++|+.+|+++++..|+++ ..+..
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 9999999999999999999999999887666 9999999999999999999999999985 47889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 219 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 219 La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
+|.++...|++++|+..++++++++|++..++.. ++..+...|+.+++.+.++..
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD--RAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH--HHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999887765 566777888888877665543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.4e-25 Score=233.35 Aligned_cols=246 Identities=19% Similarity=0.173 Sum_probs=230.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
.++..++.++...|++++|+..++++++.+|++..++..+|.++...| ++++|+.+|+++++..|++...+..++
T Consensus 57 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~---- 132 (330)
T 3hym_B 57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYG---- 132 (330)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHH----
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHH----
Confidence 457788999999999999999999999999999999999999999999 999999999999999999876655554
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.++...|++++|+..++++++..|.+..++..+|.++...|++++|+++++++++.+|.+..++..+|.++...|++
T Consensus 133 ---~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 133 ---HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp ---HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH
Confidence 44555679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 162 DKAVECYQMALSIK---------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 162 ~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA 232 (732)
++|+.+++++++.. |....++..+|.++...|++++|+.+++++++.+|++..++..+|.++..+|++++|
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 99999999999986 667789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHH
Q 004753 233 IDAYEQCLKIDPDSRNAGQNRLL 255 (732)
Q Consensus 233 ~~~~~~al~l~p~~~~a~~~~~l 255 (732)
+.+|+++++++|++..++..+..
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHccCCCchHHHHHHHH
Confidence 99999999999999888766443
No 14
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-25 Score=226.24 Aligned_cols=241 Identities=17% Similarity=0.208 Sum_probs=224.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++++.+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+.++++++++.|+........+.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 5789999999999999999999999999999 889999999999999999999999999999998866433344466778
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.+|.++...|++++|+.+++++++..|. +.++...|++++|+..+++++..+|.+..++..+|.++...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 8888888899999999999999999987 46778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
++|+.+++++++..|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++..+|++++|+.+|+++++
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC------CCChhHHH
Q 004753 242 ID------PDSRNAGQ 251 (732)
Q Consensus 242 l~------p~~~~a~~ 251 (732)
++ |++..+..
T Consensus 236 ~~~~~~~~p~~~~~~~ 251 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQ 251 (258)
T ss_dssp HHHHHHTTTTHHHHHH
T ss_pred hChhhcCCCchHHHHH
Confidence 99 77665544
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=3.3e-25 Score=233.08 Aligned_cols=262 Identities=18% Similarity=0.209 Sum_probs=235.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+.++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++..|++...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------- 94 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA------- 94 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH-------
Confidence 4678999999999999999999999999999999999999999999999999999999999999998765554
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL--------------GV-AYGEMLKFDMAIVFYELAFHFNPHCAEA 147 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~ 147 (732)
+|.++...|++++|++.++++++..|.+...+..+ +. ++...|++++|+++++++++.+|.+..+
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 45555567799999999999999999988777776 66 6888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004753 148 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 227 (732)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g 227 (732)
+..+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|+..++++++..|++..++..+|.+|...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC------------ChhHHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 228 SISLAIDAYEQCLKIDPD------------SRNAGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 228 ~~~eA~~~~~~al~l~p~------------~~~a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
++++|+++|++++++.|+ +..++ ..++..+...|+.+++.+..+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW--DFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH--HHHHHHHHHTTCHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHH--HHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999998 44444 346777778888887665543
No 16
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=1.6e-25 Score=229.73 Aligned_cols=247 Identities=17% Similarity=0.156 Sum_probs=225.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++ .+.+... .+.++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~---~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA---KSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH---HHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999 4443322 245567
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.+|.++...|++++|+++|+++++.+|.+..++..+|.++...|++++|+++++++++.+|.+..++.++|...+..+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 78888888899999999999999999999999999999999999999999999999999999999999999555556799
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHH
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN---PT-----YAEAYNNLGVLYRDAGSIS 230 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~l~~al~~~---p~-----~~~~~~~La~~~~~~g~~~ 230 (732)
++|+..|+++++..|++..++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 999999999999885 44 2368899999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHH
Q 004753 231 LAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 231 eA~~~~~~al~l~p~~~~a~~~ 252 (732)
+|+++|+++++++|++..+...
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHH
Confidence 9999999999999999988765
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.4e-24 Score=237.91 Aligned_cols=268 Identities=14% Similarity=0.161 Sum_probs=243.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+++.+|..+...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++..|++..++..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------ 99 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ------ 99 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence 46789999999999999999999999999999999999999999999999999999999999999998765554
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYA---DAMYNL------------GVAYGEMLKFDMAIVFYELAFHFNPHCAE 146 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 146 (732)
+|.++...|++++|+..|+++++.+|.+. .++..+ |.++...|++++|+..|+++++..|.+..
T Consensus 100 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 100 -RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 45555557799999999999999999988 776555 66699999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL------- 219 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~L------- 219 (732)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHhhCCCChhHH--HHHHHHHhhhccCCcHHHHHHHHHHH
Q 004753 220 -----GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG--QNRLLAMNYINEGHDDKLFEAHRDWG 276 (732)
Q Consensus 220 -----a~~~~~~g~~~eA~~~~~~al~l~p~~~~a~--~~~~la~~~~~~~~~~~a~~~~~~~~ 276 (732)
|.++...|++++|+.+|++++++.|++.... ....++..+...|+.+++.+..+...
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999986632 34456778888899988877666543
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.1e-24 Score=240.79 Aligned_cols=274 Identities=19% Similarity=0.208 Sum_probs=244.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++|+.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++..++..++.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999988888888776
Q ss_pred HhhhhHh-------------------------------------------------------------------------
Q 004753 82 DLGTKVK------------------------------------------------------------------------- 88 (732)
Q Consensus 82 ~lg~~~~------------------------------------------------------------------------- 88 (732)
.+|..-.
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 6542111
Q ss_pred -----------------------------hcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHH
Q 004753 89 -----------------------------LEGDINQGVAYYKKALYYNWHYAD-------AMYNLGVAYGEMLKFDMAIV 132 (732)
Q Consensus 89 -----------------------------~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~ 132 (732)
..+++++|+..|+++++.+|++.. ++..+|.++...|++++|+.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 113677888888888888998855 57788899999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 133 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
.++++++.+|+ ..++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+..++++++.+|++
T Consensus 265 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 265 LLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHHH
Q 004753 213 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 278 (732)
Q Consensus 213 ~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 278 (732)
..++..+|.++...|++++|+.+|+++++.+|++..++.. ++..+...|+.+++.+.++.....
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF--FAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999887665 577788889999888776665443
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.7e-24 Score=215.51 Aligned_cols=199 Identities=20% Similarity=0.176 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 34 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 113 (732)
Q Consensus 34 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 113 (732)
.++.+++.+|.++...|++++|+..|+++++.+|++..++..++.++.. .|++++|+..|+++++++|++..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a 75 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLK-------LGLVNPALENGKTLVARTPRYLGG 75 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCcHHH
Confidence 3444555555555555555555555555555555554443333332222 335555555555555555555555
Q ss_pred HHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 004753 114 MYNLGVAYGEM-----------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 182 (732)
Q Consensus 114 ~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 182 (732)
+.++|.++... |++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++ +++.++
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH
Confidence 55555555555 888888888888888888888888888888888888888888888888888 888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 183 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 183 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
.++|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++-
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888887653
No 20
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2e-23 Score=239.56 Aligned_cols=266 Identities=18% Similarity=0.134 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
..+++.+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|++...+..
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------ 378 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA------ 378 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHH------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHH------
Confidence 35788999999999999999999999999999999999999999999999999999999999999988765554
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
++..|...|++++|+++|+++++.+|.+..++..++.+|...|++++|++.|+++++..|++..++..++.++...|++
T Consensus 379 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 -VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH
T ss_pred -HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH
Confidence 4555556779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAID 234 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~------~p~~-~~~~~~La~~~~~~g~~~eA~~ 234 (732)
++|+++|+++++..|.++.++..+|.++...|++++|+++|+++++. +|+. ..++..+|.+|...|++++|++
T Consensus 458 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999998 5654 7899999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHH
Q 004753 235 AYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 276 (732)
Q Consensus 235 ~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~ 276 (732)
.|+++++++|++..++.. ++..|...|+.+++.+.+++..
T Consensus 538 ~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTA--IALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHSSCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999998877654 6777888999988877665543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=233.55 Aligned_cols=241 Identities=20% Similarity=0.217 Sum_probs=213.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH---HH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---AI 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~ 78 (732)
+.+|+.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|++++++.|++...+..+ +.
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 178 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence 468999999999999999999999999999999999999999999999999999999999999998876655544 45
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
.+..+|.++...|++++|+.+|+++++.+|. ++.++..+|.++...|++++|+++|+++++.+|++..++.++|.++.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6667788899999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYR 224 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------------~~~~~~~La~~~~ 224 (732)
..|++++|+.+|+++++++|+++.++.++|.++...|++++|+.+|++++++.|+ +..++..++.++.
T Consensus 259 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876 3578999999999
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 004753 225 DAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 225 ~~g~~~eA~~~~~~al~l 242 (732)
.+|+.+.+....++.+..
T Consensus 339 ~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 339 LMDQPELFQAANLGDLDV 356 (365)
T ss_dssp HHTCHHHHHHHHTTCCGG
T ss_pred HcCcHHHHHHHHHhhHHH
Confidence 999999998887765443
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.6e-24 Score=240.47 Aligned_cols=273 Identities=15% Similarity=0.164 Sum_probs=242.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH----------------------
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY---------------------- 59 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~---------------------- 59 (732)
+.+++.+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|+..|
T Consensus 59 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (537)
T 3fp2_A 59 PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNL 138 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999888887655
Q ss_pred --------------------------------------------------------------------------------
Q 004753 60 -------------------------------------------------------------------------------- 59 (732)
Q Consensus 60 -------------------------------------------------------------------------------- 59 (732)
T Consensus 139 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 218 (537)
T 3fp2_A 139 NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLL 218 (537)
T ss_dssp HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence
Q ss_pred -------HHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 60 -------ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 132 (732)
Q Consensus 60 -------~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (732)
+++++..|++...+..++.++..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|++++|++
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHH
Confidence 33444566666666777888999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 133 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
+++++++.+|++..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++.+|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHH----HHHHhhhcc----------CCcHHHHHHHHHH
Q 004753 213 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR----LLAMNYINE----------GHDDKLFEAHRDW 275 (732)
Q Consensus 213 ~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~----~la~~~~~~----------~~~~~a~~~~~~~ 275 (732)
+.++..+|.++...|++++|+.+|++++++.|++....... ..+..+... |+.+++...++..
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999988776543321 233444444 6666666555443
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=4.4e-24 Score=212.50 Aligned_cols=204 Identities=23% Similarity=0.219 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++...+..++.++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999888777777666
Q ss_pred Hhh----hhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004753 82 DLG----TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 157 (732)
Q Consensus 82 ~lg----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (732)
.++ ......|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++ +++.++.++|.++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 650 000011699999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 158 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 206 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 206 (732)
.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++-
T Consensus 164 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998863
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=7.8e-24 Score=227.07 Aligned_cols=240 Identities=19% Similarity=0.202 Sum_probs=220.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH-----
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM----- 76 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----- 76 (732)
+.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|++...+..+
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999877554321
Q ss_pred ----HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004753 77 ----AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 150 (732)
Q Consensus 77 ----a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 150 (732)
...+..++.++ ..|++++|+..|+++++.+|. +..++..+|.++...|++++|+.+++++++.+|++..++..
T Consensus 178 ~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 256 (368)
T 1fch_A 178 GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 11112344444 678999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHH
Q 004753 151 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNL 219 (732)
Q Consensus 151 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-----------~~~~~~L 219 (732)
+|.++...|++++|+..|++++++.|++..++..+|.++...|++++|+.+|++++++.|++ ..++..+
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 004753 220 GVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 220 a~~~~~~g~~~eA~~~~~~al~l 242 (732)
|.+|..+|++++|..+++++++.
T Consensus 337 ~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 337 RLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999999999887764
No 25
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=6.2e-23 Score=235.39 Aligned_cols=243 Identities=18% Similarity=0.205 Sum_probs=228.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
.++..++.++...|++++|+..++++++..|++..++..+|.+|...|++++|+++|+++++..|++...+..++
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~----- 414 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA----- 414 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH-----
Confidence 467889999999999999999999999999999999999999999999999999999999999999876655544
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
.++...|++++|++.|+++++..|.+..++..++.+|...|++++|+++|+++++..|.++.++..++.++...|+++
T Consensus 415 --~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 --HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp --HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 455556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 163 KAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 235 (732)
Q Consensus 163 ~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~ 235 (732)
+|++.|+++++. +|+. ..++..+|.++...|++++|++.++++++.+|+++.++..+|.+|...|++++|+++
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999998 5654 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHH
Q 004753 236 YEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 236 ~~~al~l~p~~~~a~~~ 252 (732)
|+++++++|++..++..
T Consensus 573 ~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 573 LHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCChHHHHH
Confidence 99999999999887654
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.1e-23 Score=221.52 Aligned_cols=244 Identities=20% Similarity=0.222 Sum_probs=221.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH----
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA---- 77 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---- 77 (732)
+.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|++...+..+.
T Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV 134 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999998775554431
Q ss_pred --HHHHHh-hh-hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004753 78 --IALTDL-GT-KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 153 (732)
Q Consensus 78 --~~~~~l-g~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (732)
.....+ +. ++...|++++|+.+++++++..|.+..++..+|.++...|++++|+++++++++.+|++..++..+|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 214 (327)
T 3cv0_A 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGA 214 (327)
T ss_dssp -----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 111122 33 47778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHH
Q 004753 154 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGV 221 (732)
Q Consensus 154 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------------~~~~~~~La~ 221 (732)
++...|++++|+..++++++..|++..++..+|.++...|++++|+++++++++..|+ +..++..++.
T Consensus 215 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 222 LYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 222 ~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
++..+|++++|...++++++..|+
T Consensus 295 ~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhcch
Confidence 999999999999999998877654
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.8e-23 Score=233.08 Aligned_cols=272 Identities=17% Similarity=0.148 Sum_probs=214.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++++.+|..++..|++++|+..|+++++.+| +..++..+|.++...|++++|+..++++++.+|++..++..++.++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777776 46677777777777777777777777777777777666666555554
Q ss_pred Hhh-----------------------------------------------------------------------------
Q 004753 82 DLG----------------------------------------------------------------------------- 84 (732)
Q Consensus 82 ~lg----------------------------------------------------------------------------- 84 (732)
.+|
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 433
Q ss_pred -----------------------------hhHhh---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHH
Q 004753 85 -----------------------------TKVKL---EGDINQGVAYYKKALY-----Y--N-------WHYADAMYNLG 118 (732)
Q Consensus 85 -----------------------------~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la 118 (732)
..+.. .|++++|+..|+++++ . . |.+..++..+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 22222 6788888888888887 5 3 33456788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 119 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 198 (732)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 198 (732)
.++...|++++|+..++++++.+|. ..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999998888 888889999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 199 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 199 ~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++..++.. ++..+...|+.+++.+.+.....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF--FAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHH--HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHH--HHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999888899999999999999999999999999998888776544 56677778888887776665443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.9e-22 Score=224.45 Aligned_cols=266 Identities=16% Similarity=0.099 Sum_probs=225.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALE---------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP----- 67 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p----- 67 (732)
+..|..+|.++..+|++++|+++|++++++ +|....+|.++|.+|..+|++++|+.++++++++.+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888999999999999999999999885 677788999999999999999999999999998733
Q ss_pred ---CCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcC
Q 004753 68 ---NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG---EMLKFDMAIVFYELAFHFN 141 (732)
Q Consensus 68 ---~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~ 141 (732)
.....+.+++.++..++ .+++++|+++|+++++++|++++++..++.++. ..++.++|++.++++++++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~-----~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCG-----GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHC-----TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHc-----cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 34455555555554444 568999999999999999999999999998865 4577789999999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 142 PHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 142 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
|++..++.++|..+.. .+++++|++++++++..+|....++.++|.+|...|++++|+..++++++.+|+++.++.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999998877665 467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-------------------CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHH
Q 004753 218 NLGVLYRDA-------------------GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 218 ~La~~~~~~-------------------g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
.+|.+|... +.+++|+..|+++++++|++..++.+ ++..|...|+.+++.+.+++
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI--LASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHH--HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhh--HHHHHHHhccHHHHHHHHHH
Confidence 999988653 34678899999999999988877655 56777888888887776554
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=1.1e-23 Score=227.53 Aligned_cols=224 Identities=11% Similarity=0.047 Sum_probs=204.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCC-HHHHHHHHHHHHHhC
Q 004753 29 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYN 107 (732)
Q Consensus 29 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~ 107 (732)
+..+|++..++..+|.++...|++++|+..|+++++++|++..++.+++.++.. .|+ +++|+.+|+++++++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~-------~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKS-------LQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHC
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-------cccCHHHHHHHHHHHHHHC
Confidence 445677889999999999999999999999999999999998877766666555 556 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
|++..+|+++|.++..+|++++|+..|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChhHHHHHHHHHhh
Q 004753 188 VYTV-QGKMDAA-----AEMIEKAIAANPTYAEAYNNLGVLYRDAG--SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 259 (732)
Q Consensus 188 ~~~~-~g~~~eA-----~~~l~~al~~~p~~~~~~~~La~~~~~~g--~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~ 259 (732)
++.. .|.+++| +.+|+++++++|++..+|++++.++...| ++++|++.++++ +.+|++..+... ++..|
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~--La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAF--LVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHH--HHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHH--HHHHH
Confidence 9999 5665888 59999999999999999999999999988 699999999998 899998877665 44444
Q ss_pred hcc
Q 004753 260 INE 262 (732)
Q Consensus 260 ~~~ 262 (732)
...
T Consensus 320 ~~~ 322 (382)
T 2h6f_A 320 EDM 322 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.5e-23 Score=231.31 Aligned_cols=244 Identities=18% Similarity=0.161 Sum_probs=229.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+++.+|.++...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..++++++..|.+...+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------ 309 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH------ 309 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHH------
Confidence 357889999999999999999999999999999 9999999999999999999999999999999998765554
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++
T Consensus 310 -l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 310 -RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp -HHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH
Confidence 4555555779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 162 DKAVECYQMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA 232 (732)
++|+.+++++++..|++.. ++..+|.++.. .|++++|+..++++++.+|++..++..+|.+|...|++++|
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999888755 99999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHH
Q 004753 233 IDAYEQCLKIDPDSRNAGQNR 253 (732)
Q Consensus 233 ~~~~~~al~l~p~~~~a~~~~ 253 (732)
+.+|+++++++|++..+....
T Consensus 469 ~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 469 ITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHH
Confidence 999999999999988876654
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=9.9e-23 Score=204.70 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 115 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 115 (732)
+..++.+|.++...|++++|+.+|+++++..|++...+..++.++...+ ++++|+..++++++..|.+..++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~ 95 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVN-------ELERALAFYDKALELDSSAATAYY 95 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCcchHHHH
Confidence 3445555555555555555555555555555555555555555544432 555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 004753 116 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 195 (732)
Q Consensus 116 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 195 (732)
.+|.++...|++++|+++++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 55555555666666666666666655555556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 196 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 196 ~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
++|+..++++++..|++..++..+|.+|...|++++|+.+|+++++++|++..++.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 66666666666666666666666666666666666666666666666666555543
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.9e-21 Score=216.38 Aligned_cols=269 Identities=18% Similarity=0.141 Sum_probs=228.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCCHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEI 71 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~ 71 (732)
+.+|.++|.+|..+|++++|+.+|++++++ .+..+.++..+|.++... +++++|+.+|+++++++|+++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 346889999999999999999999999885 345678899999887765 5799999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHH
Q 004753 72 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM----LKFDMAIVFYELAFHFNPHCAEA 147 (732)
Q Consensus 72 ~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~ 147 (732)
.+..++.++..++ ..++.++|++.++++++++|.+..++..+|..+... +++++|++++++++..+|....+
T Consensus 174 ~~~~~~~~~~~l~----~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~ 249 (472)
T 4g1t_A 174 FTSGLAIASYRLD----NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHH----HSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHhc----CchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHH
Confidence 8888887776654 357888999999999999999999999998777654 67889999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHh
Q 004753 148 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-------------------GKMDAAAEMIEKAIAA 208 (732)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~eA~~~l~~al~~ 208 (732)
+.++|.++...|++++|+..++++++.+|+++.++.++|.+|... +.+++|+..++++++.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999988643 3468899999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH-HHHHH-HhhhccCCcHHHHHHHHH
Q 004753 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ-NRLLA-MNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 209 ~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~-~~~la-~~~~~~~~~~~a~~~~~~ 274 (732)
+|.+..++..+|.+|...|++++|+.+|+++++++|++..... ...++ ......++.+++++.+.+
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999987654321 11122 233456777777765544
No 33
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=5.5e-21 Score=196.64 Aligned_cols=227 Identities=22% Similarity=0.337 Sum_probs=208.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
+++++.+|..+...|++++|+.+|+++++ +.+..+++.+|.++.. .+++++|+.+|+++++.. +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~------ 75 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN------ 75 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH------
Confidence 56899999999999999999999999998 7888999999999999 999999999999999885 343
Q ss_pred HHHHHhhhhHhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHH
Q 004753 78 IALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACN 149 (732)
Q Consensus 78 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 149 (732)
++..+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+++|+++++.. +..++.
T Consensus 76 -a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 150 (273)
T 1ouv_A 76 -GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT 150 (273)
T ss_dssp -HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred -HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH
Confidence 45556666666 889999999999999874 89999999999999 999999999999999976 688999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 150 NLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 150 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
++|.++.. .+++++|+.+|+++++. .++.++.++|.+|.. .+++++|+.+|+++++..+ +.+++.+|.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~ 226 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGA 226 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 99999999 99999999999999987 468999999999999 9999999999999999865 889999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhCCCCh
Q 004753 222 LYRD----AGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 222 ~~~~----~g~~~eA~~~~~~al~l~p~~~ 247 (732)
+|.. .+++++|+++|++++++.|++.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 9999 9999999999999999988643
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=6.6e-22 Score=198.62 Aligned_cols=219 Identities=22% Similarity=0.271 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+|+.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|++...+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------ 96 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG------ 96 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH------
Confidence 46789999999999999999999999999999999999999999999999999999999999999988765554
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
++.++...|++++|+++++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++
T Consensus 97 -la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 97 -AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 4555555779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 227 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g 227 (732)
++|+..++++++..|++..++..+|.++...|++++|+.+++++++.+|++..++..++.+....+
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999998887765544
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=217.47 Aligned_cols=276 Identities=21% Similarity=0.248 Sum_probs=234.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
+.+++.+|..+...|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.++++++++.+... .....+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-ccHHHH
Confidence 3568899999999999999999999999999987 46899999999999999999999999988743321 122446
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLK--------------------FDMAI 131 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 131 (732)
.++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 778889999999999999999999999886543 4589999999999999 99999
Q ss_pred HHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHH
Q 004753 132 VFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS------QSLNNLGVVYTVQGKMDAAA 199 (732)
Q Consensus 132 ~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~ 199 (732)
+++++++++ .+....++.++|.++...|++++|+.++++++++.+... .++.++|.++...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999999887 333466899999999999999999999999998865443 38999999999999999999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----HHHHHHHHHhhhccCCcHHHH
Q 004753 200 EMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQNRLLAMNYINEGHDDKLF 269 (732)
Q Consensus 200 ~~l~~al~~~p~~------~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~~~la~~~~~~~~~~~a~ 269 (732)
.+++++++..+.. ..++..+|.+|...|++++|+.+|++++++.+.... ......++..|...|+.+++.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999886654 678999999999999999999999999998665422 334456788888899999888
Q ss_pred HHHHHHHHH
Q 004753 270 EAHRDWGKR 278 (732)
Q Consensus 270 ~~~~~~~~~ 278 (732)
+.+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665443
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=1.1e-21 Score=188.87 Aligned_cols=171 Identities=25% Similarity=0.383 Sum_probs=165.7
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
+.+|+.+|.++..+|++++|++.|+++++++|++..++..+|.+|...|++++|+..+++++...|++..++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 45677888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
..+++++|...++++++..|++..++..+|.++..+|++++|++.|+++++.+|+++.+++++|.+|..+|++++|+++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCh
Q 004753 237 EQCLKIDPDSR 247 (732)
Q Consensus 237 ~~al~l~p~~~ 247 (732)
+++++++|++.
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999753
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=1.9e-22 Score=220.02 Aligned_cols=274 Identities=20% Similarity=0.256 Sum_probs=233.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYA----EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
..++.+|..+...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.++++++++..... .....+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc-CchHHHH
Confidence 4578899999999999999999999999999986 5899999999999999999999999998742211 1234466
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYY------NWHYADAMYNLGVAYGEMLK-----------------FDMAIVFYE 135 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~ 135 (732)
++..+|.++...|++++|+.+++++++. .+....++..+|.+|...|+ +++|+++++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888899999999999999999999988 45567799999999999999 999999999
Q ss_pred HHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 136 LAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS------QSLNNLGVVYTVQGKMDAAAEMIE 203 (732)
Q Consensus 136 ~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~l~ 203 (732)
+++++. +....++.++|.++...|++++|+.++++++++.+... .++.++|.++...|++++|+.+++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 998863 23456899999999999999999999999999866433 388999999999999999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----HHHHHHHHHhhhccCCcHHHHHHHH
Q 004753 204 KAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQNRLLAMNYINEGHDDKLFEAHR 273 (732)
Q Consensus 204 ~al~~~p~~------~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~~~la~~~~~~~~~~~a~~~~~ 273 (732)
+++...+.. ..++..+|.+|..+|++++|+.+|++++++.++... ......++..|...|+.+++.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999986643 678899999999999999999999999988654322 3344557888889999998887766
Q ss_pred HHHH
Q 004753 274 DWGK 277 (732)
Q Consensus 274 ~~~~ 277 (732)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=3.4e-21 Score=195.00 Aligned_cols=213 Identities=18% Similarity=0.128 Sum_probs=195.2
Q ss_pred hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC
Q 004753 31 ERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 109 (732)
Q Consensus 31 ~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 109 (732)
.+|.. +.+++.+|.++...|++++|+.+|+++++..|++...+.. +|.++...|++++|+++++++++.+|.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAA-------LAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45554 7889999999999999999999999999999988655544 455555577999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 110 YADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
+..++..+|.++...|++++|+++++++++ ..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 183 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 999999999999999999999999999999 788889999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 004753 188 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 188 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 250 (732)
++...|++++|+.+++++++..|.+...+..++.++...|++++|..++++++++.|++....
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987664
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=6e-21 Score=193.20 Aligned_cols=211 Identities=18% Similarity=0.092 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|.+...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN------ 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH------
Confidence 46789999999999999999999999999999999999999999999999999999999999999988665544
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALY--YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 159 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 159 (732)
++.++...|++++|+++++++++ ..|.+..++..+|.++...|++++|+++++++++..|.+..++..+|.++...|
T Consensus 111 -la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 111 -YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 45555567799999999999999 888889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004753 160 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 219 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~L 219 (732)
++++|+.+++++++..|.+...+..++.++...|++++|.++++++++..|+++.+...+
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998776543
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=4.3e-21 Score=199.90 Aligned_cols=232 Identities=12% Similarity=0.006 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEIAKNNMAIALT 81 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~ 81 (732)
+.+.++.+|...|++++|+..++. .+|....++..++..+...+++++|++.+++++.. +|++...+..
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~------ 106 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLM------ 106 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHH------
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHH------
Confidence 456667777777777777776655 24445667777777777777777777777777765 4766554433
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcC
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG--VIYKDRD 159 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g 159 (732)
+|.++...|++++|++.+++ |.+.+++..+|.++..+|++++|++.++++++.+|++.......+ .++...|
T Consensus 107 -la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~ 180 (291)
T 3mkr_A 107 -AASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180 (291)
T ss_dssp -HHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT
T ss_pred -HHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch
Confidence 44444445677777777776 677777777777777777788888777777777777654433333 3333457
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 004753 160 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL-AIDAYEQ 238 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~e-A~~~~~~ 238 (732)
++++|+..|+++++..|+++.+++++|.++..+|++++|+..|+++++.+|+++.++.++|.++...|+..+ +..++++
T Consensus 181 ~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 777777777777777777777777777777777888888888887777777777777777777777777765 4577777
Q ss_pred HHhhCCCChhHH
Q 004753 239 CLKIDPDSRNAG 250 (732)
Q Consensus 239 al~l~p~~~~a~ 250 (732)
+++++|+++.+.
T Consensus 261 ~~~~~P~~~~~~ 272 (291)
T 3mkr_A 261 LKDAHRSHPFIK 272 (291)
T ss_dssp HHHHCTTCHHHH
T ss_pred HHHhCCCChHHH
Confidence 777777776543
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=9.9e-21 Score=187.24 Aligned_cols=214 Identities=15% Similarity=0.104 Sum_probs=186.7
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC
Q 004753 31 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 110 (732)
Q Consensus 31 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 110 (732)
..|.++.++..+|.++...|++++|+.+++++++..|++...+.. +|.++...|++++|+++++++++..|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLV-------RAEIYQYLKVNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHH-------HHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 356678888889999999999999999999999888887654444 4455555678999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 111 ADAMYNLGVAYGEM-LKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 111 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
..++..+|.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+.+++++++..|.+..++..+|.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999 999999999999998 666678899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 188 VYTVQGKMDAAAEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 188 ~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
++...|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+.+.+|++..+..
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999 88999999999999999999999999999999999877643
No 42
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=4e-22 Score=209.39 Aligned_cols=273 Identities=21% Similarity=0.251 Sum_probs=230.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
..++..|..+...|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.++++++++.+... .....+.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-ccHHHHH
Confidence 467889999999999999999999999999998 47889999999999999999999999988743221 1223466
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLK--------------------FDMAIV 132 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 132 (732)
++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|+ +++|++
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 78888999999999999999999999876543 3489999999999999 999999
Q ss_pred HHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 004753 133 FYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAE 200 (732)
Q Consensus 133 ~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 200 (732)
++++++++ .+....++.++|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999876 23346689999999999999999999999999875432 3388999999999999999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----HHHHHHHHHhhhccCCcHHHHH
Q 004753 201 MIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQNRLLAMNYINEGHDDKLFE 270 (732)
Q Consensus 201 ~l~~al~~~p~~------~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~~~la~~~~~~~~~~~a~~ 270 (732)
+++++++..+.. ..++..+|.++...|++++|+.++++++++.+.... ......++..|...|+.+++.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 999999886554 678899999999999999999999999988654322 3344457888888999988877
Q ss_pred HHHHHH
Q 004753 271 AHRDWG 276 (732)
Q Consensus 271 ~~~~~~ 276 (732)
.+++..
T Consensus 325 ~~~~a~ 330 (338)
T 3ro2_A 325 FAEKHL 330 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=4.6e-21 Score=184.59 Aligned_cols=170 Identities=24% Similarity=0.355 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+|+++|.++..+|++++|++.|+++++.+|++..++..+|.++...|++++|+..+++++...|+....+..+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 79 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL----- 79 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH-----
Confidence 356677777777777777777777777777777777777777777777777777777777777666665444333
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
|..+...+++++|...++++++.+|.+..++..+|.++..+|++++|++.|+++++++|.++.++.++|.++..+|++
T Consensus 80 --~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 --GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 333333446666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhCCCC
Q 004753 162 DKAVECYQMALSIKPNF 178 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~ 178 (732)
++|+++|+++++++|++
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 66666666666665543
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=1.3e-21 Score=218.32 Aligned_cols=215 Identities=15% Similarity=0.129 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHH
Q 004753 17 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL-ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 95 (732)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~ 95 (732)
++++++..+++.....|.+..+++.+|.++...|++ ++|+.+|+++++++|++..++..++ .+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg-------~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG-------EVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHH-------HHHHHcCCHHH
Confidence 366777777777778888889999999999999999 9999999999999988876555544 44444668999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------
Q 004753 96 GVAYYKKALYYNWHYADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-------- 158 (732)
Q Consensus 96 A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------- 158 (732)
|+++|+++++++|+ ..++.++|.++... |++++|++.|+++++++|++..+++++|.++...
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999888 68888999999888 8999999999999999999999999999999888
Q ss_pred CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 159 DNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 235 (732)
Q Consensus 159 g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~ 235 (732)
|++++|+.+|+++++++| +++.++.++|.+|...|++++|++.|+++++++|++..++..++.++..+|++++|++.
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999888 88889999999999999999999999999999999998999999999988888888876
Q ss_pred HHHH
Q 004753 236 YEQC 239 (732)
Q Consensus 236 ~~~a 239 (732)
+.+.
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6543
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.1e-21 Score=193.09 Aligned_cols=226 Identities=15% Similarity=0.159 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC----
Q 004753 35 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---- 110 (732)
Q Consensus 35 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 110 (732)
.+..+..+|.++...|++++|+.+|+++++.. .+...+ ..+|.++...|++++|+.+++++++..|.+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYL-------NNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHH-------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHH-------HHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 46789999999999999999999999999999 665544 445555666779999999999999998876
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 111 ---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 111 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
..++..+|.++...|++++|++++++++++.|. +.++...|++++|+..+++++..+|.++.++..+|.
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 789999999999999999999999999999987 566777889999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHH
Q 004753 188 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 267 (732)
Q Consensus 188 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~ 267 (732)
++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++.+|++..++.. ++..+...|+.++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR--KATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877654 6777888899988
Q ss_pred HHHHHHHHHHH
Q 004753 268 LFEAHRDWGKR 278 (732)
Q Consensus 268 a~~~~~~~~~~ 278 (732)
+.+..+...+.
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88776665443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=2.8e-20 Score=184.00 Aligned_cols=211 Identities=18% Similarity=0.117 Sum_probs=197.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|++...+ .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~ 80 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN-------N 80 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-------H
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999886554 4
Q ss_pred HhhhhHhhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 004753 82 DLGTKVKLE-GDINQGVAYYKKALY--YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 158 (732)
Q Consensus 82 ~lg~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (732)
.+|.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+.+++++++..|.+..++..+|.++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 456666667 899999999999999 66777899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004753 159 DNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 219 (732)
Q Consensus 159 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~L 219 (732)
|++++|+..++++++..| .+...+..++.++...|++++|..+++.+.+..|+++.+...+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999999999 9999999999999999999999999999999999998876554
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.87 E-value=5.9e-21 Score=195.51 Aligned_cols=234 Identities=13% Similarity=0.069 Sum_probs=202.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC----
Q 004753 35 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---- 110 (732)
Q Consensus 35 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 110 (732)
+++.++.+|.++...|++++|+..|+++++.+|++...+..++ .++...|++++|+..++++++ .+.+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~-------~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~ 73 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRA-------VCYYELAKYDLAQKDIETYFS-KVNATKAK 73 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHH-------HHHHHTTCHHHHHHHHHHHHT-TSCTTTCC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHh-ccCchhHH
Confidence 3567889999999999999999999999999999876655544 455556799999999999999 4433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 190 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 190 (732)
..++..+|.++...|++++|+++++++++.+|.+..++..+|.++...|++++|+.+++++++.+|.++.++.++|....
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999995555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC---CCCh---hHHHHHHHHHhhhc
Q 004753 191 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS---ISLAIDAYEQCLKID---PDSR---NAGQNRLLAMNYIN 261 (732)
Q Consensus 191 ~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~---~~eA~~~~~~al~l~---p~~~---~a~~~~~la~~~~~ 261 (732)
..+++++|++.|+++++.+|++..++..+|.++..+|+ +++|+..|++++++. |+.. .......++..|..
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999 999999999999986 4321 12234457788888
Q ss_pred cCCcHHHHHHHHHHH
Q 004753 262 EGHDDKLFEAHRDWG 276 (732)
Q Consensus 262 ~~~~~~a~~~~~~~~ 276 (732)
.|+.+++.+.+++..
T Consensus 234 ~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 234 NRDKVKADAAWKNIL 248 (272)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 999998887666543
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=6.9e-21 Score=195.02 Aligned_cols=230 Identities=17% Similarity=0.135 Sum_probs=202.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhH
Q 004753 12 YSELMQYDTALGCYEKAALER----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 87 (732)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 87 (732)
+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+.+|+++++..|++...+.. +|.++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------la~~~ 87 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY-------LGIYL 87 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH-------HHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHH-------HHHHH
Confidence 345689999999999999973 4568899999999999999999999999999999998766555 45555
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 88 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 167 (732)
Q Consensus 88 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (732)
...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|++......++.. ...|++++|+..
T Consensus 88 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 5577999999999999999999999999999999999999999999999999999998776666644 667999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 168 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 168 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
+++++...|.+...+. ++.++...++.++|+..+++++...|. +..++..+|.+|...|++++|+.+|+++++++
T Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999988866654 777788889999999999999887664 36889999999999999999999999999999
Q ss_pred CCChhHH
Q 004753 244 PDSRNAG 250 (732)
Q Consensus 244 p~~~~a~ 250 (732)
|++....
T Consensus 246 p~~~~~~ 252 (275)
T 1xnf_A 246 VHNFVEH 252 (275)
T ss_dssp CTTCHHH
T ss_pred chhHHHH
Confidence 9875543
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=3e-20 Score=193.56 Aligned_cols=242 Identities=11% Similarity=-0.018 Sum_probs=207.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh
Q 004753 10 VVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 88 (732)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 88 (732)
...+..|+|++|+..+++....+|++ .++...++.+|..+|++++|+..++.. +|.. ..++..++..+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-------~~a~~~la~~~~ 76 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-------LQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-------HHHHHHHHHHHc
Confidence 45678999999999999987777776 468888999999999999999877652 2221 234555677777
Q ss_pred hcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 89 LEGDINQGVAYYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 166 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (732)
..++.++|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |.+..++..+|.++..+|++++|++
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888999999999999976 599999999999999999999999999998 8899999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 167 CYQMALSIKPNFSQSLNNLG--VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 167 ~~~~al~~~p~~~~~~~~la--~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
.++++++.+|++.......+ .++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|
T Consensus 152 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999865444333 3334458999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhhccCCcHHH
Q 004753 245 DSRNAGQNRLLAMNYINEGHDDKL 268 (732)
Q Consensus 245 ~~~~a~~~~~la~~~~~~~~~~~a 268 (732)
++..++.++. ..+...|+..++
T Consensus 232 ~~~~~l~~l~--~~~~~~g~~~ea 253 (291)
T 3mkr_A 232 GHPETLINLV--VLSQHLGKPPEV 253 (291)
T ss_dssp TCHHHHHHHH--HHHHHTTCCHHH
T ss_pred CCHHHHHHHH--HHHHHcCCCHHH
Confidence 9999988754 445556776553
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=211.12 Aligned_cols=244 Identities=26% Similarity=0.313 Sum_probs=212.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 75 (732)
+.+++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++++.+.... ...
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 125 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVG 125 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccc
Confidence 467899999999999999999999999876 3445779999999999999999999999999998765432 234
Q ss_pred HHHHHHHhhhhHhhcCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHH
Q 004753 76 MAIALTDLGTKVKLEGD--------------------INQGVAYYKKALYY------NWHYADAMYNLGVAYGEMLKFDM 129 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~ 129 (732)
.+.++..+|.++...|+ +++|+.++++++++ .+....++..+|.++...|++++
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 205 (406)
T 3sf4_A 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 205 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHH
T ss_pred hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHH
Confidence 46678888888888889 99999999999887 23345689999999999999999
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 004753 130 AIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDA 197 (732)
Q Consensus 130 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~e 197 (732)
|+.++++++++.+.. ..++.++|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++
T Consensus 206 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH
Confidence 999999999885543 3489999999999999999999999999887655 6789999999999999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 198 AAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 198 A~~~l~~al~~~p~~------~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
|+.+++++++..+.. ..++..+|.+|...|++++|+.+|++++++.+..
T Consensus 286 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999885433 6788999999999999999999999999885543
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=7.9e-20 Score=191.93 Aligned_cols=223 Identities=9% Similarity=0.061 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHh
Q 004753 19 DTALGCYEKAALERPMYAEAYCNMGVIYKN-------RGDL-------ESAIACYERCLA-VSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~l 83 (732)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ +.|++...+..++..+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~--- 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE--- 109 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH---
Confidence 789999999999999999999999999874 5885 999999999999 7999877666655544
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 161 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~ 161 (732)
...|++++|...|+++++..|.+.. +|..+|.++...|++++|.+.|+++++..|.+..++...+.+... .|++
T Consensus 110 ----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ----ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp ----HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred ----HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 4467999999999999999999887 999999999999999999999999999999998888877766543 7999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP-TYAEAYNNLGVLYRDAGSISLAIDAYE 237 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p-~~~~~~~~La~~~~~~g~~~eA~~~~~ 237 (732)
++|+.+|+++++.+|+++.++..++.++...|++++|+..|++++.. .| +...+|..++..+...|++++|...++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 45 478899999999999999999999999
Q ss_pred HHHhhCCCChh
Q 004753 238 QCLKIDPDSRN 248 (732)
Q Consensus 238 ~al~l~p~~~~ 248 (732)
++++..|++..
T Consensus 266 ~a~~~~p~~~~ 276 (308)
T 2ond_A 266 RRFTAFREEYE 276 (308)
T ss_dssp HHHHHTTTTTS
T ss_pred HHHHHcccccc
Confidence 99999998654
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=5.8e-21 Score=206.86 Aligned_cols=241 Identities=13% Similarity=0.132 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
.++.+|..+...|++++|+..|+++++. .++ .+.+++.+|.+|...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3566999999999999999999999986 232 5689999999999999999999999999999777654345668
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC-CCCH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FN-PHCA 145 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~ 145 (732)
.++..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|...|++++|+++++++++ .+ |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 889999999999999999999999999885533 25899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
.++.++|.++..+|++++|+.++++++++. +.....+..++.++...|+ +++|+..+++. ...+....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999884 3333446779999999999 88888888776 33344467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 218 NLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 218 ~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
.+|.+|..+|++++|..+|++++++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987554
No 53
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=1.5e-19 Score=180.46 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
+++++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|+++++.+|++...+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 81 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG----- 81 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH-----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH-----
Confidence 46899999999999999999999999999999 889999999999999999999999999999999997655544
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHH
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYNWHYA-------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNL 151 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 151 (732)
+|.++...|++++|+..++++++.+|++. .++..+|.++...|++++|++.|+++++++|+ +..++.++
T Consensus 82 --l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 82 --KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp --HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred --HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 55555567799999999999999999998 66888888898999999999999999998888 88888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004753 152 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 223 (732)
Q Consensus 152 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~ 223 (732)
|.++...| ...++++..+.+.....+ .+......+.+++|+.+++++++++|++..+...++.+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88886544 445666666666654433 333344556677777778777777777777777666654
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=6.5e-21 Score=200.07 Aligned_cols=244 Identities=26% Similarity=0.303 Sum_probs=207.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 75 (732)
+.+++.+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++++.+.... ...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 121 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVG 121 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chH
Confidence 467889999999999999999999999886 4455779999999999999999999999999998665432 223
Q ss_pred HHHHHHHhhhhHhhcCC--------------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHH
Q 004753 76 MAIALTDLGTKVKLEGD--------------------INQGVAYYKKALYYN------WHYADAMYNLGVAYGEMLKFDM 129 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~ 129 (732)
.+.++..+|.++...|+ +++|+.++++++... +....++..+|.++...|++++
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 46677788888888889 999999999998762 3335689999999999999999
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 004753 130 AIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDA 197 (732)
Q Consensus 130 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~e 197 (732)
|+.+++++++..+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++
T Consensus 202 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999875432 3489999999999999999999999999886654 6688999999999999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 198 AAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 198 A~~~l~~al~~~p~~------~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
|+.+++++++..+.. ..++..+|.+|...|++++|..++++++++.++.
T Consensus 282 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 282 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999875432 5588899999999999999999999999987753
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=5.8e-20 Score=188.10 Aligned_cols=223 Identities=17% Similarity=0.166 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|++..++..+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----- 117 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR----- 117 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH-----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH-----
Confidence 467899999999999999999999999999999999999999999999999999999999999999987655554
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
|.++...|++++|+.+++++++..|++......++.. ...|++++|+..+++++...|.+...+ .++.++...++.
T Consensus 118 --a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 193 (275)
T 1xnf_A 118 --GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISE 193 (275)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCH
T ss_pred --HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCH
Confidence 4555556799999999999999999998776666544 667999999999999999988876554 477788889999
Q ss_pred HHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 162 DKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
++|+..++++++..|.. ..++..+|.++...|++++|+.+|+++++.+|++... .+.++..+|++++|++.|
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999999998876643 6889999999999999999999999999999977443 477888999999999887
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=199.16 Aligned_cols=240 Identities=19% Similarity=0.261 Sum_probs=195.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PN 68 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 68 (732)
+.+++.+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+++++++.. ++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999984 56678899999999999999999999999999874 32
Q ss_pred CHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 69 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 69 ~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
.. ..+.++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+++++++++.
T Consensus 107 ~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 107 HP----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred Ch----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 335677888899999999999999999999874 455678999999999999999999999999998
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------C------HHHHHHHHHHHHHcCCHHH
Q 004753 141 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------F------SQSLNNLGVVYTVQGKMDA 197 (732)
Q Consensus 141 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g~~~e 197 (732)
.|....++..+|.++...|++++|+.+++++++..+. . ...+..++..+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 6666788999999999999999999999999976332 1 2234445555666777888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 198 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 198 A~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
|+..++++....|....++..+|.+|..+|++++|+++|++++++.|+
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 888999999989999999999999999999999999999999998775
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=5.2e-21 Score=208.57 Aligned_cols=243 Identities=25% Similarity=0.296 Sum_probs=210.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 75 (732)
+.+++.+|.++...|++++|+.+|+++++. .+....++..+|.+|...|++++|+.++++++++.+... ....
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~ 164 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLS 164 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-chHH
Confidence 357899999999999999999999999987 566788999999999999999999999999998854321 1223
Q ss_pred HHHHHHHhhhhHhhcCC-----------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 76 MAIALTDLGTKVKLEGD-----------------INQGVAYYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIV 132 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~-----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~ 132 (732)
.+.++..+|.++...|+ +++|++++++++++. +....++..+|.++...|++++|++
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE 244 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 46677778888888889 999999999998764 2334689999999999999999999
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 004753 133 FYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAE 200 (732)
Q Consensus 133 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 200 (732)
++++++++.+.. ..++.++|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|+.
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (411)
T 4a1s_A 245 HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999986543 3388999999999999999999999999987644 6789999999999999999999
Q ss_pred HHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 201 MIEKAIAANPT------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 201 ~l~~al~~~p~------~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
+++++++..+. ...++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 325 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 325 YHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999987543 2568899999999999999999999999999775
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=2.1e-20 Score=208.57 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 80 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 80 (732)
+.+++.+|.++...|++ ++|+.+|+++++.+|++..+++.+|.+|...|++++|+.+|+++++++|+ ...+..++.++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~ 180 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence 46899999999999999 99999999999999999999999999999999999999999999999998 44544444444
Q ss_pred HHh--hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---CCHHH
Q 004753 81 TDL--GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM--------LKFDMAIVFYELAFHFNP---HCAEA 147 (732)
Q Consensus 81 ~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~ 147 (732)
..+ +......|++++|+.+|+++++++|++..++.++|.+|... |++++|+++|+++++++| +++.+
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 333 11111118999999999999999999999999999999999 999999999999999999 99999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 148 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 205 (732)
Q Consensus 148 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 205 (732)
++++|.++...|++++|++.|+++++++|++..++..++.++...|++++|++.+.+.
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999866543
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=2.2e-20 Score=217.10 Aligned_cols=173 Identities=29% Similarity=0.473 Sum_probs=145.4
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC
Q 004753 31 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 110 (732)
Q Consensus 31 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 110 (732)
..|+++++++++|.+|.++|++++|+++|+++++++|++..++.+++ .++..+|++++|+++|+++++++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg-------~~l~~~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA-------SVLQQQGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45778888888888888888888888888888888888876655544 44444568888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 190 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 190 (732)
..+++++|.++..+|++++|++.|+++++++|++..+++++|.++..+|++++|++.|+++++++|+++.++.++|.++.
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCC
Q 004753 191 VQGKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 191 ~~g~~~eA~~~l~~al~~~p 210 (732)
.+|++++|++.+++++++.|
T Consensus 157 ~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCh
Confidence 88888888888888887644
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=5.3e-19 Score=176.49 Aligned_cols=206 Identities=19% Similarity=0.242 Sum_probs=180.8
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCH
Q 004753 33 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 111 (732)
Q Consensus 33 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 111 (732)
+.++..++.+|.++...|++++|+..|++++++.| .+...+. .+|.++...|++++|+.+|+++++.+|.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAY-------NCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHH-------HHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 45678999999999999999999999999999998 6664443 456666667799999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-------EACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSL 182 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 182 (732)
.++..+|.++...|++++|++.++++++++|++. .++..+|.++...|++++|+..|+++++++|+ ++.++
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 9999999999999999999999999999999998 67999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 183 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 183 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
.++|.++...| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|++..+...
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 99999997655 455677777776665544 3445567788999999999999999999877543
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=3.7e-18 Score=175.35 Aligned_cols=224 Identities=20% Similarity=0.289 Sum_probs=194.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhh----cCCHHHHHHHHHHHHHhC
Q 004753 32 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYN 107 (732)
Q Consensus 32 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 107 (732)
+|.++.+++.+|.++...|++++|+.+|+++++ +++..+ +..+|.++.. .+++++|+.+|+++++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a-------~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSG-------CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHH-------HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 577899999999999999999999999999998 555544 4556666666 889999999999999885
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCH
Q 004753 108 WHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFS 179 (732)
Q Consensus 108 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 179 (732)
++.+++.+|.+|.. .+++++|+++|+++++.+ ++.++.++|.+|.. .+++++|+.+|+++++.. ++
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 89999999999999 999999999999999974 79999999999999 999999999999999876 68
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 180 QSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 180 ~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
.++.++|.++.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++..| ..+..
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 899999999999 99999999999999987 468999999999999 9999999999999999866 44443
Q ss_pred HHHHHHhhhc----cCCcHHHHHHHHHHH
Q 004753 252 NRLLAMNYIN----EGHDDKLFEAHRDWG 276 (732)
Q Consensus 252 ~~~la~~~~~----~~~~~~a~~~~~~~~ 276 (732)
.++..|.. .++.+++.+.+++..
T Consensus 223 --~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 223 --NLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp --HHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred --HHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 46666766 778888777665543
No 62
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=9.6e-20 Score=196.99 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
.++.+|..+...|++++|+..|+++++..+ ..+.+++.+|.+|...|++++|+.++++++++.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 467899999999999999999999998632 25679999999999999999999999999998776543334678
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FNPHCAE 146 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 146 (732)
.++..+|.++...|++++|+++|++++++.+. ...++.++|.+|...|++++|+.+++++++ .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 88999999999999999999999999987431 245889999999999999999999999999 6787889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHH
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNN 218 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~~eA~~~l~~al~~~p~~~~~~~~ 218 (732)
++.++|.++...|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...+.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999843 334566778888888888 88888888772 223344567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 219 LGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 219 La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
+|.+|...|++++|..+|++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 63
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.81 E-value=4.9e-18 Score=176.42 Aligned_cols=242 Identities=11% Similarity=0.004 Sum_probs=217.4
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh
Q 004753 12 YSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 88 (732)
Q Consensus 12 ~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 88 (732)
....|.+ ++|+.++.+++.++|++..+|+..+.++...+ +++++++.+++++..+|++..++.....++..+.....
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcc
Confidence 3455555 69999999999999999999999999999999 99999999999999999999999998888844332221
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------
Q 004753 89 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDRDN------ 160 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------ 160 (732)
..++++++++++.++++.+|.+..+|...+.++...+.++ +++++++++++.+|.+..+|...+.++...++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 2368999999999999999999999999999999999998 99999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~l~~al~~~---p~~~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
++++++++++++..+|++..+|+.++.++...|+..+ ...++++++++. +.++.++..++.+|.+.|+.++|+++|
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999999999999999999999998555 556777777766 888999999999999999999999999
Q ss_pred HHHHh-hCCCChhHHHHH
Q 004753 237 EQCLK-IDPDSRNAGQNR 253 (732)
Q Consensus 237 ~~al~-l~p~~~~a~~~~ 253 (732)
+++.+ .+|-....+..+
T Consensus 282 ~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHTTCGGGHHHHHHH
T ss_pred HHHHhccChHHHHHHHHH
Confidence 99996 799877776544
No 64
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=2.2e-19 Score=187.13 Aligned_cols=219 Identities=15% Similarity=0.152 Sum_probs=177.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHH
Q 004753 17 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 96 (732)
Q Consensus 17 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A 96 (732)
++++|+.+|+++ |.+|...|++++|+.+|++++++.+... .....+.++.++|.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888877776 6788899999999999999998865432 1234467888899999999999999
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHH
Q 004753 97 VAYYKKALYYNWHY------ADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDK 163 (732)
Q Consensus 97 ~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 163 (732)
+.+|++++++.+.. ..++.++|.+|... |++++|+.+|++++++.|.. ..++.++|.++..+|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999987643 45889999999996 99999999999999987654 5678999999999999999
Q ss_pred HHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHH--HcCCH
Q 004753 164 AVECYQMALSIKPNFSQ-------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA-----YNNLGVLYR--DAGSI 229 (732)
Q Consensus 164 A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~-----~~~La~~~~--~~g~~ 229 (732)
|+.+|++++++.|++.. ++.++|.++..+|++++|+.+|+++++++|+.... +..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999887643 67899999999999999999999999998876543 445666664 46789
Q ss_pred HHHHHHHHHHHhhCCCChhHH
Q 004753 230 SLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 230 ~eA~~~~~~al~l~p~~~~a~ 250 (732)
++|+..|++++.++|.+....
