Query 004754
Match_columns 732
No_of_seqs 308 out of 1663
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.4E-46 1.8E-50 408.9 46.6 444 3-729 9-488 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.3E-34 1.1E-38 310.0 28.9 183 3-190 25-212 (451)
3 3o7q_A L-fucose-proton symport 100.0 4.7E-31 1.6E-35 284.7 41.8 175 3-180 23-225 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 7.1E-28 2.4E-32 265.1 31.5 171 10-184 17-196 (491)
5 2gfp_A EMRD, multidrug resista 100.0 4E-28 1.4E-32 257.9 24.0 178 8-189 2-179 (375)
6 2xut_A Proton/peptide symporte 99.9 4.8E-24 1.6E-28 236.9 24.6 167 11-181 17-195 (524)
7 2cfq_A Lactose permease; trans 99.9 1.1E-24 3.6E-29 237.7 16.0 146 558-712 262-408 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 6.2E-11 2.1E-15 127.6 20.2 170 10-183 256-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 1.1E-10 3.6E-15 125.6 19.5 169 525-709 41-236 (438)
10 2gfp_A EMRD, multidrug resista 99.2 3.9E-11 1.3E-15 126.9 12.8 167 525-710 15-181 (375)
11 4gc0_A D-xylose-proton symport 99.2 7.4E-10 2.5E-14 121.2 22.8 180 14-201 285-473 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.2 2.5E-10 8.7E-15 125.2 19.1 168 525-705 28-198 (491)
13 2cfq_A Lactose permease; trans 99.2 1.4E-10 4.8E-15 126.1 15.3 146 42-189 258-404 (417)
14 2xut_A Proton/peptide symporte 99.1 9E-10 3.1E-14 122.0 18.6 166 525-702 27-197 (524)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.4e-46 Score=408.89 Aligned_cols=444 Identities=28% Similarity=0.509 Sum_probs=350.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHHHHHHHHHhHHHhhhhhCChHHH
Q 004754 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLET------EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPML 76 (732)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~I~~dlgl~~------s~s~igll~Sif~IG~~Ig~~~~g~LsDrfGrR~vL 76 (732)
..+.++++++++.++.|+|.+.++.++|.+.++++.+. +..+.|++.+++.+|++++++++|+++||+|||+++
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34667778889999999999999999999999885421 345789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhHHH
Q 004754 77 IVSSVLYFIGGLVML------------------WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQ 138 (732)
Q Consensus 77 ligllL~aIgsll~a------------------~a~s~~~LiI~R~L~G~g~G~~~~~~~alI~E~fP~~~Rg~~~~l~~ 138 (732)
+++.+++.+++++++ +++|+++++++|+++|++.|+..+..++++.|+.|+++|++..++.+
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~ 168 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ 168 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence 999999999999998 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh------ccchhHHHHHHHHHHHHHHHHHHHhhccCCchhhhhccccHHHHHHHHHhhcCc
Q 004754 139 FTGCVGMFLAYCMVFGMSLM------TAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGRE 212 (732)
Q Consensus 139 ~~~~~G~aIg~l~~l~~~l~------~~~~Wr~~~~i~~~l~~i~~~l~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~ 212 (732)
.+..+|.+++.......... ....||+.+.+..++.++.+ +..+++||||+|+..+++.+++++.+++....+
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 99999999996665544322 23478999888888777755 457889999999999999999998888765433
Q ss_pred ChhhHHHHHHhhhccccccchhhhhhccccccccccccchhhhhhcccCCcCCcccccccccccccccccCCCCCcCCcc
Q 004754 213 DVAGEMALLVEGLGVGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPL 292 (732)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 292 (732)
....+.. +.++.
