Query 004755
Match_columns 732
No_of_seqs 294 out of 1373
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 1.7E-37 3.8E-42 328.3 14.5 135 175-317 107-241 (299)
2 KOG1315 Predicted DHHC-type Zn 100.0 2.6E-32 5.6E-37 289.3 12.9 127 178-317 106-232 (307)
3 PF01529 zf-DHHC: DHHC palmito 100.0 2.8E-32 6.1E-37 264.8 8.9 131 176-317 43-173 (174)
4 COG5273 Uncharacterized protei 100.0 6.9E-28 1.5E-32 257.3 15.7 136 176-324 104-239 (309)
5 KOG1314 DHHC-type Zn-finger pr 99.9 3E-28 6.4E-33 256.8 5.6 135 179-320 89-229 (414)
6 KOG1313 DHHC-type Zn-finger pr 99.9 2.3E-27 4.9E-32 243.8 9.2 140 179-322 100-250 (309)
7 KOG1312 DHHC-type Zn-finger pr 99.9 2E-24 4.4E-29 223.1 10.0 135 181-318 148-291 (341)
8 KOG0509 Ankyrin repeat and DHH 99.8 3.7E-21 8E-26 216.2 10.0 67 182-248 421-487 (600)
9 COG5273 Uncharacterized protei 93.2 2 4.4E-05 47.0 14.6 127 179-321 121-248 (309)
10 KOG1311 DHHC-type Zn-finger pr 90.2 0.44 9.5E-06 51.3 5.4 76 2-78 9-87 (299)
11 PF01529 zf-DHHC: DHHC palmito 87.4 2 4.4E-05 41.9 7.5 52 179-241 60-111 (174)
12 PF13240 zinc_ribbon_2: zinc-r 68.9 2.6 5.5E-05 29.1 1.0 21 183-203 1-21 (23)
13 KOG0509 Ankyrin repeat and DHH 64.3 2.6 5.7E-05 49.7 0.6 59 179-238 323-382 (600)
14 PRK04136 rpl40e 50S ribosomal 52.2 8.1 0.00017 31.5 1.3 25 179-203 12-36 (48)
15 PF13248 zf-ribbon_3: zinc-rib 52.0 7.8 0.00017 27.2 1.1 22 182-203 3-24 (26)
16 KOG1315 Predicted DHHC-type Zn 51.7 54 0.0012 36.3 7.9 48 179-237 121-168 (307)
17 KOG1313 DHHC-type Zn-finger pr 50.4 26 0.00056 38.2 5.1 55 178-243 113-167 (309)
18 PTZ00303 phosphatidylinositol 48.3 11 0.00024 45.9 2.1 23 181-203 460-489 (1374)
19 KOG1314 DHHC-type Zn-finger pr 47.7 7.3 0.00016 43.5 0.5 44 179-233 103-146 (414)
20 PF12773 DZR: Double zinc ribb 47.3 18 0.0004 28.5 2.7 36 179-214 10-48 (50)
21 PF15232 DUF4585: Domain of un 47.0 18 0.00038 32.1 2.7 20 592-611 28-47 (75)
22 PF10571 UPF0547: Uncharacteri 40.6 16 0.00034 26.0 1.2 22 182-203 1-22 (26)
23 PF08972 DUF1902: Domain of un 40.4 17 0.00037 30.3 1.5 15 595-609 4-18 (54)
24 PF03154 Atrophin-1: Atrophin- 38.5 64 0.0014 40.5 6.5 49 419-467 89-141 (982)
25 PF07010 Endomucin: Endomucin; 37.5 30 0.00065 36.7 3.1 29 45-73 195-223 (259)
26 PRK15103 paraquat-inducible me 34.9 2.5E+02 0.0054 32.4 10.2 32 180-211 220-251 (419)
27 PF06906 DUF1272: Protein of u 33.8 18 0.00038 30.5 0.6 36 183-221 7-50 (57)
28 KOG2927 Membrane component of 32.5 22 0.00047 39.9 1.3 28 10-37 187-214 (372)
29 KOG4399 C2HC-type Zn-finger pr 30.3 11 0.00024 40.5 -1.3 32 176-207 199-230 (325)
30 KOG1842 FYVE finger-containing 29.0 18 0.0004 41.5 -0.0 28 178-205 177-206 (505)
31 PF12773 DZR: Double zinc ribb 28.9 40 0.00086 26.6 1.9 25 178-202 26-50 (50)
32 PF05502 Dynactin_p62: Dynacti 28.2 31 0.00066 40.3 1.6 46 177-222 22-102 (483)
33 PF01020 Ribosomal_L40e: Ribos 28.1 34 0.00075 28.4 1.4 26 179-204 15-42 (52)
34 TIGR00155 pqiA_fam integral me 27.1 4E+02 0.0086 30.6 10.1 32 180-211 214-246 (403)
35 PHA02680 ORF090 IMV phosphoryl 27.1 1.6E+02 0.0034 27.1 5.4 38 275-315 44-81 (91)
36 PF01363 FYVE: FYVE zinc finge 26.6 24 0.00052 29.6 0.3 28 179-206 7-36 (69)
37 PRK05978 hypothetical protein; 25.9 3.9E+02 0.0084 26.8 8.5 90 184-308 36-135 (148)
38 cd01995 ExsB ExsB is a transcr 25.2 28 0.00061 33.9 0.5 30 176-208 135-164 (169)
39 KOG3183 Predicted Zn-finger pr 24.6 33 0.00072 36.6 0.9 12 205-216 38-49 (250)
40 COG4640 Predicted membrane pro 24.3 34 0.00074 38.9 1.0 42 181-222 1-43 (465)
41 PF08600 Rsm1: Rsm1-like; Int 24.3 38 0.00083 30.7 1.1 11 210-220 56-66 (91)
42 TIGR00155 pqiA_fam integral me 23.4 3.6E+02 0.0077 30.9 8.9 33 179-211 11-49 (403)
43 PF11289 DUF3092: Protein of u 22.0 96 0.0021 32.7 3.6 47 30-76 99-147 (273)
44 PF10624 TraS: Plasmid conjuga 21.7 6.8E+02 0.015 24.9 9.0 45 273-317 63-108 (164)
45 COG1552 RPL40A Ribosomal prote 21.5 22 0.00048 29.2 -0.8 24 180-203 13-36 (50)
46 KOG3488 Dolichol phosphate-man 20.2 1.5E+02 0.0032 26.3 3.8 25 15-39 11-35 (81)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=328.28 Aligned_cols=135 Identities=29% Similarity=0.470 Sum_probs=105.9
Q ss_pred cCCCCCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEEee
Q 004755 175 QGNGDDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRCFV 254 (732)
Q Consensus 175 ~~~~~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~~~ 254 (732)
++...+++||.+|+.++|+|||||++||+||++|||||||+|||||++|||||+.|++++.+++++.+++..+.+.....