T Consensus 257 ~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHhccCCccHHHHHHHH
Confidence 999999999999988764443
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=1.3e-18 Score=177.65 Aligned_cols=210 Identities=12% Similarity=0.065 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
++.++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++..|++... ..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~----~~ 90 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV----PQ 90 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH----HH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh----HH
Confidence 4689999999999999999999999999999998 8999999999999999999999999999999876421 34
Q ss_pred HHHHhhhhHhh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004753 79 ALTDLGTKVKL--------EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 150 (732)
Q Consensus 79 ~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 150 (732)
+++.+|.++.. .|++++|+..|+++++..|++..+...+..+....++ ....++.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 56666777766 7899999999999999999876554443332221111 1234677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCH---H
Q 004753 151 LGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYA---E 214 (732)
Q Consensus 151 la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~~l~~al~~~p~~~---~ 214 (732)
+|.+|...|++++|+..|+++++..|+ .+.++..+|.+|..+ |++++|+..|+++++..|+++ .
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 888888888888888888888888877 456788888888866 788888888888888888774 4
Q ss_pred HHHHHHHHHHHcCCHHHH
Q 004753 215 AYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA 232 (732)
+...++.++..+++++++
T Consensus 234 a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 234 AEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 555666666666665543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=6.1e-18 Score=177.47 Aligned_cols=222 Identities=10% Similarity=0.053 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 004753 53 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI-------NQGVAYYKKALY-YNWHYADAMYNLGVAYGEM 124 (732)
Q Consensus 53 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 124 (732)
++|+..|+++++.+|++...+..++..+...+..+...|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 78999999999999999999999988887655444455664 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 004753 125 LKFDMAIVFYELAFHFNPHCAE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-QGKMDAAAEMI 202 (732)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~l 202 (732)
|++++|.+.|+++++++|.+.. +|.++|.++...|++++|+..|+++++..|....++...+.+... .|++++|++.|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887 999999999999999999999999999999998888877766544 79999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-ChhHHHHHHHHHhhhccCCcHHHHHHHHHHH
Q 004753 203 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI---DPD-SRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 276 (732)
Q Consensus 203 ~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l---~p~-~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~ 276 (732)
+++++.+|+++.++..++.++...|++++|+..|+++++. .|+ ....+.. ++......|+.+++....++..
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~--~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR--FLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHH--HHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999996 443 4444443 3344455688777765555443
No 67
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=2.5e-16 Score=176.37 Aligned_cols=249 Identities=19% Similarity=0.225 Sum_probs=205.7
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHH
Q 004753 2 QPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 73 (732)
Q Consensus 2 a~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 73 (732)
+++++.+|..|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. +..+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 4678999999998 89999999999999876 678999999999999 999999999999998753 44444
Q ss_pred HHHHHHHHHhhhhHhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCH
Q 004753 74 NNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCA 145 (732)
Q Consensus 74 ~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 145 (732)
+.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+++|+++++. .++
T Consensus 115 -------~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 183 (490)
T 2xm6_A 115 -------QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV 183 (490)
T ss_dssp -------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred -------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 445555555 67999999999998875 578899999999988 88999999999999886 578
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 146 EACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 146 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 259 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQF 259 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 899999999998 89999999999999875 568889999999987 88999999999998765 5678899
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhcc-----CCcHHHHHHHH
Q 004753 218 NLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE-----GHDDKLFEAHR 273 (732)
Q Consensus 218 ~La~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~-----~~~~~a~~~~~ 273 (732)
.+|.+|.. .+++++|+.+|+++.+. ++..+..+ ++..|... ++.++++..++
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~--Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYY--LAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHH--HHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHH--HHHHHHcCCCCCcCCHHHHHHHHH
Confidence 99999998 89999999999999865 45555544 44555444 56666655444
No 68
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=2.3e-16 Score=176.71 Aligned_cols=229 Identities=19% Similarity=0.175 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHH
Q 004753 2 QPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 73 (732)
Q Consensus 2 a~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 73 (732)
+.+++.+|.+|.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+++|+++++. .+..++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3466677777776 66777777777776654 356677777777766 66777777777776664 233333
Q ss_pred HHHHHHHH-----------------------------HhhhhHhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 74 NNMAIALT-----------------------------DLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVA 120 (732)
Q Consensus 74 ~~la~~~~-----------------------------~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 120 (732)
..++.+|. .+|.+|.. .+++++|+.+|+++++. .+..+++.+|.+
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 264 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 33333222 23333332 44555555555555433 344555555555
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 121 YGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 191 (732)
Q Consensus 121 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 191 (732)
|.. .+++++|+++|+++.+. .++.+++.+|.++... +++++|+.+|+++.+. .++.+++++|.+|..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFR 340 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Confidence 555 55555555555555543 3455555556555555 5566666666655543 344555666666555
Q ss_pred cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 004753 192 QG---KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKI 242 (732)
Q Consensus 192 ~g---~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~----~g~~~eA~~~~~~al~l 242 (732)
.| ++++|+++|+++++. .++.++++||.+|.. .+++++|+.+|+++.+.
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 44 556666666666554 445666666666666 56666666666666554
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=6.2e-18 Score=161.28 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=165.7
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
..|++++|+++++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+.++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhH
Q 004753 237 EQCLKIDPDSRNA 249 (732)
Q Consensus 237 ~~al~l~p~~~~a 249 (732)
+++++++|++...
T Consensus 168 ~~~~~~~~~~~~~ 180 (186)
T 3as5_A 168 KKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHCCCGG
T ss_pred HHHHHcCCCchhh
Confidence 9999999887543
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.79 E-value=2.7e-17 Score=176.96 Aligned_cols=275 Identities=14% Similarity=0.002 Sum_probs=222.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-----EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 76 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (732)
++++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++++.+..... ...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHH
Confidence 35677899999999999999999999999877542 368899999999999999999999999987655422 234
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----- 143 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 143 (732)
+.++..+|.++...|++++|+.+++++++.. |....++.++|.++...|++++|..+++++++..+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 6677889999999999999999999999874 334567888999999999999999999999998765
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NF-SQSL----NNLGVVYTVQGKMDAAAEMIEKAIAANPTY---- 212 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~-~~~~----~~la~~~~~~g~~~eA~~~l~~al~~~p~~---- 212 (732)
...++.++|.++...|++++|..++++++.+.+ .. .... ..++.++...|++++|..++++++...+..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 356788999999999999999999999988732 22 1211 134566889999999999999998876643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh----hHHHHHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 213 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR----NAGQNRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 213 ~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~----~a~~~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
...+..++.++...|++++|...+++++...+... .......++..+...|+.+++.+..++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999988754322 122344567778888998887776655443
No 71
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=2e-18 Score=201.27 Aligned_cols=187 Identities=13% Similarity=0.002 Sum_probs=170.7
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHH
Q 004753 31 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCL--------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 102 (732)
Q Consensus 31 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (732)
.+|+++.+++..| ...|++++|++.+++++ +.+|++..++..++.++.. .|++++|+..|++
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-------LGDVAKATRKLDD 458 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-------HTCHHHHHHHHHH
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-------cCCHHHHHHHHHH
Confidence 4778888887777 78999999999999999 8889988766665555555 5699999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 004753 103 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 182 (732)
Q Consensus 103 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 182 (732)
+++.+|++..+++++|.++...|++++|++.|+++++++|++..+++++|.++..+|++++ ++.|+++++++|++..++
T Consensus 459 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~ 537 (681)
T 2pzi_A 459 LAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAA 537 (681)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHH
T ss_pred HhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004753 183 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 228 (732)
Q Consensus 183 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~ 228 (732)
+++|.++..+|++++|++.|+++++++|++..+++++|.++...++
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999988666
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=1.5e-18 Score=180.63 Aligned_cols=220 Identities=13% Similarity=0.053 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 76 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (732)
+.|...|.+|...|++++|+..|+++++..+. ...++.++|.+|..+|++++|+.+|++++++.+.... ....
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~ 116 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRG 116 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHH
Confidence 35667788999999999999999999987432 2678999999999999999999999999998765432 2334
Q ss_pred HHHHHHhhhhHhhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q 004753 77 AIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--- 146 (732)
Q Consensus 77 a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 146 (732)
+.++..+|.+|... |++++|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|++++++.|++..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 67788899999996 99999999999999997754 467899999999999999999999999999887643
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 147 ----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGVVYT--VQGKMDAAAEMIEKAIAANPTYAEA 215 (732)
Q Consensus 147 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~eA~~~l~~al~~~p~~~~~ 215 (732)
++.++|.++..+|++++|+.+|+++++++|+.... +..++..+. ..+++++|+..|++++.++|....+
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 68899999999999999999999999999987653 455666554 4578999999999998888877666
Q ss_pred HHHHHHHH
Q 004753 216 YNNLGVLY 223 (732)
Q Consensus 216 ~~~La~~~ 223 (732)
+..+-...
T Consensus 277 ~~~~k~~~ 284 (292)
T 1qqe_A 277 LNKIKESI 284 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 65554443
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.78 E-value=3e-18 Score=199.74 Aligned_cols=181 Identities=14% Similarity=-0.036 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 75 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 75 (732)
+++..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..++.+
T Consensus 396 a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 396 ASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp HHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH
Confidence 344444 67899999999999999 8999999999999999999999999999999999999999877666
Q ss_pred HHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004753 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 155 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (732)
++.++.. .|++++|++.|+++++++|++..+++++|.++...|++++ ++.|+++++++|++..+++++|.++
T Consensus 473 lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 473 RAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp HHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5555544 6699999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 004753 156 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 195 (732)
Q Consensus 156 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 195 (732)
..+|++++|++.|+++++++|++..++.++|.++...++.
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999886663
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=2e-18 Score=176.63 Aligned_cols=227 Identities=19% Similarity=0.233 Sum_probs=184.2
Q ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHH
Q 004753 13 SELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIA 79 (732)
Q Consensus 13 ~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~ 79 (732)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++++. ++.+ ..+.+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 87 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----AVAAT 87 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----HHHHH
Confidence 3467888899999988873 35568899999999999999999999999999884 3333 34567
Q ss_pred HHHhhhhHhhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Q 004753 80 LTDLGTKVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPH 143 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 143 (732)
+..+|.++...|++++|+.+++++++. +|....++.++|.++...|++++|+.+++++++. .|.
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 888899999999999999999999988 4666789999999999999999999999999998 666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHh
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGK------MDAAAEMIEKAIAA 208 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~------~~eA~~~l~~al~~ 208 (732)
...++.++|.++..+|++++|+.+++++++. .+.....+..++..+...+. +.++...++.....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 7889999999999999999999999999987 44455577777777665444 33444444443334
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 209 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 243 (732)
Q Consensus 209 ~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~ 243 (732)
.|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45667889999999999999999999999999764
No 75
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=9e-19 Score=163.15 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=110.9
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.++.++|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56666677778888888888877777777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 228 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~-l~~al~~~p~~~~~~~~La~~~~~~g~ 228 (732)
+|+.+|+++++++|+++.++.++|.++...|++++|.+. ++++++++|+++.++..++.++..+|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888888888888888888888877877766554 477888888887777777777776664
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.77 E-value=1e-17 Score=181.24 Aligned_cols=237 Identities=14% Similarity=0.115 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC-------
Q 004753 38 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------- 110 (732)
Q Consensus 38 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------- 110 (732)
.++.+|.++...|++++|+.+|++++++..... .....+.++..+|.+|...|++++|+.++++++++.+..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVK-DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 445599999999999999999999999743322 122457788899999999999999999999999884433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCC
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALS-----IK-PNF 178 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~ 178 (732)
..++.++|.+|...|++++|++++++++++.+.. ..++.++|.++..+|++++|+.+++++++ .+ |..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 4589999999999999999999999999885432 35899999999999999999999999999 45 777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChhHH
Q 004753 179 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-----PTYAEAYNNLGVLYRDAGS---ISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 179 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~~La~~~~~~g~---~~eA~~~~~~al~l~p~~~~a~ 250 (732)
..++.++|.++..+|++++|+.++++++++. +.....+..++.+|...|+ +++|+.++++. ...| ....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~--~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA--DLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH--HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH--HHHH
Confidence 8899999999999999999999999999884 3333446779999999999 88888888876 2222 2223
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHHH
Q 004753 251 QNRLLAMNYINEGHDDKLFEAHRDWGKR 278 (732)
Q Consensus 251 ~~~~la~~~~~~~~~~~a~~~~~~~~~~ 278 (732)
....++..|...|+.+++.+.++.....
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3446788899999999988877665443
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=3e-17 Score=167.47 Aligned_cols=202 Identities=18% Similarity=0.144 Sum_probs=168.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCC
Q 004753 29 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 108 (732)
Q Consensus 29 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 108 (732)
....|.++..++.+|..++..|++++|+..|+++++..|++.. ...+++.+|.++...|++++|+..|+++++..|
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW----AADAQFYLARAYYQNKEYLLAASEYERFIQIYQ 83 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc----hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence 4567889999999999999999999999999999999998831 133455666667778899999999999999988
Q ss_pred CC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 109 HY---ADAMYNLGVAYGE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 109 ~~---~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
++ ..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....++
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----------------- 146 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----------------- 146 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------
Confidence 54 6789999999999 9999999999999999999886655444333222111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCC
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNLGVLYRDA----------GSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~~~~La~~~~~~----------g~~~eA~~~~~~al~l~p 244 (732)
....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 1334789999999999999999999999999998 567999999999977 999999999999999999
Q ss_pred CChhHHH
Q 004753 245 DSRNAGQ 251 (732)
Q Consensus 245 ~~~~a~~ 251 (732)
++..+..
T Consensus 227 ~~~~~~~ 233 (261)
T 3qky_A 227 DSPLLRT 233 (261)
T ss_dssp TCTHHHH
T ss_pred CChHHHH
Confidence 9876543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=4.1e-17 Score=155.55 Aligned_cols=166 Identities=18% Similarity=0.258 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 83 (732)
.++.+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+...+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------- 82 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL------- 82 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-------
Confidence 4455555555555555555555555555555555555555555555555555555555555555443332222
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 163 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 163 (732)
|.++...|++++|+++++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 22222233455555555555554444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhhCC
Q 004753 164 AVECYQMALSIKP 176 (732)
Q Consensus 164 A~~~~~~al~~~p 176 (732)
|+.+++++++..|
T Consensus 163 A~~~~~~~~~~~~ 175 (186)
T 3as5_A 163 ALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC
Confidence 4444444444433
No 79
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=3.8e-16 Score=176.73 Aligned_cols=271 Identities=13% Similarity=0.042 Sum_probs=185.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-- 80 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-- 80 (732)
++|..++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|+++++..|+ ...+..++...
T Consensus 14 ~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 14 DAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHH
Confidence 578888874 78999999999999999999999999999999999999999999999999999994 44544433211
Q ss_pred ---------------------------------HHhhhhHh---------hcCCHHHHHHHHHHHHHhCCCCH--HHHHH
Q 004753 81 ---------------------------------TDLGTKVK---------LEGDINQGVAYYKKALYYNWHYA--DAMYN 116 (732)
Q Consensus 81 ---------------------------------~~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~~--~~~~~ 116 (732)
...+.... ..|++++|...|+++++ .|... ..|..
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~ 170 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRD 170 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHH
Confidence 00111111 14677777777877777 34431 11111
Q ss_pred HHHH---------------------------------------------------------------HHH------cCC-
Q 004753 117 LGVA---------------------------------------------------------------YGE------MLK- 126 (732)
Q Consensus 117 la~~---------------------------------------------------------------~~~------~g~- 126 (732)
.... ... .++
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~ 250 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQ 250 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCS
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcc
Confidence 1000 000 011
Q ss_pred ---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHH
Q 004753 127 ---FDMAIVFYELAFHFNPHCAEACNNLGVIYKD-------RDNLD-------KAVECYQMALS-IKPNFSQSLNNLGVV 188 (732)
Q Consensus 127 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~ 188 (732)
.++++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++..++..++.+
T Consensus 251 ~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 251 TLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 1255667888888888888888888877765 67765 77888888886 677778888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHH
Q 004753 189 YTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 267 (732)
Q Consensus 189 ~~~~g~~~eA~~~l~~al~~~p~~~-~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~ 267 (732)
+...|++++|...|+++++..|.++ .+|..++.++...|++++|++.|+++++..|.....+..... +.+...|+.++
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~-~~~~~~~~~~~ 409 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL-MEYYCSKDKSV 409 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH-HHHHHTCCHHH
T ss_pred HHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH-HHHHHcCChhH
Confidence 8888888888888888888777764 577777777777777777777777777776665444332211 11223566666
Q ss_pred HHHHHHHHHH
Q 004753 268 LFEAHRDWGK 277 (732)
Q Consensus 268 a~~~~~~~~~ 277 (732)
+...++...+
T Consensus 410 A~~~~e~al~ 419 (530)
T 2ooe_A 410 AFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555544433
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.75 E-value=1.5e-17 Score=163.89 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=147.6
Q ss_pred HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004753 80 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFDMAIVFYELAFHFNPH 143 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~p~ 143 (732)
+...|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++++|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 4456666777889999999999999999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
+..++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+ .+++...+++++...| ...+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987764 4566777777754332 2346788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 222 LYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 222 ~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
++...|++++|+.+|+++++++|+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999743
No 81
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=8.2e-17 Score=160.63 Aligned_cols=207 Identities=13% Similarity=0.090 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH---HHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKNN 75 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 75 (732)
+++++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++..|++.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4689999999999999999999999999998876 479999999999999999999999999999999864 4444
Q ss_pred HHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004753 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 155 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (732)
++.++..++ .. ....+..++..+...|++++|+..|+++++..|++..+...+..+.
T Consensus 84 ~g~~~~~~~-------~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 84 RGLTNMALD-------DS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHH-------C------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHhhh-------hh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH
Confidence 444444433 11 1123445677777888999999999999999998865543322211
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHH
Q 004753 156 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLA 232 (732)
Q Consensus 156 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~---~~~~~La~~~~~~g~~~eA 232 (732)
...+ ........+|.+|...|++++|+..|+++++..|+++ ++++.+|.+|.++|++++|
T Consensus 141 ~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 FLKD-----------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHH-----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH-----------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 1110 0122346789999999999999999999999999886 6799999999999999999
Q ss_pred HHHHHHHHhhCCCChh
Q 004753 233 IDAYEQCLKIDPDSRN 248 (732)
Q Consensus 233 ~~~~~~al~l~p~~~~ 248 (732)
++.++++....|++.+
T Consensus 204 ~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 204 EKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHhhCCCchh
Confidence 9999999998887654
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.75 E-value=3e-17 Score=161.70 Aligned_cols=168 Identities=17% Similarity=0.059 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHCCCHHHHHHHHHHHHhh
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN----------------MGVIYKNRGDLESAIACYERCLAV 65 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----------------lg~~~~~~g~~~~A~~~~~~al~~ 65 (732)
++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888777 555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCC
Q 004753 66 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAIVFYELAFHFNPH 143 (732)
Q Consensus 66 ~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~ 143 (732)
+|++..++..++.++ ...|++++|+.+|+++++++|++..+++++|.+|...|+ .+.+...+++++...|.
T Consensus 84 ~p~~~~~~~~lg~~~-------~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (208)
T 3urz_A 84 APNNVDCLEACAEMQ-------VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156 (208)
T ss_dssp CTTCHHHHHHHHHHH-------HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH
T ss_pred CCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch
Confidence 554443333322222 223345555555555555555555555555544443332 22333333333321111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
..+++.+|.++...|++++|+.+|+++++++|+
T Consensus 157 -~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 157 -QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 123334444444444444444444444444443
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=175.16 Aligned_cols=243 Identities=21% Similarity=0.246 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh----
Q 004753 32 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY---- 106 (732)
Q Consensus 32 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 106 (732)
+|....++..+|.++...|++++|+.++++++++..... ......+.++..+|.++...|++++|+.+++++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999999998622100 001123566777888888899999999999999987
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 107 ----NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 107 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
.+....++..+|.++...|++++|+.++++++++. |....++.++|.++...|++++|+.+++++++.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35556789999999999999999999999999874 555778999999999999999999999999998
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------C------HHHHHHHHHHHHHcCCHHH
Q 004753 175 --------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------Y------AEAYNNLGVLYRDAGSISL 231 (732)
Q Consensus 175 --------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---------~------~~~~~~La~~~~~~g~~~e 231 (732)
.|....++..+|.++...|++++|+++++++++..+. . ...+..++..+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 6666778999999999999999999999999986332 1 2344455566667777888
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHH
Q 004753 232 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 276 (732)
Q Consensus 232 A~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~ 276 (732)
|...++++....|....++. .++..|...|+.+++.+.+++..
T Consensus 263 a~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLK--NLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CC---------CHHHHHHHH--HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCchHHHHHH--HHHHHHHHCCCHHHHHHHHHHHH
Confidence 88899999888776655544 46788888999998887766543
No 84
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=1.2e-15 Score=159.18 Aligned_cols=234 Identities=12% Similarity=0.046 Sum_probs=201.4
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 13 SELMQYD-TALGCYEKAALERPMYAEAYCNMGVIYKNRGD----------LESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 13 ~~~g~~~-~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
...|+++ +|+.++.+++..+|++..+|+..+.++...+. +++++.++++++..+|++..+|.....++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 4566665 79999999999999999999999999988776 689999999999999999999988888887
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-- 158 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-- 158 (732)
.++ ...+++++.++.++++.+|.+..+|...+.+....|. +++++++++++++.+|.+..+|.+++.++...
T Consensus 120 ~l~-----~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 120 RLP-----EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HCS-----SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred ccC-----cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence 765 1258999999999999999999999999999999998 69999999999999999999999999998877
Q ss_pred ------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHH
Q 004753 159 ------------DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-----------GKMDAAAEMIEKAIAANPTYAEA 215 (732)
Q Consensus 159 ------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~eA~~~l~~al~~~p~~~~~ 215 (732)
+.++++++++.+++..+|++..+|+.+..++... +.+++++++++++++..|++...
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 5689999999999999999999998777666655 46899999999999999999666
Q ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 216 YNNLGVLYR---DAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 216 ~~~La~~~~---~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
+..++.+.. ..|..++...++.+.+++||.....+.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 555554433 357888999999999999997655443
No 85
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.6e-16 Score=178.10 Aligned_cols=220 Identities=9% Similarity=0.056 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHh
Q 004753 19 DTALGCYEKAALERPMYAEAYCNMGVIYKN-------RGDLE-------SAIACYERCLA-VSPNFEIAKNNMAIALTDL 83 (732)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~l 83 (732)
.+++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++...+..++..+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~--- 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE--- 331 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH---
Confidence 478899999999999999999999999986 79987 99999999997 7998877666555444
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL 161 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~ 161 (732)
...|++++|...|+++++..|.+. .+|..++.++...|++++|.+.|+++++..|.....+...+.+ +...|++
T Consensus 332 ----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 332 ----ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp ----HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred ----HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence 446799999999999999999985 6999999999999999999999999999998887777776665 3468999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA----EAYNNLGVLYRDAGSISLAIDAYE 237 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~----~~~~~La~~~~~~g~~~eA~~~~~ 237 (732)
++|..+|+++++..|+++.++..++.++...|+.++|...|++++...|.++ .+|..........|+.+.+..+++
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876554 388888888999999999999999
Q ss_pred HHHhhCCC
Q 004753 238 QCLKIDPD 245 (732)
Q Consensus 238 ~al~l~p~ 245 (732)
++++..|+
T Consensus 488 r~~~~~p~ 495 (530)
T 2ooe_A 488 RRFTAFRE 495 (530)
T ss_dssp HHHHHTHH
T ss_pred HHHHHCch
Confidence 99999985
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.72 E-value=9.2e-18 Score=156.28 Aligned_cols=147 Identities=11% Similarity=0.071 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhh
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 86 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 86 (732)
.||.++..+|++++|+..+++++..+|+++.+++.+|.+|...|++++|+++|+++++++|++..++..++.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~------- 74 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLL------- 74 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------
Confidence 3566666677777777777777777777777777777777777777777777777777777766554443333
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 004753 87 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF-YELAFHFNPHCAEACNNLGVIYKDRDN 160 (732)
Q Consensus 87 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 160 (732)
+...|++++|+..|+++++++|+++.+++++|.+|...|++++|.+. ++++++++|+++.++..++.++..+|+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 33345777777777777777777777777777777777766655543 466777777776666666666665553
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.71 E-value=5e-16 Score=167.70 Aligned_cols=236 Identities=16% Similarity=0.130 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC-------C
Q 004753 38 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------Y 110 (732)
Q Consensus 38 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~ 110 (732)
.++.+|..+...|++++|+.+|++++++.+.... ....+.++..+|.+|...|++++|+.+++++++..+. .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 5678899999999999999999999988654321 2355788899999999999999999999999987543 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALS-----IKPNFS 179 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~ 179 (732)
..++.++|.+|...|++++|++++++++++.+ ....++.++|.++..+|++++|+.+++++++ .+|...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 45788999999999999999999999998733 1256889999999999999999999999999 677778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChhHHH
Q 004753 180 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAGS---ISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 180 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-----~~~~~~~~La~~~~~~g~---~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
.++.++|.++..+|++++|+.++++++++.+ .....+..++.+|...++ +.+|+.++++.- ..| .....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~--~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHA--YIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHH--HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-Chh--HHHHH
Confidence 8999999999999999999999999999843 345567788889999998 888888888731 111 12223
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHH
Q 004753 252 NRLLAMNYINEGHDDKLFEAHRDWGK 277 (732)
Q Consensus 252 ~~~la~~~~~~~~~~~a~~~~~~~~~ 277 (732)
...++..|...|+.+++.+.++....
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34688889999999998887766544
No 88
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=3.7e-16 Score=173.07 Aligned_cols=233 Identities=16% Similarity=0.135 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhhCCCCHHHHH
Q 004753 3 PAYYNLGVVYSELMQY---DTALGCYEKAALERPMYAEAYCNMGVIYKNRG-----DLESAIACYERCLAVSPNFEIAKN 74 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~ 74 (732)
++++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++...+ ++++|+.+|+++++..+.. ++.
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~ 110 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLI 110 (452)
T ss_dssp TGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHH
Confidence 4566677777777777 7777777777755 5667888888666665 7788888888887754332 344
Q ss_pred HHHHHHH----------------------------HhhhhHhhcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 75 NMAIALT----------------------------DLGTKVKLEG----DINQGVAYYKKALYYNWHYADAMYNLGVAYG 122 (732)
Q Consensus 75 ~la~~~~----------------------------~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 122 (732)
.++.+|. .+|.+|...+ +.+++..+++.+...+| .+++.+|.+|.
T Consensus 111 ~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~ 187 (452)
T 3e4b_A 111 PLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQ 187 (452)
T ss_dssp HHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHH
Confidence 4443332 2233333333 22223333333332222 25556666665
Q ss_pred HcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HHc
Q 004753 123 EML---KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR----DNLDKAVECYQMALSIKPNFSQSLNNLGVV-Y--TVQ 192 (732)
Q Consensus 123 ~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~ 192 (732)
..| ++++|+++|+++.+..+.....++++|.+|... +++++|+.+|+++. |.++.+++++|.+ + ...
T Consensus 188 ~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 188 KKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGG
T ss_pred HcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCC
Confidence 555 556666666666666555555555566555443 45566666666554 5555566666655 2 345
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 193 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-----SISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g-----~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
+++++|+++|+++.+. .++.++++||.+|. .| ++++|+.+|+++. +++..+..+
T Consensus 265 ~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~ 323 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYY 323 (452)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHH
Confidence 5566666666665543 25555556665555 33 5666666666555 555555444
No 89
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=2.3e-15 Score=166.69 Aligned_cols=258 Identities=14% Similarity=0.056 Sum_probs=202.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGC----YEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKN 74 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~----~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~ 74 (732)
+++++.+|.+|...+.++++... ++.+...+| .+++.+|.+|...| ++++|+.+|+++.+..+.....+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~ 217 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVD 217 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46788899999988855554444 444444444 49999999999999 999999999999999998876555
Q ss_pred HHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004753 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYELAFHFNPHCAEACNNL 151 (732)
Q Consensus 75 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 151 (732)
+++.+|... ....+++++|+.+|+++. |.++.+++++|.+ + ...+++++|+++|+++.+.. ++.+++++
T Consensus 218 ~Lg~~y~~g---~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~L 289 (452)
T 3e4b_A 218 SVARVLGDA---TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLL 289 (452)
T ss_dssp HHHHHHTCG---GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHhCC---CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 555554221 122379999999999998 8999999999998 4 57899999999999998654 79999999
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 152 GVIYKDRD-----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 222 (732)
Q Consensus 152 a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~La~~ 222 (732)
|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+ ..++.+.++||.+
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHH
Confidence 99998 55 9999999999998 8999999999999887 4599999999999976 4567889999999
Q ss_pred HHH----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHHH
Q 004753 223 YRD----AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 278 (732)
Q Consensus 223 ~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 278 (732)
|.. ..++.+|..+|+++.+..+ ..+...+......+...+..++.+..++|.+.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 985 5699999999999998754 44444433333333333444555555666554
No 90
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.70 E-value=5.3e-16 Score=169.87 Aligned_cols=337 Identities=12% Similarity=0.089 Sum_probs=218.9
Q ss_pred CccccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChh--hHHHHHHHhhhCCeEEEccCCCH---------
Q 004753 298 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAK--TIRFREKVMKKGGIWRDIYGIDE--------- 366 (732)
Q Consensus 298 ~lrIGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~--------- 366 (732)
+.+|.+++..+....+...+..+.......+++|.+++.....+.. ...+..... +.. ...+..
T Consensus 40 ~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~ 114 (416)
T 2x6q_A 40 GRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQ--GNE---SLKLTEEMKELYLNV 114 (416)
T ss_dssp TCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHT--TCC---SCCCCHHHHHHHHHH
T ss_pred ccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeec--ccc---cccccHHHHHHHHHH
Confidence 4577778777655566666666666666667888776654322111 111111111 000 111111
Q ss_pred -HHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCCCCeEEecccCCCCCC----------CCCccEEEecCCCCCcCccc
Q 004753 367 -KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG----------LPTIDYRITDSLADPPETKQ 435 (732)
Q Consensus 367 -~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~p~t~g----------~~~~Dy~~~d~~~~p~~~~~ 435 (732)
..+.+.|+..++||++-.+.++. .+..++.+..|+.++..+...... +...|.++.. .......
T Consensus 115 ~~~~~~~l~~~~~Dvv~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~---~s~~~~~ 189 (416)
T 2x6q_A 115 NRENSKFIDLSSFDYVLVHDPQPA--ALIEFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFH---LPEYVQP 189 (416)
T ss_dssp HHHHHHSSCGGGSSEEEEESSTTG--GGGGGSCCCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEES---SGGGSCT
T ss_pred HHHHHHHHhhcCCCEEEEeccchh--hHHHHHHhcCCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEe---chHHHHh
Confidence 12445566779999976443332 122222233788887776433211 1234555421 1112222
Q ss_pred CCc-cceEEcCCCccccCCCCCCC-CC--------CCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEE
Q 004753 436 KHV-EELIRLPECFLCYTPSPEAG-PV--------CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLV 503 (732)
Q Consensus 436 ~~~-E~l~~lp~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~ 503 (732)
.+. +++..+|+.. .+....+ +. +...+++++.+++++++++ .|..+.++++|..+.+..|+.+|+
T Consensus 190 ~~~~~~~~vi~ngv---d~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~ 266 (416)
T 2x6q_A 190 ELDRNKAVIMPPSI---DPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLL 266 (416)
T ss_dssp TSCTTTEEECCCCB---CTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEE
T ss_pred hCCccceEEeCCCC---ChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEE
Confidence 333 6788888742 1111100 00 0112455677889999987 889999999999999999999999
Q ss_pred EecCCCCC-HHHHHHHHHHHHHcCCCCCcEEEcCCcCC--cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeec
Q 004753 504 VKCKPFCC-DSVRHRFLSTLEQLGLESLRVDLLPLILL--NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 579 (732)
Q Consensus 504 l~~~~~~~-~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~--~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~ 579 (732)
++|++... +...+.+++..++.|+ .++|.|+|+++. .++....|+.+|+++-|+.+ +.|++++|||++|+|||+.
T Consensus 267 i~G~g~~~~~~~~~~l~~~~~~~~~-~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~ 345 (416)
T 2x6q_A 267 LVGVMAHDDPEGWIYFEKTLRKIGE-DYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGR 345 (416)
T ss_dssp EEECCCTTCHHHHHHHHHHHHHHTT-CTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEE
T ss_pred EEecCcccchhHHHHHHHHHHHhCC-CCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEc
Confidence 99987432 3446778888889999 589999996542 45788899999999999988 5589999999999999984
Q ss_pred CCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 580 AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 580 ~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
... |..-+..-|-.++++.|.+++++...++..|++.++++++..++..... |+++.+++.++++|+++
T Consensus 346 ~~~------g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 346 AVG------GIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRKN--FIITKHMERYLDILNSL 414 (416)
T ss_dssp SCH------HHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHTC
T ss_pred cCC------CChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHh
Confidence 422 1111222255677777999999999999999999999999988876533 89999999999999865
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.70 E-value=7.3e-16 Score=165.71 Aligned_cols=242 Identities=12% Similarity=-0.001 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH-HHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA-KNN 75 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~ 75 (732)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.+++++++..+..... ...
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 367889999999999999999999999865432 3457889999999999999999999999875421110 012
Q ss_pred HHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-HHH
Q 004753 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C-AEA 147 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~ 147 (732)
.+.++..+|.++...|++++|..++++++...+. ...++..+|.++...|++++|..++++++.+.+. . ...
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 3456677888888899999999999999998775 3467889999999999999999999999987322 2 121
Q ss_pred H----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q 004753 148 C----NNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YA 213 (732)
Q Consensus 148 ~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------~~ 213 (732)
. ..++.++...|++++|..++++++...+.. ...+..++.++...|++++|+..+++++...+. ..
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 1 134566889999999999999998876643 336788999999999999999999999887432 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 214 ~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
.++..+|.++...|++++|...+++++.+.+
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 5788899999999999999999999998755
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=1.5e-16 Score=166.74 Aligned_cols=204 Identities=17% Similarity=0.140 Sum_probs=161.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCC
Q 004753 14 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 92 (732)
Q Consensus 14 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~ 92 (732)
..|++++|.++++++.+..+.. ++. .+++++|..+|.++ +.+|...|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g~ 51 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA---------------------AVAFKNAKQ 51 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH---------------------HHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH---------------------HHHHHHcCC
Confidence 3578889999999988766542 111 47788888887775 234445678
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCC
Q 004753 93 INQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDN 160 (732)
Q Consensus 93 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 160 (732)
+++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+. ...++.++|.+|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 889999888888875432 457888899999999999999999999887432 24678889999988 99
Q ss_pred HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 004753 161 LDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGS 228 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~La~~~~~~g~ 228 (732)
+++|+.+|++++++.+.. ..++.++|.++..+|++++|+.+|++++++.+.+ ..++..+|.++..+|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 999999999999886543 5688899999999999999999999999875533 3477889999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHH
Q 004753 229 ISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 229 ~~eA~~~~~~al~l~p~~~~a~ 250 (732)
+++|+.+|++++ ++|+.....
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHHHHHHHHh-CCCCCCCCH
Confidence 999999999999 999765543
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=2.4e-16 Score=141.97 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=57.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004753 106 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 185 (732)
Q Consensus 106 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 185 (732)
++|+.++++.++|..+++.|++++|++.|+++++++|.++.++.++|.++..+|++++|+..|+++++++|++..++.++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34444444444455555555555555555555555554444444555555445555555555554444444444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 186 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 186 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
|.++..+|++++|++.|+++++++|++.+++..++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 94
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.69 E-value=2.5e-16 Score=170.73 Aligned_cols=335 Identities=14% Similarity=0.079 Sum_probs=216.9
Q ss_pred CccccccCCCcc--cChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC---C----HHH
Q 004753 298 PLVIGYVSPDYF--THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI---D----EKK 368 (732)
Q Consensus 298 ~lrIGyvS~d~~--~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~----~~~ 368 (732)
+.+|.+++..|. ...+...+..+..... +.+|.+++....... ...+.. ..+..+..+... . ...
T Consensus 4 ~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~--g~~v~v~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 77 (394)
T 3okp_A 4 SRKTLVVTNDFPPRIGGIQSYLRDFIATQD--PESIVVFASTQNAEE-AHAYDK---TLDYEVIRWPRSVMLPTPTTAHA 77 (394)
T ss_dssp CCCEEEEESCCTTSCSHHHHHHHHHHTTSC--GGGEEEEEECSSHHH-HHHHHT---TCSSEEEEESSSSCCSCHHHHHH
T ss_pred CceEEEEeCccCCccchHHHHHHHHHHHhc--CCeEEEEECCCCccc-hhhhcc---ccceEEEEccccccccchhhHHH
Confidence 456788887665 3455666666666663 556666655432211 111221 112233333221 1 357
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCchhhhc-cCCCC-eEEecccCCCCCC------------CCCccEEEecCCCCCcCcc
Q 004753 369 VAAMVREDKIDILVELTGHTANNKLGMMA-CQPAP-VQVTWIGYPNTTG------------LPTIDYRITDSLADPPETK 434 (732)
Q Consensus 369 ~~~~i~~d~~Dilvdl~g~t~~~~~~~~a-~r~Ap-vq~~~~g~p~t~g------------~~~~Dy~~~d~~~~p~~~~ 434 (732)
+.+.|+..++||++--...... .+..++ ....| +.+++.|+..... +...|.+++-.-..-....
T Consensus 78 l~~~~~~~~~Dvv~~~~~~~~~-~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 156 (394)
T 3okp_A 78 MAEIIREREIDNVWFGAAAPLA-LMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFK 156 (394)
T ss_dssp HHHHHHHTTCSEEEESSCTTGG-GGHHHHHHTTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCcchHH-HHHHHHHhcCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHH
Confidence 8889999999999743221111 122122 22334 6667776432111 1235777653210000011
Q ss_pred cC--CccceEEcCCCccccCCCCCCCC-----CCCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEe
Q 004753 435 QK--HVEELIRLPECFLCYTPSPEAGP-----VCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVK 505 (732)
Q Consensus 435 ~~--~~E~l~~lp~~~~~~~~~~~~~~-----~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~ 505 (732)
.. ..+++..+|+.. .........+ .+...+++++.+++++++++ .|..+.++++|.++.+..|+.+|+++
T Consensus 157 ~~~~~~~~~~vi~ngv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~ 235 (394)
T 3okp_A 157 SAFGSHPTFEHLPSGV-DVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIV 235 (394)
T ss_dssp HHHCSSSEEEECCCCB-CTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred HhcCCCCCeEEecCCc-CHHHcCCCCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEE
Confidence 11 246788888642 1111100000 01123456777889999987 89999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC--------CCcccHHHhhhcCCCee
Q 004753 506 CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY--------AGTTTTCESLYMGVPCV 577 (732)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~--------~g~~t~~eal~~GvPvv 577 (732)
|.+ +..+.+++.+ .|+ .++|.|.|.++ .++...+|..+|+++-|+.+ +.+++++|||++|+|||
T Consensus 236 G~g----~~~~~l~~~~--~~~-~~~v~~~g~~~-~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI 307 (394)
T 3okp_A 236 GSG----RYESTLRRLA--TDV-SQNVKFLGRLE-YQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVI 307 (394)
T ss_dssp CCC----TTHHHHHHHT--GGG-GGGEEEEESCC-HHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEE
T ss_pred cCc----hHHHHHHHHH--hcc-cCeEEEcCCCC-HHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEE
Confidence 987 4556666655 667 48999999987 68999999999999999986 44889999999999999
Q ss_pred ecCCCcccccchhHHhhhcCCCccccC--CHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 578 TMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 578 t~~g~~~~~r~~~s~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
+.....+..-+. -| .++++. |.+++++...++..|++.+.++++..++.... .|+++.+++.++++|++
T Consensus 308 ~~~~~~~~e~i~------~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~ 378 (394)
T 3okp_A 308 AGTSGGAPETVT------PA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEA--EWSWEIMGERLTNILQS 378 (394)
T ss_dssp ECSSTTGGGGCC------TT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HTBHHHHHHHHHHHHHS
T ss_pred EeCCCChHHHHh------cC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Confidence 965443333222 25 566665 99999999999999999999999999887654 38999999999999987
Q ss_pred HH
Q 004753 656 MW 657 (732)
Q Consensus 656 ~~ 657 (732)
+-
T Consensus 379 ~~ 380 (394)
T 3okp_A 379 EP 380 (394)
T ss_dssp CC
T ss_pred hc
Confidence 54
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.68 E-value=4.4e-16 Score=140.18 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=111.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 136 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 215 (732)
Q Consensus 136 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 215 (732)
++..++|+.+..+.++|..+++.|++++|++.|+++++++|.++.++.++|.++..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHH
Q 004753 216 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 253 (732)
Q Consensus 216 ~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 253 (732)
++.+|.+|..+|++++|++.|+++++++|++..+..++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 99999999999999999999999999999999887654
No 96
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.68 E-value=5.8e-15 Score=154.69 Aligned_cols=243 Identities=10% Similarity=0.008 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
++..+.......+..++|++++++++..+|++..+|+..+.++...+ .+++++..+++++..+|++..++.....++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44445555566677789999999999999999999999999999999 59999999999999999999999988888776
Q ss_pred hhhhHhhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHH
Q 004753 83 LGTKVKLEG-DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--------MAIVFYELAFHFNPHCAEACNNLGV 153 (732)
Q Consensus 83 lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~ 153 (732)
+. + +++++++++.++++.+|.+..+|...+.++...+.++ +++++++++++.+|.+..+|.+.+.
T Consensus 136 l~------~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 136 IS------PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HC------CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hc------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 51 3 6789999999999999999999999999999988887 9999999999999999999999999
Q ss_pred HHHHcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHH
Q 004753 154 IYKDRDN-------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM--------------------DAAAEMIEKAI 206 (732)
Q Consensus 154 ~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~eA~~~l~~al 206 (732)
++...++ ++++++++++++..+|++..+|+++..++...|+. .+-.+...+.+
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 9999887 79999999999999999999999999999887764 22233333332
Q ss_pred HhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCChhHHHH
Q 004753 207 AAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-KIDPDSRNAGQN 252 (732)
Q Consensus 207 ~~~------p~~~~~~~~La~~~~~~g~~~eA~~~~~~al-~l~p~~~~a~~~ 252 (732)
... +.++.++..|+.+|...|+.++|.++|+... +.+|-....+..
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 222 4678899999999999999999999999987 667765554443
No 97
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.68 E-value=2.6e-16 Score=172.06 Aligned_cols=339 Identities=11% Similarity=0.034 Sum_probs=209.7
Q ss_pred cccccCCCcc-cChhhhhhhHHhccccCCcEEEEEEeccccCCh-----h--hHHHHHHHhhhCCeEEEccCCCHHHHHH
Q 004753 300 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADA-----K--TIRFREKVMKKGGIWRDIYGIDEKKVAA 371 (732)
Q Consensus 300 rIGyvS~d~~-~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (732)
+|.++++.+. ...+..+...+...+.+. .+|.+++....+.. . ........ . +.....+....+.+
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~~ 75 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV----R-GLNEQGFYYSGLSE 75 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH----T-TCCSTTCCHHHHHH
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc----c-ccccccchHHHHHH
Confidence 4555554332 233455555565655555 77777664332100 0 11111111 0 11112345567889
Q ss_pred HHHhCCCcEEEeCCCCCCC-CchhhhccCC--CCeEEecccCCCC------CCCCC--ccEEEecCCCCCcCcccC-Ccc
Q 004753 372 MVREDKIDILVELTGHTAN-NKLGMMACQP--APVQVTWIGYPNT------TGLPT--IDYRITDSLADPPETKQK-HVE 439 (732)
Q Consensus 372 ~i~~d~~Dilvdl~g~t~~-~~~~~~a~r~--Apvq~~~~g~p~t------~g~~~--~Dy~~~d~~~~p~~~~~~-~~E 439 (732)
.|+..++||++-....... ..+..+...| .++...+...... .-+.. +|.+++-.-..-...... ..+
T Consensus 76 ~l~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~~~~~~~~~ 155 (413)
T 3oy2_A 76 FIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISDICNYGCKV 155 (413)
T ss_dssp HHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTTEEEEEESSTHHHHHHHHTTCCS
T ss_pred HHHhcCCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchhhHHHHHHHHhccCCceEEEcCHHHHHHHHHcCCCC
Confidence 9999999999754110000 0001111111 1222222221111 11223 337665321110011122 146
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCC--CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC--HH
Q 004753 440 ELIRLPECFLCYTPSPEAGPVCPTPALTN--GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DS 513 (732)
Q Consensus 440 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~--~~ 513 (732)
++..+|+.. .+... ...+...++++ +.++|++++++ .|..+.++++|.++.+..|+.+|+++|.+... ..
T Consensus 156 ~~~vi~ngv---d~~~~-~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~ 231 (413)
T 3oy2_A 156 PINIVSHFV---DTKTI-YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFD 231 (413)
T ss_dssp CEEECCCCC---CCCCC-TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCC
T ss_pred ceEEeCCCC---CHHHH-HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhh
Confidence 788888642 11111 11122234555 78899999998 99999999999999999999999999876321 12
Q ss_pred HHHHHHHHHHHcCCCCCc-------EEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCccc
Q 004753 514 VRHRFLSTLEQLGLESLR-------VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHA 585 (732)
Q Consensus 514 ~~~~~~~~~~~~Gv~~~r-------v~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~ 585 (732)
+.+.+++.+++.|++ ++ |.|.|.++ .++....|+.+|+++-|+.+ +.|.+++|||++|+|||+..
T Consensus 232 l~~~~~~~~~~~~l~-~~v~~l~~vv~~~g~~~-~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~----- 304 (413)
T 3oy2_A 232 LHSIALRELVASGVD-NVFTHLNKIMINRTVLT-DERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISA----- 304 (413)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHTTEEEECSCCC-HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEEC-----
T ss_pred HHHHHHHHHHHcCcc-cccccccceeeccCcCC-HHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcC-----
Confidence 568888999999994 76 77889887 68899999999999999988 66999999999999999843
Q ss_pred ccchh-HHhhhc------------------CCCcccc-CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 004753 586 HNVGV-SLLTKV------------------GLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 645 (732)
Q Consensus 586 ~r~~~-s~l~~~------------------gl~~~ia-~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~ 645 (732)
++. .-+..- |+.+++. .|.+++++.. ++..|++.+.++++..++.... .|+++.+
T Consensus 305 --~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~ 379 (413)
T 3oy2_A 305 --VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDFVKT--KPTWDDI 379 (413)
T ss_dssp --CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHHHTT--SCCHHHH
T ss_pred --CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH--hCCHHHH
Confidence 331 111111 2222333 5899999999 9999999999999999987643 4899999
Q ss_pred HHHHHHHHHHHHHHH
Q 004753 646 ALGLESTYRNMWHRY 660 (732)
Q Consensus 646 ~~~~e~~~~~~~~~~ 660 (732)
++.++++|+++.++.
T Consensus 380 ~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 380 SSDIIDFFNSLLRVE 394 (413)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987543
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.68 E-value=4.4e-15 Score=154.12 Aligned_cols=214 Identities=14% Similarity=0.043 Sum_probs=195.6
Q ss_pred hhHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHC---CCHHHHHHHHHHHHhhCCCCHHH
Q 004753 2 QPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR---GDLESAIACYERCLAVSPNFEIA 72 (732)
Q Consensus 2 a~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~ 72 (732)
..+|+..+.++...+ ++++++.++++++..+|++..+|+..+.++ ... +++++++.+++++++.+|++..+
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a 146 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH
Confidence 358999999999999 999999999999999999999999999999 777 89999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHhhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCC
Q 004753 73 KNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYYNWHYADAMYNLGVAYGEMLK------FDMAIVFYELAFHFNPHC 144 (732)
Q Consensus 73 ~~~la~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~ 144 (732)
+.....++..++ .++ +++++++++++.+|.+..+|...+.++...++ ++++++++++++..+|++
T Consensus 147 W~~R~~vl~~l~-------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 147 WSYRKWLVDTFD-------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp HHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhc-------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 888888777765 666 99999999999999999999999999999987 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHH
Q 004753 145 AEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-ANPTYAEAYNNL 219 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-~~p~~~~~~~~L 219 (732)
..+|+.++.++...|+..+ ....+++++++. +.++.++..++.++.+.|+.++|+++|+++.+ .+|-....|...
T Consensus 220 ~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 220 PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 9999999999999998555 556777777766 88999999999999999999999999999997 799999888876
Q ss_pred HHH
Q 004753 220 GVL 222 (732)
Q Consensus 220 a~~ 222 (732)
+..
T Consensus 300 ~~~ 302 (306)
T 3dra_A 300 ISK 302 (306)
T ss_dssp HHT
T ss_pred Hhh
Confidence 653
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.67 E-value=3e-16 Score=150.00 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=139.6
Q ss_pred HHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-Hc
Q 004753 80 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK-DR 158 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 158 (732)
+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++.+| ++..+..++.+.. ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 345566666788999999999999999999999999999999999999999999999999999 7777666665533 33
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 159 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAY 236 (732)
Q Consensus 159 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~La~~~~~~g~~~eA~~~~ 236 (732)
++..+|+..++++++.+|+++.+++++|.++...|++++|+..|+++++.+|+. ..++..++.++..+|+.++|+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 344468999999999999999999999999999999999999999999999875 569999999999999999999999
Q ss_pred HHHHh
Q 004753 237 EQCLK 241 (732)
Q Consensus 237 ~~al~ 241 (732)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=7e-16 Score=157.59 Aligned_cols=204 Identities=22% Similarity=0.282 Sum_probs=165.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PN 68 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 68 (732)
+.+++.+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|+++++.. ++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999987 35667899999999999999999999999999883 33
Q ss_pred CHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 69 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 69 ~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
++ ....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++
T Consensus 123 ~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HP----DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Ch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 23567788888888999999999999999998 6667789999999999999999999999999986
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 141 ---------NPHCAEACNNLGVIYKDRDN------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 205 (732)
Q Consensus 141 ---------~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 205 (732)
.+.....+..++..+...+. +.++...++......|....++..+|.+|..+|++++|+.+++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556677777777665444 344444444443445566779999999999999999999999999
Q ss_pred HHhC
Q 004753 206 IAAN 209 (732)
Q Consensus 206 l~~~ 209 (732)
++..
T Consensus 279 l~~~ 282 (283)
T 3edt_B 279 SRNR 282 (283)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 8753
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.66 E-value=2.4e-15 Score=155.97 Aligned_cols=160 Identities=9% Similarity=0.024 Sum_probs=120.7
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|+........+..+...++.
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 34444455667777777777777777777777777777777777777777777777777776666666666667777777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
++|+..++++++.+|++..+++++|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++|...|+++
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777 677777777777777777777777777
Q ss_pred Hh
Q 004753 240 LK 241 (732)
Q Consensus 240 l~ 241 (732)
+.
T Consensus 282 l~ 283 (287)
T 3qou_A 282 LY 283 (287)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.66 E-value=8.7e-16 Score=146.78 Aligned_cols=164 Identities=11% Similarity=-0.037 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
+.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++..| ++......+.+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999988 66443332222110
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDN 160 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 160 (732)
..++..+|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|+. ..++.+++.++...|+
T Consensus 86 ------~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 86 ------QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp ------HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred ------hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 11122346777777777777777777777777777777777777777777777664 4577777777777777
Q ss_pred HHHHHHHHHHHHh
Q 004753 161 LDKAVECYQMALS 173 (732)
Q Consensus 161 ~~~A~~~~~~al~ 173 (732)
.++|+..|++++.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 7777777777654
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.65 E-value=4.8e-15 Score=155.29 Aligned_cols=202 Identities=21% Similarity=0.201 Sum_probs=165.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHH
Q 004753 15 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 94 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 94 (732)
.+++++|+.+|+++ |.+|...|++++|+.+|.+++++.+... .....+.++..+|.+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNR-SLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCHH
Confidence 46788888887775 6789999999999999999999876543 22345778889999999999999
Q ss_pred HHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHH
Q 004753 95 QGVAYYKKALYYNWH--Y----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 95 ~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 162 (732)
+|+.+|++++++.+. + ..++.++|.+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 999999999988543 2 4678999999999 99999999999999986643 578999999999999999
Q ss_pred HHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHH
Q 004753 163 KAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE-----AYNNLGVLYRDAGSISL 231 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~-----~~~~La~~~~~~g~~~e 231 (732)
+|+.+|++++++.+.+ ..++.++|.++..+|++++|+.+|++++ ++|.... ....++..+ ..|+.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 9999999999986543 3478889999999999999999999999 9886532 344555554 4566544
Q ss_pred HHH
Q 004753 232 AID 234 (732)
Q Consensus 232 A~~ 234 (732)
...
