Query 004760
Match_columns 732
No_of_seqs 248 out of 3153
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 6.5E-38 1.4E-42 337.5 39.8 355 242-729 1-374 (374)
2 KOG0853 Glycosyltransferase [C 100.0 3.8E-40 8.3E-45 366.0 20.1 458 172-730 6-470 (495)
3 PRK15179 Vi polysaccharide bio 100.0 7.5E-35 1.6E-39 340.2 37.9 352 244-726 283-692 (694)
4 cd03807 GT1_WbnK_like This fam 100.0 2.2E-34 4.7E-39 298.3 36.0 345 244-726 1-365 (365)
5 cd04962 GT1_like_5 This family 100.0 3E-34 6.5E-39 305.9 35.5 343 244-728 2-371 (371)
6 TIGR02472 sucr_P_syn_N sucrose 100.0 4E-33 8.6E-38 310.6 36.6 354 253-726 24-439 (439)
7 cd03796 GT1_PIG-A_like This fa 100.0 3.6E-33 7.7E-38 305.7 34.7 341 244-730 1-370 (398)
8 cd03819 GT1_WavL_like This fam 100.0 8.2E-33 1.8E-37 292.1 36.2 338 247-717 2-355 (355)
9 TIGR03449 mycothiol_MshA UDP-N 100.0 8.2E-33 1.8E-37 301.4 36.8 344 254-730 19-404 (405)
10 cd03805 GT1_ALG2_like This fam 100.0 2.9E-33 6.3E-38 301.9 32.3 347 243-721 1-392 (392)
11 PRK10307 putative glycosyl tra 100.0 1.6E-32 3.4E-37 301.3 38.0 350 243-731 1-411 (412)
12 PLN02871 UDP-sulfoquinovose:DA 100.0 3.4E-32 7.3E-37 305.1 39.4 341 240-730 56-437 (465)
13 cd04951 GT1_WbdM_like This fam 100.0 4.6E-32 9.9E-37 285.9 37.5 342 244-726 1-359 (360)
14 cd03792 GT1_Trehalose_phosphor 100.0 2.9E-32 6.3E-37 295.0 35.7 343 244-728 1-372 (372)
15 cd03812 GT1_CapH_like This fam 100.0 1.5E-32 3.2E-37 290.4 32.6 328 244-711 1-349 (358)
16 PRK15490 Vi polysaccharide bio 100.0 6.8E-32 1.5E-36 305.3 38.2 348 244-727 163-575 (578)
17 PRK15427 colanic acid biosynth 100.0 3.6E-31 7.8E-36 292.9 35.7 340 244-727 2-405 (406)
18 PRK15484 lipopolysaccharide 1, 100.0 4.2E-31 9.1E-36 289.2 35.8 343 243-729 3-379 (380)
19 TIGR02149 glgA_Coryne glycogen 100.0 1.3E-30 2.8E-35 281.0 38.3 343 244-729 2-388 (388)
20 cd03818 GT1_ExpC_like This fam 100.0 4.8E-31 1E-35 288.5 34.8 341 244-723 1-396 (396)
21 cd03821 GT1_Bme6_like This fam 100.0 1.6E-30 3.4E-35 270.5 35.6 340 244-723 1-375 (375)
22 PLN02316 synthase/transferase 100.0 1.7E-30 3.7E-35 310.6 38.3 357 242-729 587-1035(1036)
23 cd03800 GT1_Sucrose_synthase T 100.0 2.3E-30 5E-35 277.7 34.6 348 243-722 7-397 (398)
24 cd03820 GT1_amsD_like This fam 100.0 2.7E-30 6E-35 265.3 33.7 324 244-722 1-347 (348)
25 cd03825 GT1_wcfI_like This fam 100.0 5.6E-30 1.2E-34 270.5 35.6 323 244-728 2-365 (365)
26 PRK00654 glgA glycogen synthas 100.0 3.4E-30 7.3E-35 289.6 34.9 359 244-730 2-465 (466)
27 PRK14099 glycogen synthase; Pr 100.0 4.1E-30 8.8E-35 291.1 35.1 363 240-730 1-481 (485)
28 PRK09922 UDP-D-galactose:(gluc 100.0 2E-30 4.3E-35 280.4 30.1 334 243-730 1-358 (359)
29 cd03808 GT1_cap1E_like This fa 100.0 1.6E-29 3.4E-34 260.8 33.5 332 244-722 1-358 (359)
30 TIGR02095 glgA glycogen/starch 100.0 7.7E-30 1.7E-34 286.5 33.5 357 244-728 2-473 (473)
31 cd05844 GT1_like_7 Glycosyltra 100.0 6.5E-30 1.4E-34 272.2 31.0 329 246-723 2-366 (367)
32 cd03811 GT1_WabH_like This fam 100.0 1.8E-29 3.8E-34 259.2 33.0 329 244-713 1-352 (353)
33 cd03795 GT1_like_4 This family 100.0 2.2E-29 4.7E-34 265.2 34.3 331 244-718 1-357 (357)
34 cd03802 GT1_AviGT4_like This f 100.0 9.3E-30 2E-34 266.7 30.5 314 243-726 1-335 (335)
35 cd03822 GT1_ecORF704_like This 100.0 4.3E-29 9.4E-34 261.7 35.2 345 244-726 1-366 (366)
36 PLN02939 transferase, transfer 100.0 3.4E-29 7.5E-34 295.3 37.8 364 242-730 481-969 (977)
37 PRK10125 putative glycosyl tra 100.0 2.4E-29 5.2E-34 278.7 33.4 323 244-728 2-405 (405)
38 cd03814 GT1_like_2 This family 100.0 4.1E-29 9E-34 261.1 33.1 332 244-726 1-364 (364)
39 cd04955 GT1_like_6 This family 100.0 8.3E-29 1.8E-33 261.9 34.6 332 244-726 1-363 (363)
40 TIGR02468 sucrsPsyn_pln sucros 100.0 7E-29 1.5E-33 296.3 37.5 367 254-730 194-673 (1050)
41 cd03801 GT1_YqgM_like This fam 100.0 1.9E-28 4.1E-33 251.6 35.4 342 244-726 1-374 (374)
42 cd03791 GT1_Glycogen_synthase_ 100.0 2.8E-29 6E-34 280.6 31.2 357 244-726 1-475 (476)
43 cd03794 GT1_wbuB_like This fam 100.0 1.3E-28 2.8E-33 256.6 33.1 339 244-722 1-394 (394)
44 cd03799 GT1_amsK_like This is 100.0 9.3E-29 2E-33 260.2 30.6 331 244-721 1-355 (355)
45 cd03817 GT1_UGDG_like This fam 100.0 7.5E-28 1.6E-32 250.9 36.8 338 244-727 1-373 (374)
46 TIGR02470 sucr_synth sucrose s 100.0 5.4E-28 1.2E-32 283.6 38.2 412 211-725 219-745 (784)
47 cd03823 GT1_ExpE7_like This fa 100.0 8.2E-28 1.8E-32 250.3 34.9 327 244-726 1-358 (359)
48 PRK14098 glycogen synthase; Pr 100.0 6.3E-28 1.4E-32 273.5 34.7 362 243-731 6-489 (489)
49 cd03798 GT1_wlbH_like This fam 100.0 1.4E-27 3E-32 246.8 34.1 342 245-728 1-377 (377)
50 cd03816 GT1_ALG1_like This fam 100.0 2.2E-27 4.8E-32 263.0 36.8 347 243-722 4-411 (415)
51 cd03809 GT1_mtfB_like This fam 100.0 1.4E-27 3E-32 250.3 28.6 333 244-723 1-365 (365)
52 cd03806 GT1_ALG11_like This fa 100.0 3.8E-27 8.3E-32 261.8 31.7 337 244-719 2-418 (419)
53 cd03813 GT1_like_3 This family 100.0 2E-27 4.3E-32 267.8 28.6 275 310-726 172-475 (475)
54 PLN02949 transferase, transfer 100.0 5.9E-27 1.3E-31 264.0 31.8 348 241-730 32-459 (463)
55 TIGR03087 stp1 sugar transfera 100.0 1.3E-26 2.8E-31 253.9 30.5 332 245-728 1-397 (397)
56 PLN02846 digalactosyldiacylgly 100.0 3.2E-26 6.9E-31 257.0 29.8 330 241-728 3-392 (462)
57 PLN00142 sucrose synthase 100.0 4.8E-26 1E-30 267.5 32.5 224 404-725 521-768 (815)
58 TIGR02918 accessory Sec system 99.9 1.7E-25 3.7E-30 254.3 29.3 226 359-728 268-500 (500)
59 cd03804 GT1_wbaZ_like This fam 99.9 1.9E-25 4E-30 238.8 27.1 303 244-721 1-350 (351)
60 cd04946 GT1_AmsK_like This fam 99.9 9.3E-25 2E-29 241.5 29.6 223 357-722 179-406 (407)
61 cd04949 GT1_gtfA_like This fam 99.9 4.7E-25 1E-29 237.2 25.3 262 310-721 98-372 (372)
62 KOG1111 N-acetylglucosaminyltr 99.9 2.4E-25 5.3E-30 236.4 20.8 337 244-730 2-369 (426)
63 PLN02501 digalactosyldiacylgly 99.9 8.3E-24 1.8E-28 242.5 29.4 324 242-725 322-707 (794)
64 PHA01630 putative group 1 glyc 99.9 1.1E-23 2.5E-28 227.9 29.1 220 359-727 92-330 (331)
65 PLN02275 transferase, transfer 99.9 1.7E-23 3.6E-28 228.5 29.6 311 252-691 12-371 (371)
66 cd03793 GT1_Glycogen_synthase_ 99.9 6.9E-24 1.5E-28 240.7 22.5 330 362-730 227-589 (590)
67 PRK00726 murG undecaprenyldiph 99.9 3.1E-22 6.6E-27 215.7 27.6 322 243-726 2-356 (357)
68 PRK05749 3-deoxy-D-manno-octul 99.9 2.3E-21 5.1E-26 214.6 33.0 351 247-730 53-422 (425)
69 PHA01633 putative glycosyl tra 99.9 4.1E-22 8.8E-27 216.1 25.8 226 355-723 86-335 (335)
70 cd03785 GT1_MurG MurG is an N- 99.9 1.5E-21 3.2E-26 208.5 26.7 312 248-718 3-348 (350)
71 PF00534 Glycos_transf_1: Glyc 99.9 8.4E-22 1.8E-26 189.9 17.7 168 430-707 2-172 (172)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.9 5.8E-21 1.3E-25 215.2 25.0 305 311-725 131-459 (460)
73 TIGR01133 murG undecaprenyldip 99.9 2E-20 4.2E-25 199.7 26.8 310 244-718 2-345 (348)
74 TIGR02400 trehalose_OtsA alpha 99.9 3.3E-20 7.2E-25 209.0 30.0 257 362-726 184-455 (456)
75 PRK13609 diacylglycerol glucos 99.8 7.5E-18 1.6E-22 183.6 27.8 330 241-728 3-372 (380)
76 PLN03063 alpha,alpha-trehalose 99.8 6.5E-18 1.4E-22 201.6 28.8 262 361-729 203-479 (797)
77 COG0297 GlgA Glycogen synthase 99.8 9.6E-17 2.1E-21 181.3 32.6 363 244-731 2-481 (487)
78 PRK14501 putative bifunctional 99.8 1.6E-17 3.4E-22 197.1 25.3 259 362-729 190-464 (726)
79 PLN02605 monogalactosyldiacylg 99.8 3.5E-17 7.6E-22 179.6 24.4 219 360-725 149-379 (382)
80 cd01635 Glycosyltransferase_GT 99.8 3.5E-17 7.7E-22 160.0 20.1 69 603-673 158-229 (229)
81 COG0438 RfaG Glycosyltransfera 99.7 2.8E-16 6.1E-21 158.3 22.3 202 405-731 174-380 (381)
82 PRK13608 diacylglycerol glucos 99.7 3.5E-16 7.6E-21 172.6 24.6 117 603-730 253-374 (391)
83 cd04950 GT1_like_1 Glycosyltra 99.7 8.3E-16 1.8E-20 168.1 24.9 113 606-727 254-371 (373)
84 KOG3742 Glycogen synthase [Car 99.7 9.8E-18 2.1E-22 181.7 7.5 331 362-730 253-615 (692)
85 PRK00025 lpxB lipid-A-disaccha 99.7 4.5E-15 9.8E-20 161.3 24.9 104 615-729 253-375 (380)
86 PF05693 Glycogen_syn: Glycoge 99.7 1.8E-17 3.9E-22 187.9 6.1 330 362-730 222-584 (633)
87 TIGR02398 gluc_glyc_Psyn gluco 99.6 5.8E-14 1.3E-18 159.2 28.5 260 362-727 189-482 (487)
88 PLN03064 alpha,alpha-trehalose 99.6 4.2E-13 9.1E-18 161.2 28.2 266 362-729 288-563 (934)
89 TIGR00236 wecB UDP-N-acetylglu 99.6 2.2E-13 4.7E-18 148.0 22.5 108 603-726 252-362 (365)
90 KOG1387 Glycosyltransferase [C 99.6 1.8E-12 3.9E-17 138.3 26.6 132 593-731 324-462 (465)
91 cd03786 GT1_UDP-GlcNAc_2-Epime 99.5 4.5E-13 9.9E-18 144.1 18.8 309 261-725 15-362 (363)
92 PF13692 Glyco_trans_1_4: Glyc 99.5 5.5E-14 1.2E-18 130.4 9.9 83 606-693 53-135 (135)
93 PRK09814 beta-1,6-galactofuran 99.4 6.4E-11 1.4E-15 128.1 28.7 99 605-710 206-315 (333)
94 TIGR00215 lpxB lipid-A-disacch 99.4 1.1E-10 2.3E-15 129.3 28.5 97 603-708 249-366 (385)
95 TIGR03713 acc_sec_asp1 accesso 99.3 8.8E-12 1.9E-16 143.1 15.2 109 606-725 409-519 (519)
96 TIGR02094 more_P_ylases alpha- 99.3 6.4E-11 1.4E-15 138.0 21.7 127 598-726 450-599 (601)
97 PF13524 Glyco_trans_1_2: Glyc 99.3 1.7E-11 3.6E-16 108.0 10.4 92 626-723 1-92 (92)
98 PRK12446 undecaprenyldiphospho 99.2 9.2E-09 2E-13 112.8 26.5 105 609-727 237-351 (352)
99 KOG2941 Beta-1,4-mannosyltrans 99.1 8E-08 1.7E-12 103.4 28.5 133 562-723 296-437 (444)
100 COG0707 MurG UDP-N-acetylgluco 99.1 3.5E-08 7.7E-13 108.7 26.3 110 608-728 237-354 (357)
101 PF00982 Glyco_transf_20: Glyc 99.1 1.4E-08 3.1E-13 115.6 23.5 266 362-726 198-473 (474)
102 COG1519 KdtA 3-deoxy-D-manno-o 99.0 8.5E-07 1.9E-11 98.3 32.5 349 241-727 46-417 (419)
103 PRK10117 trehalose-6-phosphate 99.0 3.9E-08 8.5E-13 111.5 22.5 265 362-729 180-455 (474)
104 cd04299 GT1_Glycogen_Phosphory 99.0 1.7E-08 3.7E-13 120.4 19.3 193 439-727 474-689 (778)
105 PLN02205 alpha,alpha-trehalose 98.9 4.1E-07 8.9E-12 110.2 26.5 268 362-728 258-552 (854)
106 PF13439 Glyco_transf_4: Glyco 98.8 5.7E-08 1.2E-12 92.0 11.4 145 246-418 3-177 (177)
107 COG0380 OtsA Trehalose-6-phosp 98.7 1.9E-06 4.1E-11 97.9 24.3 264 362-727 204-479 (486)
108 TIGR03590 PseG pseudaminic aci 98.7 1.4E-06 3E-11 92.8 20.9 77 244-320 1-89 (279)
109 TIGR02919 accessory Sec system 98.7 2.3E-07 4.9E-12 104.9 15.3 91 605-702 328-420 (438)
110 TIGR03492 conserved hypothetic 98.6 2.3E-05 5E-10 87.6 26.7 104 607-719 280-390 (396)
111 cd03784 GT1_Gtf_like This fami 98.5 4.9E-05 1.1E-09 83.6 27.2 92 603-702 285-380 (401)
112 PF13528 Glyco_trans_1_3: Glyc 98.5 3.4E-05 7.3E-10 82.1 23.1 80 605-690 231-317 (318)
113 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 0.00016 3.4E-09 80.1 27.8 101 606-724 262-364 (365)
114 PF04007 DUF354: Protein of un 98.3 0.00019 4.2E-09 78.7 24.4 78 260-343 15-110 (335)
115 PF13579 Glyco_trans_4_4: Glyc 98.2 5.7E-06 1.2E-10 77.0 8.3 117 255-375 1-143 (160)
116 TIGR01426 MGT glycosyltransfer 98.1 0.0001 2.2E-09 81.4 17.3 113 604-724 273-389 (392)
117 COG3914 Spy Predicted O-linked 98.1 0.0018 3.9E-08 74.5 26.8 339 238-730 255-616 (620)
118 PF13844 Glyco_transf_41: Glyc 98.0 0.00011 2.4E-09 83.6 15.9 119 603-728 338-467 (468)
119 COG1819 Glycosyl transferases, 97.8 0.0032 7E-08 70.9 22.8 116 603-726 281-400 (406)
120 PF13477 Glyco_trans_4_2: Glyc 97.5 0.00097 2.1E-08 62.3 11.7 95 244-346 1-108 (139)
121 PF07429 Glyco_transf_56: 4-al 97.5 0.0092 2E-07 65.5 19.7 128 585-728 225-356 (360)
122 PF02684 LpxB: Lipid-A-disacch 97.4 0.042 9.1E-07 61.5 24.0 76 615-700 252-347 (373)
123 COG0763 LpxB Lipid A disacchar 97.4 0.022 4.8E-07 63.3 21.0 81 616-706 257-357 (381)
124 PRK02797 4-alpha-L-fucosyltran 97.3 0.023 5E-07 61.8 20.3 130 585-730 186-319 (322)
125 COG1817 Uncharacterized protei 97.2 0.047 1E-06 59.3 21.1 173 260-469 15-214 (346)
126 COG4671 Predicted glycosyl tra 97.2 0.046 1E-06 60.2 21.3 83 605-694 276-366 (400)
127 PF04101 Glyco_tran_28_C: Glyc 97.2 0.00026 5.5E-09 69.0 3.2 93 606-704 55-155 (167)
128 COG0381 WecB UDP-N-acetylgluco 97.2 0.17 3.8E-06 56.5 25.4 110 603-728 259-371 (383)
129 PF02350 Epimerase_2: UDP-N-ac 97.2 0.046 1E-06 60.4 21.1 103 607-726 240-346 (346)
130 PRK01021 lpxB lipid-A-disaccha 97.1 0.16 3.5E-06 59.9 25.9 84 617-708 482-586 (608)
131 PHA03392 egt ecdysteroid UDP-g 96.9 0.038 8.1E-07 64.2 18.6 97 603-706 343-445 (507)
132 COG3980 spsG Spore coat polysa 96.4 0.56 1.2E-05 50.6 21.1 90 605-704 209-304 (318)
133 PF04464 Glyphos_transf: CDP-G 96.3 0.26 5.5E-06 54.2 19.0 111 603-726 249-368 (369)
134 PF00201 UDPGT: UDP-glucoronos 96.1 0.058 1.3E-06 61.6 13.2 91 605-700 322-416 (500)
135 PRK14986 glycogen phosphorylas 96.0 0.12 2.5E-06 62.8 15.1 75 603-677 617-697 (815)
136 PF09314 DUF1972: Domain of un 95.7 0.24 5.2E-06 50.4 13.6 132 243-375 2-167 (185)
137 cd04300 GT1_Glycogen_Phosphory 95.6 0.2 4.4E-06 60.8 15.1 75 603-677 604-684 (797)
138 PF00343 Phosphorylase: Carboh 95.6 0.68 1.5E-05 55.7 19.0 74 602-675 517-596 (713)
139 COG4641 Uncharacterized protei 95.4 0.036 7.9E-07 61.4 7.3 118 606-727 237-361 (373)
140 PRK14985 maltodextrin phosphor 95.3 0.13 2.9E-06 62.2 12.2 71 607-677 609-683 (798)
141 TIGR02093 P_ylase glycogen/sta 95.3 0.15 3.3E-06 61.7 12.5 75 603-677 601-681 (794)
142 TIGR00661 MJ1255 conserved hyp 95.2 0.056 1.2E-06 58.4 7.9 82 604-694 227-315 (321)
143 COG0058 GlgP Glucan phosphoryl 95.0 0.34 7.3E-06 58.4 14.2 75 603-677 554-632 (750)
144 PLN02670 transferase, transfer 93.7 0.39 8.4E-06 55.5 10.6 116 608-728 341-466 (472)
145 KOG1050 Trehalose-6-phosphate 93.6 1.6 3.5E-05 52.9 16.0 103 615-723 364-470 (732)
146 PF11440 AGT: DNA alpha-glucos 93.2 1.8 4E-05 46.7 13.7 193 256-470 2-210 (355)
147 PLN02410 UDP-glucoronosyl/UDP- 92.9 0.62 1.3E-05 53.5 10.6 84 606-695 324-412 (451)
148 PF06258 Mito_fiss_Elm1: Mitoc 92.3 20 0.00044 39.3 21.3 49 606-659 209-259 (311)
149 PLN02208 glycosyltransferase f 92.0 1.4 3.1E-05 50.4 12.1 115 606-725 311-437 (442)
150 PLN02554 UDP-glycosyltransfera 91.9 1.1 2.3E-05 51.9 11.0 114 606-726 342-477 (481)
151 PLN02173 UDP-glucosyl transfer 91.7 1.2 2.6E-05 51.2 10.9 85 606-695 317-410 (449)
152 PLN03007 UDP-glucosyltransfera 91.6 1.5 3.3E-05 50.6 11.9 85 605-694 344-441 (482)
153 PLN03004 UDP-glycosyltransfera 91.4 0.83 1.8E-05 52.5 9.4 88 606-698 334-429 (451)
154 PLN02448 UDP-glycosyltransfera 91.2 1.6 3.4E-05 50.2 11.4 93 607-704 324-427 (459)
155 COG3660 Predicted nucleoside-d 91.0 26 0.00057 37.9 19.7 59 597-660 215-276 (329)
156 PLN02562 UDP-glycosyltransfera 90.7 1.4 3.1E-05 50.4 10.4 88 606-700 328-420 (448)
157 PLN02210 UDP-glucosyl transfer 90.1 1.6 3.4E-05 50.3 10.0 109 610-723 328-451 (456)
158 PLN02152 indole-3-acetate beta 89.6 2 4.4E-05 49.4 10.5 86 605-695 326-419 (455)
159 PLN02555 limonoid glucosyltran 89.4 2.8 6.2E-05 48.6 11.5 92 606-705 337-440 (480)
160 PLN02764 glycosyltransferase f 89.3 3.3 7E-05 47.8 11.8 117 608-729 319-447 (453)
161 PLN00414 glycosyltransferase f 89.0 2.2 4.7E-05 49.1 10.1 92 608-706 314-416 (446)
162 PLN02992 coniferyl-alcohol glu 88.6 3.2 6.9E-05 48.2 11.2 83 607-694 339-428 (481)
163 PLN02863 UDP-glucoronosyl/UDP- 88.0 5.4 0.00012 46.2 12.6 114 606-726 343-470 (477)
164 PLN02167 UDP-glycosyltransfera 86.3 5.1 0.00011 46.3 11.2 109 609-724 343-469 (475)
165 PLN00164 glucosyltransferase; 84.6 6.9 0.00015 45.4 11.2 92 608-704 341-443 (480)
166 PF05159 Capsule_synth: Capsul 83.7 5.4 0.00012 42.1 9.1 44 606-657 182-226 (269)
167 PLN02534 UDP-glycosyltransfera 82.2 12 0.00026 43.7 11.8 82 606-692 344-443 (491)
168 TIGR02195 heptsyl_trn_II lipop 81.9 11 0.00023 40.9 10.7 41 610-657 236-278 (334)
169 PRK10017 colanic acid biosynth 81.3 26 0.00057 40.2 13.9 86 615-707 319-406 (426)
170 PRK10964 ADP-heptose:LPS hepto 80.9 51 0.0011 35.6 15.5 44 607-657 235-280 (322)
171 PRK14089 ipid-A-disaccharide s 80.0 2.9 6.2E-05 46.6 5.6 34 616-656 228-261 (347)
172 PLN02207 UDP-glycosyltransfera 79.0 17 0.00036 42.3 11.5 82 606-692 332-425 (468)
173 PF03016 Exostosin: Exostosin 77.1 2.5 5.4E-05 44.7 3.9 69 615-687 228-299 (302)
174 TIGR02193 heptsyl_trn_I lipopo 75.8 76 0.0016 34.0 14.9 76 609-691 238-319 (319)
175 PF03033 Glyco_transf_28: Glyc 74.8 5.8 0.00013 36.9 5.3 48 253-303 7-54 (139)
176 PF10093 DUF2331: Uncharacteri 72.7 1.8E+02 0.0038 33.1 18.9 42 607-655 245-288 (374)
177 cd03789 GT1_LPS_heptosyltransf 72.4 28 0.00061 36.7 10.4 44 608-658 181-226 (279)
178 PF08323 Glyco_transf_5: Starc 70.6 7.7 0.00017 40.7 5.6 38 244-281 1-42 (245)
179 PF01075 Glyco_transf_9: Glyco 69.3 27 0.00059 35.8 9.3 44 607-657 165-210 (247)
180 KOG1192 UDP-glucuronosyl and U 69.2 36 0.00078 38.7 11.1 90 606-700 335-429 (496)
181 PF12000 Glyco_trans_4_3: Gkyc 68.8 24 0.00051 35.7 8.3 47 270-321 1-76 (171)
182 PLN03015 UDP-glucosyl transfer 67.2 38 0.00083 39.4 10.7 80 608-692 337-425 (470)
183 PRK10916 ADP-heptose:LPS hepto 67.2 74 0.0016 34.8 12.6 41 608-655 244-286 (348)
184 PRK10422 lipopolysaccharide co 66.6 68 0.0015 35.2 12.2 43 607-656 244-288 (352)
185 TIGR02201 heptsyl_trn_III lipo 62.2 91 0.002 33.9 12.1 42 608-656 243-286 (344)
186 TIGR01470 cysG_Nterm siroheme 61.6 26 0.00056 36.1 7.2 71 241-321 8-79 (205)
187 PRK01710 murD UDP-N-acetylmura 61.0 36 0.00079 39.0 9.1 80 234-322 6-88 (458)
188 PF01012 ETF: Electron transfe 57.3 70 0.0015 31.1 9.2 82 253-334 12-113 (164)
189 COG2327 WcaK Polysaccharide py 57.2 92 0.002 35.5 11.0 90 603-699 263-357 (385)
190 PRK06718 precorrin-2 dehydroge 56.2 31 0.00066 35.4 6.7 69 241-319 9-78 (202)
191 COG0859 RfaF ADP-heptose:LPS h 55.0 70 0.0015 35.1 9.7 41 610-657 236-278 (334)
192 PF01975 SurE: Survival protei 54.8 32 0.0007 35.3 6.5 99 246-346 3-135 (196)
193 KOG1021 Acetylglucosaminyltran 54.2 33 0.00072 39.7 7.2 93 615-714 335-432 (464)
194 PRK06988 putative formyltransf 54.1 34 0.00073 37.5 7.0 68 243-317 3-83 (312)
195 PF10087 DUF2325: Uncharacteri 53.8 32 0.0007 30.8 5.7 50 616-665 41-91 (97)
196 COG0569 TrkA K+ transport syst 52.2 1.7E+02 0.0037 30.5 11.5 87 256-344 7-100 (225)
197 PRK14106 murD UDP-N-acetylmura 52.0 49 0.0011 37.5 8.1 72 241-321 4-78 (450)
198 PF13614 AAA_31: AAA domain; P 51.5 39 0.00085 32.0 6.2 45 244-288 1-45 (157)
199 PRK06719 precorrin-2 dehydroge 51.2 54 0.0012 32.3 7.2 66 241-319 12-78 (157)
200 CHL00073 chlN photochlorophyll 49.7 60 0.0013 37.8 8.3 82 231-319 303-399 (457)
201 smart00672 CAP10 Putative lipo 49.1 1.9E+02 0.004 31.0 11.4 47 681-727 202-248 (256)
202 PF00070 Pyr_redox: Pyridine n 48.3 37 0.0008 28.9 5.0 47 256-302 6-62 (80)
203 PF03853 YjeF_N: YjeF-related 47.4 66 0.0014 31.9 7.3 74 241-317 24-105 (169)
204 PRK00005 fmt methionyl-tRNA fo 47.1 54 0.0012 35.8 7.1 62 256-317 7-84 (309)
205 PRK05993 short chain dehydroge 46.4 85 0.0018 32.9 8.4 70 244-320 5-85 (277)
206 TIGR01279 DPOR_bchN light-inde 46.4 39 0.00084 38.4 6.1 83 231-320 263-352 (407)
207 PF08660 Alg14: Oligosaccharid 45.3 93 0.002 31.2 8.0 28 252-279 5-34 (170)
208 TIGR00460 fmt methionyl-tRNA f 44.4 62 0.0013 35.5 7.1 68 244-318 2-85 (313)
209 PRK02842 light-independent pro 44.2 43 0.00093 38.2 6.1 81 234-321 282-370 (427)
210 PF15024 Glyco_transf_18: Glyc 44.2 63 0.0014 38.4 7.4 110 603-727 319-455 (559)
211 PRK05562 precorrin-2 dehydroge 43.0 82 0.0018 33.2 7.4 69 242-319 25-93 (223)
212 COG1647 Esterase/lipase [Gener 42.7 44 0.00096 35.4 5.3 51 242-294 14-64 (243)
213 PRK02006 murD UDP-N-acetylmura 42.6 88 0.0019 36.2 8.4 72 242-322 7-80 (498)
214 PF05686 Glyco_transf_90: Glyc 42.6 1.2E+02 0.0026 34.4 9.3 85 640-727 228-317 (395)
215 PRK10867 signal recognition pa 42.5 1.3E+02 0.0028 34.7 9.6 78 243-321 100-193 (433)
216 PHA02518 ParA-like protein; Pr 41.0 80 0.0017 31.4 6.9 47 244-290 1-47 (211)
217 KOG0780 Signal recognition par 40.9 77 0.0017 36.3 7.1 76 245-320 102-192 (483)
218 PRK01438 murD UDP-N-acetylmura 40.7 91 0.002 35.8 8.1 72 241-322 15-89 (480)
219 COG0373 HemA Glutamyl-tRNA red 40.6 2.7E+02 0.0059 32.1 11.6 112 558-678 177-297 (414)
220 PRK00421 murC UDP-N-acetylmura 40.3 71 0.0015 36.6 7.1 72 240-322 5-77 (461)
221 PRK03803 murD UDP-N-acetylmura 39.9 93 0.002 35.4 7.9 76 239-322 2-79 (448)
222 KOG4626 O-linked N-acetylgluco 39.4 1.6E+02 0.0034 35.7 9.5 121 603-729 812-942 (966)
223 COG2204 AtoC Response regulato 38.9 2.9E+02 0.0063 32.3 11.6 88 607-697 30-126 (464)
224 PF12146 Hydrolase_4: Putative 38.1 71 0.0015 27.8 5.2 37 242-280 15-51 (79)
225 COG0223 Fmt Methionyl-tRNA for 37.1 1.1E+02 0.0025 33.7 7.7 69 243-318 2-86 (307)
226 cd01965 Nitrogenase_MoFe_beta_ 36.8 90 0.0019 35.5 7.2 81 233-320 290-380 (428)
227 TIGR01832 kduD 2-deoxy-D-gluco 36.5 92 0.002 31.6 6.6 33 241-279 4-36 (248)
228 PF12965 DUF3854: Domain of un 36.4 1.3E+02 0.0027 29.0 7.0 63 233-295 58-127 (130)
229 PRK10840 transcriptional regul 36.1 4.5E+02 0.0097 26.2 11.7 77 613-692 37-125 (216)
230 PRK10360 DNA-binding transcrip 36.1 3.5E+02 0.0076 25.8 10.3 67 623-692 47-117 (196)
231 PRK06182 short chain dehydroge 36.0 1.2E+02 0.0027 31.4 7.6 70 244-320 4-83 (273)
232 TIGR01285 nifN nitrogenase mol 35.4 71 0.0015 36.7 6.1 82 230-320 299-382 (432)
233 PRK13886 conjugal transfer pro 35.1 3.1E+02 0.0066 29.3 10.3 105 243-347 2-124 (241)
234 PRK06463 fabG 3-ketoacyl-(acyl 34.4 1.6E+02 0.0035 30.1 8.1 72 244-321 8-89 (255)
235 COG0552 FtsY Signal recognitio 34.3 1.3E+02 0.0028 33.8 7.4 78 243-320 138-230 (340)
236 TIGR02026 BchE magnesium-proto 34.2 1.3E+02 0.0029 35.0 8.1 36 244-279 1-44 (497)
237 TIGR00661 MJ1255 conserved hyp 33.9 1.8E+02 0.0039 31.4 8.7 23 256-279 12-34 (321)
238 TIGR00064 ftsY signal recognit 33.9 1.9E+02 0.0042 31.0 8.7 78 242-320 71-163 (272)
239 PRK14494 putative molybdopteri 33.4 2.4E+02 0.0051 29.9 9.0 36 244-280 2-37 (229)
240 cd01979 Pchlide_reductase_N Pc 33.1 1.7E+02 0.0037 33.0 8.6 99 233-346 267-372 (396)
241 TIGR03029 EpsG chain length de 33.0 94 0.002 32.8 6.2 42 241-282 101-142 (274)
242 cd01974 Nitrogenase_MoFe_beta 33.0 2.1E+02 0.0045 32.8 9.3 80 234-320 295-386 (435)
243 TIGR01426 MGT glycosyltransfer 33.0 4.2E+02 0.0091 29.2 11.6 114 206-343 203-318 (392)
244 COG4565 CitB Response regulato 33.0 3E+02 0.0065 29.1 9.5 105 588-695 9-122 (224)
245 TIGR01007 eps_fam capsular exo 32.7 1.2E+02 0.0026 30.4 6.7 45 241-285 15-59 (204)
246 PLN02285 methionyl-tRNA formyl 32.3 1.5E+02 0.0032 33.0 7.7 68 242-316 6-98 (334)
247 PRK03767 NAD(P)H:quinone oxido 32.1 1.8E+02 0.004 29.4 7.8 74 244-321 3-79 (200)
248 TIGR01081 mpl UDP-N-acetylmura 31.8 67 0.0015 36.6 5.1 69 250-322 3-71 (448)
249 TIGR00715 precor6x_red precorr 31.8 2.7E+02 0.0058 29.9 9.3 68 261-330 12-84 (256)
250 PF04609 MCR_C: Methyl-coenzym 31.6 1.1E+02 0.0024 32.9 6.2 73 233-305 60-142 (268)
251 PRK04308 murD UDP-N-acetylmura 31.1 2E+02 0.0043 32.7 8.7 72 242-322 5-78 (445)
252 PRK00048 dihydrodipicolinate r 30.5 2.2E+02 0.0047 30.2 8.4 43 615-659 52-94 (257)
253 TIGR01968 minD_bact septum sit 30.0 98 0.0021 31.8 5.6 39 244-282 2-40 (261)
254 TIGR01283 nifE nitrogenase mol 30.0 1.9E+02 0.0041 33.3 8.4 79 234-319 318-403 (456)
255 PF12038 DUF3524: Domain of un 29.8 1.8E+02 0.004 29.4 7.1 120 244-375 2-133 (168)
256 TIGR01862 N2-ase-Ialpha nitrog 29.6 88 0.0019 36.0 5.6 79 235-320 310-396 (443)
257 PRK06483 dihydromonapterin red 29.3 2.8E+02 0.0062 27.9 8.8 42 259-301 13-54 (236)
258 PRK05562 precorrin-2 dehydroge 29.1 6.8E+02 0.015 26.4 11.5 143 559-710 25-179 (223)
259 PRK08993 2-deoxy-D-gluconate 3 28.7 1.7E+02 0.0037 30.0 7.1 72 244-320 11-94 (253)
260 PRK08125 bifunctional UDP-gluc 28.7 1.5E+02 0.0033 35.6 7.7 63 256-318 7-82 (660)
261 TIGR01425 SRP54_euk signal rec 28.5 2.5E+02 0.0054 32.5 8.9 78 243-321 100-192 (429)
262 PRK06179 short chain dehydroge 28.4 1.7E+02 0.0038 30.1 7.2 73 240-321 1-83 (270)
263 COG0541 Ffh Signal recognition 28.2 2E+02 0.0043 33.4 7.9 74 248-321 104-192 (451)
264 PRK14478 nitrogenase molybdenu 28.1 1.6E+02 0.0035 34.2 7.5 79 234-319 316-401 (475)
265 PRK10416 signal recognition pa 27.8 4E+02 0.0088 29.4 10.1 77 243-320 114-205 (318)
266 PRK06027 purU formyltetrahydro 27.5 71 0.0015 34.7 4.1 73 239-317 86-171 (286)
267 PRK12481 2-deoxy-D-gluconate 3 27.2 1.5E+02 0.0032 30.5 6.4 32 243-279 8-39 (251)
268 PRK01906 tetraacyldisaccharide 26.9 2.3E+02 0.0051 31.6 8.1 34 246-279 58-93 (338)
269 PRK08057 cobalt-precorrin-6x r 26.9 5.9E+02 0.013 27.1 10.8 69 258-330 11-84 (248)
270 COG1648 CysG Siroheme synthase 26.7 1.2E+02 0.0025 31.7 5.4 69 242-319 12-80 (210)
271 cd03466 Nitrogenase_NifN_2 Nit 26.6 2E+02 0.0044 32.9 7.8 79 235-320 293-381 (429)
272 PRK14573 bifunctional D-alanyl 26.3 1.4E+02 0.0031 36.9 7.0 66 252-323 10-75 (809)
273 TIGR03371 cellulose_yhjQ cellu 26.2 1.4E+02 0.003 30.6 5.8 42 244-285 2-43 (246)
274 PRK13849 putative crown gall t 26.2 1.7E+02 0.0037 30.6 6.5 47 244-290 2-48 (231)
275 COG1703 ArgK Putative periplas 25.8 2.6E+02 0.0056 31.1 7.9 67 253-319 58-151 (323)
276 cd05017 SIS_PGI_PMI_1 The memb 25.7 2E+02 0.0043 26.5 6.3 58 240-302 41-98 (119)
277 cd01020 TroA_b Metal binding p 25.7 2E+02 0.0043 30.5 7.1 90 616-710 45-136 (264)
278 PRK13810 orotate phosphoribosy 25.7 2.4E+02 0.0052 28.8 7.3 58 240-300 120-179 (187)
279 TIGR02622 CDP_4_6_dhtase CDP-g 25.7 3.3E+02 0.0071 29.6 9.0 34 240-279 2-35 (349)
280 PF10649 DUF2478: Protein of u 25.5 61 0.0013 32.4 2.9 43 616-658 85-132 (159)
281 PRK00771 signal recognition pa 25.4 3.2E+02 0.007 31.6 9.1 78 243-321 95-185 (437)
282 COG0489 Mrp ATPases involved i 25.4 1.9E+02 0.004 31.0 6.8 56 235-290 47-104 (265)
283 PRK12742 oxidoreductase; Provi 25.2 2.3E+02 0.0051 28.3 7.2 60 259-319 17-83 (237)
284 smart00851 MGS MGS-like domain 25.1 1.8E+02 0.0038 25.5 5.6 54 261-319 2-63 (90)
285 PRK02472 murD UDP-N-acetylmura 25.0 2.6E+02 0.0055 31.7 8.2 62 260-322 16-79 (447)
286 COG0062 Uncharacterized conser 25.0 1.7E+02 0.0036 30.5 6.1 43 242-287 49-91 (203)
287 TIGR01969 minD_arch cell divis 24.8 1.6E+02 0.0034 30.1 6.0 40 244-283 1-40 (251)
288 PF02254 TrkA_N: TrkA-N domain 24.7 1.8E+02 0.004 26.0 5.8 62 256-319 5-70 (116)
289 cd00316 Oxidoreductase_nitroge 24.6 2.8E+02 0.006 30.8 8.3 80 234-320 271-357 (399)
290 cd02036 MinD Bacterial cell di 24.5 1.3E+02 0.0027 28.9 5.0 39 245-283 1-39 (179)
291 PF02441 Flavoprotein: Flavopr 24.3 88 0.0019 29.4 3.7 72 243-318 1-80 (129)
292 CHL00175 minD septum-site dete 24.2 1.5E+02 0.0033 31.3 5.9 41 243-283 15-55 (281)
293 PF11169 DUF2956: Protein of u 24.1 37 0.00081 31.5 1.0 19 67-85 83-101 (103)
294 PF01656 CbiA: CobQ/CobB/MinD/ 24.0 1.5E+02 0.0033 28.7 5.5 41 247-287 2-42 (195)
295 PRK06194 hypothetical protein; 23.9 2.5E+02 0.0054 29.3 7.4 22 258-279 16-37 (287)
296 PRK05920 aromatic acid decarbo 23.9 1.2E+02 0.0026 31.5 4.8 36 241-279 2-37 (204)
297 PF04230 PS_pyruv_trans: Polys 23.8 1.1E+02 0.0024 30.7 4.5 37 613-656 247-283 (286)
298 cd01977 Nitrogenase_VFe_alpha 23.6 2.9E+02 0.0063 31.4 8.3 78 236-320 282-367 (415)
299 PF13241 NAD_binding_7: Putati 23.5 2E+02 0.0043 26.0 5.7 63 241-319 6-68 (103)
300 PF11071 DUF2872: Protein of u 23.3 3E+02 0.0065 27.0 6.9 41 616-659 65-110 (141)
301 PRK08305 spoVFB dipicolinate s 23.2 1.3E+02 0.0029 31.0 5.0 36 241-279 4-40 (196)
302 PRK09072 short chain dehydroge 23.1 2.8E+02 0.006 28.5 7.5 24 256-279 13-36 (263)
303 COG0461 PyrE Orotate phosphori 23.1 2.5E+02 0.0053 29.3 6.9 62 241-305 111-174 (201)
304 PF09140 MipZ: ATPase MipZ; I 23.0 1.8E+02 0.0038 31.5 5.9 42 245-286 2-43 (261)
305 PRK05647 purN phosphoribosylgl 22.9 2.1E+02 0.0045 29.4 6.3 57 260-316 14-85 (200)
306 PF04413 Glycos_transf_N: 3-De 22.7 6.7E+02 0.015 25.3 9.9 126 246-375 23-163 (186)
307 PRK12429 3-hydroxybutyrate deh 22.6 1.9E+02 0.0042 29.2 6.1 21 259-279 15-35 (258)
308 PRK01390 murD UDP-N-acetylmura 22.5 2E+02 0.0043 32.8 6.8 68 242-322 9-76 (460)
309 TIGR03609 S_layer_CsaB polysac 22.5 2.2E+02 0.0049 30.2 6.8 44 607-657 234-277 (298)
310 PRK06849 hypothetical protein; 22.5 3.4E+02 0.0074 30.2 8.5 33 242-280 4-36 (389)
311 PRK07890 short chain dehydroge 22.5 1.8E+02 0.0038 29.6 5.8 34 240-279 3-36 (258)
312 PRK06128 oxidoreductase; Provi 22.4 3.5E+02 0.0075 28.7 8.2 19 262-280 69-87 (300)
313 TIGR01286 nifK nitrogenase mol 22.3 3.1E+02 0.0067 32.5 8.3 85 229-320 350-446 (515)
314 PRK00141 murD UDP-N-acetylmura 22.2 2.5E+02 0.0054 32.4 7.6 72 241-322 14-85 (473)
315 PRK13811 orotate phosphoribosy 22.2 3E+02 0.0064 27.5 7.2 58 240-300 102-161 (170)
316 PF04127 DFP: DNA / pantothena 22.2 2E+02 0.0043 29.3 6.0 59 259-322 30-93 (185)
317 cd02037 MRP-like MRP (Multiple 22.1 1.7E+02 0.0036 28.5 5.3 40 246-285 2-41 (169)
318 TIGR00639 PurN phosphoribosylg 22.0 1.6E+02 0.0035 30.0 5.3 60 258-317 11-85 (190)
319 TIGR03018 pepcterm_TyrKin exop 21.9 2E+02 0.0044 29.1 6.0 42 243-284 35-77 (207)
320 PRK07231 fabG 3-ketoacyl-(acyl 21.8 3.1E+02 0.0067 27.6 7.4 31 244-279 6-36 (251)
321 PRK07060 short chain dehydroge 21.5 3.5E+02 0.0075 27.2 7.7 61 258-320 19-86 (245)
322 PF02571 CbiJ: Precorrin-6x re 21.1 6.7E+02 0.015 26.7 9.9 74 256-330 7-85 (249)
323 TIGR01861 ANFD nitrogenase iro 21.0 1.4E+02 0.0031 35.2 5.3 78 236-320 322-407 (513)
324 PHA03392 egt ecdysteroid UDP-g 20.7 1.6E+02 0.0035 34.6 5.6 38 242-281 20-58 (507)
325 COG1663 LpxK Tetraacyldisaccha 20.6 2.3E+02 0.0049 31.8 6.4 37 243-279 46-84 (336)
326 PRK13812 orotate phosphoribosy 20.6 3.4E+02 0.0074 27.3 7.2 59 240-301 105-165 (176)
327 TIGR03264 met_CoM_red_C methyl 20.6 1.4E+02 0.0031 30.5 4.4 57 231-288 22-78 (194)
328 PRK10037 cell division protein 20.5 1.7E+02 0.0037 30.5 5.3 41 244-284 2-42 (250)
329 PRK01372 ddl D-alanine--D-alan 20.5 2.2E+02 0.0047 30.3 6.2 41 240-280 2-44 (304)
330 PF03358 FMN_red: NADPH-depend 20.3 1.9E+02 0.0042 27.3 5.2 40 244-283 2-42 (152)
331 cd05014 SIS_Kpsf KpsF-like pro 20.3 2E+02 0.0044 26.3 5.2 46 240-288 45-90 (128)
332 PF01113 DapB_N: Dihydrodipico 20.3 1.3E+02 0.0029 28.2 4.0 47 615-663 59-105 (124)
333 PRK07577 short chain dehydroge 20.2 4.2E+02 0.0091 26.4 7.9 25 255-279 10-34 (234)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=6.5e-38 Score=337.55 Aligned_cols=355 Identities=19% Similarity=0.274 Sum_probs=270.9
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch-----------hhhhc
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS-----------FKTSM 310 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~-----------~~~~~ 310 (732)
+++|++|...++.||++.++++||++|.+.|+++.++++.+.+.+.+++...|++++..+.... +.++.
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQL 80 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999877767778888889999987764321 23378
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEee-----chhHhH--HHhhhhh-ccccEEEEecHHhHHHhhhHHHh
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME-----NRREYF--DRAKLVL-DRVKLLVFLSESQTKQWLTWCEE 382 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e-----~r~~~~--~~~~~~l-~r~~~li~vS~~~~~~~~~~~~~ 382 (732)
+||+||+++... +. ..+.+...+.+..++..|. .....+ ....... ...+.++++|+..... +..
T Consensus 81 ~~Divh~~~~~~--~~-~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~----~~~ 153 (374)
T TIGR03088 81 RPDIVHTRNLAA--LE-AQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDW----LRG 153 (374)
T ss_pred CCCEEEEcchhH--HH-HHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHH----HHH
Confidence 999999987432 22 2222333344432322211 000000 1111112 2367889999886432 210
Q ss_pred hhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 004760 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (732)
Q Consensus 383 e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LL 462 (732)
..+..+ ..+.+||||+|...|.+..... ...++....+++.++|+++|++.+.||++.++
T Consensus 154 ---~~~~~~-----------~~~~vi~ngvd~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li 213 (374)
T TIGR03088 154 ---PVKVPP-----------AKIHQIYNGVDTERFHPSRGDR------SPILPPDFFADESVVVGTVGRLQAVKDQPTLV 213 (374)
T ss_pred ---hcCCCh-----------hhEEEeccCccccccCCCccch------hhhhHhhcCCCCCeEEEEEecCCcccCHHHHH
Confidence 112221 2347899999999887653211 22333444567788999999999999999999
Q ss_pred HHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcc
Q 004760 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (732)
Q Consensus 463 eA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf 542 (732)
+|+..+.++.+..
T Consensus 214 ~a~~~l~~~~~~~------------------------------------------------------------------- 226 (374)
T TIGR03088 214 RAFALLVRQLPEG------------------------------------------------------------------- 226 (374)
T ss_pred HHHHHHHHhCccc-------------------------------------------------------------------
Confidence 9999998776531
Q ss_pred cccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHH
Q 004760 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS 622 (732)
Q Consensus 543 ~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lys 622 (732)
.+..+++++|+|+..+.++..+. .+++.+++.|+|+.+++.++|+
T Consensus 227 --------------~~~~~l~i~G~g~~~~~~~~~~~---------------------~~~~~~~v~~~g~~~~~~~~~~ 271 (374)
T TIGR03088 227 --------------AERLRLVIVGDGPARGACEQMVR---------------------AAGLAHLVWLPGERDDVPALMQ 271 (374)
T ss_pred --------------ccceEEEEecCCchHHHHHHHHH---------------------HcCCcceEEEcCCcCCHHHHHH
Confidence 01246888999876666655543 3377889999999999999999
Q ss_pred HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 623 AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAM 702 (732)
Q Consensus 623 aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~ 702 (732)
+||++|+||. .|+||++++|||+||+|||+|+.||..|+++++.+|++++++|+ ++|+++|..++++++.+.+|++
T Consensus 272 ~adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~--~~la~~i~~l~~~~~~~~~~~~ 347 (374)
T TIGR03088 272 ALDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDA--VALARALQPYVSDPAARRAHGA 347 (374)
T ss_pred hcCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCH--HHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999998 99999999999999999999999999999999999999999888 9999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 703 EGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 703 ~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
++++.++++|+|+.+++++.++|++++
T Consensus 348 ~a~~~~~~~fs~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 348 AGRARAEQQFSINAMVAAYAGLYDQLL 374 (374)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998864
No 2
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.8e-40 Score=366.05 Aligned_cols=458 Identities=24% Similarity=0.242 Sum_probs=379.0
Q ss_pred CCCCCCcccee-eEeeccchhhcCCCCCCCCcccceeeccCCcchhhhcccCcccccccccccchhhhhccCCeEEEEeC
Q 004760 172 RGKGRGKQKAK-LDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFH 250 (732)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIllI~h 250 (732)
....+-.||.. ..++..+..++.|+.|..+.+|+...+++|.-|+++++|++..++ +|| +-. .+.++++.+++++|
T Consensus 6 ~~~~~~~qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s-~~~-~lg-~~d~G~qV~~l~~h 82 (495)
T KOG0853|consen 6 SSNISELQKVLWKAMIEKSLLVSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLS-GQD-VLG-LPDTGGQVVYLTSH 82 (495)
T ss_pred hhHHHHhhhhhhhhhhhhhcccccccccchhheeeccccccCchHHHhHHHHHHHHh-ccc-ccC-CCCCCceEEEEehh
Confidence 34455566664 333344444788999999999999999999999999999999999 888 656 99999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCC--CChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchhhHHHH
Q 004760 251 ELSMTGAPLSMMELATELLS-CGATVSAVVLSKRG--GLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWID 327 (732)
Q Consensus 251 ~ls~gGA~~~~~eLA~~L~~-~G~~V~vv~l~~~g--~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~~~~i~ 327 (732)
..+++ +|.+++.++..|.- ++..|+...+.+.. .+.+.....++.++..+....++..++.|++|++++.|..|+.
T Consensus 83 ~~al~-~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~ 161 (495)
T KOG0853|consen 83 EDALE-MPLLLRCFAETLDGTPPILVVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLL 161 (495)
T ss_pred hhhhc-chHHHHHHHHHhcCCCceEEEEeecCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHH
Confidence 99999 99999999998876 77777777776665 3677778899999999998878888999999999999999999
Q ss_pred HHHHhhcCCCccEEEEEeechhHhHHH--hhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceE
Q 004760 328 QYITRFPAGGSQVVWWIMENRREYFDR--AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFV 405 (732)
Q Consensus 328 ~~i~~~~~~~~~ivw~i~e~r~~~~~~--~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v 405 (732)
.++.+ +...++++||+|+.+..++.+ ....+.+...-.+-++.+..+|++|+.+.++....++..+++++++.
T Consensus 162 ~~~~~-p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~---- 236 (495)
T KOG0853|consen 162 KQLSG-PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDI---- 236 (495)
T ss_pred HHhcC-CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCc----
Confidence 99988 888899999999999998887 34555556666677788888899999999999999999999999986
Q ss_pred EeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccc
Q 004760 406 AGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRN 485 (732)
Q Consensus 406 ~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~ 485 (732)
.+.+.++|...+.+ ++.+++...+..+|.+.+....++++..+-++.|+||++++++|+..+....+..
T Consensus 237 ~~~y~ei~~s~~~~-~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~---------- 305 (495)
T KOG0853|consen 237 TSTYPEIDGSWFTY-GQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEP---------- 305 (495)
T ss_pred ceeeccccchhccc-cccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCC----------
Confidence 78888888888776 2334444466778888999988999999999999999999999999886655431
Q ss_pred cccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEec
Q 004760 486 VGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK 565 (732)
Q Consensus 486 i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~Lliv 565 (732)
.+ ...+++++
T Consensus 306 ------~~----------------------------------------------------------------~~~hl~~~ 315 (495)
T KOG0853|consen 306 ------SI----------------------------------------------------------------SSEHLVVA 315 (495)
T ss_pred ------CC----------------------------------------------------------------CceEEEEe
Confidence 00 11244455
Q ss_pred cCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCC-CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHH
Q 004760 566 SDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL-SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIE 644 (732)
Q Consensus 566 G~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l-~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilE 644 (732)
|+- +..+..+++..|++++.+.+.+. ++ .+.|.|+..+++...|+.+||+.+..++.-.|+||+|++|
T Consensus 316 g~~----------G~d~~~sen~~~~~el~~lie~~-~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IE 384 (495)
T KOG0853|consen 316 GSR----------GYDERDSENVEYLKELLSLIEEY-DLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIE 384 (495)
T ss_pred cCC----------CccccchhhHHHHHHHHHHHHHh-CccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHH
Confidence 532 12344566778999998888766 66 5788888988888878888886444333337999999999
Q ss_pred HHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004760 645 AMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQV 724 (732)
Q Consensus 645 AMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev 724 (732)
|||||+|||+|+.||..|+|.++.+|++++++...+..+|++|.++..||+.+.+|+++|+++++++|+|+++.+++.++
T Consensus 385 AMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~ 464 (495)
T KOG0853|consen 385 AMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASV 464 (495)
T ss_pred HHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999995543447999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 004760 725 IYKCMK 730 (732)
Q Consensus 725 ~~~~l~ 730 (732)
+.+++.
T Consensus 465 ~~~~~~ 470 (495)
T KOG0853|consen 465 LGKYLQ 470 (495)
T ss_pred hHhcCC
Confidence 988765
No 3
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=7.5e-35 Score=340.18 Aligned_cols=352 Identities=19% Similarity=0.170 Sum_probs=256.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCC------------EEEEEEe--C-CC--CCChhHHHhCCcEEEEcCCCch-
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGA------------TVSAVVL--S-KR--GGLMPELARRKIKVLEDRGEPS- 305 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~------------~V~vv~l--~-~~--g~l~~el~~~gI~v~~~~~~~~- 305 (732)
||++|++++..||||+++++||.+|.+.++ .+.|+++ . .. +.+..+|+..||+|........
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l~~~~~~ 362 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVYSDMQAW 362 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEeccCCcc
Confidence 799999999999999999999999999854 3455543 2 23 3477788899999877643210
Q ss_pred --------------------------------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech-----
Q 004760 306 --------------------------------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----- 348 (732)
Q Consensus 306 --------------------------------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r----- 348 (732)
+.++.+||+||+|+.... +...++....+.+.+++.+|...
T Consensus 363 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~--~lg~lAa~~~gvPvIv~t~h~~~~~~~~ 440 (694)
T PRK15179 363 GGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSI--FACALAALLAGVPRIVLSVRTMPPVDRP 440 (694)
T ss_pred CcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHH--HHHHHHHHHcCCCEEEEEeCCCccccch
Confidence 234679999999875442 22344444556664443433210
Q ss_pred hHh---HHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHH
Q 004760 349 REY---FDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREK 425 (732)
Q Consensus 349 ~~~---~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ek 425 (732)
..+ +......+...+..++++.+... ..++. ..++..+ ..+.+||||+|...|.+.+...+
T Consensus 441 ~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~--~~~l~---~~~g~~~-----------~kI~VI~NGVd~~~f~~~~~~~~ 504 (694)
T PRK15179 441 DRYRVEYDIIYSELLKMRGVALSSNSQFA--AHRYA---DWLGVDE-----------RRIPVVYNGLAPLKSVQDDACTA 504 (694)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEeCcHHH--HHHHH---HHcCCCh-----------hHEEEECCCcCHHhcCCCchhhH
Confidence 011 01111222334445555544311 01110 1123322 23589999999988865432111
Q ss_pred hHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccc
Q 004760 426 RNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLL 505 (732)
Q Consensus 426 r~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll 505 (732)
. +..+ ...++++.++|+++||+.+.||++.+|+|+..+.++.|+
T Consensus 505 ~---~~~~--~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~------------------------------- 548 (694)
T PRK15179 505 M---MAQF--DARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPK------------------------------- 548 (694)
T ss_pred H---HHhh--ccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcC-------------------------------
Confidence 0 0111 123455677899999999999999999999999776654
Q ss_pred cccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCC
Q 004760 506 QMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS 585 (732)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~ 585 (732)
.+++++|+|+.++.++.++.
T Consensus 549 ------------------------------------------------------~~LvIvG~G~~~~~L~~l~~------ 568 (694)
T PRK15179 549 ------------------------------------------------------VRFIMVGGGPLLESVREFAQ------ 568 (694)
T ss_pred ------------------------------------------------------eEEEEEccCcchHHHHHHHH------
Confidence 36888999887666665553
Q ss_pred CChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhc
Q 004760 586 NKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVE 665 (732)
Q Consensus 586 ~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe 665 (732)
.+++.++|+|+|+++++..+|++||+||+||. .|+||++++||||||+|||+|+.||+.|+|.
T Consensus 569 ---------------~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~ 631 (694)
T PRK15179 569 ---------------RLGMGERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQ 631 (694)
T ss_pred ---------------HcCCCCcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHcc
Confidence 34888999999999999999999999999998 9999999999999999999999999999999
Q ss_pred cCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 666 HNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 666 ~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
++.+|++++++|.+.++|+++|.+++.+......+++++++.++++|+|+.+++++.++|+
T Consensus 632 dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 632 EGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred CCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999998887557899999998887766678889999999989999999999999985
No 4
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=2.2e-34 Score=298.29 Aligned_cols=345 Identities=25% Similarity=0.385 Sum_probs=267.2
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch------------hhhhcC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS------------FKTSMK 311 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~------------~~~~~k 311 (732)
||++|++.++.||++..+.+|+++|.+.|++|.+++....+.+.+.+...+++++....... +.+..+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLR 80 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhC
Confidence 69999999999999999999999999999999999977777777777778998876654322 223679
Q ss_pred ccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH---hH----HHh-hhhhccccEEEEecHHhHHHhhhHHHhh
Q 004760 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---YF----DRA-KLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (732)
Q Consensus 312 ~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~---~~----~~~-~~~l~r~~~li~vS~~~~~~~~~~~~~e 383 (732)
||+||++.... .....+.....+...++|.+|..... +. ... .......+.++++|+..... .
T Consensus 81 ~div~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~----~--- 151 (365)
T cd03807 81 PDVVHTWMYHA--DLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEY----H--- 151 (365)
T ss_pred CCEEEeccccc--cHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHH----H---
Confidence 99999875432 22222323332456688877654322 11 111 12223366667887775332 2
Q ss_pred hhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 004760 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (732)
Q Consensus 384 ~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLe 463 (732)
...+... + .+.++|||+|...+.+.... ...+|+.++++++.+.++++|++.+.||++.+++
T Consensus 152 -~~~~~~~-------~----~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 213 (365)
T cd03807 152 -QAIGYPP-------K----KIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVARLHPQKDHATLLR 213 (365)
T ss_pred -HHcCCCh-------h----heeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEecccchhcCHHHHHH
Confidence 1122222 1 34789999999887665431 2456788999988999999999999999999999
Q ss_pred HHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCccc
Q 004760 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (732)
Q Consensus 464 A~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~ 543 (732)
|+..+.++.++
T Consensus 214 a~~~l~~~~~~--------------------------------------------------------------------- 224 (365)
T cd03807 214 AAALLLKKFPN--------------------------------------------------------------------- 224 (365)
T ss_pred HHHHHHHhCCC---------------------------------------------------------------------
Confidence 99999776554
Q ss_pred ccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHH
Q 004760 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA 623 (732)
Q Consensus 544 ~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysa 623 (732)
.+++++|.|+....++.... +..++.++|.|+|..+++..+|+.
T Consensus 225 ----------------~~l~i~G~~~~~~~~~~~~~--------------------~~~~~~~~v~~~g~~~~~~~~~~~ 268 (365)
T cd03807 225 ----------------ARLLLVGDGPDRANLELLAL--------------------KELGLEDKVILLGERSDVPALLNA 268 (365)
T ss_pred ----------------eEEEEecCCcchhHHHHHHH--------------------HhcCCCceEEEccccccHHHHHHh
Confidence 35677777765444433331 234788899999999999999999
Q ss_pred cCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAME 703 (732)
Q Consensus 624 ADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~ 703 (732)
||++++||. .|++|++++|||+||+|||+++.++..|++.+ +|++++++|. ++++++|..++++++.+.+++++
T Consensus 269 adi~v~ps~--~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~~--~~l~~~i~~l~~~~~~~~~~~~~ 342 (365)
T cd03807 269 LDVFVLSSL--SEGFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFLVPPGDP--EALAEAIEALLADPALRQALGEA 342 (365)
T ss_pred CCEEEeCCc--cccCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCCH--HHHHHHHHHHHhChHHHHHHHHH
Confidence 999999998 79999999999999999999999999999987 8999998887 99999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 004760 704 GRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 704 ~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+++.++++|+|++++++|.++|+
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 343 ARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999999999874
No 5
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3e-34 Score=305.93 Aligned_cols=343 Identities=20% Similarity=0.281 Sum_probs=254.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc---------------h---
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------------S--- 305 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~---------------~--- 305 (732)
||+++++. ..||+++++.+||++|.+.||+|.+++........ ....++.+...+... .
T Consensus 2 ki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (371)
T cd04962 2 KIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLD--EYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAE 78 (371)
T ss_pred ceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchh--hhccCeEEEEecccccchhhcchhHHHHHHHHHH
Confidence 78888764 57999999999999999999999999854322111 122344432111110 0
Q ss_pred hhhhcCccEEEeCCchhhHHHHHHHHhhcCC--CccEEEEEeech-------hHhHHHhhhhhccccEEEEecHHhHHHh
Q 004760 306 FKTSMKADLVIAGSAVCATWIDQYITRFPAG--GSQVVWWIMENR-------REYFDRAKLVLDRVKLLVFLSESQTKQW 376 (732)
Q Consensus 306 ~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~--~~~ivw~i~e~r-------~~~~~~~~~~l~r~~~li~vS~~~~~~~ 376 (732)
+....+||+||+|...... +..++.....+ ..++++.+|... ..+....+..+.+++.++++|+.....
