BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004760
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 598 LSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657
L ++ ++ +L+ VA L + +D+ ++ S+ E+FG V +EAMA GVP +GT
Sbjct: 259 LVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRV 316
Query: 658 GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHM 717
GG E+++H TG L G +A LLK+ + M R+ V + + +
Sbjct: 317 GGIPEVIQHGDTGYLCEVGDTTG--VADQAIQLLKDEELHRNMGERARESVYEQFRSEKI 374
Query: 718 YKKLSQVIYKCMK 730
+ + Y ++
Sbjct: 375 VSQYETIYYDVLR 387
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 598 LSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657
L ++ ++ +L+ VA L + +D+ ++ S+ E+FG V +EAMA GVP +GT
Sbjct: 279 LVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRV 336
Query: 658 GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHM 717
GG E+++H TG L G +A LLK+ + M R+ V + + +
Sbjct: 337 GGIPEVIQHGDTGYLCEVGDTTG--VADQAIQLLKDEELHRNMGERARESVYEQFRSEKI 394
Query: 718 YKKLSQVIYKCMK 730
+ + Y ++
Sbjct: 395 VSQYETIYYDVLR 407
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 627 YVINSQG------LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH--P 678
Y+ +++G L E FG +EAM G+P T GG EI+ H +G P H
Sbjct: 660 YICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQ 719
Query: 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMY 712
A LA ++PS + ++ G +++E Y
Sbjct: 720 AADTLADFFTKCKEDPSHWDEISKGGLQRIEEKY 753
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
V + A+DV I + E FG EAM G PV+G GG K + TG L
Sbjct: 309 VNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDA 366
Query: 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMY-LKKHMYKKL 721
+ +V+ YLLK+P V + M + +++V + + + KHM + L
Sbjct: 367 NEAVEVVL----YLLKHPEVSKEMGAKAKERVRKNFIITKHMERYL 408
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 627 YVINSQG------LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH--P 678
Y+ +++G L E FG +EA G+P T GG EI+ H +G P H
Sbjct: 660 YICDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQ 719
Query: 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMY 712
A LA ++PS + ++ G +++E Y
Sbjct: 720 AADTLADFFTKCKEDPSHWDEISKGGLQRIEEKY 753
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
V + A+DV + S G FG EAM G PV+G GG K + TG L
Sbjct: 309 VNAFQRASDVILQMSIRAG--FGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDA 366
Query: 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMY-LKKHMYKKL 721
+ +V+ YLLK+P V + M + +++V + + + KHM + L
Sbjct: 367 NEAVEVVL----YLLKHPEVSKEMGAKAKERVRKNFIITKHMERYL 408
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL-- 672
+ + ++Y AAD+ + S E+FG V +EA A G PV+ GG V TGLL
Sbjct: 297 SELVAVYRAADIVAVPS--FNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVD 354
Query: 673 -HPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVER 710
H P H A LA LL + R RM G VE
Sbjct: 355 GHSP-HAWADALAT----LLDDDETRIRM---GEDAVEH 385
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL-- 672
+ + ++Y AAD+ + S E+FG V +EA A G PV+ GG V TGLL
Sbjct: 317 SELVAVYRAADIVAVPS--FNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVD 374
Query: 673 -HPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVER 710
H P H A LA LL + R RM G VE
Sbjct: 375 GHSP-HAWADALAT----LLDDDETRIRM---GEDAVEH 405
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601
F IG D G L + + S K+ Q ++ +I +G ++ LE +H
Sbjct: 39 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII--IGKGDPELEGWARSLE--EKH 94
Query: 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661
N+ K + + V LY + D +I S E FG V +EAM G + + GG +
Sbjct: 95 GNV-KVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLGAIPIASAVGGLR 151
Query: 662 EIVEHNVTGLLHPPGHPG 679
+I+ N TG+L G PG
Sbjct: 152 DII-TNETGILVKAGDPG 168
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH 677
A L S V+ + S E FG +EAMA G+P + T GG EI++ G+L P
Sbjct: 353 AYLASKGSVFALTS--FYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPED 410
Query: 678 PGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725
P + +A+ L ++ +G+++VE Y + + +VI
Sbjct: 411 P--EDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVI 456
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601