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=2.2e-16 Score=146.77 Aligned_cols=118 Identities=9% Similarity=0.078 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 130 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 130 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
+-..++++++++|++..+++.+|.++...|++++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 44556777888888888888899988889999999999999999999989999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 210 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 210 p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
|+++.+++++|.+|..+|++++|+.+|++++++.|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 98888999999999999999999999999998888754
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.65 E-value=3.7e-15 Score=170.14 Aligned_cols=165 Identities=16% Similarity=0.048 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHH
Q 004753 15 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 94 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 94 (732)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+++|+++++++|++...+.. +|.++...|+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR-------LGRVRWTQQRHA 74 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHH-------HHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHCCCHH
Confidence 3667777777777777777777777777777777777777777777777777766544433 333333445667
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 004753 95 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMA 171 (732)
Q Consensus 95 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 171 (732)
+|+++|+++++.+|++..++.++|.++...|++++|++.|+++++++|++..++.+++.++..+ |++++|++.++++
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7777777777666666666666666666666666666666666666666666666666666666 6666666666666
Q ss_pred HhhCCCCHHHHHHHH
Q 004753 172 LSIKPNFSQSLNNLG 186 (732)
Q Consensus 172 l~~~p~~~~~~~~la 186 (732)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 666666555544443
No 106
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.64 E-value=1e-13 Score=144.61 Aligned_cols=207 Identities=9% Similarity=0.093 Sum_probs=182.0
Q ss_pred HHCCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhH---hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 47 KNRGDLE-SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV---KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 122 (732)
Q Consensus 47 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 122 (732)
...|+++ +|+.++.+++.++|++..++.....++..++... .....+++++.++.+++..+|++..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 4566665 8999999999999999999999988888776310 01123789999999999999999999999999999
Q ss_pred HcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-------
Q 004753 123 EMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN-LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ------- 192 (732)
Q Consensus 123 ~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------- 192 (732)
..++ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|.+++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 9994 9999999999999999999999999999999998 69999999999999999999999999999887
Q ss_pred -------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCChhHHHHH
Q 004753 193 -------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-----------GSISLAIDAYEQCLKIDPDSRNAGQNR 253 (732)
Q Consensus 193 -------g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~-----------g~~~eA~~~~~~al~l~p~~~~a~~~~ 253 (732)
+.++++++++.+++..+|++..+|+.+..++... +.++++++++++++++.|++.-.....
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 5689999999999999999999998776666555 468999999999999999986554433
No 107
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.64 E-value=3.9e-16 Score=170.03 Aligned_cols=330 Identities=12% Similarity=0.081 Sum_probs=215.7
Q ss_pred CCCccccccCCCccc--ChhhhhhhHHhccccCCcEEEEEEeccccCChhh---------HHHHHHHhhhCCeEEEccCC
Q 004753 296 ERPLVIGYVSPDYFT--HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT---------IRFREKVMKKGGIWRDIYGI 364 (732)
Q Consensus 296 ~~~lrIGyvS~d~~~--h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~---------~~~~~~~~~~~~~~~~~~~~ 364 (732)
.++.+|.+++..+.. ..+...+..+.......+++|.+++......... .++.. . ..+..+ ..
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~-~~ 91 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPY--N---GSVARL-RF 91 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------------C
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccc--c---CCcccc-cc
Confidence 456788889876543 3444555566666666678998887654332000 00000 0 000000 11
Q ss_pred C---HHHHHHHHHhCCCcEEEeCCCCCCCCchhhhcc--CCCCeEEecccCCCCC------------CCCCccEEEecCC
Q 004753 365 D---EKKVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIGYPNTT------------GLPTIDYRITDSL 427 (732)
Q Consensus 365 ~---~~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~--r~Apvq~~~~g~p~t~------------g~~~~Dy~~~d~~ 427 (732)
. ...+.+.|+..++||++-........ ..+.. ...|+.+...+..... .+...|.+++-.-
T Consensus 92 ~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 169 (406)
T 2gek_A 92 GPATHRKVKKWIAEGDFDVLHIHEPNAPSL--SMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSD 169 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEECCCSSSH--HHHHHHHEESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSH
T ss_pred cHHHHHHHHHHHHhcCCCEEEECCccchHH--HHHHHHhcCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCH
Confidence 2 25678888989999998655444322 22222 2468888877743221 1245677775321
Q ss_pred CCCcCcccCC-ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCcEEEecCCC---CcCCHHHHHHHHHHHhHcCCcE
Q 004753 428 ADPPETKQKH-VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSR 501 (732)
Q Consensus 428 ~~p~~~~~~~-~E~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~ 501 (732)
..-......| .+++ .+|+..- .|.+.. ....++++.+++++++++ .|..+.++++|.++.++.|+.+
T Consensus 170 ~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~------~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~ 242 (406)
T 2gek_A 170 LARRWQMEALGSDAV-EIPNGVDVASFADAP------LLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVE 242 (406)
T ss_dssp HHHHHHHHHHSSCEE-ECCCCBCHHHHHTCC------CCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCE
T ss_pred HHHHHHHHhcCCCcE-EecCCCChhhcCCCc------hhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeE
Confidence 0000011122 3456 7776421 122221 112333356788888887 7899999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCC-C-CCcccHHHhhhcCCCeeec
Q 004753 502 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-Y-AGTTTTCESLYMGVPCVTM 579 (732)
Q Consensus 502 l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~-~-~g~~t~~eal~~GvPvvt~ 579 (732)
|+++|.+ +. +.+++.++++ .++|.|.|.++ ..+....|+.+||+|-|+. + +.+++++|||++|+|||+.
T Consensus 243 l~i~G~~----~~-~~l~~~~~~~---~~~v~~~g~~~-~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~ 313 (406)
T 2gek_A 243 ILIVGRG----DE-DELREQAGDL---AGHLRFLGQVD-DATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVAS 313 (406)
T ss_dssp EEEESCS----CH-HHHHHHTGGG---GGGEEECCSCC-HHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEEC
T ss_pred EEEEcCC----cH-HHHHHHHHhc---cCcEEEEecCC-HHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEe
Confidence 9999987 33 6777766665 58999999987 6788999999999999974 5 6688999999999999985
Q ss_pred CCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 580 AGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 580 ~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
... +..-+..-|..++++ .|.+++++...++..|++.+.++++..++... .|+++.++..++++|+++.
T Consensus 314 ~~~------~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~ 384 (406)
T 2gek_A 314 DLD------AFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH---RYDWSVVSAQIMRVYETVS 384 (406)
T ss_dssp CCH------HHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG---GGBHHHHHHHHHHHHHHHC
T ss_pred cCC------cHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 432 122222235566676 79999999999999999999999999888764 4899999999999999886
Q ss_pred H
Q 004753 658 H 658 (732)
Q Consensus 658 ~ 658 (732)
.
T Consensus 385 ~ 385 (406)
T 2gek_A 385 G 385 (406)
T ss_dssp C
T ss_pred h
Confidence 3
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.64 E-value=5.2e-15 Score=153.49 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=150.9
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC
Q 004753 31 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 110 (732)
Q Consensus 31 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 110 (732)
..|.+...++.+|..+...|++++|+..|+++++.+|++..++..++.+ +...|++++|+..+++++..+|+.
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~-------~~~~g~~~~A~~~l~~~~~~~p~~ 184 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAET-------LIALNRSEDAEAVLXTIPLQDQDT 184 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHH-------HHHTTCHHHHHHHHTTSCGGGCSH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHH-------HHHCCCHHHHHHHHHhCchhhcch
Confidence 3488889999999999999999999999999999999988766555544 444669999999999999999977
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF--SQSLNNLGVV 188 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 188 (732)
.......+..+...++.++|+..++++++.+|++..+++++|.++...|++++|+..|+++++.+|++ ..++.+++.+
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 77777777788888999999999999999999999999999999999999999999999999999988 8899999999
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 004753 189 YTVQGKMDAAAEMIEKAIA 207 (732)
Q Consensus 189 ~~~~g~~~eA~~~l~~al~ 207 (732)
+...|+.++|+..|++++.
T Consensus 265 ~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999875
No 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=1.3e-16 Score=169.48 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHHH----HHhhCCCCHHHHHHHHHHHHHhhhhH------------hhcCCHHHHHHHHHHHHHhCCCCHH
Q 004753 49 RGDLESAIACYER----CLAVSPNFEIAKNNMAIALTDLGTKV------------KLEGDINQGVAYYKKALYYNWHYAD 112 (732)
Q Consensus 49 ~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~~lg~~~------------~~~g~~~~A~~~~~~al~~~p~~~~ 112 (732)
.+.+++|+..+++ ++.+.|+.. |...|... ...+++++|+..++++++.+|....
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~a---------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSYA---------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTTT---------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCccc---------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 4467778887777 777777651 22233222 1456788899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
++..+|.++...|++++|+..|+++++++|.+ ..++.++|.++..+|++++|+.+|+++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 242 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA-~~~~~~al~l 242 (732)
++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 5577776643
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=2.4e-14 Score=141.35 Aligned_cols=176 Identities=16% Similarity=0.068 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcC----CHH
Q 004753 19 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG----DIN 94 (732)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g----~~~ 94 (732)
.+|++.|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+.. +..+ ++.+|.+|.. + +++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a-------~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDA-------LALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHH-------HHHHHHHTTS-STTSCCHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHH-------HHHHHHHHHc-CCCCCCHH
Confidence 3567777777765 567788888888888888888888888877642 3333 3444544544 4 777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHH
Q 004753 95 QGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLDKA 164 (732)
Q Consensus 95 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A 164 (732)
+|+++|+++.+ +.++.+++++|.+|.. .+++++|+++|+++++..+ .++.++++||.+|.. .+++++|
T Consensus 71 ~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 71 QARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 77777777754 4567777777777766 6677777777777777665 236677777777776 6667777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhC
Q 004753 165 VECYQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAAN 209 (732)
Q Consensus 165 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~l~~al~~~ 209 (732)
+.+|+++.+. +.++.+++++|.+|... | ++++|+.+|+++.+..
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777777666 45556666677666553 2 6667777776666653
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.63 E-value=6.5e-16 Score=156.81 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=178.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC-
Q 004753 39 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY- 110 (732)
Q Consensus 39 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 110 (732)
++..|.-+ ..+++.+|.+.|.++++++|+..++|..+ +.++..+. +..+++..+++.+.+.|..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~-------r~~~a~~~~~~~l~l~p~~l 81 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW-------YSRRNFGQLSGSVQISMSTL 81 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH-------HTGGGTTHHHHTTTCCGGGG
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH-------HHHHHHHHHHHHhcCChhhh
Confidence 44445554 57899999999999999999999998887 56666655 5677888888888876643
Q ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 111 --------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170 (732)
Q Consensus 111 --------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 170 (732)
.++...++.++...|+|++|.+.|+..+...|.+. ..+.+|.++.+.+++++|+.+|++
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566689999999999999999999999999888 999999999999999999999998
Q ss_pred HHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 171 ALSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 171 al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~-~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
+.+..+.. ..+++++|.++..+|++++|+.+|++++... |. ..++++.+|.++.++|+.++|...|++++..+|+
T Consensus 161 a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 87653221 3589999999999999999999999998654 55 6689999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhccCCcHHHH
Q 004753 246 SRNAGQNRLLAMNYINEGHDDKLF 269 (732)
Q Consensus 246 ~~~a~~~~~la~~~~~~~~~~~a~ 269 (732)
..+... +....|...-...+.+
T Consensus 241 -~~~~~a-L~~~~~~~~~t~~~~i 262 (282)
T 4f3v_A 241 -PKVAAA-LKDPSYRLKTTTAEQI 262 (282)
T ss_dssp -HHHHHH-HHCTTCCCCCCCHHHH
T ss_pred -HHHHHH-HhCCCCCCCCCcHHHH
Confidence 555432 3333343333444433
No 112
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.62 E-value=6.5e-16 Score=167.83 Aligned_cols=276 Identities=16% Similarity=0.132 Sum_probs=183.3
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCchhhhccC----CCCeEEecccCCC-CCC------------CCCccEEEecCCCC
Q 004753 367 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ----PAPVQVTWIGYPN-TTG------------LPTIDYRITDSLAD 429 (732)
Q Consensus 367 ~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r----~Apvq~~~~g~p~-t~g------------~~~~Dy~~~d~~~~ 429 (732)
..+.+.|+..++||++-..++... ....++.+ -.|+.++..|... ..+ +...|.+++-.-..
T Consensus 89 ~~l~~~l~~~~~Dvv~~~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 167 (394)
T 2jjm_A 89 SKMAEVAQRENLDILHVHYAIPHA-ICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSL 167 (394)
T ss_dssp HHHHHHHHHHTCSEEEECSSTTHH-HHHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEcchhHHH-HHHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHH
Confidence 357788899999999754332211 12222221 3788888777321 111 12256666532100
Q ss_pred CcCcccCC--ccceEEcCCCccccCCCCCCCCC----CCCCCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE
Q 004753 430 PPETKQKH--VEELIRLPECFLCYTPSPEAGPV----CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 501 (732)
Q Consensus 430 p~~~~~~~--~E~l~~lp~~~~~~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 501 (732)
-......+ .+++..+|+.. .+....+.. +...+++++.+++++++++ .|..+.++++|..+... ++.+
T Consensus 168 ~~~~~~~~~~~~~~~vi~ngv---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~ 243 (394)
T 2jjm_A 168 INETHELVKPNKDIQTVYNFI---DERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAK 243 (394)
T ss_dssp HHHHHHHTCCSSCEEECCCCC---CTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCE
T ss_pred HHHHHHhhCCcccEEEecCCc---cHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCE
Confidence 00011111 46788888742 111111110 1112344667788999987 79999999999998877 6789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecC
Q 004753 502 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 502 l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~ 580 (732)
|+++|.+ +..+.+++.++++|+ .++|.|.|. .++....|+.+|+++-|+.+ +.+++++|||++|+|||+..
T Consensus 244 l~i~G~g----~~~~~l~~~~~~~~l-~~~v~~~g~---~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~ 315 (394)
T 2jjm_A 244 LLLVGDG----PEFCTILQLVKNLHI-EDRVLFLGK---QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTR 315 (394)
T ss_dssp EEEECCC----TTHHHHHHHHHTTTC-GGGBCCCBS---CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEEC
T ss_pred EEEECCc----hHHHHHHHHHHHcCC-CCeEEEeCc---hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEec
Confidence 9999976 456788889999999 589999996 35677888889999999988 55889999999999999855
Q ss_pred CCcccccchhHHhhhcCCCccccC--CHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 581 GSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 581 g~~~~~r~~~s~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
...+..-+. -|-.++++. |.+++++...++..|++.+.++++..++.... .|+++.+++.++++|+++..
T Consensus 316 ~~~~~e~v~------~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~ 387 (394)
T 2jjm_A 316 VGGIPEVIQ------HGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYE--QFRSEKIVSQYETIYYDVLR 387 (394)
T ss_dssp CTTSTTTCC------BTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTC-
T ss_pred CCChHHHhh------cCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHh
Confidence 432222111 133445554 89999999999999999999999998887633 38999999999999999887
Q ss_pred HHhcC
Q 004753 659 RYCKG 663 (732)
Q Consensus 659 ~~~~~ 663 (732)
+...|
T Consensus 388 ~~~~~ 392 (394)
T 2jjm_A 388 DDKNG 392 (394)
T ss_dssp -----
T ss_pred hhhcc
Confidence 66554
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=9.7e-16 Score=142.43 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 171 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 171 (732)
++-.+-..++++++++|++..+++.+|.++...|++++|+..|+++++++|+++.+|.++|.++..+|++++|+.+|+++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34444566778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004753 172 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 172 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 213 (732)
++++|+++.+++++|.+|..+|++++|+..|++++++.|+..
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999864
No 114
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.62 E-value=9e-16 Score=172.33 Aligned_cols=185 Identities=10% Similarity=0.068 Sum_probs=148.7
Q ss_pred CCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCc-EEEEecCCCCC--------HHH---HHHHHHHHHHcCCCCCc
Q 004753 466 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNS-RLVVKCKPFCC--------DSV---RHRFLSTLEQLGLESLR 531 (732)
Q Consensus 466 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~-~l~l~~~~~~~--------~~~---~~~~~~~~~~~Gv~~~r 531 (732)
++++.++|++++++ .|..+.++++|..+....|+. +|+++|.+.+. ... .+.+++.++++|+ .++
T Consensus 258 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l-~~~ 336 (499)
T 2r60_A 258 ERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDC-RGK 336 (499)
T ss_dssp GGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTC-BTT
T ss_pred cCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCC-Cce
Confidence 45677789999988 899999999999998887776 68888762111 122 7889999999999 589
Q ss_pred EEEcCCcCCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--C
Q 004753 532 VDLLPLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--K 604 (732)
Q Consensus 532 v~~~~~~~~~~~~~~~~~~~----Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~ 604 (732)
|.|+|.++ ..+....|+.+ ||++-|+.+ +.|.+++|||++|+|||+.... |..-+..-|..++++ .
T Consensus 337 V~~~G~v~-~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~------g~~e~v~~~~~g~l~~~~ 409 (499)
T 2r60_A 337 VSMFPLNS-QQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNG------GPAEILDGGKYGVLVDPE 409 (499)
T ss_dssp EEEEECCS-HHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSB------HHHHHTGGGTSSEEECTT
T ss_pred EEECCCCC-HHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCC------CHHHHhcCCceEEEeCCC
Confidence 99999987 68899999999 999999988 6689999999999999985432 212222224455554 4
Q ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 004753 605 NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 660 (732)
Q Consensus 605 ~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 660 (732)
|.+++++...++..|++.+.++++..++.... .|+++.+++.++++|+++..+.
T Consensus 410 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 410 DPEDIARGLLKAFESEETWSAYQEKGKQRVEE--RYTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--HSBHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999998887654 3899999999999999998643
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.61 E-value=2.4e-15 Score=152.62 Aligned_cols=214 Identities=13% Similarity=0.032 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH-
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM-------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNN- 75 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~- 75 (732)
.++..|.-+ ..+++.+|.+.|.++++.+|+..++|..+ +.++...++..+++..+.+.+.+.|.....++.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 456677776 68999999999999999999999999999 899999999999999999999988876544443
Q ss_pred H-------------HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004753 76 M-------------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 142 (732)
Q Consensus 76 l-------------a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 142 (732)
. -.+...++..+...|++++|.+.|+.++...|.+. +.+.+|.++.+.+++++|+.+|+++.+..+
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 1 12233445556667899999999999999999888 999999999999999999999998877542
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 143 HC--AEACNNLGVIYKDRDNLDKAVECYQMALSIK--PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 143 ~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
.. ..+++++|.++..+|++++|+.+|++++... |. ..++++++|.++..+|+.++|...|++++..+|+ ..+..
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 21 4589999999999999999999999998654 55 5679999999999999999999999999999999 77766
Q ss_pred HHH
Q 004753 218 NLG 220 (732)
Q Consensus 218 ~La 220 (732)
.|.
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.60 E-value=5e-14 Score=126.07 Aligned_cols=134 Identities=40% Similarity=0.645 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 191 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 191 (732)
.+++.+|.++...|++++|+..++++++.+|.+...+..+|.++...|++++|+.+++++++..|.+...+..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 192 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 192 ~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
.|++++|+++++++++..|.+..++..+|.++...|++++|..+++++++.+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888888888888888888888888888888888888888887775
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.59 E-value=6.7e-15 Score=136.45 Aligned_cols=119 Identities=10% Similarity=-0.016 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 131 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 131 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 210 (732)
...|+++++++|++...++.+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34577888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 211 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 211 ~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
+++.+++++|.+|..+|++++|+.+|+++++++|+++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 888888888888888888888888888888888877654
No 118
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.59 E-value=6e-14 Score=149.17 Aligned_cols=291 Identities=10% Similarity=0.017 Sum_probs=183.8
Q ss_pred ChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeCCCCCCC
Q 004753 311 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTAN 390 (732)
Q Consensus 311 h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~Dilvdl~g~t~~ 390 (732)
..+..+...+.......+++|.+++........ ....-+.......+.+.|+..++||++-...+...
T Consensus 30 gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~------------~~~~~~~~~~~~~l~~~l~~~~~Dvi~~~~~~~~~ 97 (342)
T 2iuy_A 30 GGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR------------PGLTVVPAGEPEEIERWLRTADVDVVHDHSGGVIG 97 (342)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS------------TTEEECSCCSHHHHHHHHHHCCCSEEEECSSSSSC
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC------------CcceeccCCcHHHHHHHHHhcCCCEEEECCchhhH
Confidence 445555666666666668899888765433211 11222222234578899999999999765443221
Q ss_pred CchhhhccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCcccCC--ccceEEcCCCccccCCCCCCCCCCCCCCCCC
Q 004753 391 NKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH--VEELIRLPECFLCYTPSPEAGPVCPTPALTN 468 (732)
Q Consensus 391 ~~~~~~a~r~Apvq~~~~g~p~t~g~~~~Dy~~~d~~~~p~~~~~~~--~E~l~~lp~~~~~~~~~~~~~~~~~~~~~~~ 468 (732)
......-.| .++..+..... ...|.+++-. ......+ .+++..+|+.. ..... .+... ..+
T Consensus 98 ---~~~~~~~~p-v~~~h~~~~~~--~~~d~ii~~S----~~~~~~~~~~~~~~vi~ngv-d~~~~--~~~~~---~~~- 160 (342)
T 2iuy_A 98 ---PAGLPPGTA-FISSHHFTTRP--VNPVGCTYSS----RAQRAHCGGGDDAPVIPIPV-DPARY--RSAAD---QVA- 160 (342)
T ss_dssp ---STTCCTTCE-EEEEECSSSBC--SCCTTEEESC----HHHHHHTTCCTTSCBCCCCB-CGGGS--CCSTT---CCC-
T ss_pred ---HHHhhcCCC-EEEecCCCCCc--ccceEEEEcC----HHHHHHHhcCCceEEEcCCC-Chhhc--Ccccc---cCC-
Confidence 111122347 66666653322 1245554421 1111111 35666677632 11100 00000 111
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+..++++++++ .|..+.+++++.++ +.+|+++|.| +.++.+++..++.| ++|.|+|.++ ..+...
T Consensus 161 ~~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g----~~~~~l~~~~~~~~---~~v~~~g~~~-~~~l~~ 227 (342)
T 2iuy_A 161 KEDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPA----WEPEYFDEITRRYG---STVEPIGEVG-GERRLD 227 (342)
T ss_dssp CCSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCC----CCHHHHHHHHHHHT---TTEEECCCCC-HHHHHH
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCc----ccHHHHHHHHHHhC---CCEEEeccCC-HHHHHH
Confidence 23357777776 78888999988875 7899999987 35566777777776 7999999987 678889
Q ss_pred hcccccEEecCCC----------C-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhc--CCCccccC-CHHHHHHH
Q 004753 547 AYSLMDISLDTFP----------Y-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV--GLKHLIAK-NEDEYVQL 612 (732)
Q Consensus 547 ~~~~~Di~Ld~~~----------~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~--gl~~~ia~-~~~~y~~~ 612 (732)
.|+.+|+++-|+. + +.+++++|||++|+|||+.... |..-+..- |-.+++++ |.+++++.
T Consensus 228 ~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~------~~~e~~~~~~~~~g~~~~~d~~~l~~~ 301 (342)
T 2iuy_A 228 LLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNG------CLAEIVPSVGEVVGYGTDFAPDEARRT 301 (342)
T ss_dssp HHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTT------THHHHGGGGEEECCSSSCCCHHHHHHH
T ss_pred HHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCC------ChHHHhcccCCCceEEcCCCHHHHHHH
Confidence 9999999999998 5 6688999999999999985432 11212222 45566766 99999998
Q ss_pred HHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 004753 613 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 659 (732)
Q Consensus 613 a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 659 (732)
..++.+ ....|+.+++ .|+++.+++.++++|+++..+
T Consensus 302 i~~l~~----~~~~~~~~~~------~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 302 LAGLPA----SDEVRRAAVR------LWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp HHTSCC----HHHHHHHHHH------HHBHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH----HHHHHHHHHH------hcCHHHHHHHHHHHHHHHHcc
Confidence 888887 2233333332 278999999999999998743
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.59 E-value=5.8e-14 Score=139.80 Aligned_cols=180 Identities=12% Similarity=0.082 Sum_probs=128.0
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE---ACNNL 151 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l 151 (732)
..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|++.. +++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 456777888888888888888888888887765 367888888888888888888888888888887753 77888
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004753 152 GVIYKD------------------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 152 a~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 213 (732)
|.++.. .|++++|+..|+++++..|++..+...+..+....+ ...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLA 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHH
Confidence 888775 345555555555555555555433221111110000 001
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH-HHHHHHHHhhhccCCcHHHHHHHHH
Q 004753 214 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA-GQNRLLAMNYINEGHDDKLFEAHRD 274 (732)
Q Consensus 214 ~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a-~~~~~la~~~~~~~~~~~a~~~~~~ 274 (732)
.....+|.+|...|++++|+..|+++++..|++... .....++.+|...|+.+++.+..+.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 223678999999999999999999999999998743 3344578888999999888766543
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.59 E-value=5.1e-14 Score=138.97 Aligned_cols=177 Identities=14% Similarity=0.039 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHH
Q 004753 53 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML----KFD 128 (732)
Q Consensus 53 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~ 128 (732)
.+|+.+|+++.+. .++.+. +.+|.+|...+++++|+++|+++.+. .++.+++++|.+|.. + +++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~-------~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQ-------YYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHH-------HHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHH
T ss_pred chHHHHHHHHHHC--CCHHHH-------HHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHH
Confidence 4678889999876 455444 44555555678999999999999875 689999999999998 7 999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHH
Q 004753 129 MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTV----QGKMDAA 198 (732)
Q Consensus 129 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~eA 198 (732)
+|+++|+++.+ +.++.+++++|.+|.. .+++++|+.+|+++.+..+ .++.++++||.+|.. .+++++|
T Consensus 71 ~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 71 QARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999965 5689999999999998 8999999999999999887 358999999999999 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCC
Q 004753 199 AEMIEKAIAANPTYAEAYNNLGVLYRDA-G-----SISLAIDAYEQCLKIDP 244 (732)
Q Consensus 199 ~~~l~~al~~~p~~~~~~~~La~~~~~~-g-----~~~eA~~~~~~al~l~p 244 (732)
+.+|+++++. +.++.++++||.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 67788999999999875 3 89999999999998743
No 121
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=1.9e-13 Score=161.83 Aligned_cols=238 Identities=14% Similarity=0.101 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+|+.+|.++...|++++|+..|.++ +++..|..+|.++.+.|++++|+++|..+.+..++.. ....
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-Idt~------ 1172 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-VETE------ 1172 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-ccHH------
Confidence 356777777777777777777777664 6677777777777777777777777777777664421 1112
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
+|.+|.+.+++++ ++.|. ...+...+..+|..+...|+|++|..+|.++ ..|..++.++.++|++
T Consensus 1173 -LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1173 -LIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred -HHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCH
Confidence 3444444456664 33332 2223455667888888888888888888875 4677888888888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
++|++.++++ .+..+|...+.++...|++..|..+... +.. +++.+..++..|...|.+++|+.++++++.
T Consensus 1238 q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1238 QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888887 4567888888888888888888877764 333 355666899999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHhhhccCCcHHHHHHHHHHHHH
Q 004753 242 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 278 (732)
Q Consensus 242 l~p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 278 (732)
+++.+...+..+.. .|. .-.+++..+..+.+..+
T Consensus 1309 LeraH~gmftELai--Lya-Ky~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1309 LERAHMGMFTELAI--LYS-KFKPQKMREHLELFWSR 1342 (1630)
T ss_pred cChhHhHHHHHHHH--HHH-hCCHHHHHHHHHHHHHh
Confidence 99887766655333 332 23455555555555443
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=3.7e-16 Score=166.00 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=153.3
Q ss_pred cCCHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 15 LMQYDTALGCYEK----AALERPMYAEAYCNMGVIYK------------NRGDLESAIACYERCLAVSPNFEIAKNNMAI 78 (732)
Q Consensus 15 ~g~~~~A~~~~~~----al~~~p~~~~a~~~lg~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 78 (732)
.+.+++|+..+++ ++.+.|.. +|..+|.... .++++++|+..++++++..|+. +.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~-------a~ 148 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ-------ST 148 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH-------HH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH-------HH
Confidence 3467778888877 77777776 5555554432 4556677777777776665544 34
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 143 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 143 (732)
++..+|..+...|++++|+.+|++++++.|.+ ..++.++|.+|..+|++++|+.+|+++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45556666666779999999999999999988 689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA-AEMIEKAIA 207 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~l~~al~ 207 (732)
+..+++++|.++..+|++++|+..|+++++++|++..++.+++.++..+|++++| ...|++++.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 456666654
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.58 E-value=7.7e-15 Score=151.65 Aligned_cols=198 Identities=14% Similarity=0.047 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHH
Q 004753 33 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 112 (732)
Q Consensus 33 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 112 (732)
|.++..+..+|..+...|++++|+..|+++++.+|++...+.++ |.++...|++++|+..++++++++|++..
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-------ALCYLKMQQPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH-------HHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 34566677777777777777777777777777777665444433 33333345777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
+++.+|.++...|++++|+..|+++++++|++...+........ +..++...........+.+..+...++.++ .
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~ 148 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--A 148 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--H
Confidence 77777777777777777777777777776654221111111111 122233333334445666666666666654 6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 004753 193 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKI 242 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~-g~~~eA~~~~~~al~l 242 (732)
|++++|++.++++++.+|++......++.++... +.+++|.+.|+++.+.
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7888888888888888888777777777777665 6678888888877654
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=4.6e-15 Score=137.58 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004753 96 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 175 (732)
Q Consensus 96 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 175 (732)
+...|++++..+|++..+++.+|.++...|++++|+..|+++++.+|.++.+++++|.++...|++++|+..|+++++++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 176 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 176 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
|+++.+++++|.++...|++++|+..|+++++++|+++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999999999999998876553
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=1.7e-13 Score=122.56 Aligned_cols=133 Identities=38% Similarity=0.601 Sum_probs=126.7
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 158 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 158 (732)
++..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|.+...+..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45567777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 159 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 159 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999998876
No 126
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.56 E-value=1.9e-14 Score=158.10 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=144.1
Q ss_pred CCCCCcEEEecCCCC---cCCHHHHHHHHHHHhHc--CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 004753 466 LTNGFITFGSFNNLA---KITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 540 (732)
Q Consensus 466 ~~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~--p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~ 540 (732)
++++ +++++++++. |..+.+++++.++.... |+.+|+++|.| .....+.+++..++.| +++.|.|.++
T Consensus 248 ~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g--~~~~~~~l~~~~~~~~---~~~~~~g~~~- 320 (439)
T 3fro_A 248 MDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG---NVKVITEMLS- 320 (439)
T ss_dssp CCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCC--CHHHHHHHHHHHHHCT---TEEEECSCCC-
T ss_pred CCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCC--ChhHHHHHHHHHhhcC---CEEEEcCCCC-
Confidence 4566 8899999865 88999999999999877 99999999976 3344588888888887 7788999877
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC--CHHHHHHHHHHhh
Q 004753 541 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLA 617 (732)
Q Consensus 541 ~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~--~~~~y~~~a~~l~ 617 (732)
.++....|..+||++-|+.+ +.+++++|||++|+|||+.....+. .++ .-| .+++.. |.+++++...++.
T Consensus 321 ~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~-----e~~-~~~-~g~~~~~~d~~~la~~i~~ll 393 (439)
T 3fro_A 321 REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLR-----DII-TNE-TGILVKAGDPGELANAILKAL 393 (439)
T ss_dssp HHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHH-----HHC-CTT-TCEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcc-----eeE-EcC-ceEEeCCCCHHHHHHHHHHHH
Confidence 68889999999999999988 5589999999999999985432111 122 125 555554 9999999999999
Q ss_pred c-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 618 S-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 618 ~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
. |++.+.++++..++.. .. |+++.+++.++++|+++.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~-~~--~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 394 ELSRSDLSKFRENCKKRA-MS--FSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp HHTTTTTHHHHHHHHHHH-HT--SCHHHHHHHHHHHHHTCSC
T ss_pred hcCHHHHHHHHHHHHHHH-hh--CcHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999876 33 8999999999999998753
No 127
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.56 E-value=3.4e-14 Score=156.44 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=148.8
Q ss_pred CCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcC--CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 004753 465 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP--NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 540 (732)
Q Consensus 465 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p--~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~ 540 (732)
+++++.++|++++++ .|..+.++++|.++.+..| +.+|+++|......+..+.+++.+++.|+ .++|.|+|.++
T Consensus 238 ~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l-~~~v~~~g~~~- 315 (438)
T 3c48_A 238 GIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGV-EKRIRFLDPRP- 315 (438)
T ss_dssp TCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTC-TTTEEEECCCC-
T ss_pred CCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCC-CCcEEEcCCCC-
Confidence 345677889999987 7999999999999999988 79999998732112567888999999999 58999999987
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC--CHHHHHHHHHHhh
Q 004753 541 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLA 617 (732)
Q Consensus 541 ~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~--~~~~y~~~a~~l~ 617 (732)
..+....|+.+||++-|+.+ +.+++++|||++|+|||+.....+.. +..-|..++++. |.+++++...++.
T Consensus 316 ~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e------~i~~~~~g~~~~~~d~~~la~~i~~l~ 389 (438)
T 3c48_A 316 PSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPI------AVAEGETGLLVDGHSPHAWADALATLL 389 (438)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHH------HSCBTTTEEEESSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhH------HhhCCCcEEECCCCCHHHHHHHHHHHH
Confidence 67899999999999999987 55889999999999999854332211 112244555554 8999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 004753 618 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 660 (732)
Q Consensus 618 ~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 660 (732)
.|++.+.++++..++.... |+++.+++.++++|+++..+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3c48_A 390 DDDETRIRMGEDAVEHART---FSWAATAAQLSSLYNDAIANE 429 (438)
T ss_dssp HCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998887653 899999999999999998653
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.55 E-value=3.9e-13 Score=140.83 Aligned_cols=234 Identities=12% Similarity=0.017 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 115 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 115 (732)
..++..+..+....+..++|++++++++.++|++..++...+.++..++ ..++++++++++++..+|++..+|.
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~------~~l~eEL~~~~~~L~~nPKny~aW~ 127 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN------KSLEDELRLMNEFAVQNLKSYQVWH 127 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4556666666666777789999999999999999999888887777654 2599999999999999999999999
Q ss_pred HHHHHHHHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHH
Q 004753 116 NLGVAYGEM-L-KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD--------KAVECYQMALSIKPNFSQSLNNL 185 (732)
Q Consensus 116 ~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l 185 (732)
..+.++... + ++++++++++++++.+|.+..+|...+.++...+.++ +++++++++++.+|.+..+|.+.
T Consensus 128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R 207 (349)
T 3q7a_A 128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999998 8 8999999999999999999999999999999888887 99999999999999999999999
Q ss_pred HHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHH
Q 004753 186 GVVYTVQGK-------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI--------------------SLAIDAYEQ 238 (732)
Q Consensus 186 a~~~~~~g~-------~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~--------------------~eA~~~~~~ 238 (732)
+.++...++ ++++++++++++..+|++..+|+.+..++...|+. .+-.+...+
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFP 287 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CC
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHH
Confidence 999999887 79999999999999999999999999999888764 222222222
Q ss_pred HHhhC----CCChhHHHHHHHHHhhhccCCcHHHHHHHHHH
Q 004753 239 CLKID----PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 275 (732)
Q Consensus 239 al~l~----p~~~~a~~~~~la~~~~~~~~~~~a~~~~~~~ 275 (732)
.+... .+......--.++..|...++.+++.+.....
T Consensus 288 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 288 MPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp CCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22221 01123333345677777778777776665543
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.55 E-value=1.4e-14 Score=149.63 Aligned_cols=195 Identities=13% Similarity=0.052 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+.+++.+|..++..|++++|+..|+++++.+|++..+++++|.+|...|++++|+..++++++++|++..++..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----- 78 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL----- 78 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH-----
Confidence 578999999999999999999999999999999999999999999999999999999999999999987665554
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
|.++...|++++|+..|+++++++|++...+........ ...++...........+.+..+...++.++ .|++
T Consensus 79 --g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 79 --GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 445555679999999999999998866322221222221 222333344444456777777777777765 6999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 208 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~ 208 (732)
++|++.++++++.+|++......++.++... +.+++|.+.|.++.+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999988888888777776 7789999999988654
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.55 E-value=2.9e-13 Score=140.52 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=92.0
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHH
Q 004753 88 KLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIY 155 (732)
Q Consensus 88 ~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 155 (732)
...|++++|++.++++++..+... ..++.+|.++...|++++|+.+++++++..+.. ..++.++|.+|
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 334455555555555555444332 223445555555566666666666665543322 34566666666
Q ss_pred HHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Q 004753 156 KDRDNLDKAVECYQMAL---SIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVL 222 (732)
Q Consensus 156 ~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------~~~~~~~La~~ 222 (732)
...|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.++++++++.++ ...+++++|.+
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~ 245 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 66666666666666666 3334432 46667777777777777777777777665322 15667777777
Q ss_pred HHHcCCHHHH-HHHHHHHHhhC
Q 004753 223 YRDAGSISLA-IDAYEQCLKID 243 (732)
Q Consensus 223 ~~~~g~~~eA-~~~~~~al~l~ 243 (732)
|..+|++++| ..+|++++.+.
T Consensus 246 y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 246 LRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHH
Confidence 7777777777 66677777653
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.55 E-value=3e-14 Score=130.81 Aligned_cols=119 Identities=10% Similarity=0.008 Sum_probs=94.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 132 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 132 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
..|+++++++|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777778778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 004753 212 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 250 (732)
Q Consensus 212 ~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 250 (732)
++.+++.+|.+|..+|++++|+.+|+++++++|+++...
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 888888888888888888888888888888888776543
No 132
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.54 E-value=1.3e-14 Score=155.43 Aligned_cols=219 Identities=13% Similarity=0.102 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++|+.+|.++...|++++|++.|.++ .+...+...+..+...|++++|+.+++.+++..++ +. +..
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~-------i~~ 98 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SY-------VET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-ch-------hHH
Confidence 357899999999999999999999774 45668888999999999999999999988875433 22 234
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.++.+|.+.|+++++.++++. | +..+|..+|..+...|+|++|..+|.++ ..|..++.++.++|++
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp ----------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccH
Confidence 455566667799998888753 4 3459999999999999999999999977 4788999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
++|++.++++ +++..|...+.++...|+++.|..+... +..+ ++-...+..+|.+.|++++|+.++++++.
T Consensus 165 q~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 165 QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 9999999999 4789999999999999999999877765 2244 44455788999999999999999999999
Q ss_pred hCCCChhHHHHHHHH
Q 004753 242 IDPDSRNAGQNRLLA 256 (732)
Q Consensus 242 l~p~~~~a~~~~~la 256 (732)
+++.+..++..+...
T Consensus 236 le~ah~~~ftel~il 250 (449)
T 1b89_A 236 LERAHMGMFTELAIL 250 (449)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 999888887765443
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=2.8e-13 Score=132.91 Aligned_cols=133 Identities=17% Similarity=0.300 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
.++.+|..+...|++++|+..|++++ +| ++.+++++|.++...|++++|+..|+++++.+|+++.++.++|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 46677888888888888888888875 33 6788888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 193 GKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p~~~----------------~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
|++++|++.|+++++..|.+. .+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 888888888888888777655 89999999999999999999999999999998643
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.54 E-value=2.1e-14 Score=131.84 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=114.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 98 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 98 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
..|+++++.+|++...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 224 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~ 224 (732)
++.+++++|.++...|++++|+++|+++++++|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999988766555444443
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=1.1e-13 Score=124.55 Aligned_cols=112 Identities=17% Similarity=0.243 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
|.++.++|..++.+|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++++.|++...+..++.++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999988777888889999
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 114 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 114 (732)
.+|.++...|++++|+++|++++...|+ ++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 9999999999999999999999998875 4433
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.52 E-value=2.1e-13 Score=133.80 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=134.0
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 157 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 157 (732)
..++.+|..+...|++++|+..|++++ +| ++.+++++|.++...|++++|++.|+++++.+|++..+++++|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 346677888888999999999999995 33 789999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 158 RDNLDKAVECYQMALSIKPNFS----------------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
.|++++|+..|+++++..|.+. .++.++|.++...|++++|+..++++++.+|++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------- 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR-------- 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG--------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc--------
Confidence 9999999999999999888766 8999999999999999999999999999999862
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q 004753 222 LYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 222 ~~~~~g~~~eA~~~~~~al~l~p 244 (732)
.+..++|+..+++.....|
T Consensus 156 ----~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 ----HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp ----GGHHHHHHHHHHTTCCCCC
T ss_pred ----cchHHHHHHHHHhcccccc
Confidence 2455666666665544433
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=6e-14 Score=158.98 Aligned_cols=199 Identities=10% Similarity=0.068 Sum_probs=174.3
Q ss_pred HCCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhh---HhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004753 48 NRGD-LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 123 (732)
Q Consensus 48 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 123 (732)
..|+ .++|++.+++++..+|++..+|...+.++..++.- -.....+++++++++++++.+|++..+|...+.++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444 46789999999999999999988888888777620 0000118999999999999999999999999999999
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------
Q 004753 124 ML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-------- 192 (732)
Q Consensus 124 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------- 192 (732)
.+ ++++++++++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|.+++.++...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 99 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhhCCCC
Q 004753 193 ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------AIDAYEQCLKIDPDS 246 (732)
Q Consensus 193 ------g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~e------------A~~~~~~al~l~p~~ 246 (732)
+.+++|++++++++..+|++..+|+.++.++...+++++ |+.+|.+++.++|..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999999999999999999999999888766 566677888777764
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=5.6e-13 Score=124.64 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 191 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 191 (732)
..+..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+.+++++++.+|.++.++..+|.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHh
Q 004753 192 QGKMDAAAEMIEKAIAANPTYAEAYNNLG--VLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 192 ~g~~~eA~~~l~~al~~~p~~~~~~~~La--~~~~~~g~~~eA~~~~~~al~ 241 (732)
.|++++|+.+++++++.+|++..++..++ ..+...|++++|++.++++..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777777666666653333 336666677777766666544
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.51 E-value=7.4e-13 Score=137.42 Aligned_cols=167 Identities=5% Similarity=-0.060 Sum_probs=136.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF--- 178 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 178 (732)
|.....+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+.+++++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 33455667788899999999999999999999877654 346778999999999999999999999875543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-
Q 004753 179 ---SQSLNNLGVVYTVQGKMDAAAEMIEKAI---AANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR- 247 (732)
Q Consensus 179 ---~~~~~~la~~~~~~g~~~eA~~~l~~al---~~~p~~~----~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~- 247 (732)
..++.++|.+|..+|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.++++++++.++..
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 5689999999999999999999999999 4455543 6899999999999999999999999998864321
Q ss_pred ---hHHHHHHHHHhhhccCCcHHH-HHHHHH
Q 004753 248 ---NAGQNRLLAMNYINEGHDDKL-FEAHRD 274 (732)
Q Consensus 248 ---~a~~~~~la~~~~~~~~~~~a-~~~~~~ 274 (732)
.+.....++..|...|+.+++ ...+++
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 244455678889999999888 443443
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.8e-13 Score=121.24 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 191 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 191 (732)
..+..+|..+...|++++|+..|+++++++|++..++.++|.++...|++++|+..++++++++|+++.++..+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 004753 192 QGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLY 223 (732)
Q Consensus 192 ~g~~~eA~~~l~~al~~~------p~~~~~~~~La~~~ 223 (732)
+|++++|+..|+++++++ |++..++..++.+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 555555555555555555 55555554444443
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.50 E-value=6e-13 Score=138.14 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=90.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 004753 90 EGDINQGVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKD 157 (732)
Q Consensus 90 ~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 157 (732)
.|++++|+..++++++..+.... .+..+|.++...+++++|+.++++++++.+.. ..++.++|.+|..
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 44445555555444444444332 12234555555555555555555555532211 2345666666666
Q ss_pred cCCHHHHHHHHHHHHhh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 004753 158 RDNLDKAVECYQMALSI---K----PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYR 224 (732)
Q Consensus 158 ~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~La~~~~ 224 (732)
.|++++|+.+|+++++. . +....++.++|.+|..+|++++|+.++++++++.+.. +.+++++|.+|.
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 66666666666666632 1 1223466777777777777777777777777664322 667778888888
Q ss_pred HcC-CHHHHHHHHHHHHhhC
Q 004753 225 DAG-SISLAIDAYEQCLKID 243 (732)
Q Consensus 225 ~~g-~~~eA~~~~~~al~l~ 243 (732)
.+| .+++|+++|++++.+.
T Consensus 248 ~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 248 KLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHH
Confidence 888 4688888888887664
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=1.6e-13 Score=130.71 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHHHH
Q 004753 124 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DAAAE 200 (732)
Q Consensus 124 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~eA~~ 200 (732)
.|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++++|+++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555 4455555 55555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 201 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 201 ~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
+++++++.+|++..+++.+|.+|...|++++|+.+|+++++++|++.
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 55555555555555555555555555555555555555555555543
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=1.8e-13 Score=130.42 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=120.5
Q ss_pred hHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--H
Q 004753 86 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--D 162 (732)
Q Consensus 86 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~ 162 (732)
.+...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++++|++..++..+|.+ +...|++ +
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999 8899999 9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
+|+.+++++++.+|++..++..+|.++...|++++|+..|+++++.+|++....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999999999999999999999999999999876544
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.49 E-value=1.3e-12 Score=122.02 Aligned_cols=136 Identities=14% Similarity=0.064 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004753 73 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 152 (732)
Q Consensus 73 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 152 (732)
....+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHh
Q 004753 153 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG--VVYTVQGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~eA~~~l~~al~~ 208 (732)
.++...|++++|+.+++++++.+|++..++..++ ..+...|++++|++.++++...
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999999998885554 4488899999999999987654
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.49 E-value=4.3e-13 Score=139.23 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------H
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHF-------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------S 179 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 179 (732)
++.++|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.++++++++.+.. +
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 3444455555555555555555554421 11123355555555555555555555555555543222 4
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 004753 180 QSLNNLGVVYTVQG-KMDAAAEMIEKAIAA 208 (732)
Q Consensus 180 ~~~~~la~~~~~~g-~~~eA~~~l~~al~~ 208 (732)
.++.++|.++..+| ++++|+++|++++.+
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 55666666666666 346666666666554
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=6.2e-14 Score=136.47 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHH
Q 004753 90 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 153 (732)
Q Consensus 90 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 153 (732)
.++++++.+.+.......+.....+..+|..+...|++++|+.+|++++++.|.++ .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 45677777666665555556667788888888888888888888888888887776 78888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 154 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 233 (732)
Q Consensus 154 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~ 233 (732)
++...|++++|+.+++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877776
Q ss_pred -HHHHHHH
Q 004753 234 -DAYEQCL 240 (732)
Q Consensus 234 -~~~~~al 240 (732)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
No 147
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.48 E-value=3.9e-14 Score=152.29 Aligned_cols=173 Identities=13% Similarity=0.090 Sum_probs=135.7
Q ss_pred CCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 004753 465 ALTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 541 (732)
Q Consensus 465 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~ 541 (732)
+++++.+++++++++ .|..+.+++++.++... .|+.+|+++|.+. .+.+++.+.+.|+ .++|.|+|. .
T Consensus 191 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~-----~~~~~~~~~~~~~-~~~v~~~g~---~ 261 (374)
T 2iw1_A 191 GIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-----PRKFEALAEKLGV-RSNVHFFSG---R 261 (374)
T ss_dssp TCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-----CHHHHHHHHHHTC-GGGEEEESC---C
T ss_pred CCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCC-----HHHHHHHHHHcCC-CCcEEECCC---c
Confidence 355677889999987 78889999999888776 5899999999862 2567788888998 589999997 3
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhh
Q 004753 542 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLA 617 (732)
Q Consensus 542 ~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~ 617 (732)
++....|+.+|+++-|+.+ +.|++++|||++|+|||+........ ++.. |-.++++. |.+++++...++.
T Consensus 262 ~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e-----~i~~-~~~g~~~~~~~~~~~l~~~i~~l~ 335 (374)
T 2iw1_A 262 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAH-----YIAD-ANCGTVIAEPFSQEQLNEVLRKAL 335 (374)
T ss_dssp SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTH-----HHHH-HTCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCchh-----hhcc-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 5678888889999999987 66899999999999999965432222 2222 34455543 8999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 618 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 618 ~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
+|++.+.++++..++.... +++..+++.+++.++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 336 TQSPLRMAWAENARHYADT---QDLYSLPEKAADIITG 370 (374)
T ss_dssp HCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHHC
T ss_pred cChHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 9999999999999887654 3566677777776654
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.5e-13 Score=119.27 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 143 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 222 (732)
Q Consensus 143 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~ 222 (732)
..+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC------CCChhHHHH
Q 004753 223 YRDAGSISLAIDAYEQCLKID------PDSRNAGQN 252 (732)
Q Consensus 223 ~~~~g~~~eA~~~~~~al~l~------p~~~~a~~~ 252 (732)
+..+|++++|+..|+++++++ |++..+...
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~ 117 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 117 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHH
Confidence 999999999999999999999 777665544
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=5.8e-13 Score=119.37 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
|....+++.+|.++...|++++|+++|+++++.+|.+..++..+|.++...|++++|+.+++++++..|++..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004753 188 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 228 (732)
Q Consensus 188 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~ 228 (732)
++...|++++|+++++++++.+|.+..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877664
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=5.4e-13 Score=125.49 Aligned_cols=115 Identities=27% Similarity=0.373 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 142 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 142 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
+.+...++.+|.++...|++++|+.+|+++++++|+++.++.++|.+|...|++++|+.+|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 004753 222 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 256 (732)
Q Consensus 222 ~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la 256 (732)
+|..+|++++|+.+|+++++++|++..++.++.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998876665444
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.47 E-value=7e-13 Score=118.08 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004753 109 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 188 (732)
Q Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 188 (732)
.+...+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++..|+++.++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004753 189 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 229 (732)
Q Consensus 189 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~ 229 (732)
+...|++++|+.+++++++..|++..++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776654
No 152
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=2.9e-12 Score=145.11 Aligned_cols=166 Identities=10% Similarity=0.036 Sum_probs=156.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-
Q 004753 91 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK----------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD- 159 (732)
Q Consensus 91 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 159 (732)
...++|++.+.+++..+|++..+|+..+.++...++ ++++++.++++++.+|++..+|...+.++...+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345688999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------
Q 004753 160 -NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----------- 226 (732)
Q Consensus 160 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~----------- 226 (732)
+++++++.++++++.+|.+..+|.+.+.++...| .+++++++++++++.+|.+..+|...+.++..+
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ---CCHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 004753 227 ---GSISLAIDAYEQCLKIDPDSRNAGQNRLLA 256 (732)
Q Consensus 227 ---g~~~eA~~~~~~al~l~p~~~~a~~~~~la 256 (732)
+.+++|++++.+++.++|++..++.++...
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 568999999999999999999998875433
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.45 E-value=8.1e-13 Score=124.27 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
+.....++.+|.++...|++++|+++|+++++++|++..+++++|.++...|++++|+.+|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004753 188 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 223 (732)
Q Consensus 188 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~ 223 (732)
++..+|++++|+.+|+++++++|++...++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999888766655443
No 154
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.45 E-value=1.1e-11 Score=146.90 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=123.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhH
Q 004753 8 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 87 (732)
Q Consensus 8 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 87 (732)
+|.++...|++++|..+|+++- .+.. .+...+...+++++|.++++++ +.+.. ++.+|..+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~v-------WsqLAKAq 1115 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAV-------WSQLAKAQ 1115 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHH-------HHHHHHHH
Confidence 5889999999999999999962 1111 1223333667777777777755 22333 33445555
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 88 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 167 (732)
Q Consensus 88 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 167 (732)
...|++++|+..|.++ +++..|..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.
T Consensus 1116 l~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~ 1188 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEE 1188 (1630)
T ss_pred HhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHH
Confidence 5566777777777665 66777777777777777777777777777776533 2233346666666666664 333
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 168 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 168 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
|. ...+...+..+|..+...|+|++|+.+|.++ ..|..++.+|.++|++++|++.++++
T Consensus 1189 fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1189 FI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 31 1223344556777777777777777777664 35666777777777777777777766
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.45 E-value=6.1e-14 Score=155.39 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=134.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 004753 89 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 153 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 153 (732)
..+++++|+..|+++++..|.....+..+|..++..|++++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888899999999999999999999999999999999988 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 154 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 233 (732)
Q Consensus 154 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~ 233 (732)
++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHH
Q 004753 234 D-AYEQCL 240 (732)
Q Consensus 234 ~-~~~~al 240 (732)
. .|++++
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 344443
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.44 E-value=5.8e-12 Score=111.00 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 190 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 190 (732)
..+++.+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+.+++++++..|.+...+..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004753 191 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 227 (732)
Q Consensus 191 ~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g 227 (732)
..|++++|+.+++++++.+|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777777777777777777777777777777766543
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=1.4e-12 Score=117.34 Aligned_cols=101 Identities=25% Similarity=0.330 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYN 217 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~~~ 217 (732)
+.++.++|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|++.++++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777665543 34677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 218 NLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 218 ~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
++|.++..+|++++|+++|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7788888888888888888888877775
No 158
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.42 E-value=1.6e-12 Score=151.11 Aligned_cols=187 Identities=11% Similarity=0.051 Sum_probs=146.7
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-------~~~~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
+.+.+++++++++ .|..+.+++++.++....|+.+|+|+|++.. .....+.+.+.+++.|+ .++|.|+|.
T Consensus 569 ~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL-~~~V~flG~ 647 (816)
T 3s28_A 569 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKL-NGQFRWISS 647 (816)
T ss_dssp CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTC-BBBEEEECC
T ss_pred CCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCC-CCcEEEccC
Confidence 5667789999988 8999999999999998889999999998731 01267889999999999 599999996
Q ss_pred cCC---cHHHHHhcc-cccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC--CHHHHH
Q 004753 538 ILL---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYV 610 (732)
Q Consensus 538 ~~~---~~~~~~~~~-~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~--~~~~y~ 610 (732)
+.+ ..+....|. .+||++-|+.+ +.|.+++|||++|+|||+...... .-+..-|..+++++ |.++++
T Consensus 648 ~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~------~EiV~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 648 QMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGP------AEIIVHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTH------HHHCCBTTTBEEECTTSHHHHH
T ss_pred ccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCCh------HHHHccCCcEEEeCCCCHHHHH
Confidence 543 356677776 68999999988 669999999999999998432211 11112255555554 889999
Q ss_pred HHHHHhh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH--HHHHhc
Q 004753 611 QLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM--WHRYCK 662 (732)
Q Consensus 611 ~~a~~l~----~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~ 662 (732)
+...++. .|++.+.++++..++..... |+++.++..++++|+.. |+....