T Consensus 79 ~i~~~~~divh~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~- 156 (371)
T cd04962 79 VAKRYKLDLLHVHYAVPHA-VAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQE- 156 (371)
T ss_pred HHhcCCccEEeecccCCcc-HHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHHH-
Confidence 2236799999998654322 22223322221 334666666321 111112233455688899999886432
Q ss_pred hhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 004760 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (732)
Q Consensus 377 ~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~K 456 (732)
. .+. ... ...+.+||||+|...|.+... ...+++++++++.++++++|++.+.|
T Consensus 157 ---~----~~~-~~~----------~~~i~vi~n~~~~~~~~~~~~--------~~~~~~~~~~~~~~~il~~g~l~~~K 210 (371)
T cd04962 157 ---T----YEL-FDI----------TKEIEVIPNFVDEDRFRPKPD--------EALKRRLGAPEGEKVLIHISNFRPVK 210 (371)
T ss_pred ---H----HHh-cCC----------cCCEEEecCCcCHhhcCCCch--------HHHHHhcCCCCCCeEEEEeccccccc
Confidence 2 111 111 123589999999887765432 34567889988999999999999999
Q ss_pred CHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccC
Q 004760 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (732)
Q Consensus 457 G~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~ 536 (732)
|++.+++|+..+.++.+
T Consensus 211 ~~~~li~a~~~l~~~~~--------------------------------------------------------------- 227 (371)
T cd04962 211 RIDDVIRIFAKVRKEVP--------------------------------------------------------------- 227 (371)
T ss_pred CHHHHHHHHHHHHhcCC---------------------------------------------------------------
Confidence 99999999998865422
Q ss_pred CCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhh
Q 004760 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (732)
Q Consensus 537 ~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~d 616 (732)
.+++++|.|+....++.++ +.+++.++|.|+|++++
T Consensus 228 -----------------------~~l~i~G~g~~~~~~~~~~---------------------~~~~~~~~v~~~g~~~~ 263 (371)
T cd04962 228 -----------------------ARLLLVGDGPERSPAERLA---------------------RELGLQDDVLFLGKQDH 263 (371)
T ss_pred -----------------------ceEEEEcCCcCHHHHHHHH---------------------HHcCCCceEEEecCccc
Confidence 2567788886655554444 23377789999999999
Q ss_pred HHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHH
Q 004760 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (732)
Q Consensus 617 v~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~ 696 (732)
+.++|+.||++|+||. .|+||++++|||+||+|||+|+.||..|++.++.+|++++++|. +++++++..+++|++.
T Consensus 264 ~~~~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~--~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 264 VEELLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDV--EAMAEYALSLLEDDEL 339 (371)
T ss_pred HHHHHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCH--HHHHHHHHHHHhCHHH
Confidence 9999999999999998 99999999999999999999999999999999999999999887 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 697 RERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 697 r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
+++|++++++.+.+.|+|+.+++++.++|+++
T Consensus 340 ~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 340 WQEFSRAARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999888999999999999999864
No 6
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=4e-33 Score=310.63 Aligned_cols=354 Identities=18% Similarity=0.180 Sum_probs=242.1
Q ss_pred CCCcHHHHHHHHHHHHHHCCC--EEEEEEeCCCC-----CChhHHH--hCCcEEEEcCCCch------------------
Q 004760 253 SMTGAPLSMMELATELLSCGA--TVSAVVLSKRG-----GLMPELA--RRKIKVLEDRGEPS------------------ 305 (732)
Q Consensus 253 s~gGA~~~~~eLA~~L~~~G~--~V~vv~l~~~g-----~l~~el~--~~gI~v~~~~~~~~------------------ 305 (732)
..||++.++.+||++|.+.|| +|.|++....+ ++..... ..|++++..+....
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 103 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADN 103 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHH
Confidence 358999999999999999997 99999953222 1211222 46888877654210
Q ss_pred h---hhh--cCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh----Hh----------------HH---Hhhh
Q 004760 306 F---KTS--MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR----EY----------------FD---RAKL 357 (732)
Q Consensus 306 ~---~~~--~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~----~~----------------~~---~~~~ 357 (732)
+ .++ .+||+||+|+.. +.++. .+.....+.+ ++..+|.... .+ .. ..+.
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~-~~~~~-~~~~~~~~~p-~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYAD-AGYVG-ARLSRLLGVP-LIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEE 180 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchh-HHHHH-HHHHHHhCCC-EEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHH
Confidence 1 112 379999999743 23332 2223334444 4555552110 00 00 0112
Q ss_pred hhccccEEEEecHHhHHHhhhHHHhhhhhc-cCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHH
Q 004760 358 VLDRVKLLVFLSESQTKQWLTWCEEEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKE 436 (732)
Q Consensus 358 ~l~r~~~li~vS~~~~~~~~~~~~~e~i~l-~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~ 436 (732)
.+.+.+.++++|...... .+ ... +..+ + .+.+||||+|++.|.+....+.....+..+ ++
T Consensus 181 ~~~~ad~ii~~s~~~~~~---~~----~~~~~~~~-------~----ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~-~~ 241 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEE---QY----ALYDSYQP-------E----RMQVIPPGVDLSRFYPPQSSEETSEIDNLL-AP 241 (439)
T ss_pred HHHhCCEEEECCHHHHHH---HH----HhccCCCc-------c----ceEEECCCcChhhcCCCCccccchhHHHHH-Hh
Confidence 344577777776543110 01 111 2222 2 358999999999987643221111122222 33
Q ss_pred hCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCccc
Q 004760 437 MGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (732)
Q Consensus 437 lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~ 516 (732)
++..+++++|+++||+.+.||++.||+|++.+......
T Consensus 242 ~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~------------------------------------------ 279 (439)
T TIGR02472 242 FLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEM------------------------------------------ 279 (439)
T ss_pred hccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhh------------------------------------------
Confidence 55666778999999999999999999999865321110
Q ss_pred ccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHH
Q 004760 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILE 596 (732)
Q Consensus 517 ~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~ 596 (732)
. .-++++|+|++...++.... .+.+++..
T Consensus 280 -----------------------------------------~-~l~li~G~g~~~~~l~~~~~---------~~~~~~~~ 308 (439)
T TIGR02472 280 -----------------------------------------A-NLVLVLGCRDDIRKMESQQR---------EVLQKVLL 308 (439)
T ss_pred -----------------------------------------c-cEEEEeCCccccccccHHHH---------HHHHHHHH
Confidence 0 01235677765444332211 12233333
Q ss_pred HHHhcCCCCCcEEEccc--hhhHHHHHHHc----CEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceE
Q 004760 597 FLSQHSNLSKAMLWTPA--TTRVASLYSAA----DVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTG 670 (732)
Q Consensus 597 ~l~~~l~l~~~V~f~G~--~~dv~~lysaA----Dv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~G 670 (732)
+...+++.++|+|+|+ .++++.+|++| |+||+||. .|+||++++||||||+|||+|+.||+.|+|.++.+|
T Consensus 309 -~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G 385 (439)
T TIGR02472 309 -LIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNG 385 (439)
T ss_pred -HHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcE
Confidence 3355689999999996 47899999987 99999998 999999999999999999999999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 671 LLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 671 ll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
++++++|+ ++|+++|.++++|++.+++|++++++.+.++|+|+.++++|.++++
T Consensus 386 ~lv~~~d~--~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 386 LLVDVLDL--EAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred EEeCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999998 9999999999999999999999999999999999999999999874
No 7
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=3.6e-33 Score=305.74 Aligned_cols=341 Identities=16% Similarity=0.193 Sum_probs=249.3
Q ss_pred eEEEEeCCC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch----------------
Q 004760 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS---------------- 305 (732)
Q Consensus 244 kIllI~h~l--s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~---------------- 305 (732)
||++|++.. ..||+++.+.+||++|.+.||+|.|++.........+....|++++..+....
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l 80 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLL 80 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHH
Confidence 678887755 46999999999999999999999999954333333334456777765543210
Q ss_pred --hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech-----hH-hHHH-hhhhhccccEEEEecHHhHHHh
Q 004760 306 --FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-----RE-YFDR-AKLVLDRVKLLVFLSESQTKQW 376 (732)
Q Consensus 306 --~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r-----~~-~~~~-~~~~l~r~~~li~vS~~~~~~~ 376 (732)
+..+.+||+||+++..........+.....+.+ +++..|... .. +... ......+.+.++++|......
T Consensus 81 ~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~-~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~- 158 (398)
T cd03796 81 RNILIRERITIVHGHQAFSALAHEALLHARTMGLK-TVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKEN- 158 (398)
T ss_pred HHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCc-EEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhH-
Confidence 222679999999975433222223333333433 666665321 00 1111 122345588899999885321
Q ss_pred hhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 004760 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (732)
Q Consensus 377 ~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~K 456 (732)
.. ...+..+ ..+.+||||+|...|.+.... .+++.++++++|++.+.|
T Consensus 159 --~~----~~~~~~~-----------~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~K 206 (398)
T cd03796 159 --TV----LRASLDP-----------ERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRK 206 (398)
T ss_pred --HH----HHhCCCh-----------hhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhc
Confidence 11 1112222 234899999999888654320 235678999999999999
Q ss_pred CHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccC
Q 004760 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (732)
Q Consensus 457 G~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~ 536 (732)
|++.+++|++.+.++.++
T Consensus 207 g~~~li~a~~~l~~~~~~-------------------------------------------------------------- 224 (398)
T cd03796 207 GIDLLVGIIPEICKKHPN-------------------------------------------------------------- 224 (398)
T ss_pred CHHHHHHHHHHHHhhCCC--------------------------------------------------------------
Confidence 999999999988766554
Q ss_pred CCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--
Q 004760 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT-- 614 (732)
Q Consensus 537 ~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~-- 614 (732)
.+++++|+|+..+.++.++ +.+++.++|.|+|..
T Consensus 225 -----------------------~~l~i~G~g~~~~~l~~~~---------------------~~~~l~~~v~~~G~~~~ 260 (398)
T cd03796 225 -----------------------VRFIIGGDGPKRILLEEMR---------------------EKYNLQDRVELLGAVPH 260 (398)
T ss_pred -----------------------EEEEEEeCCchHHHHHHHH---------------------HHhCCCCeEEEeCCCCH
Confidence 3678889887655555444 333788899999975
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCH
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~ 694 (732)
+++..+|++||++|+||. .|+||++++||||||+|||+|+.||..|++.++. +++.+ +|. ++|+++|.++++++
T Consensus 261 ~~~~~~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~-~~~~~-~~~--~~l~~~l~~~l~~~ 334 (398)
T cd03796 261 ERVRDVLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDM-ILLAE-PDV--ESIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhheeCCc-eeecC-CCH--HHHHHHHHHHHhCh
Confidence 789999999999999997 8999999999999999999999999999998763 44444 465 99999999999987
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 695 SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 695 ~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
.....+.+++++.++++|||++++++++++|++++.
T Consensus 335 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 335 RTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred hhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 777778899999999999999999999999999875
No 8
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=8.2e-33 Score=292.10 Aligned_cols=338 Identities=23% Similarity=0.316 Sum_probs=251.8
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--------------hhhhcCc
Q 004760 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--------------FKTSMKA 312 (732)
Q Consensus 247 lI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--------------~~~~~k~ 312 (732)
.|..+++.||+++.+++||++|.+.||+|.+++. .+.....+...|++++....... +....+|
T Consensus 2 ~~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (355)
T cd03819 2 QVLPALESGGVERGTLELARALVERGHRSLVASA--GGRLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKV 79 (355)
T ss_pred ccchhhccCcHHHHHHHHHHHHHHcCCEEEEEcC--CCchHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCC
Confidence 4567889999999999999999999999999873 45566677778888776543221 2236799
Q ss_pred cEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCc
Q 004760 313 DLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPA 392 (732)
Q Consensus 313 DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~ 392 (732)
|+||+++.... |.. ++.....+ .++++.+|....... .....+.+.+.++++|+..... +. ...+...
T Consensus 80 dii~~~~~~~~-~~~-~~~~~~~~-~~~i~~~h~~~~~~~-~~~~~~~~~~~vi~~s~~~~~~----~~---~~~~~~~- 147 (355)
T cd03819 80 DIVHARSRAPA-WSA-YLAARRTR-PPFVTTVHGFYSVNF-RYNAIMARGDRVIAVSNFIADH----IR---ENYGVDP- 147 (355)
T ss_pred CEEEECCCchh-HHH-HHHHHhcC-CCEEEEeCCchhhHH-HHHHHHHhcCEEEEeCHHHHHH----HH---HhcCCCh-
Confidence 99999875432 222 22222233 346666754322111 2234455688899999886442 21 0122211
Q ss_pred cccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhC
Q 004760 393 VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQE 472 (732)
Q Consensus 393 ~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~ 472 (732)
..+.+||||+|.+.|.+...... ....+|+.++++++.++++++|++.+.||++.+++++..+.+..
T Consensus 148 ----------~k~~~i~ngi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~ 214 (355)
T cd03819 148 ----------DRIRVIPRGVDLDRFDPGAVPPE---RILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDD 214 (355)
T ss_pred ----------hhEEEecCCccccccCccccchH---HHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcC
Confidence 23589999999998865432111 11337888898889999999999999999999999999997664
Q ss_pred CCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccc
Q 004760 473 PSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVS 552 (732)
Q Consensus 473 p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~ 552 (732)
++
T Consensus 215 ~~------------------------------------------------------------------------------ 216 (355)
T cd03819 215 PD------------------------------------------------------------------------------ 216 (355)
T ss_pred CC------------------------------------------------------------------------------
Confidence 43
Q ss_pred cCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEcc-
Q 004760 553 FGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINS- 631 (732)
Q Consensus 553 iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS- 631 (732)
.+++++|.|+..+.+. +.+.+ ..+.+++.++|.|+|+.+++..+|++||++++||
T Consensus 217 -------~~l~ivG~~~~~~~~~----------------~~~~~-~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~ 272 (355)
T cd03819 217 -------VHLLIVGDAQGRRFYY----------------AELLE-LIKRLGLQDRVTFVGHCSDMPAAYALADIVVSAST 272 (355)
T ss_pred -------eEEEEEECCcccchHH----------------HHHHH-HHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCC
Confidence 2566777775433222 22222 2334477889999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHH
Q 004760 632 QGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYL-LKNPSVRERMAMEGRKKVER 710 (732)
Q Consensus 632 ~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~L-L~n~~~r~~m~~~~r~~v~~ 710 (732)
. .|+||++++||||||+|||+++.||..|++.++.+|++++++|. ++++++|..+ ..+++.+++|++++++.+++
T Consensus 273 ~--~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 273 E--PEAFGRTAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDA--EALAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred C--CCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCH--HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 5 89999999999999999999999999999999999999998888 9999999654 45899999999999999999
Q ss_pred hcCHHHH
Q 004760 711 MYLKKHM 717 (732)
Q Consensus 711 ~ys~~~~ 717 (732)
+|+++.|
T Consensus 349 ~f~~~~~ 355 (355)
T cd03819 349 LFSYDRM 355 (355)
T ss_pred hhhhccC
Confidence 9999864
No 9
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=8.2e-33 Score=301.43 Aligned_cols=344 Identities=19% Similarity=0.242 Sum_probs=246.2
Q ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhH-HHhCCcEEEEcCCCc--------------h-----h---hh--
Q 004760 254 MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-LARRKIKVLEDRGEP--------------S-----F---KT-- 308 (732)
Q Consensus 254 ~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~e-l~~~gI~v~~~~~~~--------------~-----~---~~-- 308 (732)
.||++.++.+||++|.++||+|++++.......... -...|++++..+... . + ..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 599999999999999999999999996432211111 113578877553110 0 1 11
Q ss_pred hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh---Hh----------HHH--hhhhhccccEEEEecHHhH
Q 004760 309 SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR---EY----------FDR--AKLVLDRVKLLVFLSESQT 373 (732)
Q Consensus 309 ~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~---~~----------~~~--~~~~l~r~~~li~vS~~~~ 373 (732)
..+||+||+|+... .++. ++.....+.+ +++.+|.... .+ ... ....+..++.++++|+...
T Consensus 99 ~~~~Diih~h~~~~-~~~~-~~~~~~~~~p-~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~ 175 (405)
T TIGR03449 99 PGYYDLIHSHYWLS-GQVG-WLLRDRWGVP-LVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEA 175 (405)
T ss_pred CCCCCeEEechHHH-HHHH-HHHHHhcCCC-EEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHH
Confidence 24799999986332 2222 2222233444 5555543210 00 000 1123455788999988754
Q ss_pred HHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCC
Q 004760 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (732)
Q Consensus 374 ~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~ 453 (732)
+. +. ...+..+ ..+.+||||+|.+.|.+.+. ...+.+++++.++++|+++|++.
T Consensus 176 ~~----~~---~~~~~~~-----------~ki~vi~ngvd~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~l~ 229 (405)
T TIGR03449 176 RD----LV---RHYDADP-----------DRIDVVAPGADLERFRPGDR--------ATERARLGLPLDTKVVAFVGRIQ 229 (405)
T ss_pred HH----HH---HHcCCCh-----------hhEEEECCCcCHHHcCCCcH--------HHHHHhcCCCCCCcEEEEecCCC
Confidence 32 10 1112211 23589999999988865432 34577899988889999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCccc
Q 004760 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (732)
Q Consensus 454 ~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 533 (732)
+.||++.+++|++.+.++.++.
T Consensus 230 ~~K~~~~li~a~~~l~~~~~~~---------------------------------------------------------- 251 (405)
T TIGR03449 230 PLKAPDVLLRAVAELLDRDPDR---------------------------------------------------------- 251 (405)
T ss_pred cccCHHHHHHHHHHHHhhCCCc----------------------------------------------------------
Confidence 9999999999999997765540
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccc
Q 004760 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (732)
Q Consensus 534 ~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~ 613 (732)
..+++++|.+.... .++.+++ +.+.+.+++.++|.|+|+
T Consensus 252 -------------------------~~~l~ivG~~~~~g---------------~~~~~~l-~~~~~~~~l~~~v~~~g~ 290 (405)
T TIGR03449 252 -------------------------NLRVIVVGGPSGSG---------------LATPDAL-IELAAELGIADRVRFLPP 290 (405)
T ss_pred -------------------------ceEEEEEeCCCCCc---------------chHHHHH-HHHHHHcCCCceEEECCC
Confidence 12456666421100 0111122 222234488889999997
Q ss_pred h--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHh
Q 004760 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (732)
Q Consensus 614 ~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL 691 (732)
. +++.++|+.||++|+||. .|+||++++|||++|+|||+++.||..|++.++.+|++++++|. ++|+++|.+++
T Consensus 291 ~~~~~~~~~l~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~--~~la~~i~~~l 366 (405)
T TIGR03449 291 RPPEELVHVYRAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDP--ADWADALARLL 366 (405)
T ss_pred CCHHHHHHHHHhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCH--HHHHHHHHHHH
Confidence 5 789999999999999998 99999999999999999999999999999999999999998888 99999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 692 KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 692 ~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
++++.+++|+.++++.++ +|+|+.+++++.++|.+++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~-~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 367 DDPRTRIRMGAAAVEHAA-GFSWAATADGLLSSYRDALA 404 (405)
T ss_pred hCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999875 69999999999999998764
No 10
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=2.9e-33 Score=301.94 Aligned_cols=347 Identities=18% Similarity=0.248 Sum_probs=246.2
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-ChhHHHhCCcEEEEcCCC--ch--------------
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELARRKIKVLEDRGE--PS-------------- 305 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~~el~~~gI~v~~~~~~--~~-------------- 305 (732)
+||+++.++++.||+++++.+||++|.++||+|++++...... ...+....++++...+.. ..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 4899999999999999999999999999999999999533221 223333333555432210 00
Q ss_pred --------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh------Hh----HHH----h-hhhhccc
Q 004760 306 --------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------EY----FDR----A-KLVLDRV 362 (732)
Q Consensus 306 --------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~------~~----~~~----~-~~~l~r~ 362 (732)
+....++|+||+++.....+ ++ ..... .++++++|.... .+ +.. . +..+..+
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~~~---~~-~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 155 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSACVP---LL-KLFSP-SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMA 155 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchHHH---HH-HHhcC-CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCc
Confidence 12356999999886433222 11 22222 456666653211 11 110 0 1223447
Q ss_pred cEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCC
Q 004760 363 KLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQ 442 (732)
Q Consensus 363 ~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~ 442 (732)
+.+++.|+...+. +... ++..+ ...+.+||||+|.+.|.+.... ..++......+
T Consensus 156 d~ii~~s~~~~~~----~~~~---~~~~~----------~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~ 210 (392)
T cd03805 156 DKIVVNSNFTASV----FKKT---FPSLA----------KNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSG 210 (392)
T ss_pred eEEEEcChhHHHH----HHHH---hcccc----------cCCcceeCCCcCHHHcCccccc--------ccccccccCCC
Confidence 8889998886442 2110 11111 0112589999999888664321 12233455677
Q ss_pred CEEEEEEecCCCCCCHHHHHHHHHHhHHhC---CCCchhhhhhccccccccccccccccccccccccccccccCcccccc
Q 004760 443 DMLVLSLSSINPGKGQLLLVESAQLMIEQE---PSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELS 519 (732)
Q Consensus 443 ~~lil~vGri~~~KG~d~LLeA~~~l~~~~---p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~ 519 (732)
.++|+++|++.+.||++.+++|+..+.++. ++
T Consensus 211 ~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~--------------------------------------------- 245 (392)
T cd03805 211 KKTFLSINRFERKKNIALAIEAFAILKDKLAEFKN--------------------------------------------- 245 (392)
T ss_pred ceEEEEEeeecccCChHHHHHHHHHHHhhcccccC---------------------------------------------
Confidence 889999999999999999999999997665 32
Q ss_pred cchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHH
Q 004760 520 VSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLS 599 (732)
Q Consensus 520 ~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~ 599 (732)
.+++++|+|+.+. ..+..|..++.+.+.
T Consensus 246 ----------------------------------------~~l~i~G~~~~~~------------~~~~~~~~~l~~~~~ 273 (392)
T cd03805 246 ----------------------------------------VRLVIAGGYDPRV------------AENVEYLEELQRLAE 273 (392)
T ss_pred ----------------------------------------eEEEEEcCCCCCC------------chhHHHHHHHHHHHH
Confidence 3567777765321 111234444444444
Q ss_pred hcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCC
Q 004760 600 QHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 600 ~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d 677 (732)
+.+++.++|.|+|++ +++..+|++||++++||. .|+||++++||||||+|||+|+.||..|++.++.+|+++++ |
T Consensus 274 ~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~ 350 (392)
T cd03805 274 ELLLLEDQVIFLPSISDSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-T 350 (392)
T ss_pred HhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-C
Confidence 425888999999987 567899999999999998 99999999999999999999999999999999999999875 6
Q ss_pred CcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKL 721 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~ 721 (732)
+ ++++++|..++++++.+++|++++++.++++|+|+.+++++
T Consensus 351 ~--~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 351 P--EEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred H--HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 6 99999999999999999999999999999999999998864
No 11
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.6e-32 Score=301.33 Aligned_cols=350 Identities=17% Similarity=0.164 Sum_probs=257.4
Q ss_pred CeEEEEeCCC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-----------hhHHHhCCcEEEEcCCCc-----
Q 004760 243 RKFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-----------MPELARRKIKVLEDRGEP----- 304 (732)
Q Consensus 243 ~kIllI~h~l--s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l-----------~~el~~~gI~v~~~~~~~----- 304 (732)
.||++|++.. ..+|++..+.+||++|.+.||+|+|++.....+. ..+....|++++..+...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 3789998765 3589999999999999999999999995432111 011124688887654321
Q ss_pred h-----------------hhh--hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech-----------hHhHHH
Q 004760 305 S-----------------FKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-----------REYFDR 354 (732)
Q Consensus 305 ~-----------------~~~--~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r-----------~~~~~~ 354 (732)
. +.+ ..+||+||+++..........+.....+.+ +++.++... ...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~-~v~~~~d~~~~~~~~~~~~~~~~~~~ 159 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGAR-TWLHIQDYEVDAAFGLGLLKGGKVAR 159 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCC-EEEEeccCCHHHHHHhCCccCcHHHH
Confidence 0 111 268999999864332222233333444444 444443211 111111
Q ss_pred -----hhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHh
Q 004760 355 -----AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLL 429 (732)
Q Consensus 355 -----~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~ 429 (732)
.+..+..++.++++|+...+. + ...+..+ ..+.+||||+|.+.|.+.... .
T Consensus 160 ~~~~~~~~~~~~ad~ii~~S~~~~~~----~----~~~~~~~-----------~~i~vi~ngvd~~~~~~~~~~-----~ 215 (412)
T PRK10307 160 LATAFERSLLRRFDNVSTISRSMMNK----A----REKGVAA-----------EKVIFFPNWSEVARFQPVADA-----D 215 (412)
T ss_pred HHHHHHHHHHhhCCEEEecCHHHHHH----H----HHcCCCc-----------ccEEEECCCcCHhhcCCCCcc-----c
Confidence 122344588999999986442 2 1122221 235899999999988764321 1
Q ss_pred HHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccc
Q 004760 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSD 509 (732)
Q Consensus 430 r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~ 509 (732)
+..+|+.++++++.++|+++|++.+.||++.|++|++.+. +.++
T Consensus 216 ~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~-~~~~----------------------------------- 259 (412)
T PRK10307 216 VDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLR-DRPD----------------------------------- 259 (412)
T ss_pred hHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhc-cCCC-----------------------------------
Confidence 2457888999988899999999999999999999998773 2232
Q ss_pred cccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChh
Q 004760 510 DVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVP 589 (732)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~ 589 (732)
.+++++|+|+..+.++.++.
T Consensus 260 --------------------------------------------------~~l~ivG~g~~~~~l~~~~~---------- 279 (412)
T PRK10307 260 --------------------------------------------------LIFVICGQGGGKARLEKMAQ---------- 279 (412)
T ss_pred --------------------------------------------------eEEEEECCChhHHHHHHHHH----------
Confidence 36888999987666665553
Q ss_pred hHHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCC----CcHHHHHHHHcCCCEEEcCCCC--hh
Q 004760 590 YVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGET----FGRVTIEAMAFGVPVLGTDAGG--TK 661 (732)
Q Consensus 590 y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Eg----fg~vilEAMA~GlPVI~td~gG--~~ 661 (732)
.++++ +|.|+|++ +++.++|++||++|+||. .|+ +|.+++||||||+|||+|+.+| ..
T Consensus 280 -----------~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~ 345 (412)
T PRK10307 280 -----------CRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPGTELG 345 (412)
T ss_pred -----------HcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCCchHH
Confidence 23665 79999975 689999999999999998 787 6888999999999999999876 56
Q ss_pred hhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 662 EIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 662 EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
|+++ .+|++++++|+ ++|+++|.++++|++.+++|++++++.++++|+|+.++++|.++|++++..
T Consensus 346 ~~i~--~~G~~~~~~d~--~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 346 QLVE--GIGVCVEPESV--EALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHh--CCcEEeCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 8887 58999999988 999999999999999999999999999999999999999999999998764
No 12
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=3.4e-32 Score=305.10 Aligned_cols=341 Identities=21% Similarity=0.263 Sum_probs=248.5
Q ss_pred ccCCeEEEEeCCC---CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCC-------------
Q 004760 240 VWSRKFILIFHEL---SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE------------- 303 (732)
Q Consensus 240 ~~~~kIllI~h~l---s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~------------- 303 (732)
.++.||+++++.. ..||.+..+.+|+++|.+.||+|.+++..... ..+ ..++.++.....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~--~~~--~~g~~v~~~~~~~~~~~~~~~~~~~ 131 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV--PQE--FHGAKVIGSWSFPCPFYQKVPLSLA 131 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC--Ccc--ccCceeeccCCcCCccCCCceeecc
Confidence 6779999998754 46999999999999999999999999954322 111 134444321110
Q ss_pred --ch---hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHH-------------HhhhhhccccEE
Q 004760 304 --PS---FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD-------------RAKLVLDRVKLL 365 (732)
Q Consensus 304 --~~---~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~-------------~~~~~l~r~~~l 365 (732)
.. +.+..+||+||+++.....+.. ++.....+.+ ++...|.....+.. ..+......+.+
T Consensus 132 ~~~~l~~~i~~~kpDiIh~~~~~~~~~~~-~~~ak~~~ip-~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~i 209 (465)
T PLN02871 132 LSPRIISEVARFKPDLIHASSPGIMVFGA-LFYAKLLCVP-LVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLT 209 (465)
T ss_pred CCHHHHHHHHhCCCCEEEECCCchhHHHH-HHHHHHhCCC-EEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEE
Confidence 01 2336899999998753333322 2222334445 33334322111110 011223347888
Q ss_pred EEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhC-CCCCCE
Q 004760 366 VFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG-LTDQDM 444 (732)
Q Consensus 366 i~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lg-l~~~~~ 444 (732)
+++|+..... . ...+..+ ...+.+||||+|...|.+.... ..++..+. ..++++
T Consensus 210 i~~S~~~~~~----l----~~~~~~~----------~~kv~vi~nGvd~~~f~p~~~~-------~~~~~~~~~~~~~~~ 264 (465)
T PLN02871 210 LVTSPALGKE----L----EAAGVTA----------ANRIRVWNKGVDSESFHPRFRS-------EEMRARLSGGEPEKP 264 (465)
T ss_pred EECCHHHHHH----H----HHcCCCC----------cCeEEEeCCccCccccCCcccc-------HHHHHHhcCCCCCCe
Confidence 9998876432 2 1122111 1235899999999988764321 22344443 334678
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhh
Q 004760 445 LVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSES 524 (732)
Q Consensus 445 lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~ 524 (732)
+|+++|++.+.||++.++++++.+ ++
T Consensus 265 ~i~~vGrl~~~K~~~~li~a~~~~----~~-------------------------------------------------- 290 (465)
T PLN02871 265 LIVYVGRLGAEKNLDFLKRVMERL----PG-------------------------------------------------- 290 (465)
T ss_pred EEEEeCCCchhhhHHHHHHHHHhC----CC--------------------------------------------------
Confidence 899999999999999999988754 33
Q ss_pred hhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCC
Q 004760 525 FTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL 604 (732)
Q Consensus 525 ~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l 604 (732)
.+++++|+|+..+.++.++. +
T Consensus 291 -----------------------------------~~l~ivG~G~~~~~l~~~~~-----------------------~- 311 (465)
T PLN02871 291 -----------------------------------ARLAFVGDGPYREELEKMFA-----------------------G- 311 (465)
T ss_pred -----------------------------------cEEEEEeCChHHHHHHHHhc-----------------------c-
Confidence 25788999987777666552 1
Q ss_pred CCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc---CceEEEECCCCCc
Q 004760 605 SKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH---NVTGLLHPPGHPG 679 (732)
Q Consensus 605 ~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~---g~~Gll~~~~d~~ 679 (732)
.+|.|+|++ +++..+|++||++|+||. .|+||++++||||||+|||+++.||+.|++++ +.+|++++++|+
T Consensus 312 -~~V~f~G~v~~~ev~~~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~- 387 (465)
T PLN02871 312 -TPTVFTGMLQGDELSQAYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDV- 387 (465)
T ss_pred -CCeEEeccCCHHHHHHHHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCH-
Confidence 369999987 789999999999999998 99999999999999999999999999999998 899999999988
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHhhc
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQ-VIYKCMK 730 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~e-v~~~~l~ 730 (732)
++|+++|..+++|++.+++|++++++.++ .|+|+.+++++++ +|+++++
T Consensus 388 -~~la~~i~~ll~~~~~~~~~~~~a~~~~~-~fsw~~~a~~l~~~~Y~~~~~ 437 (465)
T PLN02871 388 -DDCVEKLETLLADPELRERMGAAAREEVE-KWDWRAATRKLRNEQYSAAIW 437 (465)
T ss_pred -HHHHHHHHHHHhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886 6999999999998 6887764
No 13
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=4.6e-32 Score=285.89 Aligned_cols=342 Identities=20% Similarity=0.283 Sum_probs=245.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch-------------hhhhc
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS-------------FKTSM 310 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~-------------~~~~~ 310 (732)
+|+++++.++.||++..+.+|+++|.+.||+|.+++...... ..... ....+........ +.+..
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESE-VKPPI-DATIILNLNMSKNPLSFLLALWKLRKILRQF 78 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCC-ccchh-hccceEEecccccchhhHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999654332 22222 2222211111110 23367
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH--hHHHhhhhhc-cccEEEEecHHhHHHhhhHHHhhhhhc
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE--YFDRAKLVLD-RVKLLVFLSESQTKQWLTWCEEEKLKL 387 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~--~~~~~~~~l~-r~~~li~vS~~~~~~~~~~~~~e~i~l 387 (732)
+||+||+++..+. .+..++... ...+.++...|..... .......... ..+..+.+|...... + +..
T Consensus 79 ~pdiv~~~~~~~~-~~~~l~~~~-~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~----~----~~~ 148 (360)
T cd04951 79 KPDVVHAHMFHAN-IFARLLRLF-LPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDY----F----IAS 148 (360)
T ss_pred CCCEEEEcccchH-HHHHHHHhh-CCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHH----H----Hhc
Confidence 9999999875432 222222222 3334455555433211 1011111111 244455666654221 2 111
Q ss_pred cCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHH
Q 004760 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (732)
Q Consensus 388 ~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~ 467 (732)
+..+ ...+.+||||+|.+.|.+.... +..+++.+++++++++++++|++.+.||++.+++|+..
T Consensus 149 ~~~~----------~~~~~~i~ng~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~ 212 (360)
T cd04951 149 KAFN----------ANKSFVVYNGIDTDRFRKDPAR------RLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAK 212 (360)
T ss_pred cCCC----------cccEEEEccccchhhcCcchHH------HHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHH
Confidence 1111 1134899999999888665431 24678899999889999999999999999999999999
Q ss_pred hHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCC
Q 004760 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (732)
Q Consensus 468 l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~ 547 (732)
+.++.|+
T Consensus 213 l~~~~~~------------------------------------------------------------------------- 219 (360)
T cd04951 213 LLSDYLD------------------------------------------------------------------------- 219 (360)
T ss_pred HHhhCCC-------------------------------------------------------------------------
Confidence 8766554
Q ss_pred CCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEE
Q 004760 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVY 627 (732)
Q Consensus 548 ~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~ 627 (732)
.+++++|+|+..+.++..+. .+++.++|.|+|+++++..+|+.||++
T Consensus 220 ------------~~l~i~G~g~~~~~~~~~~~---------------------~~~~~~~v~~~g~~~~~~~~~~~ad~~ 266 (360)
T cd04951 220 ------------IKLLIAGDGPLRATLERLIK---------------------ALGLSNRVKLLGLRDDIAAYYNAADLF 266 (360)
T ss_pred ------------eEEEEEcCCCcHHHHHHHHH---------------------hcCCCCcEEEecccccHHHHHHhhceE
Confidence 35778888876655554442 237778999999999999999999999
Q ss_pred EEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Q 004760 628 VINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL-KNPSVRERMAMEGRK 706 (732)
Q Consensus 628 V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL-~n~~~r~~m~~~~r~ 706 (732)
++||. .|+||++++|||++|+|||+++.|+..|++++ +|++++++|+ ++++++|..++ .+++.+..++.+ ++
T Consensus 267 v~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~~~~~~~~--~~~~~~i~~ll~~~~~~~~~~~~~-~~ 339 (360)
T cd04951 267 VLSSA--WEGFGLVVAEAMACELPVVATDAGGVREVVGD--SGLIVPISDP--EALANKIDEILKMSGEERDIIGAR-RE 339 (360)
T ss_pred Eeccc--ccCCChHHHHHHHcCCCEEEecCCChhhEecC--CceEeCCCCH--HHHHHHHHHHHhCCHHHHHHHHHH-HH
Confidence 99998 89999999999999999999999999999987 7889988887 99999999999 466677777766 88
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 004760 707 KVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 707 ~v~~~ys~~~~~~~~~ev~~ 726 (732)
.+.+.|+|+.++++|.++|+
T Consensus 340 ~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 340 RIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHhcCHHHHHHHHHHHhh
Confidence 88889999999999999986
No 14
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=2.9e-32 Score=294.98 Aligned_cols=343 Identities=17% Similarity=0.192 Sum_probs=243.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChh---HHH--hCCcEEEEcCCCc--hh-------h--
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELA--RRKIKVLEDRGEP--SF-------K-- 307 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~---el~--~~gI~v~~~~~~~--~~-------~-- 307 (732)
||+++++.+..||++.++++++..|.+.||+|.++++....+... +.. -.|.++ ...... .+ .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI-ELSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC-CCCHHHHHHHHHHHHHHhcc
Confidence 699999999999999999999999999999999998655433211 111 124343 111111 01 1
Q ss_pred --hhcCccEEEeCCchhhHHHHHHHHhhcC-CCccEEEEEeechhH----hHHHhhhhhccccEEEEecHHhHHHhhhHH
Q 004760 308 --TSMKADLVIAGSAVCATWIDQYITRFPA-GGSQVVWWIMENRRE----YFDRAKLVLDRVKLLVFLSESQTKQWLTWC 380 (732)
Q Consensus 308 --~~~k~DlVia~Sav~~~~i~~~i~~~~~-~~~~ivw~i~e~r~~----~~~~~~~~l~r~~~li~vS~~~~~~~~~~~ 380 (732)
...+||+||+|+..... + ...... +.+ ++++.|..... .....+..+.+.+.+++.+...
T Consensus 80 ~~~~~~~Dvv~~h~~~~~~-~---~~~~~~~~~~-~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-------- 146 (372)
T cd03792 80 PLLDLDADVVVIHDPQPLA-L---PLFKKKRGRP-WIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHLPEY-------- 146 (372)
T ss_pred ccccCCCCEEEECCCCchh-H---HHhhhcCCCe-EEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecHHHh--------
Confidence 14589999999765321 1 111122 334 55566643211 1111233444566666665221
Q ss_pred HhhhhhccCCCccccccCCCccceEEeecCCCCCCCCC--chhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCH
Q 004760 381 EEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSS--PEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQ 458 (732)
Q Consensus 381 ~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~--~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~ 458 (732)
......+ . . .+||||+|..... ..... .+..+|+++|++++.++|+++||+.+.||+
T Consensus 147 ----~~~~~~~--------~---~-~vipngvd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~ 205 (372)
T cd03792 147 ----VPPQVPP--------R---K-VIIPPSIDPLSGKNRELSPA-----DIEYILEKYGIDPERPYITQVSRFDPWKDP 205 (372)
T ss_pred ----cCCCCCC--------c---e-EEeCCCCCCCccccCCCCHH-----HHHHHHHHhCCCCCCcEEEEEeccccccCc
Confidence 1111111 1 1 3899999975321 11111 124678889999899999999999999999
Q ss_pred HHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCC
Q 004760 459 LLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLS 538 (732)
Q Consensus 459 d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~ 538 (732)
+.+++|+..+.++.++
T Consensus 206 ~~ll~a~~~l~~~~~~---------------------------------------------------------------- 221 (372)
T cd03792 206 FGVIDAYRKVKERVPD---------------------------------------------------------------- 221 (372)
T ss_pred HHHHHHHHHHHhhCCC----------------------------------------------------------------
Confidence 9999999998766554
Q ss_pred CCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch----
Q 004760 539 PSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT---- 614 (732)
Q Consensus 539 p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~---- 614 (732)
.+++++|+|+..+. ...+..+.+.+..++.++|.|+|..
T Consensus 222 ---------------------~~l~i~G~g~~~~~----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 264 (372)
T cd03792 222 ---------------------PQLVLVGSGATDDP----------------EGWIVYEEVLEYAEGDPDIHVLTLPPVSD 264 (372)
T ss_pred ---------------------CEEEEEeCCCCCCc----------------hhHHHHHHHHHHhCCCCCeEEEecCCCCH
Confidence 25677787754211 1112222233234677889998865
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCH
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~ 694 (732)
+++..+|++||++++||. .|+||++++||||||+|||+|+.+|..++|.++.+|+++++ . ++++.+|..++.++
T Consensus 265 ~~~~~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~--~--~~~a~~i~~ll~~~ 338 (372)
T cd03792 265 LEVNALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLVDT--V--EEAAVRILYLLRDP 338 (372)
T ss_pred HHHHHHHHhCeEEEeCCC--ccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEeCC--c--HHHHHHHHHHHcCH
Confidence 789999999999999998 99999999999999999999999999999999999999874 3 67899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 695 SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 695 ~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
+.+++|++++++.+.+.|+|+.++++++++|+++
T Consensus 339 ~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 339 ELRRKMGANAREHVRENFLITRHLKDYLYLISKL 372 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 9999999999999988999999999999999863
No 15
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=1.5e-32 Score=290.43 Aligned_cols=328 Identities=16% Similarity=0.156 Sum_probs=244.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-CChhHHHhCCcEEEEcCCCch-----------hhhhcC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPELARRKIKVLEDRGEPS-----------FKTSMK 311 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-~l~~el~~~gI~v~~~~~~~~-----------~~~~~k 311 (732)
||+++++.+..||++..+.+++++|.+.||+|.+++..... .+...+...++.++....... +....+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999999976544 355667778888876443321 223679
Q ss_pred ccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH---hHH-----H-hhhhhccccEEEEecHHhHHHhhhHHHh
Q 004760 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---YFD-----R-AKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (732)
Q Consensus 312 ~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~---~~~-----~-~~~~l~r~~~li~vS~~~~~~~~~~~~~ 382 (732)
||+||+++... .++...+... .+.+.++.+.|..... +.. . .......++.++++|+..... .
T Consensus 81 ~Dvv~~~~~~~-~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~----~-- 152 (358)
T cd03812 81 YDIVHVHGSSA-SGFILLAAKK-AGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW----L-- 152 (358)
T ss_pred CCEEEEeCcch-hHHHHHHHhh-CCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHH----H--
Confidence 99999997653 3333333333 4445444444432110 000 0 112233477888888875332 2
Q ss_pred hhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 004760 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (732)
Q Consensus 383 e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LL 462 (732)
... ..+ ..+.+||||+|...+.+.... +.. ++..+..++.+.|+++|++.+.||++.++
T Consensus 153 --~~~-~~~-----------~~~~vi~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li 211 (358)
T cd03812 153 --FGK-VKN-----------KKFKVIPNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLI 211 (358)
T ss_pred --HhC-CCc-----------ccEEEEeccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHH
Confidence 111 111 234899999999887654331 122 56678888899999999999999999999
Q ss_pred HHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcc
Q 004760 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (732)
Q Consensus 463 eA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf 542 (732)
+|+..+.++.++
T Consensus 212 ~a~~~l~~~~~~-------------------------------------------------------------------- 223 (358)
T cd03812 212 EIFAELLKKNPN-------------------------------------------------------------------- 223 (358)
T ss_pred HHHHHHHHhCCC--------------------------------------------------------------------
Confidence 999999877665
Q ss_pred cccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHH
Q 004760 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS 622 (732)
Q Consensus 543 ~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lys 622 (732)
.+++++|+|+..+.++..+. .+++.++|.|+|+.+++.++|+
T Consensus 224 -----------------~~l~ivG~g~~~~~~~~~~~---------------------~~~~~~~v~~~g~~~~~~~~~~ 265 (358)
T cd03812 224 -----------------AKLLLVGDGELEEEIKKKVK---------------------ELGLEDKVIFLGVRNDVPELLQ 265 (358)
T ss_pred -----------------eEEEEEeCCchHHHHHHHHH---------------------hcCCCCcEEEecccCCHHHHHH
Confidence 35778888876665555442 3378899999999999999999
Q ss_pred HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 623 AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAM 702 (732)
Q Consensus 623 aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~ 702 (732)
.||++|+||. .|+||++++||||+|+|||+|+.||..|++++ ..|++..++++ ++++++|.++++||+.++.+..
T Consensus 266 ~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~-~~~~~~~~~~~--~~~a~~i~~l~~~~~~~~~~~~ 340 (358)
T cd03812 266 AMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEVDLTD-LVKFLSLDESP--EIWAEEILKLKSEDRRERSSES 340 (358)
T ss_pred hcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc-CccEEeCCCCH--HHHHHHHHHHHhCcchhhhhhh
Confidence 9999999998 89999999999999999999999999999998 45666666666 9999999999999999999988
Q ss_pred HHHHHHHHh
Q 004760 703 EGRKKVERM 711 (732)
Q Consensus 703 ~~r~~v~~~ 711 (732)
.+.......
T Consensus 341 ~~~~~~~~~ 349 (358)
T cd03812 341 IKKKGLDAD 349 (358)
T ss_pred hhhccchhh
Confidence 887665543
No 16
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=6.8e-32 Score=305.35 Aligned_cols=348 Identities=17% Similarity=0.205 Sum_probs=249.8
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHH----CCC--------EEEEEEe--CCCCC---ChhHHHhCCcEEEEcCCCch-
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLS----CGA--------TVSAVVL--SKRGG---LMPELARRKIKVLEDRGEPS- 305 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~----~G~--------~V~vv~l--~~~g~---l~~el~~~gI~v~~~~~~~~- 305 (732)
.+++++.+|+.||||+.+.++|-++++ .|- .|.++|= ...++ +.+.+...+|++........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGN 242 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchh
Confidence 478999999999999999966666654 333 4556653 23333 35667778888865321111
Q ss_pred --------------------------------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech----h
Q 004760 306 --------------------------------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----R 349 (732)
Q Consensus 306 --------------------------------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r----~ 349 (732)
+.++.+||+||++.. ..++...+++..++.+.++...|-.. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~--~a~l~g~laA~lagvpviv~~~h~~~~~~~~ 320 (578)
T PRK15490 243 LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQD--GACLMIALAALIAGVPRIQLGLRGLPPVVRK 320 (578)
T ss_pred hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCc--ccHHHHHHHHHhcCCCEEEEeecccCCcchh
Confidence 344899999998863 34455667777778886666543211 1
Q ss_pred HhHHHhhhhhccccE------EEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhH
Q 004760 350 EYFDRAKLVLDRVKL------LVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR 423 (732)
Q Consensus 350 ~~~~~~~~~l~r~~~------li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ 423 (732)
+........+.+... ++..+...+..... .++.++ ..+.+||||+|++.|.+....
T Consensus 321 r~~~~e~~~~~~a~~i~~~sd~v~~s~~v~~~l~~-------~lgip~-----------~KI~VIyNGVD~~rf~p~~~~ 382 (578)
T PRK15490 321 RLFKPEYEPLYQALAVVPGVDFMSNNHCVTRHYAD-------WLKLEA-----------KHFQVVYNGVLPPSTEPSSEV 382 (578)
T ss_pred hHHHHHHHHhhhhceeEecchhhhccHHHHHHHHH-------HhCCCH-----------HHEEEEeCCcchhhcCccchh
Confidence 111111111111122 23333332221111 123322 245899999999988775421
Q ss_pred HHhHHhHHHHHH--HhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccc
Q 004760 424 EKRNLLRDSVRK--EMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRG 501 (732)
Q Consensus 424 ekr~~~r~~~R~--~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g 501 (732)
. ...|. ..++++++++|+++|++.+.||++.+|+++..+.++.|+
T Consensus 383 ~------~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pd--------------------------- 429 (578)
T PRK15490 383 P------HKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPA--------------------------- 429 (578)
T ss_pred h------HHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCC---------------------------
Confidence 1 11222 245566778899999999999999999999988766554
Q ss_pred cccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhcc
Q 004760 502 RGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSV 581 (732)
Q Consensus 502 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~ 581 (732)
.+++++|+|+..+.++.++.
T Consensus 430 ----------------------------------------------------------irLvIVGdG~~~eeLk~la~-- 449 (578)
T PRK15490 430 ----------------------------------------------------------TRFVLVGDGDLRAEAQKRAE-- 449 (578)
T ss_pred ----------------------------------------------------------eEEEEEeCchhHHHHHHHHH--
Confidence 36888999987776666653
Q ss_pred CCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChh
Q 004760 582 GSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661 (732)
Q Consensus 582 G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~ 661 (732)
.+++.++|+|+|+.+++..+|++||+||+||. .|+||++++||||||+|||+|+.||..
T Consensus 450 -------------------elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~ 508 (578)
T PRK15490 450 -------------------QLGILERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSA 508 (578)
T ss_pred -------------------HcCCCCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcH
Confidence 33788999999999999999999999999998 999999999999999999999999999
Q ss_pred hhhccCceEEEECCCCCcHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 662 EIVEHNVTGLLHPPGHPGAQVLAQNL---RYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 662 EiVe~g~~Gll~~~~d~~~e~La~aL---~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
|+|.++.+|++++++|. +.+++++ ..+.+..+.+..|++++++.++++|||+.|+++|.++|..
T Consensus 509 EiV~dG~nG~LVp~~D~--~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 509 ECFIEGVSGFILDDAQT--VNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHcccCCcEEEECCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 99999999999999887 7787776 4455555566679999999999999999999999999975
No 17
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=3.6e-31 Score=292.86 Aligned_cols=340 Identities=20% Similarity=0.246 Sum_probs=247.2
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-Ch-hHHH----hCCcEEEEcC----------------
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LM-PELA----RRKIKVLEDR---------------- 301 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~-~el~----~~gI~v~~~~---------------- 301 (732)
||.+|+...- .=.|..+.+-...|.++|++|.++++..... .. +..+ ...+.++...
T Consensus 2 ~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T PRK15427 2 KVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQTL 80 (406)
T ss_pred eEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhHh
Confidence 6788877765 4568899999999999999999999754321 11 1111 1111111000
Q ss_pred -------------CCc----h-----------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech---hH
Q 004760 302 -------------GEP----S-----------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---RE 350 (732)
Q Consensus 302 -------------~~~----~-----------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r---~~ 350 (732)
... . ..+..+||+||+|...+. +....+.....-..+++.+.|..- ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~-~~~~~~~~~~~~~~~~~~t~Hg~d~~~~~ 159 (406)
T PRK15427 81 RGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAG-VTAAKLRELGVLRGKIATIFHGIDISSRE 159 (406)
T ss_pred hhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHH-HHHHHHHHhCCCCCCeEEEEcccccccch
Confidence 000 0 012568999999986543 222333332111122344555311 11
Q ss_pred ----hHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHh
Q 004760 351 ----YFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKR 426 (732)
Q Consensus 351 ----~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr 426 (732)
+.......+.+.+.++++|+..... . ...+..+ ..+.+||||+|...|.+....
T Consensus 160 ~~~~~~~~~~~~~~~ad~vv~~S~~~~~~----l----~~~g~~~-----------~ki~vi~nGvd~~~f~~~~~~--- 217 (406)
T PRK15427 160 VLNHYTPEYQQLFRRGDLMLPISDLWAGR----L----QKMGCPP-----------EKIAVSRMGVDMTRFSPRPVK--- 217 (406)
T ss_pred hhhhhhHHHHHHHHhCCEEEECCHHHHHH----H----HHcCCCH-----------HHEEEcCCCCCHHHcCCCccc---
Confidence 1122334556788999999985432 2 1223222 235899999999888653210
Q ss_pred HHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhcccccccccccccccccccccccc
Q 004760 427 NLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQ 506 (732)
Q Consensus 427 ~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~ 506 (732)
...+.+.|+++|++.+.||++.+++|++.+.++.++
T Consensus 218 ------------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~-------------------------------- 253 (406)
T PRK15427 218 ------------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVA-------------------------------- 253 (406)
T ss_pred ------------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCC--------------------------------
Confidence 123456799999999999999999999999766554
Q ss_pred ccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCC
Q 004760 507 MSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN 586 (732)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~ 586 (732)
.++.++|+|+..+.++.++..
T Consensus 254 -----------------------------------------------------~~l~ivG~G~~~~~l~~~~~~------ 274 (406)
T PRK15427 254 -----------------------------------------------------FRYRILGIGPWERRLRTLIEQ------ 274 (406)
T ss_pred -----------------------------------------------------EEEEEEECchhHHHHHHHHHH------
Confidence 357888999877777666643
Q ss_pred ChhhHHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCC----CCCCCcHHHHHHHHcCCCEEEcCCCCh
Q 004760 587 KVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQG----LGETFGRVTIEAMAFGVPVLGTDAGGT 660 (732)
Q Consensus 587 ~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~----~~Egfg~vilEAMA~GlPVI~td~gG~ 660 (732)
+++.++|.|+|+. +++.++|+.||++|+||.. -.||+|++++||||||+|||+|+.||+
T Consensus 275 ---------------~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~ 339 (406)
T PRK15427 275 ---------------YQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGI 339 (406)
T ss_pred ---------------cCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCc
Confidence 3788999999976 7899999999999999961 039999999999999999999999999
Q ss_pred hhhhccCceEEEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 661 KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 661 ~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
+|+|+++.+|++++++|+ ++|+++|..+++ |++.+++|++++++.++++|+|+.+++++.++|+.
T Consensus 340 ~E~v~~~~~G~lv~~~d~--~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 340 PELVEADKSGWLVPENDA--QALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred hhhhcCCCceEEeCCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999999999999999988 999999999999 99999999999999999999999999999999976
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=4.2e-31 Score=289.23 Aligned_cols=343 Identities=18% Similarity=0.242 Sum_probs=246.0
Q ss_pred CeEEEEeC-CC-----CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc------------
Q 004760 243 RKFILIFH-EL-----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------ 304 (732)
Q Consensus 243 ~kIllI~h-~l-----s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~------------ 304 (732)
.||++++. -+ ..||+|.++.++|++|.. +|++++....|--..+....|+.++..+...
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRL 79 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhcc
Confidence 45555543 34 379999999999999943 9999998777522444556666665442211
Q ss_pred ------h----hhh---hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHH
Q 004760 305 ------S----FKT---SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSES 371 (732)
Q Consensus 305 ------~----~~~---~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~ 371 (732)
. +.. ..++|+|++|.... +...+.....+. +++.++|.. +.+ ..+.+...++++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~---~~~~~~~~~~~~-~~v~~~h~~---~~~---~~~~~~~~ii~~S~~ 149 (380)
T PRK15484 80 DPLPYSQRILNIAHKFTITKDSVIVIHNSMK---LYRQIRERAPQA-KLVMHMHNA---FEP---ELLDKNAKIIVPSQF 149 (380)
T ss_pred CchhHHHHHHHHHHhcCCCCCcEEEEeCcHH---hHHHHHhhCCCC-CEEEEEecc---cCh---hHhccCCEEEEcCHH
Confidence 0 111 35699999887332 222233333233 455555432 211 123456778999988
Q ss_pred hHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEec
Q 004760 372 QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS 451 (732)
Q Consensus 372 ~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGr 451 (732)
.... + ...... ..+.+||||+|...|.+... ..+++.++++.+..+|+++|+
T Consensus 150 ~~~~----~-----~~~~~~-----------~~i~vIpngvd~~~~~~~~~--------~~~~~~~~~~~~~~~il~~Gr 201 (380)
T PRK15484 150 LKKF----Y-----EERLPN-----------ADISIVPNGFCLETYQSNPQ--------PNLRQQLNISPDETVLLYAGR 201 (380)
T ss_pred HHHH----H-----HhhCCC-----------CCEEEecCCCCHHHcCCcch--------HHHHHHhCCCCCCeEEEEecc
Confidence 6442 2 111111 12489999999988876432 345778899888889999999
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCc
Q 004760 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (732)
Q Consensus 452 i~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P 531 (732)
+.+.||++.|++|+..+.++.|+
T Consensus 202 l~~~Kg~~~Li~A~~~l~~~~p~--------------------------------------------------------- 224 (380)
T PRK15484 202 ISPDKGILLLMQAFEKLATAHSN--------------------------------------------------------- 224 (380)
T ss_pred CccccCHHHHHHHHHHHHHhCCC---------------------------------------------------------
Confidence 99999999999999999877665
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEc
Q 004760 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT 611 (732)
Q Consensus 532 ~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~ 611 (732)
.+++++|+|+.... .....|.+++.+ +.+.+ ..++.|+
T Consensus 225 ----------------------------~~lvivG~g~~~~~-----------~~~~~~~~~l~~-~~~~l--~~~v~~~ 262 (380)
T PRK15484 225 ----------------------------LKLVVVGDPTASSK-----------GEKAAYQKKVLE-AAKRI--GDRCIML 262 (380)
T ss_pred ----------------------------eEEEEEeCCccccc-----------cchhHHHHHHHH-HHHhc--CCcEEEe
Confidence 25667777653210 011123333333 22332 3579999
Q ss_pred cch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEE-EECCCCCcHHHHHHHHH
Q 004760 612 PAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGL-LHPPGHPGAQVLAQNLR 688 (732)
Q Consensus 612 G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gl-l~~~~d~~~e~La~aL~ 688 (732)
|+. +++..+|++||++|+||.+ .|+||++++||||||+|||+|+.||+.|++.++.+|+ ++++.|+ ++|+++|.
T Consensus 263 G~~~~~~l~~~~~~aDv~v~pS~~-~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~--~~la~~I~ 339 (380)
T PRK15484 263 GGQPPEKMHNYYPLADLVVVPSQV-EEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTS--DSIISDIN 339 (380)
T ss_pred CCCCHHHHHHHHHhCCEEEeCCCC-ccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCH--HHHHHHHH
Confidence 975 6899999999999999973 6999999999999999999999999999999999998 5577777 99999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 689 YLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 689 ~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
.+++|++. .+|++++++.+.++|+|+.+++++.++|++..
T Consensus 340 ~ll~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 340 RTLADPEL-TQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHcCHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999985 78999999999999999999999999998753
No 19
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.3e-30 Score=281.01 Aligned_cols=343 Identities=21% Similarity=0.303 Sum_probs=245.0
Q ss_pred eEEEEeCCCC---CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--------------h
Q 004760 244 KFILIFHELS---MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--------------F 306 (732)
Q Consensus 244 kIllI~h~ls---~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--------------~ 306 (732)
||++|++... .||++..+.+||.+|.+. ++|.|++... + .....++++...+.... +
T Consensus 2 kI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02149 2 KVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGD-Q----RFDSEGLTVKGYRPWSELKEANKALGTFSVDL 75 (388)
T ss_pred eeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCC-c----hhcCCCeEEEEecChhhccchhhhhhhhhHHH
Confidence 6899988775 399999999999999887 7777777432 2 13356777764432221 0
Q ss_pred ---hhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh-------------HhHHH-hhhhhccccEEEEec
Q 004760 307 ---KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------------EYFDR-AKLVLDRVKLLVFLS 369 (732)
Q Consensus 307 ---~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~-------------~~~~~-~~~~l~r~~~li~vS 369 (732)
....++|+||+|+.... +...++....+.+ +++.+|.... .++.. .+..+..++.++++|
T Consensus 76 ~~~~~~~~~divh~~~~~~~--~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S 152 (388)
T TIGR02149 76 AMANDPVDADVVHSHTWYTF--LAGHLAKKLYDKP-LVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVS 152 (388)
T ss_pred HHhhCCCCCCeEeecchhhh--hHHHHHHHhcCCC-EEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEcc
Confidence 11347999999863322 2233444444555 5555654210 01111 123445588899999
Q ss_pred HHhHHHhhhHHHhhhhhc--cCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEE
Q 004760 370 ESQTKQWLTWCEEEKLKL--RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVL 447 (732)
Q Consensus 370 ~~~~~~~~~~~~~e~i~l--~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil 447 (732)
+..... . .+. +..+ ..+.+||||+|...+.+... ...+++++++.+.++|+
T Consensus 153 ~~~~~~----~----~~~~~~~~~-----------~~i~vi~ng~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~ 205 (388)
T TIGR02149 153 GGMRED----I----LKYYPDLDP-----------EKVHVIYNGIDTKEYKPDDG--------NVVLDRYGIDRSRPYIL 205 (388)
T ss_pred HHHHHH----H----HHHcCCCCc-----------ceEEEecCCCChhhcCCCch--------HHHHHHhCCCCCceEEE
Confidence 886432 1 111 1111 23589999999998876432 45688899988888999
Q ss_pred EEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhc
Q 004760 448 SLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQ 527 (732)
Q Consensus 448 ~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~ 527 (732)
++|++.+.||++.+++|++.+.. +
T Consensus 206 ~~Grl~~~Kg~~~li~a~~~l~~---~----------------------------------------------------- 229 (388)
T TIGR02149 206 FVGRITRQKGVPHLLDAVHYIPK---D----------------------------------------------------- 229 (388)
T ss_pred EEcccccccCHHHHHHHHHHHhh---c-----------------------------------------------------
Confidence 99999999999999999998731 1
Q ss_pred cCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCC-CC
Q 004760 528 LNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL-SK 606 (732)
Q Consensus 528 ~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l-~~ 606 (732)
.+++++|.|+....+. +++.+.+. .++. .+
T Consensus 230 --------------------------------~~l~i~g~g~~~~~~~----------------~~~~~~~~-~~~~~~~ 260 (388)
T TIGR02149 230 --------------------------------VQVVLCAGAPDTPEVA----------------EEVRQAVA-LLDRNRT 260 (388)
T ss_pred --------------------------------CcEEEEeCCCCcHHHH----------------HHHHHHHH-HhccccC
Confidence 1345556554332222 12222221 1133 24
Q ss_pred cEEEc-cc--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcH---
Q 004760 607 AMLWT-PA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGA--- 680 (732)
Q Consensus 607 ~V~f~-G~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~--- 680 (732)
+|.|. |. .+++..+|++||++|+||. .|+||++++|||+||+|||+|+.||..|+++++.+|++++++|.+.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~ 338 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGF 338 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccch
Confidence 57765 43 4789999999999999998 8999999999999999999999999999999999999998876422
Q ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 681 -QVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 681 -e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
++|+++|.++++|++.+++|++++++.+.++|+|+.+++++.++|++++
T Consensus 339 ~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 339 QAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999889999999999999999864
No 20
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=4.8e-31 Score=288.45 Aligned_cols=341 Identities=16% Similarity=0.204 Sum_probs=237.8
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch------------------
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS------------------ 305 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~------------------ 305 (732)
|||+|...+- -..-+||.+|.++||+|++++......... |++++.......
T Consensus 1 ~il~~~~~~p-----~~~~~la~~L~~~G~~v~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (396)
T cd03818 1 RILFVHQNFP-----GQFRHLAPALAAQGHEVVFLTEPNAAPPPG-----GVRVVRYRPPRGPTSGTHPYLREFEEAVLR 70 (396)
T ss_pred CEEEECCCCc-----hhHHHHHHHHHHCCCEEEEEecCCCCCCCC-----CeeEEEecCCCCCCCCCCccchhHHHHHHH
Confidence 4677766654 335689999999999999999766544322 788776553311
Q ss_pred ----------h-hhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEE--Eee--ch---------hHh--HHH-----
Q 004760 306 ----------F-KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWW--IME--NR---------REY--FDR----- 354 (732)
Q Consensus 306 ----------~-~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~--i~e--~r---------~~~--~~~----- 354 (732)
+ .+.++||+||+|+...... ++.....+.+.+.+. .+. .. ... ..+
T Consensus 71 ~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~---~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (396)
T cd03818 71 GQAVARALLALRAKGFRPDVIVAHPGWGETL---FLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRN 147 (396)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCccchhh---hHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhh
Confidence 1 1256899999997543221 122222222322211 110 00 000 011
Q ss_pred --hhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHH
Q 004760 355 --AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDS 432 (732)
Q Consensus 355 --~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~ 432 (732)
....+..++.+++.|+.+... + .... . ..+.+||||+|++.|.+..... ..
