Query 004755
Match_columns 732
No_of_seqs 294 out of 1373
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 50.4 6.9 0.00024 31.1 1.8 27 179-205 12-38 (51)
2 2ayj_A 50S ribosomal protein L 49.8 8.4 0.00029 31.2 2.2 26 179-204 17-42 (56)
3 1x4u_A Zinc finger, FYVE domai 44.0 11 0.00037 32.2 2.2 27 179-205 12-40 (84)
4 1joc_A EEA1, early endosomal a 38.4 11 0.00037 34.7 1.4 27 179-205 67-95 (125)
5 1z2q_A LM5-1; membrane protein 36.5 16 0.00054 31.2 2.1 27 179-205 19-47 (84)
6 1wfk_A Zinc finger, FYVE domai 35.5 16 0.00055 31.6 2.0 27 179-205 7-35 (88)
7 2yw8_A RUN and FYVE domain-con 34.0 19 0.00065 30.6 2.2 28 179-206 17-46 (82)
8 1dvp_A HRS, hepatocyte growth 33.2 14 0.00048 36.7 1.4 25 182-206 162-188 (220)
9 1vfy_A Phosphatidylinositol-3- 30.7 16 0.00055 30.3 1.1 23 183-205 13-37 (73)
10 3t7l_A Zinc finger FYVE domain 27.1 22 0.00075 30.8 1.4 26 180-205 19-46 (90)
11 3zyq_A Hepatocyte growth facto 25.3 23 0.00079 35.5 1.4 25 182-206 165-191 (226)
12 2vrw_B P95VAV, VAV1, proto-onc 25.0 24 0.00081 37.8 1.5 29 179-207 355-386 (406)
13 1wv8_A TT1413, hypothetical pr 24.4 28 0.00097 29.5 1.5 15 595-609 7-21 (73)
14 1y02_A CARP2, FYVE-ring finger 20.9 30 0.001 31.8 1.1 26 180-205 18-45 (120)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.43 E-value=6.9 Score=31.07 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.6
Q ss_pred CCccccccccccccCCCcCCCCCCccc
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKCV 205 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrCV 205 (732)
-....|..|....+.++..|+.|+.--
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~ 38 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKR 38 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCC
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcc
Confidence 467789999999999999999998753
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=49.84 E-value=8.4 Score=31.20 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.9
Q ss_pred CCccccccccccccCCCcCCCCCCcc
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDKC 204 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~CnrC 204 (732)
-....|..|.+.-|+++..|+.|+..
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred hchhhhccccCcCCcccccccCCCCC
Confidence 46779999999999999999988754
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.95 E-value=11 Score=32.18 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=19.5
Q ss_pred CCcccccccccc--ccCCCcCCCCCCccc
Q 004755 179 DDALFCTLCNAE--VRRFSKHCRSCDKCV 205 (732)
Q Consensus 179 ~~~~yC~~C~~~--kP~RSkHCr~CnrCV 205 (732)
.+...|..|... .-.|-|||+.|++-+
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 455678888753 346889999998744
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.39 E-value=11 Score=34.72 Aligned_cols=27 Identities=26% Similarity=0.653 Sum_probs=19.5
Q ss_pred CCcccccccccc--ccCCCcCCCCCCccc
Q 004755 179 DDALFCTLCNAE--VRRFSKHCRSCDKCV 205 (732)
Q Consensus 179 ~~~~yC~~C~~~--kP~RSkHCr~CnrCV 205 (732)
.....|..|... ...|-|||+.||+-|
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEE
Confidence 345678888754 346889999999744
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=36.49 E-value=16 Score=31.17 Aligned_cols=27 Identities=30% Similarity=0.652 Sum_probs=19.3
Q ss_pred CCccccccccccc--cCCCcCCCCCCccc
Q 004755 179 DDALFCTLCNAEV--RRFSKHCRSCDKCV 205 (732)
Q Consensus 179 ~~~~yC~~C~~~k--P~RSkHCr~CnrCV 205 (732)
.+...|..|...= -.|-|||+.|++-+
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEE
Confidence 4456788887542 35889999998854
No 6
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.48 E-value=16 Score=31.60 Aligned_cols=27 Identities=15% Similarity=0.423 Sum_probs=19.5
Q ss_pred CCcccccccccc--ccCCCcCCCCCCccc