T Consensus 107 ~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~ 186 (299)
T KOG1311|consen 107 NGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRAD 186 (299)
T ss_pred CCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567899999999999999999999999999999999999999999999999999998888888877766655433222
Q ss_pred cCcchhHHHHhhhcCCCCCchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCcchHHHHHH
Q 004755 255 NKKSMETEIIDRLGDGFSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVA 317 (732)
Q Consensus 255 ~~~~~~~~i~~~Lg~~~s~~~f~ivv~l~~lLsll~~i~Lg~L~~fHlyLI~kN~TTyE~I~~ 317 (732)
...... . .........+.++++++++++++++++|++||+++|.+|+||||++++
T Consensus 187 ~~~~~~-------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~ 241 (299)
T KOG1311|consen 187 NLKVNL-------T-PVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS 241 (299)
T ss_pred cccccc-------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc
Confidence 111100 0 011122233445555778888889999999999999999999999986
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=99.97 E-value=2.6e-32 Score=289.25 Aligned_cols=127 Identities=26% Similarity=0.502 Sum_probs=98.1
Q ss_pred CCCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEEeecCc
Q 004755 178 GDDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRCFVNKK 257 (732)
Q Consensus 178 ~~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~~~~~~ 257 (732)
.+..+||.+|+.+||+|||||++|+|||+||||||+|+|||||.+|||+|++|++|+.+++++.+...+..+...+. ..
T Consensus 106 ~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~-~~ 184 (307)
T KOG1315|consen 106 DGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQ-GG 184 (307)
T ss_pred CCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence 47889999999999999999999999999999999999999999999999999999999887655544443322220 00
Q ss_pred chhHHHHhhhcCCCCCchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCcchHHHHHH
Q 004755 258 SMETEIIDRLGDGFSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVA 317 (732)
Q Consensus 258 ~~~~~i~~~Lg~~~s~~~f~ivv~l~~lLsll~~i~Lg~L~~fHlyLI~kN~TTyE~I~~ 317 (732)
..........++++.++++.+.+.++.|+++|++||.+|+||+|....
T Consensus 185 ------------~~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~ 232 (307)
T KOG1315|consen 185 ------------AGPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKS 232 (307)
T ss_pred ------------ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcc
Confidence 000011112334445566666777778999999999999999998765
No 3
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=99.97 E-value=2.8e-32 Score=264.85 Aligned_cols=131 Identities=28% Similarity=0.524 Sum_probs=100.9
Q ss_pred CCCCCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEEeec
Q 004755 176 GNGDDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRCFVN 255 (732)
Q Consensus 176 ~~~~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~~~~ 255 (732)
......+||.+|+..||+|||||+.||+||.+|||||+|+|||||++||++|++|+++..+++++.+.+.++.+......
T Consensus 43 ~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~ 122 (174)
T PF01529_consen 43 DENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPS 122 (174)
T ss_pred ccCCCCEECcccCCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34578899999999999999999999999999999999999999999999999999998888877766655544322211
Q ss_pred CcchhHHHHhhhcCCCCCchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCcchHHHHHH
Q 004755 256 KKSMETEIIDRLGDGFSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVA 317 (732)
Q Consensus 256 ~~~~~~~i~~~Lg~~~s~~~f~ivv~l~~lLsll~~i~Lg~L~~fHlyLI~kN~TTyE~I~~ 317 (732)
... ..+. .......+++++++++++++++.|+++|+++|.+|+||+|++++
T Consensus 123 ~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 123 ISF----------SSFW-IFSNFSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred ccc----------cccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 110 0000 00001113445566777889999999999999999999999975
No 4
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=99.95 E-value=6.9e-28 Score=257.26 Aligned_cols=136 Identities=27% Similarity=0.528 Sum_probs=101.3
Q ss_pred CCCCCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEEeec
Q 004755 176 GNGDDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRCFVN 255 (732)
Q Consensus 176 ~~~~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~~~~ 255 (732)
+.....+||.+|+.+||+|||||+.||+||++|||||+|+|||||.+|||+|++|+++..+..++.+....+.+...+..
T Consensus 104 ~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~ 183 (309)
T COG5273 104 GKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSI 183 (309)
T ss_pred CccccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44577899999999999999999999999999999999999999999999999999988777666655555443322211
Q ss_pred CcchhHHHHhhhcCCCCCchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHhhhccC
Q 004755 256 KKSMETEIIDRLGDGFSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAMRAMSEA 324 (732)
Q Consensus 256 ~~~~~~~i~~~Lg~~~s~~~f~ivv~l~~lLsll~~i~Lg~L~~fHlyLI~kN~TTyE~I~~~R~~~e~ 324 (732)
..... ....+++..+..+..++++.+..++++|.+++..+.||+|.....|..+..