T Consensus 148 ~~~~~~~~~ad~vi~~s~~~~~~----~-----~~~~-~-----------~ki~vI~ngvd~~~f~~~~~~~------~~ 200 (396)
T cd03818 148 ALILLALAQADAGVSPTRWQRST----F-----PAEL-R-----------SRISVIHDGIDTDRLRPDPQAR------LR 200 (396)
T ss_pred hHhHHHHHhCCEEECCCHHHHhh----C-----cHhh-c-----------cceEEeCCCccccccCCCchhh------hc
Confidence 112355688899998887442 1 0000 0 1348999999999998754321 12
Q ss_pred HHHHhCCCCCCEEEEEEec-CCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccc
Q 004760 433 VRKEMGLTDQDMLVLSLSS-INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDV 511 (732)
Q Consensus 433 ~R~~lgl~~~~~lil~vGr-i~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~ 511 (732)
.+...++.+++++|+++|| +.+.||++.+++|+..+.++.|+
T Consensus 201 ~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~------------------------------------- 243 (396)
T cd03818 201 LPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPD------------------------------------- 243 (396)
T ss_pred ccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCC-------------------------------------
Confidence 3334446677889999997 99999999999999999877665
Q ss_pred cCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCC-Chhh
Q 004760 512 GLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN-KVPY 590 (732)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~-~~~y 590 (732)
.+++++|++.. .+|.... ...+
T Consensus 244 ------------------------------------------------~~lvivG~~~~---------~~g~~~~~~~~~ 266 (396)
T cd03818 244 ------------------------------------------------ARVVIVGGDGV---------SYGAPPPDGESW 266 (396)
T ss_pred ------------------------------------------------cEEEEEcCCCc---------ccCCCCCCcccH
Confidence 24556665320 0111111 1113
Q ss_pred HHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCc
Q 004760 591 VKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNV 668 (732)
Q Consensus 591 ~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~ 668 (732)
.+.+++.+...++ .++|+|+|++ +++..+|+.||++|+||. .|++|++++||||||+|||+|+.||..|++.++.
T Consensus 267 ~~~~~~~~~~~~~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~ 343 (396)
T cd03818 267 KQHMLDELGGRLD-LSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITDGE 343 (396)
T ss_pred HHHHHHHhhcccC-cceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhcccCC
Confidence 3344444433222 4789999986 689999999999999998 9999999999999999999999999999999999
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 669 TGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 669 ~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~e 723 (732)
+|++++++|+ ++|+++|..+++|++.+++|++++++.++++|+|+.++++|++
T Consensus 344 ~G~lv~~~d~--~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 344 NGLLVDFFDP--DALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred ceEEcCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHhC
Confidence 9999999988 9999999999999999999999999999999999999998863
No 21
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=1.6e-30 Score=270.47 Aligned_cols=340 Identities=20% Similarity=0.215 Sum_probs=237.5
Q ss_pred eEEEEeCCC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEE-----EE--cCC------Cch---
Q 004760 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKV-----LE--DRG------EPS--- 305 (732)
Q Consensus 244 kIllI~h~l--s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v-----~~--~~~------~~~--- 305 (732)
||++|++.+ ..||++.++.+||++|.+.||+|.+++....... .......++. .. ... ...
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDP-LLVALNGVPVKLFSINVAYGLNLARYLFPPSLLA 79 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCcc-chhhccCceeeecccchhhhhhhhhhccChhHHH
Confidence 689999999 7899999999999999999999999996544332 1111111100 00 000 000
Q ss_pred --hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhH-------------HHhhhhhccccEEEEecH
Q 004760 306 --FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYF-------------DRAKLVLDRVKLLVFLSE 370 (732)
Q Consensus 306 --~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~-------------~~~~~~l~r~~~li~vS~ 370 (732)
.....++|+|++++................+.+ +++++|.....+. ......+...+.+++.+.
T Consensus 80 ~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 80 WLRLNIREADIVHVHGLWSYPSLAAARAARKYGIP-YVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCC-EEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCH
Confidence 122568999999874322222211111122333 5555543211110 011222333566666665
Q ss_pred HhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEe
Q 004760 371 SQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLS 450 (732)
Q Consensus 371 ~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vG 450 (732)
..... ....... ..+.+||||+|.+.+.+.... .. |+.++.+.+.++|+++|
T Consensus 159 ~~~~~---------~~~~~~~-----------~~~~vi~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~G 210 (375)
T cd03821 159 QEAAE---------IRRLGLK-----------APIAVIPNGVDIPPFAALPSR-------GR-RRKFPILPDKRIILFLG 210 (375)
T ss_pred HHHHH---------HHhhCCc-----------ccEEEcCCCcChhccCcchhh-------hh-hhhccCCCCCcEEEEEe
Confidence 43221 1111111 234899999999988765431 12 77788888899999999
Q ss_pred cCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCC
Q 004760 451 SINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (732)
Q Consensus 451 ri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (732)
++.+.||++.+++|+..+.+++++
T Consensus 211 ~~~~~K~~~~li~a~~~l~~~~~~-------------------------------------------------------- 234 (375)
T cd03821 211 RLHPKKGLDLLIEAFAKLAERFPD-------------------------------------------------------- 234 (375)
T ss_pred CcchhcCHHHHHHHHHHhhhhcCC--------------------------------------------------------
Confidence 999999999999999999876554
Q ss_pred cccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEE
Q 004760 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW 610 (732)
Q Consensus 531 P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f 610 (732)
.+++++|.++... ...++.+.+.+++.++|.|
T Consensus 235 -----------------------------~~l~i~G~~~~~~-------------------~~~~~~~~~~~~~~~~v~~ 266 (375)
T cd03821 235 -----------------------------WHLVIAGPDEGGY-------------------RAELKQIAAALGLEDRVTF 266 (375)
T ss_pred -----------------------------eEEEEECCCCcch-------------------HHHHHHHHHhcCccceEEE
Confidence 2456666653211 1112222344588899999
Q ss_pred ccchh--hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHH
Q 004760 611 TPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (732)
Q Consensus 611 ~G~~~--dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~ 688 (732)
+|+++ ++..+|+.||++|+||. .|+||++++|||+||+|||+++.+|..|++.+ .+|++++.++ ++++++|.
T Consensus 267 ~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~i~ 340 (375)
T cd03821 267 TGMLYGEDKAAALADADLFVLPSH--SENFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVDDDV---DALAAALR 340 (375)
T ss_pred cCCCChHHHHHHHhhCCEEEeccc--cCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeCCCh---HHHHHHHH
Confidence 99885 89999999999999998 89999999999999999999999999999998 7898887543 89999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 689 YLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 689 ~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~e 723 (732)
.++++++.+++|++++++.+.++|+|+.+++++++
T Consensus 341 ~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 375 (375)
T cd03821 341 RALELPQRLKAMGENGRALVEERFSWTAIAQQLLE 375 (375)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhhC
Confidence 99999999999999999998889999999998863
No 22
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.7e-30 Score=310.63 Aligned_cols=357 Identities=12% Similarity=0.102 Sum_probs=253.6
Q ss_pred CCeEEEEeCCCC----CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh---hHH------------------HhCCcE
Q 004760 242 SRKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLM---PEL------------------ARRKIK 296 (732)
Q Consensus 242 ~~kIllI~h~ls----~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~---~el------------------~~~gI~ 296 (732)
+.+|++|+-|.. .||-.-++..|+++|++.||+|.|+++....-.. ..+ ...|++
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV~ 666 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGLS 666 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCcE
Confidence 579999998885 6899999999999999999999999964332100 001 113566
Q ss_pred EEEcCCCc------------h--------------hh--hhcCccEEEeCCchhhHHHHHHHHhhc----CCCccEEEEE
Q 004760 297 VLEDRGEP------------S--------------FK--TSMKADLVIAGSAVCATWIDQYITRFP----AGGSQVVWWI 344 (732)
Q Consensus 297 v~~~~~~~------------~--------------~~--~~~k~DlVia~Sav~~~~i~~~i~~~~----~~~~~ivw~i 344 (732)
++...... . +. ...+|||||+|.... .++..++.... ....+++..+
T Consensus 667 vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~t-alva~llk~~~~~~~~~~~p~V~Ti 745 (1036)
T PLN02316 667 VYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSS-APVAWLFKDHYAHYGLSKARVVFTI 745 (1036)
T ss_pred EEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChH-HHHHHHHHHhhhhhccCCCCEEEEe
Confidence 55433211 0 11 135899999996432 33333333211 1224577778
Q ss_pred eechhHhHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhcc-CCCccccccCCCccceEEeecCCCCCCCCCchhh-
Q 004760 345 MENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLR-SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM- 422 (732)
Q Consensus 345 ~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~-~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~- 422 (732)
|... ......+..+...+.++++|+..... +. ... ..+ . ...+.+|+||+|+..|.|...
T Consensus 746 Hnl~-~~~n~lk~~l~~AD~ViTVS~tya~E---I~-----~~~~l~~-------~--~~Kl~vI~NGID~~~w~P~tD~ 807 (1036)
T PLN02316 746 HNLE-FGANHIGKAMAYADKATTVSPTYSRE---VS-----GNSAIAP-------H--LYKFHGILNGIDPDIWDPYNDN 807 (1036)
T ss_pred CCcc-cchhHHHHHHHHCCEEEeCCHHHHHH---HH-----hccCccc-------c--cCCEEEEECCccccccCCcccc
Confidence 7431 11112334556789999999986332 11 111 111 0 124589999999988766421
Q ss_pred -----------HHHhHHhHHHHHHHhCCCC-CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhcccccccc
Q 004760 423 -----------REKRNLLRDSVRKEMGLTD-QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKK 490 (732)
Q Consensus 423 -----------~ekr~~~r~~~R~~lgl~~-~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~ 490 (732)
.+.++..+..+|+++|++. +.++|++|||+.++||+++|++|+..+.+. +
T Consensus 808 ~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~--~---------------- 869 (1036)
T PLN02316 808 FIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLER--N---------------- 869 (1036)
T ss_pred cccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhc--C----------------
Confidence 0111223467899999984 678999999999999999999999988542 1
Q ss_pred ccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchh
Q 004760 491 SSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ 570 (732)
Q Consensus 491 ~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~ 570 (732)
.+++++|.|++
T Consensus 870 ---------------------------------------------------------------------~qlVIvG~Gpd 880 (1036)
T PLN02316 870 ---------------------------------------------------------------------GQVVLLGSAPD 880 (1036)
T ss_pred ---------------------------------------------------------------------cEEEEEeCCCC
Confidence 25778888864
Q ss_pred h---hhHhhhhhccCCCCCChhhHHHHHHHHHhcCC--CCCcEEEccchhhH--HHHHHHcCEEEEccCCCCCCCcHHHH
Q 004760 571 Q---QALKILIGSVGSKSNKVPYVKEILEFLSQHSN--LSKAMLWTPATTRV--ASLYSAADVYVINSQGLGETFGRVTI 643 (732)
Q Consensus 571 ~---~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~--l~~~V~f~G~~~dv--~~lysaADv~V~pS~~~~Egfg~vil 643 (732)
. +.++.++ +.++ .+++|.|.+..++. ..+|++||+||+||+ +|+||++++
T Consensus 881 ~~~e~~l~~La---------------------~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqL 937 (1036)
T PLN02316 881 PRIQNDFVNLA---------------------NQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQL 937 (1036)
T ss_pred HHHHHHHHHHH---------------------HHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHH
Confidence 2 2223232 3333 35789988766553 379999999999998 999999999
Q ss_pred HHHHcCCCEEEcCCCChhhhhccC-------------ceEEEECCCCCcHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Q 004760 644 EAMAFGVPVLGTDAGGTKEIVEHN-------------VTGLLHPPGHPGAQVLAQNLRYLLKN-PSVRERMAMEGRKKVE 709 (732)
Q Consensus 644 EAMA~GlPVI~td~gG~~EiVe~g-------------~~Gll~~~~d~~~e~La~aL~~LL~n-~~~r~~m~~~~r~~v~ 709 (732)
|||+||+|+|++++||++|+|.++ .+|+++++.|+ ++|+.+|.+++.+ ++.+..++..+++.+.
T Consensus 938 EAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~--~aLa~AL~raL~~~~~~~~~~~~~~r~~m~ 1015 (1036)
T PLN02316 938 TAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADA--AGVDYALNRAISAWYDGRDWFNSLCKRVME 1015 (1036)
T ss_pred HHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999873 68999999988 9999999999986 4566778888888888
Q ss_pred HhcCHHHHHHHHHHHHHHhh
Q 004760 710 RMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 710 ~~ys~~~~~~~~~ev~~~~l 729 (732)
+.|||+.++++|+++|+.+.
T Consensus 1016 ~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 1016 QDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred hhCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999875
No 23
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=2.3e-30 Score=277.67 Aligned_cols=348 Identities=20% Similarity=0.262 Sum_probs=246.1
Q ss_pred CeEEEEeCCC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChh-HHHhCCcEEEEcCCCch--------------
Q 004760 243 RKFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP-ELARRKIKVLEDRGEPS-------------- 305 (732)
Q Consensus 243 ~kIllI~h~l--s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~-el~~~gI~v~~~~~~~~-------------- 305 (732)
..+++..+.. ..||++.++.+||++|.+.||+|.|++....++... .....++.++.......
T Consensus 7 ~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
T cd03800 7 LHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDE 86 (398)
T ss_pred ccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHH
Confidence 3344444433 379999999999999999999999999654433221 22345777765443110
Q ss_pred -------hhhhc--CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh----Hh-----------HHHhhhhhcc
Q 004760 306 -------FKTSM--KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR----EY-----------FDRAKLVLDR 361 (732)
Q Consensus 306 -------~~~~~--k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~----~~-----------~~~~~~~l~r 361 (732)
..... +||+||++....+ +....++ ...+.+ ++++.|.... .. .......+..
T Consensus 87 ~~~~~~~~~~~~~~~~Div~~~~~~~~-~~~~~~~-~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (398)
T cd03800 87 FADDLLRFLRREGGRPDLIHAHYWDSG-LVALLLA-RRLGIP-LVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRA 163 (398)
T ss_pred HHHHHHHHHHhcCCCccEEEEecCccc-hHHHHHH-hhcCCc-eEEEeecccccCCcccccccccchhhhhhHHHHHHhh
Confidence 11133 9999999864332 2222222 223333 4444443110 00 0111233445
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCC
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~ 441 (732)
++.+++.|+..... . ......+ ...+.+||||+|...|.+.... ...+++++.+.
T Consensus 164 ad~ii~~s~~~~~~----~----~~~~~~~----------~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~ 218 (398)
T cd03800 164 ADRVIASTPQEAEE----L----YSLYGAY----------PRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDP 218 (398)
T ss_pred CCEEEEcCHHHHHH----H----HHHcccc----------ccccEEECCCCCccceecccch-------hhHHHhhccCC
Confidence 88899998876332 1 1111111 1124899999999888665432 12256677778
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccc
Q 004760 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (732)
Q Consensus 442 ~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~ 521 (732)
++++|+++|++.+.||++.+++|+..+.++.++
T Consensus 219 ~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~----------------------------------------------- 251 (398)
T cd03800 219 DKPRILAVGRLDPRKGIDTLIRAYAELPELRER----------------------------------------------- 251 (398)
T ss_pred CCcEEEEEcccccccCHHHHHHHHHHHHHhCCC-----------------------------------------------
Confidence 889999999999999999999999999776554
Q ss_pred hhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhc
Q 004760 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601 (732)
Q Consensus 522 ~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~ 601 (732)
.+++++|+|..... +.....++.+.+.
T Consensus 252 --------------------------------------~~l~i~G~~~~~~~---------------~~~~~~~~~~~~~ 278 (398)
T cd03800 252 --------------------------------------ANLVIVGGPRDDIL---------------AMDEEELRELARE 278 (398)
T ss_pred --------------------------------------eEEEEEECCCCcch---------------hhhhHHHHHHHHh
Confidence 24566666543110 1111123344455
Q ss_pred CCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCc
Q 004760 602 SNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 602 l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~ 679 (732)
+++.++|.|+|++ +++..+|+.||++++||. .|+||++++||||||+|||+++.+|..|+++++.+|++++++|+
T Consensus 279 ~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~- 355 (398)
T cd03800 279 LGVIDRVDFPGRVSREDLPALYRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDP- 355 (398)
T ss_pred cCCCceEEEeccCCHHHHHHHHHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCH-
Confidence 5888899999986 689999999999999997 99999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLS 722 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ 722 (732)
++++++|..++++++.+++|+.++++.++++|+|+.++++|.
T Consensus 356 -~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 356 -EALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred -HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 999999999999999999999999999988999999999986
No 24
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=2.7e-30 Score=265.26 Aligned_cols=324 Identities=26% Similarity=0.373 Sum_probs=238.9
Q ss_pred eEEEEeCCCC-CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc------------h---hh
Q 004760 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------S---FK 307 (732)
Q Consensus 244 kIllI~h~ls-~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~------------~---~~ 307 (732)
||+++++.+. .||+++.+.+|+++|.+.||+|.+++.......... ...++.+....... . +.
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE-LDPKIKVIDLGDKRDSKLLARFKKLRRLRKLL 79 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc-cCCccceeecccccccchhccccchHHHHHhh
Confidence 6899999999 999999999999999999999999996655411111 12344444433211 0 33
Q ss_pred hhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHH------hhhhhccccEEEEecHHhHHHhhhHHH
Q 004760 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDR------AKLVLDRVKLLVFLSESQTKQWLTWCE 381 (732)
Q Consensus 308 ~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~------~~~~l~r~~~li~vS~~~~~~~~~~~~ 381 (732)
+..+||+||++... ...++.....+..+++.+.|......... .+..+..++.+++.|+.... .
T Consensus 80 ~~~~~d~i~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~- 149 (348)
T cd03820 80 KNNKPDVVISFLTS----LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRA-----L- 149 (348)
T ss_pred cccCCCEEEEcCch----HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHH-----H-
Confidence 36799999998754 11222222233324555555432221111 23345568889999988621 1
Q ss_pred hhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHH
Q 004760 382 EEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (732)
Q Consensus 382 ~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~L 461 (732)
.... + ...+.++||+++.+.+.+. .+.+...++++|++.+.||++.+
T Consensus 150 ----~~~~-~----------~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l 196 (348)
T cd03820 150 ----YYKK-F----------NKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLL 196 (348)
T ss_pred ----hhcc-C----------CCCeEEecCCcChhhcccc------------------CCCCCcEEEEEEeeccccCHHHH
Confidence 1111 1 1235899999998876543 12456789999999999999999
Q ss_pred HHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCc
Q 004760 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (732)
Q Consensus 462 LeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~l 541 (732)
++|++.+.+..++
T Consensus 197 ~~~~~~l~~~~~~------------------------------------------------------------------- 209 (348)
T cd03820 197 IEAWAKIAKKHPD------------------------------------------------------------------- 209 (348)
T ss_pred HHHHHHHHhcCCC-------------------------------------------------------------------
Confidence 9999999765544
Q ss_pred ccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHH
Q 004760 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLY 621 (732)
Q Consensus 542 f~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~ly 621 (732)
.+++++|.|+....++.++ +.+++..+|.|.|..+++..+|
T Consensus 210 ------------------~~l~i~G~~~~~~~~~~~~---------------------~~~~~~~~v~~~g~~~~~~~~~ 250 (348)
T cd03820 210 ------------------WKLRIVGDGPEREALEALI---------------------KELGLEDRVILLGFTKNIEEYY 250 (348)
T ss_pred ------------------eEEEEEeCCCCHHHHHHHH---------------------HHcCCCCeEEEcCCcchHHHHH
Confidence 2567778776655554443 2337788999999999999999
Q ss_pred HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHH
Q 004760 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERM 700 (732)
Q Consensus 622 saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m 700 (732)
+.||++++||. .|+||++++|||+||+|||+++. ++..+++.++.+|+++++.|. ++++++|.++++|++.+++|
T Consensus 251 ~~ad~~i~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~i~~ll~~~~~~~~~ 326 (348)
T cd03820 251 AKASIFVLTSR--FEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDV--EALAEALLRLMEDEELRKRM 326 (348)
T ss_pred HhCCEEEeCcc--ccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCH--HHHHHHHHHHHcCHHHHHHH
Confidence 99999999998 89999999999999999999997 456777887779999998887 99999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHH
Q 004760 701 AMEGRKKVERMYLKKHMYKKLS 722 (732)
Q Consensus 701 ~~~~r~~v~~~ys~~~~~~~~~ 722 (732)
++++++.+ +.|+|+.++++|.
T Consensus 327 ~~~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 327 GANARESA-ERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHHH-HHhCHHHHHHHhc
Confidence 99997665 5699999999885
No 25
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=5.6e-30 Score=270.53 Aligned_cols=323 Identities=23% Similarity=0.289 Sum_probs=236.2
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchhh
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCA 323 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~~ 323 (732)
||+++++..+.||+++.+.+++.+|.+.||+|.+++.... .........+||+||+|.....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~------------------~~~~~~~~~~~diih~~~~~~~ 63 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK------------------ALISKIEIINADIVHLHWIHGG 63 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc------------------hhhhChhcccCCEEEEEccccC
Confidence 7999999999999999999999999999999999995433 1111234678999988764333
Q ss_pred HHHHHHHHhhcCCCccEEEEEeech----------------------------------hHhHHHhhhhh-ccccEEEEe
Q 004760 324 TWIDQYITRFPAGGSQVVWWIMENR----------------------------------REYFDRAKLVL-DRVKLLVFL 368 (732)
Q Consensus 324 ~~i~~~i~~~~~~~~~ivw~i~e~r----------------------------------~~~~~~~~~~l-~r~~~li~v 368 (732)
.+....+.....+. ++++.+|... ...+......+ .....+++.
T Consensus 64 ~~~~~~~~~~~~~~-~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 142 (365)
T cd03825 64 FLSIEDLSKLLDRK-PVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVAP 142 (365)
T ss_pred ccCHHHHHHHHcCC-CEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEeh
Confidence 22222222222233 3566555210 00011111111 123456666
Q ss_pred cHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEE
Q 004760 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLS 448 (732)
Q Consensus 369 S~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~ 448 (732)
|+..... ..... ++. ...+.++|||+|...|.+... ...++.+++++++.++++
T Consensus 143 s~~~~~~---------~~~~~-----~~~----~~~~~vi~ngi~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~ 196 (365)
T cd03825 143 SRWLADC---------ARSSS-----LFK----GIPIEVIPNGIDTTIFRPRDK--------REARKRLGLPADKKIILF 196 (365)
T ss_pred hHHHHHH---------HHhcc-----ccC----CCceEEeCCCCcccccCCCcH--------HHHHHHhCCCCCCeEEEE
Confidence 6654332 11111 001 123589999999998865433 456778899888888877
Q ss_pred EecCCC--CCCHHHHHHHHHHhHHh-CCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhh
Q 004760 449 LSSINP--GKGQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESF 525 (732)
Q Consensus 449 vGri~~--~KG~d~LLeA~~~l~~~-~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~ 525 (732)
.|+... .||++.+++|+..+.++ .++
T Consensus 197 ~~~~~~~~~K~~~~ll~a~~~l~~~~~~~--------------------------------------------------- 225 (365)
T cd03825 197 GAVGGTDPRKGFDELIEALKRLAERWKDD--------------------------------------------------- 225 (365)
T ss_pred EecCCCccccCHHHHHHHHHHhhhccCCC---------------------------------------------------
Confidence 777665 89999999999988654 222
Q ss_pred hccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCC
Q 004760 526 TQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS 605 (732)
Q Consensus 526 ~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~ 605 (732)
.+++++|+++..... ++.
T Consensus 226 ----------------------------------~~~~i~G~~~~~~~~----------------------------~~~ 243 (365)
T cd03825 226 ----------------------------------IELVVFGASDPEIPP----------------------------DLP 243 (365)
T ss_pred ----------------------------------eEEEEeCCCchhhhc----------------------------cCC
Confidence 246667776532210 344
Q ss_pred CcEEEccchh---hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHH
Q 004760 606 KAMLWTPATT---RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQV 682 (732)
Q Consensus 606 ~~V~f~G~~~---dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~ 682 (732)
.+|.|+|+.+ ++..+|+.||++++||. .|+||++++|||+||+|||+++.+|..|++.++.+|++++..|. ++
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~--~~ 319 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDP--ED 319 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCH--HH
Confidence 6799999864 68999999999999998 99999999999999999999999999999999889999998887 99
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 683 LAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 683 La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
+++++.+++++++.+.+|++++++.+.+.|+|+.++++|.++|+++
T Consensus 320 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 320 LAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998999999999999999863
No 26
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.98 E-value=3.4e-30 Score=289.59 Aligned_cols=359 Identities=16% Similarity=0.186 Sum_probs=245.2
Q ss_pred eEEEEeCCC----CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhH---------H----------HhCCcEEEEc
Q 004760 244 KFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---------L----------ARRKIKVLED 300 (732)
Q Consensus 244 kIllI~h~l----s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~e---------l----------~~~gI~v~~~ 300 (732)
||++|+.|. ..||...++.+|+++|++.||+|.|++..- +..... + ...|++++..
T Consensus 2 ~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 2 KILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGY-PAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred eEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCC-cchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 799999885 378999999999999999999999999543 222211 1 2357777643
Q ss_pred CCCc-------------h-----h-------hh--hcCccEEEeCCchhhHHHHHHHHhhc-C--CCccEEEEEeechh-
Q 004760 301 RGEP-------------S-----F-------KT--SMKADLVIAGSAVCATWIDQYITRFP-A--GGSQVVWWIMENRR- 349 (732)
Q Consensus 301 ~~~~-------------~-----~-------~~--~~k~DlVia~Sav~~~~i~~~i~~~~-~--~~~~ivw~i~e~r~- 349 (732)
.... . | .. ..+||+||+|...+ ..+..++.+.. . ...+++..+|....
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~-~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~ 159 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHT-GLIPALLKEKYWRGYPDIKTVFTIHNLAYQ 159 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHH-HHHHHHHHHhhhccCCCCCEEEEcCCCcCC
Confidence 2110 0 1 11 24999999996433 33333443221 1 12446777764311
Q ss_pred -H--------------hH--H---------HhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccc
Q 004760 350 -E--------------YF--D---------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELA 403 (732)
Q Consensus 350 -~--------------~~--~---------~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~ 403 (732)
. ++ + ..+..+...+.++++|+...+. ........+... ......+
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~e----i~~~~~~~gl~~-~~~~~~~---- 230 (466)
T PRK00654 160 GLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYARE----ITTPEFGYGLEG-LLRARSG---- 230 (466)
T ss_pred CcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHH----hccccCCcChHH-HHHhccc----
Confidence 0 00 0 0112244578899999886432 100000000000 0000012
Q ss_pred eEEeecCCCCCCCCCchhhH-----------HHhHHhHHHHHHHhCCCC-CCEEEEEEecCCCCCCHHHHHHHHHHhHHh
Q 004760 404 FVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD-QDMLVLSLSSINPGKGQLLLVESAQLMIEQ 471 (732)
Q Consensus 404 ~v~vIpngvd~~~f~~~~~~-----------ekr~~~r~~~R~~lgl~~-~~~lil~vGri~~~KG~d~LLeA~~~l~~~ 471 (732)
.+.+||||+|+..|.|.... +.....+..+|+++|+++ +.++|+++||+.++||++.+++|+..+.++
T Consensus 231 ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~ 310 (466)
T PRK00654 231 KLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ 310 (466)
T ss_pred CceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc
Confidence 35899999999988764210 011123467899999985 678999999999999999999999988643
Q ss_pred CCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCcc
Q 004760 472 EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAV 551 (732)
Q Consensus 472 ~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v 551 (732)
+
T Consensus 311 --~----------------------------------------------------------------------------- 311 (466)
T PRK00654 311 --G----------------------------------------------------------------------------- 311 (466)
T ss_pred --C-----------------------------------------------------------------------------
Confidence 2
Q ss_pred ccCCcccceeEEeccCchh--hhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEE-Eccchhh-HHHHHHHcCEE
Q 004760 552 SFGSGHLRRKVLSKSDGKQ--QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATTR-VASLYSAADVY 627 (732)
Q Consensus 552 ~iG~~~~~~~LlivG~G~~--~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~-f~G~~~d-v~~lysaADv~ 627 (732)
.+++++|+|+. .+.++.+ .+.++ .++. +.|+.++ +..+|++||++
T Consensus 312 --------~~lvivG~g~~~~~~~l~~l---------------------~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~ 360 (466)
T PRK00654 312 --------GQLVLLGTGDPELEEAFRAL---------------------AARYP--GKVGVQIGYDEALAHRIYAGADMF 360 (466)
T ss_pred --------CEEEEEecCcHHHHHHHHHH---------------------HHHCC--CcEEEEEeCCHHHHHHHHhhCCEE
Confidence 24677787742 1222222 23333 3454 5677644 67899999999
Q ss_pred EEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccC------ceEEEECCCCCcHHHHHHHHHHHhc---CHHHHH
Q 004760 628 VINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN------VTGLLHPPGHPGAQVLAQNLRYLLK---NPSVRE 698 (732)
Q Consensus 628 V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g------~~Gll~~~~d~~~e~La~aL~~LL~---n~~~r~ 698 (732)
|+||. .|+||++++|||+||+|+|++++||+.|+|.++ .+|++++++|+ ++|+++|.++++ +++.+.
T Consensus 361 v~PS~--~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~--~~la~~i~~~l~~~~~~~~~~ 436 (466)
T PRK00654 361 LMPSR--FEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNA--EDLLRALRRALELYRQPPLWR 436 (466)
T ss_pred EeCCC--CCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCH--HHHHHHHHHHHHHhcCHHHHH
Confidence 99998 999999999999999999999999999999887 89999999988 999999998876 777788
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 699 RMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 699 ~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
+|+.++.+ +.|+|++++++|.++|++++.
T Consensus 437 ~~~~~~~~---~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 437 ALQRQAMA---QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHhc---cCCChHHHHHHHHHHHHHHhh
Confidence 88887753 579999999999999998864
No 27
>PRK14099 glycogen synthase; Provisional
Probab=99.98 E-value=4.1e-30 Score=291.07 Aligned_cols=363 Identities=16% Similarity=0.185 Sum_probs=248.8
Q ss_pred ccCCeEEEEeCCCC----CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH----------------------HhC
Q 004760 240 VWSRKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL----------------------ARR 293 (732)
Q Consensus 240 ~~~~kIllI~h~ls----~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el----------------------~~~ 293 (732)
|.+.||++|+.|.. .||-.=++-.|.++|++.||+|.|+.+.- +.+.... ...
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY-PAVLAGIEDAEQVHSFPDLFGGPARLLAARAG 79 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC-cchhhhhcCceEEEEEeeeCCceEEEEEEEeC
Confidence 56789999999984 68999999999999999999999998532 2221110 012
Q ss_pred CcEEEEcC--------C------------Cch-----hh-----------hhcCccEEEeCCchhhHHHHHHHHhhcCCC
Q 004760 294 KIKVLEDR--------G------------EPS-----FK-----------TSMKADLVIAGSAVCATWIDQYITRFPAGG 337 (732)
Q Consensus 294 gI~v~~~~--------~------------~~~-----~~-----------~~~k~DlVia~Sav~~~~i~~~i~~~~~~~ 337 (732)
||+++... . +.. |. ...+|||||+|...++ ++..++.......
T Consensus 80 ~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~-l~~~~l~~~~~~~ 158 (485)
T PRK14099 80 GLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAG-LAPAYLHYSGRPA 158 (485)
T ss_pred CceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHH-HHHHHHHhCCCCC
Confidence 44443211 0 010 11 1359999999974332 3333443211122
Q ss_pred ccEEEEEeechh----------------HhH-----------HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCC
Q 004760 338 SQVVWWIMENRR----------------EYF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQ 390 (732)
Q Consensus 338 ~~ivw~i~e~r~----------------~~~-----------~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~ 390 (732)
.+.+..||.... .++ ...+..+.+.+.++++|+..+.. +...+ ...+..
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~e---i~~~~-~g~gl~ 234 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALE---IQGPE-AGMGLD 234 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHH---Hhccc-CCcChH
Confidence 346777774210 000 00223345688899999986432 11000 000000
Q ss_pred CccccccCCCccceEEeecCCCCCCCCCchhhH-----------HHhHHhHHHHHHHhCCCC--CCEEEEEEecCCCCCC
Q 004760 391 PAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKG 457 (732)
Q Consensus 391 ~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~-----------ekr~~~r~~~R~~lgl~~--~~~lil~vGri~~~KG 457 (732)
. +.... ...+.+|+||+|+..|.|.... +.+...+..+|+++|++. +.++|+++||+.++||
T Consensus 235 ~-~l~~~----~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG 309 (485)
T PRK14099 235 G-LLRQR----ADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKG 309 (485)
T ss_pred H-HHHhh----CCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCcccc
Confidence 0 00000 1235899999999988775321 111224567899999975 4678899999999999
Q ss_pred HHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCC
Q 004760 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (732)
Q Consensus 458 ~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~ 537 (732)
++.+++|+..+.++ +
T Consensus 310 ~d~Li~A~~~l~~~--~--------------------------------------------------------------- 324 (485)
T PRK14099 310 LDLLLEALPTLLGE--G--------------------------------------------------------------- 324 (485)
T ss_pred HHHHHHHHHHHHhc--C---------------------------------------------------------------
Confidence 99999999988542 1
Q ss_pred CCCcccccCCCCccccCCcccceeEEeccCchh--hhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcE-EEccch
Q 004760 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ--QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAM-LWTPAT 614 (732)
Q Consensus 538 ~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~--~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V-~f~G~~ 614 (732)
.+++++|.|+. ++.++.++ +.++ +++ .|+|+.
T Consensus 325 ----------------------~~lvivG~G~~~~~~~l~~l~---------------------~~~~--~~v~~~~G~~ 359 (485)
T PRK14099 325 ----------------------AQLALLGSGDAELEARFRAAA---------------------QAYP--GQIGVVIGYD 359 (485)
T ss_pred ----------------------cEEEEEecCCHHHHHHHHHHH---------------------HHCC--CCEEEEeCCC
Confidence 24777888752 22233222 2222 344 799998
Q ss_pred hhHHHHH-HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccC---------ceEEEECCCCCcHHHHH
Q 004760 615 TRVASLY-SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN---------VTGLLHPPGHPGAQVLA 684 (732)
Q Consensus 615 ~dv~~ly-saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g---------~~Gll~~~~d~~~e~La 684 (732)
++++.+| ++||+||+||. .|+||++++|||+||+|+|++++||+.|+|.++ .+|+++++.|+ ++|+
T Consensus 360 ~~l~~~~~a~aDifv~PS~--~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~--~~La 435 (485)
T PRK14099 360 EALAHLIQAGADALLVPSR--FEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTA--DALA 435 (485)
T ss_pred HHHHHHHHhcCCEEEECCc--cCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCH--HHHH
Confidence 8999987 56999999998 999999999999999999999999999999765 68999999988 9999
Q ss_pred HHHHH---HhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 685 QNLRY---LLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 685 ~aL~~---LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
++|.+ +++|++.+++|+++++. +.|||++++++|+++|++++.
T Consensus 436 ~ai~~a~~l~~d~~~~~~l~~~~~~---~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 436 AALRKTAALFADPVAWRRLQRNGMT---TDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhh---hcCChHHHHHHHHHHHHHHHh
Confidence 99987 77899999999999863 579999999999999999875
No 28
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.98 E-value=2e-30 Score=280.39 Aligned_cols=334 Identities=12% Similarity=0.162 Sum_probs=230.2
Q ss_pred CeEEEEeCCC-CCCcHHHHHHHHHHHHHHC--CCEEEEEEeCCCCCChhHHHhCCc----EEEEcC---CCc------hh
Q 004760 243 RKFILIFHEL-SMTGAPLSMMELATELLSC--GATVSAVVLSKRGGLMPELARRKI----KVLEDR---GEP------SF 306 (732)
Q Consensus 243 ~kIllI~h~l-s~gGA~~~~~eLA~~L~~~--G~~V~vv~l~~~g~l~~el~~~gI----~v~~~~---~~~------~~ 306 (732)
.||+++++.+ +.||+|.++.++|++|.+. |++|.+++..... ....+...++ +..... ... .+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKM-DKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCC-ChHHHHhcchhcccccchhhhhcccHHHHHHHHH
Confidence 3799998877 4699999999999999999 8888888854332 2222332221 111111 111 13
Q ss_pred hhhcCccEEEeCCchhhHHHHHHHHhhcCCC-ccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhh
Q 004760 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGG-SQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKL 385 (732)
Q Consensus 307 ~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~-~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i 385 (732)
.++.+||+||+++..+. +.. .++....+. ..+++|.|.............+...+.++++|+..... . .
T Consensus 80 l~~~~~Dii~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~----~----~ 149 (359)
T PRK09922 80 LKETQPDIVICIDVISC-LYA-NKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQ----M----M 149 (359)
T ss_pred HHhcCCCEEEEcCHHHH-HHH-HHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHH----H----H
Confidence 34789999999975543 222 222222233 23444554221111111111235578889999886432 2 2
Q ss_pred hccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCC--CCCCHHHHHH
Q 004760 386 KLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN--PGKGQLLLVE 463 (732)
Q Consensus 386 ~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~--~~KG~d~LLe 463 (732)
+.+..+ ..+.+||||+|.+.+...... .++++.++++||+. +.||++.+++
T Consensus 150 ~~~~~~-----------~ki~vi~N~id~~~~~~~~~~----------------~~~~~~i~~~Grl~~~~~k~~~~l~~ 202 (359)
T PRK09922 150 ARGISA-----------QRISVIYNPVEIKTIIIPPPE----------------RDKPAVFLYVGRLKFEGQKNVKELFD 202 (359)
T ss_pred HcCCCH-----------HHEEEEcCCCCHHHccCCCcc----------------cCCCcEEEEEEEEecccCcCHHHHHH
Confidence 223222 235899999997654321110 13457899999986 5699999999
Q ss_pred HHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCccc
Q 004760 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (732)
Q Consensus 464 A~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~ 543 (732)
|+..+.. +
T Consensus 203 a~~~~~~---~--------------------------------------------------------------------- 210 (359)
T PRK09922 203 GLSQTTG---E--------------------------------------------------------------------- 210 (359)
T ss_pred HHHhhCC---C---------------------------------------------------------------------
Confidence 9986621 1
Q ss_pred ccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch----hhHHH
Q 004760 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT----TRVAS 619 (732)
Q Consensus 544 ~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~----~dv~~ 619 (732)
.+++++|+|++.+.++.++ +.++++++|.|+|++ +++.+
T Consensus 211 ----------------~~l~ivG~g~~~~~l~~~~---------------------~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 211 ----------------WQLHIIGDGSDFEKCKAYS---------------------RELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred ----------------eEEEEEeCCccHHHHHHHH---------------------HHcCCCCeEEEecccCCcHHHHHH
Confidence 3578889998766665555 334888899999976 45778
Q ss_pred HHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC-CCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHH
Q 004760 620 LYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD-AGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRE 698 (732)
Q Consensus 620 lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td-~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~ 698 (732)
+|+.||++|+||. .|+||++++||||||+|||+|+ .||..|+|.++.+|++++++|+ ++|+++|..+++|++.+.
T Consensus 254 ~~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~--~~la~~i~~l~~~~~~~~ 329 (359)
T PRK09922 254 KIKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNI--DEFVGKLNKVISGEVKYQ 329 (359)
T ss_pred HHhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCH--HHHHHHHHHHHhCcccCC
Confidence 8889999999998 8999999999999999999999 8999999999999999999988 999999999999998542
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 699 RMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 699 ~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
..+......+|+.+++++++.++|...+.
T Consensus 330 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 330 ---HDAIPNSIERFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 22222333468889999999999998775
No 29
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.97 E-value=1.6e-29 Score=260.81 Aligned_cols=332 Identities=25% Similarity=0.313 Sum_probs=244.2
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch----------------hh
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS----------------FK 307 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~----------------~~ 307 (732)
||++|++. .+|++..+.+++++|.+.||+|.+++....... .+...++.++..+.... +.
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE--ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLL 76 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc--ccccCCceEEeccccccccChHhHHHHHHHHHHHH
Confidence 68899888 789999999999999999999999985543322 45567888776654430 22
Q ss_pred hhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh---------HhHHH-hhhhhccccEEEEecHHhHHHhh
Q 004760 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR---------EYFDR-AKLVLDRVKLLVFLSESQTKQWL 377 (732)
Q Consensus 308 ~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~---------~~~~~-~~~~l~r~~~li~vS~~~~~~~~ 377 (732)
...+||+|++++.... ++ ..+.....+.+.++++++.... ..+.. .+..+...+.++++|+.....
T Consensus 77 ~~~~~dvv~~~~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-- 152 (359)
T cd03808 77 RKERPDIVHTHTPKPG-IL-GRLAARLAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDL-- 152 (359)
T ss_pred HhcCCCEEEEccccch-hH-HHHHHHHcCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHH--
Confidence 3679999999864322 12 2222222344556665543211 11111 123334478899999886442
Q ss_pred hHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCC
Q 004760 378 TWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKG 457 (732)
Q Consensus 378 ~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG 457 (732)
+ ......+ ....+.++++++|...+.+.... ...+.+.|+++|++.+.||
T Consensus 153 --~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~ 202 (359)
T cd03808 153 --A----LKLGIIK---------KKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKG 202 (359)
T ss_pred --H----HHhcCCC---------cCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccC
Confidence 2 1111110 01234778899998877554320 2345678999999999999
Q ss_pred HHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCC
Q 004760 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (732)
Q Consensus 458 ~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~ 537 (732)
++.+++++..+.++.++
T Consensus 203 ~~~li~~~~~l~~~~~~--------------------------------------------------------------- 219 (359)
T cd03808 203 IDELLEAARILKAKGPN--------------------------------------------------------------- 219 (359)
T ss_pred HHHHHHHHHHHHhcCCC---------------------------------------------------------------
Confidence 99999999998765554
Q ss_pred CCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhH
Q 004760 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRV 617 (732)
Q Consensus 538 ~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv 617 (732)
.+++++|.++........ +....+...+|.|+|+.+++
T Consensus 220 ----------------------~~l~i~G~~~~~~~~~~~--------------------~~~~~~~~~~v~~~g~~~~~ 257 (359)
T cd03808 220 ----------------------VRLLLVGDGDEENPAAIL--------------------EIEKLGLEGRVEFLGFRDDV 257 (359)
T ss_pred ----------------------eEEEEEcCCCcchhhHHH--------------------HHHhcCCcceEEEeeccccH
Confidence 246667776543333221 11223566899999999999
Q ss_pred HHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHH
Q 004760 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVR 697 (732)
Q Consensus 618 ~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r 697 (732)
.++|+.||++++||. .|++|++++|||+||+|||+++.++..|++.++.+|++++++|+ ++++++|..++.|++.+
T Consensus 258 ~~~~~~adi~i~ps~--~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~--~~~~~~i~~l~~~~~~~ 333 (359)
T cd03808 258 PELLAAADVFVLPSY--REGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDA--EALADAIERLIEDPELR 333 (359)
T ss_pred HHHHHhccEEEecCc--ccCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCH--HHHHHHHHHHHhCHHHH
Confidence 999999999999998 79999999999999999999999999999998899999998887 99999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 698 ERMAMEGRKKVERMYLKKHMYKKLS 722 (732)
Q Consensus 698 ~~m~~~~r~~v~~~ys~~~~~~~~~ 722 (732)
+++++++++.+.++|+++.+++++.
T Consensus 334 ~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 334 ARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9999999999989999999999886
No 30
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.97 E-value=7.7e-30 Score=286.47 Aligned_cols=357 Identities=17% Similarity=0.194 Sum_probs=244.5
Q ss_pred eEEEEeCCC----CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH--------------------------HhC
Q 004760 244 KFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL--------------------------ARR 293 (732)
Q Consensus 244 kIllI~h~l----s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el--------------------------~~~ 293 (732)
||++|+.|. ..||...++-.|+++|+++||+|.|+++.- +...... ...
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY-GCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC-cChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 799999984 479999999999999999999999999543 3222211 123
Q ss_pred CcEEEEcCCC--------------ch-------h-------hh--hcCccEEEeCCchhhHHHHHHHHhhcCC-CccEEE
Q 004760 294 KIKVLEDRGE--------------PS-------F-------KT--SMKADLVIAGSAVCATWIDQYITRFPAG-GSQVVW 342 (732)
Q Consensus 294 gI~v~~~~~~--------------~~-------~-------~~--~~k~DlVia~Sav~~~~i~~~i~~~~~~-~~~ivw 342 (732)
|++++..... .. | .. ..+||+||+|...+ ..+..++...... ..+++.
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~-~~~~~~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHT-ALVPALLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHH-HHHHHHHHhhccCCCCCEEE
Confidence 5665432211 00 1 11 36899999997433 2233334333221 244677
Q ss_pred EEeechh------HhHH---------------------HhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCcccc
Q 004760 343 WIMENRR------EYFD---------------------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVP 395 (732)
Q Consensus 343 ~i~e~r~------~~~~---------------------~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~ 395 (732)
.+|.... ..+. ..+..+...+.++++|+..... ........+... +..
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~e----i~~~~~~~~l~~-~l~ 234 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYARE----ILTPEFGYGLDG-VLK 234 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHH----hcCCcCCccchh-HHH
Confidence 7764210 0000 0122345578889998875332 100000000000 000
Q ss_pred ccCCCccceEEeecCCCCCCCCCchhhH-----------HHhHHhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHH
Q 004760 396 LSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLV 462 (732)
Q Consensus 396 l~~n~~~~~v~vIpngvd~~~f~~~~~~-----------ekr~~~r~~~R~~lgl~~--~~~lil~vGri~~~KG~d~LL 462 (732)
. ....+.+|+||+|.+.|.|.... +.+...+..+|+++|++. +.++|+++||+.++||++.++
T Consensus 235 ~----~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li 310 (473)
T TIGR02095 235 A----RSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLL 310 (473)
T ss_pred h----cCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHH
Confidence 0 01245899999999998864210 011123467899999986 678999999999999999999
Q ss_pred HHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcc
Q 004760 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (732)
Q Consensus 463 eA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf 542 (732)
+|+..+.++.
T Consensus 311 ~a~~~l~~~~---------------------------------------------------------------------- 320 (473)
T TIGR02095 311 AALPELLELG---------------------------------------------------------------------- 320 (473)
T ss_pred HHHHHHHHcC----------------------------------------------------------------------
Confidence 9999886431
Q ss_pred cccCCCCccccCCcccceeEEeccCch--hhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHH
Q 004760 543 TSIGNTDAVSFGSGHLRRKVLSKSDGK--QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVA 618 (732)
Q Consensus 543 ~~~~~~d~v~iG~~~~~~~LlivG~G~--~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~ 618 (732)
.+++++|.|+ ..+.++.++ +. ...++.|.+.. +++.
T Consensus 321 -----------------~~lvi~G~g~~~~~~~l~~~~---------------------~~--~~~~v~~~~~~~~~~~~ 360 (473)
T TIGR02095 321 -----------------GQLVVLGTGDPELEEALRELA---------------------ER--YPGNVRVIIGYDEALAH 360 (473)
T ss_pred -----------------cEEEEECCCCHHHHHHHHHHH---------------------HH--CCCcEEEEEcCCHHHHH
Confidence 2577888874 122222222 22 23567666543 4578
Q ss_pred HHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccC------ceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN------VTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 619 ~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g------~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
.+|++||++++||. .|+||++++|||+||+|||+++.||+.|+|.++ .+|+++++.|+ ++|+++|.++++
T Consensus 361 ~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~--~~la~~i~~~l~ 436 (473)
T TIGR02095 361 LIYAGADFILMPSR--FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDP--GALLAALSRALR 436 (473)
T ss_pred HHHHhCCEEEeCCC--cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCH--HHHHHHHHHHHH
Confidence 99999999999998 999999999999999999999999999999987 89999999988 999999999887
Q ss_pred ----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 693 ----NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 693 ----n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
+++.+++|++++.+ +.|||++++++|.++|+++
T Consensus 437 ~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 437 LYRQDPSLWEALQKNAMS---QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHhcCHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHhC
Confidence 99999999988853 5799999999999999864
No 31
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=6.5e-30 Score=272.19 Aligned_cols=329 Identities=25% Similarity=0.265 Sum_probs=238.7
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc-----------------hhhh
Q 004760 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----------------SFKT 308 (732)
Q Consensus 246 llI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~-----------------~~~~ 308 (732)
++++.+...++++..+.+++..|. |++|.+++....+.........++.++...... .+.+
T Consensus 2 ~~~~~~~~~~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (367)
T cd05844 2 VLIFRPLLLAPSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRLLR 79 (367)
T ss_pred EEEEeCCCCCCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHHHH
Confidence 345566666679999999999994 888888886655443333333444433111100 0244
Q ss_pred hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech----hH---------hHHHhhhhhccccEEEEecHHhHHH
Q 004760 309 SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----RE---------YFDRAKLVLDRVKLLVFLSESQTKQ 375 (732)
Q Consensus 309 ~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r----~~---------~~~~~~~~l~r~~~li~vS~~~~~~ 375 (732)
..+||+||++....+.+. .......+.+ +++.+|... .. +.......+...+.++++|+.....
T Consensus 80 ~~~~dvvh~~~~~~~~~~--~~~~~~~~~p-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 156 (367)
T cd05844 80 RHRPDLVHAHFGFDGVYA--LPLARRLGVP-LVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRDR 156 (367)
T ss_pred hhCCCEEEeccCchHHHH--HHHHHHcCCC-EEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHHH
Confidence 789999999865432221 1122233444 455444210 00 0111223445588899999886442
Q ss_pred hhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCC
Q 004760 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPG 455 (732)
Q Consensus 376 ~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~ 455 (732)
+ ...+..+ ..+.++|||+|...|.+... ..+.+.++++|++.+.
T Consensus 157 ----~----~~~~~~~-----------~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G~~~~~ 200 (367)
T cd05844 157 ----L----LALGFPP-----------EKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVGRFVEK 200 (367)
T ss_pred ----H----HHcCCCH-----------HHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEEeeccc
Confidence 2 1222222 23489999999888765432 1345689999999999
Q ss_pred CCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCccccc
Q 004760 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (732)
Q Consensus 456 KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n 535 (732)
||++.+++|+..+.++.++
T Consensus 201 K~~~~li~a~~~l~~~~~~------------------------------------------------------------- 219 (367)
T cd05844 201 KGPLLLLEAFARLARRVPE------------------------------------------------------------- 219 (367)
T ss_pred cChHHHHHHHHHHHHhCCC-------------------------------------------------------------
Confidence 9999999999999776654
Q ss_pred CCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch-
Q 004760 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT- 614 (732)
Q Consensus 536 ~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~- 614 (732)
.+++++|+|+..+.++.++. .+++.++|.|+|++
T Consensus 220 ------------------------~~l~ivG~g~~~~~~~~~~~---------------------~~~~~~~v~~~g~~~ 254 (367)
T cd05844 220 ------------------------VRLVIIGDGPLLAALEALAR---------------------ALGLGGRVTFLGAQP 254 (367)
T ss_pred ------------------------eEEEEEeCchHHHHHHHHHH---------------------HcCCCCeEEECCCCC
Confidence 35778888876655555543 33677899999987
Q ss_pred -hhHHHHHHHcCEEEEccCC----CCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHH
Q 004760 615 -TRVASLYSAADVYVINSQG----LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (732)
Q Consensus 615 -~dv~~lysaADv~V~pS~~----~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~ 689 (732)
+++..+|+.||++|+||.. ..|+||++++||||||+|||+++.+|..|++.++.+|+++++.|+ ++++++|.+
T Consensus 255 ~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~--~~l~~~i~~ 332 (367)
T cd05844 255 HAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDV--AALAAALGR 332 (367)
T ss_pred HHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCH--HHHHHHHHH
Confidence 7899999999999999961 149999999999999999999999999999999999999998887 999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 690 LLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 690 LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~e 723 (732)
+++|++.+++|+.++++.+++.|+|+.+++++.+
T Consensus 333 l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 333 LLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 9999999999999999999999999999999875
No 32
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=1.8e-29 Score=259.16 Aligned_cols=329 Identities=26% Similarity=0.379 Sum_probs=240.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC----CcEEEEcCCCch---------hhhhc
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----KIKVLEDRGEPS---------FKTSM 310 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~----gI~v~~~~~~~~---------~~~~~ 310 (732)
||+++++....||++..+.+|+++|.+.||+|.+++.............. ............ +....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999965544322111100 011111111111 33367
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHH-------HhhhhhccccEEEEecHHhHHHhhhHHHhh
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD-------RAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~-------~~~~~l~r~~~li~vS~~~~~~~~~~~~~e 383 (732)
+||+||+++. ...++...+.... ..++++++|........ .....+...+.++++|+..... +
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~----~--- 150 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARL--GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKED----L--- 150 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhc--CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhh----H---
Confidence 9999999986 3334444444333 34567777654332222 1234455688899999886443 2
Q ss_pred hhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 004760 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (732)
Q Consensus 384 ~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLe 463 (732)
.+....+ ...+.+||||+|...+.+..... ..++...+.+.|+++|++.+.||++.+++
T Consensus 151 -~~~~~~~----------~~~~~vi~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~g~~~~~k~~~~~i~ 209 (353)
T cd03811 151 -LKLLGIP----------PDKIEVIYNPIDIEEIRALAEEP----------LELGIPPDGPVILAVGRLSPQKGFDTLIR 209 (353)
T ss_pred -HHhhcCC----------ccccEEecCCcChhhcCcccchh----------hhcCCCCCceEEEEEecchhhcChHHHHH
Confidence 1111111 12348999999998876543210 03456677889999999999999999999
Q ss_pred HHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCccc
Q 004760 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (732)
Q Consensus 464 A~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~ 543 (732)
|+..+.++.++
T Consensus 210 ~~~~l~~~~~~--------------------------------------------------------------------- 220 (353)
T cd03811 210 AFALLRKEGPD--------------------------------------------------------------------- 220 (353)
T ss_pred HHHHhhhcCCC---------------------------------------------------------------------
Confidence 99999766443
Q ss_pred ccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHH
Q 004760 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA 623 (732)
Q Consensus 544 ~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysa 623 (732)
.+++++|.|+....++..+ +.+++.++|.|+|+.+++.++|+.
T Consensus 221 ----------------~~l~i~G~~~~~~~~~~~~---------------------~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 221 ----------------ARLVILGDGPLREELEALA---------------------KELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred ----------------ceEEEEcCCccHHHHHHHH---------------------HhcCCCccEEEecccCCHHHHHHh
Confidence 2567778876655555444 233777899999999999999999
Q ss_pred cCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHH---HHHHHHHhcCHHHHHHH
Q 004760 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVL---AQNLRYLLKNPSVRERM 700 (732)
Q Consensus 624 ADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~L---a~aL~~LL~n~~~r~~m 700 (732)
||++++||. .|++|++++|||++|+|||+++.||..|+++++.+|+++++.+. +.+ ++++..+.++++.++++
T Consensus 264 ~d~~i~ps~--~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~ 339 (353)
T cd03811 264 ADLFVLSSR--YEGFPNVLLEAMALGTPVVATDCPGPREILEDGENGLLVPVGDE--AALAAAALALLDLLLDPELRERL 339 (353)
T ss_pred CCEEEeCcc--cCCCCcHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEECCCCH--HHHHHHHHHHHhccCChHHHHHH
Confidence 999999998 89999999999999999999999999999999999999998887 788 78888888999999999
Q ss_pred HHHHHHHHHHhcC
Q 004760 701 AMEGRKKVERMYL 713 (732)
Q Consensus 701 ~~~~r~~v~~~ys 713 (732)
+.++++.+.++|+
T Consensus 340 ~~~~~~~~~~~~~ 352 (353)
T cd03811 340 AAAARERVAREYS 352 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9988888888776
No 33
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=2.2e-29 Score=265.25 Aligned_cols=331 Identities=24% Similarity=0.284 Sum_probs=239.1
Q ss_pred eEEEEeCCCC--CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch----------h----h
Q 004760 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS----------F----K 307 (732)
Q Consensus 244 kIllI~h~ls--~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~----------~----~ 307 (732)
|||+|++... .||++..+.+|+++|.+.||+|.+++...... .......++++........ + .
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPK-GRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKK 79 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCc-chhhhccCceEEEeecccccccccccHHHHHHHHh
Confidence 6888887765 69999999999999999999999999654333 3333345555554332211 1 1
Q ss_pred hhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh------HhHH-HhhhhhccccEEEEecHHhHHHhhhHH
Q 004760 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------EYFD-RAKLVLDRVKLLVFLSESQTKQWLTWC 380 (732)
Q Consensus 308 ~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~------~~~~-~~~~~l~r~~~li~vS~~~~~~~~~~~ 380 (732)
...+||+||+++......+...+. ..+.+ .+++.|.... .++. ..+..+..++.++++|+..... .
T Consensus 80 ~~~~~Dii~~~~~~~~~~~~~~~~--~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~----~ 152 (357)
T cd03795 80 LAKKADVIHLHFPNPLADLALLLL--PRKKP-VVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAET----S 152 (357)
T ss_pred cCCCCCEEEEecCcchHHHHHHHh--ccCce-EEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHH----H
Confidence 267999999987554332222211 12333 4444442211 1111 1223455688899998885331 1
Q ss_pred HhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHH
Q 004760 381 EEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLL 460 (732)
Q Consensus 381 ~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~ 460 (732)
......+ ..+.+||||+|...+.+..... . .......+.+.|+++|++.+.||++.
T Consensus 153 ----~~~~~~~-----------~~~~~i~~gi~~~~~~~~~~~~------~---~~~~~~~~~~~i~~~G~~~~~K~~~~ 208 (357)
T cd03795 153 ----PVLRRFR-----------DKVRVIPLGLDPARYPRPDALE------E---AIWRRAAGRPFFLFVGRLVYYKGLDV 208 (357)
T ss_pred ----HHhcCCc-----------cceEEecCCCChhhcCCcchhh------h---HhhcCCCCCcEEEEecccccccCHHH
Confidence 1111111 1248999999999886543210 1 22344567788999999999999999
Q ss_pred HHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCC
Q 004760 461 LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPS 540 (732)
Q Consensus 461 LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~ 540 (732)
+++|+..+. +
T Consensus 209 li~a~~~l~----~------------------------------------------------------------------ 218 (357)
T cd03795 209 LLEAAAALP----D------------------------------------------------------------------ 218 (357)
T ss_pred HHHHHHhcc----C------------------------------------------------------------------
Confidence 999999773 2
Q ss_pred cccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHH
Q 004760 541 LFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVA 618 (732)
Q Consensus 541 lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~ 618 (732)
.+++++|+|+....++.++ +.+++.++|.|+|++ +++.
T Consensus 219 -------------------~~l~i~G~g~~~~~~~~~~---------------------~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 219 -------------------APLVIVGEGPLEAELEALA---------------------AALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred -------------------cEEEEEeCChhHHHHHHHH---------------------HhcCCcceEEEcCCCCHHHHH
Confidence 2567788886655444433 233778899999987 5699
Q ss_pred HHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc-CceEEEECCCCCcHHHHHHHHHHHhcCHHHH
Q 004760 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH-NVTGLLHPPGHPGAQVLAQNLRYLLKNPSVR 697 (732)
Q Consensus 619 ~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~-g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r 697 (732)
.+|+.||++++||....|+||++++|||+||+|||+++.++..|++.+ +.+|++++++|. ++++++|..+++|++.+
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~--~~~~~~i~~l~~~~~~~ 336 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDP--AALAEAIRRLLEDPELR 336 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCH--HHHHHHHHHHHHCHHHH
Confidence 999999999999963369999999999999999999999999999886 899999998888 99999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHH
Q 004760 698 ERMAMEGRKKVERMYLKKHMY 718 (732)
Q Consensus 698 ~~m~~~~r~~v~~~ys~~~~~ 718 (732)
++|++++++.++++|+++.++
T Consensus 337 ~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 337 ERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred HHHHHHHHHHHHHhcchHhhC
Confidence 999999999999999999874
No 34
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=9.3e-30 Score=266.74 Aligned_cols=314 Identities=18% Similarity=0.129 Sum_probs=221.7
Q ss_pred CeEEEEeCCC------CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEc--CCC-----c-----
Q 004760 243 RKFILIFHEL------SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED--RGE-----P----- 304 (732)
Q Consensus 243 ~kIllI~h~l------s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~--~~~-----~----- 304 (732)
.||++|++.+ ..||+++.+.+|+.+|.+.||+|.+++....... ..+.......... ... .
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTA-APLVPVVPEPLRLDAPGRDRAEAEALALA 79 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcc-cceeeccCCCcccccchhhHhhHHHHHHH
Confidence 3899999988 8999999999999999999999999996543211 1110000000000 000 0
Q ss_pred -hhhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhhHHHhh
Q 004760 305 -SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (732)
Q Consensus 305 -~~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e 383 (732)
.+....+||+||+|+.....+ .....+ .++++++|.....+.............++++|+..... +
T Consensus 80 ~~~~~~~~~Divh~~~~~~~~~-----~~~~~~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~----~--- 146 (335)
T cd03802 80 ERALAAGDFDIVHNHSLHLPLP-----FARPLP-VPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRP----W--- 146 (335)
T ss_pred HHHHhcCCCCEEEecCcccchh-----hhcccC-CCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhh----c---
Confidence 033367999999987655433 222233 34677776543332222222334466788888876331 1
Q ss_pred hhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 004760 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (732)
Q Consensus 384 ~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLe 463 (732)
. .. ..+.+||||+|++.|.+.. ..+..++++|++.+.||++.+++
T Consensus 147 -~--~~-------------~~~~vi~ngvd~~~~~~~~-------------------~~~~~i~~~Gr~~~~Kg~~~li~ 191 (335)
T cd03802 147 -P--PL-------------PWVATVHNGIDLDDYPFRG-------------------PKGDYLLFLGRISPEKGPHLAIR 191 (335)
T ss_pred -c--cc-------------cccEEecCCcChhhCCCCC-------------------CCCCEEEEEEeeccccCHHHHHH
Confidence 0 00 1248999999999886522 23457899999999999999999
Q ss_pred HHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCccc
Q 004760 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (732)
Q Consensus 464 A~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~ 543 (732)
+++.. +
T Consensus 192 ~~~~~-----~--------------------------------------------------------------------- 197 (335)
T cd03802 192 AARRA-----G--------------------------------------------------------------------- 197 (335)
T ss_pred HHHhc-----C---------------------------------------------------------------------
Confidence 87532 1
Q ss_pred ccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHHHHH
Q 004760 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLY 621 (732)
Q Consensus 544 ~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~ly 621 (732)
.+++++|.|+....+...+. .. ..+.++|.|+|+. +++..+|
T Consensus 198 ----------------~~l~i~G~~~~~~~~~~~~~-----------------~~---~~~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 198 ----------------IPLKLAGPVSDPDYFYREIA-----------------PE---LLDGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred ----------------CeEEEEeCCCCHHHHHHHHH-----------------Hh---cccCCcEEEeCCCCHHHHHHHH
Confidence 24677787765444333321 11 0145789999986 5688999
Q ss_pred HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHH
Q 004760 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMA 701 (732)
Q Consensus 622 saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~ 701 (732)
+.||++|+||.+ .|+||++++||||||+|||++|.||..|+++++.+|+++++ + ++|+++|..+++.+ .
T Consensus 242 ~~~d~~v~ps~~-~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~--~--~~l~~~l~~l~~~~------~ 310 (335)
T cd03802 242 GNARALLFPILW-EEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDS--V--EELAAAVARADRLD------R 310 (335)
T ss_pred HhCcEEEeCCcc-cCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCC--H--HHHHHHHHHHhccH------H
Confidence 999999999973 69999999999999999999999999999999999999986 4 89999999986643 2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 702 MEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 702 ~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+++++.+.++|+|+.++++|+++|+
T Consensus 311 ~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 311 AACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 4567778889999999999999884
No 35
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=4.3e-29 Score=261.73 Aligned_cols=345 Identities=21% Similarity=0.252 Sum_probs=240.3
Q ss_pred eEEEEeCCCC-CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh-CCcEEEEcCCCch------hhhhcCccEE
Q 004760 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR-RKIKVLEDRGEPS------FKTSMKADLV 315 (732)
Q Consensus 244 kIllI~h~ls-~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~-~gI~v~~~~~~~~------~~~~~k~DlV 315 (732)
||++|..... .||.+.++.+|+++|.+.||+|.+++............. .+........... +....+||+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 6889988887 899999999999999999999999996654432211111 1122222111111 3347799999
Q ss_pred EeCCchh--hHHHHHHHHhh-cCCCccEEEEEeec-hh----HhHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhc
Q 004760 316 IAGSAVC--ATWIDQYITRF-PAGGSQVVWWIMEN-RR----EYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL 387 (732)
Q Consensus 316 ia~Sav~--~~~i~~~i~~~-~~~~~~ivw~i~e~-r~----~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l 387 (732)
|++.... .......+... .....++++++|.. .. ......+..+..++.++++|...... +. . .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~---~~----~-~ 152 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRA---LL----L-R 152 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHH---HH----h-h
Confidence 9875211 11111111111 11234467777664 11 11111234455688899997332111 11 1 0
Q ss_pred cCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHH
Q 004760 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (732)
Q Consensus 388 ~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~ 467 (732)
.. ...+.+||||++...+.+.... ++.....+.+.++++|++.+.||++.+++|+..