T Consensus 248 ~~~~~~~--------------------------------~~~~~------------------------------------ 259 (491)
T 4gc0_A 248 LATQAVQ--------------------------------EIKHS------------------------------------ 259 (491)
T ss_dssp HHHHHHH--------------------------------HHHHH------------------------------------
T ss_pred hhHHHHH--------------------------------HHHHH------------------------------------
Confidence 1110000 00000
Q ss_pred hhccccccccCCCCCCCccccccccccccccCCCCCCCcchhhhhhhccCCCCCCcCCCCCCCCCcCCcccccccccccc
Q 004754 293 VTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDSDDNLQSPLISRQTTSIEK 372 (732)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (732)
.+++
T Consensus 260 ----------------------------------------~~~~------------------------------------ 263 (491)
T 4gc0_A 260 ----------------------------------------LDHG------------------------------------ 263 (491)
T ss_dssp ----------------------------------------HHHH------------------------------------
T ss_pred ----------------------------------------HHhh------------------------------------
Confidence 0000
Q ss_pred cCCCCCCCCCcccccCccccCCCCCCcccccCCcccchhhhhhhhccCCcccCCcccccccccCCCCCCccceeeccccc
Q 004754 373 DMVPPAHGTLSSMRHGSQVQGNAGEPVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGED 452 (732)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~s~~~~~ 452 (732)
T Consensus 264 -------------------------------------------------------------------------------- 263 (491)
T 4gc0_A 264 -------------------------------------------------------------------------------- 263 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhccCCCCcccCCCCcccccCCChhhhcccchhhHHHHHHHHHHHHHhhhhHHHHHh
Q 004754 453 VPVGGEVVQAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYY 532 (732)
Q Consensus 453 ~~~g~~~~~~~~l~~~~~~~~~~l~~e~p~~~~~~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 532 (732)
.+......++ ..++..+......++++.+.+.+.+|
T Consensus 264 -----------------------------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (491)
T 4gc0_A 264 -----------------------------------------RKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYY 299 (491)
T ss_dssp -----------------------------------------HHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------------------------------------hhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhc
Confidence 0000111111 13456677777888888899999999
Q ss_pred HHHHHHHhcccchhcccCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHhhHHHHHHHHHHHHHHHHhhccc
Q 004754 533 TPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGS 612 (732)
Q Consensus 533 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~i~~~~~l~~~~i~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 612 (732)
.|.+.+..+... ........+.++..+++.+++++++||+|||+.++.+..++.++++.+.......
T Consensus 300 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--- 366 (491)
T 4gc0_A 300 APEVFKTLGAST----------DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--- 366 (491)
T ss_dssp HHHHHHHSSCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred chHHHHhcCCCc----------cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc---
Confidence 999998866442 3455556677888999999999999999999999998888888877766543322
Q ss_pred chhhHHHHHHHHHHHHHHhhcccchhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh------hchhHHH
Q 004754 613 VVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNS------VGLAGVF 686 (732)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~gi~~~~~~ig~~i~~~~~~~l~~~------~g~~~~f 686 (732)
.+....++.++++..++..+++++++++++|++|++.|+++.|+++.+.++++++++.+++.+.+. .+...+|
T Consensus 367 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 367 -APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred -cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 234455666777788888889999999999999999999999999999999999999999877543 4566789
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCChhhhhhhhhccCCcchhh
Q 004754 687 GMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAVGASQADAA 729 (732)
Q Consensus 687 ~~~~~~~~i~~i~~~~~~~et~~~~~~~~~~~~~~~~~~~~~~ 729 (732)
++++++++++.+++++++|||||+++||+|+.|+++.++.++.
T Consensus 446 ~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~~ 488 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQT 488 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---------
T ss_pred HHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccccC
Confidence 9999999999999999999999999999999998776655543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.3e-34 Score=310.00 Aligned_cols=183 Identities=14% Similarity=0.066 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhCChHHHHHHHHH
Q 004754 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (732)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~I~~dlgl~~s~s~igll~Sif~IG~~Ig~~~~g~LsDrfGrR~vLligllL 82 (732)
..+..++.++++.++.+++...+.+.+|.+.+++ . +..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 3467788888999999999999999999999999 8 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004754 83 YFIGGLVMLW----SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM 158 (732)
Q Consensus 83 ~aIgsll~a~----a~s~~~LiI~R~L~G~g~G~~~~~~~alI~E~fP~~~Rg~~~~l~~~~~~~G~aIg~l~~l~~~l~ 158 (732)
.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++. ......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~--~~~~l~ 179 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL--LFLLGM 179 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH--HHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999944 444444
Q ss_pred ccch-hHHHHHHHHHHHHHHHHHHHhhccCCch
Q 004754 159 TAPS-WRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (732)
Q Consensus 159 ~~~~-Wr~~~~i~~~l~~i~~~l~~~~~~esp~ 190 (732)
+..+ ||+.|++.++++++..++.++++||+|+
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 5567 9999999999988877777788998874