T Consensus 184 ~~~~~-------------~~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~ 239 (309)
T COG5273 184 RHDTS-------------LAICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTL 239 (309)
T ss_pred cCChH-------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecc
Confidence 11100 000112222334555566777889999999999999999998877655443
No 5
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=99.94 E-value=3e-28 Score=256.76 Aligned_cols=135 Identities=27% Similarity=0.524 Sum_probs=92.7
Q ss_pred CCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEEeecCcc
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRCFVNKKS 258 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~~~~~~~ 258 (732)
...+||..|+.+|++|||||+.|||||.+|||||||+|||||..||.+|+.||+++.+.++-.. .+++ | .....
T Consensus 89 ~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~t----iI~~-~-~~~~~ 162 (414)
T KOG1314|consen 89 MFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGT----IILV-C-AQYRG 162 (414)
T ss_pred HHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccce----eeeh-h-HHHHH
Confidence 3567999999999999999999999999999999999999999999999999887776543211 1110 0 00001
Q ss_pred hhHHHHhhhcCC------CCCchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHhh
Q 004755 259 METEIIDRLGDG------FSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAMRA 320 (732)
Q Consensus 259 ~~~~i~~~Lg~~------~s~~~f~ivv~l~~lLsll~~i~Lg~L~~fHlyLI~kN~TTyE~I~~~R~ 320 (732)
+...+....+.. |+... .+.+++.+.+++...+.++.||+.++..|.+|+|-+|.+...++
T Consensus 163 Iy~~W~~~~g~~hlp~v~ft~~~-li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka 229 (414)
T KOG1314|consen 163 IYFRWYIKYGLRHLPIVFFTLSS-LIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKA 229 (414)
T ss_pred HHHHHHhhcccccCceeeccHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 111111111111 11111 12233344455666778899999999999999999998874443
No 6
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.94 E-value=2.3e-27 Score=243.83 Aligned_cols=140 Identities=27% Similarity=0.460 Sum_probs=99.9
Q ss_pred CCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEEeecCcc
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRCFVNKKS 258 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~~~~~~~ 258 (732)
+...+|.+|+.+|++|+|||+.|||||++|||||||+|||||..|||||++|++|+.+.+.+....+.+.++...-..
T Consensus 100 ~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~-- 177 (309)
T KOG1313|consen 100 ENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPI-- 177 (309)
T ss_pred ccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--
Confidence 345699999999999999999999999999999999999999999999999999998888776555444332221111
Q ss_pred hhHHHHhhhcC--------CCCCch---hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHhhhc
Q 004755 259 METEIIDRLGD--------GFSRAP---FATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAMRAMS 322 (732)
Q Consensus 259 ~~~~i~~~Lg~--------~~s~~~---f~ivv~l~~lLsll~~i~Lg~L~~fHlyLI~kN~TTyE~I~~~R~~~ 322 (732)
..+...-+. .+.+.. -..-++.+.+++..++++++.|..+|.++|.+|.|.+|+++.+++.+
T Consensus 178 --~~~tay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k 250 (309)
T KOG1313|consen 178 --EEITAYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERK 250 (309)
T ss_pred --hhcccccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhH
Confidence 111110000 000000 00112234456666778899999999999999999999988765543
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.91 E-value=2e-24 Score=223.10 Aligned_cols=135 Identities=27% Similarity=0.496 Sum_probs=82.7
Q ss_pred ccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEE-eecCcch
Q 004755 181 ALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRC-FVNKKSM 259 (732)
Q Consensus 181 ~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~-~~~~~~~ 259 (732)
...|++|+.+||.|||||+.||+||.+|||||.|+|||||.+|+|||++|+++....+.+. .+.+.+++.. ..+...
T Consensus 148 ~~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~ya-ivrlgfi~ln~~sdl~q- 225 (341)
T KOG1312|consen 148 NVKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYA-IVRLGFIVLNVMSDLYQ- 225 (341)
T ss_pred CCccccccCCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHH-HHHHHheehhhccccch-
Confidence 4679999999999999999999999999999999999999999999999987764444332 2223222111 000000
Q ss_pred hHHHHhhhcCC-CCCchhHHHHHH------HHHHHhhh-HHHHHHHHHHHHHHHHcCcchHHHHHHH
Q 004755 260 ETEIIDRLGDG-FSRAPFATVVAI------CTAVSMLA-CIPLGELFFFHMILIRKGITTYEYVVAM 318 (732)
Q Consensus 260 ~~~i~~~Lg~~-~s~~~f~ivv~l------~~lLsll~-~i~Lg~L~~fHlyLI~kN~TTyE~I~~~ 318 (732)
...+.. ++-+ ....-+.+-.++ .+.++.+. .-++++..+|-+|+-.+|.||.|+....
T Consensus 226 ~v~ilt-~~~g~~ks~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~d 291 (341)
T KOG1312|consen 226 EVYILT-LGHGHVKSTVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRGD 291 (341)
T ss_pred heeeee-eeecchhhHHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhccc
Confidence 000000 0000 000000000000 11112111 2247778888999999999999998763
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.84 E-value=3.7e-21 Score=216.22 Aligned_cols=67 Identities=37% Similarity=0.748 Sum_probs=58.9
Q ss_pred cccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhhee
Q 004755 182 LFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAV 248 (732)
Q Consensus 182 ~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~v 248 (732)
+||.+|.+.||.|||||++|||||.+|||||||++||||.+|+++|+.|++.....+.+.+..+.++
T Consensus 421 ~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y 487 (600)
T KOG0509|consen 421 RFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYY 487 (600)
T ss_pred cceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999887666655554444443
No 9
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=93.17 E-value=2 Score=47.01 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=77.0
Q ss_pred CCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEEeecCcc
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRCFVNKKS 258 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~~~~~~~ 258 (732)
+..++|..|+.=+...-|||.--|+||-+--| +=+-.|+.++.+..+..++.+...+..+...-.+...