T Consensus 153 ~~------------~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~ 209 (366)
T cd03822 153 AY------------PEKIAVIPHGVPDPPAEPPESL-----------KALGGLDGRPVLLTFGLLRPYKGLELLLEALPL 209 (366)
T ss_pred cC------------CCcEEEeCCCCcCcccCCchhh-----------HhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHH
Confidence 11 1234899999998877654321 234445677899999999999999999999999
Q ss_pred hHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCC
Q 004760 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (732)
Q Consensus 468 l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~ 547 (732)
+.++.++
T Consensus 210 ~~~~~~~------------------------------------------------------------------------- 216 (366)
T cd03822 210 LVAKHPD------------------------------------------------------------------------- 216 (366)
T ss_pred HHhhCCC-------------------------------------------------------------------------
Confidence 9776554
Q ss_pred CCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccc---hhhHHHHHHHc
Q 004760 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA---TTRVASLYSAA 624 (732)
Q Consensus 548 ~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~---~~dv~~lysaA 624 (732)
.+++++|.+......... ... .+.+.+++.++|.|+|. .+++..+|+.|
T Consensus 217 ------------~~l~i~G~~~~~~~~~~~---------------~~~-~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~a 268 (366)
T cd03822 217 ------------VRLLVAGETHPDLERYRG---------------EAY-ALAERLGLADRVIFINRYLPDEELPELFSAA 268 (366)
T ss_pred ------------eEEEEeccCccchhhhhh---------------hhH-hHHHhcCCCCcEEEecCcCCHHHHHHHHhhc
Confidence 245666766432211110 000 12233488889999986 47899999999
Q ss_pred CEEEEccCCCCC--CCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 625 DVYVINSQGLGE--TFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAM 702 (732)
Q Consensus 625 Dv~V~pS~~~~E--gfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~ 702 (732)
|++++||. .| ++|.+++||||||+|||+++.|+ .+.+.++.+|++++++|. ++++++|..+++|++.+.+|++
T Consensus 269 d~~v~ps~--~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d~--~~~~~~l~~l~~~~~~~~~~~~ 343 (366)
T cd03822 269 DVVVLPYR--SADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGTGLLVPPGDP--AALAEAIRRLLADPELAQALRA 343 (366)
T ss_pred CEEEeccc--ccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCCcEEEcCCCH--HHHHHHHHHHHcChHHHHHHHH
Confidence 99999998 88 99999999999999999999999 777777789999999887 9999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 703 EGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 703 ~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
++++.+++ |+|+.+++++.++|+
T Consensus 344 ~~~~~~~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 344 RAREYARA-MSWERVAERYLRLLA 366 (366)
T ss_pred HHHHHHhh-CCHHHHHHHHHHHhC
Confidence 99999987 999999999999873
No 36
>PLN02939 transferase, transferring glycosyl groups
Probab=99.97 E-value=3.4e-29 Score=295.33 Aligned_cols=364 Identities=15% Similarity=0.175 Sum_probs=251.9
Q ss_pred CCeEEEEeCCC----CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh-hHH--------------------------
Q 004760 242 SRKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-PEL-------------------------- 290 (732)
Q Consensus 242 ~~kIllI~h~l----s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~-~el-------------------------- 290 (732)
+.+|++|+-|. ..||-.-++-.|+++|++.||+|.||++.-. .+. ...
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~-~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~ 559 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD-CMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTG 559 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc-ccChhhhhcccccceEEEEeecCceeEEEEEEE
Confidence 48999999998 4789999999999999999999999996432 221 100
Q ss_pred HhCCcEEEEcCC--C------------ch-------h-------hh--hcCccEEEeCCchhhHHHHHHHHhh---cCCC
Q 004760 291 ARRKIKVLEDRG--E------------PS-------F-------KT--SMKADLVIAGSAVCATWIDQYITRF---PAGG 337 (732)
Q Consensus 291 ~~~gI~v~~~~~--~------------~~-------~-------~~--~~k~DlVia~Sav~~~~i~~~i~~~---~~~~ 337 (732)
...||+++.... . .. | .. ..+|||||+|-..++...+.+...+ ....
T Consensus 560 ~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~ 639 (977)
T PLN02939 560 TVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNS 639 (977)
T ss_pred EECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCC
Confidence 013455553321 0 00 1 11 3699999998655543222222211 1122
Q ss_pred ccEEEEEeechh----------------HhH---HH-----------hhhhhccccEEEEecHHhHHHhhhHHHhhhh--
Q 004760 338 SQVVWWIMENRR----------------EYF---DR-----------AKLVLDRVKLLVFLSESQTKQWLTWCEEEKL-- 385 (732)
Q Consensus 338 ~~ivw~i~e~r~----------------~~~---~~-----------~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i-- 385 (732)
.+++..||.... .++ +. .+..+...+.++++|+..+....+ ....++
T Consensus 640 ~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~t-e~G~GL~~ 718 (977)
T PLN02939 640 ARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRS-EGGRGLQD 718 (977)
T ss_pred CcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHH-HhccchHH
Confidence 457777774310 001 00 111222478899999987543111 000000
Q ss_pred hccCCCccccccCCCccceEEeecCCCCCCCCCchhh-----------HHHhHHhHHHHHHHhCCCC---CCEEEEEEec
Q 004760 386 KLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM-----------REKRNLLRDSVRKEMGLTD---QDMLVLSLSS 451 (732)
Q Consensus 386 ~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~-----------~ekr~~~r~~~R~~lgl~~---~~~lil~vGr 451 (732)
.++..+ . .+.+|+||+|+..|.|... -+.+...+..+|+++|++. +.++|++|||
T Consensus 719 ~L~~~~-------~----Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGR 787 (977)
T PLN02939 719 TLKFHS-------K----KFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITR 787 (977)
T ss_pred Hhcccc-------C----CceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeec
Confidence 011111 2 3489999999998887531 0111223467999999985 4589999999
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCc
Q 004760 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (732)
Q Consensus 452 i~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P 531 (732)
+.++||++.+++|+..+.+. +
T Consensus 788 L~~QKGiDlLleA~~~Ll~~--d--------------------------------------------------------- 808 (977)
T PLN02939 788 LVPQKGVHLIRHAIYKTAEL--G--------------------------------------------------------- 808 (977)
T ss_pred CCcccChHHHHHHHHHHhhc--C---------------------------------------------------------
Confidence 99999999999999877531 1
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEc
Q 004760 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT 611 (732)
Q Consensus 532 ~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~ 611 (732)
.+++++|+|++.. + ...++.+.+.++..++|.|+
T Consensus 809 ----------------------------vqLVIvGdGp~~~-~-----------------e~eL~~La~~l~l~drV~Fl 842 (977)
T PLN02939 809 ----------------------------GQFVLLGSSPVPH-I-----------------QREFEGIADQFQSNNNIRLI 842 (977)
T ss_pred ----------------------------CEEEEEeCCCcHH-H-----------------HHHHHHHHHHcCCCCeEEEE
Confidence 2577888886421 1 11123334455777899999
Q ss_pred cchhh--HHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc---------CceEEEECCCCCcH
Q 004760 612 PATTR--VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH---------NVTGLLHPPGHPGA 680 (732)
Q Consensus 612 G~~~d--v~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~---------g~~Gll~~~~d~~~ 680 (732)
|..++ ...+|++||+||+||+ +|+||++++|||+||+|+|++++||+.|+|.+ +.+|++++++|+
T Consensus 843 G~~de~lah~IYAaADIFLmPSr--~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~-- 918 (977)
T PLN02939 843 LKYDEALSHSIYAASDMFIIPSM--FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDE-- 918 (977)
T ss_pred eccCHHHHHHHHHhCCEEEECCC--ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCH--
Confidence 97754 4689999999999998 99999999999999999999999999999865 579999999888
Q ss_pred HHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 681 QVLAQNLRYLLK----NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 681 e~La~aL~~LL~----n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
++|+++|.+++. |++.+++|++++. .+.|+|+.++++|.++|+.++.
T Consensus 919 eaLa~AL~rAL~~~~~dpe~~~~L~~~am---~~dFSWe~~A~qYeeLY~~ll~ 969 (977)
T PLN02939 919 QGLNSALERAFNYYKRKPEVWKQLVQKDM---NIDFSWDSSASQYEELYQRAVA 969 (977)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHH
Confidence 999999988764 8999999988764 3579999999999999998875
No 37
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=2.4e-29 Score=278.69 Aligned_cols=323 Identities=13% Similarity=0.111 Sum_probs=216.2
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEE-------------------cCCCc
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE-------------------DRGEP 304 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~-------------------~~~~~ 304 (732)
|||+|.-.+++|||++.+++||+.|.+.||+|.++.+...++..+++. ..++... .....
T Consensus 2 kil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 2 NILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSH-QNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred eEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccccc-CCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 899999999999999999999999999999999999877666543321 2221111 00001
Q ss_pred h-------hhhhcCccEEEeCCchhh---H-HHHHHHH--hhcCCCccEEEEEeechhH---------------------
Q 004760 305 S-------FKTSMKADLVIAGSAVCA---T-WIDQYIT--RFPAGGSQVVWWIMENRRE--------------------- 350 (732)
Q Consensus 305 ~-------~~~~~k~DlVia~Sav~~---~-~i~~~i~--~~~~~~~~ivw~i~e~r~~--------------------- 350 (732)
+ +....+||+||.|..... . .+..+.. .......+++|..|.+-.-
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 1 224779999999965542 1 1112211 1223335699988742100
Q ss_pred ----h----HH-------Hhhhhh----ccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCC
Q 004760 351 ----Y----FD-------RAKLVL----DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCS 411 (732)
Q Consensus 351 ----~----~~-------~~~~~l----~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpng 411 (732)
| ++ ..+..+ .....++..|+..... . .. .+.. . .+.+||||
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~----~----~~-~~~~-------~----~i~vI~NG 220 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADA----F----NS-LYGP-------G----RCRIINNG 220 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHH----H----HH-HcCC-------C----CEEEeCCC
Confidence 1 01 111111 1234667777765331 1 11 1111 1 34899999
Q ss_pred CCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEec-C-CCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccc
Q 004760 412 LNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS-I-NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (732)
Q Consensus 412 vd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGr-i-~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~ 489 (732)
+|++.+.+..... ..+ .+.+..+|+++|+ + .++||++.+++|+..+. ++
T Consensus 221 id~~~~~~~~~~~-------~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~---~~--------------- 271 (405)
T PRK10125 221 IDMATEAILAELP-------PVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG---DK--------------- 271 (405)
T ss_pred cCccccccccccc-------ccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC---CC---------------
Confidence 9975432211100 001 1345668899998 4 47899999999998651 11
Q ss_pred cccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCch
Q 004760 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (732)
Q Consensus 490 ~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~ 569 (732)
.+|+++|.|+
T Consensus 272 ----------------------------------------------------------------------~~L~ivG~g~ 281 (405)
T PRK10125 272 ----------------------------------------------------------------------IELHTFGKFS 281 (405)
T ss_pred ----------------------------------------------------------------------eEEEEEcCCC
Confidence 2567777764
Q ss_pred hhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccc---hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHH
Q 004760 570 QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEAM 646 (732)
Q Consensus 570 ~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~---~~dv~~lysaADv~V~pS~~~~Egfg~vilEAM 646 (732)
... .++|.++|. ..++.++|++||+||+||. .|+||++++|||
T Consensus 282 ~~~--------------------------------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAm 327 (405)
T PRK10125 282 PFT--------------------------------AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEAL 327 (405)
T ss_pred ccc--------------------------------ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHH
Confidence 211 124566664 3678999999999999998 999999999999
Q ss_pred HcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHH----HHHHHHHHHHHhcCHHHHHHHHH
Q 004760 647 AFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRER----MAMEGRKKVERMYLKKHMYKKLS 722 (732)
Q Consensus 647 A~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~----m~~~~r~~v~~~ys~~~~~~~~~ 722 (732)
|||+|||+|++||++|++.++ +|++++++|+ ++||+.+ ++..+++ +..++++++.+.|+++.|+++|+
T Consensus 328 A~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~--~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~ 399 (405)
T PRK10125 328 SIGVPVIATHSDAAREVLQKS-GGKTVSEEEV--LQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYV 399 (405)
T ss_pred HcCCCEEEeCCCChHHhEeCC-cEEEECCCCH--HHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999875 9999999998 9999853 4444333 23568888888999999999999
Q ss_pred HHHHHh
Q 004760 723 QVIYKC 728 (732)
Q Consensus 723 ev~~~~ 728 (732)
++|+++
T Consensus 400 ~lY~~l 405 (405)
T PRK10125 400 NFYQNL 405 (405)
T ss_pred HHHHhC
Confidence 999863
No 38
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=4.1e-29 Score=261.12 Aligned_cols=332 Identities=21% Similarity=0.274 Sum_probs=237.7
Q ss_pred eEEEEeCCCC--CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEE--E----------cCCCch---h
Q 004760 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--E----------DRGEPS---F 306 (732)
Q Consensus 244 kIllI~h~ls--~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~--~----------~~~~~~---~ 306 (732)
||++|++... .||++..+.+||++|.+.||+|.+++......... . ...+.+. . ...... +
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEG-P-ARVVPVPSVPLPGYPEIRLALPPRRRVRRL 78 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccC-C-CCceeecccccCcccceEecccchhhHHHH
Confidence 5788886663 38999999999999999999999998543321100 0 0111110 0 001111 2
Q ss_pred hhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHH-------------HhhhhhccccEEEEecHHhH
Q 004760 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD-------------RAKLVLDRVKLLVFLSESQT 373 (732)
Q Consensus 307 ~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~-------------~~~~~l~r~~~li~vS~~~~ 373 (732)
....+||+||+++.....+....+ ....+.+ +++++|.....+.. ..+......+.+++.|+...
T Consensus 79 ~~~~~pdii~~~~~~~~~~~~~~~-~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~ 156 (364)
T cd03814 79 LDAFAPDVVHIATPGPLGLAALRA-ARRLGIP-VVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLA 156 (364)
T ss_pred HHhcCCCEEEEeccchhhHHHHHH-HHHcCCC-EEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHH
Confidence 236799999998654433333222 2233344 55556543221111 11122344778888888753
Q ss_pred HHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCC
Q 004760 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (732)
Q Consensus 374 ~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~ 453 (732)
.. . ..... ..+.++++|+|...|.+.... ...+++++ ..+.+.++++|++.
T Consensus 157 ~~----~----~~~~~-------------~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~-~~~~~~i~~~G~~~ 207 (364)
T cd03814 157 DE----L----RARGF-------------RRVRLWPRGVDTELFHPRRRD-------EALRARLG-PPDRPVLLYVGRLA 207 (364)
T ss_pred HH----H----hccCC-------------CceeecCCCccccccCccccc-------HHHHHHhC-CCCCeEEEEEeccc
Confidence 21 1 11111 124799999999988665321 22345555 45667899999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCccc
Q 004760 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (732)
Q Consensus 454 ~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 533 (732)
+.||++.+++++..+.++ ++
T Consensus 208 ~~k~~~~~i~~~~~l~~~-~~----------------------------------------------------------- 227 (364)
T cd03814 208 PEKNLEALLDADLPLRRR-PP----------------------------------------------------------- 227 (364)
T ss_pred cccCHHHHHHHHHHhhhc-CC-----------------------------------------------------------
Confidence 999999999999998765 43
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccc
Q 004760 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (732)
Q Consensus 534 ~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~ 613 (732)
.+++++|+|+....++ +..++|.|+|+
T Consensus 228 --------------------------~~l~i~G~~~~~~~~~---------------------------~~~~~v~~~g~ 254 (364)
T cd03814 228 --------------------------VRLVIVGDGPARARLE---------------------------ARYPNVHFLGF 254 (364)
T ss_pred --------------------------ceEEEEeCCchHHHHh---------------------------ccCCcEEEEec
Confidence 2567778776544333 23468999995
Q ss_pred --hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHh
Q 004760 614 --TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (732)
Q Consensus 614 --~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL 691 (732)
.+++..+|+.||++++||. .|+||++++||||||+|||+++.++..|+++++.+|+++++.+. ++++++|..++
T Consensus 255 ~~~~~~~~~~~~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~--~~l~~~i~~l~ 330 (364)
T cd03814 255 LDGEELAAAYASADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDA--EAFAAALAALL 330 (364)
T ss_pred cCHHHHHHHHHhCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCH--HHHHHHHHHHH
Confidence 5789999999999999998 99999999999999999999999999999999899999998887 89999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 692 KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 692 ~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
.|++.+++|++++++.+ +.|+|+.+++++.++|+
T Consensus 331 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 331 ADPELRRRMAARARAEA-ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred cCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHhhC
Confidence 99999999999999998 56999999999999873
No 39
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=8.3e-29 Score=261.89 Aligned_cols=332 Identities=18% Similarity=0.203 Sum_probs=231.5
Q ss_pred eEEEEeCC-C--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch------------hhh
Q 004760 244 KFILIFHE-L--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS------------FKT 308 (732)
Q Consensus 244 kIllI~h~-l--s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~------------~~~ 308 (732)
||++|.-. . ..||++.++.+||.+|.+.||+|.|++..... ........|++++..+.... +..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYP-KQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILH 79 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCC-CCcccccCCceEEEcCCCCccchhhhHHHHHHHHH
Confidence 56677433 2 57999999999999999999999999954332 22244557899887665421 111
Q ss_pred h--cCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech----------hHhHHHh-hhhhccccEEEEecHHhHHH
Q 004760 309 S--MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----------REYFDRA-KLVLDRVKLLVFLSESQTKQ 375 (732)
Q Consensus 309 ~--~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r----------~~~~~~~-~~~l~r~~~li~vS~~~~~~ 375 (732)
. .++|++++++..........+... .+ .++++++|... ..++... .......+.++++|+.....
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 157 (363)
T cd04955 80 ALFVKRDIDHVHALGPAIAPFLPLLRL-KG-KKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEY 157 (363)
T ss_pred HHhccCCeEEEEecCccHHHHHHHHHh-cC-CCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHHH
Confidence 1 244444444322111111111211 23 34666665321 1111111 12334578899999887443
Q ss_pred hhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCC
Q 004760 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPG 455 (732)
Q Consensus 376 ~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~ 455 (732)
.. ...+.. . .+||||+|...+.+. ...++.++++++. .++++|++.+.
T Consensus 158 ----~~---~~~~~~----------~----~~i~ngv~~~~~~~~----------~~~~~~~~~~~~~-~i~~~G~~~~~ 205 (363)
T cd04955 158 ----LK---EKYGRD----------S----TYIPYGADHVVSSEE----------DEILKKYGLEPGR-YYLLVGRIVPE 205 (363)
T ss_pred ----HH---HhcCCC----------C----eeeCCCcChhhcchh----------hhhHHhcCCCCCc-EEEEEeccccc
Confidence 10 111211 1 689999999877541 1234556766554 57799999999
Q ss_pred CCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCccccc
Q 004760 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (732)
Q Consensus 456 KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n 535 (732)
||++.+++|++.+.. +
T Consensus 206 Kg~~~li~a~~~l~~---~------------------------------------------------------------- 221 (363)
T cd04955 206 NNIDDLIEAFSKSNS---G------------------------------------------------------------- 221 (363)
T ss_pred CCHHHHHHHHHhhcc---C-------------------------------------------------------------
Confidence 999999999987732 1
Q ss_pred CCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch-
Q 004760 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT- 614 (732)
Q Consensus 536 ~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~- 614 (732)
.+++++|.|+....+...+ .+.++..++|+|+|+.
T Consensus 222 ------------------------~~l~ivG~~~~~~~~~~~~--------------------~~~~~~~~~V~~~g~~~ 257 (363)
T cd04955 222 ------------------------KKLVIVGNADHNTPYGKLL--------------------KEKAAADPRIIFVGPIY 257 (363)
T ss_pred ------------------------ceEEEEcCCCCcchHHHHH--------------------HHHhCCCCcEEEccccC
Confidence 2467778775443333222 2123667899999976
Q ss_pred -hhHHHHHHHcCEEEEccCCCC-CCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 615 -TRVASLYSAADVYVINSQGLG-ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 615 -~dv~~lysaADv~V~pS~~~~-Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
+++..+|..||++++||. . |+||++++|||+||+|||+|+.|+..|++++ +|.++++++. ++++|..+++
T Consensus 258 ~~~~~~~~~~ad~~v~ps~--~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~----l~~~i~~l~~ 329 (363)
T cd04955 258 DQELLELLRYAALFYLHGH--SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGDD----LASLLEELEA 329 (363)
T ss_pred hHHHHHHHHhCCEEEeCCc--cCCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCchH----HHHHHHHHHh
Confidence 678999999999999998 5 9999999999999999999999999999986 7888876652 9999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 693 NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 693 n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+++.+.+|++++++.+.+.|+|+.++++++++|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 330 DPEEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999989999999999999874
No 40
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.97 E-value=7e-29 Score=296.27 Aligned_cols=367 Identities=16% Similarity=0.148 Sum_probs=245.4
Q ss_pred CCcHHHHHHHHHHHHHHCC--CEEEEEEeCCCCCC--------hhHH-------------HhCCcEEEEcCCCch-----
Q 004760 254 MTGAPLSMMELATELLSCG--ATVSAVVLSKRGGL--------MPEL-------------ARRKIKVLEDRGEPS----- 305 (732)
Q Consensus 254 ~gGA~~~~~eLA~~L~~~G--~~V~vv~l~~~g~l--------~~el-------------~~~gI~v~~~~~~~~----- 305 (732)
.||--+++++||++|+++| |+|.++|-....+- .+.+ ...|+.|+..++.+.
T Consensus 194 tGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~ 273 (1050)
T TIGR02468 194 TGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIP 273 (1050)
T ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcC
Confidence 4678889999999999998 89999984322110 0011 124788776553221
Q ss_pred -----------------hhhh--------------cCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeec-hh----
Q 004760 306 -----------------FKTS--------------MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN-RR---- 349 (732)
Q Consensus 306 -----------------~~~~--------------~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~-r~---- 349 (732)
+... ..||+||+|-+..+ +. +.+.....+.| .+...|.. +.
T Consensus 274 Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG-~a-a~~L~~~lgVP-~V~T~HSLgr~K~~~ 350 (1050)
T TIGR02468 274 KEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAG-DS-AALLSGALNVP-MVLTGHSLGRDKLEQ 350 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHH-HH-HHHHHHhhCCC-EEEECccchhhhhhh
Confidence 1111 14999999853322 11 22222333445 55555521 00
Q ss_pred -------------------HhHHHhhhhhccccEEEEecHHhHH-HhhhHHHhhhhhccCCCcc-------ccccCCC--
Q 004760 350 -------------------EYFDRAKLVLDRVKLLVFLSESQTK-QWLTWCEEEKLKLRSQPAV-------VPLSVND-- 400 (732)
Q Consensus 350 -------------------~~~~~~~~~l~r~~~li~vS~~~~~-~~~~~~~~e~i~l~~~~~~-------v~l~~n~-- 400 (732)
..+..-...+..++.+|+.|..... +|.. + -.+.|.+ +--++..
T Consensus 351 ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~l-Y------~~~~~~~~~~~~~~~~~gv~~~g 423 (1050)
T TIGR02468 351 LLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGL-Y------DGFDVILERKLRARARRGVSCYG 423 (1050)
T ss_pred hcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHH-h------ccCCchhhhhhhhhhcccccccc
Confidence 0011112345568899999877643 2111 1 0111100 0000000
Q ss_pred -ccceEEeecCCCCCCCCCchhhHHHhHH-------------hHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHH
Q 004760 401 -ELAFVAGFTCSLNTPTSSPEKMREKRNL-------------LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQ 466 (732)
Q Consensus 401 -~~~~v~vIpngvd~~~f~~~~~~ekr~~-------------~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~ 466 (732)
....+.|||||+|+..|.|......+.. ....++. +..+.+.++|+++||+.+.||++.||+|+.
T Consensus 424 ~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r-~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~ 502 (1050)
T TIGR02468 424 RFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMR-FFTNPRKPMILALARPDPKKNITTLVKAFG 502 (1050)
T ss_pred cCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHh-hcccCCCcEEEEEcCCccccCHHHHHHHHH
Confidence 0125699999999999987532111100 1123333 344667789999999999999999999999
Q ss_pred HhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccC
Q 004760 467 LMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIG 546 (732)
Q Consensus 467 ~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~ 546 (732)
.+.+..+..
T Consensus 503 ~L~~l~~~~----------------------------------------------------------------------- 511 (1050)
T TIGR02468 503 ECRPLRELA----------------------------------------------------------------------- 511 (1050)
T ss_pred HhHhhccCC-----------------------------------------------------------------------
Confidence 886432210
Q ss_pred CCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccc--hhhHHHHHHHc
Q 004760 547 NTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAA 624 (732)
Q Consensus 547 ~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~--~~dv~~lysaA 624 (732)
.. .+++|.|+....+..- ..++..++.. +.+.+++.++|.|+|+ .++++.+|+.|
T Consensus 512 ------------nL-~LIiG~gdd~d~l~~~---------~~~~l~~L~~-li~~lgL~g~V~FlG~v~~edvp~lYr~A 568 (1050)
T TIGR02468 512 ------------NL-TLIMGNRDDIDEMSSG---------SSSVLTSVLK-LIDKYDLYGQVAYPKHHKQSDVPDIYRLA 568 (1050)
T ss_pred ------------CE-EEEEecCchhhhhhcc---------chHHHHHHHH-HHHHhCCCCeEEecCCCCHHHHHHHHHHh
Confidence 01 1345665433222110 1234444444 3455699999999997 48999999988
Q ss_pred ----CEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHH
Q 004760 625 ----DVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERM 700 (732)
Q Consensus 625 ----Dv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m 700 (732)
|+||+||. .|+||++++||||||+|||+|+.||+.|+|.++.+|+++++.|+ ++||++|..++.|++.+++|
T Consensus 569 d~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~--eaLA~AL~~LL~Dpelr~~m 644 (1050)
T TIGR02468 569 AKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQ--QAIADALLKLVADKQLWAEC 644 (1050)
T ss_pred hhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCH--HHHHHHHHHHhhCHHHHHHH
Confidence 69999997 99999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 701 AMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 701 ~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
++++++.++ .|+|+.++++|++.+..|..
T Consensus 645 ~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~ 673 (1050)
T TIGR02468 645 RQNGLKNIH-LFSWPEHCKTYLSRIASCRP 673 (1050)
T ss_pred HHHHHHHHH-HCCHHHHHHHHHHHHHHHhc
Confidence 999999986 59999999999999998864
No 41
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=1.9e-28 Score=251.65 Aligned_cols=342 Identities=25% Similarity=0.364 Sum_probs=249.8
Q ss_pred eEEEEeCCCCC--CcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEc---CC-C---ch---------
Q 004760 244 KFILIFHELSM--TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED---RG-E---PS--------- 305 (732)
Q Consensus 244 kIllI~h~ls~--gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~---~~-~---~~--------- 305 (732)
||++|++.... ||+...+.+|+++|.+.||+|.+++............ ........ .. . ..
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-GGIVVVRPPPLLRVRRLLLLLLLALRLRR 79 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-cCcceecCCcccccchhHHHHHHHHHHHH
Confidence 68888888753 8999999999999999999999999654433221111 11111100 00 0 00
Q ss_pred hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH------------hHHHhhhhhccccEEEEecHHhH
Q 004760 306 FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE------------YFDRAKLVLDRVKLLVFLSESQT 373 (732)
Q Consensus 306 ~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~------------~~~~~~~~l~r~~~li~vS~~~~ 373 (732)
+....+||+|++++........ ......+ .++++++|..... +.......+...+.+++.|+...
T Consensus 80 ~~~~~~~Dii~~~~~~~~~~~~--~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 80 LLRRERFDVVHAHDWLALLAAA--LAARLLG-IPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred HhhhcCCcEEEEechhHHHHHH--HHHHhcC-CcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 2336799999998755443332 1222223 3466666543221 11122344555889999998864
Q ss_pred HHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCC
Q 004760 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (732)
Q Consensus 374 ~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~ 453 (732)
.. . .+....+ ...+.++|||++...+.+.. ...+.......+.+.|+++|++.
T Consensus 157 ~~----~----~~~~~~~----------~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~ 209 (374)
T cd03801 157 EE----L----RELGGVP----------PEKITVIPNGVDTERFRPAP---------RAARRRLGIPEDEPVILFVGRLV 209 (374)
T ss_pred HH----H----HhcCCCC----------CCcEEEecCcccccccCccc---------hHHHhhcCCcCCCeEEEEecchh
Confidence 43 1 1111110 12458999999998886543 12234455566778999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCccc
Q 004760 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (732)
Q Consensus 454 ~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 533 (732)
+.||.+.+++|+..+.++.++
T Consensus 210 ~~k~~~~~i~~~~~~~~~~~~----------------------------------------------------------- 230 (374)
T cd03801 210 PRKGVDLLLEALAKLRKEYPD----------------------------------------------------------- 230 (374)
T ss_pred hhcCHHHHHHHHHHHhhhcCC-----------------------------------------------------------
Confidence 999999999999998766544
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccc
Q 004760 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (732)
Q Consensus 534 ~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~ 613 (732)
.+++++|.++....++.++ +.++..++|.|+|+
T Consensus 231 --------------------------~~l~i~G~~~~~~~~~~~~---------------------~~~~~~~~v~~~g~ 263 (374)
T cd03801 231 --------------------------VRLVIVGDGPLREELEALA---------------------AELGLGDRVTFLGF 263 (374)
T ss_pred --------------------------eEEEEEeCcHHHHHHHHHH---------------------HHhCCCcceEEEec
Confidence 3567777766555555443 22367789999998
Q ss_pred h--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHh
Q 004760 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (732)
Q Consensus 614 ~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL 691 (732)
. +++..+|+.||++++|+. .|++|++++|||++|+|||+++.++..|+++++.+|+++++.|+ ++++++|.+++
T Consensus 264 ~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~i~~~~ 339 (374)
T cd03801 264 VPDEDLPALYAAADVFVLPSL--YEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDP--EALAEAILRLL 339 (374)
T ss_pred cChhhHHHHHHhcCEEEecch--hccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCH--HHHHHHHHHHH
Confidence 8 899999999999999998 79999999999999999999999999999998899999999887 99999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 692 KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 692 ~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
.+++.+++|++++++.+.+.|+|+.+++++.++|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 340 DDPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 99999999999999889899999999999999873
No 42
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=2.8e-29 Score=280.62 Aligned_cols=357 Identities=14% Similarity=0.157 Sum_probs=243.2
Q ss_pred eEEEEeCCC----CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhH--------------------------HHhC
Q 004760 244 KFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE--------------------------LARR 293 (732)
Q Consensus 244 kIllI~h~l----s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~e--------------------------l~~~ 293 (732)
||++|+.|. ..||...++-.|+++|++.||+|.|+++.-.. .... ....
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGR-ILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcc-hhhHhccCeEEEEEEeeccCCceeEEEEEEEEeC
Confidence 689999886 46999999999999999999999999954322 2111 0124
Q ss_pred CcEEEEcCCCch------------------------------hhh--hcCccEEEeCCchhhHHHHHHHHhhc----CCC
Q 004760 294 KIKVLEDRGEPS------------------------------FKT--SMKADLVIAGSAVCATWIDQYITRFP----AGG 337 (732)
Q Consensus 294 gI~v~~~~~~~~------------------------------~~~--~~k~DlVia~Sav~~~~i~~~i~~~~----~~~ 337 (732)
|++++..+.... +.. ..+||+||+|...+ ..+..++.... ...
T Consensus 80 gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t-~~~~~~l~~~~~~~~~~~ 158 (476)
T cd03791 80 GVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHT-GLVPALLKEKYADPFFKN 158 (476)
T ss_pred CceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHH-HHHHHHHHHhhccccCCC
Confidence 677765433220 111 37999999997543 23333443332 123
Q ss_pred ccEEEEEeechh------HhH----------------------HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccC
Q 004760 338 SQVVWWIMENRR------EYF----------------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRS 389 (732)
Q Consensus 338 ~~ivw~i~e~r~------~~~----------------------~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~ 389 (732)
.++++.+|.... ..+ ...+..+...+.++++|+...+. .....-..+.
T Consensus 159 ~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~----i~~~~~~~gl 234 (476)
T cd03791 159 IKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYARE----ILTPEFGEGL 234 (476)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHH----hCCCCCCcch
Confidence 558888875311 000 01122344578888888875332 1000000000
Q ss_pred CCccccccCCCccceEEeecCCCCCCCCCchhhHH-----------HhHHhHHHHHHHhCCC--CCCEEEEEEecCCCCC
Q 004760 390 QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMRE-----------KRNLLRDSVRKEMGLT--DQDMLVLSLSSINPGK 456 (732)
Q Consensus 390 ~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~e-----------kr~~~r~~~R~~lgl~--~~~~lil~vGri~~~K 456 (732)
.. +.+ .....+.+|+||+|.+.|.|..... .+...+..+++++|++ ++.++|+++||+.+.|
T Consensus 235 ~~-~~~----~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~K 309 (476)
T cd03791 235 DG-LLR----ARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQK 309 (476)
T ss_pred HH-HHH----hccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccc
Confidence 00 000 0012458999999999988753211 1122456789999995 6788999999999999
Q ss_pred CHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccC
Q 004760 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (732)
Q Consensus 457 G~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~ 536 (732)
|++.+++|+..+.++.
T Consensus 310 g~~~li~a~~~l~~~~---------------------------------------------------------------- 325 (476)
T cd03791 310 GIDLLLEALPELLELG---------------------------------------------------------------- 325 (476)
T ss_pred cHHHHHHHHHHHHHcC----------------------------------------------------------------
Confidence 9999999999886432
Q ss_pred CCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEc-cch-
Q 004760 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT-PAT- 614 (732)
Q Consensus 537 ~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~-G~~- 614 (732)
.+++++|.|+.. ++ +.+ +.+.+.+ .+++.+. ++.
T Consensus 326 -----------------------~~lvi~G~g~~~--~~----------------~~~-~~~~~~~--~~~v~~~~~~~~ 361 (476)
T cd03791 326 -----------------------GQLVILGSGDPE--YE----------------EAL-RELAARY--PGRVAVLIGYDE 361 (476)
T ss_pred -----------------------cEEEEEecCCHH--HH----------------HHH-HHHHHhC--CCcEEEEEeCCH
Confidence 246777877421 11 111 1222221 4566654 554
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCc------eEEEECCCCCcHHHHHHHHH
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNV------TGLLHPPGHPGAQVLAQNLR 688 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~------~Gll~~~~d~~~e~La~aL~ 688 (732)
+.+..+|++||++++||. .|+||++++|||+||+|||+++.||+.|+|.++. +|+++++.|+ ++|+++|.
T Consensus 362 ~~~~~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~--~~l~~~i~ 437 (476)
T cd03791 362 ALAHLIYAGADFFLMPSR--FEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNA--DALLAALR 437 (476)
T ss_pred HHHHHHHHhCCEEECCCC--CCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCH--HHHHHHHH
Confidence 456789999999999998 9999999999999999999999999999999887 9999999988 99999999
Q ss_pred HHhc---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 689 YLLK---NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 689 ~LL~---n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
++++ +++.+.+|++++.+ ..|+|+.++++|.++|+
T Consensus 438 ~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 438 RALALYRDPEAWRKLQRNAMA---QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHcCHHHHHHHHHHHhc---cCCChHHHHHHHHHHHh
Confidence 8875 67777777777654 57999999999999986
No 43
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=1.3e-28 Score=256.63 Aligned_cols=339 Identities=23% Similarity=0.281 Sum_probs=245.8
Q ss_pred eEEEEeCCCCC--CcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhH------HHhCCcEEEEcCCCch----------
Q 004760 244 KFILIFHELSM--TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE------LARRKIKVLEDRGEPS---------- 305 (732)
Q Consensus 244 kIllI~h~ls~--gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~e------l~~~gI~v~~~~~~~~---------- 305 (732)
||++|++.... ||++..+.++|++|.++||+|.+++.......... ....+++++.......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHH
Confidence 68999998866 89999999999999999999999995543332211 1235666654432211
Q ss_pred -----------hh--hhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH----------------hHH-Hh
Q 004760 306 -----------FK--TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE----------------YFD-RA 355 (732)
Q Consensus 306 -----------~~--~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~----------------~~~-~~ 355 (732)
.. ...+||+||+++......+.........+. ++++++|..... +.. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~-~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGA-PFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLE 159 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCC-CEEEEehhhcchhHHHccCccccchHHHHHHHHH
Confidence 11 267899999997322222323222222233 466666532110 111 12
Q ss_pred hhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHH
Q 004760 356 KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRK 435 (732)
Q Consensus 356 ~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~ 435 (732)
+..+...+.++++|+..... +. ..+.. ...+.++|||++...+.+..... . +.
T Consensus 160 ~~~~~~~d~vi~~s~~~~~~----~~----~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~-------~-~~ 212 (394)
T cd03794 160 RLIYRRADAIVVISPGMREY----LV----RRGVP-----------PEKISVIPNGVDLELFKPPPADE-------S-LR 212 (394)
T ss_pred HHHHhcCCEEEEECHHHHHH----HH----hcCCC-----------cCceEEcCCCCCHHHcCCccchh-------h-hh
Confidence 23445688999999886442 21 11211 12358999999988776544311 1 34
Q ss_pred HhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcc
Q 004760 436 EMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (732)
Q Consensus 436 ~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~ 515 (732)
......+.+.|+++|++.+.||++.+++|+..+.+. ++
T Consensus 213 ~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~----------------------------------------- 250 (394)
T cd03794 213 KELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PD----------------------------------------- 250 (394)
T ss_pred hccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CC-----------------------------------------
Confidence 455566778999999999999999999999988655 33
Q ss_pred cccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHH
Q 004760 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (732)
Q Consensus 516 ~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il 595 (732)
.+++++|.|+....++.++..
T Consensus 251 --------------------------------------------~~l~i~G~~~~~~~~~~~~~~--------------- 271 (394)
T cd03794 251 --------------------------------------------IRFLIVGDGPEKEELKELAKA--------------- 271 (394)
T ss_pred --------------------------------------------eEEEEeCCcccHHHHHHHHHH---------------
Confidence 357778888766555544321
Q ss_pred HHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCC-----cHHHHHHHHcCCCEEEcCCCChhhhhccCc
Q 004760 596 EFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETF-----GRVTIEAMAFGVPVLGTDAGGTKEIVEHNV 668 (732)
Q Consensus 596 ~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egf-----g~vilEAMA~GlPVI~td~gG~~EiVe~g~ 668 (732)
.++ ++|.|+|.. +++..+|+.||++++||. .|++ |++++|||+||+|||+++.++..+++.++.
T Consensus 272 ------~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~ 342 (394)
T cd03794 272 ------LGL-DNVTFLGRVPKEELPELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAG 342 (394)
T ss_pred ------cCC-CcEEEeCCCChHHHHHHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCC
Confidence 133 579999966 689999999999999998 6654 889999999999999999999999999888
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 669 TGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLS 722 (732)
Q Consensus 669 ~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ 722 (732)
+|++++++|. ++++++|.+++.|++.+++|++++++.+.+.|+|+.++++|+
T Consensus 343 ~g~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 343 AGLVVPPGDP--EALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred cceEeCCCCH--HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhcC
Confidence 9999999887 999999999999999999999999999998999999998863
No 44
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=9.3e-29 Score=260.25 Aligned_cols=331 Identities=24% Similarity=0.314 Sum_probs=238.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh--hHHHhCCcEEEEcCCCch-------hh---hhcC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM--PELARRKIKVLEDRGEPS-------FK---TSMK 311 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~--~el~~~gI~v~~~~~~~~-------~~---~~~k 311 (732)
||+++++.+..+ ++..+.+++..|.++||+|.++++....... ......+..+........ +. ...+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 688888887544 8999999999999999999999976543211 111111111110000000 11 2579
Q ss_pred ccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech--h-HhHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhc-
Q 004760 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR--R-EYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL- 387 (732)
Q Consensus 312 ~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r--~-~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l- 387 (732)
+|+||+++........ .+.+...+.+ .++.+|... . ......+..+...+.+++.|+..... + .+.
T Consensus 80 ~Dii~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~----l----~~~~ 149 (355)
T cd03799 80 IDHIHAHFGTTPATVA-MLASRLGGIP-YSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQ----L----IRLL 149 (355)
T ss_pred CCEEEECCCCchHHHH-HHHHHhcCCC-EEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHH----H----HHhc
Confidence 9999998765433332 2333333333 444443211 1 11012334556688899999986442 2 111
Q ss_pred cCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHH
Q 004760 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (732)
Q Consensus 388 ~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~ 467 (732)
+... ..+.+||||+|.+.+.+... ....+.+.|+++|++.+.||++.+++++..
T Consensus 150 ~~~~-----------~~~~vi~~~~d~~~~~~~~~---------------~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~ 203 (355)
T cd03799 150 GCDP-----------DKIHVVHCGVDLERFPPRPP---------------PPPGEPLRILSVGRLVEKKGLDYLLEALAL 203 (355)
T ss_pred CCCc-----------ccEEEEeCCcCHHHcCCccc---------------cccCCCeEEEEEeeeccccCHHHHHHHHHH
Confidence 1111 23589999999887765430 123456789999999999999999999999
Q ss_pred hHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCC
Q 004760 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (732)
Q Consensus 468 l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~ 547 (732)
+.++.++
T Consensus 204 l~~~~~~------------------------------------------------------------------------- 210 (355)
T cd03799 204 LKDRGID------------------------------------------------------------------------- 210 (355)
T ss_pred HhhcCCC-------------------------------------------------------------------------
Confidence 8765443
Q ss_pred CCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcC
Q 004760 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAAD 625 (732)
Q Consensus 548 ~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaAD 625 (732)
.++.++|.|+....++..+. .+++.++|.|+|+. +++..+|+.||
T Consensus 211 ------------~~l~i~G~~~~~~~~~~~~~---------------------~~~~~~~v~~~g~~~~~~l~~~~~~ad 257 (355)
T cd03799 211 ------------FRLDIVGDGPLRDELEALIA---------------------ELGLEDRVTLLGAKSQEEVRELLRAAD 257 (355)
T ss_pred ------------eEEEEEECCccHHHHHHHHH---------------------HcCCCCeEEECCcCChHHHHHHHHhCC
Confidence 35677788876665555443 23677899999987 78999999999
Q ss_pred EEEEccCCCC------CCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHH
Q 004760 626 VYVINSQGLG------ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRER 699 (732)
Q Consensus 626 v~V~pS~~~~------Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~ 699 (732)
++++||. . |+||++++|||+||+|||+++.++..|+++++.+|++++++|. ++++++|..++++++.+.+
T Consensus 258 i~l~~s~--~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~--~~l~~~i~~~~~~~~~~~~ 333 (355)
T cd03799 258 LFVLPSV--TAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDP--EALADAIERLLDDPELRRE 333 (355)
T ss_pred EEEecce--ecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCH--HHHHHHHHHHHhCHHHHHH
Confidence 9999998 6 9999999999999999999999999999999889999998887 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 004760 700 MAMEGRKKVERMYLKKHMYKKL 721 (732)
Q Consensus 700 m~~~~r~~v~~~ys~~~~~~~~ 721 (732)
|++++++.+++.|+|+.+++++
T Consensus 334 ~~~~a~~~~~~~~s~~~~~~~l 355 (355)
T cd03799 334 MGEAGRARVEEEFDIRKQAARL 355 (355)
T ss_pred HHHHHHHHHHHhcCHHHHhhcC
Confidence 9999999999999999998753
No 45
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=7.5e-28 Score=250.90 Aligned_cols=338 Identities=22% Similarity=0.331 Sum_probs=242.3
Q ss_pred eEEEEeCCC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEc--CCCc-------------hh
Q 004760 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED--RGEP-------------SF 306 (732)
Q Consensus 244 kIllI~h~l--s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~--~~~~-------------~~ 306 (732)
||+++++.. ..||++..+.++|++|.+.||+|.+++.......... ...++..... .... ..
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE-EVVVVRPFRVPTFKYPDFRLPLPIPRALIII 79 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc-ccccccccccccchhhhhhccccHHHHHHHH
Confidence 688888776 5789999999999999999999999995543322111 1111111110 0000 02
Q ss_pred hhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhH----------------HHhhhhhccccEEEEecH
Q 004760 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYF----------------DRAKLVLDRVKLLVFLSE 370 (732)
Q Consensus 307 ~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~----------------~~~~~~l~r~~~li~vS~ 370 (732)
....+||+|++++.....+....+. ...+.+ +++++|..-..+. ...+..+..++.+++.|+
T Consensus 80 ~~~~~~Div~~~~~~~~~~~~~~~~-~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 80 LKELGPDIVHTHTPFSLGLLGLRVA-RKLGIP-VVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred HhhcCCCEEEECCchhhhhHHHHHH-HHcCCC-EEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 3467999999987644333222222 222333 5555553222111 111233445788888888
Q ss_pred HhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEe
Q 004760 371 SQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLS 450 (732)
Q Consensus 371 ~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vG 450 (732)
..... + ...+.. ..+.++|||+|...+.+... ...++.++++.+.+.|+++|
T Consensus 158 ~~~~~----~----~~~~~~------------~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G 209 (374)
T cd03817 158 KIADL----L----REYGVK------------RPIEVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVG 209 (374)
T ss_pred HHHHH----H----HhcCCC------------CceEEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEe
Confidence 75332 2 111211 12589999999988876543 22367778888888999999
Q ss_pred cCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCC
Q 004760 451 SINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (732)
Q Consensus 451 ri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (732)
++.+.||++.+++++..+.++.++
T Consensus 210 ~~~~~k~~~~l~~~~~~~~~~~~~-------------------------------------------------------- 233 (374)
T cd03817 210 RLAKEKNIDFLIRAFARLLKEEPD-------------------------------------------------------- 233 (374)
T ss_pred eeecccCHHHHHHHHHHHHHhCCC--------------------------------------------------------
Confidence 999999999999999998766443
Q ss_pred cccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEE
Q 004760 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW 610 (732)
Q Consensus 531 P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f 610 (732)
.+++++|+|+....++.++ +.+++.++|.|
T Consensus 234 -----------------------------~~l~i~G~~~~~~~~~~~~---------------------~~~~~~~~v~~ 263 (374)
T cd03817 234 -----------------------------VKLVIVGDGPEREELEELA---------------------RELGLADRVIF 263 (374)
T ss_pred -----------------------------eEEEEEeCCchHHHHHHHH---------------------HHcCCCCcEEE
Confidence 3577788876655554444 22377789999
Q ss_pred ccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHH
Q 004760 611 TPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (732)
Q Consensus 611 ~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~ 688 (732)
+|+. +++..+|+.||++++||. .|++|++++|||+||+|||+++.++..|+++++.+|+++++.+. +++++|.
T Consensus 264 ~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~---~~~~~i~ 338 (374)
T cd03817 264 TGFVPREELPDYYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDE---ALAEALL 338 (374)
T ss_pred eccCChHHHHHHHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCCH---HHHHHHH
Confidence 9976 789999999999999998 99999999999999999999999999999999999999987763 8999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 689 YLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 689 ~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
.++++++.+++|++++++.+++.+ +.+++.++|++
T Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 373 (374)
T cd03817 339 RLLQDPELRRRLSKNAEESAEKFS----FAKKVEKLYEE 373 (374)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc
Confidence 999999999999999999998744 66777777664
No 46
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=5.4e-28 Score=283.64 Aligned_cols=412 Identities=16% Similarity=0.188 Sum_probs=256.4
Q ss_pred CCcchhhhcccCc-----ccccccccccchhhhhccCCeEEEEeCCCC-----------CCcHHHHHHHHHHH-------
Q 004760 211 FGLTEDRILEWSP-----EKRSGTCDRKGDFARFVWSRKFILIFHELS-----------MTGAPLSMMELATE------- 267 (732)
Q Consensus 211 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~kIllI~h~ls-----------~gGA~~~~~eLA~~------- 267 (732)
+|.+-.|++|.=- -+....|.=..=+.|.=|..+|++|+-..+ .||--+++.+||++
T Consensus 219 wg~~~~~~~~~~~~l~~~~~~p~~~~~e~f~~~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~ 298 (784)
T TIGR02470 219 WGDTAQRVLETLHLLDDLLEAPDPSVLEAFLGRIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQ 298 (784)
T ss_pred cCccHHHHHHHHHHHHHHHhCCChhHHHHHHhhCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHH
Confidence 5666666655321 111223333444566677899999887763 47778899999997
Q ss_pred -HHHCCC----EEEEEEeCCCC--C--ChhHHH----hCCcEEEEcCCCc----------h------------------h
Q 004760 268 -LLSCGA----TVSAVVLSKRG--G--LMPELA----RRKIKVLEDRGEP----------S------------------F 306 (732)
Q Consensus 268 -L~~~G~----~V~vv~l~~~g--~--l~~el~----~~gI~v~~~~~~~----------~------------------~ 306 (732)
|+++|| +|.|+|-.... + ..+.++ ..++.|+..++.. + +
T Consensus 299 ~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~ 378 (784)
T TIGR02470 299 RIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEI 378 (784)
T ss_pred HHHhcCCCccceEEEEecCCCCccccccccccccccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 568999 66687732221 1 111111 2466666544222 1 1
Q ss_pred hh--hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEe-----------------echhHhHHH---hhhhhccccE
Q 004760 307 KT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIM-----------------ENRREYFDR---AKLVLDRVKL 364 (732)
Q Consensus 307 ~~--~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~-----------------e~r~~~~~~---~~~~l~r~~~ 364 (732)
.. ..+||+||+|-...+ +. +.+.....+.+.+. ..| +.+..+..+ -...++.++.
T Consensus 379 ~~~~~~~pDlIHahy~d~g-lv-a~lla~~lgVP~v~-t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~ 455 (784)
T TIGR02470 379 LAELQGKPDLIIGNYSDGN-LV-ASLLARKLGVTQCT-IAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADF 455 (784)
T ss_pred HHhcCCCCCEEEECCCchH-HH-HHHHHHhcCCCEEE-ECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCE
Confidence 11 247999999853221 11 22223333444322 122 111111111 1234555888
Q ss_pred EEEecHHhHHHhhhH---HHhhhhhccCCCccccc--cCCCccceEEeecCCCCCCCCCchhhHHHhH--H---------
Q 004760 365 LVFLSESQTKQWLTW---CEEEKLKLRSQPAVVPL--SVNDELAFVAGFTCSLNTPTSSPEKMREKRN--L--------- 428 (732)
Q Consensus 365 li~vS~~~~~~~~~~---~~~e~i~l~~~~~~v~l--~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~--~--------- 428 (732)
+++.+......-... +++. ..+.. |.+..+ |.+.....+.+||+|+|...|.|....+++. +
T Consensus 456 IItsT~qEi~~~~~~v~qY~s~-~~ft~-p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~ 533 (784)
T TIGR02470 456 IITSTYQEIAGTKDSVGQYESH-QAFTM-PGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLF 533 (784)
T ss_pred EEECcHHHhhhhhhhhhhhhhc-ccccc-cceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhcc
Confidence 998886431100000 1000 00010 111111 1111123568999999999887754432211 0
Q ss_pred hHHHHHHHhCC--CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhcccccccccccccccccccccccc
Q 004760 429 LRDSVRKEMGL--TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQ 506 (732)
Q Consensus 429 ~r~~~R~~lgl--~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~ 506 (732)
.+...++.+|+ +.+.++|+++||+.+.||++.|++|+..+....+.
T Consensus 534 ~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~-------------------------------- 581 (784)
T TIGR02470 534 SLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLREL-------------------------------- 581 (784)
T ss_pred chhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCC--------------------------------
Confidence 01233567786 45678999999999999999999999876432211
Q ss_pred ccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCC
Q 004760 507 MSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN 586 (732)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~ 586 (732)
.+|+++|.+.....- ...+
T Consensus 582 -----------------------------------------------------~~LVIVGGg~~~~~s--------~d~e 600 (784)
T TIGR02470 582 -----------------------------------------------------VNLVVVAGKLDAKES--------KDRE 600 (784)
T ss_pred -----------------------------------------------------eEEEEEeCCcccccc--------cchh
Confidence 246666765321000 0000
Q ss_pred ChhhHHHHHHHHHhcCCCCCcEEEccch---hhHHHHHH----HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC
Q 004760 587 KVPYVKEILEFLSQHSNLSKAMLWTPAT---TRVASLYS----AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (732)
Q Consensus 587 ~~~y~k~il~~l~~~l~l~~~V~f~G~~---~dv~~lys----aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG 659 (732)
+..+++++.+. .+.+++.++|.|+|++ .+..++|+ ++|+||+||. +|+||++++||||||+|||+|+.||
T Consensus 601 e~~~i~~L~~l-a~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG 677 (784)
T TIGR02470 601 EQAEIEKMHNL-IDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGG 677 (784)
T ss_pred HHHHHHHHHHH-HHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCC
Confidence 11233444443 3455999999999974 35555654 3579999997 9999999999999999999999999
Q ss_pred hhhhhccCceEEEECCCCCcHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 660 TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL----KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 660 ~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL----~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
+.|+|.++.+|+++++.|+ ++++++|..++ .|++.+++|+++|++.+.++|+|+.++++++++.
T Consensus 678 ~~EiV~dg~tGfLVdp~D~--eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 678 PLEIIQDGVSGFHIDPYHG--EEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHhcCCCcEEEeCCCCH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999998 99999999875 6999999999999999999999999999998875
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=8.2e-28 Score=250.34 Aligned_cols=327 Identities=18% Similarity=0.194 Sum_probs=230.0
Q ss_pred eEEEEeCCCC---CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcC-----C-------------
Q 004760 244 KFILIFHELS---MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDR-----G------------- 302 (732)
Q Consensus 244 kIllI~h~ls---~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~-----~------------- 302 (732)
||++|+|... .||++..+.+||++|.+.||+|.+++...... ..........+.... .
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPP-RQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDY 79 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCC-CcccccccceeeccccccccCCCchhhhhHHHhc
Confidence 6889988874 47999999999999999999999999544322 222222222222210 0
Q ss_pred -C----c---hhhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHH
Q 004760 303 -E----P---SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTK 374 (732)
Q Consensus 303 -~----~---~~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~ 374 (732)
. . .+....+||+||+++........ +......+. +++..+|...... ..........+.++++|+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~-~~~~~~~~~-~~i~~~hd~~~~~-~~~~~~~~~~d~ii~~s~~~~~ 156 (359)
T cd03823 80 DNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSI-LRAARDRGI-PIVLTLHDYWLIC-PRQGLFKKGGDAVIAPSRFLLD 156 (359)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCccchHHHH-HHHHHhcCC-CEEEEEeeeeeec-chhhhhccCCCEEEEeCHHHHH
Confidence 0 0 02336799999998753222111 111122233 3555554321100 0111112224778999987644
Q ss_pred HhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCC
Q 004760 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (732)
Q Consensus 375 ~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~ 454 (732)
. + ...+..+ ..+.+||||+|.+.+.+... +.+++.+.|+++|++.+
T Consensus 157 ~----~----~~~~~~~-----------~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~ 202 (359)
T cd03823 157 R----Y----VANGLFA-----------EKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTP 202 (359)
T ss_pred H----H----HHcCCCc-----------cceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCcc
Confidence 2 2 1111111 23589999999988754321 23466788999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccc
Q 004760 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (732)
Q Consensus 455 ~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 534 (732)
.||++.+++++..+.+ ++
T Consensus 203 ~k~~~~li~~~~~l~~--~~------------------------------------------------------------ 220 (359)
T cd03823 203 HKGVDLLLEAFKRLPR--GD------------------------------------------------------------ 220 (359)
T ss_pred ccCHHHHHHHHHHHHh--cC------------------------------------------------------------
Confidence 9999999999998865 33
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch
Q 004760 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (732)
Q Consensus 535 n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~ 614 (732)
.+++++|.++......... +..++|.++|+.
T Consensus 221 -------------------------~~l~i~G~~~~~~~~~~~~------------------------~~~~~v~~~g~~ 251 (359)
T cd03823 221 -------------------------IELVIVGNGLELEEESYEL------------------------EGDPRVEFLGAY 251 (359)
T ss_pred -------------------------cEEEEEcCchhhhHHHHhh------------------------cCCCeEEEeCCC
Confidence 2466677765443332211 345789999987
Q ss_pred --hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 615 --TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 615 --~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
+++.++|+.||++++||.. .|++|++++|||+||+|||+|+.++..|++.++.+|++++++|. ++++++|..+++
T Consensus 252 ~~~~~~~~~~~ad~~i~ps~~-~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~--~~l~~~i~~l~~ 328 (359)
T cd03823 252 PQEEIDDFYAEIDVLVVPSIW-PENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDA--EDLAAALERLID 328 (359)
T ss_pred CHHHHHHHHHhCCEEEEcCcc-cCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCH--HHHHHHHHHHHh
Confidence 8999999999999999973 79999999999999999999999999999999889999999887 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 693 NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 693 n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
|++.++.|++++++.... +.+++++.++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 358 (359)
T cd03823 329 DPDLLERLRAGIEPPRSI----EDQAEEYLKLYR 358 (359)
T ss_pred ChHHHHHHHHhHHHhhhH----HHHHHHHHHHhh
Confidence 999999999998876643 899999999885
No 48
>PRK14098 glycogen synthase; Provisional
Probab=99.97 E-value=6.3e-28 Score=273.52 Aligned_cols=362 Identities=16% Similarity=0.180 Sum_probs=246.3
Q ss_pred CeEEEEeCCCC----CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhH---H-------------------------
Q 004760 243 RKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---L------------------------- 290 (732)
Q Consensus 243 ~kIllI~h~ls----~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~e---l------------------------- 290 (732)
.||++|+.|.. .||-.=++-.|.++|+++||+|.||.+.- +.+... +
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY-GTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC-CchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 78999999984 78999999999999999999999998532 221110 0
Q ss_pred --HhCCcEEEEcC-----------C---------Cch------------hhh--hcCccEEEeCCchhhHHHHHHHHhhc
Q 004760 291 --ARRKIKVLEDR-----------G---------EPS------------FKT--SMKADLVIAGSAVCATWIDQYITRFP 334 (732)
Q Consensus 291 --~~~gI~v~~~~-----------~---------~~~------------~~~--~~k~DlVia~Sav~~~~i~~~i~~~~ 334 (732)
...+++++... . +.. +.. ..+||+||+|... +.++..++....
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~-t~l~~~~l~~~~ 163 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWY-AGLVPLLLKTVY 163 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcH-HHHHHHHHHHHh
Confidence 00123332111 0 000 111 3589999999733 344555553322
Q ss_pred -----CCCccEEEEEeechh---------------HhHH----------HhhhhhccccEEEEecHHhHHHhhhHHHhhh
Q 004760 335 -----AGGSQVVWWIMENRR---------------EYFD----------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEK 384 (732)
Q Consensus 335 -----~~~~~ivw~i~e~r~---------------~~~~----------~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~ 384 (732)
....+.+..+|.... .++. ..+..+...+.++++|+...+. +.....
T Consensus 164 ~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~e---i~~~~~ 240 (489)
T PRK14098 164 ADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEE---IAGDGE 240 (489)
T ss_pred hhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHH---hCcCCC
Confidence 112457777774221 0000 0122334578899999886432 110000
Q ss_pred hhccCCCccccccCCCccceEEeecCCCCCCCCCchhhH-----------HHhHHhHHHHHHHhCCCC--CCEEEEEEec
Q 004760 385 LKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSS 451 (732)
Q Consensus 385 i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~-----------ekr~~~r~~~R~~lgl~~--~~~lil~vGr 451 (732)
...+... + +. .....+.+|+||+|++.|.|.... +.+...+..+++++|++. +.++|+++||
T Consensus 241 ~~~gl~~-~--l~--~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgR 315 (489)
T PRK14098 241 EAFGLDK-V--LE--ERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIIN 315 (489)
T ss_pred CCcChHH-H--HH--hcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEecc
Confidence 0001100 0 00 001245899999999988875321 011224567899999974 4679999999
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCc
Q 004760 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (732)
Q Consensus 452 i~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P 531 (732)
+.++||++++++|+..+.+. +
T Consensus 316 l~~~KG~d~li~a~~~l~~~--~--------------------------------------------------------- 336 (489)
T PRK14098 316 FDDFQGAELLAESLEKLVEL--D--------------------------------------------------------- 336 (489)
T ss_pred ccccCcHHHHHHHHHHHHhc--C---------------------------------------------------------
Confidence 99999999999999988542 2
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEeccCchh--hhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEE
Q 004760 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ--QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML 609 (732)
Q Consensus 532 ~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~--~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~ 609 (732)
.+++++|.|+. .+.++.++ +. ++++|.
T Consensus 337 ----------------------------~~lvivG~G~~~~~~~l~~l~---------------------~~--~~~~V~ 365 (489)
T PRK14098 337 ----------------------------IQLVICGSGDKEYEKRFQDFA---------------------EE--HPEQVS 365 (489)
T ss_pred ----------------------------cEEEEEeCCCHHHHHHHHHHH---------------------HH--CCCCEE
Confidence 25778888753 23333332 22 246899
Q ss_pred Eccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc----CceEEEECCCCCcHHHH
Q 004760 610 WTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH----NVTGLLHPPGHPGAQVL 683 (732)
Q Consensus 610 f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~----g~~Gll~~~~d~~~e~L 683 (732)
|+|.. +++..+|++||++|+||. .|+||++.+|||+||+|+|+++.||+.|.|.+ +.+|+++++.|+ ++|
T Consensus 366 ~~g~~~~~~~~~~~a~aDi~l~PS~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~--~~l 441 (489)
T PRK14098 366 VQTEFTDAFFHLAIAGLDMLLMPGK--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTP--EAL 441 (489)
T ss_pred EEEecCHHHHHHHHHhCCEEEeCCC--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCH--HHH
Confidence 99865 457899999999999998 99999999999999999999999999998864 679999999988 999
Q ss_pred HHHHHHHh---cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 684 AQNLRYLL---KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 684 a~aL~~LL---~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
+++|.+++ +|++.+++|+.++. .+.|||+.++++|.++|++++.+
T Consensus 442 a~ai~~~l~~~~~~~~~~~~~~~~~---~~~fsw~~~a~~y~~lY~~~~~~ 489 (489)
T PRK14098 442 VAKLGEALALYHDEERWEELVLEAM---ERDFSWKNSAEEYAQLYRELLGP 489 (489)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHhcC
Confidence 99998754 68888888877664 46899999999999999998764
No 49
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=1.4e-27 Score=246.80 Aligned_cols=342 Identities=25% Similarity=0.381 Sum_probs=247.1
Q ss_pred EEEEeCCCCC---CcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC----------CcEEE-EcCCCc------
Q 004760 245 FILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----------KIKVL-EDRGEP------ 304 (732)
Q Consensus 245 IllI~h~ls~---gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~----------gI~v~-~~~~~~------ 304 (732)
||+|+|.... ||++..+.+++.+|.+.||+|.+++.............. ..... ......