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~--fSwe~~a~~ll~lY~~~g~wk~vs~ 777 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEK--YTWQIYSQRLLTLTGVYGFWKHVSN 777 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhHhhhcch
Confidence 8886665 89999999999999887543 89999999999999974 544433
No 159
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.42 E-value=9.3e-13 Score=124.24 Aligned_cols=158 Identities=8% Similarity=0.071 Sum_probs=120.2
Q ss_pred cEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 004753 471 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 548 (732)
Q Consensus 471 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~ 548 (732)
++|+.++++ .|..+.++++|..+ +..|+.+|+++|.+ +..+.+.+.+.+.|+ +|.| |.++ ..+....|
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~---~v~~-g~~~-~~~~~~~~ 72 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALS-KYKQDIVLLLKGKG----PDEKKIKLLAQKLGV---KAEF-GFVN-SNELLEIL 72 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTC-TTGGGEEEEEECCS----TTHHHHHHHHHHHTC---EEEC-CCCC-HHHHHHHH
T ss_pred eEEEEEeccchhcCHHHHHHHHHHh-ccCCCeEEEEEeCC----ccHHHHHHHHHHcCC---eEEE-eecC-HHHHHHHH
Confidence 578888877 89999999999876 56699999999977 456888888999988 7888 9987 78999999
Q ss_pred ccccEEecCCCC-CCcccHHHhhhcCC-CeeecC-CCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHH
Q 004753 549 SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTMA-GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 625 (732)
Q Consensus 549 ~~~Di~Ld~~~~-~g~~t~~eal~~Gv-Pvvt~~-g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~ 625 (732)
+.+|+++-|+.+ +.|.+++|||++|+ |||+.. +.....-+ ..-+. -+...|.+++++...++..|++.+..
T Consensus 73 ~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~ 146 (166)
T 3qhp_A 73 KTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFA-----LDERS-LFEPNNAKDLSAKIDWWLENKLERER 146 (166)
T ss_dssp TTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC-----SSGGG-EECTTCHHHHHHHHHHHHHCHHHHHH
T ss_pred HhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc-----cCCce-EEcCCCHHHHHHHHHHHHhCHHHHHH
Confidence 999999999988 66899999999996 999932 22111111 11111 23357999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHH
Q 004753 626 LRMSLRDLMSKSPVCDGQNFAL 647 (732)
Q Consensus 626 ~r~~lr~~~~~~~~~~~~~~~~ 647 (732)
+++..++.... |+++.++.
T Consensus 147 ~~~~~~~~~~~---~s~~~~~~ 165 (166)
T 3qhp_A 147 MQNEYAKSALN---YTLENSVI 165 (166)
T ss_dssp HHHHHHHHHHH---HC------
T ss_pred HHHHHHHHHHH---CChhhhhc
Confidence 99998876522 66666543
No 160
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.42 E-value=3.1e-13 Score=144.76 Aligned_cols=235 Identities=12% Similarity=0.134 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 82 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 82 (732)
..|...+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|+++++.++++. |+. .++..
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~--------~a~~~ 127 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PNN--------AHIQQ 127 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTC-----C---------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----CcH--------HHHHH
Confidence 36778888999999999999999999885444 77888999999999999999888753 432 15667
Q ss_pred hhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 83 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
+|..+...|++++|..+|.++ ..|..+|.++.++|++++|++.++++ .++..|.....++...|+++
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp ---------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHH
Confidence 778888888999999999977 46889999999999999999999999 46899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 004753 163 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCL 240 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~--~g~~~eA~~~~~~al 240 (732)
.|..+... +. .+++-...+...|.+.|++++|+.++++++.+++....++..||.+|.+ .++..+.++.|...+
T Consensus 195 lA~~~~l~-L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 195 LAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 270 (449)
T ss_dssp HHHHTTTT-TT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS
T ss_pred HHHHHHHH-HH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 99877765 22 3445566788999999999999999999999999999999999998865 457788888888877
Q ss_pred hhCC-----CChhHHHHHHHHHhhhccCCcHHHHH
Q 004753 241 KIDP-----DSRNAGQNRLLAMNYINEGHDDKLFE 270 (732)
Q Consensus 241 ~l~p-----~~~~a~~~~~la~~~~~~~~~~~a~~ 270 (732)
.+.| ++...|.. +...|...++.+.+..
T Consensus 271 ni~k~~~~~~~~~~w~e--~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAE--LVFLYDKYEEYDNAII 303 (449)
T ss_dssp CHHHHHHHHHTTTCHHH--HHHHHHHTTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHH--HHHHHHhhchHHHHHH
Confidence 7777 55555554 4555666666666554
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.41 E-value=6.7e-12 Score=111.58 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004753 76 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 155 (732)
Q Consensus 76 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 155 (732)
.+..+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++.+|++..++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35567778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 004753 156 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 195 (732)
Q Consensus 156 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 195 (732)
...|++++|+.+++++++..|++..++..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998875
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.41 E-value=2.6e-12 Score=116.21 Aligned_cols=104 Identities=18% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 187 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 187 (732)
+..+..++.+|.++...|++++|+.+|+++++.+|++..++.++|.++...|++++|+..++++++++|+++.++..+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 188 VYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 188 ~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
++...|++++|+..|+++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555554443
No 163
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.41 E-value=1.3e-12 Score=127.22 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=124.8
Q ss_pred CCCCCcEEEecCCC---CcCCHHHHHHHHHHH--hHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-cCCcC
Q 004753 466 LTNGFITFGSFNNL---AKITPKVLQVWARIL--CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLIL 539 (732)
Q Consensus 466 ~~~~~~~f~~~~~~---~K~~~~~~~~~~~il--~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~-~~~~~ 539 (732)
++++. ++++++++ .|..+.++++|..+. +..|+.+|+++|.+ .+...+.+++.+.+.| +|.| .|.++
T Consensus 33 ~~~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~--~~~~~~~l~~~~~~~~----~v~~~~g~~~ 105 (200)
T 2bfw_A 33 MDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG----NVKVITEMLS 105 (200)
T ss_dssp CCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--CHHHHHHHHHHHHHCT----TEEEECSCCC
T ss_pred CCCCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC--ChHHHHHHHHHHHhcC----CEEEEeccCC
Confidence 44443 67777765 599999999999998 88899999999876 2236788888888887 8999 99987
Q ss_pred CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC--CHHHHHHHHHHh
Q 004753 540 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQL 616 (732)
Q Consensus 540 ~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~--~~~~y~~~a~~l 616 (732)
..+....|+.+|++|.|+.+ +.+++++|||++|+|||+.....+ ..++ -|-.+++.. |.+++++...++
T Consensus 106 -~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~-----~e~~--~~~~g~~~~~~~~~~l~~~i~~l 177 (200)
T 2bfw_A 106 -REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGL-----RDII--TNETGILVKAGDPGELANAILKA 177 (200)
T ss_dssp -HHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHH-----HHHC--CTTTCEEECTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCCh-----HHHc--CCCceEEecCCCHHHHHHHHHHH
Confidence 67899999999999999988 558899999999999998432211 1122 355666665 999999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhh
Q 004753 617 AS-DVTALANLRMSLRDLMS 635 (732)
Q Consensus 617 ~~-d~~~~~~~r~~lr~~~~ 635 (732)
.+ |++.+.++++..++...
T Consensus 178 ~~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 178 LELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp HHCCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHH
Confidence 99 99999999998887654
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.41 E-value=3.7e-13 Score=130.94 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhh
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 86 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 86 (732)
..+......|++++|.+.++......+.....+..+|..++..|++++|+.+|++++++.|.+......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ----------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-----------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-----------
Confidence 344445556666666666665555555556666667777777777777777777776666654311000
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 87 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 166 (732)
Q Consensus 87 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 166 (732)
........+ ...++.++|.++...|++++|+.+++++++++|++..+++.+|.++..+|++++|+.
T Consensus 78 ---------~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 78 ---------ILLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp ---------HHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---------hHHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence 000000000 136778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 167 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 199 (732)
Q Consensus 167 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 199 (732)
.|+++++++|++..++..++.++...++.+++.
T Consensus 144 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 144 NLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877777666
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.40 E-value=2e-12 Score=115.11 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 226 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~ 226 (732)
.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..+++.+|.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCh
Q 004753 227 GSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 227 g~~~eA~~~~~~al~l~p~~~ 247 (732)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777777777777777777653
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=2.8e-12 Score=124.28 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=130.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHH
Q 004753 89 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ 162 (732)
..|++++|.+.++......+....++..+|.++...|++++|+.++++++++ .+....++.++|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4689999999666555433366789999999999999999999999999984 3445778999999999999999
Q ss_pred HHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCH
Q 004753 163 KAVECYQMALSI---KPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGSI 229 (732)
Q Consensus 163 ~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~~----~~~~~~La~~~~~~g~~ 229 (732)
+|+.++++++++ .+++ ..++.++|.++...|++++|+.+++++++..+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999988 4433 45789999999999999999999999997632 22 34578999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 004753 230 SLAIDAYEQCLKIDPD 245 (732)
Q Consensus 230 ~eA~~~~~~al~l~p~ 245 (732)
++|+.++++++++...
T Consensus 164 ~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987443
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.40 E-value=3.2e-13 Score=149.58 Aligned_cols=160 Identities=13% Similarity=0.130 Sum_probs=120.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHH
Q 004753 15 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 94 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 94 (732)
.+++++|+..|+++++..|....++..+|.+++..|++++|+..|++++++.|.+.... -+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-------------------~~ 307 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-------------------EK 307 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-------------------HH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-------------------hH
Confidence 44667788888888888899999999999999999999999999999999988864100 00
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 95 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 95 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
+. .+..+....+++++|.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|++++++
T Consensus 308 ~~-------~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 308 ES-------KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 00 01122234567777788888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 175 KPNFSQSLNNLGVVYTVQGKMDAAAE 200 (732)
Q Consensus 175 ~p~~~~~~~~la~~~~~~g~~~eA~~ 200 (732)
+|++..++..++.++...+++++|.+
T Consensus 381 ~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 381 NPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777788888888877777777664
No 168
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.39 E-value=4.1e-12 Score=113.73 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=110.9
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
...+..+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+++++++++.+|.+..++.++|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34566677777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 194 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 194 (732)
..|++++|+.+++++++.+|.+..++..++.++..+|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988764
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.39 E-value=1.7e-12 Score=119.52 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAA------ 208 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~eA~~~l~~al~~------ 208 (732)
.+.++|..+...|++++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4445555555555555555555555555555 32 38888888888888888888888888888
Q ss_pred -CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 209 -NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 209 -~p~~~~~~----~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999 99999999999999999999999999998765543
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.39 E-value=5.5e-12 Score=122.21 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=102.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcC
Q 004753 12 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 91 (732)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g 91 (732)
++..|++++|++.++......+....++..+|.++...|++++|+.++++++++..... .....+.++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-DHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcC
Confidence 35678999999966555443336788899999999999999999999999988644322 12234556677777777777
Q ss_pred CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHc
Q 004753 92 DINQGVAYYKKALYY---NWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C----AEACNNLGVIYKDR 158 (732)
Q Consensus 92 ~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~ 158 (732)
++++|+.+++++++. .+++ ..++.++|.++...|++++|+.++++++++.+. + ..++.++|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888777777766 3322 345666777777777777777777776654211 1 22344555555555
Q ss_pred CCHHHHHHHHHHHHhh
Q 004753 159 DNLDKAVECYQMALSI 174 (732)
Q Consensus 159 g~~~~A~~~~~~al~~ 174 (732)
|++++|+.++++++++
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 5555555555555543
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1e-11 Score=135.92 Aligned_cols=206 Identities=10% Similarity=0.054 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-----------------EAYCNMGVIYKNRGDLESAIACYERCLA 64 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~~A~~~~~~al~ 64 (732)
|.+....|..+...|+|++|++.|.++++..+... .++..+|.+|...|++++|++++.++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677889999999999999999999999877632 4688999999999999999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 65 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAYGEMLKFDMAIVFYELAF 138 (732)
Q Consensus 65 ~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 138 (732)
..+...... ....+...++.++...|++++|+.++++++...+ ....++..+|.+|...|+|++|..++++++
T Consensus 84 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 84 YMMQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 877654332 2245566788888889999999999999987632 236788999999999999999999999988
Q ss_pred hc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 139 HF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NF----SQSLNNLGVVYTVQGKMDAAAEMIEKA 205 (732)
Q Consensus 139 ~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~~~~~g~~~eA~~~l~~a 205 (732)
.. .+....++..++.+|...|++++|..++++++...+ .. ...+..+|.++...+++++|..+|.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 75 233467899999999999999999999999987632 22 346778888888999999999999999
Q ss_pred HHh
Q 004753 206 IAA 208 (732)
Q Consensus 206 l~~ 208 (732)
++.
T Consensus 243 ~~~ 245 (434)
T 4b4t_Q 243 FES 245 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.38 E-value=1.4e-11 Score=126.61 Aligned_cols=225 Identities=13% Similarity=0.000 Sum_probs=140.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHH---------HHHHHHHH------------HHhhCC
Q 004753 10 VVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLE---------SAIACYER------------CLAVSP 67 (732)
Q Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~---------~A~~~~~~------------al~~~p 67 (732)
...+..|+|.+++.-.. +..|.+ ......+.++|+.+|++. .|+..|-+ .++..+
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~~~~~ 97 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQ 97 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTTTSC
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 34567899998888443 233332 345556667777777653 23333332 222222
Q ss_pred CCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 004753 68 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-- 143 (732)
Q Consensus 68 ~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 143 (732)
.... .+..+|.++...|++++|++++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+
T Consensus 98 ~~~~-------~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~ 170 (310)
T 3mv2_B 98 NSPY-------ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV 170 (310)
T ss_dssp CCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH
T ss_pred CCcH-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc
Confidence 2211 223455556666777777777777777765 66777777777777777777777777777777762
Q ss_pred --CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 004753 144 --CAEACNNL--GVIYKDRD--NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------- 208 (732)
Q Consensus 144 --~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~------- 208 (732)
+......+ +++....| ++++|...|+++.+..|+ ....+.+ ++..+|++++|.+.++++++.
T Consensus 171 ~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k 247 (310)
T 3mv2_B 171 SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQK 247 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccc
Confidence 12233333 33344445 777777777777766665 2233333 677777777777777766655
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 209 ---NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 209 ---~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
+|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+
T Consensus 248 ~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 248 ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 36677777777777777776 6777777777777777644
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=8.1e-12 Score=112.93 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=102.2
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004753 139 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 218 (732)
Q Consensus 139 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 218 (732)
..++.++..+..+|.++...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+..++++++.+|+++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 219 LGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 219 La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
+|.++...|++++|+.+|+++++++|+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999987
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.38 E-value=1.2e-11 Score=107.86 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
.++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004753 193 GKMDAAAEMIEKAIAANPTYAEAYNNLGV 221 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p~~~~~~~~La~ 221 (732)
|++++|++.++++++.+|++..++..++.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44444444444444444444444444433
No 175
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.37 E-value=6e-13 Score=127.23 Aligned_cols=150 Identities=11% Similarity=-0.017 Sum_probs=110.9
Q ss_pred CCCCCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHH--HcCCCCCcEEEcCCcC
Q 004753 464 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE--QLGLESLRVDLLPLIL 539 (732)
Q Consensus 464 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~--~~Gv~~~rv~~~~~~~ 539 (732)
..++++..+|++++++ .|..+.+++++.++ |+.+|+++|.+.. .+.+++.+. ..|+ .++|.|.|.++
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~----~~~l~~~~~~~~~~l-~~~v~~~g~~~ 87 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK----GDHAERYARKIMKIA-PDNVKFLGSVS 87 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT----TSTHHHHHHHHHHHS-CTTEEEEESCC
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc----HHHHHHHHHhhhccc-CCcEEEeCCCC
Confidence 3456677778888887 67777777766654 8999999997632 245666677 7788 58999999987
Q ss_pred CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccc-cCCHHHHHHHHHHhh
Q 004753 540 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-AKNEDEYVQLALQLA 617 (732)
Q Consensus 540 ~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~i-a~~~~~y~~~a~~l~ 617 (732)
.++....|+.+|+++-|+.+ +.+++++|||++|+|||+.....+ .-+..-|-.+++ ..|.+++++...++.
T Consensus 88 -~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~------~e~i~~~~~g~~~~~d~~~l~~~i~~l~ 160 (177)
T 2f9f_A 88 -EEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGF------KETVINEKTGYLVNADVNEIIDAMKKVS 160 (177)
T ss_dssp -HHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHH------HHHCCBTTTEEEECSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCH------HHHhcCCCccEEeCCCHHHHHHHHHHHH
Confidence 67889999999999998766 668899999999999998542211 111112444545 589999999999999
Q ss_pred cCHHH-HHHHHHH
Q 004753 618 SDVTA-LANLRMS 629 (732)
Q Consensus 618 ~d~~~-~~~~r~~ 629 (732)
.|++. ++++|+.
T Consensus 161 ~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 161 KNPDKFKKDCFRR 173 (177)
T ss_dssp HCTTTTHHHHHHH
T ss_pred hCHHHHHHHHHHH
Confidence 99875 3444433
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.37 E-value=4.1e-12 Score=113.12 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35667777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 004753 193 GKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p~~~ 213 (732)
|++++|+..++++++.+|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888877777654
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.36 E-value=3.9e-12 Score=119.29 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHF------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
.+...|..++..|++++|+..|++++.+ +|....++.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4445555555555555555555555554 3333344444444444444444444444444444
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 004753 175 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVL 222 (732)
Q Consensus 175 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-~~~~~La~~ 222 (732)
+|+++.+++.+|.++..+|++++|+..|+++++++|++. .+...++.+
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444 333333333
No 178
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.36 E-value=6.8e-12 Score=134.33 Aligned_cols=318 Identities=14% Similarity=0.010 Sum_probs=181.6
Q ss_pred ccccccCCCcccChhhhhhhHHhccccCCcEEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC--------------
Q 004753 299 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------------- 364 (732)
Q Consensus 299 lrIGyvS~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------------- 364 (732)
.+|.+++....+|- .....+.......+++|.+++...... .. .+...+-.+..+...
T Consensus 7 mkIl~~~~~~gG~~--~~~~~la~~L~~~G~~V~v~~~~~~~~--~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T 1f0k_A 7 KRLMVMAGGTGGHV--FPGLAVAHHLMAQGWQVRWLGTADRME--AD----LVPKHGIEIDFIRISGLRGKGIKALIAAP 78 (364)
T ss_dssp CEEEEECCSSHHHH--HHHHHHHHHHHTTTCEEEEEECTTSTH--HH----HGGGGTCEEEECCCCCCTTCCHHHHHTCH
T ss_pred cEEEEEeCCCccch--hHHHHHHHHHHHcCCEEEEEecCCcch--hh----hccccCCceEEecCCccCcCccHHHHHHH
Confidence 46777775543322 222344455555678888887643211 11 111112223333211
Q ss_pred -----CHHHHHHHHHhCCCcEEEeCCCCCCCCchhhhc--cCCCCeEEecccCC-CC---CCCCCccEEEecCCCCCcCc
Q 004753 365 -----DEKKVAAMVREDKIDILVELTGHTANNKLGMMA--CQPAPVQVTWIGYP-NT---TGLPTIDYRITDSLADPPET 433 (732)
Q Consensus 365 -----~~~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a--~r~Apvq~~~~g~p-~t---~g~~~~Dy~~~d~~~~p~~~ 433 (732)
...++.+.|++.++||++-..... +-...++ ..-.|+.++..+.. +. .-....|.+++.. +.
T Consensus 79 ~~~~~~~~~l~~~l~~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~d~v~~~~---~~-- 151 (364)
T 1f0k_A 79 LRIFNAWRQARAIMKAYKPDVVLGMGGYV--SGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAF---PG-- 151 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEECSSTT--HHHHHHHHHHTTCCEEEEECSSSCCHHHHHHTTTCSEEEESS---TT--
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCcC--chHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCEEEecC---hh--
Confidence 113567788889999997643321 1112222 22357777665532 10 0123467776531 11
Q ss_pred ccCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCC-CcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE-EEEecC
Q 004753 434 KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNG-FITFGSFNNL--AKITPKVLQVWARILCAVPNSR-LVVKCK 507 (732)
Q Consensus 434 ~~~~~E~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~-l~l~~~ 507 (732)
.+. ++..+|+..- .|.+. ......+++.+ .+++.+.+++ .|..+.+++++.++.. +.+ ++++|.
T Consensus 152 --~~~-~~~~i~n~v~~~~~~~~----~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i~G~ 221 (364)
T 1f0k_A 152 --AFP-NAEVVGNPVRTDVLALP----LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQSGK 221 (364)
T ss_dssp --SSS-SCEECCCCCCHHHHTSC----CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEECCT
T ss_pred --hcC-CceEeCCccchhhcccc----hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEEcCC
Confidence 122 3444444211 01110 00001123333 4455666666 4655666677766543 567 566676
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccc-
Q 004753 508 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAH- 586 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~- 586 (732)
+ + .+.+.+.+++.|+ ++|.|.|++ .+...+|..+|+++-|+ |++|++|||++|+|||+.+-.....
T Consensus 222 ~----~-~~~l~~~~~~~~~--~~v~~~g~~---~~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~~~g~~~~ 288 (364)
T 1f0k_A 222 G----S-QQSVEQAYAEAGQ--PQHKVTEFI---DDMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVPFQHKDRQ 288 (364)
T ss_dssp T----C-HHHHHHHHHHTTC--TTSEEESCC---SCHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECCCCCTTCH
T ss_pred c----h-HHHHHHHHhhcCC--CceEEecch---hhHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEeeCCCCchh
Confidence 5 2 3678888888888 479999997 35667777899999885 5899999999999999965331110
Q ss_pred -cchhHHhhhcCCCccccC--C--HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 004753 587 -NVGVSLLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 660 (732)
Q Consensus 587 -r~~~s~l~~~gl~~~ia~--~--~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 660 (732)
...+..+...|. ++++. | .+++.+...++ |++.++++++..++.. ..|+++.++..+++.|+++-..|
T Consensus 289 q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~~ 361 (364)
T 1f0k_A 289 QYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVARALEHHH 361 (364)
T ss_dssp HHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHhhc
Confidence 011334555676 54443 2 67777766666 9999999999888653 35899999999999999876554
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.6e-11 Score=112.18 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 184 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 184 (732)
|.....++.+|..+...|++++|+++|+++++.+|++ ..++.++|.++...|++++|+..++++++.+|++..++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4445555555555555555555555555555555554 4555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 185 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 222 (732)
Q Consensus 185 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~ 222 (732)
+|.++...|++++|+.+|+++++.+|++..++..++.+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555555555555555555555555555555444443
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.35 E-value=2.3e-12 Score=118.70 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Q 004753 114 MYNLGVAYGEMLKFDMAIVFYELAFHFNPH-------CA-----EACNNLGVIYKDRDNLDKAVECYQMALSI------- 174 (732)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 174 (732)
+.+.|..+...|+|++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..|++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344444444444444444444444444444 22 26666666666666666666666666666
Q ss_pred CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 175 KPNFSQSL----NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 175 ~p~~~~~~----~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 77777777 7777777777777777777777777776654433
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=2.5e-13 Score=151.10 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 192 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 192 (732)
++..+|..+...|++++|+++|+++++++|++..++.++|.++..+|++++|++.++++++++|+++.++.++|.+|..+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 44556667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCChh
Q 004753 193 GKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRN 248 (732)
Q Consensus 193 g~~~eA~~~l~~al~~~p~~~~~~~~La~~--~~~~g~~~eA~~~~~-----------~al~l~p~~~~ 248 (732)
|++++|++.|+++++++|++..++..++.+ +..+|++++|++.++ ++++++|+...
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 888888888888888888888888888877 778888888888888 88888776543
No 182
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.35 E-value=3.9e-11 Score=105.61 Aligned_cols=117 Identities=39% Similarity=0.591 Sum_probs=109.6
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
+.++..+|..+...|++++|++.++++++..|.+..++..+|.++...|++++|+.+++++++..|.+...+..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34566677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 193 (732)
..|++++|+.+++++++..|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987654
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=1.5e-12 Score=144.88 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=123.0
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 156 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 156 (732)
+..+..+|..+...|++++|+++|+++++.+|++..++.++|.+|..+|++++|++.++++++++|++..+++++|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 004753 157 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 212 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~eA~~~l~-----------~al~~~p~~ 212 (732)
.+|++++|++.|+++++++|++..++.+++.+ +..+|++++|++.++ ++++..|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999988 889999999999999 777776654
No 184
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=3.4e-11 Score=104.89 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 223 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~ 223 (732)
....++.+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 224 RDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 224 ~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
...|++++|+.+|+++++++|++..+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999998877654
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.34 E-value=6.2e-12 Score=117.89 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=108.9
Q ss_pred HHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALYY------------------NWHYADAMYNLGVAYGEMLKFDMAIVFYEL 136 (732)
Q Consensus 75 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (732)
..+..+...|..+...|++++|+..|++++.. +|.+..++.++|.+|..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44667888899999999999999999999999 677778999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCC
Q 004753 137 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGK 194 (732)
Q Consensus 137 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 194 (732)
+++++|++..+++.+|.++..+|++++|+..|+++++++|++. .+...++.+....++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 667777776655443
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.33 E-value=7.2e-12 Score=108.25 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 004753 141 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 218 (732)
Q Consensus 141 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~~~~ 218 (732)
+|++..++..+|.++...|++++|+.+++++++..|.+..++.++|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46666777777777777888888888888888877877778888888888888888888888888888887 7888888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 004753 219 LGVLYRDA-GSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 219 La~~~~~~-g~~~eA~~~~~~al~l~p~~ 246 (732)
+|.++... |++++|++++++++...|++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888888 88888888888888877765
No 187
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.32 E-value=1.4e-11 Score=137.58 Aligned_cols=170 Identities=12% Similarity=0.004 Sum_probs=133.8
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EcCCcCCcHHHH
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHM 545 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~-~~~~~~~~~~~~ 545 (732)
+.+++++++++ .|..+.++++|..+.+ ++.+|+|+|.| .+..++.+++.+.+.| ++|+ |.|. + ..+..
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~ 361 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAG--DPVLQEGFLAAAAEYP---GQVGVQIGY-H-EAFSH 361 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEE--CHHHHHHHHHHHHHST---TTEEEEESC-C-HHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCC--chHHHHHHHHHHHhCC---CcEEEeCCC-C-HHHHH
Confidence 66788888876 8999999999998876 58999999876 3346788888888875 7886 7777 3 45557
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcC---------CCccccC--CHHHHHHHH
Q 004753 546 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG---------LKHLIAK--NEDEYVQLA 613 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~g---------l~~~ia~--~~~~y~~~a 613 (732)
..|+.+||++-|+.+ +.|++++|||++|+|||+.... |..-+..-| ..++++. |.+++++..
T Consensus 362 ~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~g------g~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i 435 (485)
T 2qzs_A 362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTG------GLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAI 435 (485)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSH------HHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHH
T ss_pred HHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCC------CccceeccCccccccccccceEEECCCCHHHHHHHH
Confidence 889999999999988 6689999999999999984322 111122223 4566653 899999999
Q ss_pred HHhh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 614 LQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 614 ~~l~---~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
.++. .|++.+.++++..++ ..|+++.+++.++++|+++..
T Consensus 436 ~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~ly~~~~~ 478 (485)
T 2qzs_A 436 RRAFVLWSRPSLWRFVQRQAMA-----MDFSWQVAAKSYRELYYRLKL 478 (485)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHhhh
Confidence 9998 799988888877653 459999999999999998864
No 188
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=9.7e-11 Score=134.54 Aligned_cols=224 Identities=9% Similarity=0.031 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHH
Q 004753 19 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 97 (732)
Q Consensus 19 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~ 97 (732)
+.....|++++...|.++..|+..+..+...|+.++|. ..|++++...|.....+..++ ......|++++|.
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a-------~~ee~~~~~e~aR 398 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLS-------EQYELNTKIPEIE 398 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHHHhCCHHHHH
Confidence 45678899999999999999999999999999999997 999999999998865444443 3444567999999
Q ss_pred HHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Q 004753 98 AYYKKALYY-----------NWH-----------YADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVI 154 (732)
Q Consensus 98 ~~~~~al~~-----------~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~ 154 (732)
+.|++++.. .|. ...+|...+.+..+.|+.+.|...|.+|++. .+.....|...+.+
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999975 243 3457888899989999999999999999987 54556778777877
Q ss_pred HHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHH
Q 004753 155 YKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNLGVLYRDAGSIS 230 (732)
Q Consensus 155 ~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~~~~La~~~~~~g~~~ 230 (732)
....+ +.+.|..+|+++++..|+++..+...+......|+.+.|..+|++++...|+ ...+|..........|+.+
T Consensus 479 E~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 479 EYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 77765 4899999999999999999999999999999999999999999999998873 5678888899999999999
Q ss_pred HHHHHHHHHHhhCCCChhH
Q 004753 231 LAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 231 eA~~~~~~al~l~p~~~~a 249 (732)
.+.+.++++.+..|++...
T Consensus 559 ~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 559 SVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHHHhCCCCcHH
Confidence 9999999999999987543
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.32 E-value=3.6e-11 Score=107.35 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 004753 149 NNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVL 222 (732)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~La~~ 222 (732)
+.+|..+...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3444444444444444444444444444443 344444444444444444444444444444444 4444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 223 YRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 223 ~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
+..+|++++|+.+|+++++..|++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 44444444444444444444444433
No 190
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.9e-11 Score=108.87 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=107.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 140 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 140 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
.+|.+...++.+|..+...|++++|+.+|+++++..|++ ..++.++|.++...|++++|+.+++++++.+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457789999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 217 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 217 ~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
+.+|.++..+|++++|+.+|+++++++|++..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 999999999999999999999999999999877654
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.31 E-value=1e-12 Score=139.44 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004753 74 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 153 (732)
Q Consensus 74 ~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 153 (732)
...+..+..+|..+...|++++|+.+|++++...|.+.. +...++++++...+. ..+++++|.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~ 238 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHH
Confidence 344556666666666777777777777777666665431 122333333333221 147889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHH
Q 004753 154 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY-RDAGSISLA 232 (732)
Q Consensus 154 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~-~~~g~~~eA 232 (732)
++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998884 455677888
Q ss_pred HHHHHHHHhhCCCChh
Q 004753 233 IDAYEQCLKIDPDSRN 248 (732)
Q Consensus 233 ~~~~~~al~l~p~~~~ 248 (732)
...|++++...|++..
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 8999999998887653
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=3.7e-11 Score=131.37 Aligned_cols=207 Identities=13% Similarity=0.059 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH----------HHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHH
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI----------AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 105 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----------~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 105 (732)
|.+....|..+...|++++|++.|.++++..++... .......++..+|.+|...|++++|++++++++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345667788899999999999999999999887532 2334456788899999999999999999999998
Q ss_pred hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 106 YNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALS 173 (732)
Q Consensus 106 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 173 (732)
..+... .+...++.++...|++++|++++++++... +....++.++|.++...|++++|+.++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 765532 345678888888999999999999998763 23367899999999999999999999999987
Q ss_pred h------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 174 I------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---TY----AEAYNNLGVLYRDAGSISLAIDAYEQCL 240 (732)
Q Consensus 174 ~------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p---~~----~~~~~~La~~~~~~g~~~eA~~~~~~al 240 (732)
. .+....++..++.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6 233466899999999999999999999999987632 22 3567788999999999999999999998
Q ss_pred hh
Q 004753 241 KI 242 (732)
Q Consensus 241 ~l 242 (732)
+.
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 193
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.31 E-value=1.8e-11 Score=136.57 Aligned_cols=168 Identities=13% Similarity=-0.023 Sum_probs=132.1
Q ss_pred CcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EcCCcCCcHHHHH
Q 004753 470 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHMQ 546 (732)
Q Consensus 470 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~-~~~~~~~~~~~~~ 546 (732)
.++|++++++ .|..+.++++|.++.. ++.+|+|+|.| .+..++.+++...+.| ++|+ |.|. + ..+...
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~~ 361 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAG--DVALEGALLAAASRHH---GRVGVAIGY-N-EPLSHL 361 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECB--CHHHHHHHHHHHHHTT---TTEEEEESC-C-HHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCC--chHHHHHHHHHHHhCC---CcEEEecCC-C-HHHHHH
Confidence 5688899987 7999999999998876 58999999976 3346788888888875 6887 7777 3 455568
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcC---------CCcccc--CCHHHHHHHHH
Q 004753 547 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG---------LKHLIA--KNEDEYVQLAL 614 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~g---------l~~~ia--~~~~~y~~~a~ 614 (732)
.|+.+||++-|+.+ +.|.+++|||++|+|||+.... |..-+..-| ..+++. .|.+++++...
T Consensus 362 ~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~g------g~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~ 435 (485)
T 1rzu_A 362 MQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTG------GLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIR 435 (485)
T ss_dssp HHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSH------HHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHH
T ss_pred HHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCC------ChhheecccccccccccCCcceEeCCCCHHHHHHHHH
Confidence 89999999999988 6699999999999999984322 111112223 455664 48899999999
Q ss_pred Hhh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 615 QLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 615 ~l~---~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
++. .|++.+.++++..++ ..|+++.+++.++++|+++.
T Consensus 436 ~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~~y~~~~ 476 (485)
T 1rzu_A 436 RTVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLI 476 (485)
T ss_dssp HHHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHH-----HhCChHHHHHHHHHHHHHhh
Confidence 988 899888888877652 46999999999999998864
No 194
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.29 E-value=1.9e-11 Score=108.66 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLNN 184 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~ 184 (732)
..+..+|.++...|++++|+.+++++++.+|.+..++.++|.++...|++++|+.+++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555554443 445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 185 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 224 (732)
Q Consensus 185 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~ 224 (732)
+|.++...|++++|+++|+++++..| +......++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555554 3444444444443
No 195
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=8.1e-11 Score=105.00 Aligned_cols=119 Identities=17% Similarity=0.055 Sum_probs=93.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004753 1 MQPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 77 (732)
Q Consensus 1 ~a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 77 (732)
++++++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++..|++.. ..
T Consensus 1 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~ 76 (129)
T 2xev_A 1 MARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK----AA 76 (129)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT----HH
T ss_pred CcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc----cH
Confidence 467889999999999999999999999999999887 79999999999999999999999999999998731 12
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 123 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 123 (732)
.+++.+|.++...|++++|+..|+++++..|++..+......+...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 2344455555566788888888888888888877665555544433
No 196
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=7.9e-11 Score=120.99 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhhhhHhhcCCHHHHHH
Q 004753 21 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP--NFEIAKNNMAIALTDLGTKVKLEGDINQGVA 98 (732)
Q Consensus 21 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~ 98 (732)
|+..+++.++..+....++..+|.++...|++++|++.+.+.+..+| .+.+.. ..+..++..+|+.+.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~-------~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELL-------LLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHH-------HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHH-------HHHHHHHHHCCCHHHHHH
Confidence 66667776666556677788999999999999999999999999887 444443 344555666779999999
Q ss_pred HHHHHHHhCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 99 YYKKALYYNWH----YADAMYNL--GVAYGEML--KFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECY 168 (732)
Q Consensus 99 ~~~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~ 168 (732)
.++++.+.+|+ +..+...+ +.+....| ++++|...|+++.+..|+ ....+++ ++..+|++++|.+.+
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 99999999883 23334444 44466666 999999999999888886 3344444 899999999999999
Q ss_pred HHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 169 QMALSI----------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 169 ~~al~~----------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
+.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 988876 48899999999999999998 99999999999999998665
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.28 E-value=6.9e-12 Score=133.05 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 190 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 190 (732)
.+++++|.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999988 44
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Q 004753 191 VQGKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 191 ~~g~~~eA~~~l~~al~~~p~~~ 213 (732)
..+..+++...|.+++...|+++
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 56778899999999999988764
No 198
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.28 E-value=1.7e-11 Score=105.90 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 004753 107 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNN 184 (732)
Q Consensus 107 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 184 (732)
+|++..++..+|.++...|++++|+.+++++++.+|.+..++.++|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57777888889999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 004753 185 LGVVYTVQ-GKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 185 la~~~~~~-g~~~eA~~~l~~al~~~p~~ 212 (732)
+|.++... |++++|++++++++...|..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999888764
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.28 E-value=3e-11 Score=129.63 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 114 MYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
+..+|..+...|++++|++.|+++++ .+|.+..++.++|.++..+|++++|+.+++++++++|+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 44444455555555555555555544 66667778888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 234 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~ 234 (732)
++.+++.+|.+|..+|++++|++.|+++++++|++..++..++.++..+++++++.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888877776654
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.27 E-value=4.4e-11 Score=128.39 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 69 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY----------------YNWHYADAMYNLGVAYGEMLKFDMAIV 132 (732)
Q Consensus 69 ~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~ 132 (732)
........+..+..+|..+...|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|++
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 3444556677788899999999999999999999998 677788999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 133 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 201 (732)
Q Consensus 133 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 201 (732)
+++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++.+.
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988887654
No 201
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.27 E-value=3.6e-11 Score=106.93 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++..|++.........++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999998765433444456677
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 124 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 124 (732)
.+|.++...|++++|+++|+++++..| +......++.+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 777777778888888888888888887 577777776665443
No 202
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=3.1e-11 Score=111.43 Aligned_cols=98 Identities=28% Similarity=0.325 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHH
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAE 214 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p------~~~~ 214 (732)
++..+|.++...|++++|+.+++++++..+.. ..++.++|.++...|++++|+++++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44455555555555555555555555443221 33556666666666666666666666665421 1134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 215 AYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 215 ~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
++..+|.++...|++++|++++++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777776544
No 203
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.25 E-value=4.6e-11 Score=110.28 Aligned_cols=103 Identities=25% Similarity=0.411 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC-----
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----- 110 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 110 (732)
..++..+|.++...|++++|+.+++++++..+... .....+.++..+|.++...|++++|+.+++++++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 34566666666677777777777776666544321 112234455555555555566666666666655543221
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 111 -ADAMYNLGVAYGEMLKFDMAIVFYELAFH 139 (732)
Q Consensus 111 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 139 (732)
..++.++|.++...|++++|+++++++++
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23444445555555555555555554444
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.24 E-value=2.1e-11 Score=112.00 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 004753 160 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--- 226 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~--- 226 (732)
.+++|++.++++++++|+++++++++|.++...++ +++|+..|+++++++|++..+|+++|.+|..+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 34445555555555555555555555554444443 45777777777777777777777777777766
Q ss_pred --------CCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 227 --------GSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 227 --------g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
|++++|+++|+++++++|++......
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999999988655443
No 205
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.23 E-value=1.8e-11 Score=131.63 Aligned_cols=246 Identities=13% Similarity=0.040 Sum_probs=149.8
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCchhhhccCCCCeEEecccCCCC----CCCCCccEEEecCCCCCcCcccC-Cccc
Q 004753 366 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNT----TGLPTIDYRITDSLADPPETKQK-HVEE 440 (732)
Q Consensus 366 ~~~~~~~i~~d~~Dilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~p~t----~g~~~~Dy~~~d~~~~p~~~~~~-~~E~ 440 (732)
...+.+.|+..++||++-...+...+.+. .+.+ |+-+........ .-+..+|.+++-.-.+-...... .. +
T Consensus 100 ~~~l~~~l~~~~pDiv~~~~~~~~~~~~~-~~~~--p~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~g~~-k 175 (374)
T 2xci_A 100 PFSVKRFEELSKPKALIVVEREFWPSLII-FTKV--PKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAK-R 175 (374)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCCHHHHH-HCCS--CEEEEEECCCCCHHHHHHHTTCSEEEESCHHHHHHHHTTTCC-S
T ss_pred HHHHHHHHHHhCCCEEEEECccCcHHHHH-HHhC--CEEEEEeecCchHHHHHHHHhCCEEEECCHHHHHHHHHcCCC-e
Confidence 46788899999999998532222222111 1223 754322111110 01244677765320000000111 22 6
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-HHHH
Q 004753 441 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFL 519 (732)
Q Consensus 441 l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~-~~~~ 519 (732)
+..+|+.. |.+.... .. .+.. . ++....+..|..+.++++|.++.++.|+.+|+|+|.+ +.+ +.++
T Consensus 176 i~vi~n~~--f~~~~~~---~~--~l~~-~-vi~~~~~~~k~~~~ll~A~~~l~~~~p~~~lvivG~g----~~~~~~l~ 242 (374)
T 2xci_A 176 VFSCGNLK--FICQKGK---GI--KLKG-E-FIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRH----IENAKIFE 242 (374)
T ss_dssp EEECCCGG--GCCCCCS---CC--CCSS-C-EEEEEEECGGGHHHHHHHHHHHHTTCTTCEEEEEESS----GGGHHHHH
T ss_pred EEEcCCCc--cCCCcCh---hh--hhcC-C-EEEEEeCCCchHHHHHHHHHHHHhhCCCcEEEEECCC----HHHHHHHH
Confidence 77778753 3332111 11 1222 2 2333335678889999999999999999999999876 444 5788
Q ss_pred HHHHHcCCCC-------CcEEEcCCcCCcHHHHHhcccccEEecCCCC--CCcccHHHhhhcCCCeeecCC-Ccccccch
Q 004753 520 STLEQLGLES-------LRVDLLPLILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAG-SVHAHNVG 589 (732)
Q Consensus 520 ~~~~~~Gv~~-------~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~--~g~~t~~eal~~GvPvvt~~g-~~~~~r~~ 589 (732)
+.+++.|+.. ++|.|.+.. .+...+|+.+||++-++-+ +||.+++|||++|+|||+-+. ..+.. .
T Consensus 243 ~~~~~~gl~~~~~~~~~~~v~~~~~~---~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e--~ 317 (374)
T 2xci_A 243 KKARDFGFKTSFFENLEGDVILVDRF---GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVND--L 317 (374)
T ss_dssp HHHHHTTCCEEETTCCCSSEEECCSS---SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHH--H
T ss_pred HHHHHCCCceEEecCCCCcEEEECCH---HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHH--H
Confidence 8899999852 468887753 5778899999996555433 467999999999999996211 11111 0
Q ss_pred hHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q 004753 590 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMS 635 (732)
Q Consensus 590 ~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~ 635 (732)
...+...|. -+.+.|.+++.+...+|..| +.+++|+++.|+...
T Consensus 318 ~~~~~~~G~-l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 318 KEFLEKEGA-GFEVKNETELVTKLTELLSV-KKEIKVEEKSREIKG 361 (374)
T ss_dssp HHHHHHTTC-EEECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHH
T ss_pred HHHHHHCCC-EEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 111112232 13357999999999999999 999999988887654
No 206
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.22 E-value=1.7e-11 Score=108.19 Aligned_cols=90 Identities=12% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 159 DNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 235 (732)
Q Consensus 159 g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~ 235 (732)
|++++|+.+|++++++ +|++..++.++|.++..+|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+.+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444444444 2333334444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHhhCCCChh
Q 004753 236 YEQCLKIDPDSRN 248 (732)
Q Consensus 236 ~~~al~l~p~~~~ 248 (732)
|+++++..|++..
T Consensus 84 ~~~al~~~p~~~~ 96 (117)
T 3k9i_A 84 LLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHhCCCcHH
Confidence 4444444444433
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.21 E-value=3.6e-11 Score=110.43 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 89 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 168 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 168 (732)
+.+.+++|++.++++++++|+++++|+++|.++...++++.+....+ .+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~------------------------~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ------------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH------------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh------------------------HHHHHHHHH
Confidence 34566777777777777777777777777777776665542222110 134555555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCH
Q 004753 169 QMALSIKPNFSQSLNNLGVVYTVQ-----------GKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 169 ~~al~~~p~~~~~~~~la~~~~~~-----------g~~~eA~~~l~~al~~~p~~~ 213 (732)
+++++++|++..+++++|.+|..+ |++++|+++|++|++++|++.
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 555555555555555555555554 477777777777777777764
No 208
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.21 E-value=2.9e-11 Score=106.60 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=86.6
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 123 EMLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 199 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 199 (732)
.+|++++|+.+|++++++ +|++..++.++|.++..+|++++|+.+|+++++.+|+++.++.++|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 004753 200 EMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 200 ~~l~~al~~~p~~~~~~~ 217 (732)
..++++++..|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999999987654
No 209
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.21 E-value=2.6e-11 Score=136.29 Aligned_cols=163 Identities=10% Similarity=0.076 Sum_probs=117.8
Q ss_pred CCCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 467 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
..+.++|++++|+ .|..+.+++++.++++. +.+|+|+|.| .......++...... .++|.|.+... ..+.
T Consensus 324 d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~ 395 (536)
T 3vue_A 324 DRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTG--KKKFEKLLKSMEEKY---PGKVRAVVKFN-APLA 395 (536)
T ss_dssp CTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCB--CHHHHHHHHHHHHHS---TTTEEEECSCC-HHHH
T ss_pred CCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEecc--CchHHHHHHHHHhhc---CCceEEEEecc-HHHH
Confidence 3567899999998 89999999999999875 5678887766 334555555555554 47899988875 5666
Q ss_pred HHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--------------------
Q 004753 545 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------------------- 603 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia-------------------- 603 (732)
...|+.+||||-|+.+ +.|.+.+|||++|+|||+ +++| |++|.|.
T Consensus 396 ~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~-------s~~g-------G~~e~V~dg~~G~~~~~~~~~g~l~~~ 461 (536)
T 3vue_A 396 HLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC-------ASTG-------GLVDTVIEGKTGFHMGRLSVDCKVVEP 461 (536)
T ss_dssp HHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE-------CSCT-------HHHHHCCBTTTEEECCCCCSCTTCCCH
T ss_pred HHHHHhhheeecccccCCCCHHHHHHHHcCCCEEE-------cCCC-------CchheeeCCCCccccccCCCceeEECC
Confidence 7789999999999998 669999999999999998 5555 4444332
Q ss_pred CCHHHHHHHH---HHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 604 KNEDEYVQLA---LQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 604 ~~~~~y~~~a---~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
.|.+++.+.. +.+..++.+ ++ ..+..|.. -|++++.+++++++|+++.
T Consensus 462 ~d~~~la~ai~ral~~~~~~~~-~~---~~~~am~~--~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 462 SDVKKVAATLKRAIKVVGTPAY-EE---MVRNCMNQ--DLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHH-HH---HHHHHHHS--CCSSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhcCcHHH-HH---HHHHHHHh--cCCHHHHHHHHHHHHHHhh
Confidence 2445554443 444456543 22 23333433 3899999999999999873
No 210
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.09 E-value=4.1e-09 Score=121.02 Aligned_cols=214 Identities=10% Similarity=0.062 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----------CCC
Q 004753 2 QPAYYNLGVVYSELMQYDTAL-GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----------PNF 69 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~ 69 (732)
++.|+..+..+...|+.++|. +.|++++...|.+...|...+......|++++|.+.|+++++.. |.+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 568999999999999999997 99999999999999999999999999999999999999999752 322
Q ss_pred HH----HHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCC
Q 004753 70 EI----AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-NWHYADAMYNLGVAYGEMLK-FDMAIVFYELAFHFNPH 143 (732)
Q Consensus 70 ~~----~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~ 143 (732)
.. .......++..........|+.+.|...|.++++. .+....+|...+.+....++ ++.|.++|+++++..|+
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 10 01122334555555566677999999999999988 44556788888877777654 89999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 215 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 215 (732)
+...+..++......|+.+.|..+|++++...|+ ....|......-...|+.+.+.+.++++.+..|++..+
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999999999999999999999999999998873 45688888888889999999999999999999987543
No 211
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.07 E-value=2.5e-09 Score=116.29 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=118.0
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+++.+++.++++..+.....+....+.++..+-..+++.|++. .++.+. ++ +++|.|.++++ +..
T Consensus 240 ~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~----~~~~l~------~~-~~~v~~~~~~~----~~~ 304 (412)
T 3otg_A 240 TARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL----DVSGLG------EV-PANVRLESWVP----QAA 304 (412)
T ss_dssp TTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSC----CCTTCC------CC-CTTEEEESCCC----HHH
T ss_pred CCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCC----Chhhhc------cC-CCcEEEeCCCC----HHH
Confidence 5567788888988766677777777778777544444444432 111111 24 57999999973 456
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcCHHHH
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 623 (732)
++..||+++-. +|++|++|||++|+|||+.+-. ......+..+...|..-++.. |.++..+...+|.+|++.+
T Consensus 305 ~l~~ad~~v~~---~g~~t~~Ea~a~G~P~v~~p~~-~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 380 (412)
T 3otg_A 305 LLPHVDLVVHH---GGSGTTLGALGAGVPQLSFPWA-GDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYR 380 (412)
T ss_dssp HGGGCSEEEES---CCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred HHhcCcEEEEC---CchHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 66779999932 4558999999999999997643 112223556677777666654 8899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 624 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 624 ~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
+++++..++.... ++.++.+..+|+.+.+
T Consensus 381 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 381 AGARAVAAEIAAM---PGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHHS---CCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHhcc
Confidence 9888877665432 4789999999888753
No 212
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.07 E-value=1.1e-09 Score=120.95 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=128.3
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-H----HHHHHHHHHHHHc----CCC-CCcE
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-D----SVRHRFLSTLEQL----GLE-SLRV 532 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~-~----~~~~~~~~~~~~~----Gv~-~~rv 532 (732)
+..++.+++|+ .|..+..++++.++++..|+ .+|+++|.+... . .+++.+.+.+.+. |.. -..|
T Consensus 254 ~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v 333 (482)
T 1uqt_A 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPL 333 (482)
T ss_dssp TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSE
T ss_pred CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceE
Confidence 45678888998 89999999999999999986 678888865321 1 2445555544432 331 1246
Q ss_pred EE-cCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCC-----CeeecCCCcccccchhHHhhhcCCCcccc--
Q 004753 533 DL-LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGV-----PCVTMAGSVHAHNVGVSLLTKVGLKHLIA-- 603 (732)
Q Consensus 533 ~~-~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~Gv-----Pvvt~~g~~~~~r~~~s~l~~~gl~~~ia-- 603 (732)
+| .+.++ .++..++|+.+|||+-|+-+ +.|.+++|||+||+ |||+ ++.+. ....+. ..+++
T Consensus 334 ~~~~g~v~-~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~-------S~~~G-~~~~l~-~g~lv~p 403 (482)
T 1uqt_A 334 YYLNQHFD-RKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFAG-AANELT-SALIVNP 403 (482)
T ss_dssp EEECSCCC-HHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTBG-GGGTCT-TSEEECT
T ss_pred EEeCCCCC-HHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEE-------ECCCC-CHHHhC-CeEEECC
Confidence 65 56665 78999999999999999988 66999999999997 7776 22211 011111 34444
Q ss_pred CCHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 604 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 604 ~~~~~y~~~a~~l~~-d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
.|.+++.+...++.+ +++.++.+.+++++++.. ||...+++.+++.|+++
T Consensus 404 ~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~---~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 454 (482)
T ss_dssp TCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhc
Confidence 589999999999888 467788888888888754 69999999999999763
No 213
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.04 E-value=5.8e-10 Score=120.12 Aligned_cols=169 Identities=12% Similarity=0.050 Sum_probs=123.3
Q ss_pred CCCcEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 468 NGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 468 ~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
++.+++++++++. |..+.+++++.++.++.|+.+|++.+++ .+..++.+++.+ +. .++|.|+|.++ ..+.
T Consensus 204 ~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~--~~~~~~~l~~~~---~~-~~~v~~~g~~~-~~~~ 276 (384)
T 1vgv_A 204 DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL--NPNVREPVNRIL---GH-VKNVILIDPQE-YLPF 276 (384)
T ss_dssp TSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHHH---TT-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCC--CHHHHHHHHHHh---hc-CCCEEEeCCCC-HHHH
Confidence 4556788888764 7778999999999999999998885332 123555555543 22 36899988876 4788
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCC-CcccccchhHHhhhcCCCcccc-CCHHHHHHHHHHhhcCHHH
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG-SVHAHNVGVSLLTKVGLKHLIA-KNEDEYVQLALQLASDVTA 622 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g-~~~~~r~~~s~l~~~gl~~~ia-~~~~~y~~~a~~l~~d~~~ 622 (732)
..+|..||+++-|+ |+ +++|||++|+|||+... . +..-+...| .++++ .|.+++.+...+|..|++.