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=4.7e-31 Score=284.73 Aligned_cols=175 Identities=16% Similarity=0.129 Sum_probs=155.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhCChHHHHHHHHH
Q 004754 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (732)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~I~~dlgl~~s~s~igll~Sif~IG~~Ig~~~~g~LsDrfGrR~vLligllL 82 (732)
+.+..++++++..++.+++...+++.+|.+.+++|+ +..+.|++.+++.+++.++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 446677778888899999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 004754 83 YFIGGLVM---LWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (732)
Q Consensus 83 ~aIgsll~---a~a~s~~~LiI~R~L~G~g~G~~~~~~~alI~E~fP~~~Rg~~~~l~~~~~~~G~aIg~l~~l~~~l~~ 159 (732)
.+++.+++ .++++++.++++|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++........ .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~ 179 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL-S 179 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH-T
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 99999999 8889999999999999999999999999999999999999999999999999999999554433321 2
Q ss_pred cch-------------------------hHHHHHHHHHHHHHHHHH
Q 004754 160 APS-------------------------WRLMLGVLFIPSLIYFVL 180 (732)
Q Consensus 160 ~~~-------------------------Wr~~~~i~~~l~~i~~~l 180 (732)
..+ ||+.|++.+++.++..++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222 999998888777665544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=7.1e-28 Score=265.12 Aligned_cols=171 Identities=17% Similarity=0.191 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH-----hCCCCchhHHHHHHHHHHHHHHHHHHhHHHhhhh-hCChHHHHHHHHH
Q 004754 10 AAAIGNLLQGWDNATIAG-AVLYIKRE-----FHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLIVSSVL 82 (732)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~I~~d-----lgl~~s~s~igll~Sif~IG~~Ig~~~~g~LsDr-fGrR~vLligllL 82 (732)
.+.+..++..+....+.. ..+++.++ +|+ +..+.|++.+++.++..++++++|+++|| +|||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 444455555555444433 44566666 899 99999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcch--hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004754 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEI--RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA 160 (732)
Q Consensus 83 ~aIgsll~a~a~s~~~LiI~R~L~G~g~G~~~~~~~alI~E~fP~~~--Rg~~~~l~~~~~~~G~aIg~l~~l~~~l~~~ 160 (732)
.+++.++++++++++.++++|++.|++.|...+...+++.|++|+++ |+.+.++.+.+.++|.+++ +.....+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~--~~~~~~l~~~ 172 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA--PLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH--HHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988 7788888999999999999 4445555666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 004754 161 PSWRLMLGVLFIPSLIYFVLTIFY 184 (732)
Q Consensus 161 ~~Wr~~~~i~~~l~~i~~~l~~~~ 184 (732)
.+||+.|++.++..++.+++.++.
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999888777655544433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=4e-28 Score=257.86 Aligned_cols=178 Identities=18% Similarity=0.234 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhCChHHHHHHHHHHHHHH
Q 004754 8 AIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGG 87 (732)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~I~~dlgl~~s~s~igll~Sif~IG~~Ig~~~~g~LsDrfGrR~vLligllL~aIgs 87 (732)
++.++++.++.+++...+.+.+|.+.+++|. +..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 3556778888899999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 004754 88 LVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLML 167 (732)
Q Consensus 88 ll~a~a~s~~~LiI~R~L~G~g~G~~~~~~~alI~E~fP~~~Rg~~~~l~~~~~~~G~aIg~l~~l~~~l~~~~~Wr~~~ 167 (732)
+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++ +.......+..+||+.|
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~ 157 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLA--PLIGGLLDTMWNWRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHH--HHHHHHSSCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 55556666667999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCc
Q 004754 168 GVLFIPSLIYFVLTIFYLPESP 189 (732)
Q Consensus 168 ~i~~~l~~i~~~l~~~~~~esp 189 (732)
++.+++.++..++.++++||+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 158 LFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHCcccC
Confidence 9998888776665566677764
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=4.8e-24 Score=236.89 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhC------CCCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-CChHHHHHHHHH
Q 004754 11 AAIGNLLQGWDNATIAGAV-LYIKREFH------LETEPTIEGLIVAMSLIGATCITTCSGAIADWL-GRRPMLIVSSVL 82 (732)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~I~~dlg------l~~s~s~igll~Sif~IG~~Ig~~~~g~LsDrf-GrR~vLligllL 82 (732)
+.+..++..+....+.+.+ +++.+++| + +..+.|++.+++.++..++.+++|+++||+ |||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3344444455444444444 46778899 8 889999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhH---HHHHHHHHHHHHHHHHHHHHhh
Q 004754 83 YFIGGLVMLWSP-NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTL---PQFTGCVGMFLAYCMVFGMSLM 158 (732)
Q Consensus 83 ~aIgsll~a~a~-s~~~LiI~R~L~G~g~G~~~~~~~alI~E~fP~~~Rg~~~~l---~~~~~~~G~aIg~l~~l~~~l~ 158 (732)
.+++.+++.+++ +++.++++|++.|++.+...+...+++.|++|+++|+++.++ .+.+.++|.++++ .....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~--~~~~~l~ 172 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS--LSMPLLL 172 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH--HTSTHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 999999999998 999999999999999999999999999999999999877776 8888999999984 4444445
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 004754 159 TAPSWRLMLGVLFIPSLIYFVLT 181 (732)
Q Consensus 159 ~~~~Wr~~~~i~~~l~~i~~~l~ 181 (732)
+..+||+.|++.+++.++.+++.