T Consensus 121 ~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (309)
T COG5273 121 PRSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSL 189 (309)
T ss_pred CCCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 67889999999999999999999999987544 5677888877666555555444444433322222222
Q ss_pred h-hHHHHhhhcCCCCCchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHhhh
Q 004755 259 M-ETEIIDRLGDGFSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAMRAM 321 (732)
Q Consensus 259 ~-~~~i~~~Lg~~~s~~~f~ivv~l~~lLsll~~i~Lg~L~~fHlyLI~kN~TTyE~I~~~R~~ 321 (732)
. +..+.. +..+ .....+.+..++......++..+.....+.+.++.++-|.....|..
T Consensus 190 ~~~~li~~--~~~~---~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~ 248 (309)
T COG5273 190 AICFLIFG--CSLL---GVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRES 248 (309)
T ss_pred HHHHHHHh--hhHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccC
Confidence 2 222221 0000 00011112222233334556677888899999999999987665543
No 10
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=90.21 E-value=0.44 Score=51.26 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=44.0
Q ss_pred ccccCCCCCccchhhhHhHHHHHhhhh--eeeEecccccc-hhhHHHHHHHHHHHHHHHHHhhheeeeecCCCCCccccc
Q 004755 2 VRKHGWQLPAHTFQVVAITVFCLLVVA--FYAFFAPFLGG-HIWEYALFATYSPVALLVFILYVRCTAINPADPGIMSKF 78 (732)
Q Consensus 2 ~RkhGWqlPlH~lQVVai~Vf~lL~va--fYvf~aPfLg~-~~~~yi~i~vys~L~l~V~~LYirct~iDPaDPGV~~k~ 78 (732)
+++.||.+...+..+..++.++++... |+++..+++.. ..+..+.+..-.+.++.++.+...|..+. +|||++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~if~~~~~~~~~~~~~~~~-sdpg~~p~~ 87 (299)
T KOG1311|consen 9 IPRRGGRILDPPVALPVLVTYVLLVGSETFFVFLPPLLPRGGVSPAVLVLGAIFFLLNILNLMLACFRML-SDPGIVPRA 87 (299)
T ss_pred ccCCCceeeccccchhHHHHHHHHhhheEEEEEEeeecCCcccchHHHHHHHHHHHHHHHHHHHHHhccc-CCCceecCc
Confidence 467788888888888877777766544 57788888875 22222222221222222223333333222 799999874
No 11
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=87.41 E-value=2 Score=41.87 Aligned_cols=52 Identities=23% Similarity=0.608 Sum_probs=40.8
Q ss_pred CCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHH
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIE 241 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~ 241 (732)
...++|..|+.-+..+-|||..-|+||-.--| +-|-.|+.++...+++.++.
T Consensus 60 ~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~ 111 (174)
T PF01529_consen 60 PRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFIL 111 (174)
T ss_pred CcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999997655 55777877665555554443
No 12
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=68.90 E-value=2.6 Score=29.08 Aligned_cols=21 Identities=33% Similarity=0.915 Sum_probs=18.9
Q ss_pred ccccccccccCCCcCCCCCCc
Q 004755 183 FCTLCNAEVRRFSKHCRSCDK 203 (732)
Q Consensus 183 yC~~C~~~kP~RSkHCr~Cnr 203 (732)
||..|....++.++.|..|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 699999999999999999975
No 13
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=64.31 E-value=2.6 Score=49.69 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=48.7
Q ss_pred CCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHH-HHHHHHHHHHH
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTF-ISLMAISLVWL 238 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~F-ilfl~~all~l 238 (732)
.-...|..|......+..+|..|..|+..|++||.|+. ||+.+|...| +.|+++++++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~ 382 (600)
T KOG0509|consen 323 VLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYF 382 (600)
T ss_pred hhheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999 9999997755 44555544443
No 14
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=52.23 E-value=8.1 Score=31.47 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.3
Q ss_pred CCccccccccccccCCCcCCCCCCc
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDK 203 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~Cnr 203 (732)
-....|..|.+.-|+++..|+.|+.
T Consensus 12 ~~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 12 FNKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred hcccchhcccCCCCccccccccCCC
Confidence 4567999999999999999998875
No 15
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=52.01 E-value=7.8 Score=27.23 Aligned_cols=22 Identities=36% Similarity=0.917 Sum_probs=18.8
Q ss_pred cccccccccccCCCcCCCCCCc
Q 004755 182 LFCTLCNAEVRRFSKHCRSCDK 203 (732)
Q Consensus 182 ~yC~~C~~~kP~RSkHCr~Cnr 203 (732)
.+|..|....++.++.|..|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 5799999988889999998874
No 16
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=51.68 E-value=54 Score=36.28 Aligned_cols=48 Identities=25% Similarity=0.539 Sum_probs=35.8
Q ss_pred CCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHH
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVW 237 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~ 237 (732)
+..+.|..|+.=+-+.-|||..-++||---++ +=+-.|+.+.+...++
T Consensus 121 dRaHHCsvC~rCvLKmDHHCpWi~nCVgf~Ny-----------KfF~lfl~y~~l~~~~ 168 (307)
T KOG1315|consen 121 DRAHHCSVCNRCVLKMDHHCPWINNCVGFRNY-----------KFFLLFLFYTNLYSIY 168 (307)
T ss_pred CccccchhhhhhhhccccCCcceeceecccch-----------HHHHHHHHHHHHHHHH
Confidence 67789999998889999999999999975443 4566676655544433
No 17
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=50.40 E-value=26 Score=38.16 Aligned_cols=55 Identities=20% Similarity=0.549 Sum_probs=44.4
Q ss_pred CCCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHH
Q 004755 178 GDDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAG 243 (732)
Q Consensus 178 ~~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~ 243 (732)
......|..|+.=+-.=-|||..-|+||--..| +=+-.|+.++..+..++.+...
