Query 004755
Match_columns 732
No_of_seqs 294 out of 1373
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 04:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004755.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004755hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 56.3 2.2 0.00016 32.6 1.7 25 179-203 17-41 (56)
2 d2dmda2 g.37.1.1 (A:8-33) Zinc 50.7 1.8 0.00013 27.7 0.3 15 196-210 2-16 (26)
3 d1joca1 g.50.1.1 (A:1348-1411) 44.8 3.8 0.00028 31.5 1.5 27 180-206 7-35 (64)
4 d1vfya_ g.50.1.1 (A:) vps27p p 38.7 4.7 0.00034 31.2 1.1 24 183-206 7-32 (67)
5 d2dkta2 g.93.1.1 (A:82-137) RI 35.7 2.9 0.00021 31.9 -0.5 30 183-212 22-54 (56)
6 d1wfka_ g.50.1.1 (A:) Zinc fin 35.5 7.2 0.00053 31.8 1.9 28 179-206 7-36 (88)
7 d2dkta2 g.93.1.1 (A:82-137) RI 33.6 6 0.00044 30.1 0.9 41 181-221 2-46 (56)
8 d1dvpa2 g.50.1.1 (A:149-220) H 32.8 8.2 0.00059 30.3 1.7 24 183-206 15-40 (72)
9 d1wv8a1 d.304.1.1 (A:2-72) Hyp 31.7 7.8 0.00057 30.7 1.4 16 594-609 5-20 (71)
10 d2pg3a1 c.26.2.1 (A:1-230) Que 29.9 5 0.00036 36.8 -0.1 25 181-207 182-206 (230)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=56.30 E-value=2.2 Score=32.56 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.0
Q ss_pred CCccccccccccccCCCcCCCCCCc
Q 004755 179 DDALFCTLCNAEVRRFSKHCRSCDK 203 (732)
Q Consensus 179 ~~~~yC~~C~~~kP~RSkHCr~Cnr 203 (732)
-....|..|.+.-|+|+..|+.|+.
T Consensus 17 ~~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 17 FLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhhHHHhhccccCCccccccccCCC
Confidence 4677999999999999999997764
No 2
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.72 E-value=1.8 Score=27.75 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=12.5
Q ss_pred cCCCCCCccccCCCc
Q 004755 196 KHCRSCDKCVDGFDH 210 (732)
Q Consensus 196 kHCr~CnrCV~rFDH 210 (732)
|-|.+|++|..+-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 569999999988763
No 3
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.85 E-value=3.8 Score=31.48 Aligned_cols=27 Identities=26% Similarity=0.587 Sum_probs=18.9
Q ss_pred Ccccccccccc--ccCCCcCCCCCCcccc
Q 004755 180 DALFCTLCNAE--VRRFSKHCRSCDKCVD 206 (732)
Q Consensus 180 ~~~yC~~C~~~--kP~RSkHCr~CnrCV~ 206 (732)
+..-|..|... .-.|-|||+.|++.|=
T Consensus 7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 7 EVQNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred cCCcCcCcCCcccCCccccchhhhCCeec
Confidence 34568888652 3457899999998653
No 4
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.73 E-value=4.7 Score=31.24 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=17.0
Q ss_pred ccccccc--cccCCCcCCCCCCcccc
Q 004755 183 FCTLCNA--EVRRFSKHCRSCDKCVD 206 (732)
Q Consensus 183 yC~~C~~--~kP~RSkHCr~CnrCV~ 206 (732)
-|..|.. ..-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 3777765 23468899999998554
No 5
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.74 E-value=2.9 Score=31.94 Aligned_cols=30 Identities=27% Similarity=0.728 Sum_probs=19.6
Q ss_pred ccccccccccCCCcCCCCCCccccC--CC-ccc
Q 004755 183 FCTLCNAEVRRFSKHCRSCDKCVDG--FD-HHC 212 (732)
Q Consensus 183 yC~~C~~~kP~RSkHCr~CnrCV~r--FD-HHC 212 (732)
.|..|++=..+.-.||..|+-|+.. +| |.|
T Consensus 22 ~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~C 54 (56)
T d2dkta2 22 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 54 (56)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCC
T ss_pred CCCceeecCCccccccCccccccCcccCCCccc
Confidence 3555555556677888888888854 33 555
No 6
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.52 E-value=7.2 Score=31.85 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=20.0
Q ss_pred CCccccccccc--cccCCCcCCCCCCcccc
Q 004755 179 DDALFCTLCNA--EVRRFSKHCRSCDKCVD 206 (732)
Q Consensus 179 ~~~~yC~~C~~--~kP~RSkHCr~CnrCV~ 206 (732)
+....|..|.. ....|-|||+.|++.+=
T Consensus 7 ~~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC 36 (88)
T d1wfka_ 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEE
T ss_pred cccCcCcccCchhccccccccccccChhhC
Confidence 44557888875 33567899999998543
No 7
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.61 E-value=6 Score=30.15 Aligned_cols=41 Identities=29% Similarity=0.711 Sum_probs=31.2
Q ss_pred cccccccccccc-CCCcCCCCCCccccCCC---cccccccccccc
Q 004755 181 ALFCTLCNAEVR-RFSKHCRSCDKCVDGFD---HHCRWLNNCVGH 221 (732)
Q Consensus 181 ~~yC~~C~~~kP-~RSkHCr~CnrCV~rFD---HHCpWLnNCVG~ 221 (732)
..||.+|+.+-- +...||..|+-|-.+-. -||.--|.|+..
T Consensus 2 ~YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 2 EYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp SEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ceECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCc
Confidence 358899987743 34679999999986632 499999999865
No 8
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=32.76 E-value=8.2 Score=30.28 Aligned_cols=24 Identities=29% Similarity=0.769 Sum_probs=17.8
Q ss_pred cccccccc--ccCCCcCCCCCCcccc
Q 004755 183 FCTLCNAE--VRRFSKHCRSCDKCVD 206 (732)
Q Consensus 183 yC~~C~~~--kP~RSkHCr~CnrCV~ 206 (732)
.|..|... .-.|-|||+.|++.+-
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccccCCCcccCccccccccccCCeeC
Confidence 58888753 3468899999998654
No 9
>d1wv8a1 d.304.1.1 (A:2-72) Hypothetical protein TTHA1013 {Thermus thermophilus [TaxId: 274]}
Probab=31.72 E-value=7.8 Score=30.68 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=13.2
Q ss_pred cceeeccCCCceeeec
Q 004755 594 TSVVWDQEAGRYVSVP 609 (732)
Q Consensus 594 ~sv~wd~~agr~vs~~ 609 (732)
...+||.|||-+|--.
T Consensus 5 V~a~WD~EAgVWva~s 20 (71)
T d1wv8a1 5 VQALWDGEAGVWVAES 20 (71)
T ss_dssp EEEEEETTTTEEEEEC
T ss_pred EEEEEcccCCEEEEEc
Confidence 4579999999999654
No 10
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=29.94 E-value=5 Score=36.77 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=19.6
Q ss_pred ccccccccccccCCCcCCCCCCccccC
Q 004755 181 ALFCTLCNAEVRRFSKHCRSCDKCVDG 207 (732)
Q Consensus 181 ~~yC~~C~~~kP~RSkHCr~CnrCV~r 207 (732)
......| +.+.+.+||..|..|+.|
T Consensus 182 ~~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 182 RYHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hhccCCC--CCCCCCCCCCCCHhHHHH
Confidence 3455566 567788999999999987
Done!