T Consensus 173 ~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 173 KNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 56799999999888776655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=1.1e-24 Score=237.67 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHhhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhcccch
Q 004754 558 LLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPI 637 (732)
Q Consensus 558 ~~~~~i~~~~~l~~~~i~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (732)
.+...+..+..+++.++.++++||+|||+++..+..+..++++.+.+ .. +.+..++..+++..++. ...+.
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~l~~~~~~-~~~~~ 332 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----AT---SALEVVILKTLHMFEVP-FLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CC---SHHHHHHHTTHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hc---cHHHHHHHHHHHHHHHH-HHHHH
Confidence 34445566778889999999999999999887776666554433322 01 11222222222333322 22233
Q ss_pred hhhhhccCCCccchhhHHHHH-HHHHHHHHHHHHhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhccCCCCCCh
Q 004754 638 PNILCSEIFPTRVRGICIAIC-ALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPL 712 (732)
Q Consensus 638 ~~~~~~e~~p~~~r~~~~gi~-~~~~~ig~~i~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~et~~~~~ 712 (732)
.+.+++|.+|++.|+++.++. +...++|++++|.+.|++.+..|+...|.+.+++++++.++.++..||++..++
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 457889999999999999995 888899999999999999998898889999999988888877777787766543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.31 E-value=6.2e-11 Score=127.65 Aligned_cols=170 Identities=19% Similarity=0.105 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh--CChHHHHHHHHHHH-H
Q 004754 10 AAAIGNLLQGWDNATIAGAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL--GRRPMLIVSSVLYF-I 85 (732)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~~d-lgl~~s~s~igll~Sif~IG~~Ig~~~~g~LsDrf--GrR~vLligllL~a-I 85 (732)
...+..++.......+...+|.+.++ +|. +..+.+++.++..++.+++.+++|++.||+ |||+.+.++.++.. +
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 333 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 34444555555555566667766666 888 889999999999999999999999999999 99999888877776 6
Q ss_pred HHHHHHhh--hhHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhHHHHHHHH-HHHHHHHHHHHHHhhccch
Q 004754 86 GGLVMLWS--PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCV-GMFLAYCMVFGMSLMTAPS 162 (732)
Q Consensus 86 gsll~a~a--~s~~~LiI~R~L~G~g~G~~~~~~~alI~E~fP~~~Rg~~~~l~~~~~~~-G~aIg~l~~l~~~l~~~~~ 162 (732)
+.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++||.+.++.+....+ |.+++ +.....+.+..+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~--~~~~g~l~~~~g 411 (451)
T 1pw4_A 334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA--SAIVGYTVDFFG 411 (451)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSSC
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhcC
Confidence 66666555 36788888899999999999999999999999999999999999999999 99999 555556666778
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 004754 163 WRLMLGVLFIPSLIYFVLTIF 183 (732)
Q Consensus 163 Wr~~~~i~~~l~~i~~~l~~~ 183 (732)
|+..|++.++++++..++.++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887776655443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.28 E-value=1.1e-10 Score=125.57 Aligned_cols=169 Identities=11% Similarity=0.092 Sum_probs=120.6
Q ss_pred hhHHHHHhHHHHHHHhcccchhcccCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHhhHHHHHHHHHHHHH
Q 004754 525 GINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVL 604 (732)
Q Consensus 525 g~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~i~~~~~l~~~~i~g~l~d~~grr~~~~~~~~~~~i~~~~~~~ 604 (732)
.......+.|.+.++.| .+..+ ..++..+..++.+++.++.|+++||+|||++++.+..+..++.+++..