T Consensus 277 ~~~~~~ad~~v~~S---g~-~~lEA~a~G~PvI~~~~~~------~~~e~v~~g-~g~lv~~d~~~la~~i~~ll~d~~~ 345 (384)
T 1vgv_A 277 VWLMNHAWLILTDS---GG-IQEEAPSLGKPVLVMRDTT------ERPEAVTAG-TVRLVGTDKQRIVEEVTRLLKDENE 345 (384)
T ss_dssp HHHHHHCSEEEESS---ST-GGGTGGGGTCCEEEESSCC------SCHHHHHHT-SEEEECSSHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhCcEEEECC---cc-hHHHHHHcCCCEEEccCCC------CcchhhhCC-ceEEeCCCHHHHHHHHHHHHhChHH
Confidence 89999999999877 44 48999999999998643 1 111123346 55444 5999999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 623 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 623 ~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
++++++..++. ..-|++++++..+++.|.++-
T Consensus 346 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~ 377 (384)
T 1vgv_A 346 YQAMSRAHNPY---GDGQACSRILEALKNNRISLG 377 (384)
T ss_dssp HHHHHSSCCTT---CCSCHHHHHHHHHHHTCCCC-
T ss_pred HhhhhhccCCC---cCCCHHHHHHHHHHHHHHhhc
Confidence 88887765432 245788888888888776554
No 214
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.00 E-value=8.7e-10 Score=118.28 Aligned_cols=167 Identities=14% Similarity=0.110 Sum_probs=119.4
Q ss_pred CCCCcEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 467 TNGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 467 ~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
+++.+++++++++. |..+.++++|.++.++.|+.++++ +.+. ....++.+++.+ +. .++|.|+|.++ ..+
T Consensus 203 ~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~-~~~~~~~~~~~~---~~-~~~v~~~g~~~-~~~ 275 (375)
T 3beo_A 203 GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHM-NPVVRETANDIL---GD-YGRIHLIEPLD-VID 275 (375)
T ss_dssp TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCS-CHHHHHHHHHHH---TT-CTTEEEECCCC-HHH
T ss_pred cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCC-CHHHHHHHHHHh---hc-cCCEEEeCCCC-HHH
Confidence 34566788888874 778999999999998899998666 3331 223344444332 32 36899999877 568
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc-CCHHHHHHHHHHhhcCHHH
Q 004753 544 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-KNEDEYVQLALQLASDVTA 622 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia-~~~~~y~~~a~~l~~d~~~ 622 (732)
....|..+|+++-|+ |.+++|||++|+|||+... ..+ . ..+ ..-| .++++ .|.+++.+...+|..|++.
T Consensus 276 ~~~~~~~ad~~v~~s----g~~~lEA~a~G~Pvi~~~~--~~~-~-~e~-v~~g-~g~~v~~d~~~la~~i~~ll~~~~~ 345 (375)
T 3beo_A 276 FHNVAARSYLMLTDS----GGVQEEAPSLGVPVLVLRD--TTE-R-PEG-IEAG-TLKLAGTDEETIFSLADELLSDKEA 345 (375)
T ss_dssp HHHHHHTCSEEEECC----HHHHHHHHHHTCCEEECSS--CCS-C-HHH-HHTT-SEEECCSCHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhCcEEEECC----CChHHHHHhcCCCEEEecC--CCC-C-cee-ecCC-ceEEcCCCHHHHHHHHHHHHhChHh
Confidence 889999999999776 5559999999999998632 011 1 122 3346 55544 6999999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 623 LANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 623 ~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
++++++..++. ..-|++++++..+++.+
T Consensus 346 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 346 HDKMSKASNPY---GDGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHCCCCCTT---CCSCHHHHHHHHHHHHT
T ss_pred HhhhhhcCCCC---CCCcHHHHHHHHHHHHh
Confidence 88877665433 23578888888887765
No 215
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.99 E-value=1.7e-10 Score=125.64 Aligned_cols=157 Identities=9% Similarity=-0.005 Sum_probs=108.8
Q ss_pred EEecCCC---CcCCHHHHHHHHHHHhHcCC---cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 473 FGSFNNL---AKITPKVLQVWARILCAVPN---SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 473 f~~~~~~---~K~~~~~~~~~~~il~~~p~---~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+..++++ .|..+.+++++..+.+..|+ .+|+++|++... .++|+ .++|.|+|.++ .++...
T Consensus 244 il~~gr~~~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----------~~l~~-~~~v~f~G~~~-~~~l~~ 310 (413)
T 2x0d_A 244 ILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----------IALGK-GIHLNSLGKLT-LEDYAD 310 (413)
T ss_dssp EEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----------EEEET-TEEEEEEESCC-HHHHHH
T ss_pred EEEEecCchhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----------hhcCC-cCcEEEcCCCC-HHHHHH
Confidence 4444553 57888999999999888886 799999976321 34677 47999999987 789999
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc--CCHHHHHHHHHHhhcCHHHH
Q 004753 547 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~ 623 (732)
+|+.+|||+-|+.+ +.|.+.+|||+||+|||+-.|. ... +. .-|-.++++ .|++++++...+|..|++.+
T Consensus 311 ~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~~g-~~e-----~v-~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~ 383 (413)
T 2x0d_A 311 LLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNKYE-NKD-----LS-NWHSNIVSLEQLNPENIAETLVELCMSFNNR 383 (413)
T ss_dssp HHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEECBT-TBC-----GG-GTBTTEEEESSCSHHHHHHHHHHHHHHTC--
T ss_pred HHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeCCC-cch-----hh-hcCCCEEEeCCCCHHHHHHHHHHHHcCHHHH
Confidence 99999999999976 6799999999999999984432 111 11 225556543 68999999999999988766
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004753 624 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 656 (732)
Q Consensus 624 ~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~ 656 (732)
++ ..+++ ...|+++..+.+ .+.|+++
T Consensus 384 ~~---~~~~~---~~~~~W~~~~~~-~~~~~~l 409 (413)
T 2x0d_A 384 DV---DKKES---SNMMFYINEFNE-FSFIKEI 409 (413)
T ss_dssp --------CC---BSCGGGCCCC----TTHHHH
T ss_pred HH---hHHHH---HHhCCHHHHHHH-HHHHHHH
Confidence 65 22221 234666666555 3344444
No 216
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.9e-10 Score=98.25 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 218 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~ 218 (732)
...+..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|++.++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566666666667777777777777777777666777777777777777777777777777777666 666667
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 004753 219 LGVLYRDAGSISLAIDAYE 237 (732)
Q Consensus 219 La~~~~~~g~~~eA~~~~~ 237 (732)
+|.++..+|++++|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7777766666665555444
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.98 E-value=4.5e-09 Score=91.85 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 130 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 130 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
|++.|+++++.+|++..+++++|.++...|++++|+.+|+++++.+|++..++.++|.++...|++++|+..|+++++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444443
No 218
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.95 E-value=6.7e-09 Score=86.00 Aligned_cols=82 Identities=41% Similarity=0.576 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 224 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~ 224 (732)
..+++.+|.++...|++++|+.+|+++++..|++..++.++|.++...|++++|+.+++++++.+|++..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555566666666666666666666666666655555555555555
Q ss_pred Hc
Q 004753 225 DA 226 (732)
Q Consensus 225 ~~ 226 (732)
.+
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 219
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=98.95 E-value=3.5e-08 Score=106.52 Aligned_cols=165 Identities=12% Similarity=0.092 Sum_probs=116.2
Q ss_pred CCCCcEEEecCCC--CcCC-HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 467 TNGFITFGSFNNL--AKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 467 ~~~~~~f~~~~~~--~K~~-~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
++..+++.++++. .|.. ..+++...+. ...|+.++++.+++. .++.+. ++ +++|.|.++++ ..+
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~----~~~~l~------~~-~~~v~~~~~~~-~~~ 282 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPE----HRALLT------DL-PDNARIAESVP-LNL 282 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGG----GGGGCT------TC-CTTEEECCSCC-GGG
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCc----chhhcc------cC-CCCEEEeccCC-HHH
Confidence 4556778888887 3444 7888888888 889999998887652 122221 34 57899999976 333
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC-----CHHHHHHHHHHhhc
Q 004753 544 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-----NEDEYVQLALQLAS 618 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~-----~~~~y~~~a~~l~~ 618 (732)
++..||+++- .+|++|++|||++|+|+|+++-. .....-+..+...|..-++.. |.++..+...+|.+
T Consensus 283 ---ll~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 283 ---FLRTCELVIC---AGGSGTAFTATRLGIPQLVLPQY-FDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp ---TGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCS-TTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHT
T ss_pred ---HHhhCCEEEe---CCCHHHHHHHHHhCCCEEecCCc-ccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHc
Confidence 4477999992 25556999999999999998542 112233456677777666654 78999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 619 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 619 d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
|++.++++++..+... . ....++.+..+|+...
T Consensus 356 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 356 DTGFAAAAIKLSDEIT-A--MPHPAALVRTLENTAA 388 (391)
T ss_dssp CTHHHHHHHHHHHHHH-T--SCCHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHh
Confidence 9999888877655543 2 2367788888776543
No 220
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=6.6e-10 Score=96.01 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 004753 111 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNN 184 (732)
Q Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 184 (732)
..++..+|.++...|++++|++.|+++++++|++..++.++|.++..+|++++|+..++++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777 677777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 004753 185 LGVVYTVQGKMDAAAEMIEK 204 (732)
Q Consensus 185 la~~~~~~g~~~eA~~~l~~ 204 (732)
+|.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777776666555443
No 221
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.94 E-value=7.1e-09 Score=90.60 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 95 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 95 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
+|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++++|.++...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--CHHHHHHHHHHH
Q 004753 175 KPN--FSQSLNNLGVVY 189 (732)
Q Consensus 175 ~p~--~~~~~~~la~~~ 189 (732)
.|. +......+...+
T Consensus 83 ~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 764 334444444333
No 222
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.91 E-value=1.1e-08 Score=84.78 Aligned_cols=84 Identities=42% Similarity=0.625 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004753 110 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 189 (732)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 189 (732)
...+++.+|.++...|++++|+.+++++++.+|++..++.++|.++...|++++|+.+++++++++|++..++.++|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred HHcC
Q 004753 190 TVQG 193 (732)
Q Consensus 190 ~~~g 193 (732)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 223
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.90 E-value=2.3e-09 Score=116.56 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=112.6
Q ss_pred CCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 004753 469 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 548 (732)
Q Consensus 469 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~ 548 (732)
+.++++.++++.+. ..+ +..+.+..|+.+|+|+|+| + +++.|+ .++|.|+|.++ .++....|
T Consensus 221 ~~~~i~~vGrl~~~-Kg~---~~~l~~~~~~~~l~ivG~g----~--------~~~~~l-~~~V~f~G~~~-~~~l~~~~ 282 (406)
T 2hy7_A 221 EGIHAVAVGSMLFD-PEF---FVVASKAFPQVTFHVIGSG----M--------GRHPGY-GDNVIVYGEMK-HAQTIGYI 282 (406)
T ss_dssp SSEEEEEECCTTBC-HHH---HHHHHHHCTTEEEEEESCS----S--------CCCTTC-CTTEEEECCCC-HHHHHHHH
T ss_pred CCcEEEEEeccccc-cCH---HHHHHHhCCCeEEEEEeCc----h--------HHhcCC-CCCEEEcCCCC-HHHHHHHH
Confidence 33678889998542 122 6777788999999999976 2 456677 58999999987 68889999
Q ss_pred ccccEEecCCCC-CCcccHHHhh-------hcCCCeeecCCCcccccchhHHhhhcCCCccc---cCCHHHHHHHHHHhh
Q 004753 549 SLMDISLDTFPY-AGTTTTCESL-------YMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---AKNEDEYVQLALQLA 617 (732)
Q Consensus 549 ~~~Di~Ld~~~~-~g~~t~~eal-------~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~i---a~~~~~y~~~a~~l~ 617 (732)
+.+||++-|+.+ +.+.+++||| ++|+|||+... ..-|..+++ ..|.+++++...++.
T Consensus 283 ~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------------v~~~~~G~l~v~~~d~~~la~ai~~ll 350 (406)
T 2hy7_A 283 KHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------------VVGPYKSRFGYTPGNADSVIAAITQAL 350 (406)
T ss_dssp HTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------------GTCSCSSEEEECTTCHHHHHHHHHHHH
T ss_pred HhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------------cccCcceEEEeCCCCHHHHHHHHHHHH
Confidence 999999999988 5688999999 99999998432 112444544 468999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH--HHH
Q 004753 618 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST--YRN 655 (732)
Q Consensus 618 ~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~--~~~ 655 (732)
.|++ + .....|+++..+++++++ |..
T Consensus 351 ~~~~---------~---~~~~~~sw~~~a~~~~~~~~y~~ 378 (406)
T 2hy7_A 351 EAPR---------V---RYRQCLNWSDTTDRVLDPRAYPE 378 (406)
T ss_dssp HCCC---------C---CCSCCCBHHHHHHHHHCGGGSGG
T ss_pred hCcc---------h---hhhhcCCHHHHHHHHHHhhcccc
Confidence 8876 1 123568999999999988 654
No 224
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.89 E-value=5.5e-09 Score=115.55 Aligned_cols=126 Identities=9% Similarity=-0.043 Sum_probs=101.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HH
Q 004753 117 LGVAYGEMLKFDMAIVFYELAFHF-----NPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---SQ 180 (732)
Q Consensus 117 la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~ 180 (732)
.+..+..+|+|++|+.++++++++ .++ ....+.++|.+|..+|+|++|+.++++++++ .+++ ..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344567789999999999999876 333 3567889999999999999999999999876 3444 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~---~~~~~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
.+++||.+|..+|++++|+.+|++++++ .|++ .+...+++.++..++++++|...|+++.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999876 3454 456678889999999999999999887543
No 225
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.87 E-value=4.6e-08 Score=88.82 Aligned_cols=109 Identities=22% Similarity=0.319 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVEC 167 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 167 (732)
++++|+++|+++.+...... . +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45566666666655543222 2 555555555555566666665554 345555555555555 5555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 004753 168 YQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 168 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~ 208 (732)
|+++.+. .++.+++++|.+|.. .+++++|+++|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555543 445555555555555 55555555555555544
No 226
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=98.85 E-value=2.7e-08 Score=108.72 Aligned_cols=174 Identities=10% Similarity=0.025 Sum_probs=127.1
Q ss_pred CCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCc---EEEEecCCCC-CH----HHHHHHHHHHHHc----CCCCCcEEE
Q 004753 469 GFITFGSFNNL--AKITPKVLQVWARILCAVPNS---RLVVKCKPFC-CD----SVRHRFLSTLEQL----GLESLRVDL 534 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~---~l~l~~~~~~-~~----~~~~~~~~~~~~~----Gv~~~rv~~ 534 (732)
+..++.+++|+ .|..+..++++ ++|++.|+. +|+++|.+.. +. .+++.+.+.+.+. |.. +|+|
T Consensus 280 ~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~--~V~f 356 (496)
T 3t5t_A 280 GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD--TVRI 356 (496)
T ss_dssp TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SEEE
T ss_pred CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc--CEEE
Confidence 45667788888 99999999999 999999974 5777765432 21 2344444444332 553 8999
Q ss_pred cCCcCCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcC---CCeeecCCCcccccch--hHHhhhcCCCcccc--CCH
Q 004753 535 LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMG---VPCVTMAGSVHAHNVG--VSLLTKVGLKHLIA--KNE 606 (732)
Q Consensus 535 ~~~~~~~~~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~G---vPvvt~~g~~~~~r~~--~s~l~~~gl~~~ia--~~~ 606 (732)
++.++ .++..++|+.+|||+-|+-+ +.|.+.+|||+|| .|+|. |..+ +..| |-..+++ .|.
T Consensus 357 ~g~v~-~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVl-------Se~aGa~~~l---~~~allVnP~D~ 425 (496)
T 3t5t_A 357 DNDND-VNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVIL-------SETCGAAEVL---GEYCRSVNPFDL 425 (496)
T ss_dssp EECCC-HHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEE-------ETTBTTHHHH---GGGSEEECTTBH
T ss_pred eCCCC-HHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEE-------eCCCCCHHHh---CCCEEEECCCCH
Confidence 99876 78999999999999999998 6699999999995 55554 2222 1222 2234443 588
Q ss_pred HHHHHHHHHhhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 004753 607 DEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 659 (732)
Q Consensus 607 ~~y~~~a~~l~~d-~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 659 (732)
++..+...++.++ ++.++++.+++++++.+ +|...|+..+.+.+.....+
T Consensus 426 ~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~---~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 426 VEQAEAISAALAAGPRQRAEAAARRRDAARP---WTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT---CBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHhhcccc
Confidence 9999888887775 56777777888888754 68999999999888887644
No 227
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.85 E-value=1.2e-08 Score=112.94 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=109.0
Q ss_pred HHHhhhhHhhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Q 004753 80 LTDLGTKVKLEGDINQGVAYYKKALYY-----NWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPH 143 (732)
Q Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 143 (732)
....+..+..+|++++|+..+++++++ .+++ ..++.++|.+|..+|+|++|+.++++++++ +|+
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 334445567789999999999999986 3444 457899999999999999999999999986 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004753 144 CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 144 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~ 208 (732)
....+++||.+|..+|++++|+.+|++++++ .|+++ ....+++.++..++++++|...|.++.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999986 45554 46788999999999999999999988654
No 228
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=98.83 E-value=5.3e-07 Score=98.01 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=116.3
Q ss_pred CCCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 466 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 466 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l-~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
.++..+++.++++..+...+.+....+.+...| .++++ .|.+.. .+.+. .+ +++|.+.++++ ..
T Consensus 244 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~----~~~l~------~~-~~~v~~~~~~~-~~-- 308 (415)
T 3rsc_A 244 ADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVD----PAALG------DL-PPNVEAHRWVP-HV-- 308 (415)
T ss_dssp SSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSC----GGGGC------CC-CTTEEEESCCC-HH--
T ss_pred CCCCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCC----hHHhc------CC-CCcEEEEecCC-HH--
Confidence 345678899999987777788888888888888 55555 454311 11111 23 57899999986 33
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcCHH
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVT 621 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~ 621 (732)
.++..||+++-. +|..|++||+++|+|+|.++-. .....-+..+...|..-.+.. |.++..+...++..|++
T Consensus 309 -~ll~~ad~~v~~---~G~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 383 (415)
T 3rsc_A 309 -KVLEQATVCVTH---GGMGTLMEALYWGRPLVVVPQS-FDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPA 383 (415)
T ss_dssp -HHHHHEEEEEES---CCHHHHHHHHHTTCCEEECCCS-GGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHH
T ss_pred -HHHhhCCEEEEC---CcHHHHHHHHHhCCCEEEeCCc-chHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHH
Confidence 455559999832 5557999999999999998642 223334567777788765543 78999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 622 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 622 ~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
.++.+++..+.. ... ...++.+..+|+.+.+
T Consensus 384 ~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 384 LLARVEAMRGHV-RRA--GGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHHHHHHHH-HHS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-Hhc--CHHHHHHHHHHHHhhc
Confidence 888876655543 222 3577788888877653
No 229
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=98.83 E-value=2.9e-07 Score=99.44 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=117.5
Q ss_pred CCCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 466 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 466 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
.++..+++.++++..+...+.+....+.+...|--.++..|.+.. ++.+. .+ +++|.+.++++ ..
T Consensus 228 ~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~------~~-~~~v~~~~~~~-~~--- 292 (402)
T 3ia7_A 228 RPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD----PAVLG------PL-PPNVEAHQWIP-FH--- 292 (402)
T ss_dssp STTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC----GGGGC------SC-CTTEEEESCCC-HH---
T ss_pred CCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC----hhhhC------CC-CCcEEEecCCC-HH---
Confidence 355678899999988777788888888888887444444554311 11111 13 57899999976 22
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcCHHH
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 622 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 622 (732)
.++..||+++-. +|+.|++|||++|+|+|.++-........+..+...|..-++.. |.++..+...+|..|++.
T Consensus 293 ~ll~~ad~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~ 369 (402)
T 3ia7_A 293 SVLAHARACLTH---GTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAV 369 (402)
T ss_dssp HHHTTEEEEEEC---CCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHH
T ss_pred HHHhhCCEEEEC---CCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHH
Confidence 666779999832 55578999999999999876411223345567777787655543 789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 623 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 623 ~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
++++++..++. .. ....++.+..+|+.+.+
T Consensus 370 ~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 370 RERVRRMQRDI-LS--SGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHHHHH-HT--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hh--CChHHHHHHHHHHHHhh
Confidence 88877655543 22 24677888888887653
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.83 E-value=1e-07 Score=95.44 Aligned_cols=182 Identities=14% Similarity=0.082 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 55 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE--------------GDINQGVAYYKKALYYNWHYADAMYNLGVA 120 (732)
Q Consensus 55 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 120 (732)
.+..++-.+..+|++.......+..|...+....+. .++..|.+.|.++... .+--+
T Consensus 51 ~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y---------~~raL 121 (301)
T 3u64_A 51 VLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY---------ALSSL 121 (301)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH---------HHHHH
Confidence 456677778889998877777776666655433322 2345666666665532 11112
Q ss_pred HHHcCCHHHHHH-----HHHHHH-hcCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCCC--CHHH
Q 004753 121 YGEMLKFDMAIV-----FYELAF-HFNPHCAEACNNLGVIYKD-----RD------NLDKAVECYQMALSIKPN--FSQS 181 (732)
Q Consensus 121 ~~~~g~~~~A~~-----~~~~al-~~~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~ 181 (732)
......+.+++. -+.+++ +.+|++.+.++..|.+... .| ...+|...++++++++|+ +..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA 201 (301)
T 3u64_A 122 ETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAV 201 (301)
T ss_dssp HHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHH
Confidence 222233332222 223333 4578888888877766543 12 367899999999999999 5669
Q ss_pred HHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 004753 182 LNNLGVVYTVQ-----GKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 182 ~~~la~~~~~~-----g~~~eA~~~l~~al~~~p~~-~~~~~~La~~~~~-~g~~~eA~~~~~~al~l~p~ 245 (732)
|..+|.+|... |+.++|.++|+++++++|+. ...++.+|..+.. +|++++|..++++++..+|.
T Consensus 202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999995 99999999999999999975 9999999999988 59999999999999998876
No 231
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.82 E-value=6.7e-09 Score=87.88 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004753 149 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 227 (732)
Q Consensus 149 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g 227 (732)
+..|..+...|++++|+..|+++++.+|+++. ++.++|.++...|++++|+++|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45566666777777777777777777777776 77777777777777777777777777777776665533 4
Q ss_pred CHHHHHHHHHHHHhhCCCCh
Q 004753 228 SISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 228 ~~~eA~~~~~~al~l~p~~~ 247 (732)
.+.+++..|+++...+|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 55666777776666666543
No 232
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=98.82 E-value=1.8e-08 Score=109.20 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=99.4
Q ss_pred CCCCcEEEecCCCC--cC------CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 004753 467 TNGFITFGSFNNLA--KI------TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 538 (732)
Q Consensus 467 ~~~~~~f~~~~~~~--K~------~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~ 538 (732)
++..+++.++++.. |. ....+....+.+... +.++++.+++ ..++.+. .+ +++|.|.+++
T Consensus 225 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~----~~~~~l~------~~-~~~v~~~~~~ 292 (398)
T 4fzr_A 225 RKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSD----KLAQTLQ------PL-PEGVLAAGQF 292 (398)
T ss_dssp CSSCEEECC----------------CCSHHHHHHHGGGG-TCEEEECCCC------------------C-CTTEEEESCC
T ss_pred CCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-CCEEEEEeCC----cchhhhc------cC-CCcEEEeCcC
Confidence 35567788888773 21 234555555666665 4677776554 1222322 23 5899999997
Q ss_pred CCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHH
Q 004753 539 LLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQ 615 (732)
Q Consensus 539 ~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~ 615 (732)
+ . ..++..||+++- .+|++|++|||++|+|+|+++-.. -...-+..+...|..-++.. |.++..+...+
T Consensus 293 ~-~---~~ll~~ad~~v~---~gG~~t~~Ea~~~G~P~v~~p~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ 364 (398)
T 4fzr_A 293 P-L---SAIMPACDVVVH---HGGHGTTLTCLSEGVPQVSVPVIA-EVWDSARLLHAAGAGVEVPWEQAGVESVLAACAR 364 (398)
T ss_dssp C-H---HHHGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSG-GGHHHHHHHHHTTSEEECC-------CHHHHHHH
T ss_pred C-H---HHHHhhCCEEEe---cCCHHHHHHHHHhCCCEEecCCch-hHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHH
Confidence 5 3 445555999992 356689999999999999986421 12233455667777655543 67888888889
Q ss_pred hhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 004753 616 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 651 (732)
Q Consensus 616 l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~ 651 (732)
+..|++.++++++..++... ....++.+..+|+
T Consensus 365 ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 365 IRDDSSYVGNARRLAAEMAT---LPTPADIVRLIEQ 397 (398)
T ss_dssp HHHCTHHHHHHHHHHHHHTT---SCCHHHHHHHHTC
T ss_pred HHhCHHHHHHHHHHHHHHHc---CCCHHHHHHHHhc
Confidence 99999998888777665432 2467888877764
No 233
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=98.82 E-value=3.9e-08 Score=105.47 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=103.2
Q ss_pred CCCcEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 468 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~-~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
++.+++++++++ .|..+.+++++.++.+..|+.+|++. |++ ...++.+++.+. . .++|.|+|.++ ..+.
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~---~~~~~~l~~~~~---~-~~~v~~~g~~g-~~~~ 268 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLN---PVVREAVFPVLK---G-VRNFVLLDPLE-YGSM 268 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSC---HHHHHHHHHHHT---T-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCC---HHHHHHHHHHhc---c-CCCEEEECCCC-HHHH
Confidence 456677788876 45678899999999888999998885 543 235666666542 2 36899998776 4588
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHH
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 624 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~ 624 (732)
..+|+.+|+++-++ ||. ++|||++|+|||+.... .+.. .+ ...|..-++..|.++..+...++.+|++.++
T Consensus 269 ~~~~~~ad~~v~~S---~g~-~lEA~a~G~PvI~~~~~--~~~~--~~-~~~g~g~lv~~d~~~la~~i~~ll~d~~~~~ 339 (376)
T 1v4v_A 269 AALMRASLLLVTDS---GGL-QEEGAALGVPVVVLRNV--TERP--EG-LKAGILKLAGTDPEGVYRVVKGLLENPEELS 339 (376)
T ss_dssp HHHHHTEEEEEESC---HHH-HHHHHHTTCCEEECSSS--CSCH--HH-HHHTSEEECCSCHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCcEEEECC---cCH-HHHHHHcCCCEEeccCC--Ccch--hh-hcCCceEECCCCHHHHHHHHHHHHhChHhhh
Confidence 89999999998765 444 78999999999975311 0111 11 2334322333799999999999999998887
Q ss_pred HHHH
Q 004753 625 NLRM 628 (732)
Q Consensus 625 ~~r~ 628 (732)
++++
T Consensus 340 ~~~~ 343 (376)
T 1v4v_A 340 RMRK 343 (376)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 7764
No 234
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.81 E-value=6.4e-08 Score=87.90 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 004753 125 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAE 200 (732)
Q Consensus 125 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~ 200 (732)
+++++|+++|+++.+....... +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4689999999999998754444 999999999999999999999886 789999999999999 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 004753 201 MIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKID 243 (732)
Q Consensus 201 ~l~~al~~~p~~~~~~~~La~~~~~----~g~~~eA~~~~~~al~l~ 243 (732)
+|+++.+. .++.+.++||.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999887 689999999999999 999999999999999873
No 235
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.80 E-value=1.2e-08 Score=86.88 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 175 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 245 (732)
Q Consensus 175 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~ 245 (732)
+|+++.+++.+|.++...|++++|+.+|+++++.+|+++.+++.+|.+|..+|++++|+..|++++++.|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 56677777777777777777777777777777777777777777777777777777777777777776554
No 236
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.76 E-value=3.7e-08 Score=83.83 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 141 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 141 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++.++|.+|...|++++|++.|++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 455566666666666666666666666666666666666666666666666666666666666666553
No 237
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.73 E-value=1.7e-08 Score=85.42 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004753 115 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 193 (732)
Q Consensus 115 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 193 (732)
+..|..+...|++++|++.|+++++.+|++.. +++++|.++...|++++|++.|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34566666666677777777777666666666 66667777766777777777777777766666665533 4
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 004753 194 KMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 194 ~~~eA~~~l~~al~~~p~ 211 (732)
.+.+++..|++++..+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 455566666665555443
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=3.7e-06 Score=93.46 Aligned_cols=239 Identities=9% Similarity=-0.067 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhh---CCCCHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAV---SPNFEIAKNNMAI 78 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la~ 78 (732)
...|..+...+-.|+++.+..+|++++...| +...|..........++ .+.....|+.++.. ++.....|.....
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3456666666777999999999999999888 67788777777666653 45677888888875 5666655554433
Q ss_pred HHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHH----------------------------------------------
Q 004753 79 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD---------------------------------------------- 112 (732)
Q Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------------------------------------- 112 (732)
.+.... ..+++.+.+.+.|++++.....+.+
T Consensus 94 f~~~~~---~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 94 EEGKIE---DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HTSSCS---SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhch---hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 221100 1234677777888888774322211
Q ss_pred ---HHHHHHHHHHHcCC---------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004753 113 ---AMYNLGVAYGEMLK---------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 180 (732)
Q Consensus 113 ---~~~~la~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 180 (732)
.|..+.. +..++ .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+..
T Consensus 171 s~~~W~~y~~--~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLID--LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF 247 (493)
T ss_dssp SHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred cHHHHHHHHH--HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence 1111111 11121 234566788888888888888888888888888888888888888887 77654
Q ss_pred HHHHHHH----------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004753 181 SLNNLGV----------------------------------------VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 220 (732)
Q Consensus 181 ~~~~la~----------------------------------------~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La 220 (732)
.+...+. ...+.++.+.|...|+++ ...+.....|...+
T Consensus 248 l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A 326 (493)
T 2uy1_A 248 LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCA 326 (493)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHH
Confidence 4433322 222345566666666666 32222345555555
Q ss_pred HHHHHcC-CHHHHHHHHHHHHhhCCCChhH
Q 004753 221 VLYRDAG-SISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 221 ~~~~~~g-~~~eA~~~~~~al~l~p~~~~a 249 (732)
.+....+ +.+.|...|+++++..|+.+..
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 5555444 4666777777776666665543
No 239
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=98.72 E-value=3.7e-07 Score=98.74 Aligned_cols=160 Identities=9% Similarity=0.017 Sum_probs=104.1
Q ss_pred CCCCcEEEecCCCCcC--CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 467 TNGFITFGSFNNLAKI--TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~--~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
++..+++.++++.... ....+....+.+... +.++++++++.. ++.+. ++ +++|.|.++++ ..+.
T Consensus 230 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~g~~~----~~~l~------~~-~~~v~~~~~~~-~~~l 296 (398)
T 3oti_A 230 PARPEVAITMGTIELQAFGIGAVEPIIAAAGEV-DADFVLALGDLD----ISPLG------TL-PRNVRAVGWTP-LHTL 296 (398)
T ss_dssp CSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS-SSEEEEECTTSC----CGGGC------SC-CTTEEEESSCC-HHHH
T ss_pred CCCCEEEEEcCCCccccCcHHHHHHHHHHHHcC-CCEEEEEECCcC----hhhhc------cC-CCcEEEEccCC-HHHH
Confidence 4567889999988321 344455555566665 577777765522 11111 34 57899999974 4444
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchh--HHhhhcCCCccccC---CHHHHHHHHHHhhcC
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAK---NEDEYVQLALQLASD 619 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d 619 (732)
+..||+++- -+|++|++|||++|+|+|+++-.. -...-+ ..+...|..-++.. +.+... +|.+|
T Consensus 297 ---l~~ad~~v~---~~G~~t~~Eal~~G~P~v~~p~~~-dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~ 365 (398)
T 3oti_A 297 ---LRTCTAVVH---HGGGGTVMTAIDAGIPQLLAPDPR-DQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGD 365 (398)
T ss_dssp ---HTTCSEEEE---CCCHHHHHHHHHHTCCEEECCCTT-CCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHC
T ss_pred ---HhhCCEEEE---CCCHHHHHHHHHhCCCEEEcCCCc-hhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcC
Confidence 455999982 266679999999999999975421 122233 56777777655543 333332 88899
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 620 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 620 ~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
++.++++++..++... . ...++.+..+|+..
T Consensus 366 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 366 ESLRTAAREVREEMVA-L--PTPAETVRRIVERI 396 (398)
T ss_dssp HHHHHHHHHHHHHHHT-S--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-C--CCHHHHHHHHHHHh
Confidence 9999988777665432 2 46888888888764
No 240
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.67 E-value=9.1e-07 Score=92.39 Aligned_cols=151 Identities=15% Similarity=0.057 Sum_probs=79.6
Q ss_pred HHHHhCCCCHHH--HHHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHH-HH
Q 004753 27 KAALERPMYAEA--YCNMGVIYKNRGD---LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA-YY 100 (732)
Q Consensus 27 ~al~~~p~~~~a--~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~-~~ 100 (732)
++....|.+..+ ++..|..++..++ +.+|+.+|+++++++|++..++..++.++..+...-...+...+++. .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 344456665544 4556676666544 58999999999999999998888777776632110000000000110 11
Q ss_pred H--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 101 K--KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 178 (732)
Q Consensus 101 ~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 178 (732)
+ .++..+|..+.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1 111233445555555555554455555555555555555532 4444445555555555555555555555555543
No 241
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.67 E-value=3e-07 Score=98.19 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcc---cccchhHH
Q 004753 516 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSL 592 (732)
Q Consensus 516 ~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~s~ 592 (732)
+.+.+.....++ ++.+.++++ +...+|..+|+++.. +|++|++|++++|+|+|..+-... ....-+..
T Consensus 224 ~~~~~~~~~~~~---~~~v~~f~~---dm~~~l~~aDlvI~r---aG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~ 294 (365)
T 3s2u_A 224 EITAERYRTVAV---EADVAPFIS---DMAAAYAWADLVICR---AGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEF 294 (365)
T ss_dssp HHHHHHHHHTTC---CCEEESCCS---CHHHHHHHCSEEEEC---CCHHHHHHHHHHTCCEEECC-----CCHHHHHHHH
T ss_pred ccccceeccccc---ccccccchh---hhhhhhccceEEEec---CCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHH
Confidence 456666677766 356677765 344566669999932 678899999999999887653211 12234567
Q ss_pred hhhcCCCccccC---CHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004753 593 LTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 655 (732)
Q Consensus 593 l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~ 655 (732)
|...|...+|.. |.++..+...+|..|++.+++|+++.++... ....++.+..+|++-+.
T Consensus 295 l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~---~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 295 LVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAK---PEATRTVVDACLEVARG 357 (365)
T ss_dssp HHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCC---TTHHHHHHHHHHHHC--
T ss_pred HHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHcc
Confidence 888888777753 5788999999999999999999999886421 12345556666555443
No 242
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.67 E-value=4.6e-07 Score=94.61 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 171 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 171 (732)
++.+|+.+|+++++++|+++.++..++.+|... . ...+....... ....+... ..+
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-----------~--~~~~~~~~~~~----------~l~~a~~a-~~a 269 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVR-----------H--SQHPLDEKQLA----------ALNTEIDN-IVT 269 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------H--HHSCCCHHHHH----------HHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------h--ccCCCchhhHH----------HHHHHHHH-HHh
Confidence 346677777777777777777666666665510 0 00111111000 01122221 123
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 004753 172 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 247 (732)
Q Consensus 172 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~ 247 (732)
+...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|++.|++|+.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 4567888888888888888889999999999999999864 67788889999999999999999999999999764
No 243
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.62 E-value=5.4e-07 Score=90.26 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHHH
Q 004753 127 FDMAIVFYELAFHFNPH--CAEACNNLGVIYKDR-----DNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTV-QGKMDA 197 (732)
Q Consensus 127 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~e 197 (732)
..+|...++++++++|+ +..+|..+|.+|... |+.++|.++|+++++++|+. ...++.+|..+.. .|++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 57788888888888888 566888888888884 88888888888888888864 8888888888877 488888
Q ss_pred HHHHHHHHHHhCCC
Q 004753 198 AAEMIEKAIAANPT 211 (732)
Q Consensus 198 A~~~l~~al~~~p~ 211 (732)
|.+++++++...|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888888887665
No 244
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=4.4e-06 Score=92.81 Aligned_cols=204 Identities=9% Similarity=-0.054 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHH
Q 004753 18 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 97 (732)
Q Consensus 18 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~ 97 (732)
.+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.....+...+.. ..+. +.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~-~e~~----------~~- 261 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV-MDEE----------AV- 261 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH-TTCT----------HH-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh-cchh----------HH-
Confidence 345678999999999999999999999999999999999999999999 8876444322211 0001 11
Q ss_pred HHHHHHHHh-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHH
Q 004753 98 AYYKKALYY-------------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDK 163 (732)
Q Consensus 98 ~~~~~al~~-------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~ 163 (732)
++++.+. .+....+|...+..+.+.++.+.|...|+++ +..+.....+...+.+....+ +.+.
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHH
Confidence 1111111 0112345677777777777788888888888 433334566666666555555 5888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 164 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 164 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
|...|+.+++..|+.+..+...+......|+.+.|...|+++ +.....|..........|+.+.+.+.+++++.
T Consensus 339 ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888887777777777777788888888888876 34566777777777777888888777777764
No 245
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=98.55 E-value=1.6e-07 Score=104.74 Aligned_cols=137 Identities=20% Similarity=0.129 Sum_probs=89.5
Q ss_pred HHHHHHHHcCCCC---Cc--EEEcCCcCCcH------HHHHhcccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcc
Q 004753 517 RFLSTLEQLGLES---LR--VDLLPLILLNH------DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH 584 (732)
Q Consensus 517 ~~~~~~~~~Gv~~---~r--v~~~~~~~~~~------~~~~~~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~ 584 (732)
.+...+++.|+.. +| |+|.|.-.... ++...|+.||+|+-|+.| +.|.|.+|||++|+||||..-..+
T Consensus 474 ~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~ 553 (725)
T 3nb0_A 474 LILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGF 553 (725)
T ss_dssp HHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHH
T ss_pred HHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCCh
Confidence 4455566677642 23 67776644333 477888899999999988 669999999999999999432211
Q ss_pred cccchhHHhhhcC-----CCcc-cc----CCHHHHHHHHH----Hhh-cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004753 585 AHNVGVSLLTKVG-----LKHL-IA----KNEDEYVQLAL----QLA-SDVTALANLRMSLRDLMSKSPVCDGQNFALGL 649 (732)
Q Consensus 585 ~~r~~~s~l~~~g-----l~~~-ia----~~~~~y~~~a~----~l~-~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~ 649 (732)
.. .+-...+ -.++ |. .+.++.++... .++ .|+..+..+|++.++.. ..|+++.+++.+
T Consensus 554 ~d----~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A---~~FSWe~iA~~Y 626 (725)
T 3nb0_A 554 GS----YMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS---DLLDWKRMGLEY 626 (725)
T ss_dssp HH----HHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG---GGGBHHHHHHHH
T ss_pred hh----hhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---HhCCHHHHHHHH
Confidence 10 1111111 1233 32 24555444333 333 37878888888766442 369999999999
Q ss_pred HHHHHHHHHHH
Q 004753 650 ESTYRNMWHRY 660 (732)
Q Consensus 650 e~~~~~~~~~~ 660 (732)
+++|+.+..+.
T Consensus 627 l~~Ye~aL~~~ 637 (725)
T 3nb0_A 627 VKARQLALRRG 637 (725)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999998654
No 246
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=98.54 E-value=2.3e-07 Score=101.43 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=112.5
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
+++.++|.++++..+...+.+....+.++..|+.++ |++|.+.. .+.+ . .+ +++|.|.++++ ..
T Consensus 230 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~----~~~l----~--~~-~~~v~~~~~~~-~~--- 294 (430)
T 2iyf_A 230 GAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT----PAEL----G--EL-PDNVEVHDWVP-QL--- 294 (430)
T ss_dssp TCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C----GGGG----C--SC-CTTEEEESSCC-HH---
T ss_pred CCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC----hHHh----c--cC-CCCeEEEecCC-HH---
Confidence 355678999999876667777777777777677776 55665421 1122 1 24 57899999986 22
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcCHHH
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 622 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 622 (732)
..|..+|+++- .+|++|++|||++|+|+|+.+-.. -...-+..+...|..-++.. |.++..+...++..|++.
T Consensus 295 ~~l~~ad~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 370 (430)
T 2iyf_A 295 AILRQADLFVT---HAGAGGSQEGLATATPMIAVPQAV-DQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEV 370 (430)
T ss_dssp HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHH
T ss_pred HHhhccCEEEE---CCCccHHHHHHHhCCCEEECCCcc-chHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHH
Confidence 56778999984 256689999999999999986421 01112445556666444432 789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004753 623 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 657 (732)
Q Consensus 623 ~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~ 657 (732)
++.+++..+..... +..+..+..+|+.+.+..
T Consensus 371 ~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 371 ARRLRRIQAEMAQE---GGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHhc---CcHHHHHHHHHHHhhccc
Confidence 88877766654332 356777777777665443
No 247
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.54 E-value=1.2e-06 Score=82.37 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=93.8
Q ss_pred CCCcEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 468 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 468 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+..++|.++++.. ......+....+.+...| .++++++++... .++ +++|.|.++++ ..+.+.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~~-------------~~~-~~~v~~~~~~~-~~~~l~ 83 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNKP-------------DTL-GLNTRLYKWIP-QNDLLG 83 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSCC-------------TTC-CTTEEEESSCC-HHHHHT
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcCc-------------ccC-CCcEEEecCCC-HHHHhc
Confidence 3457888888874 445667777777777776 455554433211 134 57899999987 455553
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcCHHHH
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 623 (732)
+..||+++. .+|++|++|||++|+|+|..+-.. -...-+..+...|..-++.. +.++..+...++..|++.+
T Consensus 84 -~~~ad~~I~---~~G~~t~~Ea~~~G~P~i~~p~~~-~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~ 158 (170)
T 2o6l_A 84 -HPKTRAFIT---HGGANGIYEAIYHGIPMVGIPLFA-DQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYK 158 (170)
T ss_dssp -STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHH
T ss_pred -CCCcCEEEE---cCCccHHHHHHHcCCCEEeccchh-hHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCHHHH
Confidence 388999994 378899999999999999987421 11233556666676544432 7889998888999998644
Q ss_pred HHH
Q 004753 624 ANL 626 (732)
Q Consensus 624 ~~~ 626 (732)
+.+
T Consensus 159 ~~a 161 (170)
T 2o6l_A 159 ENV 161 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 248
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=98.51 E-value=9.2e-07 Score=95.46 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=101.2
Q ss_pred CCCcEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 468 NGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 468 ~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
++.+++.+.+| ..|..+.+++++.++.++.|+.++++...+ .+..++.+.+. .+. .++|.|.+.++ ..++
T Consensus 229 ~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~--~~~~~~~l~~~---~~~-~~~v~~~~~lg-~~~~ 301 (396)
T 3dzc_A 229 SKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHL--NPNVREPVNKL---LKG-VSNIVLIEPQQ-YLPF 301 (396)
T ss_dssp TSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHH---TTT-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCC--ChHHHHHHHHH---HcC-CCCEEEeCCCC-HHHH
Confidence 44555666644 335557889999999888999988875322 12345555543 243 46899998876 5788
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHH
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 624 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~ 624 (732)
..+|+.||+++-++ | ++++||+++|+|||+.... .+|. . +...|-.-+|..|.++.++...+|..|++.++
T Consensus 302 ~~l~~~ad~vv~~S---G-g~~~EA~a~G~PvV~~~~~--~~~~--e-~v~~G~~~lv~~d~~~l~~ai~~ll~d~~~~~ 372 (396)
T 3dzc_A 302 VYLMDRAHIILTDS---G-GIQEEAPSLGKPVLVMRET--TERP--E-AVAAGTVKLVGTNQQQICDALSLLLTDPQAYQ 372 (396)
T ss_dssp HHHHHHCSEEEESC---S-GGGTTGGGGTCCEEECCSS--CSCH--H-HHHHTSEEECTTCHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhcCEEEECC---c-cHHHHHHHcCCCEEEccCC--Ccch--H-HHHcCceEEcCCCHHHHHHHHHHHHcCHHHHH
Confidence 99999999998665 4 3449999999999986422 1221 1 23346544555689999999999999998777
Q ss_pred HHHHH
Q 004753 625 NLRMS 629 (732)
Q Consensus 625 ~~r~~ 629 (732)
++++.
T Consensus 373 ~m~~~ 377 (396)
T 3dzc_A 373 AMSQA 377 (396)
T ss_dssp HHHTS
T ss_pred HHhhc
Confidence 76653
No 249
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=98.44 E-value=7.8e-07 Score=96.22 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=102.6
Q ss_pred CCCCcEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 467 TNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 467 ~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
+++.+++.+.+|. .|..+.+++++.++.++.|+.++++.+.+ .+..++.+.+. .+. .++|.|++.+. ..+
T Consensus 222 ~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~--~~~~~~~l~~~---~~~-~~~v~l~~~l~-~~~ 294 (403)
T 3ot5_A 222 GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHL--NPAVREKAMAI---LGG-HERIHLIEPLD-AID 294 (403)
T ss_dssp TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHH---HTT-CTTEEEECCCC-HHH
T ss_pred cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCC--CHHHHHHHHHH---hCC-CCCEEEeCCCC-HHH
Confidence 4455667777764 34457889999999999999888876432 12344444433 344 36899999876 578
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHH
Q 004753 544 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 623 (732)
+..+|..||+++-.+ ||.+ +||+++|+|||+.+.. .+|.- + ...|-.-++..|.++.++...++..|++.+
T Consensus 295 ~~~l~~~ad~vv~~S---Gg~~-~EA~a~g~PvV~~~~~--~~~~e--~-v~~g~~~lv~~d~~~l~~ai~~ll~~~~~~ 365 (403)
T 3ot5_A 295 FHNFLRKSYLVFTDS---GGVQ-EEAPGMGVPVLVLRDT--TERPE--G-IEAGTLKLIGTNKENLIKEALDLLDNKESH 365 (403)
T ss_dssp HHHHHHHEEEEEECC---HHHH-HHGGGTTCCEEECCSS--CSCHH--H-HHHTSEEECCSCHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCEEEECC---ccHH-HHHHHhCCCEEEecCC--Ccchh--h-eeCCcEEEcCCCHHHHHHHHHHHHcCHHHH
Confidence 999999999998554 4444 9999999999997421 12221 1 234643344459999999999999999887
Q ss_pred HHHHH
Q 004753 624 ANLRM 628 (732)
Q Consensus 624 ~~~r~ 628 (732)
+++++
T Consensus 366 ~~m~~ 370 (403)
T 3ot5_A 366 DKMAQ 370 (403)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 250
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=2e-06 Score=78.01 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 235 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~~al~~~-p-~~~~~~~~La~~~~~~g~~~eA~~~ 235 (732)
...+.+.|.+.++.++.+.++.+++|.++.+.+ +.++++.++++.++.+ | +..+++++||..|.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456778888888888889999999999999988 6779999999999998 6 5689999999999999999999999
Q ss_pred HHHHHhhCCCChhHHH
Q 004753 236 YEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 236 ~~~al~l~p~~~~a~~ 251 (732)
++++++++|++..+..
T Consensus 94 ~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHhcCCCCHHHHH
Confidence 9999999999987754
No 251
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.37 E-value=1.9e-06 Score=72.01 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004753 175 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 175 ~p~~~~~~~~la~~~~~~g~---~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
+|+++..+..+|.++...++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888888888876655 6888888888888888888888888888888888888888888888888873
No 252
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=98.35 E-value=6.7e-06 Score=88.19 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=103.2
Q ss_pred CCCcEEEecCCCCcC-----CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 004753 468 NGFITFGSFNNLAKI-----TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 542 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~-----~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~ 542 (732)
+..++|.++++.... ..+.+....+.+... +.++++++++ ...+.+. . + +++|.+ ++++ ..
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~g~----~~~~~l~----~--~-~~~v~~-~~~~-~~ 274 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-DVELIVAAPD----TVAEALR----A--E-VPQARV-GWTP-LD 274 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-TCEEEEECCH----HHHHHHH----H--H-CTTSEE-ECCC-HH
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhcC-CcEEEEEeCC----CCHHhhC----C--C-CCceEE-cCCC-HH
Confidence 446788899987543 334455445555554 5666665433 2233332 2 3 578999 9875 44
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcC
Q 004753 543 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASD 619 (732)
Q Consensus 543 ~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d 619 (732)
+ ++..||+|+-. +|++|++|||++|+|+|+.+-..- ...-+..+...|..-++.. |.++..+...++..|
T Consensus 275 ~---~l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~d-q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 275 V---VAPTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKGSV-LEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp H---HGGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred H---HHhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCccc-chHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 4 45779999953 566799999999999999874210 1123344556666544432 788888888899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 620 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 620 ~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
++.++.+++..+.. ...+ ..++.+..+|...
T Consensus 348 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 348 DTYARRAQDLSREI-SGMP--LPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHHHHHH-HTSC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCC--CHHHHHHHHHHHh
Confidence 98888877665543 2322 4666666666554
No 253
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.32 E-value=1.6e-06 Score=94.44 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=43.7
Q ss_pred HcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q 004753 157 DRDNLDKAVECYQMALSI-----KPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLG 220 (732)
Q Consensus 157 ~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~---~~~~~~La 220 (732)
.+|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|++ ...+++||
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 445555555555555543 1222 234555555555555555555555555543 1222 33455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 004753 221 VLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 221 ~~~~~~g~~~eA~~~~~~al~l 242 (732)
.+|..+|++++|+.+|++++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 254
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=5.8e-06 Score=74.91 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 128 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMI 202 (732)
Q Consensus 128 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~~l 202 (732)
..+.+.|.+.++.++.+..+.+++|+++.+.+ +.++++.++++.++.+ | +..++++++|..+.+.|+|++|.+++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34455555555555556666666666666655 4446666666666655 4 34556666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHH
Q 004753 203 EKAIAANPTYAEAYNN 218 (732)
Q Consensus 203 ~~al~~~p~~~~~~~~ 218 (732)
+++++++|++..+...
T Consensus 95 ~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHhcCCCCHHHHHH
Confidence 6666666666555433
No 255
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.30 E-value=1.9e-06 Score=93.69 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHH
Q 004753 159 DNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPT---YAEAYNNLGVL 222 (732)
Q Consensus 159 g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~---~~~~~~~La~~ 222 (732)
|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|+ -...+++||.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5666666666666654 23333 35666666677777777777777766654 222 34456667777
Q ss_pred HHHcCCHHHHHHHHHHHHhh-----CCCChhH
Q 004753 223 YRDAGSISLAIDAYEQCLKI-----DPDSRNA 249 (732)
Q Consensus 223 ~~~~g~~~eA~~~~~~al~l-----~p~~~~a 249 (732)
|..+|++++|+.+|++++++ .|+++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 77777777777777777654 4555443
No 256
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.30 E-value=1e-05 Score=87.25 Aligned_cols=163 Identities=15% Similarity=0.052 Sum_probs=103.6
Q ss_pred CCCCCcEEEecCCCC--cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 004753 466 LTNGFITFGSFNNLA--KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 543 (732)
Q Consensus 466 ~~~~~~~f~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~ 543 (732)
.++..++|.++++.. +...+.+....+.+...+.-.+|..+..... ..+--+++|.+.++++ ..+
T Consensus 234 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~------------~~~~~~~~v~~~~~~p-~~~ 300 (400)
T 4amg_A 234 AAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLA------------LLGELPANVRVVEWIP-LGA 300 (400)
T ss_dssp CTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCC------------CCCCCCTTEEEECCCC-HHH
T ss_pred cCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCcccc------------ccccCCCCEEEEeecC-HHH
Confidence 356678888988873 3334566667777777776666665433111 1122268899999987 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHH
Q 004753 544 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 544 ~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 623 (732)
. +..+|+|+. .+|.+|++|||++|||+|+++-.. -...-+..+...|+.-.+ .+.+.-.+...++..|++.+
T Consensus 301 l---L~~~~~~v~---h~G~~s~~Eal~~GvP~v~~P~~~-dQ~~na~~v~~~G~g~~l-~~~~~~~~al~~lL~d~~~r 372 (400)
T 4amg_A 301 L---LETCDAIIH---HGGSGTLLTALAAGVPQCVIPHGS-YQDTNRDVLTGLGIGFDA-EAGSLGAEQCRRLLDDAGLR 372 (400)
T ss_dssp H---HTTCSEEEE---CCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEEEC-CTTTCSHHHHHHHHHCHHHH
T ss_pred H---hhhhhheec---cCCccHHHHHHHhCCCEEEecCcc-cHHHHHHHHHHCCCEEEc-CCCCchHHHHHHHHcCHHHH
Confidence 4 456999872 477789999999999999987431 122234456666764333 33333345666788899877
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 004753 624 ANLRMSLRDLMSKSPVCDGQNFALGLEST 652 (732)
Q Consensus 624 ~~~r~~lr~~~~~~~~~~~~~~~~~~e~~ 652 (732)
++.++ +++.+...+ .+...++.||+.
T Consensus 373 ~~a~~-l~~~~~~~~--~~~~~a~~le~l 398 (400)
T 4amg_A 373 EAALR-VRQEMSEMP--PPAETAAXLVAL 398 (400)
T ss_dssp HHHHH-HHHHHHTSC--CHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHcCC--CHHHHHHHHHHh
Confidence 77554 444555444 577888888864
No 257
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.27 E-value=2e-06 Score=93.44 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=76.3
Q ss_pred HcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHH
Q 004753 123 EMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---SQSLNNLG 186 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la 186 (732)
..|+|++|+.++++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|++ ...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999999885 3444 567889999999999999999999999876 3444 45788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 004753 187 VVYTVQGKMDAAAEMIEKAIAA-----NPTYAEAY 216 (732)
Q Consensus 187 ~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~~ 216 (732)
.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999988 35655544
No 258
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.26 E-value=4.4e-06 Score=69.78 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004753 142 PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 211 (732)
Q Consensus 142 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 211 (732)
|+++..+..+|.+++..++ .++|..+++++++++|+++.++..+|..++..|+|++|+.+++++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4444444444444443333 344555555555555555555555555555555555555555555544444
No 259
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.24 E-value=9.9e-06 Score=69.22 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 004753 180 QSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 252 (732)
Q Consensus 180 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-------p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 252 (732)
.-.+.+|..++..|+|..|+.+|++|++.. .....++..||.++.++|++++|+.+++++++++|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344556666666666666666666666542 2345666777777777777777777777777777777666555
Q ss_pred H
Q 004753 253 R 253 (732)
Q Consensus 253 ~ 253 (732)
+
T Consensus 86 ~ 86 (104)
T 2v5f_A 86 L 86 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 260
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=98.20 E-value=2.4e-05 Score=85.18 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=108.2
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 545 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~ 545 (732)
++..++|.++++......+.+....+.+.. ++.++ |..|.+... +.+ ..+ +++|.+.++++ +.