F IG D G L + + S K+ Q ++ +I +G ++ LE +H
Sbjct: 254 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII--IGKGDPELEGWARSLE--EKH 309
Query: 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661
N+ K + + V LY + D +I S E FG V +EAM G + + GG +
Sbjct: 310 GNV-KVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLGAIPIASAVGGLR 366
Query: 662 EIVEHNVTGLLHPPGHPG 679
+I+ N TG+L G PG
Sbjct: 367 DIIT-NETGILVKAGDPG 383
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601
F IG D G L + + S K+ Q ++ +I +G ++ LE +H
Sbjct: 254 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII--IGKGDPELEGWARSLE--EKH 309
Query: 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661
N+ K + + V LY + D +I S E FG V +EAM G + + GG +
Sbjct: 310 GNV-KVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLGAIPIASAVGGLR 366
Query: 662 EIVEHNVTGLLHPPGHPG 679
+I+ N TG+L G PG
Sbjct: 367 DIIT-NETGILVKAGDPG 383
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601
F IG D G L + + S K+ Q ++ +I +G ++ LE +H
Sbjct: 255 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII--IGKGDPELEGWARSLE--EKH 310
Query: 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661
N+ K + + V LY + D +I S E FG V +EAM G + + GG +
Sbjct: 311 GNV-KVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLGAIPIASAVGGLR 367
Query: 662 EIVEHNVTGLLHPPGHPG 679
+I+ N TG+L G PG
Sbjct: 368 DIIT-NETGILVKAGDPG 384
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
V + A+DV I + E FG EA G PV+G GG K + TG L
Sbjct: 309 VNAFQRASDV--ILQXSIREGFGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGFLVRDA 366
Query: 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMY-LKKHMYKKL 721
+ +V+ YLLK+P V + + +++V + + + KH + L
Sbjct: 367 NEAVEVVL----YLLKHPEVSKEXGAKAKERVRKNFIITKHXERYL 408
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLG 654
L FL Q + +KA S +ADVY G GE+FG V +EAMA G V+
Sbjct: 265 LRFLGQVDDATKA-----------SAMRSADVYCAPHLG-GESFGIVLVEAMAAGTAVVA 312
Query: 655 TDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVER 710
+D + ++ G L P A +A L +L++ +R ++V R
Sbjct: 313 SDLDAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDDQLRAGYVARASERVHR 366
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 636 ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL 672
E FG IEA A G PV+ + GG KE V + TG L
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYL 144
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 622 SAADVYVINSQGLG-----ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
+AAD++ + ++ G E G V +EA A GVPV+ +GG E V TGL+
Sbjct: 271 AAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVT-PATGLV---- 325
Query: 677 HPGAQV--LAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725
G+ V L++ L LL +P R M GR VE + + M ++L+ ++
Sbjct: 326 VEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNIL 376
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 622 SAADVYVINSQGLG-----ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
+AAD++ + ++ G E G V +EA A GVPV+ +GG E V TGL+
Sbjct: 271 AAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVT-PATGLV---- 325
Query: 677 HPGAQV--LAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725
G+ V L++ L LL +P R M GR VE + + M ++L+ ++
Sbjct: 326 VEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNIL 376
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 602 SNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659
++L+K M+ T RV +Y+A DV V S G E FG + E G P++ + GG
Sbjct: 250 THLNKIMINRTVLTDERVDMMYNACDVIVNCSSG--EGFGLCSAEGAVLGKPLIISAVGG 307
Query: 660 TKE 662
+
Sbjct: 308 ADD 310
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Aeropyrum Pernix K1
Length = 297
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 579 GSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAAD----VYVINSQGL 634
G GS+ + VP + E L++H ++ ++++ PA ++Y A D + V+ ++G+
Sbjct: 47 GKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGI 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,028,282
Number of Sequences: 62578
Number of extensions: 714867
Number of successful extensions: 2013
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1994
Number of HSP's gapped (non-prelim): 27
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)