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 5778888875 999999999999999999999999965543322111100 00000 000000
Q ss_pred ----hhhh--hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH-------hHHHhhhhhccccEEEEecHH
Q 004760 305 ----SFKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE-------YFDRAKLVLDRVKLLVFLSES 371 (732)
Q Consensus 305 ----~~~~--~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~-------~~~~~~~~l~r~~~li~vS~~ 371 (732)
.+.. ..+||+|+++......++...+.. ..+ .++++++|..... +....+..+.+++.++++|+.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~-~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 158 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR-KLG-IPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEA 158 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH-hcC-CCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHH
Confidence 0333 779999999854444333322222 222 2355666532211 111233455668899999988
Q ss_pred hHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEec
Q 004760 372 QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS 451 (732)
Q Consensus 372 ~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGr 451 (732)
.... + .+... + ...+.++|||+|...+.+..... . ..++...+.+.++++|+
T Consensus 159 ~~~~----~----~~~~~-~----------~~~~~~i~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~i~~~g~ 210 (377)
T cd03798 159 LADE----L----KALGI-D----------PEKVTVIPNGVDTERFSPADRAE-------A--RKLGLPEDKKVILFVGR 210 (377)
T ss_pred HHHH----H----HHhcC-C----------CCceEEcCCCcCcccCCCcchHH-------H--HhccCCCCceEEEEecc
Confidence 6443 2 11111 1 12348999999999887654311 1 34556677889999999
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCc
Q 004760 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (732)
Q Consensus 452 i~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P 531 (732)
+.+.||++.+++++..+.++.++
T Consensus 211 ~~~~k~~~~li~~~~~~~~~~~~--------------------------------------------------------- 233 (377)
T cd03798 211 LVPRKGIDYLIEALARLLKKRPD--------------------------------------------------------- 233 (377)
T ss_pred CccccCHHHHHHHHHHHHhcCCC---------------------------------------------------------
Confidence 99999999999999998765443
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEc
Q 004760 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT 611 (732)
Q Consensus 532 ~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~ 611 (732)
.++.++|.|+....++.++. .+++.++|.+.
T Consensus 234 ----------------------------~~l~i~g~~~~~~~~~~~~~---------------------~~~~~~~v~~~ 264 (377)
T cd03798 234 ----------------------------VHLVIVGDGPLREALEALAA---------------------ELGLEDRVTFL 264 (377)
T ss_pred ----------------------------eEEEEEcCCcchHHHHHHHH---------------------hcCCcceEEEe
Confidence 24666777765554444432 33677899999
Q ss_pred cch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHH
Q 004760 612 PAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (732)
Q Consensus 612 G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~ 689 (732)
|+. +++.++|+.||++++||. .|++|++++|||+||+|||+++.++..|++.++.+|+++++.|. ++++++|.+
T Consensus 265 g~~~~~~~~~~~~~ad~~i~~~~--~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~i~~ 340 (377)
T cd03798 265 GAVPHEEVPAYYAAADVFVLPSL--REGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDP--EALAEAILR 340 (377)
T ss_pred CCCCHHHHHHHHHhcCeeecchh--hccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCH--HHHHHHHHH
Confidence 976 679999999999999998 89999999999999999999999999999999999999999888 999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 690 LLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 690 LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
++++++. ++..++++.+.+.|+|+.+++++.++|+++
T Consensus 341 ~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 341 LLADPWL--RLGRAARRRVAERFSWENVAERLLELYREV 377 (377)
T ss_pred HhcCcHH--HHhHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9999887 788899999999999999999999999764
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=2.2e-27 Score=262.98 Aligned_cols=347 Identities=15% Similarity=0.125 Sum_probs=231.7
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--h---------------
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--S--------------- 305 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--~--------------- 305 (732)
+||++++ . .+.|++..+.++|++|++.||+|++++....+...+.....||.++...... .
T Consensus 4 ~~~~~~~-~-~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T cd03816 4 KRVCVLV-L-GDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVLW 81 (415)
T ss_pred cEEEEEE-e-cccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHHH
Confidence 3444443 3 4566666779999999999999999997655544343667899988876553 1
Q ss_pred --------hhhhcCccEEEeCCchh-hHHHHHHHHhhcCCCccEEEEEeechh--------------HhHHHh-hhhhcc
Q 004760 306 --------FKTSMKADLVIAGSAVC-ATWIDQYITRFPAGGSQVVWWIMENRR--------------EYFDRA-KLVLDR 361 (732)
Q Consensus 306 --------~~~~~k~DlVia~Sav~-~~~i~~~i~~~~~~~~~ivw~i~e~r~--------------~~~~~~-~~~l~r 361 (732)
+....+||+||+++... ..+...++.....+.+ ++..+|.... .++... +....+
T Consensus 82 ~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~-~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (415)
T cd03816 82 QFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTK-LIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRL 160 (415)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCe-EEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhc
Confidence 12245899999876332 1222233333334444 3333332110 011111 122344
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHH------
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRK------ 435 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~------ 435 (732)
.+.++++|+..... . .+.+..+ + .+.+|||| +...|.|....+.. ..+++
T Consensus 161 ad~ii~vS~~~~~~----l----~~~~~~~-------~----ki~vI~Ng-~~~~f~p~~~~~~~----~~~~~~~~~~~ 216 (415)
T cd03816 161 ADYNLCVTKAMKED----L----QQFNNWK-------I----RATVLYDR-PPEQFRPLPLEEKH----ELFLKLAKTFL 216 (415)
T ss_pred CCEeeecCHHHHHH----H----HhhhccC-------C----CeeecCCC-CHHHceeCcHHHHH----HHHHhcccccc
Confidence 89999999986442 1 1122222 2 34899999 44566554332211 11111
Q ss_pred -------HhCC-CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccc
Q 004760 436 -------EMGL-TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (732)
Q Consensus 436 -------~lgl-~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~ 507 (732)
..++ +++..+++++|++.+.||++.||+|+..+.+.....
T Consensus 217 ~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~-------------------------------- 264 (415)
T cd03816 217 TRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATG-------------------------------- 264 (415)
T ss_pred ccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccc--------------------------------
Confidence 1122 244567889999999999999999999986543210
Q ss_pred cccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCC
Q 004760 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNK 587 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~ 587 (732)
...+..+++++|+|+.++.++.++..
T Consensus 265 -----------------------------------------------~~~~~i~l~ivG~G~~~~~l~~~~~~------- 290 (415)
T cd03816 265 -----------------------------------------------PKLPKLLCIITGKGPLKEKYLERIKE------- 290 (415)
T ss_pred -----------------------------------------------ccCCCEEEEEEecCccHHHHHHHHHH-------
Confidence 00012468899999887777766643
Q ss_pred hhhHHHHHHHHHhcCCCCCcEEEccc--hhhHHHHHHHcCEEEEccCC-CCCCCcHHHHHHHHcCCCEEEcCCCChhhhh
Q 004760 588 VPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAADVYVINSQG-LGETFGRVTIEAMAFGVPVLGTDAGGTKEIV 664 (732)
Q Consensus 588 ~~y~k~il~~l~~~l~l~~~V~f~G~--~~dv~~lysaADv~V~pS~~-~~Egfg~vilEAMA~GlPVI~td~gG~~EiV 664 (732)
+++.+.+.+.|+ .++++.+|++||++|+++.. ..|++|++++||||||+|||+|+.||..|+|
T Consensus 291 --------------~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv 356 (415)
T cd03816 291 --------------LKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELV 356 (415)
T ss_pred --------------cCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHh
Confidence 367655556675 48999999999999975321 2578999999999999999999999999999
Q ss_pred ccCceEEEECCCCCcHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 665 EHNVTGLLHPPGHPGAQVLAQNLRYLLKN---PSVRERMAMEGRKKVERMYLKKHMYKKLS 722 (732)
Q Consensus 665 e~g~~Gll~~~~d~~~e~La~aL~~LL~n---~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ 722 (732)
+++.+|++++ |+ ++|+++|..+++| ++.+++|++++++..+ ++|++.+++.+
T Consensus 357 ~~~~~G~lv~--d~--~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~~~ 411 (415)
T cd03816 357 KHGENGLVFG--DS--EELAEQLIDLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDRVV 411 (415)
T ss_pred cCCCCEEEEC--CH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHHHh
Confidence 9999999984 55 9999999999999 9999999999998874 67776666543
No 51
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.96 E-value=1.4e-27 Score=250.27 Aligned_cols=333 Identities=20% Similarity=0.237 Sum_probs=233.6
Q ss_pred eEEEEeCCCCC---CcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEE----EcCCCch----------h
Q 004760 244 KFILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL----EDRGEPS----------F 306 (732)
Q Consensus 244 kIllI~h~ls~---gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~----~~~~~~~----------~ 306 (732)
||+++++.+.. ||++.++.+|+++|.+.|++|.+++................... ....... .
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 58888888865 99999999999999999999999997655433222111111100 0000000 2
Q ss_pred hhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh------------HhH-HHhhhhhccccEEEEecHHhH
Q 004760 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------------EYF-DRAKLVLDRVKLLVFLSESQT 373 (732)
Q Consensus 307 ~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~------------~~~-~~~~~~l~r~~~li~vS~~~~ 373 (732)
....+||+||+++...... ...+ .++++++|.... .++ ......+...+.++++|+...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~-------~~~~-~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 152 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL-------RLRG-VPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATK 152 (365)
T ss_pred hhhcCCCeeeecccccCcc-------cCCC-CCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHH
Confidence 2256899998887544322 1223 335555653210 111 112344555889999998864
Q ss_pred HHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCC
Q 004760 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (732)
Q Consensus 374 ~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~ 453 (732)
+.....+ +..+ ..+.++|||+|...+.+.... . +.......+.+.|+++|++.
T Consensus 153 ~~~~~~~-------~~~~-----------~~~~vi~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~i~~~G~~~ 205 (365)
T cd03809 153 RDLLRYL-------GVPP-----------DKIVVIPLGVDPRFRPPPAEA--------E-VLRALYLLPRPYFLYVGTIE 205 (365)
T ss_pred HHHHHHh-------CcCH-----------HHEEeeccccCccccCCCchH--------H-HHHHhcCCCCCeEEEeCCCc
Confidence 4311111 1111 235899999999888664421 1 33344456678899999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCccc
Q 004760 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (732)
Q Consensus 454 ~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 533 (732)
+.||++.+++++..+.++.+.
T Consensus 206 ~~K~~~~~l~~~~~~~~~~~~----------------------------------------------------------- 226 (365)
T cd03809 206 PRKNLERLLEAFARLPAKGPD----------------------------------------------------------- 226 (365)
T ss_pred cccCHHHHHHHHHHHHHhcCC-----------------------------------------------------------
Confidence 999999999999999776543
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccc
Q 004760 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (732)
Q Consensus 534 ~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~ 613 (732)
.+++++|.+...... ....+ +..+..++|+|+|+
T Consensus 227 --------------------------~~l~i~G~~~~~~~~-------------------~~~~~-~~~~~~~~v~~~g~ 260 (365)
T cd03809 227 --------------------------PKLVIVGKRGWLNEE-------------------LLARL-RELGLGDRVRFLGY 260 (365)
T ss_pred --------------------------CCEEEecCCccccHH-------------------HHHHH-HHcCCCCeEEECCC
Confidence 134455554321111 11111 23477889999998
Q ss_pred h--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHh
Q 004760 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (732)
Q Consensus 614 ~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL 691 (732)
. +++..+|++||++++||. .|++|++++|||++|+|||+++.|++.|++.+ +|++++++|. ++++++|..++
T Consensus 261 ~~~~~~~~~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~~~~~~~~--~~~~~~i~~l~ 334 (365)
T cd03809 261 VSDEELAALYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPEVAGD--AALYFDPLDP--EALAAAIERLL 334 (365)
T ss_pred CChhHHHHHHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCccceecC--ceeeeCCCCH--HHHHHHHHHHh
Confidence 7 789999999999999998 89999999999999999999999999999864 6888888887 99999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 692 KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 692 ~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~e 723 (732)
.|++.+.+|++++++.++ .|+|+.+++++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~-~~sw~~~~~~~~~ 365 (365)
T cd03809 335 EDPALREELRERGLARAK-RFSWEKTARRTLD 365 (365)
T ss_pred cCHHHHHHHHHHHHHHHH-hCCHHHHHHHHhC
Confidence 999999999999996554 6999999998863
No 52
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.96 E-value=3.8e-27 Score=261.84 Aligned_cols=337 Identities=13% Similarity=0.085 Sum_probs=226.5
Q ss_pred eEEEEeCCCCCC-cHHHHHHHHHHHHHHC--CCEEEEEEeCCCCCC----------hhHHHhCCcEEEEc--C-CC--ch
Q 004760 244 KFILIFHELSMT-GAPLSMMELATELLSC--GATVSAVVLSKRGGL----------MPELARRKIKVLED--R-GE--PS 305 (732)
Q Consensus 244 kIllI~h~ls~g-GA~~~~~eLA~~L~~~--G~~V~vv~l~~~g~l----------~~el~~~gI~v~~~--~-~~--~~ 305 (732)
.|.++.++++.| |||+++++.|.+|++. +++|.+++......- .++-...+++++.. . .. ..
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 467888889988 9999999999999998 788888884332211 01111345554443 1 10 00
Q ss_pred ------------------hhh--hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech---hHhHH---------
Q 004760 306 ------------------FKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---REYFD--------- 353 (732)
Q Consensus 306 ------------------~~~--~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r---~~~~~--------- 353 (732)
+.. ..+||++|.++....++.. .....+. +++.++|+.. .....
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~---~~~~~~~-~~i~y~h~P~~~~d~l~~~~~~~~~~~ 157 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPL---VRLLGGC-PVGAYVHYPTISTDMLQKVRSREASYN 157 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHH---HHHhcCC-eEEEEecCCcchHHHHHHHhhcccccc
Confidence 111 3579999888755444332 2222233 5777777441 11100
Q ss_pred ------------------------HhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeec
Q 004760 354 ------------------------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFT 409 (732)
Q Consensus 354 ------------------------~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIp 409 (732)
........++.+++.|+.+... . ...... . ..+.+||
T Consensus 158 ~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~----~-----~~~~~~-------~---~~~~vi~ 218 (419)
T cd03806 158 NSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNH----I-----RSLWKR-------N---TKPSIVY 218 (419)
T ss_pred CccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHH----H-----HHHhCc-------C---CCcEEEc
Confidence 0112234488899999987543 1 111111 0 1238999
Q ss_pred CCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccc
Q 004760 410 CSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (732)
Q Consensus 410 ngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~ 489 (732)
||+|++.|.+... ....+...|+++|++.+.||++.+|+|+..+.++.|..
T Consensus 219 ~gvd~~~~~~~~~---------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~-------------- 269 (419)
T cd03806 219 PPCDVEELLKLPL---------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE-------------- 269 (419)
T ss_pred CCCCHHHhccccc---------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc--------------
Confidence 9999887754321 01234578999999999999999999999998766541
Q ss_pred cccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCch
Q 004760 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (732)
Q Consensus 490 ~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~ 569 (732)
..+..+++++|+|.
T Consensus 270 ------------------------------------------------------------------~~~~~~lvivG~~~ 283 (419)
T cd03806 270 ------------------------------------------------------------------IKEKIKLVLIGSCR 283 (419)
T ss_pred ------------------------------------------------------------------ccCceEEEEEcCCC
Confidence 00124677888763
Q ss_pred hhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHH
Q 004760 570 QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMA 647 (732)
Q Consensus 570 ~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA 647 (732)
... +.++.+++ +.+.+.+++.++|+|+|.. +++..+|+.||++|+||. .|+||++++||||
T Consensus 284 ~~~--------------~~~~~~~L-~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa 346 (419)
T cd03806 284 NED--------------DEKRVEDL-KLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMA 346 (419)
T ss_pred Ccc--------------cHHHHHHH-HHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHH
Confidence 211 12233333 4444555899999999974 789999999999999998 8999999999999
Q ss_pred cCCCEEEcCCCCh-hhhhc---cCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 004760 648 FGVPVLGTDAGGT-KEIVE---HNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYK 719 (732)
Q Consensus 648 ~GlPVI~td~gG~-~EiVe---~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~ 719 (732)
||+|||+++.||. .|+++ ++.+|++++ |+ +++|++|.+++++++...++..++++.+.++|+++.+.+
T Consensus 347 ~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~--~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 347 AGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TA--EEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred cCCcEEEEcCCCCchheeeccCCCCceEEeC--CH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 9999999999774 57888 889999974 55 999999999999765444434555556777899998754
No 53
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=2e-27 Score=267.79 Aligned_cols=275 Identities=23% Similarity=0.327 Sum_probs=207.8
Q ss_pred cCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeec--hhH---h-----------------HHH-hhhhhccccEEE
Q 004760 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN--RRE---Y-----------------FDR-AKLVLDRVKLLV 366 (732)
Q Consensus 310 ~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~--r~~---~-----------------~~~-~~~~l~r~~~li 366 (732)
.++|+||+++...+.++.. +.....+.+ +++..|.. ++. + +.. .+..+..++.++
T Consensus 172 ~~~dviH~~s~~~~g~~~~-~~~~~~~~p-~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii 249 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGA-LAKARRGTP-FLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRIT 249 (475)
T ss_pred CCCCEEeccCcchHHHHHH-HHHHHhCCC-EEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4899999997644443333 333334445 55555531 110 0 000 122334588899
Q ss_pred EecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEE
Q 004760 367 FLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLV 446 (732)
Q Consensus 367 ~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~li 446 (732)
++|+..... . ...+..+ ..+.+||||+|...|.+.... ...++.++|
T Consensus 250 ~~s~~~~~~----~----~~~g~~~-----------~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i 296 (475)
T cd03813 250 TLYEGNRER----Q----IEDGADP-----------EKIRVIPNGIDPERFAPARRA--------------RPEKEPPVV 296 (475)
T ss_pred ecCHHHHHH----H----HHcCCCH-----------HHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEE
Confidence 998875331 2 2233322 234899999999988664320 123567789
Q ss_pred EEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhh
Q 004760 447 LSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFT 526 (732)
Q Consensus 447 l~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~ 526 (732)
+++|++.+.||++.+|+|++.+.++.|+
T Consensus 297 ~~vGrl~~~Kg~~~li~a~~~l~~~~p~---------------------------------------------------- 324 (475)
T cd03813 297 GLIGRVVPIKDIKTFIRAAAIVRKKIPD---------------------------------------------------- 324 (475)
T ss_pred EEEeccccccCHHHHHHHHHHHHHhCCC----------------------------------------------------
Confidence 9999999999999999999999877665
Q ss_pred ccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCC
Q 004760 527 QLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSK 606 (732)
Q Consensus 527 ~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~ 606 (732)
.+++++|.|+.. ..|.+++.+. .+.+++.+
T Consensus 325 ---------------------------------~~l~IvG~g~~~----------------~~~~~e~~~l-i~~l~l~~ 354 (475)
T cd03813 325 ---------------------------------AEGWVIGPTDED----------------PEYAEECREL-VESLGLED 354 (475)
T ss_pred ---------------------------------eEEEEECCCCcC----------------hHHHHHHHHH-HHHhCCCC
Confidence 246667766421 2233344333 34458999
Q ss_pred cEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc------CceEEEECCCCCcH
Q 004760 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH------NVTGLLHPPGHPGA 680 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~------g~~Gll~~~~d~~~ 680 (732)
+|.|+| .+++.++|++||++|+||. .|+||++++||||||+|||+|+.||+.|++++ |.+|++++++|+
T Consensus 355 ~V~f~G-~~~v~~~l~~aDv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~-- 429 (475)
T cd03813 355 NVKFTG-FQNVKEYLPKLDVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADP-- 429 (475)
T ss_pred eEEEcC-CccHHHHHHhCCEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCH--
Confidence 999999 7799999999999999998 99999999999999999999999999999998 569999999988
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 681 QVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
++++++|.++++|++.+++|++++++.+++.|+|++++++|.++|+
T Consensus 430 ~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 430 EALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999884
No 54
>PLN02949 transferase, transferring glycosyl groups
Probab=99.96 E-value=5.9e-27 Score=263.97 Aligned_cols=348 Identities=15% Similarity=0.155 Sum_probs=233.4
Q ss_pred cCCeEEEEeCCCCCC-cHHHHHHHHHHHHHHCCCEEEEEEeCCC---CC---ChhHHHhCCcEE------EEc-CC-C--
Q 004760 241 WSRKFILIFHELSMT-GAPLSMMELATELLSCGATVSAVVLSKR---GG---LMPELARRKIKV------LED-RG-E-- 303 (732)
Q Consensus 241 ~~~kIllI~h~ls~g-GA~~~~~eLA~~L~~~G~~V~vv~l~~~---g~---l~~el~~~gI~v------~~~-~~-~-- 303 (732)
.+++|.++-++++.| |||+++.+.+.+|+++|+++.|+..... .. +.....+.+|.+ +.+ .. .
T Consensus 32 ~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~~ 111 (463)
T PLN02949 32 RKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWIE 111 (463)
T ss_pred CCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccccc
Confidence 356888888888777 9999999999999999995555544422 11 111223444422 222 11 1
Q ss_pred ch------------------hh--hhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHh------------
Q 004760 304 PS------------------FK--TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY------------ 351 (732)
Q Consensus 304 ~~------------------~~--~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~------------ 351 (732)
.. +. ....|| |+..+.-.+.+++ +.+ .. ..++++++|+.-...
T Consensus 112 ~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~~~p--l~~-~~-~~~v~~yvH~p~~~~dm~~~v~~~~~~ 186 (463)
T PLN02949 112 EETYPRFTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAFTYP--LAR-LF-GCKVVCYTHYPTISSDMISRVRDRSSM 186 (463)
T ss_pred cccCCceehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCcccHHH--HHH-hc-CCcEEEEEeCCcchHHHHHHHhhcccc
Confidence 10 00 123455 5565543333333 222 22 356888888642110
Q ss_pred -------------------HHHh-----hhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEe
Q 004760 352 -------------------FDRA-----KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAG 407 (732)
Q Consensus 352 -------------------~~~~-----~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~v 407 (732)
+.+. .......+.+++.|+.+..... +....+ + .+.+
T Consensus 187 ~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~--------~~~~~~-------~----~i~v 247 (463)
T PLN02949 187 YNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIE--------ALWRIP-------E----RIKR 247 (463)
T ss_pred cCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHH--------HHcCCC-------C----CeEE
Confidence 0000 0111337888888888754311 111111 1 2478
Q ss_pred ecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccc
Q 004760 408 FTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVG 487 (732)
Q Consensus 408 Ipngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~ 487 (732)
+|+|+|++.+...+.. -+.+...++++|++.+.||++++|+|++.+.++.+..
T Consensus 248 vyp~vd~~~~~~~~~~---------------~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~------------ 300 (463)
T PLN02949 248 VYPPCDTSGLQALPLE---------------RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDAD------------ 300 (463)
T ss_pred EcCCCCHHHcccCCcc---------------ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhcccc------------
Confidence 9999998765322110 0133467899999999999999999999987643320
Q ss_pred cccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccC
Q 004760 488 RKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSD 567 (732)
Q Consensus 488 ~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~ 567 (732)
.+..+|+++|+
T Consensus 301 ---------------------------------------------------------------------~~~~~LvIvG~ 311 (463)
T PLN02949 301 ---------------------------------------------------------------------VPRPKLQFVGS 311 (463)
T ss_pred ---------------------------------------------------------------------CCCcEEEEEeC
Confidence 01246778887
Q ss_pred chhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHH
Q 004760 568 GKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEA 645 (732)
Q Consensus 568 G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEA 645 (732)
+... ++.++.+++.+. .+.+++.++|.|+|.. +++..+|+.||++|.||. .|+||++++||
T Consensus 312 ~~~~--------------~~~~~~~eL~~l-a~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEA 374 (463)
T PLN02949 312 CRNK--------------EDEERLQKLKDR-AKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEY 374 (463)
T ss_pred CCCc--------------ccHHHHHHHHHH-HHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHH
Confidence 6321 112333444433 3455899999999976 789999999999999997 99999999999
Q ss_pred HHcCCCEEEcCCCChh-hhhcc---CceEEEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 004760 646 MAFGVPVLGTDAGGTK-EIVEH---NVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKK 720 (732)
Q Consensus 646 MA~GlPVI~td~gG~~-EiVe~---g~~Gll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~ 720 (732)
||+|+|||+++.||.. |++.+ +.+|++++ |+ ++|+++|.++++ +++.+++|++++++.++ +|||+.++++
T Consensus 375 MA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~--~~la~ai~~ll~~~~~~r~~m~~~ar~~~~-~FS~e~~~~~ 449 (463)
T PLN02949 375 MAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TV--EEYADAILEVLRMRETERLEIAAAARKRAN-RFSEQRFNED 449 (463)
T ss_pred HHcCCcEEEeCCCCCcceeeecCCCCcccccCC--CH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HcCHHHHHHH
Confidence 9999999999998864 77764 57898874 55 999999999998 57889999999999995 5999999999
Q ss_pred HHHHHHHhhc
Q 004760 721 LSQVIYKCMK 730 (732)
Q Consensus 721 ~~ev~~~~l~ 730 (732)
+.+++.++++
T Consensus 450 ~~~~i~~l~~ 459 (463)
T PLN02949 450 FKDAIRPILN 459 (463)
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 55
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.96 E-value=1.3e-26 Score=253.92 Aligned_cols=332 Identities=15% Similarity=0.177 Sum_probs=223.6
Q ss_pred EEEEeCCCC---CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-Ch--hHHH--hCCcEEEEcCCCc------------
Q 004760 245 FILIFHELS---MTGAPLSMMELATELLSCGATVSAVVLSKRGG-LM--PELA--RRKIKVLEDRGEP------------ 304 (732)
Q Consensus 245 IllI~h~ls---~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~--~el~--~~gI~v~~~~~~~------------ 304 (732)
||+++|..- .+|..+.+++++++|++. |+|+++++..... .. +.++ -..+.++......
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTG 79 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCC
Confidence 577777763 467899999999999665 8999999875332 21 1221 1122332221110
Q ss_pred ---------h---------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech---------------hHh
Q 004760 305 ---------S---------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---------------REY 351 (732)
Q Consensus 305 ---------~---------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r---------------~~~ 351 (732)
+ +..+.++|+||+++...+.++ .....+.+ .++..|... ..+
T Consensus 80 ~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~----~~~~~~~p-~i~~~~d~~~~~~~~~~~~~~~~~~~~ 154 (397)
T TIGR03087 80 EPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYV----TPHVRGVP-RIVDFVDVDSDKWLQYARTKRWPLRWI 154 (397)
T ss_pred CCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceec----cccccCCC-eEeehhhHHHHHHHHHHhccCcchhHH
Confidence 0 122479999999875443322 11122333 222222100 000
Q ss_pred H--------HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhH
Q 004760 352 F--------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR 423 (732)
Q Consensus 352 ~--------~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ 423 (732)
+ ...+....+++.++++|+..... + .+..... ...+.+||||+|.+.|.+....
T Consensus 155 ~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~----l----~~~~~~~----------~~~v~vipngvd~~~f~~~~~~ 216 (397)
T TIGR03087 155 YRREGRLLLAYERAIAARFDAATFVSRAEAEL----F----RRLAPEA----------AGRITAFPNGVDADFFSPDRDY 216 (397)
T ss_pred HHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHH----H----HHhCCCC----------CCCeEEeecccchhhcCCCccc
Confidence 0 00123345589999999987443 2 1111111 1134899999999988764321
Q ss_pred HHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH----HHHHhHHhCCCCchhhhhhccccccccccccccccc
Q 004760 424 EKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE----SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHL 499 (732)
Q Consensus 424 ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLe----A~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l 499 (732)
. -.+..+..+|+|+|++.+.||++.++. ++..+.++.|+
T Consensus 217 ~------------~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~------------------------- 259 (397)
T TIGR03087 217 P------------NPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPA------------------------- 259 (397)
T ss_pred c------------CCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCC-------------------------
Confidence 0 012345568999999999999999884 45555544444
Q ss_pred cccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhh
Q 004760 500 RGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIG 579 (732)
Q Consensus 500 ~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~ 579 (732)
.+++++|+|+.. .++.+
T Consensus 260 ------------------------------------------------------------~~l~ivG~g~~~-~~~~l-- 276 (397)
T TIGR03087 260 ------------------------------------------------------------AEFYIVGAKPSP-AVRAL-- 276 (397)
T ss_pred ------------------------------------------------------------cEEEEECCCChH-HHHHh--
Confidence 357788888642 22211
Q ss_pred ccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC
Q 004760 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (732)
Q Consensus 580 ~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG 659 (732)
+..++|+|+|+++++..+|+.||++|+||+ ..||+|++++||||||+|||+|+.++
T Consensus 277 -----------------------~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV~t~~~~ 332 (397)
T TIGR03087 277 -----------------------AALPGVTVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVVASPEAA 332 (397)
T ss_pred -----------------------ccCCCeEEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEEecCccc
Confidence 234579999999999999999999999997 37999999999999999999999754
Q ss_pred hhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 660 TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 660 ~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
. .+...+.+|++++ +|+ ++|+++|.++++|++.+++|++++++.++++|+|+.+++++.++|..|
T Consensus 333 ~-~i~~~~~~g~lv~-~~~--~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~~~ 397 (397)
T TIGR03087 333 E-GIDALPGAELLVA-ADP--ADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLEQP 397 (397)
T ss_pred c-cccccCCcceEeC-CCH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 2 3344446788887 666 999999999999999999999999999999999999999999998653
No 56
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.95 E-value=3.2e-26 Score=256.95 Aligned_cols=330 Identities=14% Similarity=0.089 Sum_probs=223.2
Q ss_pred cCCeEEEEeCCC--CCCcHHHHHHHHHHHHHHCC-CEEEEEEeCCCC---------------CChhH--H---HhCCc--
Q 004760 241 WSRKFILIFHEL--SMTGAPLSMMELATELLSCG-ATVSAVVLSKRG---------------GLMPE--L---ARRKI-- 295 (732)
Q Consensus 241 ~~~kIllI~h~l--s~gGA~~~~~eLA~~L~~~G-~~V~vv~l~~~g---------------~l~~e--l---~~~gI-- 295 (732)
++.||++++... .++|+..++..+|.+|.+.| |+|.+|.+.-.. +..++ . ....|
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 468899888877 58999999999999999999 799999864221 00011 0 00111
Q ss_pred -EEEEcCCCch-----------------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhh-
Q 004760 296 -KVLEDRGEPS-----------------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAK- 356 (732)
Q Consensus 296 -~v~~~~~~~~-----------------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~- 356 (732)
+-+..+..+. ...+.+||+||+++-....|...... .......++...|.+...|+....
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~-~~~k~~~vV~tyHT~y~~Y~~~~~~ 161 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKR-WKTKFRLVIGIVHTNYLEYVKREKN 161 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHH-HHhcCCcEEEEECCChHHHHHHhcc
Confidence 1111111111 23378999999999888887521111 111112255556665555543321
Q ss_pred ------------hhh--ccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhh
Q 004760 357 ------------LVL--DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM 422 (732)
Q Consensus 357 ------------~~l--~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~ 422 (732)
.++ ...+.++..|..... +. . .+....+|+|...|.+...
T Consensus 162 g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~------------l~--~------------~~i~~v~GVd~~~f~~~~~ 215 (462)
T PLN02846 162 GRVKAFLLKYINSWVVDIYCHKVIRLSAATQD------------YP--R------------SIICNVHGVNPKFLEIGKL 215 (462)
T ss_pred chHHHHHHHHHHHHHHHHhcCEEEccCHHHHH------------Hh--h------------CEEecCceechhhcCCCcc
Confidence 111 013444555543210 00 0 1123458999998876542
Q ss_pred HHHhHHhHHHHHHHhCCCCCC--EEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhcccccccccccccccccc
Q 004760 423 REKRNLLRDSVRKEMGLTDQD--MLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLR 500 (732)
Q Consensus 423 ~ekr~~~r~~~R~~lgl~~~~--~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~ 500 (732)
. .++... .++. ..++|+||+.+.||++.||+|++.+.+..++
T Consensus 216 ~---------~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~-------------------------- 259 (462)
T PLN02846 216 K---------LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSG-------------------------- 259 (462)
T ss_pred c---------HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCC--------------------------
Confidence 1 222222 3442 3689999999999999999999998665544
Q ss_pred ccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhc
Q 004760 501 GRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGS 580 (732)
Q Consensus 501 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~ 580 (732)
.+++++|+|++++.|+.++..
T Consensus 260 -----------------------------------------------------------~~l~ivGdGp~~~~L~~~a~~ 280 (462)
T PLN02846 260 -----------------------------------------------------------LEVDLYGSGEDSDEVKAAAEK 280 (462)
T ss_pred -----------------------------------------------------------eEEEEECCCccHHHHHHHHHh
Confidence 368899999999988887743
Q ss_pred cCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCCh
Q 004760 581 VGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT 660 (732)
Q Consensus 581 ~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~ 660 (732)
. ++...+ |.|. .+..++|..+|+||+||. .|+||++++||||||+|||+++.++
T Consensus 281 l---------------------~l~~~v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~- 334 (462)
T PLN02846 281 L---------------------ELDVRV-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS- 334 (462)
T ss_pred c---------------------CCcEEE-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCCC-
Confidence 3 554444 7785 466689999999999998 9999999999999999999999998
Q ss_pred hhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 661 KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 661 ~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
.|++.++.+|++++ |. +++++++..++.++. .+++.+++ +.|||+..+++++++|+-.
T Consensus 335 ~~~v~~~~ng~~~~--~~--~~~a~ai~~~l~~~~--~~~~~~a~----~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 335 NEFFKQFPNCRTYD--DG--KGFVRATLKALAEEP--APLTDAQR----HELSWEAATERFLRVADLD 392 (462)
T ss_pred cceeecCCceEecC--CH--HHHHHHHHHHHccCc--hhHHHHHH----HhCCHHHHHHHHHHHhccC
Confidence 59999999998884 44 899999999998543 33433333 4799999999999998643
No 57
>PLN00142 sucrose synthase
Probab=99.95 E-value=4.8e-26 Score=267.48 Aligned_cols=224 Identities=18% Similarity=0.224 Sum_probs=168.8
Q ss_pred eEEeecCCCCCCCCCchhhHHHhH-H----------hHHHHHHHhCC--CCCCEEEEEEecCCCCCCHHHHHHHHHHhHH
Q 004760 404 FVAGFTCSLNTPTSSPEKMREKRN-L----------LRDSVRKEMGL--TDQDMLVLSLSSINPGKGQLLLVESAQLMIE 470 (732)
Q Consensus 404 ~v~vIpngvd~~~f~~~~~~ekr~-~----------~r~~~R~~lgl--~~~~~lil~vGri~~~KG~d~LLeA~~~l~~ 470 (732)
.+.+||||+|...|.|....+++- . .....++.+|+ +.+.++|+++||+.+.||++.||+|+..+.+
T Consensus 521 ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~ 600 (815)
T PLN00142 521 KFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKR 600 (815)
T ss_pred CeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHH
Confidence 558899999999887654322110 0 01123456776 4456789999999999999999999998754
Q ss_pred hCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCc
Q 004760 471 QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDA 550 (732)
Q Consensus 471 ~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~ 550 (732)
..++
T Consensus 601 l~~~---------------------------------------------------------------------------- 604 (815)
T PLN00142 601 LREL---------------------------------------------------------------------------- 604 (815)
T ss_pred hCCC----------------------------------------------------------------------------
Confidence 4332
Q ss_pred cccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch------hhHHHHHH-H
Q 004760 551 VSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT------TRVASLYS-A 623 (732)
Q Consensus 551 v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~------~dv~~lys-a 623 (732)
.+|+++|.|.....- ....+..+++++. .+.+.+++.++|.|+|.+ .++..+|+ +
T Consensus 605 ---------~~LVIVGgg~d~~~s--------~d~ee~~el~~L~-~La~~lgL~~~V~flG~~~~~~~~~eLyr~iada 666 (815)
T PLN00142 605 ---------VNLVVVGGFIDPSKS--------KDREEIAEIKKMH-SLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADT 666 (815)
T ss_pred ---------cEEEEEECCcccccc--------ccHHHHHHHHHHH-HHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhh
Confidence 256677765210000 0000001222333 344556999999999854 34666666 4
Q ss_pred cCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHH----hcCHHHHHH
Q 004760 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYL----LKNPSVRER 699 (732)
Q Consensus 624 ADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~L----L~n~~~r~~ 699 (732)
+|+||+||. +|+||++++||||||+|||+|+.||+.|+|.++.+|+++++.|+ ++++++|..+ +.|++.+++
T Consensus 667 aDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~--eaLA~aI~~lLekLl~Dp~lr~~ 742 (815)
T PLN00142 667 KGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHG--DEAANKIADFFEKCKEDPSYWNK 742 (815)
T ss_pred CCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCH--HHHHHHHHHHHHHhcCCHHHHHH
Confidence 799999997 99999999999999999999999999999999999999999988 9999998754 579999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 700 MAMEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 700 m~~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
|+++|++++.++|+|+.++++++++.
T Consensus 743 mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 743 ISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 58
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.94 E-value=1.7e-25 Score=254.31 Aligned_cols=226 Identities=16% Similarity=0.226 Sum_probs=176.7
Q ss_pred hccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhC
Q 004760 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (732)
Q Consensus 359 l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lg 438 (732)
.+.++.++++|+.+.......+ ...+.. ...+.+||||++...+.+..
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~----~~~~~~-----------~~ki~viP~g~~~~~~~~~~----------------- 315 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQF----KKYYNI-----------EPRIYTIPVGSLDELQYPEQ----------------- 315 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHh----hhhcCC-----------CCcEEEEcCCCcccccCccc-----------------
Confidence 3447889999998744211111 001111 12357999997654443211
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCccccc
Q 004760 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (732)
Q Consensus 439 l~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~ 518 (732)
..+...|+++||+.+.||++.+|+|+..+.++.|+
T Consensus 316 -~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~-------------------------------------------- 350 (500)
T TIGR02918 316 -ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPE-------------------------------------------- 350 (500)
T ss_pred -ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCC--------------------------------------------
Confidence 12346799999999999999999999999877665
Q ss_pred ccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHH
Q 004760 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (732)
Q Consensus 519 ~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l 598 (732)
.+|.++|.|+..+.++.++.
T Consensus 351 -----------------------------------------~~l~i~G~G~~~~~l~~~i~------------------- 370 (500)
T TIGR02918 351 -----------------------------------------LTFDIYGEGGEKQKLQKIIN------------------- 370 (500)
T ss_pred -----------------------------------------eEEEEEECchhHHHHHHHHH-------------------
Confidence 35778899987666665553
Q ss_pred HhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC-ChhhhhccCceEEEECCC-
Q 004760 599 SQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GTKEIVEHNVTGLLHPPG- 676 (732)
Q Consensus 599 ~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g-G~~EiVe~g~~Gll~~~~- 676 (732)
.+++.++|.|+|+. ++.++|+.||++|+||. .||||++++||||||+|||+++++ |.+|+|+++.+|++++++
T Consensus 371 --~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~ 445 (500)
T TIGR02918 371 --ENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDE 445 (500)
T ss_pred --HcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCc
Confidence 33778899999976 89999999999999998 999999999999999999999985 899999999999999843
Q ss_pred ---CC-c-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 677 ---HP-G-AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 677 ---d~-~-~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
|+ + .++||++|..+++ ++.+++|++++++.++ .|+|+.++++|.++++.+
T Consensus 446 ~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~-~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 446 EEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAE-GFLTANIIEKWKKLVREV 500 (500)
T ss_pred cccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhC
Confidence 21 1 3899999999995 5678999999999776 599999999999998753
No 59
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.94 E-value=1.9e-25 Score=238.84 Aligned_cols=303 Identities=21% Similarity=0.263 Sum_probs=201.1
Q ss_pred eEEEEeCCCC-CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch-----------------
Q 004760 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS----------------- 305 (732)
Q Consensus 244 kIllI~h~ls-~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~----------------- 305 (732)
||+++.+.+. +||+|+.+.+||+.|.+ .+|..+.. ..+.........++.+......+.
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~--~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPD--ADIFTLVD-DPDKLPRLLRLKKIRTSFIQKLPFARRRYRKYLPLMPLAIE 77 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCC--CCEEEEee-cCCccchhhcCCceeechhhhchhhHhhHhhhCchhhHHHH
Confidence 4666666664 89999999999999865 33433331 222222222112222221111100
Q ss_pred hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh-------HhH------------------HH-hhhhh
Q 004760 306 FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------EYF------------------DR-AKLVL 359 (732)
Q Consensus 306 ~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~-------~~~------------------~~-~~~~l 359 (732)
.....++|+||+++...+. ++. .......++++|...+ .+. .. ....+
T Consensus 78 ~~~~~~~D~v~~~~~~~~~----~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (351)
T cd03804 78 QFDLSGYDLVISSSHAVAK----GVI--TRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSA 151 (351)
T ss_pred hccccCCCEEEEcCcHHhc----ccc--CCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHh
Confidence 1114689999887532221 111 1122234445443211 110 00 11234
Q ss_pred ccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCC
Q 004760 360 DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGL 439 (732)
Q Consensus 360 ~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl 439 (732)
.+++.++++|+..... + .+. . + .+ ..+|+||+|.+.|.+..
T Consensus 152 ~~~d~ii~~S~~~~~~----~----~~~-~-~-------~~----~~vi~~~~d~~~~~~~~------------------ 192 (351)
T cd03804 152 ARVDYFIANSRFVARR----I----KKY-Y-G-------RD----ATVIYPPVDTDRFTPAE------------------ 192 (351)
T ss_pred cCCCEEEECCHHHHHH----H----HHH-h-C-------CC----cEEECCCCCHhhcCcCC------------------
Confidence 5688999999987543 2 111 1 1 11 16899999988776433
Q ss_pred CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccc
Q 004760 440 TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELS 519 (732)
Q Consensus 440 ~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~ 519 (732)
..+..++++|++.+.||++.+++|+..+ +
T Consensus 193 -~~~~~il~~G~~~~~K~~~~li~a~~~~----~---------------------------------------------- 221 (351)
T cd03804 193 -EKEDYYLSVGRLVPYKRIDLAIEAFNKL----G---------------------------------------------- 221 (351)
T ss_pred -CCCCEEEEEEcCccccChHHHHHHHHHC----C----------------------------------------------
Confidence 1234688999999999999999999865 1
Q ss_pred cchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHH
Q 004760 520 VSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLS 599 (732)
Q Consensus 520 ~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~ 599 (732)
.+++++|+|++.+.++.
T Consensus 222 ----------------------------------------~~l~ivG~g~~~~~l~~----------------------- 238 (351)
T cd03804 222 ----------------------------------------KRLVVIGDGPELDRLRA----------------------- 238 (351)
T ss_pred ----------------------------------------CcEEEEECChhHHHHHh-----------------------
Confidence 14677888876544432
Q ss_pred hcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCC
Q 004760 600 QHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 600 ~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d 677 (732)
+..++|.|+|++ +++.++|++||++++|| .|+||++++||||||+|||+++.||..|++.++.+|++++++|
T Consensus 239 ---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps---~e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~ 312 (351)
T cd03804 239 ---KAGPNVTFLGRVSDEELRDLYARARAFLFPA---EEDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQT 312 (351)
T ss_pred ---hcCCCEEEecCCCHHHHHHHHHhCCEEEECC---cCCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCC
Confidence 234789999987 45999999999999999 3999999999999999999999999999999999999999988
Q ss_pred CcHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNPS-VRERMAMEGRKKVERMYLKKHMYKKL 721 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~-~r~~m~~~~r~~v~~~ys~~~~~~~~ 721 (732)
+ ++++++|..+++|++ .++++ ++.++ .|+|+++.+++
T Consensus 313 ~--~~la~~i~~l~~~~~~~~~~~----~~~~~-~~~~~~~~~~~ 350 (351)
T cd03804 313 V--ESLAAAVERFEKNEDFDPQAI----RAHAE-RFSESRFREKI 350 (351)
T ss_pred H--HHHHHHHHHHHhCcccCHHHH----HHHHH-hcCHHHHHHHh
Confidence 8 999999999999984 34444 44444 59999998875
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.94 E-value=9.3e-25 Score=241.47 Aligned_cols=223 Identities=23% Similarity=0.326 Sum_probs=180.7
Q ss_pred hhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHH
Q 004760 357 LVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKE 436 (732)
Q Consensus 357 ~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~ 436 (732)
..+.+++.++++|+..... +. ..++... ..+.+++||++.+.+.+...
T Consensus 179 ~~~~~~d~ii~~S~~~~~~----l~---~~~~~~~-----------~ki~vi~~gv~~~~~~~~~~-------------- 226 (407)
T cd04946 179 YLLSSLDAVFPCSEQGRNY----LQ---KRYPAYK-----------EKIKVSYLGVSDPGIISKPS-------------- 226 (407)
T ss_pred HHHhcCCEEEECCHHHHHH----HH---HHCCCcc-----------ccEEEEECCcccccccCCCC--------------
Confidence 3456789999999987543 20 0112111 23479999999887654311
Q ss_pred hCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCccc
Q 004760 437 MGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (732)
Q Consensus 437 lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~ 516 (732)
.++.+.|+++|++.+.||++.+++|+..+.++.|+.
T Consensus 227 ---~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~----------------------------------------- 262 (407)
T cd04946 227 ---KDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSI----------------------------------------- 262 (407)
T ss_pred ---CCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCc-----------------------------------------
Confidence 245678999999999999999999999998876641
Q ss_pred ccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHH
Q 004760 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILE 596 (732)
Q Consensus 517 ~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~ 596 (732)
...+.++|+|++...++.++.
T Consensus 263 ------------------------------------------~l~~~iiG~g~~~~~l~~~~~----------------- 283 (407)
T cd04946 263 ------------------------------------------KIKWTHIGGGPLEDTLKELAE----------------- 283 (407)
T ss_pred ------------------------------------------eEEEEEEeCchHHHHHHHHHH-----------------
Confidence 124567888887776666653
Q ss_pred HHHhcCCCCCcEEEccch--hhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEE
Q 004760 597 FLSQHSNLSKAMLWTPAT--TRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL 672 (732)
Q Consensus 597 ~l~~~l~l~~~V~f~G~~--~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll 672 (732)
..+..++|.|+|++ +++..+|+. ||++++||. .||+|++++||||||+|||+|+.||..|++.++.+|++
T Consensus 284 ----~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l 357 (407)
T cd04946 284 ----SKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLL 357 (407)
T ss_pred ----hcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEE
Confidence 22566789999987 578899976 789999998 99999999999999999999999999999999999999
Q ss_pred ECCC-CCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 673 HPPG-HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLS 722 (732)
Q Consensus 673 ~~~~-d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ 722 (732)
++++ |+ ++++++|..+++|++.+++|+++|++.++++|+++..+++|+
T Consensus 358 ~~~~~~~--~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 358 LSKDPTP--NELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred eCCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 9875 55 999999999999999999999999999999999999999885
No 61
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.94 E-value=4.7e-25 Score=237.25 Aligned_cols=262 Identities=20% Similarity=0.323 Sum_probs=197.0
Q ss_pred cCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh------------HhHHHhhhhhccccEEEEecHHhHHHhh
Q 004760 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------------EYFDRAKLVLDRVKLLVFLSESQTKQWL 377 (732)
Q Consensus 310 ~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~------------~~~~~~~~~l~r~~~li~vS~~~~~~~~ 377 (732)
.++|++|+++.....+ .+.......+ .+.++|..+- .++......+.+.+.+++.|+.+...
T Consensus 98 ~~~diii~~~~~~~~~---~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-- 171 (372)
T cd04949 98 TKPDVFILDRPTLDGQ---ALLNMKKAAK-VVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQD-- 171 (372)
T ss_pred CCCCEEEECCccccch---hHHhccCCce-EEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHH--
Confidence 6899999987665544 1222222222 3334442211 11112223345688899999887443
Q ss_pred hHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCC
Q 004760 378 TWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKG 457 (732)
Q Consensus 378 ~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG 457 (732)
+. ..... . ..+.+||||++.+.+.+... .......++++|++.+.||
T Consensus 172 -l~------~~~~~-------~---~~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vgrl~~~K~ 218 (372)
T cd04949 172 -LQ------KQFGN-------Y---NPIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVARLAPEKQ 218 (372)
T ss_pred -HH------HHhCC-------C---CceEEEcccccChhhcccch----------------hhcCCCeEEEEEccCcccC
Confidence 11 11111 0 11589999999887755321 0134567899999999999
Q ss_pred HHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCC
Q 004760 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (732)
Q Consensus 458 ~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~ 537 (732)
++.+|+|+..+.++.|+
T Consensus 219 ~~~li~a~~~l~~~~~~--------------------------------------------------------------- 235 (372)
T cd04949 219 LDQLIKAFAKVVKQVPD--------------------------------------------------------------- 235 (372)
T ss_pred HHHHHHHHHHHHHhCCC---------------------------------------------------------------
Confidence 99999999999887776
Q ss_pred CCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhH
Q 004760 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRV 617 (732)
Q Consensus 538 ~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv 617 (732)
.++.++|.|+....++.++ +.+++.++|.|.|+.+++
T Consensus 236 ----------------------~~l~i~G~g~~~~~~~~~~---------------------~~~~~~~~v~~~g~~~~~ 272 (372)
T cd04949 236 ----------------------ATLDIYGYGDEEEKLKELI---------------------EELGLEDYVFLKGYTRDL 272 (372)
T ss_pred ----------------------cEEEEEEeCchHHHHHHHH---------------------HHcCCcceEEEcCCCCCH
Confidence 2567778887655555444 233788899999999999
Q ss_pred HHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC-ChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHH
Q 004760 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (732)
Q Consensus 618 ~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g-G~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~ 696 (732)
..+|+.||++|+||. .|+||++++|||+||+|||+++.+ |..|++.++.+|++++++|+ ++|+++|..+++|++.
T Consensus 273 ~~~~~~ad~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~--~~la~~i~~ll~~~~~ 348 (372)
T cd04949 273 DEVYQKAQLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGDI--EALAEAIIELLNDPKL 348 (372)
T ss_pred HHHHhhhhEEEeccc--ccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeCCCcH--HHHHHHHHHHHcCHHH
Confidence 999999999999998 899999999999999999999987 89999999999999999888 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHH
Q 004760 697 RERMAMEGRKKVERMYLKKHMYKKL 721 (732)
Q Consensus 697 r~~m~~~~r~~v~~~ys~~~~~~~~ 721 (732)
+++|++++++.+ ++|+|++++++|
T Consensus 349 ~~~~~~~a~~~~-~~~s~~~~~~~w 372 (372)
T cd04949 349 LQKFSEAAYENA-ERYSEENVWEKW 372 (372)
T ss_pred HHHHHHHHHHHH-HHhhHHHHHhcC
Confidence 999999999995 569999998864
No 62
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.93 E-value=2.4e-25 Score=236.39 Aligned_cols=337 Identities=18% Similarity=0.227 Sum_probs=238.8
Q ss_pred eEEEEeCCC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch---------------h
Q 004760 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS---------------F 306 (732)
Q Consensus 244 kIllI~h~l--s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~---------------~ 306 (732)
+|+.|++-+ ++||.|.+++.|++.|.+.||.|.+++..-+.-..-.....|++|+..+.... +
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pll 81 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLL 81 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCccc
Confidence 355555544 78999999999999999999999999965433222223346688876654432 1
Q ss_pred ---hhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhh--------hccccEEEEecHHhHHH
Q 004760 307 ---KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLV--------LDRVKLLVFLSESQTKQ 375 (732)
Q Consensus 307 ---~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~--------l~r~~~li~vS~~~~~~ 375 (732)
.-+.+..+||.|+++..-..+..+.....| -+.+..-|+.-. +.+..... +..++.+|++|.....
T Consensus 82 r~i~lrE~I~ivhghs~fS~lahe~l~hartMG-lktVfTdHSlfG-fad~~si~~n~ll~~sL~~id~~IcVshtske- 158 (426)
T KOG1111|consen 82 RPILLRERIEIVHGHSPFSYLAHEALMHARTMG-LKTVFTDHSLFG-FADIGSILTNKLLPLSLANIDRIICVSHTSKE- 158 (426)
T ss_pred chhhhhhceEEEecCChHHHHHHHHHHHHHhcC-ceEEEecccccc-ccchhhhhhcceeeeeecCCCcEEEEeecCCC-
Confidence 115689999999887765555554444445 445555543111 11111111 1225666666665311
Q ss_pred hhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCC-EEEEEEecCCC
Q 004760 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQD-MLVLSLSSINP 454 (732)
Q Consensus 376 ~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~-~lil~vGri~~ 454 (732)
+.-++.. -..+.+.+|||.+++..|.|.+.+ + +..+ ..++.+||+-+
T Consensus 159 --------ntvlr~~---------L~p~kvsvIPnAv~~~~f~P~~~~-~--------------~S~~i~~ivv~sRLvy 206 (426)
T KOG1111|consen 159 --------NTVLRGA---------LAPAKVSVIPNAVVTHTFTPDAAD-K--------------PSADIITIVVASRLVY 206 (426)
T ss_pred --------ceEEEec---------cCHhHeeeccceeeccccccCccc-c--------------CCCCeeEEEEEeeeee
Confidence 1222211 113456999999999999996542 1 2444 67999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccc
Q 004760 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (732)
Q Consensus 455 ~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 534 (732)
+||.|+|++++.++..+.|+
T Consensus 207 rKGiDll~~iIp~vc~~~p~------------------------------------------------------------ 226 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPE------------------------------------------------------------ 226 (426)
T ss_pred ccchHHHHHHHHHHHhcCCC------------------------------------------------------------
Confidence 99999999999999988887
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch
Q 004760 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (732)
Q Consensus 535 n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~ 614 (732)
.+++++|+||.+..++... +.+.+.++|.++|..
T Consensus 227 -------------------------vrfii~GDGPk~i~lee~l---------------------Ek~~l~~rV~~lG~v 260 (426)
T KOG1111|consen 227 -------------------------VRFIIIGDGPKRIDLEEML---------------------EKLFLQDRVVMLGTV 260 (426)
T ss_pred -------------------------eeEEEecCCcccchHHHHH---------------------HHhhccCceEEeccc
Confidence 3577889999877776555 333788999999976
Q ss_pred --hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 615 --TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 615 --~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
+++.++|...|+|+.||- .|+|+++++|||+||+|||+|.+||++|++-+. .-. .....+ ++++++++..+.
T Consensus 261 ~h~~Vr~vl~~G~IFlntSl--TEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~-~~~~~~--~dl~~~v~~ai~ 334 (426)
T KOG1111|consen 261 PHDRVRDVLVRGDIFLNTSL--TEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MIT-LGEPGP--DDLVGAVEKAIT 334 (426)
T ss_pred chHHHHHHHhcCcEEeccHH--HHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-cee-ccCCCh--HHHHHHHHHHHH
Confidence 899999999999999996 999999999999999999999999999999764 222 222333 778888877765
Q ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 693 NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 693 n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
.-.. .-....+++.++|+|+.++++..++|.++..
T Consensus 335 ~~~~---~p~~~h~~v~~~y~w~dVa~rTekvy~r~~~ 369 (426)
T KOG1111|consen 335 KLRT---LPLEFHDRVKKMYSWKDVAERTEKVYDRAAT 369 (426)
T ss_pred Hhcc---CchhHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 3211 1233456777899999999999999988764
No 63
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.93 E-value=8.3e-24 Score=242.52 Aligned_cols=324 Identities=17% Similarity=0.122 Sum_probs=222.3
Q ss_pred CCeEEEEeCCC--CCCcHHHHHHHHHHHHHHC-CCEEEEEEeCC--C-CCC------------------hhHH-HhCCc-
Q 004760 242 SRKFILIFHEL--SMTGAPLSMMELATELLSC-GATVSAVVLSK--R-GGL------------------MPEL-ARRKI- 295 (732)
Q Consensus 242 ~~kIllI~h~l--s~gGA~~~~~eLA~~L~~~-G~~V~vv~l~~--~-g~l------------------~~el-~~~gI- 295 (732)
+|.|.+|+... =|||...-=+-=|-+|++. |++|+.|++-- . ..+ ...+ ++.|.
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 35666555443 2799776655566688887 79999987421 1 100 1123 23332
Q ss_pred ---EEEEcCCCch--------------hhhhcCccEEEeCCchhhHHHH--HHHHhhcCCCccEEEEEeechhHhHHHhh
Q 004760 296 ---KVLEDRGEPS--------------FKTSMKADLVIAGSAVCATWID--QYITRFPAGGSQVVWWIMENRREYFDRAK 356 (732)
Q Consensus 296 ---~v~~~~~~~~--------------~~~~~k~DlVia~Sav~~~~i~--~~i~~~~~~~~~ivw~i~e~r~~~~~~~~ 356 (732)
++..-++.-. ....++||+||+.+-..-.|.. ...+... + + ++..+|.+...|.....
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl-~-P-VVasyHTny~eYl~~y~ 478 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF-N-H-VVGVVHTNYLEYIKREK 478 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc-C-C-eEEEEeCCcHHHHhHhc
Confidence 2222222111 3348899999999988777773 3333333 2 3 77778877777766432
Q ss_pred h-------------hhcc--ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeec--CCCCCCCCCc
Q 004760 357 L-------------VLDR--VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFT--CSLNTPTSSP 419 (732)
Q Consensus 357 ~-------------~l~r--~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIp--ngvd~~~f~~ 419 (732)
. ++.+ ++.++..|.... . + + . .+|+ ||+|+..|.|
T Consensus 479 ~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq-~-----------L---~--------~-----~vI~nVnGVDte~F~P 530 (794)
T PLN02501 479 NGALQAFFVKHINNWVTRAYCHKVLRLSAATQ-D-----------L---P--------K-----SVICNVHGVNPKFLKI 530 (794)
T ss_pred chhHHHHHHHHHHHHHHHhhCCEEEcCCHHHH-H-----------h---c--------c-----cceeecccccccccCC
Confidence 1 1111 244455543321 0 1 1 0 1222 6999999988
Q ss_pred hhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccc
Q 004760 420 EKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHL 499 (732)
Q Consensus 420 ~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l 499 (732)
..... .+.++|+......++++||+.+.||++.||+|++.+..+.++
T Consensus 531 ~~r~~--------~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pn------------------------- 577 (794)
T PLN02501 531 GEKVA--------EERELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDG------------------------- 577 (794)
T ss_pred cchhH--------HHHhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCC-------------------------
Confidence 65421 224667765445688999999999999999999988665443
Q ss_pred cccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhh
Q 004760 500 RGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIG 579 (732)
Q Consensus 500 ~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~ 579 (732)
.+++++|+|+.++.++.++.
T Consensus 578 ------------------------------------------------------------vrLvIVGDGP~reeLe~la~ 597 (794)
T PLN02501 578 ------------------------------------------------------------FNLDVFGNGEDAHEVQRAAK 597 (794)
T ss_pred ------------------------------------------------------------eEEEEEcCCccHHHHHHHHH
Confidence 36889999998888877764
Q ss_pred ccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC
Q 004760 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (732)
Q Consensus 580 ~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG 659 (732)
.. ++ +|.|+|..+++..+|+.+|+||+||. .|+||++++||||||+|||+++++|
T Consensus 598 eL---------------------gL--~V~FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG 652 (794)
T PLN02501 598 RL---------------------DL--NLNFLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPS 652 (794)
T ss_pred Hc---------------------CC--EEEecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCC
Confidence 33 44 48999999889999999999999998 9999999999999999999999998
Q ss_pred hhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 660 TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 660 ~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
. +++.++.+|+++ +|. ++++++|.+++.++..+..+.+ ...|||+.+++++++.-
T Consensus 653 ~-e~V~~g~nGll~--~D~--EafAeAI~~LLsd~~~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 653 N-EFFRSFPNCLTY--KTS--EDFVAKVKEALANEPQPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred C-ceEeecCCeEec--CCH--HHHHHHHHHHHhCchhhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 5 457777788765 555 9999999999998875544332 23699999999998764
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=99.93 E-value=1.1e-23 Score=227.91 Aligned_cols=220 Identities=18% Similarity=0.114 Sum_probs=160.3
Q ss_pred hccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhC
Q 004760 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (732)
Q Consensus 359 l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lg 438 (732)
..+++.++++|+..... . .+.+... ...+.+||||+|.+.|.+....
T Consensus 92 ~~~ad~ii~~S~~~~~~----l----~~~g~~~----------~~~i~vIpNGVd~~~f~~~~~~--------------- 138 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNA----F----YTSGLKI----------PQPIYVIPHNLNPRMFEYKPKE--------------- 138 (331)
T ss_pred hccCCEEEECCHHHHHH----H----HHcCCCC----------CCCEEEECCCCCHHHcCCCccc---------------
Confidence 35689999999997443 1 1122211 1235899999999888654321
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCccccc
Q 004760 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (732)
Q Consensus 439 l~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~ 518 (732)
....++++++|++.+.||++.||+|++.+.++.++
T Consensus 139 -~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~-------------------------------------------- 173 (331)
T PHA01630 139 -KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYD-------------------------------------------- 173 (331)
T ss_pred -cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCC--------------------------------------------
Confidence 12456777888999999999999999999776554
Q ss_pred ccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHH
Q 004760 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (732)
Q Consensus 519 ~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l 598 (732)
.+++++|.+.+...+.