T Consensus 253 ~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~----~~~------~~~-~~~v~~~~~~~-~~--- 316 (424)
T 2iya_A 253 DGRPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDP----ADL------GEV-PPNVEVHQWVP-QL--- 316 (424)
T ss_dssp SSCCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCG----GGG------CSC-CTTEEEESSCC-HH---
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCCh----HHh------ccC-CCCeEEecCCC-HH---
Confidence 345688889998876566677666666655 45555 445543211 111 123 57899999986 33
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcCHHH
Q 004753 546 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 622 (732)
Q Consensus 546 ~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 622 (732)
..+..+|+++. .+|.+|++||+++|||+|+.+-.. -...-+..+...|..-.+.. +.++..+...++..|++.
T Consensus 317 ~~l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 392 (424)
T 2iya_A 317 DILTKASAFIT---HAGMGSTMEALSNAVPMVAVPQIA-EQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGV 392 (424)
T ss_dssp HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHHH
T ss_pred HHHhhCCEEEE---CCchhHHHHHHHcCCCEEEecCcc-chHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHH
Confidence 56777999984 366789999999999999987531 11233455666676544432 788999889999999987
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 623 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 623 ~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
++.+++..+.. .. .....+.+..+|+...
T Consensus 393 ~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 393 AERLAAVRQEI-RE--AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHHHH-HT--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-Hh--cCcHHHHHHHHHHHHh
Confidence 77766554443 22 2346667777776643
No 261
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.20 E-value=1.3e-05 Score=68.39 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 145 AEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
+.-++.+|..++..++|..|+.+|++|++.. .....++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445556666666666666666666665542 233556666666666666666666666666666666666655
Q ss_pred HHH
Q 004753 218 NLG 220 (732)
Q Consensus 218 ~La 220 (732)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 262
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.19 E-value=4.9e-06 Score=90.48 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=73.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 004753 43 GVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-----NWHYA---DA 113 (732)
Q Consensus 43 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~ 113 (732)
..-+..+|++++|+..+++++++... ....+...+.++.+++.+|..+|++++|+.++++++++ .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999999999986322 11222345677888888888888999999999988865 34443 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 114 MYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
++++|.+|..+|++++|+.+|++|+++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 778888888888888888888888765
No 263
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.15 E-value=0.00038 Score=77.22 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=131.3
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEML---------KFDMAIVFYELAFHFN-PHCAEACNNLG 152 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~~la 152 (732)
-..+.+.|+.++|++.|++..+.. .-+...|..+-.++...+ ..++|.++|++..+.. .-+...|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 355678899999999999998764 235667777777766544 3788999999887753 23578899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Q 004753 153 VIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSIS 230 (732)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~~~~La~~~~~~g~~~ 230 (732)
..|.+.|++++|.+++++..+.. .-+...|..+...|.+.|+.++|.+.|++..+.. .-+...|..+-..|.+.|+.+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 99999999999999999988753 3367889999999999999999999999998763 235788999999999999999
Q ss_pred HHHHHHHHHHhh
Q 004753 231 LAIDAYEQCLKI 242 (732)
Q Consensus 231 eA~~~~~~al~l 242 (732)
+|.+.+++..+.
T Consensus 193 ~A~~ll~~Mr~~ 204 (501)
T 4g26_A 193 KVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 264
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.11 E-value=2.1e-06 Score=92.12 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=107.2
Q ss_pred CCCCCCcEEEecCCCC-----cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-C-CC-CCcEEEcC
Q 004753 465 ALTNGFITFGSFNNLA-----KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-G-LE-SLRVDLLP 536 (732)
Q Consensus 465 ~~~~~~~~f~~~~~~~-----K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~-G-v~-~~rv~~~~ 536 (732)
+++.+.+++.+.++.. |..+.+++++.++.++. +..+++...+ . +++.+++. | +. .++|.+.+
T Consensus 199 gl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~p----~----~~~~l~~~~~~~~~~~~v~l~~ 269 (385)
T 4hwg_A 199 SLTPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTHP----R----TKKRLEDLEGFKELGDKIRFLP 269 (385)
T ss_dssp TCCTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEECH----H----HHHHHHTSGGGGGTGGGEEECC
T ss_pred CCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECCh----H----HHHHHHHHHHHhcCCCCEEEEc
Confidence 3444566777777653 34467888888887765 6666654322 2 44555555 5 42 36899988
Q ss_pred CcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHh
Q 004753 537 LILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQL 616 (732)
Q Consensus 537 ~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l 616 (732)
... ..++..++..+|+++-.+ || .+.||+++|+|||++...+ +|.- ....|-.-+|..|.++.++...+|
T Consensus 270 ~lg-~~~~~~l~~~adlvvt~S---Gg-v~~EA~alG~Pvv~~~~~t--er~e---~v~~G~~~lv~~d~~~i~~ai~~l 339 (385)
T 4hwg_A 270 AFS-FTDYVKLQMNAFCILSDS---GT-ITEEASILNLPALNIREAH--ERPE---GMDAGTLIMSGFKAERVLQAVKTI 339 (385)
T ss_dssp CCC-HHHHHHHHHHCSEEEECC---TT-HHHHHHHTTCCEEECSSSC--SCTH---HHHHTCCEECCSSHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHhCcEEEECC---cc-HHHHHHHcCCCEEEcCCCc--cchh---hhhcCceEEcCCCHHHHHHHHHHH
Confidence 876 568999999999999433 44 5799999999999986543 1221 123365545556899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 617 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 617 ~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
.+|+..+..+++...... ..-...++.+..++..+
T Consensus 340 l~d~~~~~~m~~~~~~~~--g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 340 TEEHDNNKRTQGLVPDYN--EAGLVSKKILRIVLSYV 374 (385)
T ss_dssp HTTCBTTBCCSCCCHHHH--TCCCHHHHHHHHHHHHH
T ss_pred HhChHHHHHhhccCCCCC--CCChHHHHHHHHHHHHh
Confidence 999866555443322210 11123556666666544
No 265
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.05 E-value=2.4e-05 Score=85.67 Aligned_cols=160 Identities=10% Similarity=0.035 Sum_probs=102.0
Q ss_pred CCCcEEEecCCCC-------cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 004753 468 NGFITFGSFNNLA-------KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 540 (732)
Q Consensus 468 ~~~~~f~~~~~~~-------K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~ 540 (732)
+..++|.++++.. |....+++.+. .. +.++++.+++.. .+.+ .++ +++|.+.++++
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~----~~-~~~~v~~~g~~~----~~~l------~~~-~~~v~~~~~~~- 328 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVG----DV-DAEIIATFDAQQ----LEGV------ANI-PDNVRTVGFVP- 328 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHH----TS-SSEEEECCCTTT----TSSC------SSC-CSSEEECCSCC-
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHH----cC-CCEEEEEECCcc----hhhh------ccC-CCCEEEecCCC-
Confidence 4456777877763 44445555443 33 467766544311 1111 134 57899999986
Q ss_pred cHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhh
Q 004753 541 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLA 617 (732)
Q Consensus 541 ~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~ 617 (732)
.. .++..||+++. .+|.+|++|||++|||+|..+-... ...-+..+...|..-++.. |.++..+...++.
T Consensus 329 ~~---~ll~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll 401 (441)
T 2yjn_A 329 MH---ALLPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGWD-TGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL 401 (441)
T ss_dssp HH---HHGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHH
T ss_pred HH---HHHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCccc-HHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHh
Confidence 33 34677999994 3667899999999999999875211 1223445666676555542 7888888888999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004753 618 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 654 (732)
Q Consensus 618 ~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~ 654 (732)
+|++.++.+++..+... . ....++.+..+|+...
T Consensus 402 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 402 DDPAHRAGAARMRDDML-A--EPSPAEVVGICEELAA 435 (441)
T ss_dssp HCHHHHHHHHHHHHHHH-T--SCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHH
Confidence 99988888776655442 2 2357788888887654
No 266
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.02 E-value=5.3e-05 Score=82.17 Aligned_cols=157 Identities=9% Similarity=-0.007 Sum_probs=99.5
Q ss_pred CcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc
Q 004753 470 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 549 (732)
Q Consensus 470 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~ 549 (732)
.++|.++++.. .....++...+.+...+.-.+|..|.+... ..++ +++|.+.++++ ..+ .+.
T Consensus 239 ~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~~------------~~~~-~~~v~~~~~~~-~~~---~l~ 300 (415)
T 1iir_A 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADLV------------LPDD-GADCFAIGEVN-HQV---LFG 300 (415)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTCC------------CSSC-GGGEEECSSCC-HHH---HGG
T ss_pred CeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCccc------------ccCC-CCCEEEeCcCC-hHH---HHh
Confidence 56788888875 456777777777777765445554543110 0233 47899999987 343 458
Q ss_pred cccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc---CCHHHHHHHHHHhhcCHHHHHHH
Q 004753 550 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALANL 626 (732)
Q Consensus 550 ~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~~~~ 626 (732)
.||+|+. .+|.+|++||+++|||+|.++-.. -...-+..+...|..-.+. -|.++..+...++ .|++.++.+
T Consensus 301 ~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~ 375 (415)
T 1iir_A 301 RVAAVIH---HGGAGTTHVAARAGAPQILLPQMA-DQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARA 375 (415)
T ss_dssp GSSEEEE---CCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHH
T ss_pred hCCEEEe---CCChhHHHHHHHcCCCEEECCCCC-ccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHH
Confidence 8999994 366679999999999999987421 1122344556667655453 2788888888888 998777776
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHH
Q 004753 627 RMSLRDLMSKSPVCDGQNFALGLEST 652 (732)
Q Consensus 627 r~~lr~~~~~~~~~~~~~~~~~~e~~ 652 (732)
++..+.. . ..-..+..+..+|..
T Consensus 376 ~~~~~~~-~--~~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 376 TAVAGTI-R--TDGAAVAARLLLDAV 398 (415)
T ss_dssp HHHHHHS-C--SCHHHHHHHHHHHHH
T ss_pred HHHHHHH-h--hcChHHHHHHHHHHH
Confidence 6554432 1 222344555555554
No 267
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.99 E-value=0.0013 Score=72.91 Aligned_cols=184 Identities=10% Similarity=0.037 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhhhh--HhhcCCHHHHHHHHHHHHHhC-CCCHH
Q 004753 38 AYCNMGVIYKNRGDLESAIACYERCLAVS--PNFEIAKNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYN-WHYAD 112 (732)
Q Consensus 38 a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~-p~~~~ 112 (732)
.+..+-..+.+.|+.++|+++|++..+.. |+ ...+..+..++...+.. ....+..++|.+.|++..+.. .-+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35556678889999999999999998753 43 22333332222221110 112345789999999987764 23678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYT 190 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 190 (732)
+|..+...|.+.|++++|.+++++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+.. .-+...|..+...|.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999988753 2357889999999999999999999999988763 335778999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 004753 191 VQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLY 223 (732)
Q Consensus 191 ~~g~~~eA~~~l~~al~~--~p~~~~~~~~La~~~ 223 (732)
+.|+.++|.+++++.-+. .|+ ..++..+-..+
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 999999999999998765 343 34444443333
No 268
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.94 E-value=2.7e-05 Score=81.68 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=92.9
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
.+..+++-.+++.|. ..+..+ .|+.+|+|+|+|... .. . +|.|+|+++ .++....
T Consensus 176 ~~~~~i~yaG~l~k~--~~L~~l------~~~~~f~ivG~G~~~--------------~l-~-nV~f~G~~~-~~el~~~ 230 (339)
T 3rhz_A 176 GLKREIHFPGNPERF--SFVKEW------KYDIPLKVYTWQNVE--------------LP-Q-NVHKINYRP-DEQLLME 230 (339)
T ss_dssp EEEEEEEECSCTTTC--GGGGGC------CCSSCEEEEESCCCC--------------CC-T-TEEEEECCC-HHHHHHH
T ss_pred CCCcEEEEeCCcchh--hHHHhC------CCCCeEEEEeCCccc--------------Cc-C-CEEEeCCCC-HHHHHHH
Confidence 344678888999872 222222 389999999988321 23 3 899999998 7888888
Q ss_pred cccccEEecCCC--------CCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcC
Q 004753 548 YSLMDISLDTFP--------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD 619 (732)
Q Consensus 548 ~~~~Di~Ld~~~--------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d 619 (732)
++.+|+.|-..+ ++....+.|+|++|+|||+...... +.+...-|+ ++++++.++.++....+ +
T Consensus 231 l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~-----~~~v~~~~~-G~~~~~~~e~~~~i~~l--~ 302 (339)
T 3rhz_A 231 MSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIAN-----QELIENNGL-GWIVKDVEEAIMKVKNV--N 302 (339)
T ss_dssp HHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTT-----THHHHHHTC-EEEESSHHHHHHHHHHC--C
T ss_pred HHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhH-----HHHHHhCCe-EEEeCCHHHHHHHHHHh--C
Confidence 877777775411 2335578999999999998554422 233444343 56778889988887776 4
Q ss_pred HHHHHHHHHHHHHH
Q 004753 620 VTALANLRMSLRDL 633 (732)
Q Consensus 620 ~~~~~~~r~~lr~~ 633 (732)
++.+++|++..++.
T Consensus 303 ~~~~~~m~~na~~~ 316 (339)
T 3rhz_A 303 EDEYIELVKNVRSF 316 (339)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66788888888765
No 269
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.80 E-value=0.00014 Score=78.84 Aligned_cols=137 Identities=7% Similarity=-0.064 Sum_probs=88.9
Q ss_pred CcEEEecCCCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 004753 470 FITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 548 (732)
Q Consensus 470 ~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~ 548 (732)
.++|.++++... ...+.++...+.+...+--.+|..|.+.. + . ..+ +++|.+.++++ ..+ ++
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~-~-----~------~~~-~~~v~~~~~~~-~~~---ll 300 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-V-----L------PDD-RDDCFAIDEVN-FQA---LF 300 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC-C-----C------SCC-CTTEEEESSCC-HHH---HG
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc-c-----c------cCC-CCCEEEeccCC-hHH---Hh
Confidence 567888888743 33455666666666665434444454311 0 0 133 57899999986 444 45
Q ss_pred ccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCcccc---CCHHHHHHHHHHhhcCHHHHHH
Q 004753 549 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALAN 625 (732)
Q Consensus 549 ~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~~~ 625 (732)
..||+++. .+|.+|++||+++|||+|+++-.. -...-+..+...|..-.+. -+.++..+...++ .|++.++.
T Consensus 301 ~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~ 375 (416)
T 1rrv_A 301 RRVAAVIH---HGSAGTEHVATRAGVPQLVIPRNT-DQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRAR 375 (416)
T ss_dssp GGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSB-THHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHH
T ss_pred ccCCEEEe---cCChhHHHHHHHcCCCEEEccCCC-CcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHH
Confidence 77999994 466779999999999999987421 1122344556667655553 3788888888888 99866655
Q ss_pred HHH
Q 004753 626 LRM 628 (732)
Q Consensus 626 ~r~ 628 (732)
+++
T Consensus 376 ~~~ 378 (416)
T 1rrv_A 376 AEA 378 (416)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 270
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.77 E-value=0.00039 Score=76.86 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=97.1
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CH-HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CD-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 544 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--~~-~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~ 544 (732)
+..++|.||++.....+..+...++.|...+--.+|..+.... .. .+.+.+.+. + ++++.+.+++| +.+.
T Consensus 294 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-----~-~~~~~v~~~~p-q~~~ 366 (482)
T 2pq6_A 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNE-----I-ADRGLIASWCP-QDKV 366 (482)
T ss_dssp TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHH-----H-TTTEEEESCCC-HHHH
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHHh-----c-CCCEEEEeecC-HHHH
Confidence 4568999999987677777777788888877666777654310 00 012233222 2 47888999987 3332
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhh-hcCCCcccc--CCHHHHHHHHHHhhcCHH
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA--KNEDEYVQLALQLASDVT 621 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~-~~gl~~~ia--~~~~~y~~~a~~l~~d~~ 621 (732)
+ ....+|+|+. .+|.+|++||+++|||+|+++-.. -...-+..+. ..|..-.+. -+.++..+...++..|++
T Consensus 367 L-~h~~~~~~vt---h~G~~s~~Eal~~GvP~i~~P~~~-dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~ 441 (482)
T 2pq6_A 367 L-NHPSIGGFLT---HCGWNSTTESICAGVPMLCWPFFA-DQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDK 441 (482)
T ss_dssp H-TSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHH
T ss_pred h-cCCCCCEEEe---cCCcchHHHHHHcCCCEEecCccc-chHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcCCc
Confidence 2 2234566872 478889999999999999987531 1223344453 567755443 377888888888888885
Q ss_pred HHHHHHHHHHH
Q 004753 622 ALANLRMSLRD 632 (732)
Q Consensus 622 ~~~~~r~~lr~ 632 (732)
.+.+|++.++
T Consensus 442 -~~~~r~~a~~ 451 (482)
T 2pq6_A 442 -GKKMKQKAME 451 (482)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 3445555443
No 271
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=97.77 E-value=0.00023 Score=76.76 Aligned_cols=158 Identities=8% Similarity=-0.036 Sum_probs=98.8
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 547 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~ 547 (732)
+..+++.++++... ..+.++...+.+...+--.+|..|.+. .+ ..+. +++|.+.++++ ..+ +
T Consensus 220 ~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~~-~~-----------~~~~-~~~v~~~~~~~-~~~---l 281 (404)
T 3h4t_A 220 GSPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWAG-LG-----------RIDE-GDDCLVVGEVN-HQV---L 281 (404)
T ss_dssp SSCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTTT-CC-----------CSSC-CTTEEEESSCC-HHH---H
T ss_pred CCCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-----------cccC-CCCEEEecCCC-HHH---H
Confidence 44678888888866 566777777777777544444433221 00 1133 57899999976 344 4
Q ss_pred cccccEEecCCCC-CCcccHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHhhcCHHHH
Q 004753 548 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 623 (732)
Q Consensus 548 ~~~~Di~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 623 (732)
+..+|+++ . +|..|+.||+++|||+|.++-.. -...-+..+...|..-.+.. +.++..+...++.+ ++.+
T Consensus 282 l~~~d~~v----~~gG~~t~~Eal~~GvP~v~~p~~~-dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~ 355 (404)
T 3h4t_A 282 FGRVAAVV----HHGGAGTTTAVTRAGAPQVVVPQKA-DQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIR 355 (404)
T ss_dssp GGGSSEEE----ECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHH
T ss_pred HhhCcEEE----ECCcHHHHHHHHHcCCCEEEcCCcc-cHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHH
Confidence 45699998 5 55579999999999999986321 12233455666777655532 78888888888888 7665
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004753 624 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 653 (732)
Q Consensus 624 ~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~ 653 (732)
+++++..+. +. . -..++.+..+|..+
T Consensus 356 ~~~~~~~~~-~~--~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 356 ARAAAVAGT-IR--T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHTT-CC--C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-Hh--h-hHHHHHHHHHHHHH
Confidence 554443321 11 1 23445555555544
No 272
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.76 E-value=0.00019 Score=78.76 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=97.4
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
++..++|.||++.....++.+...++.|...+--.+|..|.... +.+.+.+.++ + ++++.+.++.| +.+.+
T Consensus 269 ~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~p-q~~vL- 339 (456)
T 2c1x_A 269 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR-VHLPEGFLEK-----T-RGYGMVVPWAP-QAEVL- 339 (456)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG-GGSCTTHHHH-----H-TTTEEEESCCC-HHHHH-
T ss_pred CCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcch-hhCCHHHHhh-----c-CCceEEecCCC-HHHHh-
Confidence 35678999999987777777777777777766666777664310 0111222221 1 46888889987 33322
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhhc-CCCcccc---CCHHHHHHHHHHhhcCHHH
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLIA---KNEDEYVQLALQLASDVTA 622 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~-gl~~~ia---~~~~~y~~~a~~l~~d~~~ 622 (732)
....+|+|+. .+|.+|++||+++|||+|+++-. .-...-+..+... |..-.+. -+.++..+...++..|++
T Consensus 340 ~h~~~~~fvt---h~G~~S~~Eal~~GvP~i~~P~~-~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~- 414 (456)
T 2c1x_A 340 AHEAVGAFVT---HCGWNSLWESVAGGVPLICRPFF-GDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK- 414 (456)
T ss_dssp TSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH-
T ss_pred cCCcCCEEEe---cCCcchHHHHHHhCceEEecCCh-hhHHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc-
Confidence 2226899982 48888999999999999998853 1122344556555 7655443 267787777778888874
Q ss_pred HHHHHHHHHH
Q 004753 623 LANLRMSLRD 632 (732)
Q Consensus 623 ~~~~r~~lr~ 632 (732)
...+|++.++
T Consensus 415 ~~~~r~~a~~ 424 (456)
T 2c1x_A 415 GKKLRENLRA 424 (456)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445554443
No 273
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.75 E-value=0.00033 Score=76.35 Aligned_cols=139 Identities=11% Similarity=0.067 Sum_probs=92.6
Q ss_pred CCCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 467 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 467 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
+++.++|.||++....+++.+...+..|...+--.||..+.. . .+.+-+.+.+. + ++|+.+.++.| +.+.+
T Consensus 271 ~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~----~-~~~lp~~~~~~-~-~~~~~vv~w~P-q~~vL- 341 (454)
T 3hbf_A 271 ENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----P-KEKLPKGFLER-T-KTKGKIVAWAP-QVEIL- 341 (454)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC----H-HHHSCTTHHHH-T-TTTEEEESSCC-HHHHH-
T ss_pred CCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc----c-hhcCCHhHHhh-c-CCceEEEeeCC-HHHHH-
Confidence 456889999999988888888888888888877788887653 1 11221112111 2 47888889987 44433
Q ss_pred hccccc--EEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHhhh-cCCCcccc---CCHHHHHHHHHHhhcCH
Q 004753 547 AYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA---KNEDEYVQLALQLASDV 620 (732)
Q Consensus 547 ~~~~~D--i~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~-~gl~~~ia---~~~~~y~~~a~~l~~d~ 620 (732)
..+| +|+ ..+|.+|++||+++|||+|+++-.. -...-+..+.. +|..-.+. -+.++..+...++..|+
T Consensus 342 --~h~~v~~fv---tH~G~~S~~Eal~~GvP~i~~P~~~-DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 342 --KHSSVGVFL---THSGWNSVLECIVGGVPMISRPFFG-DQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp --HSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred --hhcCcCeEE---ecCCcchHHHHHHcCCCEecCcccc-cHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence 4456 776 2477889999999999999988421 12233444544 46654342 36777777777777774
No 274
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.73 E-value=0.00022 Score=62.20 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 160 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAID 234 (732)
Q Consensus 160 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e---A~~~l~~al~~~-p-~~~~~~~~La~~~~~~g~~~eA~~ 234 (732)
....+.+.|.+.+..++...++.+++|.++.+..+... ++.+++..+... | ..-+.++.||..+.++|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455666666666666777777777777777666555 777777777665 3 345678888888888888888888
Q ss_pred HHHHHHhhCCCChhHHH
Q 004753 235 AYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 235 ~~~~al~l~p~~~~a~~ 251 (732)
+++.+|++.|++..+..
T Consensus 96 ~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHH
Confidence 88888888888877654
No 275
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.60 E-value=0.00065 Score=59.19 Aligned_cols=89 Identities=13% Similarity=0.017 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 92 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM---AIVFYELAFHFN-P-HCAEACNNLGVIYKDRDNLDKAVE 166 (732)
Q Consensus 92 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 166 (732)
....+.+.|.+.+..++...++.+++|.++....+... ++.+++..++.+ | ..-+.++.+|..+++.|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444444444444444445555555555554444333 444444444433 2 223344444444444444444444
Q ss_pred HHHHHHhhCCCCHH
Q 004753 167 CYQMALSIKPNFSQ 180 (732)
Q Consensus 167 ~~~~al~~~p~~~~ 180 (732)
+++..++..|++..
T Consensus 96 ~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCCCHH
Confidence 44444444444443
No 276
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.52 E-value=0.0012 Score=72.33 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=91.1
Q ss_pred CCCcEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 004753 468 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 546 (732)
Q Consensus 468 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~ 546 (732)
++.++|.||++.. .++.+.+...++.|...+--.+|..+.+ .+.+.+.+.+.... ++++.+.++.| +.+.+
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~--~~~l~~~~~~~~~~----~~~~~v~~w~p-q~~vL- 346 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE--KKVFPEGFLEWMEL----EGKGMICGWAP-QVEVL- 346 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC--GGGSCTTHHHHHHH----HCSEEEESSCC-HHHHH-
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC--cccCChhHHHhhcc----CCCEEEEccCC-HHHHh-
Confidence 5578999999988 7888878888888877776667776642 00111122222110 25778888887 33322
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHH-hhhcCCCcccc---------CCHHHHHHHHHHh
Q 004753 547 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLIA---------KNEDEYVQLALQL 616 (732)
Q Consensus 547 ~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~-l~~~gl~~~ia---------~~~~~y~~~a~~l 616 (732)
.+..+|+|+. .+|.+|++||+++|||+|+++-..- ...-+.. ....|..-.+. -+.++..+...++
T Consensus 347 ~h~~~~~fvt---h~G~~s~~Eal~~GvP~i~~P~~~d-Q~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~l 422 (463)
T 2acv_A 347 AHKAIGGFVS---HCGWNSILESMWFGVPILTWPIYAE-QQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL 422 (463)
T ss_dssp HSTTEEEEEE---CCCHHHHHHHHHTTCCEEECCCSTT-HHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHH
T ss_pred CCCccCeEEe---cCCchhHHHHHHcCCCeeeccchhh-hHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHH
Confidence 2346899982 4888899999999999999985211 2223444 36667765551 2566766666667
Q ss_pred hc-CHHHHHH
Q 004753 617 AS-DVTALAN 625 (732)
Q Consensus 617 ~~-d~~~~~~ 625 (732)
.. +++.+++
T Consensus 423 l~~~~~~r~~ 432 (463)
T 2acv_A 423 MDKDSIVHKK 432 (463)
T ss_dssp TCTTCTHHHH
T ss_pred HhccHHHHHH
Confidence 65 3433333
No 277
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.41 E-value=0.0023 Score=56.95 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=76.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004753 141 NPHCAEACNNLGVIYKDRDNL------DKAVECYQMALSIKPNF--------SQSLNNLGVVYTVQGKMDAAAEMIEKAI 206 (732)
Q Consensus 141 ~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~eA~~~l~~al 206 (732)
.|++++.|........+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 455555555555555555555 55556666666554432 3355555644 45588888899999888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH
Q 004753 207 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 249 (732)
Q Consensus 207 ~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a 249 (732)
.++...+.+|...|+...++|+...|.+.+.+++.+.|.....
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 8888888888888998899999999999999999888876544
No 278
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.39 E-value=0.0016 Score=57.99 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=93.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 106 YNWHYADAMYNLGVAYGEMLKF------DMAIVFYELAFHFNPHC--------AEACNNLGVIYKDRDNLDKAVECYQMA 171 (732)
Q Consensus 106 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 171 (732)
..|++.+.|..........|+. ++-++.|++|+..-|.. ...|...+.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5789999999999999988998 88899999999876542 4456666654 5668999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004753 172 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 216 (732)
Q Consensus 172 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 216 (732)
+++....+.+|...|..-.++|+..+|.+.+.+++...|...+.+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 999888899999999999999999999999999999998866544
No 279
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.32 E-value=0.00097 Score=73.55 Aligned_cols=137 Identities=18% Similarity=0.107 Sum_probs=86.5
Q ss_pred CCCcEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC------------C---HHHHHHHHHHHHHcCCCCCc-
Q 004753 468 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC------------C---DSVRHRFLSTLEQLGLESLR- 531 (732)
Q Consensus 468 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~------------~---~~~~~~~~~~~~~~Gv~~~r- 531 (732)
++.++|.||++.....++.+...++.|...+--.||.++.+.. . +.+-+++.++ + .+|
T Consensus 267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~-~~~g 340 (480)
T 2vch_A 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLER-----T-KKRG 340 (480)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHH-----T-TTTE
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHH-----h-CCCe
Confidence 4578999999998788888888888888888777787764321 0 1122233222 1 233
Q ss_pred EEEcCCcCCcHHHHHhccccc--EEecCCCCCCcccHHHhhhcCCCeeecCCCcccccchhHHh-hhcCCCcccc-----
Q 004753 532 VDLLPLILLNHDHMQAYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA----- 603 (732)
Q Consensus 532 v~~~~~~~~~~~~~~~~~~~D--i~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~s~l-~~~gl~~~ia----- 603 (732)
+++.++.| +. ..+..+| +|+ ..+|.+|++||+++|||+|+++-- .-...-+..+ ..+|+.-.+.
T Consensus 341 ~~v~~w~P-q~---~vL~h~~v~~fv---tHgG~~S~~Eal~~GvP~i~~P~~-~DQ~~na~~l~~~~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAP-QA---QVLAHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLY-AEQKMNAVLLSEDIRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCC-HH---HHHHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTTCCEECCCCCTTS
T ss_pred EEEeCccC-HH---HHhCCCCcCeEE---ecccchhHHHHHHcCCCEEecccc-ccchHHHHHHHHHhCeEEEeecccCC
Confidence 34445876 43 4444456 566 247888999999999999998852 1122333443 4666654342
Q ss_pred -CCHHHHHHHHHHhhc
Q 004753 604 -KNEDEYVQLALQLAS 618 (732)
Q Consensus 604 -~~~~~y~~~a~~l~~ 618 (732)
-+.++..+...++..
T Consensus 413 ~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 413 LVRREEVARVVKGLME 428 (480)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhc
Confidence 256777666667766
No 280
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.18 E-value=0.003 Score=57.52 Aligned_cols=132 Identities=17% Similarity=0.089 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQ 180 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~ 180 (732)
+++.-...+...+.|+.|+-....++.+. ++. ..++..+|.+++..++|..|...|+++++... ....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45666677788889999988888877653 321 34778888889999999999999998876532 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHhh
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 259 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~~la~~~ 259 (732)
....++. ... ...... .+.+.++.+.++.||.+++++++|+..++.. -+..+....|++++..|
T Consensus 102 ~~~~~~~----~ss-------~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SAS-------TPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI---PSRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---CGGGCCHHHHHHHHHHC
T ss_pred ccccccc----cCC-------Cccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---CchhcCHHHHHHHHHHh
Confidence 1101110 000 000111 2345688899999999999999999987754 22233445566666554
No 281
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.17 E-value=0.0021 Score=58.46 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=87.8
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PHCA 145 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~ 145 (732)
.+++.........+.|+.|+-....++....++ ..++..+|..++..++|..|...|+++++.. +.+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666677788999999999999877664322 2478999999999999999999999998762 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 224 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~ 224 (732)
.....++. ...+. .... .+.+.+..+.++.||.+.+++++|+..++..-.. ...+.+...||.+|.
T Consensus 101 s~~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 101 KVRPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHCC
T ss_pred Cccccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHhc
Confidence 11111110 00000 0111 2345678888999999999999999988764222 245777778887763
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.94 E-value=0.017 Score=51.10 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 176 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 176 p~~~~~~~~la~~~~~~g~~---~eA~~~l~~al~~~p~-~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
.-..++.+++|+++.+..+. .+++.+++..+...|. .-+.++.||..+.++|+|++|..+.+..|++.|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678889999999887654 4789999999988884 5688999999999999999999999999999999987754
No 283
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.72 E-value=0.015 Score=50.78 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 004753 177 NFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 251 (732)
Q Consensus 177 ~~~~~~~~la~~~~~~g~~---~eA~~~l~~al~~~p~-~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 251 (732)
-.+.+.+++|.++.+..+. .+++..++..++..|. .-+.++.||..+.++|+|++|..+.+.++++.|++..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3467888888888887654 4788888888888874 4678899999999999999999999999999999887754
No 284
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.50 E-value=0.066 Score=47.30 Aligned_cols=76 Identities=8% Similarity=-0.022 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004753 143 HCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 218 (732)
Q Consensus 143 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 218 (732)
-+....+++|+++....+. .+++.+++..+...|. .-++++.+|..+.++|+|++|.++.+..++..|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3455566666666555433 3456666666655553 34466666666666666666666666666666666554433
No 285
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.40 E-value=0.019 Score=60.09 Aligned_cols=99 Identities=11% Similarity=-0.028 Sum_probs=59.2
Q ss_pred CCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC---CCc-EEEcCCcCCcHHHHHhcccccE
Q 004753 479 LAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE---SLR-VDLLPLILLNHDHMQAYSLMDI 553 (732)
Q Consensus 479 ~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~---~~r-v~~~~~~~~~~~~~~~~~~~Di 553 (732)
..|.-| +.+.-.++.|... +.++++.|.+ ..++... .+.+ .+. ..+ +.+.|... -.+..++++.||+
T Consensus 193 ~~k~wp~~~~~~l~~~L~~~-~~~vvl~g~~----~e~~~~~-~i~~-~~~~~~~~~~~~l~g~~s-l~e~~ali~~a~l 264 (348)
T 1psw_A 193 PAKRWPHYHYAELAKQLIDE-GYQVVLFGSA----KDHEAGN-EILA-ALNTEQQAWCRNLAGETQ-LDQAVILIAACKA 264 (348)
T ss_dssp GGGSCCHHHHHHHHHHHHHT-TCEEEECCCG----GGHHHHH-HHHT-TSCHHHHTTEEECTTTSC-HHHHHHHHHTSSE
T ss_pred ccCCCCHHHHHHHHHHHHHC-CCeEEEEeCh----hhHHHHH-HHHH-hhhhccccceEeccCcCC-HHHHHHHHHhCCE
Confidence 345554 2333333333333 7788887755 2222222 2222 121 123 45677655 6789999999999
Q ss_pred EecCCCCCCcccHHHhhhcCCCeeecCCCcccccch
Q 004753 554 SLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 554 ~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
++-.- .|+..+ |.++|+|+|++-|.+...|.+
T Consensus 265 ~I~~D---sg~~Hl-Aaa~g~P~v~lfg~t~~~~~~ 296 (348)
T 1psw_A 265 IVTND---SGLMHV-AAALNRPLVALYGPSSPDFTP 296 (348)
T ss_dssp EEEES---SHHHHH-HHHTTCCEEEEESSSCTTSSC
T ss_pred EEecC---CHHHHH-HHHcCCCEEEEECCCCccccC
Confidence 98422 344444 889999999999988776665
No 286
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.28 E-value=0.037 Score=48.28 Aligned_cols=73 Identities=8% Similarity=-0.004 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004753 145 AEACNNLGVIYKDRDNL---DKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 217 (732)
Q Consensus 145 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 217 (732)
..+.+++|+++.+..+. .+++.+++..++..|. .-++++.+|..+.+.|+|++|.++.+..++..|++..+..
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 44555555555544432 3455555555555542 2445555555555566666666666655555555554443
No 287
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.22 E-value=0.35 Score=51.03 Aligned_cols=171 Identities=13% Similarity=0.045 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh-hcCCHHHHHHHHHHHHHhCCCCH----
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LEGDINQGVAYYKKALYYNWHYA---- 111 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~---- 111 (732)
.+.+.+|..|...|++++-.+++.......+..+.+.. +.+...+-..+. ..+..+.-++.+..+++...+..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~--~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKA--AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHH--HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998888888877655444332221 222222211111 13455555666666665432221
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH-
Q 004753 112 D--AMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNFS- 179 (732)
Q Consensus 112 ~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~- 179 (732)
. .-..+|.+|+..|+|.+|.+.+.+..+.-.. ..+++.....+|...+++.++...+.++.... +.++
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1 2347899999999999999998888764211 14566777788899999999999998887653 1223
Q ss_pred ---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 004753 180 ---QSLNNLGVVYT-VQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 180 ---~~~~~la~~~~-~~g~~~eA~~~l~~al~~~ 209 (732)
.....-|..+. ..++|.+|..+|-++++..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 24455677788 7999999999998887543
No 288
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.09 E-value=0.35 Score=56.32 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=61.8
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhh
Q 004753 11 VYSELMQYDTALG-CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 89 (732)
Q Consensus 11 ~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~ 89 (732)
.....+++++|.+ ++.. -++ ......+...+...|.+++|+...+ ++..... ....
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~----------~~l~ 664 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQKFE----------LALK 664 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHH----------HHHH
T ss_pred HHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchhee----------hhhh
Confidence 3456788888766 4411 110 1122556666777888887776542 1111111 1223
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 90 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 137 (732)
Q Consensus 90 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (732)
.|++++|.+..+. .++...|..+|..+.+.++++.|+++|.++
T Consensus 665 ~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 665 VGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5688888887543 356788888999999999999998888875
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.73 E-value=0.7 Score=48.75 Aligned_cols=191 Identities=9% Similarity=-0.025 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA-----YCNMGVIYKN-RGDLESAIACYERCLAVSPNFEIAKNNM 76 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l 76 (732)
.+.+.+|..|...|++++-.+++......-+..+.+ ...+-..+.. -+..+.-++.+.++++...+....+ ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f-lr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF-LR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 467899999999999999999988765543332222 2233333332 3556666677777776543322111 12
Q ss_pred HHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC---
Q 004753 77 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC--- 144 (732)
Q Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~--- 144 (732)
-..-..++..|...|+|.+|.+.+.+..+.-.. ..+++..-..+|...+++.++...+.++.... +..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 234457888999999999999999988875222 23577788889999999999999999987652 122
Q ss_pred -HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC--H---HHHHHHHHHHHHcCC
Q 004753 145 -AEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNF--S---QSLNNLGVVYTVQGK 194 (732)
Q Consensus 145 -~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~--~---~~~~~la~~~~~~g~ 194 (732)
+.....-|.++. ..++|.+|...|-++++..... + .+...++.+-...++
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 334556678888 8999999999999987543222 1 233444444444454
No 290
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.074 Score=60.98 Aligned_cols=112 Identities=14% Similarity=0.047 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHhh--------CCCC----------HHHHHHH
Q 004753 127 FDMAIVFYELAFHFNPHCAEACNNLGVIYK--D-RDNLDKAVECYQMALSI--------KPNF----------SQSLNNL 185 (732)
Q Consensus 127 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~l 185 (732)
++.|++++++..+.+|.....+ ..+.+.. . ..+--+|++.+.++++. .+.+ ...+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 5677777777777777543222 2222211 1 12344566666666531 2222 2245556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 186 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 186 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
+..+...|+++-|+++.++++...|.+-..|+.|+.+|..+|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 777888999999999999999999999999999999999999999998776655
No 291
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.61 E-value=1.2 Score=40.13 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=47.7
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c---------------CCCCHH
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--F---------------NPHCAE 146 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~ 146 (732)
+......|++..++-.+.+ -+...+.+.-+.+|...++|..|+..+++.++ . +|.+.+
T Consensus 40 ~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 3344445566555544432 23344555555666666666666666666662 1 122222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004753 147 -ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 177 (732)
Q Consensus 147 -~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 177 (732)
.+..+|.++.+.|+.++|+.++.......+-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 3444566666666666666666666655543
No 292
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=95.44 E-value=0.02 Score=60.15 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=60.9
Q ss_pred CcCC-HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCC
Q 004753 480 AKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 558 (732)
Q Consensus 480 ~K~~-~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~ 558 (732)
.|.= .+.+...++.|.+. +..+++.|.+. .++...+..+..+ ..-+.+.|... -.+..+++..+|+++-.
T Consensus 198 ~k~wp~~~~~~l~~~l~~~-g~~vvl~g~~~----e~~~~~~i~~~~~--~~~~~l~g~~s-l~e~~ali~~a~~~i~~- 268 (349)
T 3tov_A 198 EKRWPAERFAHVADYFGRL-GYKTVFFGGPM----DLEMVQPVVEQME--TKPIVATGKFQ-LGPLAAAMNRCNLLITN- 268 (349)
T ss_dssp GGCCCHHHHHHHHHHHHHH-TCEEEECCCTT----THHHHHHHHHTCS--SCCEECTTCCC-HHHHHHHHHTCSEEEEE-
T ss_pred cCCCCHHHHHHHHHHHHhC-CCeEEEEeCcc----hHHHHHHHHHhcc--cccEEeeCCCC-HHHHHHHHHhCCEEEEC-
Confidence 4443 34444444444433 66777776552 2233333333332 23366777765 57899999999999831
Q ss_pred CCCCcccHHHhhhcCCCeeecCCCcccccch
Q 004753 559 PYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 559 ~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
-.|+.-+ |.++|+|+|++-|.+...+.+
T Consensus 269 --DsG~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 296 (349)
T 3tov_A 269 --DSGPMHV-GISQGVPIVALYGPSNPFFYG 296 (349)
T ss_dssp --SSHHHHH-HHTTTCCEEEECSSCCHHHHS
T ss_pred --CCCHHHH-HHhcCCCEEEEECCCCccccC
Confidence 2455555 889999999999998766654
No 293
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.18 Score=57.71 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 113 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 170 (732)
Q Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 170 (732)
.+...+..+...|+++-|+++.++|+...|.....|+.|+.+|..+|+|+.|+-.+..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3344455666667777777777777777777777777777777777777777655443
No 294
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.12 E-value=0.64 Score=54.07 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=93.7
Q ss_pred HHHHHCCCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 44 VIYKNRGDLESAIA-CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 122 (732)
Q Consensus 44 ~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 122 (732)
......+++++|.+ ++. .-++.. .. ..+...+...|.+++|++..+ ++... .....
T Consensus 607 ~~~~~~~~~~~a~~~~l~----~i~~~~-~~-------~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l 663 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP----NVEGKD-SL-------TKIARFLEGQEYYEEALNISP--------DQDQK---FELAL 663 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG----GCCCHH-HH-------HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHH
T ss_pred hHHHHhCCHHHHHHHHHh----cCCchH-HH-------HHHHHHHHhCCChHHheecCC--------Ccchh---eehhh
Confidence 34456888888876 431 111000 11 223333445678888876653 22222 23457
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 123 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 202 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 202 (732)
..|++++|.+..+. .++...|..+|..+.+.++++.|+++|.++-. +..+..++...|+.++..+..
T Consensus 664 ~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 664 KVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHH
Confidence 78999999988643 35688999999999999999999999998622 223444445566666555544
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 203 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 203 ~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
+.+.... +. .....+|.+.|++++|++.|.+.
T Consensus 731 ~~a~~~~-~~----~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTG-KF----NLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTT-CH----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcC-ch----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 4443321 11 11223466678888888777665
No 295
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.99 E-value=2.4 Score=47.58 Aligned_cols=223 Identities=12% Similarity=-0.015 Sum_probs=129.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----------
Q 004753 14 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD----------- 82 (732)
Q Consensus 14 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----------- 82 (732)
..+++..-+.++.+ .|.+....+.........|+..+|....+++.......+.....+...+..
T Consensus 84 ~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 84 RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLE 159 (618)
T ss_dssp HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence 35556555554433 377888888888889999998888887777765543333222222222211
Q ss_pred hhhhHhhcCCHHHHHHHHHH-------------HHHhCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHH
Q 004753 83 LGTKVKLEGDINQGVAYYKK-------------ALYYNWHYADA-------------MYNLGVAYGEMLKFDMAIVFYEL 136 (732)
Q Consensus 83 lg~~~~~~g~~~~A~~~~~~-------------al~~~p~~~~~-------------~~~la~~~~~~g~~~~A~~~~~~ 136 (732)
........|+...|...... ++..+|..... ...++.......+.+.|...+.+
T Consensus 160 R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~ 239 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPS 239 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 11122233444443333221 12223332221 22233344445577888888877
Q ss_pred HHhcCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 137 AFHFNPHCAEA----CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 212 (732)
Q Consensus 137 al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 212 (732)
..+...-+... ...++.-+...+...++...+.+......+ ......++....+.|+++.|..++++.-......
T Consensus 240 ~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~ 318 (618)
T 1qsa_A 240 LAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEK 318 (618)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGS
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHcccccccc
Confidence 65443333222 222333333344356777777776554433 3334444445567799999999998765544456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 213 AEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 213 ~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
....+.+|.++..+|+.++|..+|+++..
T Consensus 319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 319 DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 78889999999999999999999999875
No 296
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=94.93 E-value=0.059 Score=55.73 Aligned_cols=89 Identities=12% Similarity=0.214 Sum_probs=55.0
Q ss_pred HHHHHHHhHc--CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCC-Ccc
Q 004753 488 QVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA-GTT 564 (732)
Q Consensus 488 ~~~~~il~~~--p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~-g~~ 564 (732)
+-|+++.+.. .+.++++.+++ +..+ .+.+.+.+ +. ..+.+.|... -.+..+++..||+++ .+ .|+
T Consensus 197 ~~~~~l~~~L~~~~~~vvl~~g~---~~e~-~~~~~i~~-~~--~~~~l~g~~s-l~el~ali~~a~l~I----~~DSG~ 264 (326)
T 2gt1_A 197 EHWRELIGLLADSGIRIKLPWGA---PHEE-ERAKRLAE-GF--AYVEVLPKMS-LEGVARVLAGAKFVV----SVDTGL 264 (326)
T ss_dssp HHHHHHHHHTTTTCCEEEECCSS---HHHH-HHHHHHHT-TC--TTEEECCCCC-HHHHHHHHHTCSEEE----EESSHH
T ss_pred HHHHHHHHHHHHCCCcEEEecCC---HHHH-HHHHHHHh-hC--CcccccCCCC-HHHHHHHHHhCCEEE----ecCCcH
Confidence 4555555443 36677775322 1222 22233332 22 2356777765 578999999999997 32 455
Q ss_pred cHHHhhhcCCCeeecCCCcccccch
Q 004753 565 TTCESLYMGVPCVTMAGSVHAHNVG 589 (732)
Q Consensus 565 t~~eal~~GvPvvt~~g~~~~~r~~ 589 (732)
.-+ |.++|+|+|++-|.+...|.+
T Consensus 265 ~Hl-Aaa~g~P~v~lfg~t~p~~~~ 288 (326)
T 2gt1_A 265 SHL-TAALDRPNITVYGPTDPGLIG 288 (326)
T ss_dssp HHH-HHHTTCCEEEEESSSCHHHHC
T ss_pred HHH-HHHcCCCEEEEECCCChhhcC
Confidence 556 667999999999887665554
No 297
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.30 E-value=0.65 Score=45.73 Aligned_cols=121 Identities=10% Similarity=-0.041 Sum_probs=72.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 200 (732)
Q Consensus 121 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 200 (732)
+.+.|+.++|++.....++.+|.+......+..++.-.|+++.|.+.++.+.+++|+.......+-.+ =.|+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHH
Confidence 44566777777777777777777777777777777777777777777777777777654322111110 01111
Q ss_pred HHHHHHHh--C---CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 004753 201 MIEKAIAA--N---PTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 248 (732)
Q Consensus 201 ~l~~al~~--~---p~~---~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p~~~~ 248 (732)
.=++.+.- . +.. ......-+......|+.++|...-.++++..|....
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111111 1 111 222333455566789999999999999999887654
No 298
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.79 Score=42.26 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=66.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004753 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 200 (732)
Q Consensus 121 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 200 (732)
..+.|+++.|.+..++. ++...|..+|......|+++-|..+|+++-. +..+..+|...|+.++-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 35678888888776654 4577788888888888888888888877522 2334445566677666555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 201 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 239 (732)
Q Consensus 201 ~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~a 239 (732)
..+.+..... +.....++..+|+++++++.|.+.
T Consensus 82 la~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5554433321 222344567788888888888665
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.13 E-value=3.2 Score=37.52 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hC--C-------------C
Q 004753 6 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA--VS--P-------------N 68 (732)
Q Consensus 6 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~--p-------------~ 68 (732)
..++..++..|.|..++-++.+ -+...+.+..+.||....+|.+|+..+++.+. .+ | .
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 4567788889999988876643 35677888899999999999999999999993 22 2 2
Q ss_pred CHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHH
Q 004753 69 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 112 (732)
Q Consensus 69 ~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 112 (732)
+.+. .+..+|.+..+.|+.++|+.++.......+-.+.
T Consensus 112 DkEf------Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 112 DEEF------FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp CHHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHH------HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 2222 2344566666777888888888888887776544
No 300
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.07 E-value=0.68 Score=49.03 Aligned_cols=109 Identities=13% Similarity=0.007 Sum_probs=73.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004753 120 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 198 (732)
Q Consensus 120 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 198 (732)
.....|+.+.|...+++|+.+.....-.- .. ...+-.+ ...+++.. ..+...++..+...|++++|
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHHH
Confidence 33445778888888888887743221000 00 0111111 11111111 13455677788899999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 199 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 199 ~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
+..+++++..+|-+..++..+..+|...|+..+|++.|+++-+
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988744
No 301
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.01 E-value=0.69 Score=45.55 Aligned_cols=59 Identities=19% Similarity=0.092 Sum_probs=40.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH
Q 004753 12 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 70 (732)
Q Consensus 12 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 70 (732)
++..|+.++|++..+..++.+|.+......+...+.-.|++++|.+-++.+.+++|+..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 45566677777777777777777777777777777777777777777777777766543
No 302
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=93.99 E-value=0.13 Score=51.99 Aligned_cols=85 Identities=7% Similarity=-0.007 Sum_probs=53.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC
Q 004753 501 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 501 ~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~ 580 (732)
..++.|.+. ...+++++..... .++.+.+.+. +...+|..+|+++. .||+|+.|++++|+|+|..+
T Consensus 186 i~vv~G~~~---~~~~~l~~~~~~~----~~v~v~~~~~---~m~~~m~~aDlvI~----~gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 186 ISIATSSSN---PNLKKLQKFAKLH----NNIRLFIDHE---NIAKLMNESNKLII----SASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp EEEEECTTC---TTHHHHHHHHHTC----SSEEEEESCS---CHHHHHHTEEEEEE----ESSHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCc---hHHHHHHHHHhhC----CCEEEEeCHH---HHHHHHHHCCEEEE----CCcHHHHHHHHcCCCEEEEe
Confidence 444455543 2456666655442 3688888764 45666777999996 35689999999999998865
Q ss_pred CCcccccchhHHhhhcCCCc
Q 004753 581 GSVHAHNVGVSLLTKVGLKH 600 (732)
Q Consensus 581 g~~~~~r~~~s~l~~~gl~~ 600 (732)
=... .+.-+..|...|...
T Consensus 252 ~~~~-Q~~nA~~l~~~G~~~ 270 (282)
T 3hbm_A 252 YVKN-QESTATWLAKKGYEV 270 (282)
T ss_dssp CSGG-GHHHHHHHHHTTCEE
T ss_pred CCCC-HHHHHHHHHHCCCEE
Confidence 3211 223444555555543
No 303
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=93.67 E-value=0.14 Score=49.52 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=42.3
Q ss_pred cEEEcCCcCCcHHHHHhcc-cccEEecCCCCCCcccHHHhhhcCCCeeecCCCccc---ccchhHHhhhcCCC
Q 004753 531 RVDLLPLILLNHDHMQAYS-LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTKVGLK 599 (732)
Q Consensus 531 rv~~~~~~~~~~~~~~~~~-~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~s~l~~~gl~ 599 (732)
++...+.++ +...++. .||+++. .+|.+|++|++++|+|.|..+..... ...-|..|...|..
T Consensus 115 ~v~v~~f~~---~m~~~l~~~AdlvIs---haGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~ 181 (224)
T 2jzc_A 115 KVIGFDFST---KMQSIIRDYSDLVIS---HAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYV 181 (224)
T ss_dssp EEEECCSSS---SHHHHHHHHCSCEEE---SSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCC
T ss_pred eEEEeeccc---hHHHHHHhcCCEEEE---CCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCE
Confidence 556666654 4445566 6999982 27778999999999999998865321 11234556666664
No 304
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.47 E-value=0.5 Score=51.55 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 114 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 190 (732)
Q Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 190 (732)
+..+|.+......++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|.+++......+.+..++...+.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555544444555555554443
No 305
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.38 E-value=1.7 Score=40.03 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=69.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 89 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 168 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 168 (732)
..|+++.|.+..+.. ++...|..+|......|+++-|+.+|.++-. +-.+..+|...|+.++-.+..
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHH
Confidence 367999999998765 6788999999999999999999999988632 233445566677776655555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004753 169 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 204 (732)
Q Consensus 169 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 204 (732)
+.+..... ++....+++.+|+++++++.|.+
T Consensus 84 ~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55543322 12223446678888888876644
No 306
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.51 Score=50.75 Aligned_cols=100 Identities=12% Similarity=-0.008 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCC--CCH---
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYA--- 111 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~--- 111 (732)
.++..+|..|...|++++|.+.|.++........ .....+..+-.++...+++..+..++.++..... .+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 3455555555555555555555555554432221 0112223333333444555555555555543311 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 112 -DAMYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 112 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
......|.++...++|.+|...|..++..
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12333445555566666666666555543
No 307
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.67 E-value=1.2 Score=52.34 Aligned_cols=98 Identities=7% Similarity=-0.067 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 004753 112 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLG 186 (732)
Q Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 186 (732)
..+..+-..|.+.|+.++|.+++++..+. -.-+...|+.+...|.+.|+.++|.+.|++..+.. .-+...|+.+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 36888899999999999999999775432 23357889999999999999999999999987652 34577888888
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHhC
Q 004753 187 VVYTVQGK-MDAAAEMIEKAIAAN 209 (732)
Q Consensus 187 ~~~~~~g~-~~eA~~~l~~al~~~ 209 (732)
.++.+.|+ .++|.++++++.+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 89999887 578899999998764
No 308
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.66 E-value=13 Score=39.94 Aligned_cols=188 Identities=10% Similarity=-0.042 Sum_probs=103.4
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh
Q 004753 15 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 88 (732)
Q Consensus 15 ~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 88 (732)
.+++++|++.+....+. .+....+...+..++...++++...+.+.-..+.......+...+...... ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~---~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVME---YLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHH---HHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHh
Confidence 36788888877554432 233577888888899999999988887766555444433332222111111 000
Q ss_pred hcCCHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----CHHHHHHH
Q 004753 89 LEGDINQGVAYYKKALYYN----WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PH----CAEACNNL 151 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~l 151 (732)
.....+. +.....+..- .+ .......|+.+|...|++.+|...+.....-. .. -.+.+...