T Consensus 113 ~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NH-----------ryFFlFl~~ltlat~~~~i~~~ 167 (309)
T KOG1313|consen 113 SPRTHHCSICNKCVLKMDHHCPWINNCVGAHNH-----------RYFFLFLFYLTLATSYAAIMCV 167 (309)
T ss_pred CCCcchhhHHhhHhhccccCCchhhcccccccc-----------hhHHHHHHHHHHHHHHHHHHHH
Confidence 356789999998888889999999999987766 5577888888777766666544
No 18
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=48.30 E-value=11 Score=45.86 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=18.6
Q ss_pred cccccccccccc-------CCCcCCCCCCc
Q 004755 181 ALFCTLCNAEVR-------RFSKHCRSCDK 203 (732)
Q Consensus 181 ~~yC~~C~~~kP-------~RSkHCr~Cnr 203 (732)
...|..|+..-. .|-||||.|++
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCcc
Confidence 367999987664 38999999987
No 19
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=47.66 E-value=7.3 Score=43.50 Aligned_cols=44 Identities=23% Similarity=0.559 Sum_probs=35.6
Q ss_pred CCccccccccccccCCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHH
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAI 233 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~ 233 (732)
...+.|.+|+.=+-+=-|||.--|.||---.| .-+-+|++|.+.
T Consensus 103 pRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh-----------~~F~~FLlf~iv 146 (414)
T KOG1314|consen 103 PRSHHCRKCNRCVMKMDHHCPWINNCVGWANH-----------AYFLRFLLFSIV 146 (414)
T ss_pred CccccchHHHHHHHhhccCCcchhhccccccc-----------HHHHHHHHHHHH
Confidence 56789999999999999999999999975444 346778877665
No 20
>PF12773 DZR: Double zinc ribbon
Probab=47.28 E-value=18 Score=28.53 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=26.1
Q ss_pred CCcccccccccccc---CCCcCCCCCCccccCCCccccc
Q 004755 179 DDALFCTLCNAEVR---RFSKHCRSCDKCVDGFDHHCRW 214 (732)
Q Consensus 179 ~~~~yC~~C~~~kP---~RSkHCr~CnrCV~rFDHHCpW 214 (732)
.+.+||..|....+ ...+.|..|+.=+...+.+|++
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 45778888887776 3456788888877777777764
No 21
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=47.04 E-value=18 Score=32.09 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=16.9
Q ss_pred cccceeeccCCCceeeeccc
Q 004755 592 KRTSVVWDQEAGRYVSVPIS 611 (732)
Q Consensus 592 ~~~sv~wd~~agr~vs~~~~ 611 (732)
-|+-..+|+|+|.||-|+.+
T Consensus 28 p~~k~lfDPETGqYVeV~iP 47 (75)
T PF15232_consen 28 PKTKTLFDPETGQYVEVLIP 47 (75)
T ss_pred cceeeeecCCCCcEEEEeCC
Confidence 35788999999999999764
No 22
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=40.57 E-value=16 Score=26.04 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=19.0
Q ss_pred cccccccccccCCCcCCCCCCc
Q 004755 182 LFCTLCNAEVRRFSKHCRSCDK 203 (732)
Q Consensus 182 ~yC~~C~~~kP~RSkHCr~Cnr 203 (732)
+.|..|...++.-++-|..|+.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 3699999999999999998874
No 23
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=40.40 E-value=17 Score=30.33 Aligned_cols=15 Identities=40% Similarity=0.893 Sum_probs=12.5
Q ss_pred ceeeccCCCceeeec
Q 004755 595 SVVWDQEAGRYVSVP 609 (732)
Q Consensus 595 sv~wd~~agr~vs~~ 609 (732)
..+||+|||-||+-.
T Consensus 4 ~a~wD~EA~VWvA~s 18 (54)
T PF08972_consen 4 RAFWDEEAGVWVATS 18 (54)
T ss_dssp EEEEETTTTEEEEE-
T ss_pred EEEEcCCCCEEEEec
Confidence 478999999999875
No 24
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=38.53 E-value=64 Score=40.52 Aligned_cols=49 Identities=31% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHHhhcCccccCCCCC----CCCCcCCCCCCcccceeecCCC
Q 004755 419 LDSSEAMRAAAKARASSSVLRPVDNRH----PDSEFSSSGNMSVRSSVSTDMG 467 (732)
Q Consensus 419 l~~~ea~kaA~~aR~~s~vlrp~~~~~----~~~~~~~~~~~s~r~~~s~~~~ 467 (732)
.+.||..++++|.-+-+++-||-.-.+ -|.|.+|++.-|.+-..|+|-.