T Consensus 41 ~~~~~~~~~~~~~~~~g---------~s~~~-~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 110 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFT---------LTNFQ-AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP 110 (438)
T ss_dssp HHHHHHHHHHHHHHHSC---------CCSHH-HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHcC---------CCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence 34556667777766654 55544 444556788999999999999999999999999999888888877643
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHhhcccchhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHhHHHHHH-Hhhc--
Q 004754 605 SSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLL-NSVG-- 681 (732)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~gi~~~~~~ig~~i~~~~~~~l~-~~~g-- 681 (732)
.... .+.+..++..++.+.+.+ ...+....+++|.+|++.|+.+.++.+....+|.++++.+.+.+. +..+
T Consensus 111 ~~~~-----~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 184 (438)
T 3o7q_A 111 AAEI-----MNYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ 184 (438)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred cccc-----ccHHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2111 122233333344444433 334455688899999999999999999999999999999999998 4444
Q ss_pred -----------------------hhHHHHHHHHHHHHHHHHHHH-hccCCCC
Q 004754 682 -----------------------LAGVFGMYAVVCVISWIFVFI-KVPETKG 709 (732)
Q Consensus 682 -----------------------~~~~f~~~~~~~~i~~i~~~~-~~~et~~ 709 (732)
|++.|++.++++++..++.++ ..||++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 788888877777666555443 3455543
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.23 E-value=3.9e-11 Score=126.95 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=124.4
Q ss_pred hhHHHHHhHHHHHHHhcccchhcccCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHhhHHHHHHHHHHHHH
Q 004754 525 GINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVL 604 (732)
Q Consensus 525 g~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~i~~~~~l~~~~i~g~l~d~~grr~~~~~~~~~~~i~~~~~~~ 604 (732)
....+....|.+.++ +|.+..+. .++..+..++..++.++.|+++||+|||+.++.+..+..++.+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~---------~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 15 AQTIYIPAIADMARD---------LNVREGAV-QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHTT---------SSSTTHHH-HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHH---------cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 344455556666554 45555444 44556788999999999999999999999999988888888777665
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHhhcccchhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhchhH
Q 004754 605 SSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAG 684 (732)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~gi~~~~~~ig~~i~~~~~~~l~~~~g~~~ 684 (732)
.. +.+..++..++.+.+.+ ...+....++.|.+|++.|+.+.++.+....+|.+++|.+.+++.+..||+.
T Consensus 85 ~~--------~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 155 (375)
T 2gfp_A 85 TS--------SLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA 155 (375)
T ss_dssp HH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred hc--------cHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHH
Confidence 31 12222233333333332 2445566788999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCC
Q 004754 685 VFGMYAVVCVISWIFVFIKVPETKGM 710 (732)
Q Consensus 685 ~f~~~~~~~~i~~i~~~~~~~et~~~ 710 (732)
.|++.++.+++..+...+.+||++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 99998888888776666677887644
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.22 E-value=7.4e-10 Score=121.25 Aligned_cols=180 Identities=16% Similarity=0.071 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhCChHHHHHHHHHHHHHHHHHHhh
Q 004754 14 GNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS 93 (732)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~I~~dlgl~~s~s~igll~Sif~IG~~Ig~~~~g~LsDrfGrR~vLligllL~aIgsll~a~a 93 (732)
..+........+....+.+.+..+. +............+...++.++++++.||+|||+.++.+..+.+++.+..++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 285 SIFQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 3333333344455566788888887 66777777778888899999999999999999999999988888877665542
Q ss_pred h----hHHHHHHHHHHHHHH-HhhHhHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HhhccchhH
Q 004754 94 P----NVYVLLLARLLDGFG-IGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGM----SLMTAPSWR 164 (732)
Q Consensus 94 ~----s~~~LiI~R~L~G~g-~G~~~~~~~alI~E~fP~~~Rg~~~~l~~~~~~~G~aIg~l~~l~~----~l~~~~~Wr 164 (732)
. ..+..++.-++...+ .....++...+.+|.+|.+.|+.++++......+|.++++...... ......++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~ 442 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG 442 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1 112222222222222 2233467788999999999999999999988888888874332221 112233566
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhhhhccccHHH
Q 004754 165 LMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEA 201 (732)
Q Consensus 165 ~~~~i~~~l~~i~~~l~~~~~~esp~~l~~~~~~~~~ 201 (732)
+.|++.+.++++..++.++++||| |++..|.