T Consensus 174 -----------------------------------------~~llivG~~~~~~~l~----------------------- 189 (331)
T PHA01630 174 -----------------------------------------FYFLIKSSNMLDPRLF----------------------- 189 (331)
T ss_pred -----------------------------------------EEEEEEeCcccchhhc-----------------------
Confidence 2455566443221110
Q ss_pred HhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCC--
Q 004760 599 SQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG-- 676 (732)
Q Consensus 599 ~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~-- 676 (732)
++.. +......+++..+|+.||++|+||+ .|+||++++||||||+|||+|+.||..|++.++.+|++++.+
T Consensus 190 ----~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~ 262 (331)
T PHA01630 190 ----GLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRK 262 (331)
T ss_pred ----cccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeeccc
Confidence 1111 1111234899999999999999998 899999999999999999999999999999999898887643
Q ss_pred ---------------CCcHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 677 ---------------HPGAQVLAQNLRYLLKNP--SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 677 ---------------d~~~e~La~aL~~LL~n~--~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
+++.+++++++..++.|+ +.++++..++.+.+.++|+|+.+++++.++|++
T Consensus 263 ~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 263 PKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 223388999999988874 445555555566667789999999999999975
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.93 E-value=1.7e-23 Score=228.52 Aligned_cols=311 Identities=15% Similarity=0.085 Sum_probs=203.4
Q ss_pred CCCCcHHHHHHHHHHHHHHCCC-EEEEEEeCCCCCChhHHHhCCcEEEEcCCCch---------------h---------
Q 004760 252 LSMTGAPLSMMELATELLSCGA-TVSAVVLSKRGGLMPELARRKIKVLEDRGEPS---------------F--------- 306 (732)
Q Consensus 252 ls~gGA~~~~~eLA~~L~~~G~-~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~---------------~--------- 306 (732)
+...|++..|.+++..|.++|+ +|++++....+...+.....||+++..+.... +
T Consensus 12 ~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (371)
T PLN02275 12 LGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLL 91 (371)
T ss_pred ecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999885 79999976666665666667899988852111 0
Q ss_pred ----hhhcCccEEEeCCchh-hHHHHHHHHhhcCCCccEEEEEeechhH--------------hHHH-hhhhhccccEEE
Q 004760 307 ----KTSMKADLVIAGSAVC-ATWIDQYITRFPAGGSQVVWWIMENRRE--------------YFDR-AKLVLDRVKLLV 366 (732)
Q Consensus 307 ----~~~~k~DlVia~Sav~-~~~i~~~i~~~~~~~~~ivw~i~e~r~~--------------~~~~-~~~~l~r~~~li 366 (732)
.+..+||+||+++... ...+...+.....+.+.++ ++|..... .+.. .+......+.++
T Consensus 92 ~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii 170 (371)
T PLN02275 92 WFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVI-DWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHL 170 (371)
T ss_pred HHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEE-EcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEE
Confidence 2357999999976332 1122333444444555343 34321100 1111 112233478999
Q ss_pred EecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEE
Q 004760 367 FLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLV 446 (732)
Q Consensus 367 ~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~li 446 (732)
++|+..... . .+ .... + +.+|||+. .+.|.+....+ .+. .++..++
T Consensus 171 ~~S~~~~~~----l----~~-~~g~-------~-----i~vi~n~~-~~~f~~~~~~~-----------~~~-~~~~~~i 216 (371)
T PLN02275 171 CVTKAMQHE----L----DQ-NWGI-------R-----ATVLYDQP-PEFFRPASLEI-----------RLR-PNRPALV 216 (371)
T ss_pred ECCHHHHHH----H----HH-hcCC-------C-----eEEECCCC-HHHcCcCCchh-----------ccc-CCCcEEE
Confidence 999986442 1 11 1111 1 37899984 45665432210 011 1234577
Q ss_pred EEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhh
Q 004760 447 LSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFT 526 (732)
Q Consensus 447 l~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~ 526 (732)
+++|++.+.||++.+++|+..+..+.... +++ . .++
T Consensus 217 ~~~grl~~~k~~~~li~a~~~l~~~~~~~--~~~-------------------~--~~~--------------------- 252 (371)
T PLN02275 217 VSSTSWTPDEDFGILLEAAVMYDRRVAAR--LNE-------------------S--DSA--------------------- 252 (371)
T ss_pred EEeCceeccCCHHHHHHHHHHHHhhhhhc--ccc-------------------c--ccc---------------------
Confidence 89999999999999999999875432210 000 0 000
Q ss_pred ccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCC
Q 004760 527 QLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSK 606 (732)
Q Consensus 527 ~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~ 606 (732)
. ..-.-.+..+++++|+|+++++++.++... ++++
T Consensus 253 -------------------~-----~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~---------------------~l~~ 287 (371)
T PLN02275 253 -------------------S-----GKQSLYPRLLFIITGKGPQKAMYEEKISRL---------------------NLRH 287 (371)
T ss_pred -------------------c-----cccccCCCeEEEEEeCCCCHHHHHHHHHHc---------------------CCCc
Confidence 0 000001235799999999888777666433 6765
Q ss_pred cEEEcc-c--hhhHHHHHHHcCEEEEccC-CCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHH
Q 004760 607 AMLWTP-A--TTRVASLYSAADVYVINSQ-GLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQV 682 (732)
Q Consensus 607 ~V~f~G-~--~~dv~~lysaADv~V~pS~-~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~ 682 (732)
+.|.+ + .++++.+|++||++|+|+. ...|++|++++||||||+|||+++.||..|+|+++.+|++++ ++ ++
T Consensus 288 -v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~~--~~ 362 (371)
T PLN02275 288 -VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--SS--SE 362 (371)
T ss_pred -eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--CH--HH
Confidence 77654 3 4899999999999998632 125899999999999999999999999999999999999997 44 89
Q ss_pred HHHHHHHHh
Q 004760 683 LAQNLRYLL 691 (732)
Q Consensus 683 La~aL~~LL 691 (732)
|+++|.+++
T Consensus 363 la~~i~~l~ 371 (371)
T PLN02275 363 LADQLLELL 371 (371)
T ss_pred HHHHHHHhC
Confidence 999998874
No 66
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.92 E-value=6.9e-24 Score=240.70 Aligned_cols=330 Identities=15% Similarity=0.144 Sum_probs=216.2
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhH------HHh---HHhHHH
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR------EKR---NLLRDS 432 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~------ekr---~~~r~~ 432 (732)
++.++++|+..... | ..-++.+| + .|||||+|...|.+.... .|. ...+..
T Consensus 227 Ad~fttVS~it~~E----~---~~Ll~~~p--------d-----~ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~ 286 (590)
T cd03793 227 AHVFTTVSEITAYE----A---EHLLKRKP--------D-----VVLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGH 286 (590)
T ss_pred CCEEEECChHHHHH----H---HHHhCCCC--------C-----EEeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHH
Confidence 78899999998543 2 11135444 2 399999999998764311 111 113456
Q ss_pred HHHHhCCCCCCEEEEE-EecCCC-CCCHHHHHHHHHHhHHhCCCCchhhhhhcccccccccccccccccccccccccccc
Q 004760 433 VRKEMGLTDQDMLVLS-LSSINP-GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDD 510 (732)
Q Consensus 433 ~R~~lgl~~~~~lil~-vGri~~-~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~ 510 (732)
++..++++.+++++++ +||+.. +||+|.||+|+.++........+++...+++|.+++++-+..-.|+|+++.+++.+
T Consensus 287 ~~~~~~~~~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~ 366 (590)
T cd03793 287 FYGHYDFDLDKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRD 366 (590)
T ss_pred HhhhcCCCCCCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHH
Confidence 7888899878877766 899998 99999999999999887666555677888999999998888888999998776666
Q ss_pred ccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhh
Q 004760 511 VGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPY 590 (732)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y 590 (732)
....+-..+.-+-+...+.-- .|+.-+.+...|.+.+ ++.++.- ++..+...+.+.-.....++.
T Consensus 367 ~~~~i~~~i~~~~~~~~l~~~------~~~~~~~~~~~~~~~~------kr~~~~~---~~~~~~p~~tH~~~~~~~D~i 431 (590)
T cd03793 367 TVNSVKEKIGKRLFEAALKGK------LPDLEELLDKEDKVML------KRRIFAL---QRHSLPPVVTHNMVDDANDPI 431 (590)
T ss_pred HHHHHHHHhhhhhhhHhhccC------CCChhhhcchhhHHHH------HHHHHhh---ccCCCCCeeeecCCcCccCHH
Confidence 665554444444333333100 1111122222222211 1111111 111222223322222334444
Q ss_pred HHHHHHHHHhcCCCCC--cEEEccch---------hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC
Q 004760 591 VKEILEFLSQHSNLSK--AMLWTPAT---------TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (732)
Q Consensus 591 ~k~il~~l~~~l~l~~--~V~f~G~~---------~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG 659 (732)
+..+.+.--.+ +-.+ +|+|++.. .+..++|++||++|+||. +|+||++++||||||+|||+|+.+|
T Consensus 432 l~~~r~~~l~N-~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t~~~g 508 (590)
T cd03793 432 LNHIRRIQLFN-SPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITTNLSG 508 (590)
T ss_pred HHHHHHhcCcC-CCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEccCcc
Confidence 44443321111 1133 36777632 368999999999999998 9999999999999999999999999
Q ss_pred h----hhhhccC-ceEEEECCCC-----CcHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHh
Q 004760 660 T----KEIVEHN-VTGLLHPPGH-----PGAQVLAQNLRYLLKNPSVRERMAMEGR-KKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 660 ~----~EiVe~g-~~Gll~~~~d-----~~~e~La~aL~~LL~n~~~r~~m~~~~r-~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
+ .|++.++ ..|+++.+.+ .++++|+++|.++++. +.++++.++++ ++..+.|+|+++++.|.+.+..+
T Consensus 509 f~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~A 587 (590)
T cd03793 509 FGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLA 587 (590)
T ss_pred hhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8 5666554 3566665221 1338999999999854 56666666654 34556799999999999999988
Q ss_pred hc
Q 004760 729 MK 730 (732)
Q Consensus 729 l~ 730 (732)
++
T Consensus 588 l~ 589 (590)
T cd03793 588 LS 589 (590)
T ss_pred hh
Confidence 75
No 67
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.91 E-value=3.1e-22 Score=215.72 Aligned_cols=322 Identities=15% Similarity=0.074 Sum_probs=216.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--------------h---
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--------------S--- 305 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--------------~--- 305 (732)
.||+++.... ||++..+++||++|.+.||+|.+++... +.....++..|++++...... .
T Consensus 2 ~~i~i~~~g~--gG~~~~~~~la~~L~~~g~ev~vv~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (357)
T PRK00726 2 KKILLAGGGT--GGHVFPALALAEELKKRGWEVLYLGTAR-GMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLK 78 (357)
T ss_pred cEEEEEcCcc--hHhhhHHHHHHHHHHhCCCEEEEEECCC-chhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHH
Confidence 4666665444 6999999999999999999999998533 221223344688877654311 0
Q ss_pred -------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhh
Q 004760 306 -------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLT 378 (732)
Q Consensus 306 -------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~ 378 (732)
+.+..+||+||+++... .+. ..++....+.+ ++++.+........ +....+.+.+++.++...
T Consensus 79 ~~~~~~~~ik~~~pDvv~~~~~~~-~~~-~~~~~~~~~~p-~v~~~~~~~~~~~~--r~~~~~~d~ii~~~~~~~----- 148 (357)
T PRK00726 79 GVLQARKILKRFKPDVVVGFGGYV-SGP-GGLAARLLGIP-LVIHEQNAVPGLAN--KLLARFAKKVATAFPGAF----- 148 (357)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcc-hhH-HHHHHHHcCCC-EEEEcCCCCccHHH--HHHHHHhchheECchhhh-----
Confidence 23367899999997433 222 23334444555 44333211111111 111223555665554320
Q ss_pred HHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCH
Q 004760 379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQ 458 (732)
Q Consensus 379 ~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~ 458 (732)
. . .+ ...+.+++||++.+.+.+... +++++++++.++|+++|+....|++
T Consensus 149 -~-----~---~~----------~~~i~vi~n~v~~~~~~~~~~-----------~~~~~~~~~~~~i~~~gg~~~~~~~ 198 (357)
T PRK00726 149 -P-----E---FF----------KPKAVVTGNPVREEILALAAP-----------PARLAGREGKPTLLVVGGSQGARVL 198 (357)
T ss_pred -h-----c---cC----------CCCEEEECCCCChHhhcccch-----------hhhccCCCCCeEEEEECCcHhHHHH
Confidence 0 0 11 123589999999876643221 2346777777888899988888887
Q ss_pred HHHH-HHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCC
Q 004760 459 LLLV-ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (732)
Q Consensus 459 d~LL-eA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~ 537 (732)
..++ +|++.+... +
T Consensus 199 ~~~l~~a~~~~~~~-~---------------------------------------------------------------- 213 (357)
T PRK00726 199 NEAVPEALALLPEA-L---------------------------------------------------------------- 213 (357)
T ss_pred HHHHHHHHHHhhhC-c----------------------------------------------------------------
Confidence 5555 888776321 1
Q ss_pred CCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhH
Q 004760 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRV 617 (732)
Q Consensus 538 ~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv 617 (732)
..++++|+|+... + .+.+ + +++. |.|+|+++++
T Consensus 214 ----------------------~~~~~~G~g~~~~-~--------------------~~~~-~-~~~~--v~~~g~~~~~ 246 (357)
T PRK00726 214 ----------------------QVIHQTGKGDLEE-V--------------------RAAY-A-AGIN--AEVVPFIDDM 246 (357)
T ss_pred ----------------------EEEEEcCCCcHHH-H--------------------HHHh-h-cCCc--EEEeehHhhH
Confidence 1345677775422 2 1222 2 3553 9999999999
Q ss_pred HHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC--------hhhhhccCceEEEECCCCCcHHHHHHHHHH
Q 004760 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG--------TKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (732)
Q Consensus 618 ~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG--------~~EiVe~g~~Gll~~~~d~~~e~La~aL~~ 689 (732)
+.+|++||+++++| .+.+++|||+||+|||++..++ ..+.+.+..+|+++++.|.++++|+++|++
T Consensus 247 ~~~~~~~d~~i~~~------g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ 320 (357)
T PRK00726 247 AAAYAAADLVICRA------GASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLE 320 (357)
T ss_pred HHHHHhCCEEEECC------CHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHH
Confidence 99999999999866 2689999999999999987642 245676677899998887445999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 690 LLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 690 LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+++|++.+++|++++++.++ .+..+.+++.+.++++
T Consensus 321 ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 321 LLSDPERLEAMAEAARALGK-PDAAERLADLIEELAR 356 (357)
T ss_pred HHcCHHHHHHHHHHHHhcCC-cCHHHHHHHHHHHHhh
Confidence 99999999999999998864 5999999999988775
No 68
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.90 E-value=2.3e-21 Score=214.56 Aligned_cols=351 Identities=17% Similarity=0.217 Sum_probs=227.2
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHCCCEEEE--EEeCCCCC-ChhHHHhCCcEEEEcCCCch-----hhhhcCccEEEeC
Q 004760 247 LIFHELSMTGAPLSMMELATELLSCGATVSA--VVLSKRGG-LMPELARRKIKVLEDRGEPS-----FKTSMKADLVIAG 318 (732)
Q Consensus 247 lI~h~ls~gGA~~~~~eLA~~L~~~G~~V~v--v~l~~~g~-l~~el~~~gI~v~~~~~~~~-----~~~~~k~DlVia~ 318 (732)
+=+|..|.| -..++..|+++|.+++.++.+ .+.+..|. +..+....++.+...+.+.. +.+..+||+||++
T Consensus 53 iW~Ha~s~G-e~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~ 131 (425)
T PRK05749 53 IWFHAVSVG-ETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIM 131 (425)
T ss_pred EEEEeCCHH-HHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEE
Confidence 558999988 778899999999998755444 33223332 12222233566666665543 5557899999876
Q ss_pred CchhhHHHHHHHHhhcCCCccEEEEEeechhH-----hH-HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCc
Q 004760 319 SAVCATWIDQYITRFPAGGSQVVWWIMENRRE-----YF-DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPA 392 (732)
Q Consensus 319 Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~-----~~-~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~ 392 (732)
.. ..|...+......+.+.+++........ .+ ...+..+.+++.+++.|+..... . ..++..+
T Consensus 132 ~~--~~~~~~l~~~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~----l----~~~g~~~- 200 (425)
T PRK05749 132 ET--ELWPNLIAELKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAER----F----LALGAKN- 200 (425)
T ss_pred ec--chhHHHHHHHHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHH----H----HHcCCCC-
Confidence 43 2343333333445566554432111111 11 12234556689999999997543 2 2233322
Q ss_pred cccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhC
Q 004760 393 VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQE 472 (732)
Q Consensus 393 ~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~ 472 (732)
+ +.+++|. +.+.+.+....++ +..+|++++ .++++++++|+. .|+.+.+++|++.+.++.
T Consensus 201 ------~-----i~vi~n~-~~d~~~~~~~~~~----~~~~r~~~~--~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~ 260 (425)
T PRK05749 201 ------E-----VTVTGNL-KFDIEVPPELAAR----AATLRRQLA--PNRPVWIAASTH--EGEEELVLDAHRALLKQF 260 (425)
T ss_pred ------C-----cEecccc-cccCCCChhhHHH----HHHHHHHhc--CCCcEEEEeCCC--chHHHHHHHHHHHHHHhC
Confidence 1 3577774 3333222111111 245677777 355677777763 688999999999987665
Q ss_pred CCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccc
Q 004760 473 PSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVS 552 (732)
Q Consensus 473 p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~ 552 (732)
|+
T Consensus 261 ~~------------------------------------------------------------------------------ 262 (425)
T PRK05749 261 PN------------------------------------------------------------------------------ 262 (425)
T ss_pred CC------------------------------------------------------------------------------
Confidence 54
Q ss_pred cCCcccceeEEeccCchhh-hhHhhhhhccCCCCCChhhHHHHHHHHH-hcCCCCCcEEEccchhhHHHHHHHcCEEEE-
Q 004760 553 FGSGHLRRKVLSKSDGKQQ-QALKILIGSVGSKSNKVPYVKEILEFLS-QHSNLSKAMLWTPATTRVASLYSAADVYVI- 629 (732)
Q Consensus 553 iG~~~~~~~LlivG~G~~~-~~Lk~li~~~G~~~~~~~y~k~il~~l~-~~l~l~~~V~f~G~~~dv~~lysaADv~V~- 629 (732)
.+++++|+|+++ ++++.++...|-.. ..... ....-...|.+.+..+++..+|+.||++++
T Consensus 263 -------~~liivG~g~~r~~~l~~~~~~~gl~~---------~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~ 326 (425)
T PRK05749 263 -------LLLILVPRHPERFKEVEELLKKAGLSY---------VRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVG 326 (425)
T ss_pred -------cEEEEcCCChhhHHHHHHHHHhCCCcE---------EEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEEC
Confidence 357889999876 66776665443100 00000 000011356777777899999999999666
Q ss_pred ccCCCCCCCcHHHHHHHHcCCCEEEcCC-CChhhhhccC-ceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 630 NSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHN-VTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (732)
Q Consensus 630 pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~~EiVe~g-~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~ 707 (732)
+|. .|++|.+++||||||+|||+++. ++..|+++.. .+|++++++|. ++|+++|..+++|++.+++|++++++.
T Consensus 327 ~S~--~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~--~~La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 327 GSL--VKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDA--EDLAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred CCc--CCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCH--HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 564 79999999999999999999865 6677766542 46788888887 999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhc
Q 004760 708 VERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 708 v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
++++ ....++++++|.+.+.
T Consensus 403 ~~~~---~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 403 LKQN---QGALQRTLQLLEPYLP 422 (425)
T ss_pred HHhC---ccHHHHHHHHHHHhcc
Confidence 9875 4677888888877664
No 69
>PHA01633 putative glycosyl transferase group 1
Probab=99.90 E-value=4.1e-22 Score=216.07 Aligned_cols=226 Identities=14% Similarity=0.151 Sum_probs=163.4
Q ss_pred hhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHH
Q 004760 355 AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVR 434 (732)
Q Consensus 355 ~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R 434 (732)
...++.+-..++.+|+..... . .+.+... . ..|++|+|++.|.+... ....+|
T Consensus 86 y~~~m~~~~~vIavS~~t~~~----L----~~~G~~~--------~-----i~I~~GVD~~~f~p~~~------~~~~~r 138 (335)
T PHA01633 86 VNKYLLQDVKFIPNSKFSAEN----L----QEVGLQV--------D-----LPVFHGINFKIVENAEK------LVPQLK 138 (335)
T ss_pred HHHHHhcCCEEEeCCHHHHHH----H----HHhCCCC--------c-----eeeeCCCChhhcCccch------hhHHHH
Confidence 334455556789999987543 1 2233332 1 24778999999987542 113456
Q ss_pred HHhCCC-CCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccC
Q 004760 435 KEMGLT-DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGL 513 (732)
Q Consensus 435 ~~lgl~-~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~ 513 (732)
++++.. .+.++|+++||+.++||++.|++|++.+.++.|+.
T Consensus 139 ~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~-------------------------------------- 180 (335)
T PHA01633 139 QKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDI-------------------------------------- 180 (335)
T ss_pred HHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCc--------------------------------------
Confidence 666643 35678999999999999999999999998776641
Q ss_pred cccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHH
Q 004760 514 SSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKE 593 (732)
Q Consensus 514 ~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~ 593 (732)
....+++++|++ .+
T Consensus 181 -------------------------------------------~~~i~l~ivG~~----~~------------------- 194 (335)
T PHA01633 181 -------------------------------------------AKKIHFFVISHK----QF------------------- 194 (335)
T ss_pred -------------------------------------------cccEEEEEEcHH----HH-------------------
Confidence 001234444421 01
Q ss_pred HHHHHHhcCCCCCcEEEcc---c--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--
Q 004760 594 ILEFLSQHSNLSKAMLWTP---A--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH-- 666 (732)
Q Consensus 594 il~~l~~~l~l~~~V~f~G---~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~-- 666 (732)
+.++++++|.|+| . .+++..+|++||+||+||. .|+||++++||||||+|||+++.+|+.|++.+
T Consensus 195 ------~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~ 266 (335)
T PHA01633 195 ------TQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQW 266 (335)
T ss_pred ------HHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCceeecCCcc
Confidence 1226678899985 3 4789999999999999998 99999999999999999999999999987542
Q ss_pred ----------------CceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 667 ----------------NVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 667 ----------------g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~e 723 (732)
+.+|++++..|+ ++|+++|..+++..+ +..+++++++.++ .|+|+.++++|++
T Consensus 267 ~~Li~~~~v~~~~~~~~g~g~~~~~~d~--~~la~ai~~~~~~~~-~~~~~~~~~~~a~-~f~~~~~~~~~~~ 335 (335)
T PHA01633 267 NLLIKSSKVEEYYDKEHGQKWKIHKFQI--EDMANAIILAFELQD-REERSMKLKELAK-KYDIRNLYTRFLE 335 (335)
T ss_pred ceeeCCCCHHHhcCcccCceeeecCCCH--HHHHHHHHHHHhccC-hhhhhHHHHHHHH-hcCHHHHHHHhhC
Confidence 235677777777 999999999855432 3344677777776 5999999999864
No 70
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.89 E-value=1.5e-21 Score=208.47 Aligned_cols=312 Identities=15% Similarity=0.105 Sum_probs=206.6
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc-----------------------
Q 004760 248 IFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------------------- 304 (732)
Q Consensus 248 I~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~----------------------- 304 (732)
+++..+.||+...+.+||++|.++||+|.+++... +.....+...|+++...+...
T Consensus 3 ~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (350)
T cd03785 3 LIAGGGTGGHIFPALALAEELRERGAEVLFLGTKR-GLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQA 81 (350)
T ss_pred EEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCC-cchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999998543 322223333567766543321
Q ss_pred -hhhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhh-hccccEEEEecHHhHHHhhhHHHh
Q 004760 305 -SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLV-LDRVKLLVFLSESQTKQWLTWCEE 382 (732)
Q Consensus 305 -~~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~-l~r~~~li~vS~~~~~~~~~~~~~ 382 (732)
.+.++.+||+||+++.... +...++....+.+.+++ .+. .+....... ....+.+++.++....
T Consensus 82 ~~~i~~~~pDvI~~~~~~~~--~~~~~~a~~~~~p~v~~-~~~---~~~~~~~~~~~~~~~~vi~~s~~~~~-------- 147 (350)
T cd03785 82 RKILKKFKPDVVVGFGGYVS--GPVGLAAKLLGIPLVIH-EQN---AVPGLANRLLARFADRVALSFPETAK-------- 147 (350)
T ss_pred HHHHHhcCCCEEEECCCCcc--hHHHHHHHHhCCCEEEE-cCC---CCccHHHHHHHHhhCEEEEcchhhhh--------
Confidence 0223779999999864332 22234444555554332 211 111111112 2236777777776422
Q ss_pred hhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHH-HH
Q 004760 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQL-LL 461 (732)
Q Consensus 383 e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d-~L 461 (732)
. ..+ ..+.+|+||+|.+.+.+.. . |++++++++.++++++|+....|+.+ ++
T Consensus 148 ----~-~~~-----------~~~~~i~n~v~~~~~~~~~----------~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l 200 (350)
T cd03785 148 ----Y-FPK-----------DKAVVTGNPVREEILALDR----------E-RARLGLRPGKPTLLVFGGSQGARAINEAV 200 (350)
T ss_pred ----c-CCC-----------CcEEEECCCCchHHhhhhh----------h-HHhcCCCCCCeEEEEECCcHhHHHHHHHH
Confidence 1 111 1347899999987664321 1 67788888888888888777777765 45
Q ss_pred HHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCc
Q 004760 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (732)
Q Consensus 462 LeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~l 541 (732)
++|+..+.+ ++
T Consensus 201 ~~a~~~l~~--~~------------------------------------------------------------------- 211 (350)
T cd03785 201 PEALAELLR--KR------------------------------------------------------------------- 211 (350)
T ss_pred HHHHHHhhc--cC-------------------------------------------------------------------
Confidence 688877641 11
Q ss_pred ccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHH
Q 004760 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLY 621 (732)
Q Consensus 542 f~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~ly 621 (732)
...++++|.| ..+.++..+. . +.++|+|.|+++++.++|
T Consensus 212 -----------------~~~~~i~G~g-~~~~l~~~~~---------------------~--~~~~v~~~g~~~~~~~~l 250 (350)
T cd03785 212 -----------------LQVIHQTGKG-DLEEVKKAYE---------------------E--LGVNYEVFPFIDDMAAAY 250 (350)
T ss_pred -----------------eEEEEEcCCc-cHHHHHHHHh---------------------c--cCCCeEEeehhhhHHHHH
Confidence 0124456776 3344443331 1 146899999999999999
Q ss_pred HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC--------hhhhhccCceEEEECCCCCcHHHHHHHHHHHhcC
Q 004760 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG--------TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 622 saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG--------~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n 693 (732)
+.||++|++| . +++++|||++|+|||+++.++ ..+.+.+..+|++++.++.+.++|+++|..+++|
T Consensus 251 ~~ad~~v~~s---g---~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 251 AAADLVISRA---G---ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD 324 (350)
T ss_pred HhcCEEEECC---C---HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC
Confidence 9999999766 2 689999999999999987654 2466666679999987732339999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHH
Q 004760 694 PSVRERMAMEGRKKVERMYLKKHMY 718 (732)
Q Consensus 694 ~~~r~~m~~~~r~~v~~~ys~~~~~ 718 (732)
++.+++|+.++++.++ .+..++++
T Consensus 325 ~~~~~~~~~~~~~~~~-~~~~~~i~ 348 (350)
T cd03785 325 PERLKAMAEAARSLAR-PDAAERIA 348 (350)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHH
Confidence 9999999999998765 46666554
No 71
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.88 E-value=8.4e-22 Score=189.88 Aligned_cols=168 Identities=31% Similarity=0.607 Sum_probs=143.5
Q ss_pred HHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh-CCCCchhhhhhcccccccccccccccccccccccccc
Q 004760 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (732)
Q Consensus 430 r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~-~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~ 508 (732)
|+..|...+.++++.+|+++|++.+.||++.+++|+..+.++ .++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~---------------------------------- 47 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPN---------------------------------- 47 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTT----------------------------------
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCC----------------------------------
Confidence 467888999999999999999999999999999999999764 333
Q ss_pred ccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCCh
Q 004760 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (732)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~ 588 (732)
..++++|.+.....++..+
T Consensus 48 ---------------------------------------------------~~l~i~G~~~~~~~~~~~~---------- 66 (172)
T PF00534_consen 48 ---------------------------------------------------YKLVIVGDGEYKKELKNLI---------- 66 (172)
T ss_dssp ---------------------------------------------------EEEEEESHCCHHHHHHHHH----------
T ss_pred ---------------------------------------------------eEEEEEccccccccccccc----------
Confidence 3567777555444444444
Q ss_pred hhHHHHHHHHHhcCCCCCcEEEccchh--hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc
Q 004760 589 PYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH 666 (732)
Q Consensus 589 ~y~k~il~~l~~~l~l~~~V~f~G~~~--dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~ 666 (732)
+.+++.+++.|.|... ++..+|+.||++|+||. .|+||++++|||+||+|||+++.|+..|++.+
T Consensus 67 -----------~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~ 133 (172)
T PF00534_consen 67 -----------EKLNLKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNNEIIND 133 (172)
T ss_dssp -----------HHTTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT
T ss_pred -----------ccccccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCceeecc
Confidence 3337888999999885 99999999999999998 89999999999999999999999999999999
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 667 NVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (732)
Q Consensus 667 g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~ 707 (732)
+.+|+++++.++ ++++++|.+++++++.++.|+++++++
T Consensus 134 ~~~g~~~~~~~~--~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 134 GVNGFLFDPNDI--EELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp TTSEEEESTTSH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEeCCCCH--HHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 999999999977 999999999999999999999999864
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.88 E-value=5.8e-21 Score=215.24 Aligned_cols=305 Identities=15% Similarity=0.138 Sum_probs=195.6
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeec--hhHhHHH------hhhhhccccEEEEecHHhHHHhhhHHHh
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN--RREYFDR------AKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~--r~~~~~~------~~~~l~r~~~li~vS~~~~~~~~~~~~~ 382 (732)
..|+|+.|..+.. .++.++..... ...+.|..|-. -.+.|.. .-..+...+.+.|.+..........|..
T Consensus 131 ~~d~iwihDyhl~-llp~~lr~~~~-~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~ 208 (460)
T cd03788 131 PGDLVWVHDYHLL-LLPQMLRERGP-DARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCCSR 208 (460)
T ss_pred CCCEEEEeChhhh-HHHHHHHhhCC-CCeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHHHH
Confidence 6799988865321 23344432222 23466666521 1122210 1112223788888887654444444421
Q ss_pred hhhhccCCCcc-ccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHH
Q 004760 383 EKLKLRSQPAV-VPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (732)
Q Consensus 383 e~i~l~~~~~~-v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~L 461 (732)
. ++..... ..+........+.+||||+|++.|.+....+. .+..+++..+...+.++|+++||+.+.||++.+
T Consensus 209 ~---l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~l 282 (460)
T cd03788 209 L---LGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPE---VQERAAELRERLGGRKLIVGVDRLDYSKGIPER 282 (460)
T ss_pred H---cCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCch---hHHHHHHHHHhcCCCEEEEEecCccccCCHHHH
Confidence 1 1111100 00111222345789999999998865432111 223344445666678899999999999999999
Q ss_pred HHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCc
Q 004760 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (732)
Q Consensus 462 LeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~l 541 (732)
|+|++.+.++.|+. +
T Consensus 283 l~A~~~ll~~~p~~------------------------~----------------------------------------- 297 (460)
T cd03788 283 LLAFERLLERYPEW------------------------R----------------------------------------- 297 (460)
T ss_pred HHHHHHHHHhChhh------------------------c-----------------------------------------
Confidence 99999998887751 0
Q ss_pred ccccCCCCccccCCcccceeEEeccC-----chhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCC---CCCcEEEccc
Q 004760 542 FTSIGNTDAVSFGSGHLRRKVLSKSD-----GKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSN---LSKAMLWTPA 613 (732)
Q Consensus 542 f~~~~~~d~v~iG~~~~~~~LlivG~-----G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~---l~~~V~f~G~ 613 (732)
.+..|+++|. |++.+.++..+ +++...+...++ ....+.+.|.
T Consensus 298 ----------------~~v~Lv~vg~~~~g~~~~~~~l~~~l-------------~~~v~~in~~~g~~~~~~v~~~~g~ 348 (460)
T cd03788 298 ----------------GKVVLVQIAVPSRTDVPEYQELRREV-------------EELVGRINGKFGTLDWTPVRYLYRS 348 (460)
T ss_pred ----------------CCEEEEEEccCCCcCcHHHHHHHHHH-------------HHHHHHHHhccCCCCceeEEEEeCC
Confidence 1123444543 33333333222 222222222222 2233344564
Q ss_pred --hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCC----EEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHH
Q 004760 614 --TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----VLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNL 687 (732)
Q Consensus 614 --~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlP----VI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL 687 (732)
.+++..+|++||++|+||. .||||++++||||||+| ||+|+.+|..+. +.+|+++++.|+ +++|++|
T Consensus 349 v~~~el~~~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~--~~la~ai 421 (460)
T cd03788 349 LPREELAALYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDI--DEVADAI 421 (460)
T ss_pred CCHHHHHHHHHhccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCH--HHHHHHH
Confidence 5899999999999999998 99999999999999999 999999888877 357999999998 9999999
Q ss_pred HHHhcCH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 688 RYLLKNP-SVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 688 ~~LL~n~-~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
..+++++ +.++.+++++++.+. .|+++.+++++++-+
T Consensus 422 ~~~l~~~~~e~~~~~~~~~~~v~-~~~~~~w~~~~l~~l 459 (460)
T cd03788 422 HRALTMPLEERRERHRKLREYVR-THDVQAWANSFLDDL 459 (460)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHhh
Confidence 9999855 778888888888886 599999999998654
No 73
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.87 E-value=2e-20 Score=199.66 Aligned_cols=310 Identities=19% Similarity=0.132 Sum_probs=198.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH-HhCCcEEEEcCCCc--------------h---
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEP--------------S--- 305 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el-~~~gI~v~~~~~~~--------------~--- 305 (732)
||+++..+.+ |......+||++|.+.||+|++++. ..+ ....+ ...|+++....... .
T Consensus 2 ~i~~~~g~~~--g~~~~~~~La~~L~~~g~eV~vv~~-~~~-~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 77 (348)
T TIGR01133 2 KVVLAAGGTG--GHIFPALAVAEELIKRGVEVLWLGT-KRG-LEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLK 77 (348)
T ss_pred eEEEEeCccH--HHHhHHHHHHHHHHhCCCEEEEEeC-CCc-chhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHH
Confidence 6777766554 5555778999999999999999973 222 22233 34688776554321 0
Q ss_pred -------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHh-hhhhccccEEEEecHHhHHHhh
Q 004760 306 -------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRA-KLVLDRVKLLVFLSESQTKQWL 377 (732)
Q Consensus 306 -------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~-~~~l~r~~~li~vS~~~~~~~~ 377 (732)
+.++.+||+||+++.... +...++....+.+.++ ++. ..+.... +.....++.++++++.....
T Consensus 78 ~~~~l~~~i~~~~pDvVi~~~~~~~--~~~~~~~~~~~~p~v~---~~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~-- 149 (348)
T TIGR01133 78 AVFQARRILKKFKPDAVIGFGGYVS--GPAGLAAKLLGIPLFH---HEQ-NAVPGLTNKLLSRFAKKVLISFPGAKDH-- 149 (348)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccc--HHHHHHHHHcCCCEEE---ECC-CCCccHHHHHHHHHhCeeEECchhHhhc--
Confidence 233678999999865432 2223333444544332 111 1111111 11222366777777764221
Q ss_pred hHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCC
Q 004760 378 TWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKG 457 (732)
Q Consensus 378 ~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG 457 (732)
.. ..+|+|+++...+.+... +++++++++.++|+++|+....|+
T Consensus 150 -----------~~--------------~~~i~n~v~~~~~~~~~~-----------~~~~~~~~~~~~i~~~gg~~~~~~ 193 (348)
T TIGR01133 150 -----------FE--------------AVLVGNPVRQEIRSLPVP-----------RERFGLREGKPTILVLGGSQGAKI 193 (348)
T ss_pred -----------CC--------------ceEEcCCcCHHHhcccch-----------hhhcCCCCCCeEEEEECCchhHHH
Confidence 01 168999998765533211 235788888889999998777888
Q ss_pred HHH-HHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccC
Q 004760 458 QLL-LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (732)
Q Consensus 458 ~d~-LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~ 536 (732)
+.. +++|++.+.+....
T Consensus 194 ~~~~l~~a~~~l~~~~~~-------------------------------------------------------------- 211 (348)
T TIGR01133 194 LNELVPKALAKLAEKGIQ-------------------------------------------------------------- 211 (348)
T ss_pred HHHHHHHHHHHHhhcCcE--------------------------------------------------------------
Confidence 654 55788776432111
Q ss_pred CCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhh
Q 004760 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (732)
Q Consensus 537 ~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~d 616 (732)
-+++.|++.. ..++..+ +.+++.+.+.|. .. +
T Consensus 212 ------------------------~~~~~g~~~~-~~l~~~~---------------------~~~~l~~~v~~~-~~-~ 243 (348)
T TIGR01133 212 ------------------------IVHQTGKNDL-EKVKNVY---------------------QELGIEAIVTFI-DE-N 243 (348)
T ss_pred ------------------------EEEECCcchH-HHHHHHH---------------------hhCCceEEecCc-cc-C
Confidence 1233454432 3333322 223665566676 33 8
Q ss_pred HHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC-------hhhhhccCceEEEECCCCCcHHHHHHHHHH
Q 004760 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG-------TKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (732)
Q Consensus 617 v~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG-------~~EiVe~g~~Gll~~~~d~~~e~La~aL~~ 689 (732)
+.++|++||++|.+| .|++++|||++|+|+|+++.++ ..+++.++.+|++++++|.++++|+++|.+
T Consensus 244 ~~~~l~~ad~~v~~~------g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 244 MAAAYAAADLVISRA------GASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred HHHHHHhCCEEEECC------ChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 999999999999765 2789999999999999998754 346788888999998887445999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 004760 690 LLKNPSVRERMAMEGRKKVERMYLKKHMY 718 (732)
Q Consensus 690 LL~n~~~r~~m~~~~r~~v~~~ys~~~~~ 718 (732)
+++|++.+++|++++++.+++ +..++++
T Consensus 318 ll~~~~~~~~~~~~~~~~~~~-~~~~~i~ 345 (348)
T TIGR01133 318 LLLDPANLEAMAEAARKLAKP-DAAKRIA 345 (348)
T ss_pred HHcCHHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 999999999999999876543 4444443
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.87 E-value=3.3e-20 Score=209.02 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=180.2
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCC
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~ 441 (732)
.+.+.|.+......+...|... ......+.-+. .......+.++|||+|++.|.+.......+.....+|+.++
T Consensus 184 ~dligF~t~~~~~~Fl~~~~~~-l~~~~~~~~~~--~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~--- 257 (456)
T TIGR02400 184 YDLVGFQTYDDARNFLSAVSRE-LGLETLPNGVE--SGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK--- 257 (456)
T ss_pred CCEEEECCHHHHHHHHHHHHHH-hCCcccCCceE--ECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---
Confidence 7889999888877666655321 11111111111 22345567899999999998654221110111235677663
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccc
Q 004760 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (732)
Q Consensus 442 ~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~ 521 (732)
+..+|+++||+.+.||++.+++|++.+.++.|+. +
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~------------------------~--------------------- 292 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEW------------------------R--------------------- 292 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccc------------------------c---------------------
Confidence 5678999999999999999999999998887751 0
Q ss_pred hhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEec-----cCchhhhhHhhhhhccCCCCCChhhHHHHHH
Q 004760 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK-----SDGKQQQALKILIGSVGSKSNKVPYVKEILE 596 (732)
Q Consensus 522 ~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~Lliv-----G~G~~~~~Lk~li~~~G~~~~~~~y~k~il~ 596 (732)
.+..++.+ |+++..+.++..+. ++..
T Consensus 293 ------------------------------------~~v~Lv~v~~p~rg~~~~~~~l~~~i~-------------~lv~ 323 (456)
T TIGR02400 293 ------------------------------------GKVVLVQIAVPSRGDVPEYQQLRRQVE-------------ELVG 323 (456)
T ss_pred ------------------------------------CceEEEEEecCCccCchHHHHHHHHHH-------------HHHH
Confidence 01123333 34455555544442 1211
Q ss_pred HHHhcCCCCC--cEEEc-cc--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCC----EEEcCCCChhhhhccC
Q 004760 597 FLSQHSNLSK--AMLWT-PA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----VLGTDAGGTKEIVEHN 667 (732)
Q Consensus 597 ~l~~~l~l~~--~V~f~-G~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlP----VI~td~gG~~EiVe~g 667 (732)
.+...++..+ .+++. +. .+++..+|++||++|+||. .||||+|++||||||+| ||+|+.+|..+.+.
T Consensus 324 ~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~-- 399 (456)
T TIGR02400 324 RINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN-- 399 (456)
T ss_pred HHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC--
Confidence 1211111111 14444 33 4899999999999999997 99999999999999999 99999988888875
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 668 VTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 668 ~~Gll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+|+++++.|+ +++|++|.++++ +++.++++.+..++.+.+ |++..++++|++-+.
T Consensus 400 -~gllVnP~d~--~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 400 -GALLVNPYDI--DGMADAIARALTMPLEEREERHRAMMDKLRK-NDVQRWREDFLSDLN 455 (456)
T ss_pred -CcEEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhh
Confidence 6999999998 999999999998 667888888889999875 999999999987653
No 75
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.81 E-value=7.5e-18 Score=183.62 Aligned_cols=330 Identities=13% Similarity=0.078 Sum_probs=200.8
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC--CCChhHHH------------------hCCcEEEEc
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--GGLMPELA------------------RRKIKVLED 300 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~--g~l~~el~------------------~~gI~v~~~ 300 (732)
+.+||++++.+. .+|-......|+.+|.+.|++|++++-... .+....+. ..+......
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 346888888776 558888899999999999998766652221 11111110 001000000
Q ss_pred CCC---------ch---hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEe
Q 004760 301 RGE---------PS---FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFL 368 (732)
Q Consensus 301 ~~~---------~~---~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~v 368 (732)
... .. +.++.+||+||++..... +..+......+.+ ++.++.. +.....-...+++.+++.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~--~~~~~~~~~~~ip-~~~~~td----~~~~~~~~~~~ad~i~~~ 154 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIA--VPELKKQTGISIP-TYNVLTD----FCLHKIWVHREVDRYFVA 154 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHH--HHHHHHhcCCCCC-eEEEeCC----CCCCcccccCCCCEEEEC
Confidence 000 00 333789999998754332 2223333333344 4433311 111111123457889999
Q ss_pred cHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCE-EEE
Q 004760 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDM-LVL 447 (732)
Q Consensus 369 S~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~-lil 447 (732)
|+..... . .+.+..+ ++ +.++.+.++. .|.+... +..+|+++|++++.. +++
T Consensus 155 s~~~~~~----l----~~~gi~~-------~k----i~v~G~p~~~-~f~~~~~-------~~~~~~~~~l~~~~~~il~ 207 (380)
T PRK13609 155 TDHVKKV----L----VDIGVPP-------EQ----VVETGIPIRS-SFELKIN-------PDIIYNKYQLCPNKKILLI 207 (380)
T ss_pred CHHHHHH----H----HHcCCCh-------hH----EEEECcccCh-HHcCcCC-------HHHHHHHcCCCCCCcEEEE
Confidence 8875332 2 2233322 11 2344333332 2221111 134688899987654 566
Q ss_pred EEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhc
Q 004760 448 SLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQ 527 (732)
Q Consensus 448 ~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~ 527 (732)
+.|+....|+++.+++++... ++
T Consensus 208 ~~G~~~~~k~~~~li~~l~~~----~~----------------------------------------------------- 230 (380)
T PRK13609 208 MAGAHGVLGNVKELCQSLMSV----PD----------------------------------------------------- 230 (380)
T ss_pred EcCCCCCCcCHHHHHHHHhhC----CC-----------------------------------------------------
Confidence 678888889999988887521 22
Q ss_pred cCCcccccCCCCCcccccCCCCccccCCcccceeEEec-cCc-hhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCC
Q 004760 528 LNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK-SDG-KQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS 605 (732)
Q Consensus 528 ~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~Lliv-G~G-~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~ 605 (732)
.+++++ |++ ..++.++.++ +. ..
T Consensus 231 --------------------------------~~~viv~G~~~~~~~~l~~~~---------------------~~--~~ 255 (380)
T PRK13609 231 --------------------------------LQVVVVCGKNEALKQSLEDLQ---------------------ET--NP 255 (380)
T ss_pred --------------------------------cEEEEEeCCCHHHHHHHHHHH---------------------hc--CC
Confidence 123333 432 2333333332 22 22
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC-CCCh----hhhhccCceEEEECCCCCcH
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD-AGGT----KEIVEHNVTGLLHPPGHPGA 680 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td-~gG~----~EiVe~g~~Gll~~~~d~~~ 680 (732)
++|+|+|+++++.++|++||++|. ++.|++++||||||+|||+++ .+|. .+++.+ +|+.+...|.
T Consensus 256 ~~v~~~g~~~~~~~l~~~aD~~v~------~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~~~~~~-- 325 (380)
T PRK13609 256 DALKVFGYVENIDELFRVTSCMIT------KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAVVIRDD-- 325 (380)
T ss_pred CcEEEEechhhHHHHHHhccEEEe------CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEEEECCH--
Confidence 689999999999999999999883 346899999999999999986 4542 234443 3444445666
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 681 QVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
++++++|.++++|++.+++|++++++... .++++.+++.+++++..+
T Consensus 326 ~~l~~~i~~ll~~~~~~~~m~~~~~~~~~-~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 326 EEVFAKTEALLQDDMKLLQMKEAMKSLYL-PEPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHhhhhh
Confidence 99999999999999999999999887654 489999999999988664
No 76
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.81 E-value=6.5e-18 Score=201.63 Aligned_cols=262 Identities=13% Similarity=0.142 Sum_probs=182.2
Q ss_pred cccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCC
Q 004760 361 RVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLT 440 (732)
Q Consensus 361 r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~ 440 (732)
..+.+-|.+......+...|... ++.......+..+.....+.+||||+|++.|.+.......+.....+|+.++
T Consensus 203 ~aDligF~t~~y~r~Fl~~~~r~---l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~-- 277 (797)
T PLN03063 203 TADLIGFHTYDFARHFLSACTRI---LGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA-- 277 (797)
T ss_pred cCCEEEeCCHHHHHHHHHHHHHH---hCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC--
Confidence 37888998888766555544221 1211111112223344567899999999988643221110111234555554
Q ss_pred CCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCccccccc
Q 004760 441 DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSV 520 (732)
Q Consensus 441 ~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~ 520 (732)
+..+|+++||+.+.||++.+|+|++.+.++.|+. +|+.
T Consensus 278 -~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~------------------------~~kv----------------- 315 (797)
T PLN03063 278 -GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEW------------------------RDKV----------------- 315 (797)
T ss_pred -CCeEEEEecccccccCHHHHHHHHHHHHHhCccc------------------------cCcE-----------------
Confidence 5678999999999999999999999999888861 1111
Q ss_pred chhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEec-----cCchhhhhHhhhhhccCCCCCChhhHHHHH
Q 004760 521 SSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK-----SDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (732)
Q Consensus 521 ~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~Lliv-----G~G~~~~~Lk~li~~~G~~~~~~~y~k~il 595 (732)
.|+.+ |+|+..+.++..+... .
T Consensus 316 ----------------------------------------vLvqia~psr~~~~~y~~l~~~v~~l-------------~ 342 (797)
T PLN03063 316 ----------------------------------------MLVQIAVPTRNDVPEYQKLKSQVHEL-------------V 342 (797)
T ss_pred ----------------------------------------EEEEEecCCCCchHHHHHHHHHHHHH-------------H
Confidence 11111 3455555555554322 1
Q ss_pred HHHHhcCCCC--CcEEEcc-c--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCC----EEEcCCCChhhhhcc
Q 004760 596 EFLSQHSNLS--KAMLWTP-A--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----VLGTDAGGTKEIVEH 666 (732)
Q Consensus 596 ~~l~~~l~l~--~~V~f~G-~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlP----VI~td~gG~~EiVe~ 666 (732)
..+...++.. ..|++++ . .+++..+|++||+||+||. .||||++++||||||+| +|+|+.+|..+.+
T Consensus 343 g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l-- 418 (797)
T PLN03063 343 GRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL-- 418 (797)
T ss_pred HHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCcc--ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--
Confidence 1121111111 1233332 2 3789999999999999997 99999999999999999 9999999999876
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 667 NVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 667 g~~Gll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
+.+|+++++.|+ +++|++|..++. +++.++++.+..++.+.. +++..+++.|++.|+.+.
T Consensus 419 ~~~allVnP~D~--~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~-~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 419 GAGALLVNPWNI--TEVSSAIKEALNMSDEERETRHRHNFQYVKT-HSAQKWADDFMSELNDII 479 (797)
T ss_pred cCCeEEECCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh-CCHHHHHHHHHHHHHHHh
Confidence 347999999998 999999999999 778888888888988875 999999999999888765
No 77
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=9.6e-17 Score=181.31 Aligned_cols=363 Identities=18% Similarity=0.165 Sum_probs=235.7
Q ss_pred eEEEEeCCC----CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh---------------------------
Q 004760 244 KFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--------------------------- 292 (732)
Q Consensus 244 kIllI~h~l----s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~--------------------------- 292 (732)
||++++.|. ..||-.-.+-.|.++|++.|++|.|+.+.-. .+..+...
T Consensus 2 ~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 2 KILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYP-KVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred cceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCch-hhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 466666665 5699999999999999999999999975432 22211111
Q ss_pred CCcEEEEcCC----Cc----h------------hh-------h--h--cCccEEEeCCchhhHHHHHHHHhhc--CCCcc
Q 004760 293 RKIKVLEDRG----EP----S------------FK-------T--S--MKADLVIAGSAVCATWIDQYITRFP--AGGSQ 339 (732)
Q Consensus 293 ~gI~v~~~~~----~~----~------------~~-------~--~--~k~DlVia~Sav~~~~i~~~i~~~~--~~~~~ 339 (732)
.++++..... .+ . |. . . ..|||||+|+-.++ .++.++.... .-..+
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~-L~~~~lk~~~~~~~~i~ 159 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTG-LLPAYLKQRYRSGYIIP 159 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHH-HHHHHHhhcccccccCC
Confidence 0122221110 00 0 11 1 1 36999988864332 2333443321 11233
Q ss_pred EEEEEeec------h-----------hHhH----------HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCc
Q 004760 340 VVWWIMEN------R-----------REYF----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPA 392 (732)
Q Consensus 340 ivw~i~e~------r-----------~~~~----------~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~ 392 (732)
.+..||.. + ..|. ...+..+...+.+.++|..-+.. ++..+.+. +...
T Consensus 160 tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~E--i~t~~~g~--gl~g- 234 (487)
T COG0297 160 TVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGE--IYTPEYGE--GLEG- 234 (487)
T ss_pred eEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHh--hccccccc--cchh-
Confidence 45555521 1 0111 11233344488899999886432 11111111 1100
Q ss_pred cccccCCCccceEEeecCCCCCCCCCchhhH-----------HHhHHhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHH
Q 004760 393 VVPLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQL 459 (732)
Q Consensus 393 ~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~-----------ekr~~~r~~~R~~lgl~~--~~~lil~vGri~~~KG~d 459 (732)
+-... ...+.+|.||+|...+.|+... .++...+..+++++|++. +.+++.++||+..+||+|
T Consensus 235 ---~l~~~-~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~d 310 (487)
T COG0297 235 ---LLSWR-SGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLD 310 (487)
T ss_pred ---hhhhc-cccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchh
Confidence 00001 1356899999999887764321 124456788999999984 568999999999999999
Q ss_pred HHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCC
Q 004760 460 LLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSP 539 (732)
Q Consensus 460 ~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p 539 (732)
++++|+..+.++.-
T Consensus 311 l~~~~i~~~l~~~~------------------------------------------------------------------ 324 (487)
T COG0297 311 LLLEAIDELLEQGW------------------------------------------------------------------ 324 (487)
T ss_pred HHHHHHHHHHHhCc------------------------------------------------------------------
Confidence 99999999976642
Q ss_pred CcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchh-hHH
Q 004760 540 SLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT-RVA 618 (732)
Q Consensus 540 ~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~-dv~ 618 (732)
+++++|.| ...++.. + ..+++.+.. .-....++.+ -..
T Consensus 325 ---------------------~~vilG~g--d~~le~~----------------~-~~la~~~~~-~~~~~i~~~~~la~ 363 (487)
T COG0297 325 ---------------------QLVLLGTG--DPELEEA----------------L-RALASRHPG-RVLVVIGYDEPLAH 363 (487)
T ss_pred ---------------------eEEEEecC--cHHHHHH----------------H-HHHHHhcCc-eEEEEeeecHHHHH
Confidence 46677777 2222222 2 222222222 2333445554 366
Q ss_pred HHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--------CceEEEECCCCCcHHHHHHHHHHH
Q 004760 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--------NVTGLLHPPGHPGAQVLAQNLRYL 690 (732)
Q Consensus 619 ~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~--------g~~Gll~~~~d~~~e~La~aL~~L 690 (732)
.+|+.||++++||+ .|++|++-++||.+|+++|+...||+++.|.+ ..+|+++.+.++ +.|+.+|++.
T Consensus 364 ~i~agaD~~lmPSr--fEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~--~~l~~al~rA 439 (487)
T COG0297 364 LIYAGADVILMPSR--FEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNP--DHLANALRRA 439 (487)
T ss_pred HHHhcCCEEEeCCc--CcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCH--HHHHHHHHHH
Confidence 89999999999998 99999999999999999999999999998874 479999998877 9999999866
Q ss_pred hc---CHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 691 LK---NPSV-RERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 691 L~---n~~~-r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
+. ++.. ++.+..++.. ..|+|+..+++|.++|+.+...
T Consensus 440 ~~~y~~~~~~w~~~~~~~m~---~d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 440 LVLYRAPPLLWRKVQPNAMG---ADFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred HHHhhCCHHHHHHHHHhhcc---cccCchhHHHHHHHHHHHHhcc
Confidence 53 4444 7777777765 5799999999999999998764
No 78
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.78 E-value=1.6e-17 Score=197.08 Aligned_cols=259 Identities=17% Similarity=0.231 Sum_probs=175.9
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCC
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~ 441 (732)
.+.+-|.+......+...|... .........+.+ .+....+.++|||+|+..|.+.......+.....+|+.+ .
T Consensus 190 ~Dligf~t~~~~r~Fl~~~~~~-l~~~~~~~~~~~--~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~ 263 (726)
T PRK14501 190 ADLIGFHTYDYVRHFLSSVLRV-LGYETELGEIRL--GGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---R 263 (726)
T ss_pred CCeEEeCCHHHHHHHHHHHHHH-cCCccCCCeEEE--CCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---C
Confidence 7778888877655455555321 111111111122 233345789999999999876432111111223455554 3
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccc
Q 004760 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (732)
Q Consensus 442 ~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~ 521 (732)
+..+|+++||+.+.||+..+|+|+..+.++.|+. +
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~------------------------~--------------------- 298 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEW------------------------R--------------------- 298 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccc------------------------c---------------------
Confidence 5679999999999999999999999998887751 1
Q ss_pred hhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEecc----Cc-hhhhhHhhhhhccCCCCCChhhHHHHHH
Q 004760 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKS----DG-KQQQALKILIGSVGSKSNKVPYVKEILE 596 (732)
Q Consensus 522 ~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG----~G-~~~~~Lk~li~~~G~~~~~~~y~k~il~ 596 (732)
.+.+++++| .| +..++++..+ .++..
T Consensus 299 ------------------------------------~~v~lv~v~~~sr~~~~~~~~l~~~~-------------~~~v~ 329 (726)
T PRK14501 299 ------------------------------------GKVRLVQVAVPSRTGVPQYQEMKREI-------------DELVG 329 (726)
T ss_pred ------------------------------------CCEEEEEEecCCCcchHHHHHHHHHH-------------HHHHH
Confidence 112344444 22 3333444333 22222
Q ss_pred HHHhcCCC---CCcEEEccc--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEcCCCChhhhhcc
Q 004760 597 FLSQHSNL---SKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGTDAGGTKEIVEH 666 (732)
Q Consensus 597 ~l~~~l~l---~~~V~f~G~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~td~gG~~EiVe~ 666 (732)
.+...++. ...+.|.+. .+++..+|++||++++||. .||||++++||||| |+||++..+|+..+++
T Consensus 330 ~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~-- 405 (726)
T PRK14501 330 RINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA-- 405 (726)
T ss_pred HHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEeccc--ccccCcccceEEEEcCCCCceEEEecccchhHHhC--
Confidence 22222222 223456664 4899999999999999997 99999999999999 5577778888888875
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 667 NVTGLLHPPGHPGAQVLAQNLRYLLKNP-SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 667 g~~Gll~~~~d~~~e~La~aL~~LL~n~-~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
.|+++++.|+ +++|++|.+++.++ +.+.+...++++.+. .|+|+.++++|++.|+++.
T Consensus 406 --~~llv~P~d~--~~la~ai~~~l~~~~~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 406 --EALLVNPNDI--EGIAAAIKRALEMPEEEQRERMQAMQERLR-RYDVHKWASDFLDELREAA 464 (726)
T ss_pred --cCeEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 3899999998 99999999999864 455555567888876 6999999999999998874
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.77 E-value=3.5e-17 Score=179.57 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=153.0
Q ss_pred ccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCC
Q 004760 360 DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGL 439 (732)
Q Consensus 360 ~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl 439 (732)
..++.+++.|+..... . ...+..+ + .+.+++++++...+.+... +..+|+++|+
T Consensus 149 ~~~d~~~~~s~~~~~~----l----~~~g~~~-------~----ki~v~g~~v~~~f~~~~~~-------~~~~r~~~gl 202 (382)
T PLN02605 149 KGVTRCFCPSEEVAKR----A----LKRGLEP-------S----QIRVYGLPIRPSFARAVRP-------KDELRRELGM 202 (382)
T ss_pred CCCCEEEECCHHHHHH----H----HHcCCCH-------H----HEEEECcccCHhhccCCCC-------HHHHHHHcCC
Confidence 3477788888775332 2 2334332 1 2366777777544332211 2567899999
Q ss_pred CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh----CCCCchhhhhhccccccccccccccccccccccccccccccCcc
Q 004760 440 TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ----EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (732)
Q Consensus 440 ~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~----~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~ 515 (732)
+++.++|+++|+....|++..+++++..+... .++
T Consensus 203 ~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~----------------------------------------- 241 (382)
T PLN02605 203 DEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPI----------------------------------------- 241 (382)
T ss_pred CCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCC-----------------------------------------
Confidence 99999999999999999999999998764311 111
Q ss_pred cccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchh-hhhHhhhhhccCCCCCChhhHHHH
Q 004760 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ-QQALKILIGSVGSKSNKVPYVKEI 594 (732)
Q Consensus 516 ~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~-~~~Lk~li~~~G~~~~~~~y~k~i 594 (732)
...++++|++.. ++.++..
T Consensus 242 -------------------------------------------~~~~vi~G~~~~~~~~L~~~----------------- 261 (382)
T PLN02605 242 -------------------------------------------GQVVVICGRNKKLQSKLESR----------------- 261 (382)
T ss_pred -------------------------------------------ceEEEEECCCHHHHHHHHhh-----------------
Confidence 012456666531 2222211
Q ss_pred HHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC------CChhhhhccCc
Q 004760 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA------GGTKEIVEHNV 668 (732)
Q Consensus 595 l~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~------gG~~EiVe~g~ 668 (732)
....+|+|+|++++++++|++||++|.++ .|++++||||||+|+|+++. |+...++ ++.
T Consensus 262 --------~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g 326 (382)
T PLN02605 262 --------DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNG 326 (382)
T ss_pred --------cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCC
Confidence 12346999999999999999999999755 47899999999999999984 4454444 445
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 669 TGLLHPPGHPGAQVLAQNLRYLLKN-PSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 669 ~Gll~~~~d~~~e~La~aL~~LL~n-~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
.|++. +|+ ++++++|.+++.| ++.+++|++++++.... .+.+.+++.+.+..
T Consensus 327 ~g~~~--~~~--~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~-~a~~~i~~~l~~~~ 379 (382)
T PLN02605 327 FGAFS--ESP--KEIARIVAEWFGDKSDELEAMSENALKLARP-EAVFDIVHDLHELV 379 (382)
T ss_pred ceeec--CCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHh
Confidence 67654 565 9999999999998 99999999999987753 67777777666554
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=3.5e-17 Score=160.03 Aligned_cols=69 Identities=46% Similarity=0.672 Sum_probs=62.1
Q ss_pred CCCCcEEEccc---hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEE
Q 004760 603 NLSKAMLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLH 673 (732)
Q Consensus 603 ~l~~~V~f~G~---~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~ 673 (732)
+..++|.++|+ .+++..++++||++++||. .|++|++++|||+||+|+|+|+.++..|++.++.+|+++
T Consensus 158 ~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 158 LLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred CCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 56689999997 3667777777999999998 899999999999999999999999999999988899874
No 81
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=2.8e-16 Score=158.35 Aligned_cols=202 Identities=31% Similarity=0.528 Sum_probs=159.9
Q ss_pred EEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCC--EEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhh
Q 004760 405 VAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQD--MLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRK 482 (732)
Q Consensus 405 v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~--~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~ 482 (732)
+..++++++...+.+. ..++..+. ..++++|++.+.||++.+++++..+.+..+.
T Consensus 174 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~-------- 230 (381)
T COG0438 174 IVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPD-------- 230 (381)
T ss_pred ceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCC--------
Confidence 3788999988877642 11222333 6899999999999999999999999665442
Q ss_pred ccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeE
Q 004760 483 SRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKV 562 (732)
Q Consensus 483 ~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~L 562 (732)
..+
T Consensus 231 -----------------------------------------------------------------------------~~~ 233 (381)
T COG0438 231 -----------------------------------------------------------------------------IKL 233 (381)
T ss_pred -----------------------------------------------------------------------------eEE
Confidence 245
Q ss_pred EeccCchhh-hhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchh--hHHHHHHHcCEEEEccCCCCCCCc
Q 004760 563 LSKSDGKQQ-QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFG 639 (732)
Q Consensus 563 livG~G~~~-~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~--dv~~lysaADv~V~pS~~~~Egfg 639 (732)
+++|.+... ..+.. +.+.++..++|.|+|... ++..+++.||++++||. .|+||
T Consensus 234 ~~~g~~~~~~~~~~~---------------------~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~ 290 (381)
T COG0438 234 VIVGDGPERREELEK---------------------LAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFG 290 (381)
T ss_pred EEEcCCCccHHHHHH---------------------HHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccch
Confidence 666666542 22222 223335567899999865 78889999999999998 69999
Q ss_pred HHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 004760 640 RVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYK 719 (732)
Q Consensus 640 ~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~ 719 (732)
++++|||++|+|||+++.++..|++.++.+|++++..+. +++++++..++++++.++.+...+++.+.+.|+|+.+.+
T Consensus 291 ~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (381)
T COG0438 291 LVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDV--EELADALEQLLEDPELREELGEAARERVEEEFSWERIAE 368 (381)
T ss_pred HHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999998777886666655 999999999999998888888867777767899999999
Q ss_pred HHHHHHHHhhcC
Q 004760 720 KLSQVIYKCMKP 731 (732)
Q Consensus 720 ~~~ev~~~~l~~ 731 (732)
.+.+++..+...
T Consensus 369 ~~~~~~~~~~~~ 380 (381)
T COG0438 369 QLLELYEELLAE 380 (381)
T ss_pred HHHHHHHHHHhc
Confidence 999999887653
No 82
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.73 E-value=3.5e-16 Score=172.58 Aligned_cols=117 Identities=13% Similarity=0.140 Sum_probs=96.8
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CC----hhhhhccCceEEEECCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GG----TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG----~~EiVe~g~~Gll~~~~d 677 (732)
+..++|.|+|++++++++|++||++|. ++.|+++.||||+|+|+|+++. +| ...++.+...|++. ++
T Consensus 253 ~~~~~v~~~G~~~~~~~~~~~aDl~I~------k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~--~~ 324 (391)
T PRK13608 253 KSNENVLILGYTKHMNEWMASSQLMIT------KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIA--DT 324 (391)
T ss_pred ccCCCeEEEeccchHHHHHHhhhEEEe------CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEe--CC
Confidence 334579999999999999999999995 3468999999999999999975 33 23344555567654 35
Q ss_pred CcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 678 PGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
. ++++++|.++++|++.+++|++++++... .|+++.+++.+.+++....+
T Consensus 325 ~--~~l~~~i~~ll~~~~~~~~m~~~~~~~~~-~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 325 P--EEAIKIVASLTNGNEQLTNMISTMEQDKI-KYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred H--HHHHHHHHHHhcCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhhhhhh
Confidence 5 89999999999999999999999998766 49999999999999987654
No 83
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.72 E-value=8.3e-16 Score=168.07 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=83.8
Q ss_pred CcEEEccch--hhHHHHHHHcCEEEEccCC---CCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcH
Q 004760 606 KAMLWTPAT--TRVASLYSAADVYVINSQG---LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGA 680 (732)
Q Consensus 606 ~~V~f~G~~--~dv~~lysaADv~V~pS~~---~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~ 680 (732)
++|+|+|++ +++..+|+.||++++|+.. ..+++|++++||||||+|||+|+.+ ++++....+++. .+|+
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~---~~~~~~~~~~~~-~~d~-- 327 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP---EVRRYEDEVVLI-ADDP-- 327 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH---HHHhhcCcEEEe-CCCH--
Confidence 689999976 7999999999999999861 1346899999999999999999864 445544434444 4566
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 681 QVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
++++++|..++.++...... .+++ +.+.|||+..++++.+.+..