Q 004755 179 DDALFCTLCNAE--VRRFSKHCRSCDKCV 205 (732)
Q Consensus 179 ~~~~yC~~C~~~--kP~RSkHCr~CnrCV 205 (732)
.+...|..|... .-.|-|||+.|++-+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEE
Confidence 455678888753 346889999999844
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.98 E-value=19 Score=30.57 Aligned_cols=28 Identities=36% Similarity=0.796 Sum_probs=20.0
Q ss_pred CCccccccccccc--cCCCcCCCCCCcccc
Q 004755 179 DDALFCTLCNAEV--RRFSKHCRSCDKCVD 206 (732)
Q Consensus 179 ~~~~yC~~C~~~k--P~RSkHCr~CnrCV~ 206 (732)
.+...|..|...= -.|-|||+.||+-+-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFC 46 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEC
Confidence 4556788887533 358899999998543
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.15 E-value=14 Score=36.74 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=18.2
Q ss_pred ccccccccc--ccCCCcCCCCCCcccc
Q 004755 182 LFCTLCNAE--VRRFSKHCRSCDKCVD 206 (732)
Q Consensus 182 ~yC~~C~~~--kP~RSkHCr~CnrCV~ 206 (732)
..|..|... .-.|-|||+.||+.+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccCCCCCccCCcccccccCCcCCEEC
Confidence 578888743 2358899999998554
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.65 E-value=16 Score=30.32 Aligned_cols=23 Identities=30% Similarity=0.826 Sum_probs=16.3
Q ss_pred cccccccc--ccCCCcCCCCCCccc
Q 004755 183 FCTLCNAE--VRRFSKHCRSCDKCV 205 (732)
Q Consensus 183 yC~~C~~~--kP~RSkHCr~CnrCV 205 (732)
.|..|... .-.|-|||+.|++-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 57777643 235789999998844
No 10
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=27.12 E-value=22 Score=30.77 Aligned_cols=26 Identities=31% Similarity=0.758 Sum_probs=18.3
Q ss_pred Ccccccccccc--ccCCCcCCCCCCccc
Q 004755 180 DALFCTLCNAE--VRRFSKHCRSCDKCV 205 (732)
Q Consensus 180 ~~~yC~~C~~~--kP~RSkHCr~CnrCV 205 (732)
+...|..|... .-.|-|||+.|++-+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEE
Confidence 44568888753 245789999998744
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.27 E-value=23 Score=35.50 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=17.2
Q ss_pred ccccccccc--ccCCCcCCCCCCcccc
Q 004755 182 LFCTLCNAE--VRRFSKHCRSCDKCVD 206 (732)
Q Consensus 182 ~yC~~C~~~--kP~RSkHCr~CnrCV~ 206 (732)
..|..|... .-.|-|||+.|++.+-
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFC 191 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCCcCcCCCCCccccccccCCCcCEeC
Confidence 368888632 2357899999998554
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=25.01 E-value=24 Score=37.76 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCccccccccccc---cCCCcCCCCCCccccC
Q 004755 179 DDALFCTLCNAEV---RRFSKHCRSCDKCVDG 207 (732)
Q Consensus 179 ~~~~yC~~C~~~k---P~RSkHCr~CnrCV~r 207 (732)
....+|..|...- -.+-+||+.|+..|.+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 4667999998644 4688999999876654
No 13
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=24.42 E-value=28 Score=29.53 Aligned_cols=15 Identities=40% Similarity=0.838 Sum_probs=12.6
Q ss_pred ceeeccCCCceeeec
Q 004755 595 SVVWDQEAGRYVSVP 609 (732)
Q Consensus 595 sv~wd~~agr~vs~~ 609 (732)
-..||+|||-||...
T Consensus 7 ~~~~Deeagv~vA~s 21 (73)
T 1wv8_A 7 QALWDGEAGVWVAES 21 (73)
T ss_dssp EEEEETTTTEEEEEC
T ss_pred EEEEeCCCCEEEEEC
Confidence 468999999999764
No 14
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.88 E-value=30 Score=31.80 Aligned_cols=26 Identities=23% Similarity=0.430 Sum_probs=17.8
Q ss_pred Ccccccccccc--ccCCCcCCCCCCccc
Q 004755 180 DALFCTLCNAE--VRRFSKHCRSCDKCV 205 (732)
Q Consensus 180 ~~~yC~~C~~~--kP~RSkHCr~CnrCV 205 (732)
....|..|... ...|-|||+.||+.+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred ccCcccCcCCccccccccccCCCCCCee
Confidence 34578888753 346889999999844
Done!