T Consensus 89 ~~~~~~~~~~~k~~k~~~~~~p~sps~~e~e~e~e~es~d~rs~nd~gssdpk 141 (982)
T PF03154_consen 89 SESEEPERAAPKKSKTQELSRPNSPSESEGEGEGEGESSDGRSVNDDGSSDPK 141 (982)
T ss_pred cccccccccccccCCcccCCCCCCCccccccccCcccccccccccccCCCCcc
Confidence 456777888888888888888876552 4456667776677766777653
No 25
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=37.54 E-value=30 Score=36.71 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhheeeeecCCCCC
Q 004755 45 ALFATYSPVALLVFILYVRCTAINPADPG 73 (732)
Q Consensus 45 i~i~vys~L~l~V~~LYirct~iDPaDPG 73 (732)
|+++|..++++.++-||-.|-..||.+|-
T Consensus 195 IaliVitl~vf~LvgLyr~C~k~dPg~p~ 223 (259)
T PF07010_consen 195 IALIVITLSVFTLVGLYRMCWKTDPGTPE 223 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Confidence 34445566777888899999988776663
No 26
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=34.91 E-value=2.5e+02 Score=32.37 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=22.8
Q ss_pred CccccccccccccCCCcCCCCCCccccCCCcc
Q 004755 180 DALFCTLCNAEVRRFSKHCRSCDKCVDGFDHH 211 (732)
Q Consensus 180 ~~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHH 211 (732)
...-|+.|+.-.+....||..|+.-..+..++
T Consensus 220 ~l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~ 251 (419)
T PRK15103 220 GLRSCSCCTAILPADQPVCPRCHTKGYVRRRN 251 (419)
T ss_pred CCCcCCCCCCCCCCCCCCCCCCCCcCcCCCCC
Confidence 45569999987776666788888776554443
No 27
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=33.76 E-value=18 Score=30.52 Aligned_cols=36 Identities=28% Similarity=0.750 Sum_probs=26.9
Q ss_pred ccccccccccCCC-------cCCCCCCccccCC-Ccccccccccccc
Q 004755 183 FCTLCNAEVRRFS-------KHCRSCDKCVDGF-DHHCRWLNNCVGH 221 (732)
Q Consensus 183 yC~~C~~~kP~RS-------kHCr~CnrCV~rF-DHHCpWLnNCVG~ 221 (732)
-|..|+...|+-+ .-|..|..|+..+ +++|| ||=|.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 3666666666554 5688999999988 99999 77664
No 28
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.53 E-value=22 Score=39.87 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=13.8
Q ss_pred CccchhhhHhHHHHHhhhheeeEecccc
Q 004755 10 PAHTFQVVAITVFCLLVVAFYAFFAPFL 37 (732)
Q Consensus 10 PlH~lQVVai~Vf~lL~vafYvf~aPfL 37 (732)
|++.+-+..+++.++|++..|=+.-+++
T Consensus 187 ~~~~~vl~~~fvl~tlaivLFPLWP~~m 214 (372)
T KOG2927|consen 187 PLMWQVLGVLFVLVTLAIVLFPLWPRRM 214 (372)
T ss_pred chhHHHHHHHHHHHHHHHHhcccCcHHH
Confidence 4454444555555555555554444443
No 29
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=30.29 E-value=11 Score=40.48 Aligned_cols=32 Identities=25% Similarity=0.677 Sum_probs=26.7
Q ss_pred CCCCCccccccccccccCCCcCCCCCCccccC
Q 004755 176 GNGDDALFCTLCNAEVRRFSKHCRSCDKCVDG 207 (732)
Q Consensus 176 ~~~~~~~yC~~C~~~kP~RSkHCr~CnrCV~r 207 (732)
+.++..+||..|.+++...-.||..|+.|..+
T Consensus 199 ~~EE~~~~~~~~~~Yv~~~~~H~~~~~S~~~~ 230 (325)
T KOG4399|consen 199 PTEEGYRFCSPCQRYVSLENQHCEHCNSCTSK 230 (325)
T ss_pred ccccceEEEeehHHHHHHHhhhchhhcccccc
Confidence 34567889999999999999999999888754
No 30
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=28.98 E-value=18 Score=41.51 Aligned_cols=28 Identities=29% Similarity=0.765 Sum_probs=21.4
Q ss_pred CCCccccccccccc--cCCCcCCCCCCccc
Q 004755 178 GDDALFCTLCNAEV--RRFSKHCRSCDKCV 205 (732)
Q Consensus 178 ~~~~~yC~~C~~~k--P~RSkHCr~CnrCV 205 (732)
+....+|..|...= ..|-|||+.||+-+
T Consensus 177 Ds~V~~CP~Ca~~F~l~rRrHHCRLCG~Vm 206 (505)
T KOG1842|consen 177 DSSVQFCPECANSFGLTRRRHHCRLCGRVM 206 (505)
T ss_pred CCcccccccccchhhhHHHhhhhhhcchHH
Confidence 35678999997543 46899999999844
No 31
>PF12773 DZR: Double zinc ribbon
Probab=28.87 E-value=40 Score=26.61 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=22.3
Q ss_pred CCCccccccccccccCCCcCCCCCC
Q 004755 178 GDDALFCTLCNAEVRRFSKHCRSCD 202 (732)
Q Consensus 178 ~~~~~yC~~C~~~kP~RSkHCr~Cn 202 (732)
.....+|..|....++.+++|..|+
T Consensus 26 ~~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 26 DQSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred cCCCCCCcCCcCCCcCCcCccCccc
Confidence 4567899999999999999999986
No 32
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=28.24 E-value=31 Score=40.32 Aligned_cols=46 Identities=30% Similarity=0.656 Sum_probs=33.3
Q ss_pred CCCCccccccccccccC--------CCc-CCCCCCccccC-----CCc---------------------ccccccccccc
Q 004755 177 NGDDALFCTLCNAEVRR--------FSK-HCRSCDKCVDG-----FDH---------------------HCRWLNNCVGH 221 (732)
Q Consensus 177 ~~~~~~yC~~C~~~kP~--------RSk-HCr~CnrCV~r-----FDH---------------------HCpWLnNCVG~ 221 (732)
.+.+..||..|...+|. |+. +|-.|-.|..- -|+ ||.|--..||.
T Consensus 22 ~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~C~~C~Wss~~igi 101 (483)
T PF05502_consen 22 EEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVRASDTPPSPPDPSSDSGGKPYYLSCSYCRWSSRDIGI 101 (483)
T ss_pred cccceeECccccccCChhhheeccceeccccccCCCCCCcceeEecccccccccccccCCCCCEEEECCCceeeccccCc
Confidence 34678999999877763 664 88888888632 232 78888888887
Q ss_pred c
Q 004755 222 K 222 (732)
Q Consensus 222 r 222 (732)
.