T Consensus 328 ~~~~~ai~~~l~~~~~~~~~--~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 328 EEFVAAIEKALLEDGPARER--RRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HHHHHHHHHHHhcCCchHHH--HHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 99999999976544322211 1222 44569999999999977654
No 84
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=9.8e-18 Score=181.71 Aligned_cols=331 Identities=17% Similarity=0.148 Sum_probs=241.1
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchh--------hHHH-hHHhHHH
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEK--------MREK-RNLLRDS 432 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~--------~~ek-r~~~r~~ 432 (732)
++.+.++|+.+. .+++|. +..+| + .+.|||+|+.+|+... .++| ...+|.+
T Consensus 253 AhVFTTVSeITa------~EAeHl-LkRKP--------D-----~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGH 312 (692)
T KOG3742|consen 253 AHVFTTVSEITA------LEAEHL-LKRKP--------D-----VITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGH 312 (692)
T ss_pred hhhhhhHHHHHH------HHHHHH-HhcCC--------C-----eeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334677777763 456665 45556 2 5889999999997621 1122 1225566
Q ss_pred HHHHhCCCCCCEE-EEEEecCC-CCCCHHHHHHHHHHhHHhCCCCchhhhhhcccccccccccccccccccccccccccc
Q 004760 433 VRKEMGLTDQDML-VLSLSSIN-PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDD 510 (732)
Q Consensus 433 ~R~~lgl~~~~~l-il~vGri~-~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~ 510 (732)
+...++++-|..+ ++..||.+ ..||.|++|||+++|.......++++++..++|++++++.+....|+|+++.+++.+
T Consensus 313 F~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~kqL~d 392 (692)
T KOG3742|consen 313 FHGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRKQLWD 392 (692)
T ss_pred ccccccccccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHHHHHH
Confidence 6667778777665 77889998 799999999999999998888788999999999999999999999999999999999
Q ss_pred ccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhh
Q 004760 511 VGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPY 590 (732)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y 590 (732)
+...|....--+.+++-+.. +.|++.+-++.+|.+-+. +.++ ..+++.+..+.......+..++.
T Consensus 393 tv~~Vk~~~Gkrifd~~l~g------~lPd~~ell~~~d~v~lK-----r~i~----a~~r~slPPv~THNm~dDa~Dpi 457 (692)
T KOG3742|consen 393 TVNEVKEKVGKRIFDHCLRG------ELPDLDELLDKDDLVLLK-----RCIF----ALQRQSLPPVCTHNMIDDANDPI 457 (692)
T ss_pred HHHHHHHHHHHHHHHHHhcc------cCCChHHhhChhHHHHHH-----HHHH----HhccCCCCCceeccccccccchH
Confidence 99988887777888877766 455666666666665321 1111 12334555555555555555566
Q ss_pred HHHHHHHHHhcCCCCCc--EEEccch---------hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC
Q 004760 591 VKEILEFLSQHSNLSKA--MLWTPAT---------TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (732)
Q Consensus 591 ~k~il~~l~~~l~l~~~--V~f~G~~---------~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG 659 (732)
+..+...---+ .-.++ |+|++.- -|+.++.+.|++.|+||. +|+||.+..|+-.+|+|-|+||.+|
T Consensus 458 L~~iRr~~LFN-~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSG 534 (692)
T KOG3742|consen 458 LSSIRRIGLFN-SPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSG 534 (692)
T ss_pred HHHhHhhhccc-CcccceEEEecHHHhccCCCCcCCCHHHHhccccccccccc--cCCCCCCchheEEeccccccccccc
Confidence 65555432222 22344 5666521 389999999999999998 9999999999999999999999988
Q ss_pred hh----hhhcc-CceEEEE-----CCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 660 TK----EIVEH-NVTGLLH-----PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 660 ~~----EiVe~-g~~Gll~-----~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
.. |.|++ ...|+.+ ...|.++++|++.|..+.+.......++++..++..+..+|+.+...|.+.-..++
T Consensus 535 FGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~~F~~qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 535 FGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMYEFCKQSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred hhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 54 45543 2466654 22344569999999998886665566677778889999999999999988766655
Q ss_pred c
Q 004760 730 K 730 (732)
Q Consensus 730 ~ 730 (732)
+
T Consensus 615 ~ 615 (692)
T KOG3742|consen 615 S 615 (692)
T ss_pred H
Confidence 3
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.69 E-value=4.5e-15 Score=161.27 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=79.4
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc-----------------CCCChhhhhccCc--eEEEECC
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-----------------DAGGTKEIVEHNV--TGLLHPP 675 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t-----------------d~gG~~EiVe~g~--~Gll~~~ 675 (732)
+++..+|++||++|++| |.+++|||+||+|+|++ +.+++++++.++. .+++.+.
T Consensus 253 ~~~~~~~~~aDl~v~~s-------G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (380)
T PRK00025 253 GQKREAMAAADAALAAS-------GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEE 325 (380)
T ss_pred ccHHHHHHhCCEEEECc-------cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCC
Confidence 58999999999999977 67888999999999987 5667778887653 4455555
Q ss_pred CCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 676 GHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
.++ +.+++.+.++++|++.+++|++++.+..+. . ....++++.+.+.+.+
T Consensus 326 ~~~--~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~-~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 326 ATP--EKLARALLPLLADGARRQALLEGFTELHQQ-L-RCGADERAAQAVLELL 375 (380)
T ss_pred CCH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-h-CCCHHHHHHHHHHHHh
Confidence 555 999999999999999999999987555443 2 2334555555555443
No 86
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.69 E-value=1.8e-17 Score=187.95 Aligned_cols=330 Identities=16% Similarity=0.148 Sum_probs=191.5
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhh-HHHh----HHhHHHHHHH
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM-REKR----NLLRDSVRKE 436 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~-~ekr----~~~r~~~R~~ 436 (732)
++.+.++|+.+... | +++ ++.+| + .|+|||+|...|..... +.++ +.+.+.+|..
T Consensus 222 AdvFTTVSeITa~E----a--~~L-L~r~p--------D-----vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~ 281 (633)
T PF05693_consen 222 ADVFTTVSEITAKE----A--EHL-LKRKP--------D-----VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGH 281 (633)
T ss_dssp SSEEEESSHHHHHH----H--HHH-HSS----------S-----EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeeeehhhhHHHH----H--HHH-hCCCC--------C-----EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 78899999998654 3 222 45445 3 58999999998865432 1111 2233334433
Q ss_pred ----hCCCC-CCEEEEEEecCC-CCCCHHHHHHHHHHhHHhCCCCchhhhhhcccccccccccccccccccccccccccc
Q 004760 437 ----MGLTD-QDMLVLSLSSIN-PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDD 510 (732)
Q Consensus 437 ----lgl~~-~~~lil~vGri~-~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~ 510 (732)
+++.. +..+|+..||++ .+||.|++|||+.+|.........++...+++|.+++++.+..-.|+|+++.+++.+
T Consensus 282 f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~ 361 (633)
T PF05693_consen 282 FYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRD 361 (633)
T ss_dssp STT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHH
T ss_pred hcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHH
Confidence 34443 445688899999 899999999999999775444344677888999999999999999999999998888
Q ss_pred ccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhh
Q 004760 511 VGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPY 590 (732)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y 590 (732)
+...+-.-+--+-+...++ ...|+.-+.++..|.+.+ ++.++. .++..+..++.+.-.....++.
T Consensus 362 t~~~i~~~~g~~~~~~~~~------~~~p~~~~~~~~~~~~~l------kr~i~~---~~r~~lPPi~TH~l~d~~~DpI 426 (633)
T PF05693_consen 362 TVDEIQEKIGKRLFESCLS------GRLPDLNELLDKEDIVRL------KRCIFA---LQRNSLPPITTHNLHDDSNDPI 426 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SSS-SHHHCS-HHHHHHH------HHHHHT---T--T----SBSEEETTTTT-HH
T ss_pred HHHHHHHHHHHHHHHHHhC------CCCCChHHhcChhhHHHH------HHHHHH---hccCCCCCeeeeCCCCCccCHH
Confidence 8766665554444444332 113333333333343322 111111 1234455555555444455555
Q ss_pred HHHHHHHHHhcCCCCC--cEEEccch---------hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC
Q 004760 591 VKEILEFLSQHSNLSK--AMLWTPAT---------TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (732)
Q Consensus 591 ~k~il~~l~~~l~l~~--~V~f~G~~---------~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG 659 (732)
+..+.+.--.+ .-.+ +|+|++.- -++.+++.+||+.|+||. +|+||.+.+|+.|+|+|.|+||..|
T Consensus 427 Ln~irr~~L~N-~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITTnLsG 503 (633)
T PF05693_consen 427 LNMIRRLGLFN-NPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITTNLSG 503 (633)
T ss_dssp HHHHHHTT-----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEETTBH
T ss_pred HHHHHhCCCCC-CCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCceeeccchh
Confidence 55554421111 1223 46677632 379999999999999998 9999999999999999999999999
Q ss_pred hhhhhcc-----CceEEEE-CCCCCc----HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 660 TKEIVEH-----NVTGLLH-PPGHPG----AQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 660 ~~EiVe~-----g~~Gll~-~~~d~~----~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
....+.+ ...|+.+ +-.+.+ ++++++.|..+.. +...+..+.. ..+++.+.++|+++...|.+.|..+
T Consensus 504 FG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn-~ae~LS~~~dW~~~~~yY~~Ay~~A 582 (633)
T PF05693_consen 504 FGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRN-RAERLSDLADWKNFGKYYEKAYDLA 582 (633)
T ss_dssp HHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHH-HHHHHGGGGBHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8766653 2356544 333322 3677777777766 4445555444 4456667899999999999999887
Q ss_pred hc
Q 004760 729 MK 730 (732)
Q Consensus 729 l~ 730 (732)
++
T Consensus 583 L~ 584 (633)
T PF05693_consen 583 LR 584 (633)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.65 E-value=5.8e-14 Score=159.23 Aligned_cols=260 Identities=13% Similarity=0.156 Sum_probs=180.3
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCcc-------------------ccccCCCccceEEeecCCCCCCCCCchhh
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAV-------------------VPLSVNDELAFVAGFTCSLNTPTSSPEKM 422 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~-------------------v~l~~n~~~~~v~vIpngvd~~~f~~~~~ 422 (732)
.+.+-|........+...|... +.+...... +.+..++....|.++|+|+|+..|.+...
T Consensus 189 aDliGFqt~~y~~~Fl~~~~r~-lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~ 267 (487)
T TIGR02398 189 CDYIGFHIPRYVENFVDAARGL-MPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALA 267 (487)
T ss_pred CCeEEeCCHHHHHHHHHHHHHH-hCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhc
Confidence 7888888888777666666322 111111100 01122344556789999999998854321
Q ss_pred HHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhcccccccccccccccccccc
Q 004760 423 REKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGR 502 (732)
Q Consensus 423 ~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~ 502 (732)
.+..+-....+|+.++ +..+|++++|+.+.||+...++|+..+.+++|+. +
T Consensus 268 ~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~------------------------~-- 318 (487)
T TIGR02398 268 AASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPEL------------------------L-- 318 (487)
T ss_pred CchHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccc------------------------c--
Confidence 1111112356888888 5679999999999999999999999999999971 1
Q ss_pred ccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCch-----hhhhHhhh
Q 004760 503 GLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK-----QQQALKIL 577 (732)
Q Consensus 503 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~-----~~~~Lk~l 577 (732)
.+..++.+|.+. ..++++..
T Consensus 319 -------------------------------------------------------gkv~Lvqi~~psr~~v~~y~~l~~~ 343 (487)
T TIGR02398 319 -------------------------------------------------------GKVTLVTACVPAASGMTIYDELQGQ 343 (487)
T ss_pred -------------------------------------------------------CceEEEEEeCCCcccchHHHHHHHH
Confidence 122344444432 22222222
Q ss_pred hhccCCCCCChhhHHHHHHHHHhcC---CCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCC--
Q 004760 578 IGSVGSKSNKVPYVKEILEFLSQHS---NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-- 650 (732)
Q Consensus 578 i~~~G~~~~~~~y~k~il~~l~~~l---~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~Gl-- 650 (732)
+ +++...+-..+ +...-+.|.+.. +++..+|+.||+++++|. .|||++|..|+|||+.
T Consensus 344 v-------------~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Eyva~~~~~ 408 (487)
T TIGR02398 344 I-------------EQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEYVAAQGLL 408 (487)
T ss_pred H-------------HHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhHHhhhcCC
Confidence 1 22222222222 344567777764 789999999999999997 9999999999999998
Q ss_pred --CEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 651 --PVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPS-VRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 651 --PVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~-~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
|+|.|..+|..+.+. .+++++|-|. +++|++|..+|..|. .+++.-+..++.+. .++...+++.+++-+..
T Consensus 409 ~GvLILSefaGaa~~l~---~AllVNP~d~--~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~-~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 409 DGVLVLSEFAGAAVELK---GALLTNPYDP--VRMDETIYVALAMPKAEQQARMREMFDAVN-YYDVQRWADEFLAAVSP 482 (487)
T ss_pred CCCEEEeccccchhhcC---CCEEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHhhh
Confidence 999999999987774 4799999998 999999999999664 45444455566665 58999999999877654
No 88
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.58 E-value=4.2e-13 Score=161.24 Aligned_cols=266 Identities=14% Similarity=0.181 Sum_probs=181.9
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCC
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~ 441 (732)
.+.+-|.+......+...|... ++.......+..+.....|.++|.|+|...|.........+-....+|+.++
T Consensus 288 aDlIGFqT~~y~rhFl~~c~rl---Lg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~--- 361 (934)
T PLN03064 288 ADLVGFHTYDYARHFVSACTRI---LGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA--- 361 (934)
T ss_pred CCeEEeCCHHHHHHHHHHHHHH---hCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---
Confidence 7888888888766555555221 2221111112223334557889999999988643221111112356777776
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccc
Q 004760 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (732)
Q Consensus 442 ~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~ 521 (732)
+..+|++++|+.+.||+...++|+..+.+++|+. +|+.++
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~------------------------r~kVVL---------------- 401 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEW------------------------RDKVVL---------------- 401 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccc------------------------cCCEEE----------------
Confidence 4569999999999999999999999999998872 211111
Q ss_pred hhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhc
Q 004760 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601 (732)
Q Consensus 522 ~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~ 601 (732)
.|..+| .-+++++++.++..+ .++...+-..
T Consensus 402 ----vQIa~p--------------------------------sr~~v~eY~~l~~~V-------------~~~V~rIN~~ 432 (934)
T PLN03064 402 ----LQIAVP--------------------------------TRTDVPEYQKLTSQV-------------HEIVGRINGR 432 (934)
T ss_pred ----EEEcCC--------------------------------CCCCcHHHHHHHHHH-------------HHHHHHHhhh
Confidence 000000 003444555544333 2333333333
Q ss_pred CCCCC--cEEEcc---chhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCC----CEEEcCCCChhhhhccCceEEE
Q 004760 602 SNLSK--AMLWTP---ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV----PVLGTDAGGTKEIVEHNVTGLL 672 (732)
Q Consensus 602 l~l~~--~V~f~G---~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~Gl----PVI~td~gG~~EiVe~g~~Gll 672 (732)
++..+ -|+++. ..+++..+|+.||++|+||. .|||+++..|||||+. ++|.|..+|..+.+. ..+++
T Consensus 433 fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L~--~~All 508 (934)
T PLN03064 433 FGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSLG--AGAIL 508 (934)
T ss_pred ccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeEEeCCCchHHHhC--CceEE
Confidence 33321 234333 23789999999999999996 9999999999999944 444488888888773 35899
Q ss_pred ECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 673 HPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 673 ~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
++|.|. +++|++|..++. +++.++++.+..++.+.. +++..+++.|++-+..+.
T Consensus 509 VNP~D~--~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~-~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 509 VNPWNI--TEVAASIAQALNMPEEEREKRHRHNFMHVTT-HTAQEWAETFVSELNDTV 563 (934)
T ss_pred ECCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHH
Confidence 999998 999999999998 888999999999999875 999999999998887764
No 89
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.57 E-value=2.2e-13 Score=148.04 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=82.1
Q ss_pred CCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc-CCCChhhhhccCceEEEECCCCCc
Q 004760 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 603 ~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t-d~gG~~EiVe~g~~Gll~~~~d~~ 679 (732)
+..++|+|++.. .++..+|+.||+++.+| |.+++|||+||+|||++ +.|+.+|+++++ .+++++ .|+
T Consensus 252 ~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-------g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~-~d~- 321 (365)
T TIGR00236 252 GDSKRVHLIEPLEYLDFLNLAANSHLILTDS-------GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLVG-TDK- 321 (365)
T ss_pred CCCCCEEEECCCChHHHHHHHHhCCEEEECC-------hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEeC-CCH-
Confidence 455689999865 57889999999999877 34589999999999996 778889999876 455564 555
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+++++++..+++|++.+++|+.+.. .|.-....+++.+++.
T Consensus 322 -~~i~~ai~~ll~~~~~~~~~~~~~~-----~~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 322 -ENITKAAKRLLTDPDEYKKMSNASN-----PYGDGEASERIVEELL 362 (365)
T ss_pred -HHHHHHHHHHHhChHHHHHhhhcCC-----CCcCchHHHHHHHHHH
Confidence 8999999999999999888876552 2333444555555443
No 90
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.55 E-value=1.8e-12 Score=138.25 Aligned_cols=132 Identities=23% Similarity=0.320 Sum_probs=110.1
Q ss_pred HHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC-hhhhhcc---
Q 004760 593 EILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG-TKEIVEH--- 666 (732)
Q Consensus 593 ~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG-~~EiVe~--- 666 (732)
+.++.++++++++++|.|--.. +++-.+|..|.+.|...- .|.||+.++|+||+|+-.|+.+.|| .-+||..
T Consensus 324 k~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G 401 (465)
T KOG1387|consen 324 KSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDG 401 (465)
T ss_pred HHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCC
Confidence 3445555688999999998643 899999999999999985 9999999999999999888888765 5567753
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 667 NVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 667 g~~Gll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
..+|++++ +.++.|+++.++++ |++.|-.|+.++|+.+. +|+-....+.+...+.++++.
T Consensus 402 ~~tGFla~----t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~-RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 402 ETTGFLAP----TDEEYAEAILKIVKLNYDERNMMRRNARKSLA-RFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred ccceeecC----ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HhhHHHHHHhHhHHHHHhhcc
Confidence 36899884 22789999999988 77778999999998886 599999999999999988764
No 91
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.51 E-value=4.5e-13 Score=144.14 Aligned_cols=309 Identities=17% Similarity=0.133 Sum_probs=178.9
Q ss_pred HHHHHHHHHHC-CCEEEEEEeCCCCCChhH-----HH---hCCcEEE-EcCCC-ch--------------hhhhcCccEE
Q 004760 261 MMELATELLSC-GATVSAVVLSKRGGLMPE-----LA---RRKIKVL-EDRGE-PS--------------FKTSMKADLV 315 (732)
Q Consensus 261 ~~eLA~~L~~~-G~~V~vv~l~~~g~l~~e-----l~---~~gI~v~-~~~~~-~~--------------~~~~~k~DlV 315 (732)
+.-+.++|.+. |+++.+++... .+.+. .. ..+..+. ..... .. .....+||+|
T Consensus 15 ~~pl~~~l~~~~~~~~~~~~tg~--h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV 92 (363)
T cd03786 15 LAPLIRALKKDPGFELVLVVTGQ--HYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLV 92 (363)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCC--CCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 56778888886 89999887422 12111 11 1222221 11211 11 2225699999
Q ss_pred EeCCchhhHHHHHHHHhhcCCCccEEEEEeech----hHhHHHhhhh-hccccEEEEecHHhHHHhhhHHHhhhhhccCC
Q 004760 316 IAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----REYFDRAKLV-LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQ 390 (732)
Q Consensus 316 ia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r----~~~~~~~~~~-l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~ 390 (732)
|++..... .+...++++..+.| +++..+..+ .......... ....+.+++.++..... + ++.+..
T Consensus 93 ~~~g~~~~-~~~~~~aa~~~~iP-vv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~----l----~~~G~~ 162 (363)
T cd03786 93 LVLGDTNE-TLAAALAAFKLGIP-VAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEARRN----L----LQEGEP 162 (363)
T ss_pred EEeCCchH-HHHHHHHHHHcCCC-EEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHHHHH----H----HHcCCC
Confidence 99865433 23344555555666 443221111 1111111111 12245566666664322 2 233443
Q ss_pred CccccccCCCccceEEeecCCC-CCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCC---CCCHHHHHHHHH
Q 004760 391 PAVVPLSVNDELAFVAGFTCSL-NTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP---GKGQLLLVESAQ 466 (732)
Q Consensus 391 ~~~v~l~~n~~~~~v~vIpngv-d~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~---~KG~d~LLeA~~ 466 (732)
+ + .+.+++|++ |...+.+... .....|+.++++++.+++++.|+... .|+++.+++|++
T Consensus 163 ~-------~----kI~vign~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~ 225 (363)
T cd03786 163 P-------E----RIFVVGNTMIDALLRLLELA------KKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALA 225 (363)
T ss_pred c-------c----cEEEECchHHHHHHHHHHhh------ccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHH
Confidence 3 2 346788874 4322211110 00123567888877778888998774 799999999999
Q ss_pred HhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccC
Q 004760 467 LMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIG 546 (732)
Q Consensus 467 ~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~ 546 (732)
.+... +
T Consensus 226 ~l~~~--~------------------------------------------------------------------------ 231 (363)
T cd03786 226 ELAEE--D------------------------------------------------------------------------ 231 (363)
T ss_pred HHHhc--C------------------------------------------------------------------------
Confidence 87432 1
Q ss_pred CCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCC-CCcEEEccc--hhhHHHHHHH
Q 004760 547 NTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL-SKAMLWTPA--TTRVASLYSA 623 (732)
Q Consensus 547 ~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l-~~~V~f~G~--~~dv~~lysa 623 (732)
..+++.|.++.+..++..+. .+++ .++|.|+|. .+++..+|++
T Consensus 232 -------------~~vi~~~~~~~~~~l~~~~~---------------------~~~~~~~~v~~~~~~~~~~~~~l~~~ 277 (363)
T cd03786 232 -------------VPVVFPNHPRTRPRIREAGL---------------------EFLGHHPNVLLISPLGYLYFLLLLKN 277 (363)
T ss_pred -------------CEEEEECCCChHHHHHHHHH---------------------hhccCCCCEEEECCcCHHHHHHHHHc
Confidence 12334445444444444332 1233 468999874 4789999999
Q ss_pred cCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CChhhhhccCceEEEECCC-CCcHHHHHHHHHHHhcCHHHHHHHH
Q 004760 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPG-HPGAQVLAQNLRYLLKNPSVRERMA 701 (732)
Q Consensus 624 ADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~~EiVe~g~~Gll~~~~-d~~~e~La~aL~~LL~n~~~r~~m~ 701 (732)
||++|.+| + | ++.|||++|+|||+++. +...|.++++ +.+..+ +. ++++++|..+++++..+..|.
T Consensus 278 ad~~v~~S---g---g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g---~~~~~~~~~--~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 278 ADLVLTDS---G---G-IQEEASFLGVPVLNLRDRTERPETVESG---TNVLVGTDP--EAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred CcEEEEcC---c---c-HHhhhhhcCCCEEeeCCCCccchhhhee---eEEecCCCH--HHHHHHHHHHhcCchhhhcCC
Confidence 99999999 3 3 57999999999999975 4466666643 333333 44 899999999999988877763
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 702 MEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 702 ~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
...|.-.+.++++.+++
T Consensus 346 -------~~~~~~~~a~~~I~~~l 362 (363)
T cd03786 346 -------INPYGDGNASERIVEIL 362 (363)
T ss_pred -------CCCCCCCHHHHHHHHHh
Confidence 23455455566665554
No 92
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.51 E-value=5.5e-14 Score=130.43 Aligned_cols=83 Identities=33% Similarity=0.500 Sum_probs=61.7
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHH
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQ 685 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~ 685 (732)
++|+|+|+.+++.++|+.||+++.|+. ..+++|.+++|||++|+|||+++. +..++++....|+++ .+++ ++|++
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~-~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~~--~~l~~ 127 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSR-FNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-ANDP--EELAE 127 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BS-S-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT-H--HHHHH
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEee-CCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCCH--HHHHH
Confidence 489999999999999999999999996 377999999999999999999999 677777766677777 6666 99999
Q ss_pred HHHHHhcC
Q 004760 686 NLRYLLKN 693 (732)
Q Consensus 686 aL~~LL~n 693 (732)
+|.++++|
T Consensus 128 ~i~~l~~d 135 (135)
T PF13692_consen 128 AIERLLND 135 (135)
T ss_dssp HHHHHHH-
T ss_pred HHHHHhcC
Confidence 99999875
No 93
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.44 E-value=6.4e-11 Score=128.12 Aligned_cols=99 Identities=11% Similarity=0.044 Sum_probs=80.7
Q ss_pred CCcEEEccch--hhHHHHHHHcCEEEEccC---------CCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEE
Q 004760 605 SKAMLWTPAT--TRVASLYSAADVYVINSQ---------GLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLH 673 (732)
Q Consensus 605 ~~~V~f~G~~--~dv~~lysaADv~V~pS~---------~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~ 673 (732)
.++|.|+|+. +++..+|+. |+.+++.. .+.-.+|.++.|+||||+|||+++.+++.|+|+++.+|+++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v 284 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVENGLGFVV 284 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHhCCceEEe
Confidence 3689999976 789999988 66554431 00136899999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 004760 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVER 710 (732)
Q Consensus 674 ~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~ 710 (732)
+ +. ++++++|..+ +++.+++|++++++.++.
T Consensus 285 ~--~~--~el~~~l~~~--~~~~~~~m~~n~~~~~~~ 315 (333)
T PRK09814 285 D--SL--EELPEIIDNI--TEEEYQEMVENVKKISKL 315 (333)
T ss_pred C--CH--HHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 7 33 7899999886 457789999999987754
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.41 E-value=1.1e-10 Score=129.29 Aligned_cols=97 Identities=16% Similarity=0.038 Sum_probs=65.2
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CCh----------------hhhhc
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGT----------------KEIVE 665 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~----------------~EiVe 665 (732)
+....|.+.+ .++..+|++||++|++| |.+++|||++|+|+|...- +.+ +.++.
T Consensus 249 ~~~~~v~~~~--~~~~~~l~aADl~V~~S-------Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~ 319 (385)
T TIGR00215 249 GPDLQLHLID--GDARKAMFAADAALLAS-------GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILA 319 (385)
T ss_pred CCCCcEEEEC--chHHHHHHhCCEEeecC-------CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhc
Confidence 3344565553 36678999999999998 5677899999999988732 222 22232
Q ss_pred cCceEEEECCCCCcHHHHHHHHHHHhcCH----HHHHHHHHHHHHHH
Q 004760 666 HNVTGLLHPPGHPGAQVLAQNLRYLLKNP----SVRERMAMEGRKKV 708 (732)
Q Consensus 666 ~g~~Gll~~~~d~~~e~La~aL~~LL~n~----~~r~~m~~~~r~~v 708 (732)
+......+-.++.+++.+++.+.++++|+ +.++++.+...+..
T Consensus 320 ~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 320 NRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred CCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 22111112234556699999999999999 88888766555443
No 95
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.35 E-value=8.8e-12 Score=143.05 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=100.8
Q ss_pred CcEEEccchh--hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHH
Q 004760 606 KAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVL 683 (732)
Q Consensus 606 ~~V~f~G~~~--dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~L 683 (732)
..|.|.|+++ ++.+.|..+.++|.+|. .|+|+ +.+||++.|+|+| .-|..++|.++.||+++ +|. .+|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~li--~d~--~~l 478 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYII--DDI--SEL 478 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEEe--CCH--HHH
Confidence 6899999987 99999999999999998 99999 9999999999999 55568999999999999 565 899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 684 AQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 684 a~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
++++..+|.++..+.++...+.+.+++ ||-+++.+++.+++
T Consensus 479 ~~al~~~L~~~~~wn~~~~~sy~~~~~-yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 479 LKALDYYLDNLKNWNYSLAYSIKLIDD-YSSENIIERLNELI 519 (519)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhC
Confidence 999999999999999999999999964 99999999988753
No 96
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.34 E-value=6.4e-11 Score=137.95 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=100.5
Q ss_pred HHhcCCCCCcEEEcc-chhh-HHHHHHHcCEEEE-ccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEEC
Q 004760 598 LSQHSNLSKAMLWTP-ATTR-VASLYSAADVYVI-NSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHP 674 (732)
Q Consensus 598 l~~~l~l~~~V~f~G-~~~d-v~~lysaADv~V~-pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~ 674 (732)
+++....+++|.|+- +-.. ...++++||++++ ||++ .|++|+.-+=||..|.+.+++-.|...|.. ++.||+.+.
T Consensus 450 la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~ 527 (601)
T TIGR02094 450 FSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIG 527 (601)
T ss_pred HHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEEC
Confidence 334445667888864 4434 5578999999999 9986 999999999999999999999999888877 567999998
Q ss_pred C----------CCCcHHHHHHHHHHHh-----cC-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 675 P----------GHPGAQVLAQNLRYLL-----KN-----PSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 675 ~----------~d~~~e~La~aL~~LL-----~n-----~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
. ++.++++|.++|++.+ ++ |..+.+|.+++.......|+|++|+++|.++|+
T Consensus 528 ~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 528 DGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred CCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 4 1234489999887544 33 556888888888766557999999999999885
No 97
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.29 E-value=1.7e-11 Score=108.05 Aligned_cols=92 Identities=29% Similarity=0.437 Sum_probs=85.0
Q ss_pred EEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 626 VYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGR 705 (732)
Q Consensus 626 v~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r 705 (732)
+++.|+. .++++..++|+||||+|||+++.+++.+++.++..++.++ ++ +++.+++..+++||+.+++++++|+
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~~--~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--DP--EELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--CH--HHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3567777 7899999999999999999999999999999988999887 55 8999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 004760 706 KKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 706 ~~v~~~ys~~~~~~~~~e 723 (732)
+.++++|+|++.++++++
T Consensus 75 ~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHhCCHHHHHHHHHC
Confidence 999999999999999874
No 98
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.17 E-value=9.2e-09 Score=112.82 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=74.5
Q ss_pred EEccch-hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC-----C----hhhhhccCceEEEECCCCC
Q 004760 609 LWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-----G----TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 609 ~f~G~~-~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g-----G----~~EiVe~g~~Gll~~~~d~ 678 (732)
...++. ++++++|++||++|.- +-+.++.|++++|+|.|.-... + ..+.+.+...+..+...+.
T Consensus 237 ~~~~f~~~~m~~~~~~adlvIsr------~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~ 310 (352)
T PRK12446 237 RQFEYVHGELPDILAITDFVISR------AGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDV 310 (352)
T ss_pred EEecchhhhHHHHHHhCCEEEEC------CChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcC
Confidence 445776 6899999999999844 4788999999999999987432 2 2234444456667666666
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
+++.+++.+..+++|++.+++ ++ +.+.....++++.+++..
T Consensus 311 ~~~~l~~~l~~ll~~~~~~~~---~~-----~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 311 TVNSLIKHVEELSHNNEKYKT---AL-----KKYNGKEAIQTIIDHISE 351 (352)
T ss_pred CHHHHHHHHHHHHcCHHHHHH---HH-----HHcCCCCHHHHHHHHHHh
Confidence 679999999999998876542 11 235555666666666543
No 99
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8e-08 Score=103.37 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=102.0
Q ss_pred EEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEc-c--chhhHHHHHHHcCEEEE--ccCCCCC
Q 004760 562 VLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT-P--ATTRVASLYSAADVYVI--NSQGLGE 636 (732)
Q Consensus 562 LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~-G--~~~dv~~lysaADv~V~--pS~~~~E 636 (732)
.++-|+||..+.....|. ++++. +|.+. + ..+|++.++..||+.|+ +|.+ +-
T Consensus 296 ciITGKGPlkE~Y~~~I~---------------------~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSS-GL 352 (444)
T KOG2941|consen 296 CIITGKGPLKEKYSQEIH---------------------EKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSSS-GL 352 (444)
T ss_pred EEEcCCCchhHHHHHHHH---------------------Hhccc-ceeeeecccccccchhHhhccccceEeeecCc-cc
Confidence 566688877655444442 22553 34333 3 34899999999998765 4432 56
Q ss_pred CCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHhc
Q 004760 637 TFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK----NPSVRERMAMEGRKKVERMY 712 (732)
Q Consensus 637 gfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~----n~~~r~~m~~~~r~~v~~~y 712 (732)
..|+++++-+.||+||++-+..-+.|+|+|+.||+++. |. ++|++.+..+++ +.+...++.++.++.. .+
T Consensus 353 DLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~--Ds--~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~--e~ 426 (444)
T KOG2941|consen 353 DLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFE--DS--EELAEQLQMLFKNFPDNADELNQLKKNLREEQ--EL 426 (444)
T ss_pred CcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEec--cH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH--hh
Confidence 68999999999999999999999999999999999996 33 889999999998 8899999999998873 36
Q ss_pred CHHHHHHHHHH
Q 004760 713 LKKHMYKKLSQ 723 (732)
Q Consensus 713 s~~~~~~~~~e 723 (732)
.|+..-++...
T Consensus 427 RW~~~W~~~~~ 437 (444)
T KOG2941|consen 427 RWDESWERTAL 437 (444)
T ss_pred hHHHHHHHhhh
Confidence 77766555443
No 100
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=3.5e-08 Score=108.68 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=87.6
Q ss_pred EEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC-C-------hhhhhccCceEEEECCCCCc
Q 004760 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-G-------TKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 608 V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g-G-------~~EiVe~g~~Gll~~~~d~~ 679 (732)
+...++.+++..+|++||++|+= +-++++.|+.++|+|+|--..+ + ....+++...|.+++..+.+
T Consensus 237 ~~v~~f~~dm~~~~~~ADLvIsR------aGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt 310 (357)
T COG0707 237 VRVLPFIDDMAALLAAADLVISR------AGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELT 310 (357)
T ss_pred EEEeeHHhhHHHHHHhccEEEeC------CcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCC
Confidence 88899999999999999999943 4789999999999999987653 3 33455566688888888867
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
++.+.+.|.+++++|+..++|.+++++... ...++++.+++..+
T Consensus 311 ~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~-----p~aa~~i~~~~~~~ 354 (357)
T COG0707 311 PEKLAELILRLLSNPEKLKAMAENAKKLGK-----PDAAERIADLLLAL 354 (357)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHH
Confidence 799999999999999999999998876533 44455555555544
No 101
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.08 E-value=1.4e-08 Score=115.59 Aligned_cols=266 Identities=17% Similarity=0.225 Sum_probs=155.4
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCC
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~ 441 (732)
.+.+-|.+......+...|.... .......--.+..++....|.+.|-|+|.+.|......+........+++.++ .
T Consensus 198 aDlIgFqt~~~~~nFl~~~~r~l-g~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~ 274 (474)
T PF00982_consen 198 ADLIGFQTFEYARNFLSCCKRLL-GLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--G 274 (474)
T ss_dssp SSEEEESSHHHHHHHHHHHHHHS--EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T
T ss_pred CCEEEEecHHHHHHHHHHHHHHc-CCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--C
Confidence 78899999888777777774331 11111100012234445677899999999887543221111112356777775 3
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccc
Q 004760 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (732)
Q Consensus 442 ~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~ 521 (732)
+..+|+.+.|++..||+..=++|+..+.+++|. .+|+..+
T Consensus 275 ~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~------------------------~~~kv~l---------------- 314 (474)
T PF00982_consen 275 KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPE------------------------YRGKVVL---------------- 314 (474)
T ss_dssp -SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GG------------------------GTTTEEE----------------
T ss_pred CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcC------------------------ccCcEEE----------------
Confidence 347999999999999999999999999999997 2222222
Q ss_pred hhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhc
Q 004760 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601 (732)
Q Consensus 522 ~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~ 601 (732)
.|...|.. .+.+..++++..+ .++...+-..
T Consensus 315 ----iQi~~psr--------------------------------~~~~~y~~~~~~v-------------~~~v~~IN~~ 345 (474)
T PF00982_consen 315 ----IQIAVPSR--------------------------------EDVPEYQELRREV-------------EELVGRINGK 345 (474)
T ss_dssp ----EEE--B-S--------------------------------TTSHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred ----EEEeeccC--------------------------------ccchhHHHHHHHH-------------HHHHHHHHhh
Confidence 11111100 1112223333222 3444444444
Q ss_pred CCCCC--cEEEc-c--chhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCC----EEEcCCCChhhhhccCceEEE
Q 004760 602 SNLSK--AMLWT-P--ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----VLGTDAGGTKEIVEHNVTGLL 672 (732)
Q Consensus 602 l~l~~--~V~f~-G--~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlP----VI~td~gG~~EiVe~g~~Gll 672 (732)
++..+ -|.++ . ..+++..+|+.||+++++|. -+|+-++..|+.||..+ +|.|...|..+.+.+ ..++
T Consensus 346 ~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~ 421 (474)
T PF00982_consen 346 YGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSL--RDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALL 421 (474)
T ss_dssp H-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--S--SBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EE
T ss_pred cccCCceeEEEEecCCCHHHHHHHHHhhhhEEecch--hhccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEE
Confidence 45433 24444 3 23789999999999999996 99999999999999765 677888888887764 3488
Q ss_pred ECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 673 HPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 673 ~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
++|-|. +++|++|...|. .++.++..-+..++.+.+ ++..++++.+++-++
T Consensus 422 VNP~d~--~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~-~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 422 VNPWDI--EEVADAIHEALTMPPEERKERHARLREYVRE-HDVQWWAESFLRDLK 473 (474)
T ss_dssp E-TT-H--HHHHHHHHHHHT--HHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHH
T ss_pred ECCCCh--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh-CCHHHHHHHHHHHhh
Confidence 999988 999999999999 555666666667777764 999999999988765
No 102
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=8.5e-07 Score=98.30 Aligned_cols=349 Identities=17% Similarity=0.207 Sum_probs=211.8
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeCCCCC-ChhHHHhCCcEEEEcCCCch-----hhhhcCc
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGEPS-----FKTSMKA 312 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~--G~~V~vv~l~~~g~-l~~el~~~gI~v~~~~~~~~-----~~~~~k~ 312 (732)
.+..=++-+|..|. |-.+.+.-|.++|.+. +..+.+.+.+..|. ...++-...+.+..++.+.. |.+..+|
T Consensus 46 ~~~~p~vWiHaaSV-GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P 124 (419)
T COG1519 46 KPEGPLVWIHAASV-GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRP 124 (419)
T ss_pred CCCCCeEEEEecch-hHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCC
Confidence 33445666888877 4567788999999998 77777777555552 22333334477777777665 5558899
Q ss_pred cEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh---HhHH---HhhhhhccccEEEEecHHhHHHhhhHHHhhhhh
Q 004760 313 DLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR---EYFD---RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK 386 (732)
Q Consensus 313 DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~---~~~~---~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~ 386 (732)
|++|.--. -.|..-.......+.+.+.-----.-+ .|.. ..+..+..++.++..|+.+.+. + ..
T Consensus 125 ~l~Ii~Et--ElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~R----f----~~ 194 (419)
T COG1519 125 KLLIIMET--ELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQR----F----RS 194 (419)
T ss_pred CEEEEEec--cccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHH----H----Hh
Confidence 99977532 235554555556666644321100001 1111 1234555688888888886443 4 44
Q ss_pred ccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHH
Q 004760 387 LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQ 466 (732)
Q Consensus 387 l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~ 466 (732)
+|..+ |.+..|-. .|.+.- +... ...+.+|..++.+ +.+++..|+ ....-+.++++++
T Consensus 195 LGa~~--v~v~GNlK----------fd~~~~-~~~~-----~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~ 252 (419)
T COG1519 195 LGAKP--VVVTGNLK----------FDIEPP-PQLA-----AELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQ 252 (419)
T ss_pred cCCcc--eEEeccee----------ecCCCC-hhhH-----HHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHHH
Confidence 66654 11111111 111111 1111 1347788888865 456666666 3333456999999
Q ss_pred HhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccC
Q 004760 467 LMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIG 546 (732)
Q Consensus 467 ~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~ 546 (732)
.+.++.|+.
T Consensus 253 ~l~~~~~~~----------------------------------------------------------------------- 261 (419)
T COG1519 253 ALKKQFPNL----------------------------------------------------------------------- 261 (419)
T ss_pred HHHhhCCCc-----------------------------------------------------------------------
Confidence 999998871
Q ss_pred CCCccccCCcccceeEEeccCchh-hhhHhhhhhccCC----CCCChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHH
Q 004760 547 NTDAVSFGSGHLRRKVLSKSDGKQ-QQALKILIGSVGS----KSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLY 621 (732)
Q Consensus 547 ~~d~v~iG~~~~~~~LlivG~G~~-~~~Lk~li~~~G~----~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~ly 621 (732)
.++++=+-++ .+.+..++...|- .+.. .....+.+|.......++..+|
T Consensus 262 --------------llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~------------~~~~~~tdV~l~DtmGEL~l~y 315 (419)
T COG1519 262 --------------LLILVPRHPERFKAVENLLKRKGLSVTRRSQG------------DPPFSDTDVLLGDTMGELGLLY 315 (419)
T ss_pred --------------eEEEecCChhhHHHHHHHHHHcCCeEEeecCC------------CCCCCCCcEEEEecHhHHHHHH
Confidence 1122222221 2233333333321 0000 0001234677777779999999
Q ss_pred HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHH
Q 004760 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVR 697 (732)
Q Consensus 622 saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r 697 (732)
..||+.++.-. +.+-.|-.++|+.++|+|||.-.. ..+.+-+.+...|+.++. . +.++..+..++.|++.+
T Consensus 316 ~~adiAFVGGS-lv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~--~--~~l~~~v~~l~~~~~~r 390 (419)
T COG1519 316 GIADIAFVGGS-LVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVED--A--DLLAKAVELLLADEDKR 390 (419)
T ss_pred hhccEEEECCc-ccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECC--H--HHHHHHHHHhcCCHHHH
Confidence 99998666543 466788999999999999998533 344444555556777764 3 77999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 698 ERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 698 ~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
++|++++.+.+.++ +...+++++.+..
T Consensus 391 ~~~~~~~~~~v~~~---~gal~r~l~~l~~ 417 (419)
T COG1519 391 EAYGRAGLEFLAQN---RGALARTLEALKP 417 (419)
T ss_pred HHHHHHHHHHHHHh---hHHHHHHHHHhhh
Confidence 99999999998764 5566676666654
No 103
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.00 E-value=3.9e-08 Score=111.48 Aligned_cols=265 Identities=12% Similarity=0.093 Sum_probs=174.2
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCC
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~ 441 (732)
.+.+-|.+......+...|... ........ ..+...+....|.+.|-|+|++.|......+... ....+|+.++
T Consensus 180 aDlIGFqt~~y~rnFl~~~~~~-lg~~~~~~-~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~-~~~~lr~~~~--- 253 (474)
T PRK10117 180 YDLLGFQTENDRLAFLDCLSNL-TRVTTRSG-KSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPP-KLAQLKAELK--- 253 (474)
T ss_pred CccceeCCHHHHHHHHHHHHHH-cCCcccCC-CeEEECCeEEEEEEEECeEcHHHHHHHhhchHHH-HHHHHHHHcC---
Confidence 7778888888776666666432 11111010 0011123345678999999998875422111111 2255777775
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccc
Q 004760 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (732)
Q Consensus 442 ~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~ 521 (732)
+..+|+.+.|++..||+..=++|+..+.+++|+ ++|+..+
T Consensus 254 ~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe------------------------~~gkvvl---------------- 293 (474)
T PRK10117 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQ------------------------HHGKIRY---------------- 293 (474)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhChh------------------------hcCCEEE----------------
Confidence 466899999999999999999999999999998 2333322
Q ss_pred hhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhc
Q 004760 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601 (732)
Q Consensus 522 ~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~ 601 (732)
.|...|.. ++.+..++++..+ +++...+-..
T Consensus 294 ----vQia~psR--------------------------------~~v~~Y~~l~~~v-------------~~~vg~INg~ 324 (474)
T PRK10117 294 ----TQIAPTSR--------------------------------GDVQAYQDIRHQL-------------ETEAGRINGK 324 (474)
T ss_pred ----EEEcCCCC--------------------------------CccHHHHHHHHHH-------------HHHHHHHHhc
Confidence 01111100 1112223332222 3333344444
Q ss_pred CCCCC--cEEEcc---chhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCC-----CEEEcCCCChhhhhccCceEE
Q 004760 602 SNLSK--AMLWTP---ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-----PVLGTDAGGTKEIVEHNVTGL 671 (732)
Q Consensus 602 l~l~~--~V~f~G---~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~Gl-----PVI~td~gG~~EiVe~g~~Gl 671 (732)
++..+ -|+++. ..+++..+|+.||+.+++|. -+|+-+|..|+.||-. ++|.|...|..+.+. ..+
T Consensus 325 fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~Al 399 (474)
T PRK10117 325 YGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SAL 399 (474)
T ss_pred cCCCCceeEEEecCCCCHHHHHHHHHhccEEEeccc--ccccccccchheeeecCCCCccEEEecccchHHHhC---CCe
Confidence 44433 244433 23789999999999999996 9999999999999965 377788888887775 378
Q ss_pred EECCCCCcHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 672 LHPPGHPGAQVLAQNLRYLLKN-PSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 672 l~~~~d~~~e~La~aL~~LL~n-~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
+++|-|. +++|++|...|.- ++++++.-+..++.+. .++..++++.+++-+..+.
T Consensus 400 lVNP~d~--~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~-~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 400 IVNPYDR--DEVAAALDRALTMPLAERISRHAEMLDVIV-KNDINHWQECFISDLKQIV 455 (474)
T ss_pred EECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHhh
Confidence 9999998 9999999999984 4556555566666665 5899999999999887763
No 104
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.97 E-value=1.7e-08 Score=120.37 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=142.7
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCccccc
Q 004760 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (732)
Q Consensus 439 l~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~ 518 (732)
++.+.++|.++.|+..+|+++++++.+.++.+-..+.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~------------------------------------------- 510 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP------------------------------------------- 510 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC-------------------------------------------
Confidence 4456678999999999999999999998885421110
Q ss_pred ccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhH-hhhhhccCCCCCChhhHHHHHHH
Q 004760 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQAL-KILIGSVGSKSNKVPYVKEILEF 597 (732)
Q Consensus 519 ~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~L-k~li~~~G~~~~~~~y~k~il~~ 597 (732)
.....+++.|++...... +. +++.+.+
T Consensus 511 --------------------------------------~~pvQ~IfaGKAhP~d~~gK~-------------iIk~i~~- 538 (778)
T cd04299 511 --------------------------------------ERPVQFIFAGKAHPADEPGKE-------------LIQEIVE- 538 (778)
T ss_pred --------------------------------------CCCeEEEEEEecCccchHHHH-------------HHHHHHH-
Confidence 011467788887432222 22 2233333
Q ss_pred HHhcCCCCCcEEEcc-chhh-HHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECC
Q 004760 598 LSQHSNLSKAMLWTP-ATTR-VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPP 675 (732)
Q Consensus 598 l~~~l~l~~~V~f~G-~~~d-v~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~ 675 (732)
+++......+|.|+. +-.. ...++++||++++||+.-.|+.|+.-+=||.-|.+-+++--|-..|.. ++.||+.+..
T Consensus 539 ~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~ 617 (778)
T cd04299 539 FSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGD 617 (778)
T ss_pred HHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCC
Confidence 334446667888875 4333 557899999999999755999999999999999999999999998887 6789999977
Q ss_pred CC----------CcHHHHHHHHHH-Hh----c-----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 676 GH----------PGAQVLAQNLRY-LL----K-----NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 676 ~d----------~~~e~La~aL~~-LL----~-----n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
++ .++++|.+.|++ ++ + .|..+.+|.+++...+...|++++|+++|.+-++.
T Consensus 618 ~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~ 689 (778)
T cd04299 618 GDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYL 689 (778)
T ss_pred CccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHH
Confidence 22 344778888864 33 3 27788899999988888899999999999887653
No 105
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.88 E-value=4.1e-07 Score=110.23 Aligned_cols=268 Identities=11% Similarity=0.137 Sum_probs=175.5
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCc--cccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCC
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPA--VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGL 439 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~--~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl 439 (732)
.+.+-|........+...|... ..+.+... .+.+...+....|.+.|-|+|...|......+..+.....+++.++-
T Consensus 258 aDlIGFht~~yar~Fl~~~~r~-lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~ 336 (854)
T PLN02205 258 SDLIGFHTFDYARHFLSCCSRM-LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD 336 (854)
T ss_pred CCeEEecCHHHHHHHHHHHHHH-hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc
Confidence 7888888888777677766332 11221111 01122233455678999999998774321111001112456666652
Q ss_pred CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccc
Q 004760 440 TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELS 519 (732)
Q Consensus 440 ~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~ 519 (732)
++..+|+.+.|+...||+..=++|+..+.+++|+ ++|+..+
T Consensus 337 -~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~------------------------~~gkvvl-------------- 377 (854)
T PLN02205 337 -QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPE------------------------WQGKVVL-------------- 377 (854)
T ss_pred -CCCEEEEEccCcccccCHHHHHHHHHHHHHhCcc------------------------ccCCEEE--------------
Confidence 2467999999999999999999999999999998 3333332
Q ss_pred cchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHH
Q 004760 520 VSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLS 599 (732)
Q Consensus 520 ~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~ 599 (732)
.|..+|. -+++++.++++.-+ .++...+-
T Consensus 378 ------vQia~ps--------------------------------r~~~~~y~~~~~ev-------------~~~v~rIN 406 (854)
T PLN02205 378 ------VQIANPA--------------------------------RGKGKDVKEVQAET-------------HSTVKRIN 406 (854)
T ss_pred ------EEEecCC--------------------------------CcccHHHHHHHHHH-------------HHHHHHHH
Confidence 1111110 02233344444332 34444554
Q ss_pred hcCCCCC--cEEEcc---chhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCC-------------------CEEEc
Q 004760 600 QHSNLSK--AMLWTP---ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-------------------PVLGT 655 (732)
Q Consensus 600 ~~l~l~~--~V~f~G---~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~Gl-------------------PVI~t 655 (732)
..++..+ .|+++. ..+++..+|+.||++++++. -+|+-++..|+.||.. .+|.|
T Consensus 407 ~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLS 484 (854)
T PLN02205 407 ETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVS 484 (854)
T ss_pred hhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceEee
Confidence 5555432 355553 23789999999999999996 9999999999999854 36777
Q ss_pred CCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 656 DAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP-SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 656 d~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~-~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
...|....+. ..++++|-|. +++|++|.+.+..+ +.++..-+..++.+. .++...+++.+++-++.+
T Consensus 485 EfaGaa~~L~---~Ai~VNP~d~--~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~-~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 485 EFIGCSPSLS---GAIRVNPWNI--DAVADAMDSALEMAEPEKQLRHEKHYRYVS-THDVGYWARSFLQDLERT 552 (854)
T ss_pred eccchhHHhC---cCeEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHH
Confidence 7777766664 3688999998 99999999999854 444444445555555 589999999998877665
No 106
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.77 E-value=5.7e-08 Score=91.98 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=76.5
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEc-----CCCc--h---------hhhh
Q 004760 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED-----RGEP--S---------FKTS 309 (732)
Q Consensus 246 llI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~-----~~~~--~---------~~~~ 309 (732)
+...+....||+++++++||++|.++||+|++++....+....+ .+..... .... . +.++
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE----LVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKK 78 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST----EEEE---TT-SSTSS--HHHHHHHHHHHHHHH
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh----ccceeeeeecccccccchhHHHHHHHHHHHHH
Confidence 44455567899999999999999999999999996555544333 1111110 0000 0 2336
Q ss_pred cCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh------------HhHHH--hhhhhccccEEEEecHHhHHH
Q 004760 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------------EYFDR--AKLVLDRVKLLVFLSESQTKQ 375 (732)
Q Consensus 310 ~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~------------~~~~~--~~~~l~r~~~li~vS~~~~~~ 375 (732)
.+||+||++......+.. ++.. ..++++.+|..-. ..+.. ......+.+.++++|+...+.
T Consensus 79 ~~~DiVh~~~~~~~~~~~--~~~~---~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~ 153 (177)
T PF13439_consen 79 EKPDIVHIHGPPAFWIAL--LACR---KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDE 153 (177)
T ss_dssp HT-SEEECCTTHCCCHHH--HHHH---CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHH
T ss_pred cCCCeEEecccchhHHHH--Hhcc---CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHH
Confidence 799999888755433322 2212 4447777754320 11111 122345689999999997553
Q ss_pred hhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCC
Q 004760 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSS 418 (732)
Q Consensus 376 ~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~ 418 (732)
. .+.+..+ ..+.+||||+|++.|.
T Consensus 154 ----l----~~~~~~~-----------~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 154 ----L----IKFGIPP-----------EKIHVIYNGIDTDRFR 177 (177)
T ss_dssp ----H----HHHT--S-----------S-EEE----B-CCCH-
T ss_pred ----H----HHhCCcc-----------cCCEEEECCccHHHcC
Confidence 2 2223332 2459999999999873
No 107
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.9e-06 Score=97.92 Aligned_cols=264 Identities=16% Similarity=0.201 Sum_probs=166.5
Q ss_pred ccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCC
Q 004760 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (732)
Q Consensus 362 ~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~ 441 (732)
.+.+-|..+.....+...|....-..+... +..-+..+....|..+|-|+|++.|......+.-+..-..+++.++ .
T Consensus 204 ~dligFqt~~y~~nF~~~~~r~~~~~~~~~-~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~ 280 (486)
T COG0380 204 ADLIGFQTESYARNFLDLCSRLLGVTGDAD-IRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--R 280 (486)
T ss_pred CCeeEecCHHHHHHHHHHHHHhcccccccc-ccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--C
Confidence 788888888877666666643321000000 0000012345677889999999887532211100001145566665 3
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccc
Q 004760 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (732)
Q Consensus 442 ~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~ 521 (732)
+..+|+.+.|+..-||...=+.|+.++.+++|.. +|..++
T Consensus 281 ~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~------------------------~~kvvl---------------- 320 (486)
T COG0380 281 NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEW------------------------RGKVVL---------------- 320 (486)
T ss_pred CceEEEEehhcccccCcHHHHHHHHHHHHhChhh------------------------hCceEE----------------
Confidence 3678999999999999999999999999999972 222222
Q ss_pred hhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCc--hhhhhHhhhhhccCCCCCChhhHHHHHHHHH
Q 004760 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDG--KQQQALKILIGSVGSKSNKVPYVKEILEFLS 599 (732)
Q Consensus 522 ~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G--~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~ 599 (732)
+|...| .++ ...+.+... +++....+-
T Consensus 321 ----iQi~~p----------------------------------Sr~~v~~y~~~~~~-------------i~~~V~rIN 349 (486)
T COG0380 321 ----LQIAPP----------------------------------SREDVEEYQALRLQ-------------IEELVGRIN 349 (486)
T ss_pred ----EEecCC----------------------------------CccccHHHHHHHHH-------------HHHHHHHHH
Confidence 000111 111 101111111 122222332
Q ss_pred hcCCCCC--cEEEcc---chhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHc----CCCEEEcCCCChhhhhccCceE
Q 004760 600 QHSNLSK--AMLWTP---ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAF----GVPVLGTDAGGTKEIVEHNVTG 670 (732)
Q Consensus 600 ~~l~l~~--~V~f~G---~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~----GlPVI~td~gG~~EiVe~g~~G 670 (732)
..+|... -|+|+- ..+++..+|..||+++++|- -||+-+|..|+.|| +-|.|.|...|....+.+ .
T Consensus 350 ~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---A 424 (486)
T COG0380 350 GEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---A 424 (486)
T ss_pred hhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccc--cccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---C
Confidence 3333221 233332 23789999999999999996 99999999999998 346777777776666664 6
Q ss_pred EEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 671 LLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 671 ll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
++++|-|. +.+|++|...|. .++.+++.-+..++.+. .++.++++..+++-+..
T Consensus 425 liVNP~d~--~~va~ai~~AL~m~~eEr~~r~~~~~~~v~-~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 425 LIVNPWDT--KEVADAIKRALTMSLEERKERHEKLLKQVL-THDVARWANSFLDDLAQ 479 (486)
T ss_pred EeECCCCh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHh
Confidence 88999998 999999999998 45555555555566665 48999999999887764
No 108
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.71 E-value=1.4e-06 Score=92.78 Aligned_cols=77 Identities=23% Similarity=0.228 Sum_probs=55.4
Q ss_pred eEEEEeCCCCCCc--HHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc----------hhhhhcC
Q 004760 244 KFILIFHELSMTG--APLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------SFKTSMK 311 (732)
Q Consensus 244 kIllI~h~ls~gG--A~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~----------~~~~~~k 311 (732)
||++..+.-.--| =-.-++.||.+|.+.|++|.+++-...+.+.+.+...|.+|+..+... .+....+
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~ 80 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEK 80 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcC
Confidence 4566666554333 334488999999999999999995555556678889999998775532 1344669
Q ss_pred ccEEEeCCc
Q 004760 312 ADLVIAGSA 320 (732)
Q Consensus 312 ~DlVia~Sa 320 (732)
||+||+.+.
T Consensus 81 ~d~vV~D~y 89 (279)
T TIGR03590 81 FDILIVDHY 89 (279)
T ss_pred CCEEEEcCC
Confidence 999988763
No 109
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.70 E-value=2.3e-07 Score=104.94 Aligned_cols=91 Identities=18% Similarity=0.356 Sum_probs=79.4
Q ss_pred CCcEEEccchh-hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CChhhhhccCceEEEECCCCCcHHH
Q 004760 605 SKAMLWTPATT-RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPGAQV 682 (732)
Q Consensus 605 ~~~V~f~G~~~-dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~~EiVe~g~~Gll~~~~d~~~e~ 682 (732)
++.+.+.|+.. ++.++|..||+++..|. +|++++++.||+..|+|+++.+. -|..+++.+ |.+++.+++ ++
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~--~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~--~~ 400 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINH--GNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEV--DQ 400 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccc--cccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCH--HH
Confidence 56788888776 99999999999999998 99999999999999999999987 456677775 789999998 99
Q ss_pred HHHHHHHHhcCHHHHHHHHH
Q 004760 683 LAQNLRYLLKNPSVRERMAM 702 (732)
Q Consensus 683 La~aL~~LL~n~~~r~~m~~ 702 (732)
|+++|..++.+++..++.-.
T Consensus 401 m~~~i~~lL~d~~~~~~~~~ 420 (438)
T TIGR02919 401 LISKLKDLLNDPNQFRELLE 420 (438)
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 99999999999976655433
No 110
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.57 E-value=2.3e-05 Score=87.60 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=71.9
Q ss_pred cEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCCh---hhhhccC----ceEEEECCCCCc
Q 004760 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT---KEIVEHN----VTGLLHPPGHPG 679 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~---~EiVe~g----~~Gll~~~~d~~ 679 (732)
.+.+..+..++..+|++||++|..| |.+..|++++|+|+|.....+. ..+.+.. ..++.....+.
T Consensus 280 ~~~v~~~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~- 351 (396)
T TIGR03492 280 TLEVLLGRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNP- 351 (396)
T ss_pred ceEEEechHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCH-
Confidence 4666677789999999999999877 3566999999999999874332 2222321 13444455555
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYK 719 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~ 719 (732)
+.+++.+..+++|++.+++|.+++++...+....+++++
T Consensus 352 -~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~ 390 (396)
T TIGR03492 352 -EQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAE 390 (396)
T ss_pred -HHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 899999999999999988887555444333233333333
No 111
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.52 E-value=4.9e-05 Score=83.64 Aligned_cols=92 Identities=26% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~ 678 (732)
..+++|.+.++. +...+|..||++|. -+...++.||+++|+|+|+....+ ..+.++....|...+..+.
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I~------hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~ 357 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVVH------HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPREL 357 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheeee------cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccC
Confidence 456789999987 47789999999993 345679999999999999986654 3445555557777666655
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAM 702 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~ 702 (732)
+.+.+++++.++++++ .++++.+
T Consensus 358 ~~~~l~~al~~~l~~~-~~~~~~~ 380 (401)
T cd03784 358 TAERLAAALRRLLDPP-SRRRAAA 380 (401)
T ss_pred CHHHHHHHHHHHhCHH-HHHHHHH
Confidence 5699999999999854 4444443
No 112
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.46 E-value=3.4e-05 Score=82.14 Aligned_cols=80 Identities=25% Similarity=0.248 Sum_probs=61.7
Q ss_pred CCcEEEccch-hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhh------hhccCceEEEECCCC
Q 004760 605 SKAMLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE------IVEHNVTGLLHPPGH 677 (732)
Q Consensus 605 ~~~V~f~G~~-~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~E------iVe~g~~Gll~~~~d 677 (732)
.++|.+.++. .++.++|.+||++|... .-.++.||+++|+|+|.-...+..| .+++...|...+..+
T Consensus 231 ~~ni~~~~~~~~~~~~~m~~ad~vIs~~------G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~ 304 (318)
T PF13528_consen 231 PGNIHVRPFSTPDFAELMAAADLVISKG------GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQED 304 (318)
T ss_pred CCCEEEeecChHHHHHHHHhCCEEEECC------CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEccccc
Confidence 4689999976 89999999999999554 3446999999999999987755333 344556677776666
Q ss_pred CcHHHHHHHHHHH
Q 004760 678 PGAQVLAQNLRYL 690 (732)
Q Consensus 678 ~~~e~La~aL~~L 690 (732)
.+.+.|+++|+++
T Consensus 305 ~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 305 LTPERLAEFLERL 317 (318)
T ss_pred CCHHHHHHHHhcC
Confidence 6668888888764
No 113
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.42 E-value=0.00016 Score=80.11 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=72.5
Q ss_pred CcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHH
Q 004760 606 KAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVL 683 (732)
Q Consensus 606 ~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~L 683 (732)
++|.+++.. .++..+++.||++|..|. .| +.||.++|+|||. .+.-+|.++.+.+.+++. .|. +++
T Consensus 262 ~~v~l~~~l~~~~~l~Ll~~a~~vitdSS-----gg--i~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~vg-~~~--~~I 329 (365)
T TIGR03568 262 PNFRLFKSLGQERYLSLLKNADAVIGNSS-----SG--IIEAPSFGVPTIN--IGTRQKGRLRADSVIDVD-PDK--EEI 329 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCEEEEcCh-----hH--HHhhhhcCCCEEe--ecCCchhhhhcCeEEEeC-CCH--HHH
Confidence 579999864 799999999999997773 23 3899999999994 467888888887887773 344 889
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004760 684 AQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQV 724 (732)
Q Consensus 684 a~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev 724 (732)
.+++..++ ++..++.+. ....-|-.-+.+++++++
T Consensus 330 ~~a~~~~~-~~~~~~~~~-----~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 330 VKAIEKLL-DPAFKKSLK-----NVKNPYGDGNSSERIIEI 364 (365)
T ss_pred HHHHHHHh-ChHHHHHHh-----hCCCCCCCChHHHHHHHh
Confidence 99999854 444333331 112346666677776664
No 114
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.29 E-value=0.00019 Score=78.75 Aligned_cols=78 Identities=17% Similarity=0.088 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch------------------hhhhcCccEEEeCCch
Q 004760 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS------------------FKTSMKADLVIAGSAV 321 (732)
Q Consensus 260 ~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~------------------~~~~~k~DlVia~Sav 321 (732)
..-.++++|.+.||+|.+.+ .+.+...+-|...|+++.+.+.... +..+++||++++....
T Consensus 15 fFk~~I~eL~~~GheV~it~-R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~ 93 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITA-RDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISFGSP 93 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEE-eccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEecCcH
Confidence 35589999999999999998 4556667777889999887654333 2237899999877654
Q ss_pred hhHHHHHHHHhhcCCCccEEEE
Q 004760 322 CATWIDQYITRFPAGGSQVVWW 343 (732)
Q Consensus 322 ~~~~i~~~i~~~~~~~~~ivw~ 343 (732)
.+ ...++..|.|.+++.