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PET------kg~tLee 473 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPET------KGKTLEE 473 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC------TTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHheecCC------CCCCHHH
Confidence 788888888888888888999999 6776544
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.22 E-value=2.5e-10 Score=125.16 Aligned_cols=168 Identities=16% Similarity=0.128 Sum_probs=122.4
Q ss_pred hhHHHHHhHHHHHHHhcccchhcccCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhc-ccchhHHHhhHHHHHHHHHHHH
Q 004754 525 GINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDI-SGRRTLLLSTIPILITSLVVLV 603 (732)
Q Consensus 525 g~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~i~~~~~l~~~~i~g~l~d~-~grr~~~~~~~~~~~i~~~~~~ 603 (732)
+++.+..+++.++.+.- ....+|.+..+.+.+ ..+..++..++.+++|+++|| +|||++++.+..+..++.+++.
T Consensus 28 ~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLI---STGDLHITRATAASI-MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHH---HHTSCCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---chhhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 45556667777776520 112366777555554 556889999999999999999 8999999998888877776655
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHhhcccchhhhhhccCCCccc--hhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 004754 604 LSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRV--RGICIAICALVFWIGDIIVTYSLPVLLNSVG 681 (732)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~gi~~~~~~ig~~i~~~~~~~l~~~~g 681 (732)
+. .+.+..++..++.+.+.+ ...+....+++|.+|++. |+.+.++.+....+|.+++|.+.+.+.+..|
T Consensus 104 ~~--------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 104 LP--------FGASALFGSIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp SC--------CSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred Hh--------hhHHHHHHHHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 41 122233333444443333 234556678899999988 7788888999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc
Q 004754 682 LAGVFGMYAVVCVISWIFVFIKVP 705 (732)
Q Consensus 682 ~~~~f~~~~~~~~i~~i~~~~~~~ 705 (732)
|++.|++.++.++++.++.++..+
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999988877777666554434
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.19 E-value=1.4e-10 Score=126.07 Aligned_cols=146 Identities=12% Similarity=0.171 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 004754 42 PTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYI 121 (732)
Q Consensus 42 ~s~igll~Sif~IG~~Ig~~~~g~LsDrfGrR~vLligllL~aIgsll~a~a~s~~~LiI~R~L~G~g~G~~~~~~~alI 121 (732)
....+++.++..++..++.++.|+++||+|||+++.++.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888888999999999999999999999999888888877777778888888888888988887778888999
Q ss_pred HhcCCcchhhhhhhH-HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhhccCCc
Q 004754 122 SETAPPEIRGLLNTL-PQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (732)
Q Consensus 122 ~E~fP~~~Rg~~~~l-~~~~~~~G~aIg~l~~l~~~l~~~~~Wr~~~~i~~~l~~i~~~l~~~~~~esp 189 (732)
.|.+|++.||.+.++ .+....+|.++++ .....+.+..+++.+|.+.++++++..++.+++.||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp--~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMS--VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHT--HHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhh--hhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999888 4777888988884 44444455668899999988888887766666677654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.14 E-value=9e-10 Score=122.03 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=116.6
Q ss_pred hhHHHHHhHHHHHHH-hcccchhcccCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cchhHHHhhHHHHHHHHHHH
Q 004754 525 GINGVLYYTPQILEQ-AGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDIS-GRRTLLLSTIPILITSLVVL 602 (732)
Q Consensus 525 g~~~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~~~~~~~i~~~~~l~~~~i~g~l~d~~-grr~~~~~~~~~~~i~~~~~ 602 (732)
+++.+..+++.++.+ .|-+ ..++.+..+.+. +..+..++.+++.+++|+++||+ |||++++.+..+..++.+++
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~---~~~~~s~~~~g~-~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLS---IPEELRGAVAKD-VFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL 102 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSC---CSSSTTTTTHHH-HHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc---cccccCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 345566677777654 2200 011166655544 45567899999999999999999 99999998888877777666
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHhhcccchhhhhhccCCCccchhhHHHH---HHHHHHHHHHHHHhHHHHHHHh
Q 004754 603 VLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAI---CALVFWIGDIIVTYSLPVLLNS 679 (732)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~gi---~~~~~~ig~~i~~~~~~~l~~~ 679 (732)
.+.. .+.+..++..++.+.+.+ ...+....++.|.+|++.|+.+.++ .+....+|.+++|.+.+.+.+.
T Consensus 103 ~~~~-------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 103 AIFE-------HSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHTS-------SCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHhc-------ccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5521 012223333333333333 3345666888999999999876666 8889999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHH
Q 004754 680 VGLAGVFGMYAVVCVISWIFVFI 702 (732)
Q Consensus 680 ~g~~~~f~~~~~~~~i~~i~~~~ 702 (732)
.||+..|++.+++++++.++.++
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887776655544
Done!