T Consensus 106 ~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 106 SSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred cCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1111111 1111222111 10 23345667778888888888877777765321 11 13455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004753 152 GVIYKDRDNLDKAVECYQMALS---IKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIA 207 (732)
Q Consensus 152 a~~~~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~~al~ 207 (732)
..++...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++.
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6677777777777777776532 122222 2445566666667777777766666654
No 309
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.64 E-value=0.22 Score=53.96 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=60.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHh---c--------CCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhh---
Q 004753 119 VAYGEMLKFDMAIVFYELAFH---F--------NPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALSI--- 174 (732)
Q Consensus 119 ~~~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~--- 174 (732)
..+...+++++|.++....+. + +.-.+.+|+.++.++...|+..+.. ..+..+++.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345677889988888776651 1 3334667777777777777665432 222233322
Q ss_pred --CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 175 --KPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 175 --~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
++. .+..++.+-..|...+.++.|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 222 24467788889999999999999999984 4432 45677899999999999999999999999888
Q ss_pred CChh
Q 004753 245 DSRN 248 (732)
Q Consensus 245 ~~~~ 248 (732)
.+..
T Consensus 302 ~~~~ 305 (523)
T 4b4t_S 302 HNSK 305 (523)
T ss_dssp CSSS
T ss_pred cchh
Confidence 6643
No 310
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.55 E-value=0.54 Score=51.34 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004753 147 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 225 (732)
Q Consensus 147 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~ 225 (732)
.+..+|.+......++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|-+++......+.+..+|..++.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5567788888888888888888888888888888888888888888888888888888887776678888888777654
No 311
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.49 E-value=1.9 Score=45.44 Aligned_cols=113 Identities=14% Similarity=-0.019 Sum_probs=79.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHH
Q 004753 42 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG-VAYYKKALYYNWHYADAMYNLGVA 120 (732)
Q Consensus 42 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~ 120 (732)
.|......|+.++|...+++++.+.....-. ... ...+-.+ ...++.. ...+...++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~------------~~~--~~~w~~~~r~~l~~~------~~~a~~~~~~~ 180 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLR--DFQFVEPFATALVED------KVLAHTAKAEA 180 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGT--TSTTHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC------------CCC--chhHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3444455789999999999999986543210 000 0111111 1122211 12345667788
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 121 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 174 (732)
Q Consensus 121 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 174 (732)
+...|++.+++..+++++..+|-+..++..+-.++...|+..+|++.|+++-+.
T Consensus 181 ~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999887553
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.83 Score=49.56 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=67.5
Q ss_pred hhcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhc-----C
Q 004753 88 KLEGDINQGVAYYKKALY---Y--------NWHYADAMYNLGVAYGEMLKFDMAI----------VFYELAFHF-----N 141 (732)
Q Consensus 88 ~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~-----~ 141 (732)
...+++++|.++....+. + +.-.+.+|+.++.++...|+..... ..+-.++.. +
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 356788888888776651 1 2334567888888887777765432 222222221 2
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004753 142 PH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 213 (732)
Q Consensus 142 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 213 (732)
+. .+..++.+-..|...+.+++|..+..++. .|.. ...++.+|.++..+++|.+|.+++..|+...|.+.
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 22 25667778899999999999999999984 4432 44778899999999999999999999999877542
Q ss_pred -------HHHHHHHHHHHHcCCHHH
Q 004753 214 -------EAYNNLGVLYRDAGSISL 231 (732)
Q Consensus 214 -------~~~~~La~~~~~~g~~~e 231 (732)
.++..+..+-.-+|+..+
T Consensus 305 ~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 305 KSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 233333444444677553
No 313
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.07 E-value=2.6 Score=51.35 Aligned_cols=160 Identities=14% Similarity=0.000 Sum_probs=76.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHh
Q 004753 9 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 88 (732)
Q Consensus 9 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 88 (732)
...+...++++-+.+ .+...+.++...+.+|.++...|++++|..+|+++-.-........
T Consensus 819 ~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~--------------- 879 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF--------------- 879 (1139)
T ss_dssp HHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC---------------
T ss_pred HHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh---------------
Confidence 334455555554433 2334556666667777777777777777777777632111000000
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCC
Q 004753 89 LEGDINQGVAYYKKALYY---NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CA----EACNNLGVIYKDRDN 160 (732)
Q Consensus 89 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~ 160 (732)
....+ +...... .......|..+..++.+.+.++.+++..+.|++..+. +. ..|.++-..+...|+
T Consensus 880 --~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 880 --AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp --SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred --hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 00000 0000010 1112334455555666666666666666666665332 21 145555556666666
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 194 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 194 (732)
|++|...+...-. ......++..+...++..|+
T Consensus 954 ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 954 FDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp SGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCC
Confidence 6666655543211 11223444444444444443
No 314
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.78 E-value=1.8 Score=50.90 Aligned_cols=98 Identities=6% Similarity=-0.092 Sum_probs=80.5
Q ss_pred HHHHHhhhhHhhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 004753 78 IALTDLGTKVKLEGDINQGVAYYKKALYY----NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLG 152 (732)
Q Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 152 (732)
..|..+-..|.+.|+.++|.+.|....+. -.-+...|..+...|.+.|+.++|.++|++..+.. .-+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35677778899999999999999775432 34467899999999999999999999999998752 23577888888
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhhC
Q 004753 153 VIYKDRDN-LDKAVECYQMALSIK 175 (732)
Q Consensus 153 ~~~~~~g~-~~~A~~~~~~al~~~ 175 (732)
..+.+.|+ .++|.+++++..+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 89999887 578999999988764
No 315
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.25 E-value=1.8 Score=46.65 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERP--M----YAEAYCNMGVIYKNRGDLESAIACYERCLAV---SPNFEIAKN 74 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 74 (732)
....++.++...|++.+|...+.......- . ..+.+.....+|...+++.+|...+.++... .+..+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~---~ 215 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE---S 215 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH---H
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH---H
Confidence 456789999999999999999999864311 1 2567888899999999999999999987431 22222 2
Q ss_pred HHHHHHHHhhhhHhhcCCHHHHHHHHHHHHH
Q 004753 75 NMAIALTDLGTKVKLEGDINQGVAYYKKALY 105 (732)
Q Consensus 75 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 105 (732)
..+..+...|.++...++|.+|-.+|..++.
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3345566677777778888888887777664
No 316
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.62 E-value=5.9 Score=46.34 Aligned_cols=188 Identities=11% Similarity=0.063 Sum_probs=106.7
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CC-HHHHHHHHHHHHHhh
Q 004753 14 ELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NF-EIAKNNMAIALTDLG 84 (732)
Q Consensus 14 ~~g~~~~A~~~~~~al~~~-p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~-~~~~~~la~~~~~lg 84 (732)
..|+.++++..+.+.+... ..+ .-+.+.+|.++...+ ++++.++...+.... .. .......+ +-..+|
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~g-AaLGLG 462 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHG-ASLGIG 462 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHH-HHHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHH-HHHHHH
Confidence 4577778888887766522 122 346677777776655 478888888776543 11 01122223 334677
Q ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 004753 85 TKVKLEGDINQGVAYYKKALYYNWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 162 (732)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 162 (732)
.++.-.++ +++.+.+...+..+.... .+-+.+|.++.-.|+-+....++..+.+-..+...-...+|..+...|+.+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 76665555 466777777776443211 345677888888888776666666666533332222333444445667776
Q ss_pred HHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004753 163 KAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIA 207 (732)
Q Consensus 163 ~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~~al~ 207 (732)
.+....+..... .++. +-..+|..|...|+...-.+.+..+..
T Consensus 542 ~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 542 LADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp GGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 666665554432 2232 233456666777775444445555543
No 317
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.44 E-value=3.9 Score=49.83 Aligned_cols=101 Identities=14% Similarity=-0.025 Sum_probs=70.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHHcCCH
Q 004753 105 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------------------NPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 105 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~g~~ 161 (732)
...+.++...+.+|.++...|++++|..+|+++-.- ....+..|..+..++.+.+.+
T Consensus 836 ~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~ 915 (1139)
T 4fhn_B 836 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY 915 (1139)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC
T ss_pred hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH
Confidence 445666667788888888888888888888876321 111234566677777888888
Q ss_pred HHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 162 DKAVECYQMALSIKP-NFSQ----SLNNLGVVYTVQGKMDAAAEMIEKA 205 (732)
Q Consensus 162 ~~A~~~~~~al~~~p-~~~~----~~~~la~~~~~~g~~~eA~~~l~~a 205 (732)
+.+++..+.|++..+ ++.. .|.++=..+...|+|++|...+...
T Consensus 916 ~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 916 IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 888888888887654 3322 5566667777888888887776544
No 318
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.35 E-value=1.4 Score=47.37 Aligned_cols=97 Identities=14% Similarity=0.014 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH----HHH
Q 004753 146 EACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYA----EAY 216 (732)
Q Consensus 146 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~----~~~ 216 (732)
.++..+|..|...|++++|.++|.++..... .-.+.+.....++...+++..+..+++++-... ..++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3555566666666666666666666554321 223455555666666666666666666664431 1111 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004753 217 NNLGVLYRDAGSISLAIDAYEQCLKI 242 (732)
Q Consensus 217 ~~La~~~~~~g~~~eA~~~~~~al~l 242 (732)
...|.++...++|.+|..+|-.++.-
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 33455555666777776666666544
No 319
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.33 E-value=8.3 Score=45.10 Aligned_cols=251 Identities=12% Similarity=0.109 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALERP---M---Y----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 73 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~---~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 73 (732)
+++.+|.++...+ .+++.++...+..+. . . ..+-..+|.++.-.++ +++.+.+...+..+.. ...
T Consensus 415 AllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~--~~~ 489 (963)
T 4ady_A 415 SLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSA--TSG 489 (963)
T ss_dssp HHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCH--HHH
T ss_pred HHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCH--HHH
Confidence 5666777766555 478888888776543 0 1 1355677887776665 5677777777764432 111
Q ss_pred HHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHH
Q 004753 74 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNL 151 (732)
Q Consensus 74 ~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l 151 (732)
..+-+.+|.++.-.|+-+-....+..+.+...+...-...+|..+...|+.+.+....+......... ..+-+.+
T Consensus 490 ---~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~al 566 (963)
T 4ady_A 490 ---EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTI 566 (963)
T ss_dssp ---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ---HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 23344566666668887766666666665333222223344445556788777776666654432111 1233456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CC-
Q 004753 152 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--GS- 228 (732)
Q Consensus 152 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~--g~- 228 (732)
|..|...|+...-.+.+..+..-..++..-..-+|..+...|+.+.+...++... ...++.+.+..+.++-.. |+
T Consensus 567 glAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~--~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 567 ALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS--KSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG--GCSCHHHHHHHHHHHHHHTSSSC
T ss_pred HHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhccCCC
Confidence 7778889996555557776665333333322223333334455443333333222 234566665544444333 22
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHhhhccCCcH
Q 004753 229 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 266 (732)
Q Consensus 229 ~~eA~~~~~~al~l~p~~~~a~~~~~la~~~~~~~~~~ 266 (732)
..+++..+.+... ++ +...+.+-++++..+..|..+
T Consensus 645 ~~~aid~L~~L~~-D~-d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 645 LQSAIDVLDPLTK-DP-VDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp CHHHHHHHHHHHT-CS-SHHHHHHHHHHHHHHSTTCCT
T ss_pred cHHHHHHHHHHcc-CC-CHHHHHHHHHHHHHHhcCCcc
Confidence 2678888887753 44 455566666777777665443
No 320
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=88.75 E-value=2.4 Score=48.50 Aligned_cols=113 Identities=14% Similarity=0.003 Sum_probs=71.5
Q ss_pred CCCcEEEecCCC--CcCCHHH-HHHHHHHH--hHcC-----CcEEEEecCCCCCHHHHHHHHHHHHHc--------CCCC
Q 004753 468 NGFITFGSFNNL--AKITPKV-LQVWARIL--CAVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLES 529 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~~-~~~~~~il--~~~p-----~~~l~l~~~~~~~~~~~~~~~~~~~~~--------Gv~~ 529 (732)
.+.+++|-.-|+ +|...-. +....+++ ...| ...+++.|++.........+.+.+... .| +
T Consensus 548 pd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v-~ 626 (824)
T 2gj4_A 548 PNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVV-G 626 (824)
T ss_dssp TTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTT-G
T ss_pred CCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCccc-C
Confidence 456788888888 8876554 44544443 2344 467888887753334444444444332 23 4
Q ss_pred C--cEEEcCCcCCcHHHHHhcccccEEecCCC--C-CCcccHHHhhhcCCC-eeecCCC
Q 004753 530 L--RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVP-CVTMAGS 582 (732)
Q Consensus 530 ~--rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~-~g~~t~~eal~~GvP-vvt~~g~ 582 (732)
+ +|+|++--. ..--...+..|||+|-++- + ..||+-+=||.-|++ ++|+.|.
T Consensus 627 ~~lKVvFl~nYd-vslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGa 684 (824)
T 2gj4_A 627 DRLRVIFLENYR-VSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGA 684 (824)
T ss_dssp GGEEEEEETTCC-HHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTT
T ss_pred CceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCc
Confidence 6 899987632 2222336789999999996 7 678888888888776 5555554
No 321
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.91 E-value=24 Score=35.55 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 110 YADAMYNLGVAYGEMLKFDMAIVFY 134 (732)
Q Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~ 134 (732)
+++.+..+|..|.+.+++.+|..+|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4445555555555555555555444
No 322
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.26 E-value=28 Score=35.47 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 108 WHYADAMYNLGVAYGEMLKFDMAIVFY 134 (732)
Q Consensus 108 p~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (732)
-.+++.+..+|..|.+.+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 356778888888888888888887776
No 323
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.97 E-value=59 Score=36.28 Aligned_cols=127 Identities=8% Similarity=-0.150 Sum_probs=73.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 43 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 122 (732)
Q Consensus 43 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 122 (732)
+.......+.+.|...+.+..+...-+.... ......++......+...++...+.+......+ .......+....
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Al 296 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQI---QELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHH---HHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHH---HHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHH
Confidence 3444445577777777776654333222211 112223333333444355666666665543333 333333333445
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 123 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 173 (732)
Q Consensus 123 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 173 (732)
..|+++.|..++++.-..........+-+|..+...|+.++|..+|+++.+
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 668888888888765543344567778888888888888888888887764
No 324
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=83.34 E-value=6.9 Score=44.68 Aligned_cols=109 Identities=12% Similarity=-0.013 Sum_probs=73.6
Q ss_pred CCCcEEEecCCC--CcCCHH-HHHHHHHHHh--HcC-----CcEEEEecCCCCCHHHHHHHHHHHHHc--------CCCC
Q 004753 468 NGFITFGSFNNL--AKITPK-VLQVWARILC--AVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLES 529 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~-~~~~~~~il~--~~p-----~~~l~l~~~~~~~~~~~~~~~~~~~~~--------Gv~~ 529 (732)
.+.+++|-.-|+ +|...- ++....++++ ..| ...+++.|++.........+.+.+... -+ +
T Consensus 514 pd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~-~ 592 (796)
T 2c4m_A 514 PESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEV-S 592 (796)
T ss_dssp TTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTT-T
T ss_pred CCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhcccccc-C
Confidence 456788888888 887766 5666555543 333 477888787654444444554444443 34 5
Q ss_pred C--cEEEcCCcCCcHHHHHhcccccEEecCCC--C-CCcccHHHhhhcCCCeee
Q 004753 530 L--RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVT 578 (732)
Q Consensus 530 ~--rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~-~g~~t~~eal~~GvPvvt 578 (732)
+ +|+|++--. ..--...+..|||++-++- + ..||+-+=+|.-|++.|.
T Consensus 593 ~~lKVvFl~nY~-vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iG 645 (796)
T 2c4m_A 593 PLLKVVFVENYN-VSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLG 645 (796)
T ss_dssp TTEEEEEETTCC-HHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEE
T ss_pred CceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEe
Confidence 7 899987632 2222346789999999996 7 779999999999998773
No 325
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=82.00 E-value=9 Score=43.74 Aligned_cols=109 Identities=15% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CCCcEEEecCCC--CcCCHH-HHHHHHHHHh--Hc-----CCcEEEEecCCCCCHHHHHHHHHHHHHc--------CCCC
Q 004753 468 NGFITFGSFNNL--AKITPK-VLQVWARILC--AV-----PNSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLES 529 (732)
Q Consensus 468 ~~~~~f~~~~~~--~K~~~~-~~~~~~~il~--~~-----p~~~l~l~~~~~~~~~~~~~~~~~~~~~--------Gv~~ 529 (732)
.+.+++|-.-|+ +|...- ++....++++ .. ....+++.|++.........+.+.+... -+ +
T Consensus 524 pd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~-~ 602 (796)
T 1l5w_A 524 PQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLV-G 602 (796)
T ss_dssp TTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTT-G
T ss_pred CCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhcccccc-C
Confidence 456778888888 887666 5555554443 12 2477788787654444444555555443 34 5
Q ss_pred C--cEEEcCCcCCcHHHHHhcccccEEecCCC--C-CCcccHHHhhhcCCCeee
Q 004753 530 L--RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVT 578 (732)
Q Consensus 530 ~--rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~-~g~~t~~eal~~GvPvvt 578 (732)
+ +|+|++--. ..--...+..|||+|-++- + ..||+-+=+|.-|++.|.
T Consensus 603 ~~lKVvfl~nY~-vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iG 655 (796)
T 1l5w_A 603 DKLKVVFLPDYC-VSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVG 655 (796)
T ss_dssp GGEEEEECSSCC-HHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEE
T ss_pred CceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeec
Confidence 7 899987632 2222336789999999996 7 779999999999998774
No 326
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=67.73 E-value=1.1e+02 Score=31.04 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004753 176 PNFSQSLNNLGVVYTVQGKMDAAAEMI 202 (732)
Q Consensus 176 p~~~~~~~~la~~~~~~g~~~eA~~~l 202 (732)
-.++..+..+|..|.+.+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 356777777888888877777777766
No 327
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=65.57 E-value=81 Score=35.40 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=17.3
Q ss_pred HHHHHH--HHcCCHHHHHHHHHHHHhhCCCC
Q 004753 218 NLGVLY--RDAGSISLAIDAYEQCLKIDPDS 246 (732)
Q Consensus 218 ~La~~~--~~~g~~~eA~~~~~~al~l~p~~ 246 (732)
.+..++ ...|++++|++.+++ +.+-|-+
T Consensus 541 ~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 541 NISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344444 667888888877777 4556654
No 328
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.08 E-value=1.2e+02 Score=30.47 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004753 143 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNL 219 (732)
Q Consensus 143 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~eA~~~l~~al~~~p~~~~~~~~L 219 (732)
.++..+..+|..|.+.+++.+|..+|-.. +.+++..+..+-.-+... |...++--++-+ .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------a 194 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------L 194 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------H
Confidence 46788888888888888888888877421 111233333222222222 333332222222 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 004753 220 GVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 220 a~~~~~~g~~~eA~~~~~~al~ 241 (732)
...|...|+...|...++...+
T Consensus 195 VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 195 VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 2346678888888888776653
No 329
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=64.09 E-value=25 Score=30.76 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=29.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 189 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 189 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
+..+|+-++-.+.+...+..++-+++.+..+|.+|.+.|+..+|.+.+.+|.+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34455555555555554444444566666666666666666666666665554
No 330
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=61.75 E-value=14 Score=30.87 Aligned_cols=76 Identities=8% Similarity=0.083 Sum_probs=50.0
Q ss_pred cEEEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhh--cCCCe
Q 004753 500 SRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY--MGVPC 576 (732)
Q Consensus 500 ~~l~l~-~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~--~GvPv 576 (732)
.+++++ +.|..+.-+.+++++.+.+.|++ -.|.-.+. .++-.....+|++|-|.+......-++... .|+||
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~-~~i~~~~~----~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNIN-ATIEAIAE----TRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPI 79 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCS-EEEEEECS----TTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCC-eEEEEecH----HHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCE
Confidence 444554 45555557888999999999995 23444333 233334677999999988766554454443 58999
Q ss_pred eecC
Q 004753 577 VTMA 580 (732)
Q Consensus 577 vt~~ 580 (732)
+...
T Consensus 80 ~~I~ 83 (109)
T 2l2q_A 80 EIIN 83 (109)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8744
No 331
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=61.13 E-value=49 Score=29.70 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=46.1
Q ss_pred EEEEecCCCC---C-HHHHHHHHHHHHHcCCCCCcEEEcCCcCC-------cHHHHHhcccccEE---ecCCC--CCCcc
Q 004753 501 RLVVKCKPFC---C-DSVRHRFLSTLEQLGLESLRVDLLPLILL-------NHDHMQAYSLMDIS---LDTFP--YAGTT 564 (732)
Q Consensus 501 ~l~l~~~~~~---~-~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~-------~~~~~~~~~~~Di~---Ld~~~--~~g~~ 564 (732)
..++.|.++. . -...+++.+.+++.|+. +|.|.... ...-+..+..||++ ||||. ..-..
T Consensus 11 ~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~----v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G 86 (161)
T 2f62_A 11 KIYIAGPAVFNPDMGASYYNKVRELLKKENVM----PLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG 86 (161)
T ss_dssp EEEEESGGGGSTTTTHHHHHHHHHHHHTTTCE----EECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHCCCE----EECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc
Confidence 3455554432 2 24557788888888873 45554211 11225667889998 45432 22233
Q ss_pred cHHH---hhhcCCCeeecCCC
Q 004753 565 TTCE---SLYMGVPCVTMAGS 582 (732)
Q Consensus 565 t~~e---al~~GvPvvt~~g~ 582 (732)
|..| |.+.|.|||.+..+
T Consensus 87 TafEiGyA~AlgKPVi~l~~d 107 (161)
T 2f62_A 87 TAFEVGCAAALNKMVLTFTSD 107 (161)
T ss_dssp HHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHHCCCEEEEEEcC
Confidence 6666 66789999998754
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.14 E-value=58 Score=38.52 Aligned_cols=94 Identities=7% Similarity=-0.040 Sum_probs=57.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------h-C
Q 004753 151 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA--------------------A-N 209 (732)
Q Consensus 151 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--------------------~-~ 209 (732)
+...+...|.++-|. +.+...|.++..-+.+|.+|...|++++|..+|+++-. . .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 344444555554332 23344555555556666666666666666666655421 0 1
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChh
Q 004753 210 PT--YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPDSRN 248 (732)
Q Consensus 210 p~--~~~~~~~La~~~~~~g~~~eA~~~~~~al~l-~p~~~~ 248 (732)
++ ....|.....++.+.+-++.+++..+.|++. .+++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 2457788899999999999999999999965 445544
No 333
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=57.70 E-value=4.4 Score=33.96 Aligned_cols=81 Identities=10% Similarity=0.013 Sum_probs=52.4
Q ss_pred CcEEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhc--CCC
Q 004753 499 NSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYM--GVP 575 (732)
Q Consensus 499 ~~~l~l~~-~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~--GvP 575 (732)
.-+++|++ .|..+.-+..++++.+++.|++ +..... + ..++-......||+|-.+...--..-++...- |+|
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~---v~i~a~-~-~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ip 80 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVR---VIANSG-A-YGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQ 80 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCS---EEEEEE-E-TTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCc---eEEEEc-c-hHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCc
Confidence 44555554 4555556788999999999996 333211 1 12233344668999988777666666666654 999
Q ss_pred eeecCCCcc
Q 004753 576 CVTMAGSVH 584 (732)
Q Consensus 576 vvt~~g~~~ 584 (732)
|...+...+
T Consensus 81 V~vI~~~~Y 89 (108)
T 3nbm_A 81 IVATRGMEY 89 (108)
T ss_dssp EEECCHHHH
T ss_pred EEEeCHHHh
Confidence 998775544
No 334
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=55.58 E-value=0.00062 Score=72.33 Aligned_cols=214 Identities=14% Similarity=0.139 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004753 2 QPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 81 (732)
Q Consensus 2 a~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 81 (732)
+++|..+|.++...++..+|++.|-++ .+| ..+...-.+..+.|++++=+++++.+-+...+. ..-..+..+|.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dp---s~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~-~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP---SSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCC---CSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST-TTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc-ccHHHHHHHHH
Confidence 457888899999999988888888664 233 345555566677888888888888776653332 22233344444
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 161 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 161 (732)
.++ +..+-.+++ ..|+.++ ....|.-++..|.|+.|.-+|... + -|..|+.++..+|+|
T Consensus 128 k~~-------rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i----s----N~akLAstLV~L~~y 186 (624)
T 3lvg_A 128 KTN-------RLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEY 186 (624)
T ss_dssp TSC-------SSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS----C----CCTTTSSSSSSCSGG
T ss_pred hhC-------cHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC----c----cHHHHHHHHHHHHHH
Confidence 333 222111111 0122221 345566667777776666555432 1 123455566666666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 162 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 162 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
..|++..++| +++..|.....++...+++.-|.-+--..+- .++. +-.+...|...|.+++=+..++.++.
T Consensus 187 q~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 187 QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp GSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 6666665544 3344455555555555555555444433332 1111 11233445555555655566666555
Q ss_pred hCCCChhHHH
Q 004753 242 IDPDSRNAGQ 251 (732)
Q Consensus 242 l~p~~~~a~~ 251 (732)
+..-+....+
T Consensus 258 lErAHmGmFT 267 (624)
T 3lvg_A 258 LERAHMGMFT 267 (624)
T ss_dssp STTCCHHHHH
T ss_pred CCchhHHHHH
Confidence 5444444433
No 335
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=54.68 E-value=1.6e+02 Score=28.59 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 004753 162 DKAVECYQMALS-----IKPNFSQ---SLNNLGVVYTV-QGKMDAAAEMIEKAIA 207 (732)
Q Consensus 162 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~~-~g~~~eA~~~l~~al~ 207 (732)
+.|.+.|++|.+ +.|.+|. ...+.+..|.. .++.++|....++++.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666654 3566654 33444444444 6888888777777654
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.53 E-value=75 Score=37.53 Aligned_cols=109 Identities=14% Similarity=-0.023 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCC--HHHHHHHHHHHHHh
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-PNF--EIAKNNMAIALTDL 83 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~l 83 (732)
.+...+...|+++-|.+ .+..-|.++-.-+.+|.+|...|++++|..+|+++-.-- ... ..........+.
T Consensus 815 ~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~-- 888 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE-- 888 (950)
T ss_dssp HHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH--
T ss_pred HHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC--
Confidence 35566677788775543 456677888888999999999999999999999875321 111 000000000000
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004753 84 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 140 (732)
Q Consensus 84 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 140 (732)
..+........|.....++.+.+-++.+++..+.|++.
T Consensus 889 -------------------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 889 -------------------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp -------------------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------------------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00001111234556667777778888888888888764
No 337
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.72 E-value=1.4e+02 Score=27.70 Aligned_cols=63 Identities=8% Similarity=-0.006 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 244 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~l~p 244 (732)
.|..++..+ ..+...++.+.|...... ....+..|...|..+...|++++|.+.|+..++..-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 444444433 133356666766666554 345677777778888888888888888888877544
No 338
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=50.87 E-value=38 Score=27.99 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=45.6
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecC
Q 004753 502 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 502 l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~ 580 (732)
|++-|.|..+.-+.+++++.++++|++. .|.-.+... ..++. ..+||+|-+........-++...-++||....
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~-~i~a~~~~~-~~~~~---~~~Dvil~~pqv~~~~~~~~~~~~~~~v~vI~ 80 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPV-IIEAFPETL-AGEKG---QNADVVLLGPQIAYMLPEIQRLLPNKPVEVID 80 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSE-EEEEECSSS-TTHHH---HHCSEEEECTTSGGGHHHHHHHSSSSCCCBCC
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCe-EEEEecHHH-HHhhc---cCCCEEEEccchhhhHHHHHHHhcCCCceEEC
Confidence 3444566666678889999999999963 344333322 23333 45899998877666555555554334444333
No 339
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=47.75 E-value=1.9e+02 Score=27.54 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYK 47 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 47 (732)
+..++....+.++|++...+.+++.+.++. ..+-...+..+|.
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 456677777778888888888877776554 3444444455443
No 340
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=46.71 E-value=28 Score=37.25 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 004753 183 NNLGVVYTVQGKMDAAAEMIEKAIAANP--T--------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPDS 246 (732)
Q Consensus 183 ~~la~~~~~~g~~~eA~~~l~~al~~~p--~--------~~~~~~~La~~~~~~g~~~eA~~~~~~al~l-~p~~ 246 (732)
+.+-.+|++.++...+...++..-.... . ....++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 4455677777777777776654433221 1 1345677888888888888888888888877 6654
No 341
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=44.99 E-value=2.2e+02 Score=27.40 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYK 47 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 47 (732)
+..+|...-+.++|++...+.+++.+.++. ..+-...+..+|.
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYK 50 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYK 50 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 455667777777777777777777766554 3334444444443
No 342
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=44.20 E-value=1.4e+02 Score=24.80 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=59.8
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc--ccccEEecCCCCCCcccHHHhhhc---C
Q 004753 499 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDISLDTFPYAGTTTTCESLYM---G 573 (732)
Q Consensus 499 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~--~~~Di~Ld~~~~~g~~t~~eal~~---G 573 (732)
+.+++++.+ +...++.+...+...|. +|..... ..+.+..+ ...|+++ .|-..|...++.+.. .
T Consensus 18 ~~~ilivdd---~~~~~~~l~~~L~~~g~---~v~~~~~---~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~~~~ 86 (137)
T 2pln_A 18 SMRVLLIEK---NSVLGGEIEKGLNVKGF---MADVTES---LEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHSS 86 (137)
T ss_dssp CSEEEEECS---CHHHHHHHHHHHHHTTC---EEEEESC---HHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHHSTT
T ss_pred CCeEEEEeC---CHHHHHHHHHHHHHcCc---EEEEeCC---HHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhcCCC
Confidence 345555543 34677788888888776 3444332 34444433 3478888 555456666666653 8
Q ss_pred CCeeecCCCcccccchhHHhhhcCCCccccC---CHHHHHHHHHHh
Q 004753 574 VPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQL 616 (732)
Q Consensus 574 vPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~---~~~~y~~~a~~l 616 (732)
+|||.+.+..-.. ...-....|..+++.. +.++......++
T Consensus 87 ~~ii~ls~~~~~~--~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 87 IVVLVSSDNPTSE--EEVHAFEQGADDYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp SEEEEEESSCCHH--HHHHHHHTTCSEEEESSCSCHHHHHHHHHHH
T ss_pred ccEEEEeCCCCHH--HHHHHHHcCCceeeeCCCCCHHHHHHHHHHH
Confidence 9999887653222 1122335677777764 445555444333
No 343
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=43.87 E-value=44 Score=28.26 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhHcCCcEEEEecCC--CCCHH--------HHHHHHHHHHH-cCCCCCcEEEcCC
Q 004753 484 PKVLQVWARILCAVPNSRLVVKCKP--FCCDS--------VRHRFLSTLEQ-LGLESLRVDLLPL 537 (732)
Q Consensus 484 ~~~~~~~~~il~~~p~~~l~l~~~~--~~~~~--------~~~~~~~~~~~-~Gv~~~rv~~~~~ 537 (732)
...++.++.+|+..|+..+.|.|.. .++.. -...+.+.+.+ .||+++||...|.
T Consensus 30 ~~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~~Gi~~~ri~~~g~ 94 (123)
T 3td3_A 30 KPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGF 94 (123)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCCSCSCHHHHHHHHHHHHHHHHHHHHHHSCCCGGGEEEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCHHHEEEEEE
Confidence 3567888889999999999888743 22222 12456677776 7999999988765
No 344
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.20 E-value=48 Score=30.98 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=53.6
Q ss_pred HHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhh
Q 004753 491 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESL 570 (732)
Q Consensus 491 ~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal 570 (732)
++.+...-+..++++|... ...+-+.+.+++.|-..--=+|+|....+. .+..+..=|+.+-+-|-.-+..+.||-
T Consensus 56 ~~~i~~~~~~~ilfV~tk~---~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~-~~~~~~~Pdllvv~Dp~~d~~ai~EA~ 131 (202)
T 3j20_B 56 GKFLAKFEPQSILAVSVRL---YGQKPVKKFGEVTGARAIPGRFLPGTMTNP-AVKNFFEPDVLIVTDPRADHQAMREAV 131 (202)
T ss_dssp HHHHHHSCSSCEEEECCCT---TTHHHHHHHHHHHSCCCCCSSCCSSSSSCS-SSSSCCCCSEEEESCTTTSHHHHHHHH
T ss_pred HHHHHhhCCCeEEEEecCh---HHHHHHHHHHHHHCCceeCceecCCCcccH-hHHhccCCCeEEEeCCccchHHHHHHH
Confidence 3444445445566666432 233455555566664332224566544332 234456677777777788899999999
Q ss_pred hcCCCeeecCCC
Q 004753 571 YMGVPCVTMAGS 582 (732)
Q Consensus 571 ~~GvPvvt~~g~ 582 (732)
.+|+|||++...
T Consensus 132 ~l~IP~Ial~DT 143 (202)
T 3j20_B 132 EIGIPIVALVDT 143 (202)
T ss_dssp HHTCCEEEEECT
T ss_pred HcCCCEEEEEcC
Confidence 999999987654
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.53 E-value=1.4e+02 Score=26.70 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH-HHhhhhHhhcCCHHHHHHHHHHHHHh
Q 004753 39 YCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIAL-TDLGTKVKLEGDINQGVAYYKKALYY 106 (732)
Q Consensus 39 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~-~~lg~~~~~~g~~~~A~~~~~~al~~ 106 (732)
-+..|..+++.|+|=+|-+.++.+-+..+.. .+.....+.+. ...+......|+...|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566778888899999999999998876654 12233334444 44555556678888888888888763
No 346
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=41.97 E-value=1.1e+02 Score=27.47 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcC-CcHHHHHhcccccEEecCCC
Q 004753 481 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFP 559 (732)
Q Consensus 481 K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~-~~~~~~~~~~~~Di~Ld~~~ 559 (732)
.++++.++-.++.+.... ++++.|.|. +......+...+...|+. +.+.+... ...........-|+++--+.
T Consensus 23 ~l~~~~l~~~~~~i~~a~--~I~i~G~G~-S~~~a~~~~~~l~~~g~~---~~~~~~~~~~~~~~~~~~~~~d~~i~iS~ 96 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRAD--HVIVVGMGF-SAAVAVFLGHGLNSLGIR---TTVLTEGGSTLTITLANLRPTDLMIGVSV 96 (187)
T ss_dssp TCCHHHHHHHHHHHHHCS--EEEEECCGG-GHHHHHHHHHHHHHTTCC---EEEECCCTHHHHHHHHTCCTTEEEEEECC
T ss_pred hCCHHHHHHHHHHHHhCC--EEEEEecCc-hHHHHHHHHHHHHhcCCC---EEEecCCchhHHHHHhcCCCCCEEEEEeC
Confidence 456677777888887753 888888764 445667778888888774 55554211 11223445566788765444
Q ss_pred CCCcccHHHhh----hcCCCeeecCCC
Q 004753 560 YAGTTTTCESL----YMGVPCVTMAGS 582 (732)
Q Consensus 560 ~~g~~t~~eal----~~GvPvvt~~g~ 582 (732)
.+....+++++ ..|+|||++.+.
T Consensus 97 sG~t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 97 WRYLRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp SSCCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 44444555544 569999987764
No 347
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=41.61 E-value=2.5e+02 Score=27.17 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC-CHHHHHHHHHHHHH
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAVS---PN-FEIAKNNMAIALTD 82 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~ 82 (732)
+-+..++.+..+.++|++...+.+++.+.+ +. ..+-...+..+|-+
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKN 78 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKN 78 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 455678888889999999999999998876 43 33444455555544
No 348
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=40.44 E-value=51 Score=27.70 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhHcCCcEEEEecCC--CCCHH--------HHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 484 PKVLQVWARILCAVPNSRLVVKCKP--FCCDS--------VRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 484 ~~~~~~~~~il~~~p~~~l~l~~~~--~~~~~--------~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
...++.++++|+..|+..+.|.|.. .++.. -.+.+.+.+.+.||+++||...|.
T Consensus 22 ~~~L~~ia~~l~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 85 (118)
T 2hqs_H 22 AQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSY 85 (118)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 3677888899999999999888732 12221 124577778889999999987655
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.30 E-value=1e+02 Score=27.55 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH---HHHHHHHCCCHHHHHHHHHHHHhh
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCN---MGVIYKNRGDLESAIACYERCLAV 65 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~---lg~~~~~~g~~~~A~~~~~~al~~ 65 (732)
-+..|..++..|+|=+|-+.++.+....+.. ...+.. .|....+.||...|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567888899999999999999998876544 222223 334556789999999999999874
No 350
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=40.28 E-value=2.7e+02 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKAALER--PM-YAEAYCNMGVIYK 47 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~lg~~~~ 47 (732)
+..++.+..+.++|++...+.+++.+.+ +. ..+-...+..+|.
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYK 56 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYK 56 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH
Confidence 4566777777788888888888877765 43 3444444454443
No 351
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.77 E-value=48 Score=26.02 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=9.4
Q ss_pred HHcCCHHHHHHHHHHHH
Q 004753 190 TVQGKMDAAAEMIEKAI 206 (732)
Q Consensus 190 ~~~g~~~eA~~~l~~al 206 (732)
-+.|++++|+.+|.+++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34566666666555543
No 352
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=39.06 E-value=61 Score=32.25 Aligned_cols=92 Identities=9% Similarity=-0.010 Sum_probs=54.2
Q ss_pred CCCCCcEEEecCCCCcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCC-HHHHHHHHHHHHHcCCCCCcEEEcCC----cC
Q 004753 466 LTNGFITFGSFNNLAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCC-DSVRHRFLSTLEQLGLESLRVDLLPL----IL 539 (732)
Q Consensus 466 ~~~~~~~f~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~-~~~~~~~~~~~~~~Gv~~~rv~~~~~----~~ 539 (732)
.+.|.+ +..-+...|. ++..++-+.+... -+++++.++...... +...+.+++.|+++|+. .|..+.- .+
T Consensus 24 ~~~g~l-~iiGGgedk~~~~~i~~~~v~lag-g~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~--~v~~L~i~~r~~a 99 (291)
T 3en0_A 24 SSQPAI-LIIGGAEDKVHGREILQTFWSRSG-GNDAIIGIIPSASREPLLIGERYQTIFSDMGVK--ELKVLDIRDRAQG 99 (291)
T ss_dssp CCSCCE-EEECSSCCSSSCCHHHHHHHHHTT-GGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS--EEEECCCCSGGGG
T ss_pred CCCceE-EEEECCCCccChHHHHHHHHHHcC-CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC--eeEEEEecCcccc
Confidence 344554 4444555563 4555555544443 245788877543322 34567888999999993 3333322 12
Q ss_pred CcHHHHHhcccccEEecCCCCCCccc
Q 004753 540 LNHDHMQAYSLMDISLDTFPYAGTTT 565 (732)
Q Consensus 540 ~~~~~~~~~~~~Di~Ld~~~~~g~~t 565 (732)
..++..+.+..+|++. ++||.|
T Consensus 100 ~~~~~~~~l~~ad~I~----v~GGnt 121 (291)
T 3en0_A 100 DDSGYRLFVEQCTGIF----MTGGDQ 121 (291)
T ss_dssp GCHHHHHHHHHCSEEE----ECCSCH
T ss_pred CCHHHHHHHhcCCEEE----ECCCCH
Confidence 3467778888899995 577765
No 353
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=38.79 E-value=48 Score=28.61 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=40.6
Q ss_pred CcCCH---HHHHHHHHHHhHcCCcEEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 480 AKITP---KVLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 480 ~K~~~---~~~~~~~~il~~~p~~~l~l~~~~~--~~~~--------~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
.++++ ..++.++++|+..|+..+.|.|... +... -.+.+++.+.+.||+++||...+.
T Consensus 39 a~L~~~~~~~L~~ia~~L~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 109 (134)
T 2aiz_P 39 YDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSY 109 (134)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred ceeCHHHHHHHHHHHHHHHHCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 34444 4677888899999999998887321 2221 124567778889999999988765
No 354
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.62 E-value=2.4e+02 Score=26.13 Aligned_cols=49 Identities=8% Similarity=0.103 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 161 LDKAVECYQMALSI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 161 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
..++...|.-.... ....+..|...|..+...|++.+|.+.|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44444444444332 23344455555555555555555555555555543
No 355
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=38.41 E-value=48 Score=31.01 Aligned_cols=35 Identities=9% Similarity=-0.066 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH
Q 004753 36 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 70 (732)
Q Consensus 36 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 70 (732)
....+.+|.+++..++|.+|.+.+.+|++..|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 44677888888888888888888888888877654
No 356
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=38.19 E-value=1.6e+02 Score=26.89 Aligned_cols=108 Identities=12% Similarity=0.218 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc---------------cccEE-ecCC-CCCC
Q 004753 500 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS---------------LMDIS-LDTF-PYAG 562 (732)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~---------------~~Di~-Ld~~-~~~g 562 (732)
.+++|+.+ ++..+..+...+.+.|.. +|..... ..+-+..+. ..|++ +|-. |-..
T Consensus 62 ~~ILiVdD---d~~~~~~l~~~L~~~g~~--~v~~a~~---~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~ 133 (206)
T 3mm4_A 62 KRVLVVDD---NFISRKVATGKLKKMGVS--EVEQCDS---GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMD 133 (206)
T ss_dssp CEEEEECS---CHHHHHHHHHHHHHTTCS--EEEEESS---HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSC
T ss_pred CEEEEEeC---CHHHHHHHHHHHHHcCCC--eeeeeCC---HHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCC
Confidence 45555533 346777788888887762 4544433 344444432 35665 4433 4445
Q ss_pred cccHHHhhh-------cCCCeeecCCCc-ccccchhHHhhhcCCCccccCCHHHHHHHHHHhh
Q 004753 563 TTTTCESLY-------MGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA 617 (732)
Q Consensus 563 ~~t~~eal~-------~GvPvvt~~g~~-~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~ 617 (732)
|..+++.+. ..+|||.+.+.. -... ..-....|..+++.+..++..+...++.
T Consensus 134 G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~--~~~~~~~Ga~~~l~KP~~~L~~~i~~~l 194 (206)
T 3mm4_A 134 GYEATREIRKVEKSYGVRTPIIAVSGHDPGSEE--ARETIQAGMDAFLDKSLNQLANVIREIE 194 (206)
T ss_dssp HHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHH--HHHHHHHTCSEEEETTCTTHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHH--HHHHHhCCCCEEEcCcHHHHHHHHHHHH
Confidence 666666664 579999888763 1111 1123356888888876664444444433
No 357
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=38.07 E-value=4.7e+02 Score=31.82 Aligned_cols=45 Identities=9% Similarity=0.026 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 47 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 47 (732)
+++..+-...+..-+.+++.++|++.++.+|++..++..+-..+.
T Consensus 1108 e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1108 ESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 344444444555556788999999999999999888877766554
No 358
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.02 E-value=53 Score=25.76 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=8.6
Q ss_pred HHcCCHHHHHHHHHHH
Q 004753 190 TVQGKMDAAAEMIEKA 205 (732)
Q Consensus 190 ~~~g~~~eA~~~l~~a 205 (732)
-+.|++++|+.+|.++
T Consensus 22 D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3455666665555544
No 359
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=37.14 E-value=48 Score=28.34 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=40.3
Q ss_pred CcCCH---HHHHHHHHHHhHcCCcEEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 480 AKITP---KVLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 480 ~K~~~---~~~~~~~~il~~~p~~~l~l~~~~~--~~~~--------~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
..+++ ..++.++.+|+..|+..+.|.|... +... -.+.+.+.+.+.||+++||...|.
T Consensus 33 ~~l~~~~~~~L~~ia~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 103 (129)
T 2kgw_A 33 ASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGL 103 (129)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCTTSCEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred cccCHHHHHHHHHHHHHHHhCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 34555 4677788889999999998887432 1211 123566777788999999987765
No 360
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=36.63 E-value=80 Score=24.10 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=10.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 004753 185 LGVVYTVQGKMDAAAEMIEKAIAAN 209 (732)
Q Consensus 185 la~~~~~~g~~~eA~~~l~~al~~~ 209 (732)
+|..+...|++++|..+|-+|+...
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 3333444444444444444444433
No 361
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=36.38 E-value=32 Score=26.61 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=35.5
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC-c--EEEcCCcCCcHHHHHhc-----ccccEEec
Q 004753 497 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-R--VDLLPLILLNHDHMQAY-----SLMDISLD 556 (732)
Q Consensus 497 ~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~-r--v~~~~~~~~~~~~~~~~-----~~~Di~Ld 556 (732)
.++-++.+.... .+.+-+.+.+.+.||+++ + +.|-|..-+....++-| .++|++||
T Consensus 19 ~~dl~f~I~~~t----~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL~ 82 (82)
T 3goe_A 19 SEDLRLSIPVDF----TVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD 82 (82)
T ss_dssp SCCEEEEEETTS----BHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC-
T ss_pred CCCeEEEecCCC----CHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeeeC
Confidence 356666665433 688888899999999998 4 45556544444455554 33555554
No 362
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=35.81 E-value=59 Score=27.10 Aligned_cols=65 Identities=6% Similarity=0.044 Sum_probs=41.2
Q ss_pred EEEEe-cCCCCCHH-HHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhc-CCCee
Q 004753 501 RLVVK-CKPFCCDS-VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYM-GVPCV 577 (732)
Q Consensus 501 ~l~l~-~~~~~~~~-~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~-GvPvv 577 (732)
+++++ +.|.++.. +..++++.+.+.|++ -.|.-.+.. +.-.....+|+++-|.+... -. |+||+
T Consensus 23 kIlvvC~sG~gTS~ll~~kl~~~~~~~gi~-~~V~~~~~~----~~~~~~~~~DlIist~~l~~--------~~~~ipvi 89 (113)
T 1tvm_A 23 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVN----EIETYMDGVHLICTTARVDR--------SFGDIPLV 89 (113)
T ss_dssp EEEEESCSCSSHHHHHHHHHHHHHHHTTCC-EEEEEECTT----TTTTSTTSCSEEEESSCCCC--------CSTTCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEecHH----HHhhccCCCCEEEECCcccc--------ccCCCCEE
Confidence 44555 45555444 589999999999995 234433321 22223456999999988762 12 68988
Q ss_pred e
Q 004753 578 T 578 (732)
Q Consensus 578 t 578 (732)
.
T Consensus 90 ~ 90 (113)
T 1tvm_A 90 H 90 (113)
T ss_dssp C
T ss_pred E
Confidence 5
No 363
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=35.01 E-value=1.5e+02 Score=23.69 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=33.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHHH
Q 004753 41 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 105 (732)
Q Consensus 41 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 105 (732)
..|..+++.|+|=+|-+.++..-...+. .+.....+.+....|......|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3455666667777777777777766643 222222333333334344445555 6666666654
No 364
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=34.54 E-value=3.3e+02 Score=26.39 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHH
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAVS--PN-FEIAKNNMAIALTD 82 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~ 82 (732)
.-+..++.+..+.++|++...+.+++.+.+ +. ..+-...+..+|-+
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKN 57 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKN 57 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH
Confidence 456678889999999999999999999977 44 33444455555544
No 365
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=34.50 E-value=63 Score=27.21 Aligned_cols=55 Identities=7% Similarity=0.036 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhHcCCcEEEEecCCC--CCHH--------HHHHHHHHHHHcCCC-CCcEEEcCCc
Q 004753 484 PKVLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLE-SLRVDLLPLI 538 (732)
Q Consensus 484 ~~~~~~~~~il~~~p~~~l~l~~~~~--~~~~--------~~~~~~~~~~~~Gv~-~~rv~~~~~~ 538 (732)
...++.++.+|+..|+.++.|.|... +... -...+.+.+.+.|++ ++||...|.-
T Consensus 33 ~~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~g~G 98 (123)
T 3oon_A 33 YKKIDLIAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFKGWG 98 (123)
T ss_dssp HHHHHHHHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEEEEc
Confidence 46788888999999999999887432 2221 124577778899998 8999887653
No 366
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=34.33 E-value=43 Score=29.40 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=38.9
Q ss_pred CcCCH---HHHHHHHHHHhHc--CCcEEEEecCCC--CCH--------HHHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 480 AKITP---KVLQVWARILCAV--PNSRLVVKCKPF--CCD--------SVRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 480 ~K~~~---~~~~~~~~il~~~--p~~~l~l~~~~~--~~~--------~~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
..+++ ..++.++.+|+.. |+..+.|.|... +.. .-...+.+.+.+.||+++||...|.
T Consensus 31 ~~l~~~~~~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 103 (148)
T 4erh_A 31 STLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISARGM 103 (148)
T ss_dssp CSBCHHHHHHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEEEE
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 45555 4566667778877 788888886321 111 1125677888889999999987664
No 367
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.28 E-value=54 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 004753 5 YYNLGVVYSELMQYDTALGCYEKA 28 (732)
Q Consensus 5 ~~~lg~~~~~~g~~~~A~~~~~~a 28 (732)
+-.++..+...|+|++||++.+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 444555666666666666665554
No 368
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=34.25 E-value=3.3e+02 Score=26.35 Aligned_cols=48 Identities=6% Similarity=0.149 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH
Q 004753 35 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTD 82 (732)
Q Consensus 35 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 82 (732)
.-+-+..+|.+..+.++|++...+.+++.+.++... +-...+..+|-+
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKN 78 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKN 78 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHh
Confidence 345677788899999999999999999998876543 334444555543
No 369
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=34.16 E-value=90 Score=23.82 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=15.1
Q ss_pred HhhhhHhhcCCHHHHHHHHHHHHHhCCCC
Q 004753 82 DLGTKVKLEGDINQGVAYYKKALYYNWHY 110 (732)
Q Consensus 82 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 110 (732)
.+|..+...|++++|..+|-+|+...|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 34444444555555555555555555443
No 370
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=34.03 E-value=2e+02 Score=29.24 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 178 FSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAA-----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g--~~~eA~~~l~~al~~-----~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
.|.++.+||.+-...- ....++..|.+++.. ......-|..+|..+++.+++.+|+.++..+-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 3445555555433221 122367777777764 234456677889999999999999999987754
No 371
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=33.37 E-value=14 Score=25.30 Aligned_cols=27 Identities=11% Similarity=0.400 Sum_probs=23.9
Q ss_pred CeEEEccCCCHHHHHHHHHhCCCcEEE
Q 004753 356 GIWRDIYGIDEKKVAAMVREDKIDILV 382 (732)
Q Consensus 356 ~~~~~~~~~~~~~~~~~i~~d~~Dilv 382 (732)
..|-++-|.+.++++..|.+|++|+-|
T Consensus 8 ~sWPELVG~~~~~A~~~I~~e~P~v~v 34 (45)
T 1hym_A 8 SSWPHLVGVGGSVAKAIIERQNPNVKA 34 (45)
T ss_dssp SBCCCCTTSCHHHHHHHHHHHCTTCEE
T ss_pred CcChhhcCCcHHHHHHHHHHHCCCCeE
Confidence 359999999999999999999999754
No 372
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=33.31 E-value=57 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhHhhcCCHHHHHHHHHHHH
Q 004753 72 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 104 (732)
Q Consensus 72 ~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 104 (732)
...+.+..+...+..+...|+|++|+++.+++.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566667777777777788888887776654
No 373
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=33.23 E-value=43 Score=31.47 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=54.9
Q ss_pred HHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccH
Q 004753 487 LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTT 566 (732)
Q Consensus 487 ~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~ 566 (732)
+..-++.+..+-+..++++|... ...+-+.+.+++.|-..-.=+|+|....... +..+..=|+.+=+-|-.-+..+
T Consensus 56 L~~A~~~i~~i~~~~iLfVgTk~---~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~-~~~f~~PdlliV~Dp~~e~~ai 131 (208)
T 1vi6_A 56 IRVAAKFLSRYEPSKILLVAARQ---YAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM-LSEYREPEVVFVNDPAIDKQAV 131 (208)
T ss_dssp HHHHHHHHTTSCGGGEEEEECSG---GGHHHHHHHHHHHCCEEEESSCCTTTTTCTT-STTCCCCSEEEESCTTTTHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeCCH---HHHHHHHHHHHHhCCeeecCEECCCcccChh-hHhhCCCCEEEEECCCcchhHH
Confidence 33334445555455666666431 3344555656666653211135555443332 3445566777666677888899
Q ss_pred HHhhhcCCCeeecCCC
Q 004753 567 CESLYMGVPCVTMAGS 582 (732)
Q Consensus 567 ~eal~~GvPvvt~~g~ 582 (732)
.||-.+|+|||++...