T Consensus 102 ~ 102 (483)
T PF05502_consen 102 K 102 (483)
T ss_pred c
Confidence 5
No 33
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=28.07 E-value=34 Score=28.38 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=17.5
Q ss_pred CCccccccccccccCCCcCCCC--CCcc
Q 004755 179 DDALFCTLCNAEVRRFSKHCRS--CDKC 204 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~--CnrC 204 (732)
-+...|..|...-|+++..|+. |+.+
T Consensus 15 ~~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 15 CDKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp TS-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred ccceecccccCcCCCCccceecccCCCC
Confidence 4567999999999999999998 7754
No 34
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=27.11 E-value=4e+02 Score=30.57 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=19.6
Q ss_pred Cccccccccccc-cCCCcCCCCCCccccCCCcc
Q 004755 180 DALFCTLCNAEV-RRFSKHCRSCDKCVDGFDHH 211 (732)
Q Consensus 180 ~~~yC~~C~~~k-P~RSkHCr~CnrCV~rFDHH 211 (732)
...-|+.|+... +....||..|+.-..+..++
T Consensus 214 ~~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~ 246 (403)
T TIGR00155 214 KLRSCSACHTTILPAQEPVCPRCSTPLYVRRRN 246 (403)
T ss_pred CCCcCCCCCCccCCCCCcCCcCCCCcccCCCCC
Confidence 455699999744 33445677777766554443
No 35
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=27.10 E-value=1.6e+02 Score=27.11 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCcchHHHH
Q 004755 275 PFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYV 315 (732)
Q Consensus 275 ~f~ivv~l~~lLsll~~i~Lg~L~~fHlyLI~kN~TTyE~I 315 (732)
++..+-+++++++++ .+.++++|.+|--+++-+++|.+
T Consensus 44 ~wRalSii~FIlG~v---l~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 44 VWRALSVTCFIVGAV---LLLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHhcccCCCceeecc
Confidence 344455556555543 33447888888877777777544
No 36
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.59 E-value=24 Score=29.60 Aligned_cols=28 Identities=32% Similarity=0.752 Sum_probs=13.4
Q ss_pred CCccccccccccc--cCCCcCCCCCCcccc
Q 004755 179 DDALFCTLCNAEV--RRFSKHCRSCDKCVD 206 (732)
Q Consensus 179 ~~~~yC~~C~~~k--P~RSkHCr~CnrCV~ 206 (732)
.+...|..|...= -.|-|||+.|++.|=
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVC 36 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEEC
Confidence 3456788886443 368899999998653
No 37
>PRK05978 hypothetical protein; Provisional
Probab=25.87 E-value=3.9e+02 Score=26.76 Aligned_cols=90 Identities=19% Similarity=0.416 Sum_probs=0.0
Q ss_pred ccccccccc-----CCCcCCCCCCccccCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHhheeeeEEeecCcc
Q 004755 184 CTLCNAEVR-----RFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYVTFISLMAISLVWLVIEAGVGIAVLVRCFVNKKS 258 (732)
Q Consensus 184 C~~C~~~kP-----~RSkHCr~CnrCV~rFDHHCpWLnNCVG~rNyr~Filfl~~all~lii~~~v~i~vli~~~~~~~~ 258 (732)
|..|..-+- +=..+|+.|+- +|.|| =..-+..|+..++...+.....+++-+.+
T Consensus 36 CP~CG~G~LF~g~Lkv~~~C~~CG~---~~~~~--------~a~DgpAy~~i~ivg~ivv~~~l~~~~~~---------- 94 (148)
T PRK05978 36 CPACGEGKLFRAFLKPVDHCAACGE---DFTHH--------RADDLPAYLVIVIVGHIVVGGFMGTETTF---------- 94 (148)
T ss_pred CCCCCCCcccccccccCCCccccCC---ccccC--------CccccCcchhHHHHHHHHHHHHHHHHHHc----------
Q ss_pred hhHHHHhhhcCCCCCchhHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHcC
Q 004755 259 METEIIDRLGDGFSRAPFATVVAICTAVSMLACIPL-----GELFFFHMILIRKG 308 (732)
Q Consensus 259 ~~~~i~~~Lg~~~s~~~f~ivv~l~~lLsll~~i~L-----g~L~~fHlyLI~kN 308 (732)
..+....+++.+.+++++++++ |.+...+...-..|
T Consensus 95 --------------~pp~w~~~~i~~~l~lil~L~LL~p~KG~lv~lqw~~~~~g 135 (148)
T PRK05978 95 --------------NLPVWLHLAIWLPITLIASLALLQPIKGAVIGLQWALRMHG 135 (148)
T ss_pred --------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 38
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=25.21 E-value=28 Score=33.87 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCCCCccccccccccccCCCcCCCCCCccccCC
Q 004755 176 GNGDDALFCTLCNAEVRRFSKHCRSCDKCVDGF 208 (732)
Q Consensus 176 ~~~~~~~yC~~C~~~kP~RSkHCr~CnrCV~rF 208 (732)
..+........|... ..+||..|..|+.|+
T Consensus 135 ~~g~~~~~s~sC~~~---~~~~CG~C~~C~~r~ 164 (169)
T cd01995 135 ELGVPLELTWSCYNG---GEKHCGECDSCLLRK 164 (169)
T ss_pred HcCCChhheeeccCC---CCCCCCCCHHHHHHH
Confidence 334455566777655 338999999999863
No 39
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=24.65 E-value=33 Score=36.60 Aligned_cols=12 Identities=25% Similarity=0.080 Sum_probs=9.5
Q ss_pred ccCCCccccccc
Q 004755 205 VDGFDHHCRWLN 216 (732)
Q Consensus 205 V~rFDHHCpWLn 216 (732)
..+.+|||||..