T Consensus 132 ~EA~~l~IPvIalvDT 147 (208)
T 1vi6_A 132 SEATAVGIPVVALCDS 147 (208)
T ss_dssp HHHHHTTCCEEEEECT
T ss_pred HHHHHhCCCEEEEeCC
Confidence 9999999999987653
No 374
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=32.85 E-value=1.1e+02 Score=32.54 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--C--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCC
Q 004753 7 NLGVVYSELMQYDTALGCYEKAALERP--M--------YAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNF 69 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~~~p--~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 69 (732)
.+-.+|++.++...+..+++..-...+ . ....++.+|.++...++|.+|.+.+..|++. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 455788999999999999876544332 1 2457889999999999999999999999998 7654
No 375
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=32.24 E-value=1.9e+02 Score=29.51 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 004753 177 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVL 222 (732)
Q Consensus 177 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~------~p~~~~~~~~La~~ 222 (732)
.....|..+|..+++.+++.+|++.+-++-.. ..++.++|..+-.+
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 345 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI 345 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 34455666777777777777777777666443 23345555544333
No 376
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=31.66 E-value=72 Score=28.03 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCC--CCCHH--------HHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 485 KVLQVWARILCAVPNSRLVVKCKP--FCCDS--------VRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 485 ~~~~~~~~il~~~p~~~l~l~~~~--~~~~~--------~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
..++.++++|+..|+..+.|.|.. .+... -...+.+.+.+.||+++||...|.
T Consensus 51 ~~L~~ia~~L~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 113 (149)
T 2k1s_A 51 NTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGL 113 (149)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 567778888999999888888732 12221 113566777788999999988765
No 377
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.47 E-value=1.1e+02 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=18.0
Q ss_pred HHhhhhHhhcCCHHHHHHHHHHHHHhCCC
Q 004753 81 TDLGTKVKLEGDINQGVAYYKKALYYNWH 109 (732)
Q Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 109 (732)
..+|..+...|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 44566666666677777766666655543
No 378
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=31.14 E-value=54 Score=28.63 Aligned_cols=38 Identities=5% Similarity=-0.088 Sum_probs=30.9
Q ss_pred cEEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 500 SRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 500 ~~l~l~~-~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
-.+||.+ .+..++...+++.+.+.+.|++.++|++++.
T Consensus 107 ~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~ii~~~~ 145 (151)
T 1e5p_A 107 NMIVVAGKGNALTPEENEILVQFAHEKKIPVENILNILA 145 (151)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEECGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCc
Confidence 4567776 3445778999999999999999999998765
No 379
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=30.75 E-value=62 Score=31.28 Aligned_cols=79 Identities=13% Similarity=0.163 Sum_probs=48.3
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeec
Q 004753 500 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM 579 (732)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~ 579 (732)
..++++|.. .....-+.+.+++.|-..-.=+|+|....+... ..+..=|+.+-+-|-.-+..+.||-.+|+|||++
T Consensus 71 ~~vlfVgTk---~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t-~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial 146 (252)
T 3u5c_A 71 EDVVAISSR---TFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT-RSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIAL 146 (252)
T ss_dssp GGEEEEECS---HHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS-TTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEE
T ss_pred CEEEEEeCC---cHHHHHHHHHHHHhCCceecCcccCCcccChhh-hhccCCceEEEeCCccchHHHHHHHHcCCCEEEE
Confidence 344455543 134445555566666422111355554333222 4556778877777788899999999999999987
Q ss_pred CCC
Q 004753 580 AGS 582 (732)
Q Consensus 580 ~g~ 582 (732)
...
T Consensus 147 ~DT 149 (252)
T 3u5c_A 147 TDL 149 (252)
T ss_dssp ECT
T ss_pred EcC
Confidence 644
No 380
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=30.74 E-value=1.2e+02 Score=28.18 Aligned_cols=33 Identities=12% Similarity=-0.133 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004753 3 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY 35 (732)
Q Consensus 3 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 35 (732)
.-+|.+|..++.+++|.+|.+.+.+|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 346899999999999999999999999998764
No 381
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=30.50 E-value=58 Score=29.40 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=22.4
Q ss_pred HHhcccccEEe---cCCCCCCcc--cHHHhhhcCCCeeecC
Q 004753 545 MQAYSLMDISL---DTFPYAGTT--TTCESLYMGVPCVTMA 580 (732)
Q Consensus 545 ~~~~~~~Di~L---d~~~~~g~~--t~~eal~~GvPvvt~~ 580 (732)
+..+..||+++ |...-.-|| -+-=|.+.|.|||.+.
T Consensus 76 ~~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 76 LTGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 34567799885 432222222 3445788899999983
No 382
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=29.54 E-value=2.7e+02 Score=31.43 Aligned_cols=119 Identities=9% Similarity=-0.034 Sum_probs=70.1
Q ss_pred CCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCeeecCCC--ccccc-chhHHhhhc--CCCcccc
Q 004753 529 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHN-VGVSLLTKV--GLKHLIA 603 (732)
Q Consensus 529 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~--~~~~r-~~~s~l~~~--gl~~~ia 603 (732)
.++++....- .+...++..+|+.+ .--+.+..|.+.+|.|||...-+ .+... -| +.-.. -+|+-++
T Consensus 597 ~~~~~~~~~~---~di~~ll~~aD~lI----TDySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg--~y~d~~~~~pg~~~ 667 (729)
T 3l7i_A 597 ENFAIDVSNY---NDVSELFLISDCLI----TDYSSVMFDYGILKRPQFFFAYDIDKYDKGLRG--FYMNYMEDLPGPIY 667 (729)
T ss_dssp TTTEEECTTC---SCHHHHHHTCSEEE----ESSCTHHHHHGGGCCCEEEECTTTTTTTSSCCS--BSSCTTSSSSSCEE
T ss_pred CCcEEeCCCC---cCHHHHHHHhCEEE----eechHHHHhHHhhCCCEEEecCCHHHHhhccCC--cccChhHhCCCCeE
Confidence 3566555442 34556667799997 23345899999999999987433 12110 11 11111 3577889
Q ss_pred CCHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004753 604 KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 658 (732)
Q Consensus 604 ~~~~~y~~~a~~l~~d~~~~~~~r~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~~ 658 (732)
.|.++.++.......+.......++..+++. .+.-|+..--+-++.++...-.
T Consensus 668 ~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~dg~as~ri~~~i~~~~~~ 720 (729)
T 3l7i_A 668 TEPYGLAKELKNLDKVQQQYQEKIDAFYDRF--CSVDNGKASQYIGDLIHKDIKE 720 (729)
T ss_dssp SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHH--STTCCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhhccchhHHHHHHHHHHHh--CCccCChHHHHHHHHHHhcCcC
Confidence 9999998877665544444444455555543 2334666666666666655543
No 383
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=29.47 E-value=1.1e+02 Score=32.29 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=51.3
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc--cccEEecCCCCCCcc-cH
Q 004753 490 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS--LMDISLDTFPYAGTT-TT 566 (732)
Q Consensus 490 ~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~--~~Di~Ld~~~~~g~~-t~ 566 (732)
..+.+.+.|+..|+-+.+. ++...+.+.+.+.+.|+...+ .+.+. ..++-.++. .+|+++-+.|..-|. .+
T Consensus 35 h~~~l~~~~~~~lvav~d~--~~~~~~~~a~~~~~~g~~~~~-~~~~~---~~~~~~ll~~~~vD~V~i~tp~~~h~~~~ 108 (444)
T 2ixa_A 35 HVENMARRDDVEIVAFADP--DPYMVGRAQEILKKNGKKPAK-VFGNG---NDDYKNMLKDKNIDAVFVSSPWEWHHEHG 108 (444)
T ss_dssp HHHHHHTCTTEEEEEEECS--CHHHHHHHHHHHHHTTCCCCE-EECSS---TTTHHHHTTCTTCCEEEECCCGGGHHHHH
T ss_pred HHHHHHhCCCcEEEEEEeC--CHHHHHHHHHHHHhcCCCCCc-eeccC---CCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 3455667899998866554 223344455555567873222 23211 113444443 589998888875554 67
Q ss_pred HHhhhcCCCeee
Q 004753 567 CESLYMGVPCVT 578 (732)
Q Consensus 567 ~eal~~GvPvvt 578 (732)
..||..|++|++
T Consensus 109 ~~al~aGkhV~~ 120 (444)
T 2ixa_A 109 VAAMKAGKIVGM 120 (444)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCeEEE
Confidence 889999999997
No 384
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=29.22 E-value=82 Score=27.23 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHcC-CcEEEEecCCC--CC--H------H----HHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 485 KVLQVWARILCAVP-NSRLVVKCKPF--CC--D------S----VRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 485 ~~~~~~~~il~~~p-~~~l~l~~~~~--~~--~------~----~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
..++.++++|+..| +..+.|.|... +. . . -...+.+.+.+.||+++||...|.
T Consensus 21 ~~L~~ia~~l~~~p~~~~i~I~GhtD~~g~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 88 (138)
T 3cyp_B 21 LYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSY 88 (138)
T ss_dssp HHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEecCCCCcccccchhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 45677788899999 88999886321 11 1 1 123577778888999999988765
No 385
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=29.17 E-value=21 Score=34.98 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=23.5
Q ss_pred ccccEEecCCCCCCcccHHHhhhcCCCeee
Q 004753 549 SLMDISLDTFPYAGTTTTCESLYMGVPCVT 578 (732)
Q Consensus 549 ~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt 578 (732)
..-|++||+| .|.|||+.+|+-+|.-+|.
T Consensus 211 ~~~~~vlD~f-~GsGtt~~~a~~~gr~~ig 239 (260)
T 1g60_A 211 NPNDLVLDCF-MGSGTTAIVAKKLGRNFIG 239 (260)
T ss_dssp CTTCEEEESS-CTTCHHHHHHHHTTCEEEE
T ss_pred CCCCEEEECC-CCCCHHHHHHHHcCCeEEE
Confidence 4569999985 3668999999999987774
No 386
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=29.09 E-value=98 Score=27.84 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCC--CCCH----H----HHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 485 KVLQVWARILCAVPNSRLVVKCKP--FCCD----S----VRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 485 ~~~~~~~~il~~~p~~~l~l~~~~--~~~~----~----~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
..++.++.+|+..|+..+.|.|.. .+.. . -.+.+.+.+.+.||+++||...|.
T Consensus 71 ~~L~~la~~l~~~~~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 133 (169)
T 3ldt_A 71 PGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGY 133 (169)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTTTEEECCT
T ss_pred HHHHHHHHHHHhCCCCeEEEEeEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 567788899999999998888632 1111 1 124577888899999999988765
No 387
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=28.79 E-value=27 Score=33.42 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCcCC--cHHHHHhc--ccccEEecCCCCCCcccHHHhh--hcCCCeeecCCCcccccc
Q 004753 515 RHRFLSTLEQLGLESLRVDLLPLILL--NHDHMQAY--SLMDISLDTFPYAGTTTTCESL--YMGVPCVTMAGSVHAHNV 588 (732)
Q Consensus 515 ~~~~~~~~~~~Gv~~~rv~~~~~~~~--~~~~~~~~--~~~Di~Ld~~~~~g~~t~~eal--~~GvPvvt~~g~~~~~r~ 588 (732)
++.+.+.+.+.|+..+++..-...+. ..+....+ ...|+++-|+|.+-. ..++.+ ..++++++ .|..
T Consensus 122 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~~~~~~a------IG~~ 194 (229)
T 3p9z_A 122 VSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTAISHAK-AFLHYFEFLENYTAIS------IGNT 194 (229)
T ss_dssp SSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECSHHHHH-HHHHHSCCCTTCEEEE------SSHH
T ss_pred hHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEECHHHHH-HHHHHhCcccCCEEEE------ECHH
Confidence 45666778889987676654433321 12233333 457888766553211 122222 23455655 3667
Q ss_pred hhHHhhhcCCCcccc--CCHHHHHHHHHHhhcC
Q 004753 589 GVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 619 (732)
Q Consensus 589 ~~s~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 619 (732)
++..++..|+.-.++ .|.++.++.+.+|+.+
T Consensus 195 Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l~~~ 227 (229)
T 3p9z_A 195 TALYLQEQGIPSYIAKKPSLEACLELALSLRIK 227 (229)
T ss_dssp HHHHHHHTTCCEEECSSSSHHHHHHHHHHTC--
T ss_pred HHHHHHHcCCCceeCCCCCHHHHHHHHHHHhhh
Confidence 888899999974454 5788888888877654
No 388
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=28.56 E-value=74 Score=33.43 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=50.4
Q ss_pred HHHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc----ccccEEecCCCCCCcc-
Q 004753 491 ARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY----SLMDISLDTFPYAGTT- 564 (732)
Q Consensus 491 ~~il~~~p~~~l~l-~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~----~~~Di~Ld~~~~~g~~- 564 (732)
...+...|+..|+- +.+. ..++.++.+++.|++..++ ..+.++.+..- ..+|+++-+.|..-|.
T Consensus 56 ~~~~~~~~~~~lva~v~d~-----~~~~a~~~a~~~g~~~~~~-----~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~ 125 (417)
T 3v5n_A 56 RIAARLDDHYELVAGALSS-----TPEKAEASGRELGLDPSRV-----YSDFKEMAIREAKLKNGIEAVAIVTPNHVHYA 125 (417)
T ss_dssp HHHHHHTSCEEEEEEECCS-----SHHHHHHHHHHHTCCGGGB-----CSCHHHHHHHHHHCTTCCSEEEECSCTTSHHH
T ss_pred HHHHhhCCCcEEEEEEeCC-----CHHHHHHHHHHcCCCcccc-----cCCHHHHHhcccccCCCCcEEEECCCcHHHHH
Confidence 44566778888763 4433 2345566677789853333 12245555431 3489888888776655
Q ss_pred cHHHhhhcCCCeee
Q 004753 565 TTCESLYMGVPCVT 578 (732)
Q Consensus 565 t~~eal~~GvPvvt 578 (732)
.+..||..|++|++
T Consensus 126 ~~~~al~aGkhVl~ 139 (417)
T 3v5n_A 126 AAKEFLKRGIHVIC 139 (417)
T ss_dssp HHHHHHTTTCEEEE
T ss_pred HHHHHHhCCCeEEE
Confidence 68889999999997
No 389
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=27.97 E-value=2.8e+02 Score=28.87 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 198 AAEMIEKAIAA-----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 198 A~~~l~~al~~-----~p~~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
++..|.+++.. ......-|..+|..+++.+++.+|+.++..+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 56667776654 234456678899999999999999999987754
No 390
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=27.76 E-value=73 Score=28.09 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=31.4
Q ss_pred cEEEEecC-CCCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 500 SRLVVKCK-PFCCDSVRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 500 ~~l~l~~~-~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
-.+||.+. +..++...+++.+.+...|++.++|++++.
T Consensus 114 ~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~ 152 (160)
T 2hlv_A 114 ELTELFVKGLNVEDEDLEKFWKLTEDKGIDKKNVVNFLE 152 (160)
T ss_dssp EEEEEEECSSSCCHHHHHHHHHHHHHTTCCGGGEEETTS
T ss_pred EEEEEEccCCCCCHHHHHHHHHHHHHcCCCHHHEEECCC
Confidence 45677764 556788999999999999999999998765
No 391
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=27.74 E-value=68 Score=32.60 Aligned_cols=76 Identities=8% Similarity=0.048 Sum_probs=52.6
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHHH
Q 004753 490 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCE 568 (732)
Q Consensus 490 ~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~e 568 (732)
....++..|++.|+-+++. ..++.++.+++.|++ ++ | .+.++.++. ..+|+++-+.|-.-|. .+.+
T Consensus 39 ~~~~~~~~~~~~lvav~d~-----~~~~a~~~a~~~g~~--~~-y----~d~~ell~~-~~iDaV~I~tP~~~H~~~~~~ 105 (350)
T 4had_A 39 VVPAIQDAENCVVTAIASR-----DLTRAREMADRFSVP--HA-F----GSYEEMLAS-DVIDAVYIPLPTSQHIEWSIK 105 (350)
T ss_dssp HHHHHHHCSSEEEEEEECS-----SHHHHHHHHHHHTCS--EE-E----SSHHHHHHC-SSCSEEEECSCGGGHHHHHHH
T ss_pred HHHHHHhCCCeEEEEEECC-----CHHHHHHHHHHcCCC--ee-e----CCHHHHhcC-CCCCEEEEeCCCchhHHHHHH
Confidence 3567788999999877654 235566667788984 22 2 224455443 4588887777765555 7899
Q ss_pred hhhcCCCeee
Q 004753 569 SLYMGVPCVT 578 (732)
Q Consensus 569 al~~GvPvvt 578 (732)
||..|++|++
T Consensus 106 al~aGkhVl~ 115 (350)
T 4had_A 106 AADAGKHVVC 115 (350)
T ss_dssp HHHTTCEEEE
T ss_pred HHhcCCEEEE
Confidence 9999999997
No 392
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=27.55 E-value=63 Score=28.35 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=30.7
Q ss_pred cEEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 500 SRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 500 ~~l~l~~-~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
-.+||.+ .+..++...+++.+.+.+.|++.++|++++.
T Consensus 112 ~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~~ 150 (156)
T 1bj7_A 112 KMTEGLAKGTSFTPEELEKYQQLNSERGVPNENIENLIK 150 (156)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHHTCCGGGEEECGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEecCC
Confidence 3677776 3445778999999999999999999998765
No 393
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.21 E-value=2.3e+02 Score=22.02 Aligned_cols=16 Identities=31% Similarity=0.684 Sum_probs=7.1
Q ss_pred HCCCHHHHHHHHHHHH
Q 004753 48 NRGDLESAIACYERCL 63 (732)
Q Consensus 48 ~~g~~~~A~~~~~~al 63 (732)
+.|++++|+.+|.+++
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 3444444444444443
No 394
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=25.89 E-value=1.2e+02 Score=26.93 Aligned_cols=46 Identities=7% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHhcccccEEecCCCCCCcccHH---HhhhcCCCeeecCCCcccccchh
Q 004753 545 MQAYSLMDISLDTFPYAGTTTTC---ESLYMGVPCVTMAGSVHAHNVGV 590 (732)
Q Consensus 545 ~~~~~~~Di~Ld~~~~~g~~t~~---eal~~GvPvvt~~g~~~~~r~~~ 590 (732)
+..+..||+++--......-|.. =|.+.|.|||.+.-......+++
T Consensus 63 ~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~ 111 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSA 111 (152)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCH
T ss_pred HHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHH
Confidence 45678899986533322222444 47788999999765433334443
No 395
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.71 E-value=2.6e+02 Score=29.00 Aligned_cols=30 Identities=7% Similarity=-0.089 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004753 178 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 207 (732)
Q Consensus 178 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 207 (732)
....|..+|-.+++.+++.+|+..+-++-.
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 344555566666666666666666655543
No 396
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=25.69 E-value=2.4e+02 Score=27.20 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc--ccccEEecCCCCCCccc----HHHhh---hcCCCeeecCCCcccc
Q 004753 516 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDISLDTFPYAGTTT----TCESL---YMGVPCVTMAGSVHAH 586 (732)
Q Consensus 516 ~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~--~~~Di~Ld~~~~~g~~t----~~eal---~~GvPvvt~~g~~~~~ 586 (732)
.-+...++..|.+ |+.+|..-+.+++.... ..+|++.-|+-.+.+.+ +++.| ..++||+. .|..+.
T Consensus 141 ~iva~~L~~~G~~---Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~v-GG~~~~- 215 (258)
T 2i2x_B 141 NIVTALLRANGYN---VVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFAC-GGGAVN- 215 (258)
T ss_dssp HHHHHHHHHTTCE---EEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEE-ESTTCC-
T ss_pred HHHHHHHHHCCCE---EEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEE-ECccCC-
Confidence 3444445566653 55554322234444333 34566655544333332 33333 23466554 333332
Q ss_pred cchhHHhhhcCCCccccCCHHHHHHHHHHhhcCHHHHHHHHH
Q 004753 587 NVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 628 (732)
Q Consensus 587 r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~ 628 (732)
..+-..+| .+..+.|..+-++.+.++........++|+
T Consensus 216 ---~~~~~~ig-ad~~~~da~~av~~~~~l~~~~~~~~~~~~ 253 (258)
T 2i2x_B 216 ---QDFVSQFA-LGVYGEEAADAPKIADAIIAGTTDVTELRE 253 (258)
T ss_dssp ---HHHHHTST-TEEECSSTTHHHHHHHHHHTTCCCHHHHHH
T ss_pred ---HHHHHHcC-CeEEECCHHHHHHHHHHHHcchhhHHHHHH
Confidence 23344567 456678888889999998876433344443
No 397
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=25.68 E-value=76 Score=27.80 Aligned_cols=38 Identities=11% Similarity=-0.074 Sum_probs=30.7
Q ss_pred cEEEEecC-CCCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 500 SRLVVKCK-PFCCDSVRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 500 ~~l~l~~~-~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
-.+||.+. +..++...+++.+.+...|++.++|++++.
T Consensus 113 ~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~ 151 (157)
T 1dzk_A 113 IMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIE 151 (157)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEESGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCc
Confidence 35677764 345778999999999999999999998765
No 398
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.65 E-value=9.8e+02 Score=29.11 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004753 90 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 122 (732)
Q Consensus 90 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 122 (732)
.-+.+++.+.|+++++..|++..++..+-..+.
T Consensus 1120 k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1120 KCELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 335688999999999999999888777666554
No 399
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=25.57 E-value=3.4e+02 Score=23.73 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=16.2
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCC
Q 004753 44 VIYKNRGDLESAIACYERCLAVSPNF 69 (732)
Q Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~p~~ 69 (732)
.-..-.|..++..+...+...-.+-.
T Consensus 15 K~~ildG~v~qGveii~k~~~ssni~ 40 (172)
T 1wy6_A 15 KKFLLDGYIDEGVKIVLEITKSSTKS 40 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCCcc
Confidence 33445677777777777776655543
No 400
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=25.52 E-value=1.7e+02 Score=30.37 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=37.2
Q ss_pred cCCCeeecCCCcccccchhHHhhhcCCCccccCCHHHHHHHHHHhhcC
Q 004753 572 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD 619 (732)
Q Consensus 572 ~GvPvvt~~g~~~~~r~~~s~l~~~gl~~~ia~~~~~y~~~a~~l~~d 619 (732)
..+|+|.+.+.+... -|-.+|...|++=..++|.++-++++++++.+
T Consensus 348 ~~~Pivvrl~G~n~~-~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 348 LKVPLVVRLEGTNVH-EAQNILTNSGLPITSAVDLEDAAKKAVASVTK 394 (395)
T ss_dssp CCSCEEEEEEETTHH-HHHHHHHHTCSCCEECSSHHHHHHHHHHTTC-
T ss_pred CCCeEEEEcCCCCHH-HHHHHHHHCCCceEeCCCHHHHHHHHHHHhhc
Confidence 689988866555433 37788988899877789999999999999865
No 401
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=25.51 E-value=1.1e+02 Score=30.98 Aligned_cols=76 Identities=9% Similarity=-0.026 Sum_probs=50.5
Q ss_pred HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHH
Q 004753 489 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTC 567 (732)
Q Consensus 489 ~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~ 567 (732)
..++.+.+.|+..++-+.+. ..++..+..++.|+.. + .+.++.+. -..+|+++.+.|-.-|. .+.
T Consensus 19 ~~~~~l~~~~~~~lvav~d~-----~~~~~~~~~~~~g~~~----~----~~~~~~l~-~~~~D~V~i~tp~~~h~~~~~ 84 (354)
T 3db2_A 19 VMADAYTKSEKLKLVTCYSR-----TEDKREKFGKRYNCAG----D----ATMEALLA-REDVEMVIITVPNDKHAEVIE 84 (354)
T ss_dssp HHHHHHTTCSSEEEEEEECS-----SHHHHHHHHHHHTCCC----C----SSHHHHHH-CSSCCEEEECSCTTSHHHHHH
T ss_pred HHHHHHHhCCCcEEEEEECC-----CHHHHHHHHHHcCCCC----c----CCHHHHhc-CCCCCEEEEeCChHHHHHHHH
Confidence 45677788899998866543 2344555556678741 1 22344443 24589988888876655 678
Q ss_pred HhhhcCCCeee
Q 004753 568 ESLYMGVPCVT 578 (732)
Q Consensus 568 eal~~GvPvvt 578 (732)
.|+..|.+|++
T Consensus 85 ~al~~gk~vl~ 95 (354)
T 3db2_A 85 QCARSGKHIYV 95 (354)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHcCCEEEE
Confidence 89999999997
No 402
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=25.43 E-value=90 Score=31.01 Aligned_cols=73 Identities=11% Similarity=-0.021 Sum_probs=50.4
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHHH
Q 004753 490 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCE 568 (732)
Q Consensus 490 ~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~e 568 (732)
+.+.|.+.|+..++-+.+. ..++..+..++.|+.. + .+.++.+. .+|+++-+.|..-+. .+.+
T Consensus 22 ~~~~l~~~~~~~l~av~d~-----~~~~~~~~a~~~~~~~----~----~~~~~ll~---~~D~V~i~tp~~~h~~~~~~ 85 (308)
T 3uuw_A 22 YLPILTKSERFEFVGAFTP-----NKVKREKICSDYRIMP----F----DSIESLAK---KCDCIFLHSSTETHYEIIKI 85 (308)
T ss_dssp THHHHTSCSSSEEEEEECS-----CHHHHHHHHHHHTCCB----C----SCHHHHHT---TCSEEEECCCGGGHHHHHHH
T ss_pred HHHHHHhCCCeEEEEEECC-----CHHHHHHHHHHcCCCC----c----CCHHHHHh---cCCEEEEeCCcHhHHHHHHH
Confidence 5677788899998865543 2345555566778741 1 22455555 799998888876655 5788
Q ss_pred hhhcCCCeee
Q 004753 569 SLYMGVPCVT 578 (732)
Q Consensus 569 al~~GvPvvt 578 (732)
|+..|++|++
T Consensus 86 al~~gk~vl~ 95 (308)
T 3uuw_A 86 LLNLGVHVYV 95 (308)
T ss_dssp HHHTTCEEEE
T ss_pred HHHCCCcEEE
Confidence 9999999986
No 403
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=25.43 E-value=1.4e+02 Score=28.54 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=51.9
Q ss_pred HHHHhHcC-CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC-cEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHH
Q 004753 491 ARILCAVP-NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 568 (732)
Q Consensus 491 ~~il~~~p-~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~-rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~e 568 (732)
++++..+- +..++++|.- .....-+.+.+...|...- .=+|+|....+.. ...+..=|+.+=+-|-.-+..+.|
T Consensus 57 ~~~i~~i~~~~~iLfVgtk---~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~-t~~~~~PdlliV~Dp~~e~~ai~E 132 (241)
T 2xzm_B 57 ARVIAAVQHPEDVMVVCSR---IYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQ-TLKYEEPRVLIVTDPRSDFQAIKE 132 (241)
T ss_dssp HHHHHHCSSGGGEEEECCS---HHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTT-CTTCCCCSEEEESCTTTTHHHHHH
T ss_pred HHHHHHHhCCCeEEEEECC---HHHHHHHHHHHHHhCCEEeccccccCCcccCcc-ccccCCCCEEEEECCCcchHHHHH
Confidence 34444442 3445555543 1334445555666665321 1146666543321 134556677766667788899999
Q ss_pred hhhcCCCeeecCCC
Q 004753 569 SLYMGVPCVTMAGS 582 (732)
Q Consensus 569 al~~GvPvvt~~g~ 582 (732)
|-.+|+|||++...
T Consensus 133 A~~l~IPvIalvDT 146 (241)
T 2xzm_B 133 ASYVNIPVIALCDS 146 (241)
T ss_dssp HTTTTCCEEECCCS
T ss_pred HHHhCCCEEEEecC
Confidence 99999999997654
No 404
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=25.34 E-value=2.8e+02 Score=31.82 Aligned_cols=110 Identities=8% Similarity=-0.032 Sum_probs=66.8
Q ss_pred CCcEEEecCCC--CcCCHH----HHHHHHHHHhH-------------cCCcEEEEecCCCCCHHHHHHHHHHHHHcC---
Q 004753 469 GFITFGSFNNL--AKITPK----VLQVWARILCA-------------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLG--- 526 (732)
Q Consensus 469 ~~~~f~~~~~~--~K~~~~----~~~~~~~il~~-------------~p~~~l~l~~~~~~~~~~~~~~~~~~~~~G--- 526 (732)
+.++.+-.-|+ +|...- .+..+.+|+.. .....+++.|+..........+.+.+...+
T Consensus 599 ~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~i 678 (879)
T 1ygp_A 599 DTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIV 678 (879)
T ss_dssp GCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHh
Confidence 34444444455 675444 33345566665 234666666665434445555555554442
Q ss_pred -----CCCC--cEEEcCCcCCcHHHHHhcccccEEecCC--CC-CCcccHHHhhhcCCCeeecC
Q 004753 527 -----LESL--RVDLLPLILLNHDHMQAYSLMDISLDTF--PY-AGTTTTCESLYMGVPCVTMA 580 (732)
Q Consensus 527 -----v~~~--rv~~~~~~~~~~~~~~~~~~~Di~Ld~~--~~-~g~~t~~eal~~GvPvvt~~ 580 (732)
| .+ +|+|++--. ..---.++..|||.+..+ |. ..||+-+=++.-|++.+..-
T Consensus 679 N~Dp~v-~~~LKVVFlenY~-VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtl 740 (879)
T 1ygp_A 679 NNDESI-EHLLKVVFVADYN-VSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTV 740 (879)
T ss_dssp TTCGGG-TTSEEEEEETTCC-HHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEES
T ss_pred ccChhh-CCceEEEEeCCCC-HHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecc
Confidence 3 35 799987632 222223568899998877 55 67999999999999988543
No 405
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.78 E-value=1e+02 Score=25.90 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 208 (732)
.++|+.++.+|++ .-..|+|++|+.+|..+++.
T Consensus 15 l~kAi~lv~~Ave---------------~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQ---------------EDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHH---------------HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------HHHccCHHHHHHHHHHHHHH
No 406
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.50 E-value=3.9e+02 Score=27.80 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHH
Q 004753 114 MYNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFSQSLNNL 185 (732)
Q Consensus 114 ~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 185 (732)
...|-.+++..| +|.-|+-.+-..-++.|... ...++.+|++++.. .......|..+
T Consensus 245 Qq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~g---------------rp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYl 309 (489)
T 4gq4_A 245 QQKLLWLLYDLGHLERYPMALGNLADLEELEPTPG---------------RPDPLTLYHKGIASAKTYYRDEHIYPYMYL 309 (489)
T ss_dssp HHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTT---------------SCCHHHHHHHHHHHHHHHSTTCCSHHHHHH
T ss_pred HHHHHHHHHhccchhhcchhhhcccCHhhcCCCCC---------------CCCHHHHHHHHHHHHHHhcccCcccceeec
Confidence 334444444444 45566666655555555431 11233455555442 23345567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 004753 186 GVVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVL 222 (732)
Q Consensus 186 a~~~~~~g~~~eA~~~l~~al~~------~p~~~~~~~~La~~ 222 (732)
|-.+.+.+++.+|+..+-++-.. ..++.++|..+-.+
T Consensus 310 gG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eI 352 (489)
T 4gq4_A 310 AGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 352 (489)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHH
T ss_pred chHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHH
Confidence 88888888888888888877553 34556776655444
No 407
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=24.33 E-value=2.7e+02 Score=22.12 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAI 233 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-------~p~~~~~~~~La~~~~~~g~~~eA~ 233 (732)
.++|+.++.+|++ .-..|+|++|+.+|..+++. .++...--.....+-..+.+.++=.
T Consensus 12 l~~Ai~lv~~Ave---------------~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK 76 (93)
T 1wfd_A 12 STAAVAVLKRAVE---------------LDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIK 76 (93)
T ss_dssp HHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------HHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 004753 234 DAYEQ 238 (732)
Q Consensus 234 ~~~~~ 238 (732)
.++..
T Consensus 77 ~~l~~ 81 (93)
T 1wfd_A 77 KYLDQ 81 (93)
T ss_dssp HHHHH
T ss_pred HHHhc
No 408
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=23.77 E-value=66 Score=33.53 Aligned_cols=77 Identities=18% Similarity=-0.014 Sum_probs=49.3
Q ss_pred HHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc----ccccEEecCCCCCCcc-c
Q 004753 492 RILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY----SLMDISLDTFPYAGTT-T 565 (732)
Q Consensus 492 ~il~~~p~~~l~l-~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~----~~~Di~Ld~~~~~g~~-t 565 (732)
..+...|+..|+- +.+. ..++.++.+++.|++..++ ..+.++.+..- ..+|+++-+.|-.-|. .
T Consensus 32 ~~~~~~~~~~lva~v~d~-----~~~~a~~~a~~~g~~~~~~-----~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~ 101 (398)
T 3dty_A 32 CAALRDNTFVLVAGAFDI-----DPIRGSAFGEQLGVDSERC-----YADYLSMFEQEARRADGIQAVSIATPNGTHYSI 101 (398)
T ss_dssp HHHHGGGSEEEEEEECCS-----SHHHHHHHHHHTTCCGGGB-----CSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHH
T ss_pred HHHhhCCCeEEEEEEeCC-----CHHHHHHHHHHhCCCccee-----eCCHHHHHhcccccCCCCCEEEECCCcHHHHHH
Confidence 4456678877774 4333 2355566677889853332 12245555432 2488887777765554 7
Q ss_pred HHHhhhcCCCeee
Q 004753 566 TCESLYMGVPCVT 578 (732)
Q Consensus 566 ~~eal~~GvPvvt 578 (732)
+..||.+|.+|++
T Consensus 102 ~~~al~aGkhVl~ 114 (398)
T 3dty_A 102 TKAALEAGLHVVC 114 (398)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHHCCCeEEE
Confidence 8899999999997
No 409
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.46 E-value=1.3e+02 Score=23.47 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004753 161 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 208 (732)
Q Consensus 161 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 208 (732)
.++|+.+..+|++ .-..|++++|+.+|..+++.
T Consensus 10 l~~A~~l~~~Av~---------------~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 10 LTKGIELVQKAID---------------LDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------HHHcCCHHHHHHHHHHHHHH
No 410
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=23.36 E-value=2.2e+02 Score=30.53 Aligned_cols=90 Identities=16% Similarity=0.036 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc
Q 004753 485 KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT 564 (732)
Q Consensus 485 ~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~ 564 (732)
-.+-+|.-+..-.-+-..+++..+ ..+.....+.+.+.+.|++++-|.++..-....+.+.....+|.+. |+|++
T Consensus 153 ~~~~~~~~~~ALaaGN~VVlKps~-~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~~v~~V~----fTGS~ 227 (490)
T 3ju8_A 153 GHLPNGHIVPALLAGNCVVFKPSE-LTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAHRGLDGLF----FTGSS 227 (490)
T ss_dssp THHHHHHHHHHHHHTCEEEEECCT-TCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTCTTCSEEE----EESCH
T ss_pred HHHHHHHHHHHHHcCCeEEEECCC-CCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhCCCcCEEE----EECcH
Confidence 344455433322223344555433 3445566778888899998887777754111122233334466665 78887
Q ss_pred cHHHhhh-----cCCCeeec
Q 004753 565 TTCESLY-----MGVPCVTM 579 (732)
Q Consensus 565 t~~eal~-----~GvPvvt~ 579 (732)
.+-..++ ...||+++
T Consensus 228 ~~g~~i~~~aa~~~~~v~~l 247 (490)
T 3ju8_A 228 RTGNLLHSQFGGQPQKILAL 247 (490)
T ss_dssp HHHHHHHHHTTTCTTSEEEE
T ss_pred HHHHHHHHHhhccCCCcEEe
Confidence 6655443 35788664
No 411
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=23.00 E-value=5.2e+02 Score=24.96 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHH-CCCHHHHHHHH
Q 004753 4 AYYNLGVVYSELMQYDTALGCYEKAALER---PM-YAEAYCNMGVIYKN-RGDLESAIACY 59 (732)
Q Consensus 4 a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~-~g~~~~A~~~~ 59 (732)
-+..++....+.++|++...+.+++.+.+ +. ..+-...+..+|.+ .|....+...+
T Consensus 30 ~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRii 90 (260)
T 2npm_A 30 SNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRII 90 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHH
Confidence 35568888889999999999999999976 43 45556666666654 23333333333
No 412
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=22.89 E-value=1e+02 Score=27.56 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCC--CCCHH--------HHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 485 KVLQVWARILCAVPNSRLVVKCKP--FCCDS--------VRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 485 ~~~~~~~~il~~~p~~~l~l~~~~--~~~~~--------~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
..++.++.+|+..|...+.|.|.. .++.. -...+.+.+.+.||+++||...|.
T Consensus 32 ~~L~~la~~L~~~~~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~ 94 (164)
T 1r1m_A 32 DNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGL 94 (164)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhCCCcEEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 456777788888888888887632 22221 113567778889999999988765
No 413
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.86 E-value=1e+02 Score=24.21 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=10.0
Q ss_pred HHCCCHHHHHHHHHHHHh
Q 004753 47 KNRGDLESAIACYERCLA 64 (732)
Q Consensus 47 ~~~g~~~~A~~~~~~al~ 64 (732)
-..|++++|+.+|.++++
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 345556666655555554
No 414
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.86 E-value=5e+02 Score=24.68 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTD 82 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 82 (732)
+-+..+|.+..+.++|++...+.+++.+.++... +-...+..+|-+
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKN 55 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKN 55 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHh
Confidence 4456677777888888888888888877766532 333444444433
No 415
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=22.71 E-value=84 Score=28.61 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=39.4
Q ss_pred cccEEecCCCCCCcc--cHHHhhhcCCCeeecCCCcccccchhHHhhhcCCCc-cccCCHHHHHHHHHHhh
Q 004753 550 LMDISLDTFPYAGTT--TTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEYVQLALQLA 617 (732)
Q Consensus 550 ~~Di~Ld~~~~~g~~--t~~eal~~GvPvvt~~g~~~~~r~~~s~l~~~gl~~-~ia~~~~~y~~~a~~l~ 617 (732)
.+|.++- .|=+.|| ++.||+..|.||+.+.+. .+...++..-..+. .+++|+++.++...++.
T Consensus 107 ~sda~Iv-lpGg~GTL~E~~~al~~~kpV~~l~~~----~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~ 172 (176)
T 2iz6_A 107 SSNVLVA-VGMGPGTAAEVALALKAKKPVVLLGTQ----PEAEKFFTSLDAGLVHVAADVAGAIAAVKQLL 172 (176)
T ss_dssp GCSEEEE-ESCCHHHHHHHHHHHHTTCCEEEESCC----HHHHHHHHHHCTTTEEEESSHHHHHHHHHHHH
T ss_pred hCCEEEE-ecCCccHHHHHHHHHHhCCcEEEEcCc----ccccccCChhhcCeEEEcCCHHHHHHHHHHHH
Confidence 3555542 2323355 788899999999999882 14444555433333 34688888887776654
No 416
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=22.64 E-value=68 Score=33.94 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=49.5
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHHH
Q 004753 490 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCE 568 (732)
Q Consensus 490 ~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~e 568 (732)
..+.+.+.|+..++-+.+. ..++..+..++.|+....+... .+.++.+.. ..+|+++.+.|-.-|. .+.+
T Consensus 99 ~~~~l~~~~~~~lvav~d~-----~~~~~~~~a~~~g~~~~~~~~~---~~~~~ll~~-~~vD~V~iatp~~~h~~~~~~ 169 (433)
T 1h6d_A 99 ILPGFAGCQHSRIEALVSG-----NAEKAKIVAAEYGVDPRKIYDY---SNFDKIAKD-PKIDAVYIILPNSLHAEFAIR 169 (433)
T ss_dssp HHHHTTTCSSEEEEEEECS-----CHHHHHHHHHHTTCCGGGEECS---SSGGGGGGC-TTCCEEEECSCGGGHHHHHHH
T ss_pred HHHHHhhCCCcEEEEEEcC-----CHHHHHHHHHHhCCCccccccc---CCHHHHhcC-CCCCEEEEcCCchhHHHHHHH
Confidence 4555667888888766553 1234455566778742223221 112333221 2589998888876655 6788
Q ss_pred hhhcCCCeee
Q 004753 569 SLYMGVPCVT 578 (732)
Q Consensus 569 al~~GvPvvt 578 (732)
||..|++|++
T Consensus 170 al~aGk~Vl~ 179 (433)
T 1h6d_A 170 AFKAGKHVMC 179 (433)
T ss_dssp HHHTTCEEEE
T ss_pred HHHCCCcEEE
Confidence 9999999997
No 417
>2oyy_A Hexameric cytochrome; all helical, unknown function; HET: HEM; 2.50A {Silicibacter pomeroyi}
Probab=22.51 E-value=1e+02 Score=23.19 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCCccccCCHHHHHHHHHHhhc--------CHHHHHHHHHHHHHHhh
Q 004753 597 GLKHLIAKNEDEYVQLALQLAS--------DVTALANLRMSLRDLMS 635 (732)
Q Consensus 597 gl~~~ia~~~~~y~~~a~~l~~--------d~~~~~~~r~~lr~~~~ 635 (732)
-||-|+..++++=-++|++|++ |. .+|.++|....
T Consensus 5 WLptL~T~TPeeG~~LAvklaR~~vk~tQPd~----evr~~lR~~Ya 47 (76)
T 2oyy_A 5 WLPTLVTATPQEGFDLAVKLSRIAVKKTQPDA----QVRDTLRAVYE 47 (76)
T ss_dssp CCCCSCCSSHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHT
T ss_pred hhhhhhcCChHHHHHHHHHHHHHHHhccCCCH----HHHHHHhHHhh
Confidence 5788999999999999998886 44 45566665543
No 418
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=22.38 E-value=32 Score=34.88 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=24.1
Q ss_pred ccccEEecCCCCCCcccHHHhhhcCCCeeec
Q 004753 549 SLMDISLDTFPYAGTTTTCESLYMGVPCVTM 579 (732)
Q Consensus 549 ~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~ 579 (732)
..-|++|||| .|.|||...|+-+|.-.|..
T Consensus 251 ~~~~~VlDpF-~GsGtt~~aa~~~gr~~ig~ 280 (323)
T 1boo_A 251 EPDDLVVDIF-GGSNTTGLVAERESRKWISF 280 (323)
T ss_dssp CTTCEEEETT-CTTCHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEECC-CCCCHHHHHHHHcCCCEEEE
Confidence 4579999995 36689999999999877753
No 419
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=22.24 E-value=2.8e+02 Score=21.50 Aligned_cols=11 Identities=18% Similarity=-0.257 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 004753 20 TALGCYEKAAL 30 (732)
Q Consensus 20 ~A~~~~~~al~ 30 (732)
+|+.+..+|++
T Consensus 10 ~Ai~lv~~Ave 20 (83)
T 2v6y_A 10 MARKYAILAVK 20 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 420
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=22.07 E-value=53 Score=32.37 Aligned_cols=31 Identities=16% Similarity=-0.044 Sum_probs=22.6
Q ss_pred cccccEEecCCCCC-CcccHHHhhhcCCCeee
Q 004753 548 YSLMDISLDTFPYA-GTTTTCESLYMGVPCVT 578 (732)
Q Consensus 548 ~~~~Di~Ld~~~~~-g~~t~~eal~~GvPvvt 578 (732)
+..+||++|-.+-. .-..+..++..|+|||+
T Consensus 71 l~~~DVVIDfT~p~a~~~~~~~al~~G~~vVi 102 (272)
T 4f3y_A 71 CAEADYLIDFTLPEGTLVHLDAALRHDVKLVI 102 (272)
T ss_dssp HHHCSEEEECSCHHHHHHHHHHHHHHTCEEEE
T ss_pred hcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEE
Confidence 34699999966433 23356678999999997
No 421
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.94 E-value=4e+02 Score=27.41 Aligned_cols=61 Identities=7% Similarity=0.067 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---C--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004753 181 SLNNLGVVYTVQGKMDAAAEMIEKAIAA---N--PT---YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 241 (732)
Q Consensus 181 ~~~~la~~~~~~g~~~eA~~~l~~al~~---~--p~---~~~~~~~La~~~~~~g~~~eA~~~~~~al~ 241 (732)
+...++..|...|+.++|..+++++-.. . .+ ....+...+..|...+++.++....-.++.
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4455666677777777777777766432 1 11 123445566667777777776665555553
No 422
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=21.59 E-value=1e+02 Score=27.18 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=30.1
Q ss_pred EEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 004753 501 RLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPL 537 (732)
Q Consensus 501 ~l~l~~-~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~ 537 (732)
.+||.+ .+..++...+++.+.+.+.|++.++|++++.
T Consensus 110 ~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~ 147 (160)
T 3sao_A 110 MMRLYSRSREVSPTAMAIFRKLARERNYTDEMVAVLPS 147 (160)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHHTTTCCGGGEEECCC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCC
Confidence 456665 4445778999999999999999999998765
No 423
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.52 E-value=83 Score=24.36 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 004753 7 NLGVVYSELMQYDTALGCYEKAAL 30 (732)
Q Consensus 7 ~lg~~~~~~g~~~~A~~~~~~al~ 30 (732)
.+|.-|...|+|+.|+.+|+.+++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 345555555555555555555443
No 424
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.33 E-value=5.3e+02 Score=24.44 Aligned_cols=46 Identities=7% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTD 82 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 82 (732)
+-+..++.+..+.++|++...+.+++.+.++.. .+-...+..+|-+
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKn 52 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKN 52 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 455678889999999999999999999987653 3344445555544
No 425
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=21.02 E-value=1.3e+02 Score=30.25 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=48.6
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHHH
Q 004753 490 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCE 568 (732)
Q Consensus 490 ~~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~e 568 (732)
.++.|.+.|+..++-+.+.. .++..+..++.|+. ++ ..+.++.+.. ..+|+++.+.|-..+. .+.+
T Consensus 20 ~~~~l~~~~~~~l~av~d~~-----~~~~~~~~~~~~~~--~~-----~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~ 86 (330)
T 3e9m_A 20 FVAGLRESAQAEVRGIASRR-----LENAQKMAKELAIP--VA-----YGSYEELCKD-ETIDIIYIPTYNQGHYSAAKL 86 (330)
T ss_dssp HHHHHHHSSSEEEEEEBCSS-----SHHHHHHHHHTTCC--CC-----BSSHHHHHHC-TTCSEEEECCCGGGHHHHHHH
T ss_pred HHHHHHhCCCcEEEEEEeCC-----HHHHHHHHHHcCCC--ce-----eCCHHHHhcC-CCCCEEEEcCCCHHHHHHHHH
Confidence 45667778998888655431 24455556677873 11 1223344331 3689888877776555 6788
Q ss_pred hhhcCCCeee
Q 004753 569 SLYMGVPCVT 578 (732)
Q Consensus 569 al~~GvPvvt 578 (732)
|+..|.+|++
T Consensus 87 al~~gk~vl~ 96 (330)
T 3e9m_A 87 ALSQGKPVLL 96 (330)
T ss_dssp HHHTTCCEEE
T ss_pred HHHCCCeEEE
Confidence 9999999996
No 426
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=20.77 E-value=2.1e+02 Score=29.07 Aligned_cols=78 Identities=8% Similarity=-0.005 Sum_probs=48.7
Q ss_pred HHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHHHh
Q 004753 491 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCES 569 (732)
Q Consensus 491 ~~il~~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~ea 569 (732)
.+.+...|+..++-+.+. ..++.++..++.|+... +... .+.++.+.. ..+|+++.+.|-..+. .+.+|
T Consensus 22 ~~~l~~~~~~~lv~v~d~-----~~~~~~~~a~~~~~~~~-~~~~---~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~a 91 (362)
T 1ydw_A 22 SRAIHLAPNATISGVASR-----SLEKAKAFATANNYPES-TKIH---GSYESLLED-PEIDALYVPLPTSLHVEWAIKA 91 (362)
T ss_dssp HHHHHHCTTEEEEEEECS-----SHHHHHHHHHHTTCCTT-CEEE---SSHHHHHHC-TTCCEEEECCCGGGHHHHHHHH
T ss_pred HHHHhhCCCcEEEEEEcC-----CHHHHHHHHHHhCCCCC-Ceee---CCHHHHhcC-CCCCEEEEcCChHHHHHHHHHH
Confidence 445667899888766553 12445556677787321 2221 123333321 2489998888876654 67789
Q ss_pred hhcCCCeee
Q 004753 570 LYMGVPCVT 578 (732)
Q Consensus 570 l~~GvPvvt 578 (732)
|..|++|++
T Consensus 92 l~aGk~V~~ 100 (362)
T 1ydw_A 92 AEKGKHILL 100 (362)
T ss_dssp HTTTCEEEE
T ss_pred HHCCCeEEE
Confidence 999999997
No 427
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.65 E-value=1.2e+02 Score=24.45 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004753 184 NLGVVYTVQGKMDAAAEMIEKAIAANP 210 (732)
Q Consensus 184 ~la~~~~~~g~~~eA~~~l~~al~~~p 210 (732)
.+|..+...|+++.|+.+|-+|+...|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 345555555555555555555555443
No 428
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.42 E-value=4.7e+02 Score=23.49 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc------ccccEEecCCCCCCcccHHHhhhcCCCeeecCCC
Q 004753 509 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY------SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS 582 (732)
Q Consensus 509 ~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~------~~~Di~Ld~~~~~g~~t~~eal~~GvPvvt~~g~ 582 (732)
..+.+..+.....++++||+-+ +...+-.-. .+.+..| +.++|++-----.++....=|-..-+|||..+-.
T Consensus 22 ~SD~~v~~~a~~~l~~~gi~~e-v~V~saHR~-p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~t~~PVIgVPv~ 99 (173)
T 4grd_A 22 SSDWDVMKHAVAILQEFGVPYE-AKVVSAHRM-PDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAKTTVPVLGVPVA 99 (173)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEE-EEECCTTTS-HHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHHCCSCEEEEEEC
T ss_pred HhHHHHHHHHHHHHHHcCCCEE-EEEEccccC-HHHHHHHHHHHHhcCCeEEEEeccccccchhhheecCCCCEEEEEcC
Confidence 3456778888889999999643 444444322 2333333 4567887555555666555566678899987733
Q ss_pred cccccchhHHhhhcCCCc
Q 004753 583 VHAHNVGVSLLTKVGLKH 600 (732)
Q Consensus 583 ~~~~r~~~s~l~~~gl~~ 600 (732)
.-...--.++|.-+.+|.
T Consensus 100 ~~~l~G~dsLlSivqMP~ 117 (173)
T 4grd_A 100 SKYLKGVDSLHSIVQMPK 117 (173)
T ss_dssp CTTTTTHHHHHHHHCCCT
T ss_pred CCCCCchhHHHHHHhCCC
Confidence 222222446777776664
No 429
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.40 E-value=1.4e+02 Score=29.65 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=47.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCCee
Q 004753 498 PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCV 577 (732)
Q Consensus 498 p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~t~~eal~~GvPvv 577 (732)
|+- ++++|.. ....+-+.+.+++.|-..-.=+|+|....+.. ...+..=|+.+-+-|-.-+..+.||-.+|+|||
T Consensus 75 ~~~-ILfVgTk---~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~-t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtI 149 (305)
T 3iz6_A 75 PQD-IIVQSAR---PYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL-QTSFSEPRLLILTDPRTDHQPIKESALGNIPTI 149 (305)
T ss_dssp SCC-EEEECCS---HHHHHHHHHHHHHHTCEEECSCCCTTTTTTTT-TSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEE
T ss_pred CCe-EEEEeCc---HHHHHHHHHHHHHhCCccccCcccCCcccCcc-cccccCCceeEEeCcccchHHHHHHHHcCCCEE
Confidence 444 4455543 13344555555555642211135555433221 233566788777777888999999999999999
Q ss_pred ecCCC
Q 004753 578 TMAGS 582 (732)
Q Consensus 578 t~~g~ 582 (732)
++...
T Consensus 150 ALvDT 154 (305)
T 3iz6_A 150 AFCDT 154 (305)
T ss_dssp EEECT
T ss_pred EEEcC
Confidence 87643
No 430
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=20.24 E-value=1.3e+02 Score=30.28 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=48.8
Q ss_pred HHHHHh-HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEEecCCCCCCcc-cHH
Q 004753 490 WARILC-AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTC 567 (732)
Q Consensus 490 ~~~il~-~~p~~~l~l~~~~~~~~~~~~~~~~~~~~~Gv~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~g~~-t~~ 567 (732)
.++.+. ..|+..++-+.+. ..++..+..++.|+. .++ + .+.++.+.. ..+|+++.+.|-.-+. .+.
T Consensus 17 ~~~~l~~~~~~~~l~av~d~-----~~~~~~~~~~~~g~~-~~~-~----~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~ 84 (344)
T 3mz0_A 17 HINRITNKLSGAEIVAVTDV-----NQEAAQKVVEQYQLN-ATV-Y----PNDDSLLAD-ENVDAVLVTSWGPAHESSVL 84 (344)
T ss_dssp HHHHHHHTCSSEEEEEEECS-----SHHHHHHHHHHTTCC-CEE-E----SSHHHHHHC-TTCCEEEECSCGGGHHHHHH
T ss_pred HHHHHHhhCCCcEEEEEEcC-----CHHHHHHHHHHhCCC-Cee-e----CCHHHHhcC-CCCCEEEECCCchhHHHHHH
Confidence 445555 7899998866543 234555666777862 121 1 123344332 3489888877775554 678
Q ss_pred HhhhcCCCeee
Q 004753 568 ESLYMGVPCVT 578 (732)
Q Consensus 568 eal~~GvPvvt 578 (732)
+|+..|++|++
T Consensus 85 ~al~~Gk~vl~ 95 (344)
T 3mz0_A 85 KAIKAQKYVFC 95 (344)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHCCCcEEE
Confidence 89999999997
No 431
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=20.21 E-value=5.8e+02 Score=24.43 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH
Q 004753 37 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTD 82 (732)
Q Consensus 37 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 82 (732)
.-+..+|.+..+.++|++...+.+++.+.++... +-...+..+|-+
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKN 51 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKN 51 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHh
Confidence 3456788999999999999999999999877543 334444555543
Done!