T Consensus 38 rsye~H~Cp~~~ 49 (250)
T KOG3183|consen 38 RSYESHHCPKGL 49 (250)
T ss_pred chHhhcCCCccc
Confidence 356799999986
No 40
>COG4640 Predicted membrane protein [Function unknown]
Probab=24.34 E-value=34 Score=38.93 Aligned_cols=42 Identities=14% Similarity=0.369 Sum_probs=30.8
Q ss_pred ccccccccccccCCCcCCCCCCccccCCCcccc-ccccccccc
Q 004755 181 ALFCTLCNAEVRRFSKHCRSCDKCVDGFDHHCR-WLNNCVGHK 222 (732)
Q Consensus 181 ~~yC~~C~~~kP~RSkHCr~CnrCV~rFDHHCp-WLnNCVG~r 222 (732)
++||..|...+-+.+..|..|+.=+..+--.-. -+|+-+-.+
T Consensus 1 M~fC~kcG~qk~Ed~~qC~qCG~~~t~~~sqan~~tn~i~~tr 43 (465)
T COG4640 1 MKFCPKCGSQKAEDDVQCTQCGHKFTSRQSQANKSTNEIIQTR 43 (465)
T ss_pred CCcccccccccccccccccccCCcCCchhhhhhHHHHHHHHhh
Confidence 479999999999999999999987776654333 455555444
No 41
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=24.30 E-value=38 Score=30.72 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.7
Q ss_pred ccccccccccc
Q 004755 210 HHCRWLNNCVG 220 (732)
Q Consensus 210 HHCpWLnNCVG 220 (732)
.||||+|.-..
T Consensus 56 ~~CPwv~~~~q 66 (91)
T PF08600_consen 56 EYCPWVNPSTQ 66 (91)
T ss_pred ccCCccCCccc
Confidence 58999998653
No 42
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=23.43 E-value=3.6e+02 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=20.0
Q ss_pred CCccccccccccc--c----CCCcCCCCCCccccCCCcc
Q 004755 179 DDALFCTLCNAEV--R----RFSKHCRSCDKCVDGFDHH 211 (732)
Q Consensus 179 ~~~~yC~~C~~~k--P----~RSkHCr~CnrCV~rFDHH 211 (732)
.+..-|+.|+.-. | ...-+|..|+.-..+.+++
T Consensus 11 ~~~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~ 49 (403)
T TIGR00155 11 AKHILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDW 49 (403)
T ss_pred CCeeeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCC
Confidence 3345699998544 2 2234588888777665544
No 43
>PF11289 DUF3092: Protein of unknown function (DUF3092); InterPro: IPR024407 This family of SARS coronavirus proteins includes Orf3/3a, which form homotetrameric potassium sensitive ion channels (viroporin) and may modulate virus release. They have also been shown to up-regulate expression of fibrinogen subunits FGA, FGB and FGG in host lung epithelial cells [, , ].
Probab=21.99 E-value=96 Score=32.70 Aligned_cols=47 Identities=23% Similarity=0.208 Sum_probs=34.4
Q ss_pred eeEecccccchhhHHHHHHHHHHHHHHHHHhhheeeeecC--CCCCccc
Q 004755 30 YAFFAPFLGGHIWEYALFATYSPVALLVFILYVRCTAINP--ADPGIMS 76 (732)
Q Consensus 30 Yvf~aPfLg~~~~~yi~i~vys~L~l~V~~LYirct~iDP--aDPGV~~ 76 (732)
-..-+|||--..+.|++.+++.--+++=..|-|+|...+| .|.+.+-
T Consensus 99 a~lE~~fLyl~aliy~lq~~~~~r~~~RcwLcwkC~SknPLlyD~NyFV 147 (273)
T PF11289_consen 99 AGLEAPFLYLYALIYFLQCVSFCRIIMRCWLCWKCKSKNPLLYDANYFV 147 (273)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCceeecCceEE
Confidence 3456777766566667777776677777889999999999 6776654
No 44
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=21.70 E-value=6.8e+02 Score=24.93 Aligned_cols=45 Identities=11% Similarity=0.278 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHcCcchHHHHHH
Q 004755 273 RAPFATVVAICTAVSMLACIPLGEL-FFFHMILIRKGITTYEYVVA 317 (732)
Q Consensus 273 ~~~f~ivv~l~~lLsll~~i~Lg~L-~~fHlyLI~kN~TTyE~I~~ 317 (732)
...+.++.-+|.+++-+.++++..+ .++-+.-+.--++--|+++.
T Consensus 63 k~vwyi~mpVcsllsPllsLM~fI~gtL~~lrrvsgcisik~w~~~ 108 (164)
T PF10624_consen 63 KGVWYILMPVCSLLSPLLSLMVFIIGTLYELRRVSGCISIKEWMQS 108 (164)
T ss_pred cceEEeeecHHHHHhHHHHHHHHHHHHHHHHHHhhcceeHHHHHHH
Confidence 3334445556666665444332221 23334444455666666654
No 45
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=21.47 E-value=22 Score=29.17 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=21.1
Q ss_pred CccccccccccccCCCcCCCCCCc
Q 004755 180 DALFCTLCNAEVRRFSKHCRSCDK 203 (732)
Q Consensus 180 ~~~yC~~C~~~kP~RSkHCr~Cnr 203 (732)
..+.|..|.+.-|+++.-|+.|+.
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccC
Confidence 457899999999999999998864
No 46
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=1.5e+02 Score=26.30 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=15.6
Q ss_pred hhhHhHHHHHhhhheeeEecccccc
Q 004755 15 QVVAITVFCLLVVAFYAFFAPFLGG 39 (732)
Q Consensus 15 QVVai~Vf~lL~vafYvf~aPfLg~ 39 (732)
.+|.|.+-..+-+.++++..||+..
T Consensus 11 ~lv~iSl~iFtYYT~WViilPFvDs 35 (81)
T KOG3488|consen 11 MLVYISLAIFTYYTIWVIILPFVDS 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccch
Confidence 3444444444456677888999764
Done!