T Consensus 94 ~a-----~~va~~lgiP~I~f~ 110 (335)
T PF04007_consen 94 EA-----ARVAFGLGIPSIVFN 110 (335)
T ss_pred HH-----HHHHHHhCCCeEEEe
Confidence 43 334566777755543
No 115
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.18 E-value=5.7e-06 Score=76.99 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=65.0
Q ss_pred CcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch---------------hh--hhcCccEEEe
Q 004760 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS---------------FK--TSMKADLVIA 317 (732)
Q Consensus 255 gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~---------------~~--~~~k~DlVia 317 (732)
||++..+.+||++|.++||+|++++....+. ..+....++.+...+.... +. ...+||+||+
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~ 79 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPE-DDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHA 79 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GG-G-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCc-ccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEe
Confidence 7999999999999999999999999655443 2234467888776543322 22 4679999999
Q ss_pred CCchhhHHHHHHHHhhcCCCccEEEEEeech--------hHhHHH-hhhhhccccEEEEecHHhHHH
Q 004760 318 GSAVCATWIDQYITRFPAGGSQVVWWIMENR--------REYFDR-AKLVLDRVKLLVFLSESQTKQ 375 (732)
Q Consensus 318 ~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r--------~~~~~~-~~~~l~r~~~li~vS~~~~~~ 375 (732)
++.. ......++....+.+ ++..+|... ..++.. ....+.+++.++++|+...+.
T Consensus 80 ~~~~--~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~ 143 (160)
T PF13579_consen 80 HSPT--AGLVAALARRRRGIP-LVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRY 143 (160)
T ss_dssp EHHH--HHHHHHHHHHHHT---EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHH
T ss_pred cccc--hhHHHHHHHHccCCc-EEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHH
Confidence 8732 223333333233444 566665421 111111 224455599999999997553
No 116
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.10 E-value=0.0001 Score=81.39 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=78.7
Q ss_pred CCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCCc
Q 004760 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 604 l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~~ 679 (732)
++++|.+.++... ..+|..||++|..+ ...++.||+++|+|+|+....+ ..+.+.+...|......+.+
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hg------G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHG------GMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECC------CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 4467888888754 48999999999655 2348899999999999976543 33445555577777666656
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQV 724 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev 724 (732)
.+.++++|++++.|++.++.+.+- ++.+...-..+..++.+.++
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~l-~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRKM-RAEIREAGGARRAADEIEGF 389 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHh
Confidence 689999999999999866665433 33344444555555555444
No 117
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.0018 Score=74.53 Aligned_cols=339 Identities=14% Similarity=0.116 Sum_probs=195.2
Q ss_pred hhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-CCh-hHHHhCCcEEEEcCC--Cchh---hhhc
Q 004760 238 RFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLM-PELARRKIKVLEDRG--EPSF---KTSM 310 (732)
Q Consensus 238 ~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-~l~-~el~~~gI~v~~~~~--~~~~---~~~~ 310 (732)
+-.+..||=+|+|+|.-.-....+..+-+.+.+..++|.++.+...+ ... ..+...=-+++..+. +... ...-
T Consensus 255 ~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d 334 (620)
T COG3914 255 RNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTD 334 (620)
T ss_pred ccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhc
Confidence 44556899999999999988899999999999999999999876322 222 222222223444432 1112 1244
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhh-hhhcc--ccEEEEecHHhHHHhhhHHHhhhhhc
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAK-LVLDR--VKLLVFLSESQTKQWLTWCEEEKLKL 387 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~-~~l~r--~~~li~vS~~~~~~~~~~~~~e~i~l 387 (732)
..||.+--+.+...-..+.++|.++... +-| .- |+.... ...++ .+.. ++.+..-.+ +.+.-+++
T Consensus 335 ~IdILvDl~g~T~d~r~~v~A~RpAPiq-vsw-lG-----y~aT~g~p~~DY~I~D~y-~vPp~ae~y----ysEkl~RL 402 (620)
T COG3914 335 GIDILVDLDGHTVDTRCQVFAHRPAPIQ-VSW-LG-----YPATTGSPNMDYFISDPY-TVPPTAEEY----YSEKLWRL 402 (620)
T ss_pred CCeEEEeccCceeccchhhhhcCCCceE-Eee-cc-----cccccCCCcceEEeeCce-ecCchHHHH----HHHHHHhc
Confidence 6777765544444334466777776542 444 31 111111 11111 1111 111221111 22222222
Q ss_pred c--CCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHH
Q 004760 388 R--SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESA 465 (732)
Q Consensus 388 ~--~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~ 465 (732)
. ++| ++. +..+. |... |.++||+++.+++++.++ ..|-...+++-+
T Consensus 403 p~cy~p-------~d~--~~~v~----------p~~s-----------R~~lglp~~avVf~c~~n--~~K~~pev~~~w 450 (620)
T COG3914 403 PQCYQP-------VDG--FEPVT----------PPPS-----------RAQLGLPEDAVVFCCFNN--YFKITPEVFALW 450 (620)
T ss_pred ccccCC-------CCC--cccCC----------CCcc-----------hhhcCCCCCeEEEEecCC--cccCCHHHHHHH
Confidence 2 112 111 00111 2222 788999999877666655 456666777777
Q ss_pred HHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCccccc
Q 004760 466 QLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSI 545 (732)
Q Consensus 466 ~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~ 545 (732)
..+.+.-|++
T Consensus 451 mqIL~~vP~S---------------------------------------------------------------------- 460 (620)
T COG3914 451 MQILSAVPNS---------------------------------------------------------------------- 460 (620)
T ss_pred HHHHHhCCCc----------------------------------------------------------------------
Confidence 7777777761
Q ss_pred CCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCC-CcEEEccch--hhHHHHHH
Q 004760 546 GNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS-KAMLWTPAT--TRVASLYS 622 (732)
Q Consensus 546 ~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~-~~V~f~G~~--~dv~~lys 622 (732)
.+++.+.|+ ++.++..++.+.+..|+. ++++|.+.. ++..+.|.
T Consensus 461 ---------------vl~L~~~~~------------------~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~ 507 (620)
T COG3914 461 ---------------VLLLKAGGD------------------DAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYG 507 (620)
T ss_pred ---------------EEEEecCCC------------------cHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhc
Confidence 233334431 233445555666666875 789999854 67889999
Q ss_pred HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC-----hhhhhc-cCceEEEECCCCCcHHHHHHHHHHHhcCHHH
Q 004760 623 AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG-----TKEIVE-HNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (732)
Q Consensus 623 aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG-----~~EiVe-~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~ 696 (732)
-||+++-+. .-+-..+.+||+-+|+|||+--..- ..-++. -|..-+++... ++..+.-..+-.|...
T Consensus 508 iADlvLDTy---PY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~----~dYV~~av~~g~dral 580 (620)
T COG3914 508 IADLVLDTY---PYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSR----ADYVEKAVAFGSDRAL 580 (620)
T ss_pred hhheeeecc---cCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCH----HHHHHHHHHhcccHHH
Confidence 999999776 4466789999999999999853210 111222 23333444322 4455555556567766
Q ss_pred HHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhhc
Q 004760 697 RERMAMEGRKKVER--MYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 697 r~~m~~~~r~~v~~--~ys~~~~~~~~~ev~~~~l~ 730 (732)
+++....-....+. -|+.+.++.++.++|....+
T Consensus 581 ~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~ 616 (620)
T COG3914 581 RQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWS 616 (620)
T ss_pred HHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHH
Confidence 76665544444333 68899999999999987654
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.02 E-value=0.00011 Score=83.61 Aligned_cols=119 Identities=15% Similarity=0.233 Sum_probs=76.9
Q ss_pred CCC-CcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhh-----hhc-cCceEEEE
Q 004760 603 NLS-KAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE-----IVE-HNVTGLLH 673 (732)
Q Consensus 603 ~l~-~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~E-----iVe-~g~~Gll~ 673 (732)
|++ +++.|.+.. ++....|..+|+++=+. .-+-+.+.+||+.+|+|||+-....... ++. -|-.-+++
T Consensus 338 Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA 414 (468)
T PF13844_consen 338 GVDPDRIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA 414 (468)
T ss_dssp TS-GGGEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-
T ss_pred CCChhhEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC
Confidence 664 789998854 55667789999999876 4467899999999999999875422111 121 12222333
Q ss_pred CCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHh
Q 004760 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVE--RMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 674 ~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~--~~ys~~~~~~~~~ev~~~~ 728 (732)
. +. +++.+.-.+|..|++.++++.+.-++... .-|+-..+++++.+.|+++
T Consensus 415 ~--s~--~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 415 D--SE--EEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp S--SH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred C--CH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 3 23 78888889999999999999988887764 4589999999999999875
No 119
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.80 E-value=0.0032 Score=70.89 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=82.3
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC----ChhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----GTKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g----G~~EiVe~g~~Gll~~~~d~ 678 (732)
++++++...++.. ..+++..||++|... --.++.||+.+|+|+|+-..+ ...+-+++-.+|...+....
T Consensus 281 ~~p~n~~v~~~~p-~~~~l~~ad~vI~hG------G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l 353 (406)
T COG1819 281 NVPDNVIVADYVP-QLELLPRADAVIHHG------GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEEL 353 (406)
T ss_pred cCCCceEEecCCC-HHHHhhhcCEEEecC------CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccC
Confidence 6778888888763 346999999999655 445899999999999997554 35666777788988886555
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
..+.+++++++++.|++.++...+. .+.+.+.-..+++++.+.+...
T Consensus 354 ~~~~l~~av~~vL~~~~~~~~~~~~-~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 354 TEERLRAAVNEVLADDSYRRAAERL-AEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHH-HHHhhhcccHHHHHHHHHHHHh
Confidence 5699999999999998876654333 3333333444444444444443
No 120
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.55 E-value=0.00097 Score=62.26 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=65.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch-------------hhhhc
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS-------------FKTSM 310 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~-------------~~~~~ 310 (732)
|||+|.... +..++++|++|.+.|++|.++++.... .......+++++..+.... +.++.
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~--~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~ 73 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDY--EKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKE 73 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCc--hhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccC
Confidence 678887766 457899999999999999999963332 4444578999888763322 23377
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEee
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME 346 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e 346 (732)
+||+||+|+..... +.+.++....+..++++.+|.
T Consensus 74 ~~DvIh~h~~~~~~-~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 74 KPDVIHCHTPSPYG-LFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred CCCEEEEecCChHH-HHHHHHHHHcCCCCEEEEecC
Confidence 99999999875443 334444445554557777753
No 121
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.49 E-value=0.0092 Score=65.53 Aligned_cols=128 Identities=10% Similarity=0.142 Sum_probs=84.1
Q ss_pred CCChhhHHHHHHHHHhcCCCCCcEEEc-cch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChh
Q 004760 585 SNKVPYVKEILEFLSQHSNLSKAMLWT-PAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661 (732)
Q Consensus 585 ~~~~~y~k~il~~l~~~l~l~~~V~f~-G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~ 661 (732)
.+...|++++.+...+..+- +++..+ .+. +|+.++++.||+.+++.. ..+++|+.++ .+.+|+||+.+......
T Consensus 225 ~~n~~Yi~~V~~~~~~lF~~-~~~~iL~e~mpf~eYl~lL~~cDl~if~~~-RQQgiGnI~l-Ll~~G~~v~L~~~np~~ 301 (360)
T PF07429_consen 225 ANNQAYIQQVIQAGKELFGA-ENFQILTEFMPFDEYLALLSRCDLGIFNHN-RQQGIGNICL-LLQLGKKVFLSRDNPFW 301 (360)
T ss_pred CchHHHHHHHHHHHHHhcCc-cceeEhhhhCCHHHHHHHHHhCCEEEEeec-hhhhHhHHHH-HHHcCCeEEEecCChHH
Confidence 34456777777776665443 456554 333 899999999999999887 3889997655 99999999999887766
Q ss_pred hhhccCceEEEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 662 EIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 662 EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
..+.+..--+++..++.+...++++=+++.. |++ . --|.-..+.+.+.+.+..+
T Consensus 302 ~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk~-----------~--iaFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 302 QDLKEQGIPVLFYGDELDEALVREAQRQLANVDKQ-----------Q--IAFFAPNYLQGWRQALRLA 356 (360)
T ss_pred HHHHhCCCeEEeccccCCHHHHHHHHHHHhhCccc-----------c--eeeeCCchHHHHHHHHHHH
Confidence 6665433445565555554566655555533 211 1 1255566666666666554
No 122
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.40 E-value=0.042 Score=61.49 Aligned_cols=76 Identities=26% Similarity=0.335 Sum_probs=53.2
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC-----------------hhhhhccCceEEEECC--
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG-----------------TKEIVEHNVTGLLHPP-- 675 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG-----------------~~EiVe~g~~Gll~~~-- 675 (732)
.+-.++|++||+.+..| |.+++|++.+|+|.|+.--.+ ++.++-+. -++|.
T Consensus 252 ~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~---~v~PEli 321 (373)
T PF02684_consen 252 GESYDAMAAADAALAAS-------GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGR---EVVPELI 321 (373)
T ss_pred CchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCC---Ccchhhh
Confidence 46778999999998777 789999999999998864322 22222211 01111
Q ss_pred -CCCcHHHHHHHHHHHhcCHHHHHHH
Q 004760 676 -GHPGAQVLAQNLRYLLKNPSVRERM 700 (732)
Q Consensus 676 -~d~~~e~La~aL~~LL~n~~~r~~m 700 (732)
++.+++.+++.+..++.|++.++..
T Consensus 322 Q~~~~~~~i~~~~~~ll~~~~~~~~~ 347 (373)
T PF02684_consen 322 QEDATPENIAAELLELLENPEKRKKQ 347 (373)
T ss_pred cccCCHHHHHHHHHHHhcCHHHHHHH
Confidence 3445699999999999999875443
No 123
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.022 Score=63.35 Aligned_cols=81 Identities=26% Similarity=0.272 Sum_probs=56.4
Q ss_pred hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-----------------CChhhhhccCceEEEECC---
Q 004760 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-----------------GGTKEIVEHNVTGLLHPP--- 675 (732)
Q Consensus 616 dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-----------------gG~~EiVe~g~~Gll~~~--- 675 (732)
+-.+.|.+||+.+..| |.+++|+|.+|+|.|++-- -+++.++-+. .++|.
T Consensus 257 ~~~~a~~~aD~al~aS-------GT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~---~ivPEliq 326 (381)
T COG0763 257 EKRKAFAAADAALAAS-------GTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGR---EIVPELIQ 326 (381)
T ss_pred hHHHHHHHhhHHHHhc-------cHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCC---ccchHHHh
Confidence 5668999999988776 7899999999999988632 2233333221 12221
Q ss_pred CCCcHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 676 GHPGAQVLAQNLRYLLKNPSVRERMAMEGRK 706 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~ 706 (732)
.+..++.+++++..++.|...++++.+...+
T Consensus 327 ~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~ 357 (381)
T COG0763 327 EDCTPENLARALEELLLNGDRREALKEKFRE 357 (381)
T ss_pred hhcCHHHHHHHHHHHhcChHhHHHHHHHHHH
Confidence 2334599999999999999766666555443
No 124
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.34 E-value=0.023 Score=61.75 Aligned_cols=130 Identities=9% Similarity=0.149 Sum_probs=89.1
Q ss_pred CCChhhHHHHHHHHHhcCCCCCcEEEcc-c--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CCh
Q 004760 585 SNKVPYVKEILEFLSQHSNLSKAMLWTP-A--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGT 660 (732)
Q Consensus 585 ~~~~~y~k~il~~l~~~l~l~~~V~f~G-~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~ 660 (732)
.++..|++++.+...+..+. +++..+- . .+++.++++.||+.++.-. ..+++|+.++ .+.+|+||+.+.. +-.
T Consensus 186 ~gn~~Yi~~V~~~~~~lF~~-~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~-RQQgiGnl~l-Li~~G~~v~l~r~n~fw 262 (322)
T PRK02797 186 ANNQAYIEEVRQAGLALFGA-ENFQILTEKLPFDDYLALLRQCDLGYFIFA-RQQGIGTLCL-LIQLGKPVVLSRDNPFW 262 (322)
T ss_pred CCCHHHHHHHHHHHHHhcCc-ccEEehhhhCCHHHHHHHHHhCCEEEEeec-hhhHHhHHHH-HHHCCCcEEEecCCchH
Confidence 34567888888888777654 4555554 2 3899999999999888765 3889997666 9999999999855 556
Q ss_pred hhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 661 KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 661 ~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
.++.+++.. ++++.++.+...+.+ .+++|....++.+. |+.+.+.+.+.++++.+..
T Consensus 263 qdl~e~gv~-Vlf~~d~L~~~~v~e----------~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 263 QDLTEQGLP-VLFTGDDLDEDIVRE----------AQRQLASVDKNIIA--FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred HHHHhCCCe-EEecCCcccHHHHHH----------HHHHHHhhCcceee--ecCHhHHHHHHHHHHHhhC
Confidence 666666543 445544432233322 23444444444443 9999999999999987653
No 125
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.24 E-value=0.047 Score=59.25 Aligned_cols=173 Identities=18% Similarity=0.163 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch-------------------hhhhcCccEEEeCCc
Q 004760 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS-------------------FKTSMKADLVIAGSA 320 (732)
Q Consensus 260 ~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~-------------------~~~~~k~DlVia~Sa 320 (732)
..-++..+|.+.||+|.+.+ -+.+.+.+-|+-.|+.+.+...... +...++||+.+.-.
T Consensus 15 fFk~lI~elekkG~ev~iT~-rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~~~- 92 (346)
T COG1817 15 FFKNLIWELEKKGHEVLITC-RDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIGKH- 92 (346)
T ss_pred HHHHHHHHHHhCCeEEEEEE-eecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEeecC-
Confidence 46688999999999999988 6677788888889998877665542 33388999997621
Q ss_pred hhhHHHHHHHHh--hcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccC
Q 004760 321 VCATWIDQYITR--FPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSV 398 (732)
Q Consensus 321 v~~~~i~~~i~~--~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~ 398 (732)
..++++ |..+.+.++.. ..++.....+.++...+.++.-.... .....|| |..|. .+..
T Consensus 93 ------s~~l~rvafgLg~psIi~~---D~ehA~~qnkl~~Pla~~ii~P~~~~-~~~~~~~-------G~~p~--~i~~ 153 (346)
T COG1817 93 ------SPELPRVAFGLGIPSIIFV---DNEHAEAQNKLTLPLADVIITPEAID-EEELLDF-------GADPN--KISG 153 (346)
T ss_pred ------CcchhhHHhhcCCceEEec---CChhHHHHhhcchhhhhheecccccc-hHHHHHh-------CCCcc--ceec
Confidence 122333 44455544332 22333333334444445455544332 1122233 55441 0000
Q ss_pred CCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEE-EEEE-----ecCCCCCCHHHHHHHHHHhH
Q 004760 399 NDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDML-VLSL-----SSINPGKGQLLLVESAQLMI 469 (732)
Q Consensus 399 n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~l-il~v-----Gri~~~KG~d~LLeA~~~l~ 469 (732)
...++.+ .+...|.|++ .+-+++|+.+++.. ++=. ...+..++.+.+.+++..+.
T Consensus 154 ~~giae~------~~v~~f~pd~----------evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~ 214 (346)
T COG1817 154 YNGIAEL------ANVYGFVPDP----------EVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELK 214 (346)
T ss_pred ccceeEE------eecccCCCCH----------HHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHH
Confidence 1111222 2233466664 35678999886544 3321 12335666666777777663
No 126
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.24 E-value=0.046 Score=60.19 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=60.8
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC--CChhhhhcc------CceEEEECCC
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA--GGTKEIVEH------NVTGLLHPPG 676 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~--gG~~EiVe~------g~~Gll~~~~ 676 (732)
.++|...-+..++..|+.+|+..|.-+ -=+++.|-+.+|+|.+.-.. ++-..++.. |-..++ .++
T Consensus 276 ~p~i~I~~f~~~~~~ll~gA~~vVSm~------GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL-~pe 348 (400)
T COG4671 276 RPHISIFEFRNDFESLLAGARLVVSMG------GYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVL-LPE 348 (400)
T ss_pred CCCeEEEEhhhhHHHHHHhhheeeecc------cchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceee-Ccc
Confidence 367889999999999999999999433 33689999999999887654 444333321 333444 445
Q ss_pred CCcHHHHHHHHHHHhcCH
Q 004760 677 HPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~ 694 (732)
+.+++.||++|..++.-|
T Consensus 349 ~lt~~~La~al~~~l~~P 366 (400)
T COG4671 349 NLTPQNLADALKAALARP 366 (400)
T ss_pred cCChHHHHHHHHhcccCC
Confidence 666799999999998844
No 127
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.18 E-value=0.00026 Score=69.03 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=62.9
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC--------hhhhhccCceEEEECCCC
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG--------TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG--------~~EiVe~g~~Gll~~~~d 677 (732)
.+|.+.++.+++.++|+.||++|.- +.+.++.|++++|+|.|.-...+ ....+.....|......+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs~------aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVISH------AGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEEC------S-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhHHHHHHHcCEEEeC------CCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 6899999999999999999988833 46779999999999998765544 222333333444443333
Q ss_pred CcHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNPSVRERMAMEG 704 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~~r~~m~~~~ 704 (732)
.+.+.|.++|..++.++..+..|..+.
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 223789999999999998877765543
No 128
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.17 Score=56.49 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=79.6
Q ss_pred CCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CChhhhhccCceEEEECCCCCc
Q 004760 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 603 ~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~~EiVe~g~~Gll~~~~d~~ 679 (732)
+-.++|.++.+. .+...++..|-+.+.-|- ...=||-.+|+||++-.. ..-+|-++.| +-.++.. +.
T Consensus 259 ~~~~~v~li~pl~~~~f~~L~~~a~~iltDSG-------giqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~-~~- 328 (383)
T COG0381 259 KNVERVKLIDPLGYLDFHNLMKNAFLILTDSG-------GIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGT-DE- 328 (383)
T ss_pred CCCCcEEEeCCcchHHHHHHHHhceEEEecCC-------chhhhHHhcCCcEEeeccCCCCccceecC-ceEEeCc-cH-
Confidence 444678888765 578889999977776553 356799999999999754 5667777754 3344433 33
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
+.+.+++..++++++.+++|+... .-|.--+..+++++++...
T Consensus 329 -~~i~~~~~~ll~~~~~~~~m~~~~-----npYgdg~as~rIv~~l~~~ 371 (383)
T COG0381 329 -ENILDAATELLEDEEFYERMSNAK-----NPYGDGNASERIVEILLNY 371 (383)
T ss_pred -HHHHHHHHHHhhChHHHHHHhccc-----CCCcCcchHHHHHHHHHHH
Confidence 889999999999999999886533 3566666777777776653
No 129
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.17 E-value=0.046 Score=60.37 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=68.5
Q ss_pred cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHH-HHHHcCCCEEEc-CCCChhhhhccCceEEEECCCCCcHHH
Q 004760 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTI-EAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPGAQV 682 (732)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vil-EAMA~GlPVI~t-d~gG~~EiVe~g~~Gll~~~~d~~~e~ 682 (732)
++.+.... .++..+++.|+++|..|- .+. ||.++|+|||.- +.|.-.|.+..+.+-+ ++ .+. +.
T Consensus 240 ~v~~~~~l~~~~~l~ll~~a~~vvgdSs--------GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v~-~~~--~~ 307 (346)
T PF02350_consen 240 NVRLIEPLGYEEYLSLLKNADLVVGDSS--------GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-VG-TDP--EA 307 (346)
T ss_dssp TEEEE----HHHHHHHHHHESEEEESSH--------HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-ET-SSH--HH
T ss_pred CEEEECCCCHHHHHHHHhcceEEEEcCc--------cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-eC-CCH--HH
Confidence 88888765 789999999999997772 356 999999999998 5577777777765544 65 444 89
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 683 LAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 683 La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+.+++.+++.+++.+..+.. ...-|--.+.+++++++++
T Consensus 308 I~~ai~~~l~~~~~~~~~~~-----~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 308 IIQAIEKALSDKDFYRKLKN-----RPNPYGDGNASERIVEILK 346 (346)
T ss_dssp HHHHHHHHHH-HHHHHHHHC-----S--TT-SS-HHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHhhcc-----CCCCCCCCcHHHHHHHhhC
Confidence 99999999988655555421 1234666777777777764
No 130
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.13 E-value=0.16 Score=59.86 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=55.5
Q ss_pred HHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CCh------------------hhhhccC-ceEEEEC-C
Q 004760 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGT------------------KEIVEHN-VTGLLHP-P 675 (732)
Q Consensus 617 v~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~------------------~EiVe~g-~~Gll~~-~ 675 (732)
-.+++++||+.+..| |.+++||+.+|+|.|+.-- +.+ +.++.+. .---+.. .
T Consensus 482 ~~~~m~aaD~aLaaS-------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ 554 (608)
T PRK01021 482 RYELMRECDCALAKC-------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGK 554 (608)
T ss_pred hHHHHHhcCeeeecC-------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCc
Confidence 369999999999877 7899999999999988532 222 2222211 0001111 2
Q ss_pred CCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004760 676 GHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKV 708 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v 708 (732)
+|.+++.+++.+ +++.|++.++++.+...+.-
T Consensus 555 ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 555 KDFQPEEVAAAL-DILKTSQSKEKQKDACRDLY 586 (608)
T ss_pred ccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHH
Confidence 345569999996 88899888877765554443
No 131
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.95 E-value=0.038 Score=64.18 Aligned_cols=97 Identities=18% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCCCcEEEccchhhHHHHH--HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCC
Q 004760 603 NLSKAMLWTPATTRVASLY--SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPG 676 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~ly--saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~ 676 (732)
+++++|.+.++... ..++ ..+++|| .-|...++.||+.+|+|+|+-...+ ....+++...|...+..
T Consensus 343 ~~p~Nv~i~~w~Pq-~~lL~hp~v~~fI------tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~ 415 (507)
T PHA03392 343 NLPANVLTQKWFPQ-RAVLKHKNVKAFV------TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTV 415 (507)
T ss_pred cCCCceEEecCCCH-HHHhcCCCCCEEE------ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccC
Confidence 45678888887643 4677 4588888 4445678999999999999976633 44445555678888877
Q ss_pred CCcHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRK 706 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~~~r~~m~~~~r~ 706 (732)
+.+.+.+.+++.++++||+.++...+-+..
T Consensus 416 ~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~ 445 (507)
T PHA03392 416 TVSAAQLVLAIVDVIENPKYRKNLKELRHL 445 (507)
T ss_pred CcCHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777799999999999998876665444433
No 132
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=0.56 Score=50.63 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=60.5
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEE----EcCCCChhhhhccCceEEEECCC--CC
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVL----GTDAGGTKEIVEHNVTGLLHPPG--HP 678 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI----~td~gG~~EiVe~g~~Gll~~~~--d~ 678 (732)
.+++.+.-.+++++++|..||+.+.. -|.++.||...|+|.+ +.+.-....-.+. -|+....+ ..
T Consensus 209 ~~~i~~~~~~~dma~LMke~d~aI~A-------aGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~--lg~~~~l~~~l~ 279 (318)
T COG3980 209 YPNINLYIDTNDMAELMKEADLAISA-------AGSTLYEALLLGVPSLVLPLAENQIATAKEFEA--LGIIKQLGYHLK 279 (318)
T ss_pred CCCeeeEecchhHHHHHHhcchheec-------cchHHHHHHHhcCCceEEeeeccHHHHHHHHHh--cCchhhccCCCc
Confidence 36777877889999999999998754 3568999999999933 3444433333332 22222111 11
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEG 704 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~ 704 (732)
.+.....+.++..|+..|+.+....
T Consensus 280 -~~~~~~~~~~i~~d~~~rk~l~~~~ 304 (318)
T COG3980 280 -DLAKDYEILQIQKDYARRKNLSFGS 304 (318)
T ss_pred -hHHHHHHHHHhhhCHHHhhhhhhcc
Confidence 1678888889999998887765543
No 133
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=96.32 E-value=0.26 Score=54.23 Aligned_cols=111 Identities=14% Similarity=0.289 Sum_probs=62.8
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc--CC-------CChhhhhccCceEEEE
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT--DA-------GGTKEIVEHNVTGLLH 673 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t--d~-------gG~~EiVe~g~~Gll~ 673 (732)
....+|.+.....++.+++..||++|.= ++-++.|++.+++|||-. |. |...+ .++...|.++
T Consensus 249 ~~~~~i~~~~~~~~~~~ll~~aDiLITD-------ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~ 320 (369)
T PF04464_consen 249 EDNSNIIFVSDNEDIYDLLAAADILITD-------YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIV 320 (369)
T ss_dssp T-TTTEEE-TT-S-HHHHHHT-SEEEES-------S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EE
T ss_pred ccCCcEEECCCCCCHHHHHHhcCEEEEe-------chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCcee
Confidence 3446788887777999999999999942 445899999999999964 33 22222 2223345555
Q ss_pred CCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 674 ~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
. +. ++|.++|..+++++...++-.+..++..-. |.-.+.++++.+.+.
T Consensus 321 ~--~~--~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 321 Y--NF--EELIEAIENIIENPDEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp S--SH--HHHHHHHTTHHHHHHHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred C--CH--HHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 3 23 889999999887765543333333333322 444566777766553
No 134
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.14 E-value=0.058 Score=61.62 Aligned_cols=91 Identities=25% Similarity=0.273 Sum_probs=60.0
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCCcH
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHPGA 680 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~~~ 680 (732)
++++....+..+. ++++...+-++-++ |.-+.+.||+.+|+|+|+-..-| ....+++...|...+..+.+.
T Consensus 322 ~~n~~~~~W~PQ~-~lL~hp~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 396 (500)
T PF00201_consen 322 PKNVLIVKWLPQN-DLLAHPRVKLFITH----GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTE 396 (500)
T ss_dssp HTTEEEESS--HH-HHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SH
T ss_pred cceEEEeccccch-hhhhcccceeeeec----cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcH
Confidence 3566666665443 67776665544454 46679999999999999976632 444455555788888777788
Q ss_pred HHHHHHHHHHhcCHHHHHHH
Q 004760 681 QVLAQNLRYLLKNPSVRERM 700 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m 700 (732)
+.+.++|.++++|++.++..
T Consensus 397 ~~l~~ai~~vl~~~~y~~~a 416 (500)
T PF00201_consen 397 EELRAAIREVLENPSYKENA 416 (500)
T ss_dssp HHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 99999999999998755443
No 135
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.99 E-value=0.12 Score=62.83 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=63.1
Q ss_pred CCCC--cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--CceEEEECCC
Q 004760 603 NLSK--AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHPPG 676 (732)
Q Consensus 603 ~l~~--~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~--g~~Gll~~~~ 676 (732)
.+.+ +|.|+... +-...++.+||+-...|+.-.|+.|..-+=||.-|.+.++|--|...|+.++ +.||+++...
T Consensus 617 ~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~ 696 (815)
T PRK14986 617 QIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNT 696 (815)
T ss_pred hhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCC
Confidence 4444 78888743 5567899999999998876699999999999999999999999999999986 7899999654
Q ss_pred C
Q 004760 677 H 677 (732)
Q Consensus 677 d 677 (732)
.
T Consensus 697 ~ 697 (815)
T PRK14986 697 A 697 (815)
T ss_pred H
Confidence 3
No 136
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=95.65 E-value=0.24 Score=50.38 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=76.7
Q ss_pred CeEEEEeCC---CCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch------------hh
Q 004760 243 RKFILIFHE---LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS------------FK 307 (732)
Q Consensus 243 ~kIllI~h~---ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~------------~~ 307 (732)
+||.+|-+- -..||-|..+.+|+..|.++|++|+|.|.....+. ...+-.|++++..+.... +.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~-~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~ 80 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPY-KEFEYNGVRLVYIPAPKNGSAESIIYDFLSLL 80 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCC-CCcccCCeEEEEeCCCCCCchHHHHHHHHHHH
Confidence 567777665 35799999999999999999999999996554432 344557888776654432 11
Q ss_pred h--------hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEe--ech-hH-------hHHHhh-hhhccccEEEEe
Q 004760 308 T--------SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIM--ENR-RE-------YFDRAK-LVLDRVKLLVFL 368 (732)
Q Consensus 308 ~--------~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~--e~r-~~-------~~~~~~-~~l~r~~~li~v 368 (732)
. ..+.|+|+....-..+++..++..+...+.+++-.+. |.+ .. |+..+. ......+.+|+-
T Consensus 81 ~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaD 160 (185)
T PF09314_consen 81 HALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIAD 160 (185)
T ss_pred HHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEc
Confidence 1 1356788765443234444444443332222332221 222 22 222111 112237889999
Q ss_pred cHHhHHH
Q 004760 369 SESQTKQ 375 (732)
Q Consensus 369 S~~~~~~ 375 (732)
|+...++
T Consensus 161 s~~I~~y 167 (185)
T PF09314_consen 161 SKGIQDY 167 (185)
T ss_pred CHHHHHH
Confidence 9887554
No 137
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.61 E-value=0.2 Score=60.78 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=63.2
Q ss_pred CCCC--cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--CceEEEECCC
Q 004760 603 NLSK--AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHPPG 676 (732)
Q Consensus 603 ~l~~--~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~--g~~Gll~~~~ 676 (732)
.+.+ +|.|+... +-...++.+||+-...|..-.|+.|..-+=+|.-|.+.|+|--|...|+.++ +.|++++...
T Consensus 604 ~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~ 683 (797)
T cd04300 604 DVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLT 683 (797)
T ss_pred hcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCC
Confidence 4445 68888743 5667899999999998876699999999999999999999999999999986 6899998654
Q ss_pred C
Q 004760 677 H 677 (732)
Q Consensus 677 d 677 (732)
.
T Consensus 684 ~ 684 (797)
T cd04300 684 A 684 (797)
T ss_pred H
Confidence 3
No 138
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=95.58 E-value=0.68 Score=55.70 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=54.6
Q ss_pred CCCCC--cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--CceEEEECC
Q 004760 602 SNLSK--AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHPP 675 (732)
Q Consensus 602 l~l~~--~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~--g~~Gll~~~ 675 (732)
..+.+ +|.|+... +-...++.+|||-...|+.-.|+.|..-+=||.-|.+.++|-.|...|+.+. ..+.+++-.
T Consensus 517 p~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~ 596 (713)
T PF00343_consen 517 PEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGL 596 (713)
T ss_dssp TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-
T ss_pred hhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCC
Confidence 34444 68888743 5566889999999998876699999999999999999999999999999864 357888854
No 139
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=0.036 Score=61.38 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=93.8
Q ss_pred CcEEEccch---hhHHHHHHHcCEEEEccC-CCCCC---CcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCC
Q 004760 606 KAMLWTPAT---TRVASLYSAADVYVINSQ-GLGET---FGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 606 ~~V~f~G~~---~dv~~lysaADv~V~pS~-~~~Eg---fg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~ 678 (732)
+++...|+. ..++.+++.-|+++.-++ .+.++ +.+-+.|+|+||.|.++..-.++.-++..|..-+++. |.
T Consensus 237 ~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~--d~ 314 (373)
T COG4641 237 PNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQ--DS 314 (373)
T ss_pred chhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEec--CH
Confidence 344455532 578888888888765332 22333 3789999999999999998899888888876655553 33
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
.++.+.+..++..++.++++++.|.+++...|+.++-..++++.+..
T Consensus 315 --kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~s 361 (373)
T COG4641 315 --KDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIAS 361 (373)
T ss_pred --HHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999888887765
No 140
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=95.34 E-value=0.13 Score=62.18 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=61.1
Q ss_pred cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--CceEEEECCCC
Q 004760 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~--g~~Gll~~~~d 677 (732)
+|.|+... +-...++.+||+....|..-.|+.|..-+=+|.-|.+.|+|--|...|+.++ +.||+++....
T Consensus 609 kVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~ 683 (798)
T PRK14985 609 KVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTV 683 (798)
T ss_pred eEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCH
Confidence 78888743 5667899999999998876699999999999999999999999999999885 68999996543
No 141
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=95.27 E-value=0.15 Score=61.66 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=63.1
Q ss_pred CCCC--cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--CceEEEECCC
Q 004760 603 NLSK--AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHPPG 676 (732)
Q Consensus 603 ~l~~--~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~--g~~Gll~~~~ 676 (732)
.+.+ +|.|+... +-...++.+||+-...|..-.|+.|..-+=+|.-|.+.|+|--|...|+.++ +.|++++...
T Consensus 601 ~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~ 680 (794)
T TIGR02093 601 AVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLT 680 (794)
T ss_pred hhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCC
Confidence 3444 78888743 5677899999999998876699999999999999999999999999999987 6899998654
Q ss_pred C
Q 004760 677 H 677 (732)
Q Consensus 677 d 677 (732)
.
T Consensus 681 ~ 681 (794)
T TIGR02093 681 V 681 (794)
T ss_pred H
Confidence 3
No 142
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=95.19 E-value=0.056 Score=58.43 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCCcEEEccch-hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhh------hhccCceEEEECCC
Q 004760 604 LSKAMLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE------IVEHNVTGLLHPPG 676 (732)
Q Consensus 604 l~~~V~f~G~~-~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~E------iVe~g~~Gll~~~~ 676 (732)
+.+++.+.++. +++..+|..||++|..+ -..++.||+++|+|+|.....+..| .+++...|...+..
T Consensus 227 ~~~~v~~~~~~~~~~~~~l~~ad~vI~~~------G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~ 300 (321)
T TIGR00661 227 YNENVEIRRITTDNFKELIKNAELVITHG------GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYK 300 (321)
T ss_pred cCCCEEEEECChHHHHHHHHhCCEEEECC------ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChh
Confidence 34678888877 58999999999999766 2347999999999999988765333 35555677777655
Q ss_pred CCcHHHHHHHHHHHhcCH
Q 004760 677 HPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~ 694 (732)
+. ++.+++...+.|+
T Consensus 301 ~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 301 EL---RLLEAILDIRNMK 315 (321)
T ss_pred hH---HHHHHHHhccccc
Confidence 53 4555555555443
No 143
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=95.01 E-value=0.34 Score=58.39 Aligned_cols=75 Identities=25% Similarity=0.246 Sum_probs=63.3
Q ss_pred CCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhc--cCceEEEECCCC
Q 004760 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVE--HNVTGLLHPPGH 677 (732)
Q Consensus 603 ~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe--~g~~Gll~~~~d 677 (732)
+...+|.|++.. +-...++.+|||-...|..-.|+.|..-+=||.-|.+.|+|-.|...|+.+ .+.||+++....
T Consensus 554 n~~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 554 NNKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred cccceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCch
Confidence 444578888743 456678999999998877569999999999999999999999999999997 779999997654
No 144
>PLN02670 transferase, transferring glycosyl groups
Probab=93.65 E-value=0.39 Score=55.47 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=73.7
Q ss_pred EEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhccCceEEEECCC----CCc
Q 004760 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHNVTGLLHPPG----HPG 679 (732)
Q Consensus 608 V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~g~~Gll~~~~----d~~ 679 (732)
+++.++..+. .+++...+..+-++ +--++++||+++|+|+|+... ......++....|+.+... ..+
T Consensus 341 ~vv~~W~PQ~-~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQV-KILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCHH-HHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 4444544333 47777776444443 455789999999999999754 3344455555678777532 245
Q ss_pred HHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 680 AQVLAQNLRYLLKNPS--VRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~--~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
.+++++++++++.+++ ..++-.+.-++.+.++=...++++.+++.+++.
T Consensus 416 ~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 416 SDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 6999999999998752 222223334444555566677777777776654
No 145
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=93.61 E-value=1.6 Score=52.94 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=78.4
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcC----CCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHH
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFG----VPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYL 690 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~G----lPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~L 690 (732)
.++-++|..+|+.+..+- .+|+.++.+|+.+|. .+.|.+..-|..+..+++ ..++.+-+. +.++..|...
T Consensus 364 ~~l~a~~~Vaev~~v~s~--rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~--aivvnpw~~--~~~~~~i~~a 437 (732)
T KOG1050|consen 364 LELLALYKVAEVCPVTSW--RDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDA--AIVVNPWDG--DEFAILISKA 437 (732)
T ss_pred HHHhhhHHhhhheeeccc--ccccchhhhHHHHhhcccCCceEEeeecccccccccc--CEEECCcch--HHHHHHHHHH
Confidence 689999999999999996 999999999999983 778888888888888753 456677766 8999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 691 LKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 691 L~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~e 723 (732)
++.++...+++....-......+...++..+..
T Consensus 438 l~~s~~e~~~r~~~~~~~v~~~~~~~W~~~~~~ 470 (732)
T KOG1050|consen 438 LTMSDEERELREPKHYKYVSTHDVVYWAKSFLQ 470 (732)
T ss_pred hhcCHHHHhhcchhhhhhhcchhHHHHHHHHHH
Confidence 997776666655444333334555555555555
No 146
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=93.21 E-value=1.8 Score=46.71 Aligned_cols=193 Identities=11% Similarity=0.081 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCCC---ChhHHHhCCcEEEEcCCCc-hhhhhcCccEEEeCCchhhHHHHHHH-
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEP-SFKTSMKADLVIAGSAVCATWIDQYI- 330 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g~---l~~el~~~gI~v~~~~~~~-~~~~~~k~DlVia~Sav~~~~i~~~i- 330 (732)
|+.+...++-....+.|++++++......- -.++.....|+++...... .++.-..+|+++.||.-+...-.+++
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vqE~~iN 81 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQEAIIN 81 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-HHHHH
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHHHHHHH
Confidence 778888888899999999999998544321 1122333344444333222 24556699999999866555544433
Q ss_pred --HhhcCCCccEEE---EEeechhHhHHHh---hhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCcc
Q 004760 331 --TRFPAGGSQVVW---WIMENRREYFDRA---KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDEL 402 (732)
Q Consensus 331 --~~~~~~~~~ivw---~i~e~r~~~~~~~---~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~ 402 (732)
..+..+...-+| ..|+....-.++- ...+++.+.+...+... |-.-. +..-.-|.-+++...-.
T Consensus 82 nY~kii~~Ik~~ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g---~f~kv----~m~~l~Ps~~~l~~~i~- 153 (355)
T PF11440_consen 82 NYEKIIKKIKPSIKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNG---WFSKV----LMKELLPSKVSLFDRIK- 153 (355)
T ss_dssp HHHHHHHCS-TTSEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTS---HHHHT----HHHHHS-SS--SSS----
T ss_pred HHHHHHHhccccceeEEEeeccceeeccccccHHHHHHhhcEEEeccccc---hHHHH----HHHhhccccCchhhhhh-
Confidence 344455532334 3333222222221 12344577777766554 21111 11011133333332211
Q ss_pred ceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEE---EEEecCCCCCCHHHHHHHHHHhHH
Q 004760 403 AFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLV---LSLSSINPGKGQLLLVESAQLMIE 470 (732)
Q Consensus 403 ~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~li---l~vGri~~~KG~d~LLeA~~~l~~ 470 (732)
.+..++| |+|...- ++.|..+-.+...+.. +++||..-.||+..+++......+
T Consensus 154 -~~p~v~n------fqpp~~i-------~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK 210 (355)
T PF11440_consen 154 -KFPMVFN------FQPPMDI-------NKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILK 210 (355)
T ss_dssp -----EEE----------B-H-------HHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTT
T ss_pred -hcceeee------cCCcccH-------HHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcC
Confidence 1222222 2221111 3455555544444444 799999999999999998887543
No 147
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=92.86 E-value=0.62 Score=53.49 Aligned_cols=84 Identities=14% Similarity=0.083 Sum_probs=55.3
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhccC-ceEEEECCCCCcH
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHPPGHPGA 680 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~g-~~Gll~~~~d~~~ 680 (732)
++....++..+. .+++..++..+-++ +--++++||+++|+|+|+... ......+.+. ..|+-+. ++.+.
T Consensus 324 ~~g~v~~w~PQ~-~iL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~ 397 (451)
T PLN02410 324 GRGYIVKWAPQK-EVLSHPAVGGFWSH----CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDR 397 (451)
T ss_pred CCeEEEccCCHH-HHhCCCccCeeeec----CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccH
Confidence 455555655333 47777666333332 344689999999999999654 3344444433 5777664 45566
Q ss_pred HHHHHHHHHHhcCHH
Q 004760 681 QVLAQNLRYLLKNPS 695 (732)
Q Consensus 681 e~La~aL~~LL~n~~ 695 (732)
+++++++++++.+++
T Consensus 398 ~~v~~av~~lm~~~~ 412 (451)
T PLN02410 398 GAVERAVKRLMVEEE 412 (451)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999998754
No 148
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.32 E-value=20 Score=39.30 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=37.2
Q ss_pred CcE-EEccch-hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC
Q 004760 606 KAM-LWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (732)
Q Consensus 606 ~~V-~f~G~~-~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG 659 (732)
..+ .|-+.. +-+..+|..||.++++.. .-.-+.||.+.|+||.+-...+
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~D-----SvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTED-----SVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCc-----cHHHHHHHHHcCCCEEEecCCC
Confidence 455 554433 448899999999998764 2335899999999999988866
No 149
>PLN02208 glycosyltransferase family protein
Probab=92.02 E-value=1.4 Score=50.41 Aligned_cols=115 Identities=5% Similarity=0.012 Sum_probs=69.3
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhcc-CceEEEECCCC---
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEH-NVTGLLHPPGH--- 677 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~-g~~Gll~~~~d--- 677 (732)
+++.+.++..+. ++++...+..+-++ +--++++||+++|+|+|+-.. .....++.+ -..|+.+...+
T Consensus 311 ~g~~v~~W~PQ~-~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 311 RGVVWGGWVQQP-LILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGW 385 (442)
T ss_pred CCcEeeccCCHH-HHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCc
Confidence 345555554333 47777876555454 455789999999999999755 334444333 45677775433
Q ss_pred CcHHHHHHHHHHHhcCH-HHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNP-SVRERMAMEGRK---KVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~-~~r~~m~~~~r~---~v~~~ys~~~~~~~~~ev~ 725 (732)
.+.++++++++++++++ +..+++.+++++ .+.+.-+-....+++++-+
T Consensus 386 ~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 386 FSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEEL 437 (442)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 46699999999999875 334444444433 2323334444444444444
No 150
>PLN02554 UDP-glycosyltransferase family protein
Probab=91.87 E-value=1.1 Score=51.92 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=64.5
Q ss_pred CcEEEccchhhHHHHH--HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC----Chh-hhhccCceEEEECC---
Q 004760 606 KAMLWTPATTRVASLY--SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----GTK-EIVEHNVTGLLHPP--- 675 (732)
Q Consensus 606 ~~V~f~G~~~dv~~ly--saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g----G~~-EiVe~g~~Gll~~~--- 675 (732)
+++.+.++..+ ..++ .++++|| + -+--++++||+.+|+|+|+.... ... .+++.-..|+.+..
T Consensus 342 ~~g~v~~W~PQ-~~iL~H~~v~~Fv--t----H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~ 414 (481)
T PLN02554 342 DIGKVIGWAPQ-VAVLAKPAIGGFV--T----HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWR 414 (481)
T ss_pred cCceEEeeCCH-HHHhCCcccCccc--c----cCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccc
Confidence 34444454432 2566 4444455 3 23456899999999999997553 333 34554456766531
Q ss_pred --------CCCcHHHHHHHHHHHhc-CHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 676 --------GHPGAQVLAQNLRYLLK-NPSVRER---MAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 676 --------~d~~~e~La~aL~~LL~-n~~~r~~---m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+..+.+++++++++++. +++.+++ +++.+++.+.+-=+-....+++++-+.
T Consensus 415 ~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~ 477 (481)
T PLN02554 415 GDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVT 477 (481)
T ss_pred ccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 23456999999999996 5544433 333333333333333444455554443
No 151
>PLN02173 UDP-glucosyl transferase family protein
Probab=91.65 E-value=1.2 Score=51.25 Aligned_cols=85 Identities=9% Similarity=0.145 Sum_probs=58.1
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhccC-ceEEEECCCC---
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHPPGH--- 677 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~g-~~Gll~~~~d--- 677 (732)
+++.+.++..+. .+++.+.+..+-++ +-.++++||+++|+|+|+-.. .-....+.+. ..|+-+..++
T Consensus 317 ~~~~i~~W~PQ~-~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQL-QVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCHH-HHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 567777766444 58888885555454 456799999999999999755 3345555542 4666653221
Q ss_pred -CcHHHHHHHHHHHhcCHH
Q 004760 678 -PGAQVLAQNLRYLLKNPS 695 (732)
Q Consensus 678 -~~~e~La~aL~~LL~n~~ 695 (732)
.+.+++++++++++.+++
T Consensus 392 ~~~~e~v~~av~~vm~~~~ 410 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGEK 410 (449)
T ss_pred cccHHHHHHHHHHHhcCCh
Confidence 245999999999998743
No 152
>PLN03007 UDP-glucosyltransferase family protein
Probab=91.62 E-value=1.5 Score=50.61 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=54.5
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhcc-CceEEEE------
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEH-NVTGLLH------ 673 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~-g~~Gll~------ 673 (732)
+.+++..++..+ ..++..+++-.+-++ +--++++||+++|+|+|+....+ ....+.+ ...|+-+
T Consensus 344 ~~g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 418 (482)
T PLN03007 344 GKGLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLV 418 (482)
T ss_pred cCCEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccc
Confidence 346676666544 368888887444343 34568999999999999976532 3332221 1234332
Q ss_pred --CCCCCcHHHHHHHHHHHhcCH
Q 004760 674 --PPGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 674 --~~~d~~~e~La~aL~~LL~n~ 694 (732)
+.+..+.+++++++++++.++
T Consensus 419 ~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 419 KVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred ccccCcccHHHHHHHHHHHhcCc
Confidence 223345699999999999876
No 153
>PLN03004 UDP-glycosyltransferase
Probab=91.45 E-value=0.83 Score=52.52 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=60.3
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhc-cCceEEEECCC---C
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVE-HNVTGLLHPPG---H 677 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe-~g~~Gll~~~~---d 677 (732)
.++.+.++..+. .+++.+++..+-++ +--++++||+++|+|+|+... ......+. .-..|+..+.+ .
T Consensus 334 ~g~~v~~W~PQ~-~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQV-PVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCHH-HHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 456665655333 58899998444443 455789999999999999654 44555554 33578777532 3
Q ss_pred CcHHHHHHHHHHHhcCHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNPSVRE 698 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~~r~ 698 (732)
.+.+++++++++++.+++.++
T Consensus 409 ~~~e~l~~av~~vm~~~~~r~ 429 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECPVRE 429 (451)
T ss_pred cCHHHHHHHHHHHhcCHHHHH
Confidence 456999999999998865443
No 154
>PLN02448 UDP-glycosyltransferase family protein
Probab=91.21 E-value=1.6 Score=50.16 Aligned_cols=93 Identities=15% Similarity=0.056 Sum_probs=56.9
Q ss_pred cEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC----Chhhhhcc-CceEEEECC-----C
Q 004760 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----GTKEIVEH-NVTGLLHPP-----G 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g----G~~EiVe~-g~~Gll~~~-----~ 676 (732)
++.+.++.. -..+++.+++..+-++ +--++++||+++|+|+|+-... .....+.+ -..|+-+.. +
T Consensus 324 ~~~v~~w~p-Q~~iL~h~~v~~fvtH----gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~ 398 (459)
T PLN02448 324 MGLVVPWCD-QLKVLCHSSVGGFWTH----CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEET 398 (459)
T ss_pred CEEEeccCC-HHHHhccCccceEEec----CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCC
Confidence 455555442 2356667776333333 4556899999999999997553 34444544 245665531 2
Q ss_pred CCcHHHHHHHHHHHhcCH-HHHHHHHHHH
Q 004760 677 HPGAQVLAQNLRYLLKNP-SVRERMAMEG 704 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~-~~r~~m~~~~ 704 (732)
..+.+++++++++++.++ +.-+.|.+++
T Consensus 399 ~~~~~~l~~av~~vl~~~~~~~~~~r~~a 427 (459)
T PLN02448 399 LVGREEIAELVKRFMDLESEEGKEMRRRA 427 (459)
T ss_pred cCcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 235599999999999864 3333444333
No 155
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=91.00 E-value=26 Score=37.94 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=42.1
Q ss_pred HHHhcCCCCCcEEEccch---hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCCh
Q 004760 597 FLSQHSNLSKAMLWTPAT---TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT 660 (732)
Q Consensus 597 ~l~~~l~l~~~V~f~G~~---~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~ 660 (732)
.++.+++-..-+.|-+.- .-+..++++||.++.+.. .=.-..||.+.|+||.+....+.
T Consensus 215 ~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD-----SinM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 215 ILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD-----SINMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred HHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecc-----hhhhhHHHhccCCCeEEEecCCc
Confidence 444555666667777652 457899999999998765 22346899999999988655443
No 156
>PLN02562 UDP-glycosyltransferase
Probab=90.70 E-value=1.4 Score=50.43 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=58.4
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhcc-CceEEEECCCCCcH
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEH-NVTGLLHPPGHPGA 680 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~-g~~Gll~~~~d~~~ 680 (732)
+++.+.++.. -..+++.+++..+-++ +.-++++||+++|+|+|+... ......+.+ -..|+-+. +.+.
T Consensus 328 ~~~~v~~w~P-Q~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~ 400 (448)
T PLN02562 328 KQGKVVSWAP-QLEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQ 400 (448)
T ss_pred cCEEEEecCC-HHHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCH
Confidence 4565566542 2367877776444453 345689999999999998754 334455543 24565554 3345
Q ss_pred HHHHHHHHHHhcCHHHHHHH
Q 004760 681 QVLAQNLRYLLKNPSVRERM 700 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m 700 (732)
+++++++++++.+++.+++.
T Consensus 401 ~~l~~~v~~~l~~~~~r~~a 420 (448)
T PLN02562 401 KEVEEGLRKVMEDSGMGERL 420 (448)
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 89999999999987655543
No 157
>PLN02210 UDP-glucosyl transferase
Probab=90.09 E-value=1.6 Score=50.32 Aligned_cols=109 Identities=11% Similarity=0.059 Sum_probs=65.7
Q ss_pred EccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhcc-CceEEEECC----CCCcH
Q 004760 610 WTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEH-NVTGLLHPP----GHPGA 680 (732)
Q Consensus 610 f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~-g~~Gll~~~----~d~~~ 680 (732)
+.++..+. .+++.+.+..+-++ +--++++||+++|+|+|+-.. .-....+.+ -..|+.+.. +..+.
T Consensus 328 v~~w~PQ~-~iL~h~~vg~FitH----~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~ 402 (456)
T PLN02210 328 VLEWSPQE-KILSHMAISCFVTH----CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKV 402 (456)
T ss_pred EEecCCHH-HHhcCcCcCeEEee----CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCH
Confidence 34544332 58888874433342 233589999999999999655 334445544 457776642 23456
Q ss_pred HHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 681 QVLAQNLRYLLKNPS------VRERMAMEGRKKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 681 e~La~aL~~LL~n~~------~r~~m~~~~r~~v~~~ys~~~~~~~~~e 723 (732)
+++++++++++.+++ ..++|++.+++.+.+-=|-....+.+++
T Consensus 403 ~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~ 451 (456)
T PLN02210 403 EEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFIS 451 (456)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999998754 2234455555555444444444444443
No 158
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=89.63 E-value=2 Score=49.45 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhccC-ceEEEECC---C
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHPP---G 676 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~g-~~Gll~~~---~ 676 (732)
.++..+.++..+. ++++.+.+..+-++ +-.++++||+.+|+|+|+-.. ......+.+. ..|+-... +
T Consensus 326 ~~~g~v~~W~PQ~-~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCSQI-EVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCCHH-HHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 3455555655433 57888886555454 455689999999999999754 3344444431 24444421 2
Q ss_pred CCcHHHHHHHHHHHhcCHH
Q 004760 677 HPGAQVLAQNLRYLLKNPS 695 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~~ 695 (732)
..+.+++++++++++.++.
T Consensus 401 ~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred cCcHHHHHHHHHHHHhhhH
Confidence 2355999999999997654
No 159
>PLN02555 limonoid glucosyltransferase
Probab=89.44 E-value=2.8 Score=48.60 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=56.4
Q ss_pred CcEEEccchhhHHHHH--HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhhccC-ceEEEEC----
Q 004760 606 KAMLWTPATTRVASLY--SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHP---- 674 (732)
Q Consensus 606 ~~V~f~G~~~dv~~ly--saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiVe~g-~~Gll~~---- 674 (732)
+++.+.++..+ ..++ .++.+|| + -+--++++||+++|+|+|+... ......+.+. ..|+...
T Consensus 337 ~~g~v~~W~PQ-~~iL~H~~v~~Fv--t----H~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~ 409 (480)
T PLN02555 337 DKGKIVQWCPQ-EKVLAHPSVACFV--T----HCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEA 409 (480)
T ss_pred CceEEEecCCH-HHHhCCCccCeEE--e----cCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCcc
Confidence 45555555433 2466 4455566 2 2445689999999999999755 3344444433 5776662
Q ss_pred -CCCCcHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 675 -PGHPGAQVLAQNLRYLLKNPSVRERMAMEGR 705 (732)
Q Consensus 675 -~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r 705 (732)
.+..+.+++++++++++.+++ -++|.++++
T Consensus 410 ~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~ 440 (480)
T PLN02555 410 ENKLITREEVAECLLEATVGEK-AAELKQNAL 440 (480)
T ss_pred ccCcCcHHHHHHHHHHHhcCch-HHHHHHHHH
Confidence 233455899999999997643 234444433
No 160
>PLN02764 glycosyltransferase family protein
Probab=89.29 E-value=3.3 Score=47.81 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=68.9
Q ss_pred EEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhc-cCceEEEECC---CCCc
Q 004760 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVE-HNVTGLLHPP---GHPG 679 (732)
Q Consensus 608 V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe-~g~~Gll~~~---~d~~ 679 (732)
+.+.++..+. ++++...+..+-++ +--++++||+++|+|+|+-...+ ....+. .-..|+.... ++.+
T Consensus 319 ~v~~~W~PQ~-~vL~h~~v~~FvtH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQQP-LILSHPSVGCFVSH----CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCCHH-HHhcCcccCeEEec----CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccC
Confidence 3444443222 56777555333333 45678999999999999976533 444553 3356665432 2346
Q ss_pred HHHHHHHHHHHhcCH-HHHHHHHHHH---HHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 680 AQVLAQNLRYLLKNP-SVRERMAMEG---RKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 680 ~e~La~aL~~LL~n~-~~r~~m~~~~---r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
.+++.+++++++.++ +..+++.+++ ++.+.+.=+-....+++++-+.+..
T Consensus 394 ~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 394 KESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 699999999999875 3334444433 3344444444555555555555443
No 161
>PLN00414 glycosyltransferase family protein
Probab=89.02 E-value=2.2 Score=49.08 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=59.0
Q ss_pred EEEccchhhHHHHHHHcCE--EEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhh-ccCceEEEECCC---C
Q 004760 608 MLWTPATTRVASLYSAADV--YVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPPG---H 677 (732)
Q Consensus 608 V~f~G~~~dv~~lysaADv--~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiV-e~g~~Gll~~~~---d 677 (732)
+++.++..+. .+++.+.+ || + -+--++++||+++|+|+|+-.. .-....+ +.-..|+.+..+ .
T Consensus 314 ~vv~~w~PQ~-~vL~h~~v~~fv--t----H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVEQP-LILSHPSVGCFV--N----HCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCCHH-HHhcCCccceEE--e----cCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 3444444332 57777744 65 3 2455789999999999999755 3344555 344677766432 2
Q ss_pred CcHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNP-SVRERMAMEGRK 706 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~-~~r~~m~~~~r~ 706 (732)
.+.+++++++++++.++ +..+++.+++++
T Consensus 387 ~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~ 416 (446)
T PLN00414 387 FSKESLRDTVKSVMDKDSEIGNLVKRNHKK 416 (446)
T ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 45699999999999865 344555555443
No 162
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=88.59 E-value=3.2 Score=48.21 Aligned_cols=83 Identities=8% Similarity=0.040 Sum_probs=56.4
Q ss_pred cEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhh-ccCceEEEECC--CCCc
Q 004760 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPP--GHPG 679 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiV-e~g~~Gll~~~--~d~~ 679 (732)
.+++.++..+. .+++.+.+..+-++ +--++++||+.+|+|+|+-.. ......+ +.-..|+..+. +..+
T Consensus 339 g~vv~~W~PQ~-~iL~h~~vg~FitH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAPQA-EILAHQAVGGFLTH----CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCCHH-HHhCCcccCeeEec----CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 46666655333 57788777444343 455689999999999999765 3344455 34456776654 2356
Q ss_pred HHHHHHHHHHHhcCH
Q 004760 680 AQVLAQNLRYLLKNP 694 (732)
Q Consensus 680 ~e~La~aL~~LL~n~ 694 (732)
.+++++++.+++.++
T Consensus 414 ~~~l~~av~~vm~~~ 428 (481)
T PLN02992 414 RSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHHHhcCC
Confidence 699999999999764
No 163
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=88.00 E-value=5.4 Score=46.23 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=65.6
Q ss_pred CcEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhh-ccCceEEEECCC--
Q 004760 606 KAMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPPG-- 676 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiV-e~g~~Gll~~~~-- 676 (732)
.++++.++..+ ..+++. +++|| + -+.-++++||+++|+|+|+-.. .-....+ +.-..|+....+
T Consensus 343 ~g~~v~~w~PQ-~~vL~h~~v~~fv--t----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~ 415 (477)
T PLN02863 343 RGLVIRGWAPQ-VAILSHRAVGAFL--T----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGAD 415 (477)
T ss_pred CCEEecCCCCH-HHHhcCCCcCeEE--e----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCC
Confidence 35666666543 357776 45566 3 2455689999999999999654 3344444 343677766321
Q ss_pred -CCcHHHHHHHHHHHh-cCHHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 677 -HPGAQVLAQNLRYLL-KNPSVRE---RMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 677 -d~~~e~La~aL~~LL-~n~~~r~---~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
..+.++++++++.++ ++++.++ ++++.+++.+.+.=+-....+++++.+.
T Consensus 416 ~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~ 470 (477)
T PLN02863 416 TVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVV 470 (477)
T ss_pred CCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 224489999999888 4444333 2233333333333344445555555443
No 164
>PLN02167 UDP-glycosyltransferase family protein
Probab=86.34 E-value=5.1 Score=46.29 Aligned_cols=109 Identities=17% Similarity=0.060 Sum_probs=61.8
Q ss_pred EEccchhhHHHHHHHcC--EEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhh-hhccCceEEEECC------
Q 004760 609 LWTPATTRVASLYSAAD--VYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKE-IVEHNVTGLLHPP------ 675 (732)
Q Consensus 609 ~f~G~~~dv~~lysaAD--v~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~E-iVe~g~~Gll~~~------ 675 (732)
.+.++..+ ..+++... +|| ++ +--++++||+++|+|+|+-.. .-... +++.-..|+.+..
T Consensus 343 ~v~~w~PQ-~~iL~h~~vg~fv--tH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~ 415 (475)
T PLN02167 343 LVCGWAPQ-VEILAHKAIGGFV--SH----CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAY 415 (475)
T ss_pred eeeccCCH-HHHhcCcccCeEE--ee----CCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccccc
Confidence 34454422 25676644 455 32 334589999999999999754 22332 3444456776642
Q ss_pred -CCCcHHHHHHHHHHHhcCH-H---HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004760 676 -GHPGAQVLAQNLRYLLKNP-S---VRERMAMEGRKKVERMYLKKHMYKKLSQV 724 (732)
Q Consensus 676 -~d~~~e~La~aL~~LL~n~-~---~r~~m~~~~r~~v~~~ys~~~~~~~~~ev 724 (732)
+..+.+++++++++++.++ . ..+++++.+++.+.+.=+-....+++++-
T Consensus 416 ~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~ 469 (475)
T PLN02167 416 GEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDD 469 (475)
T ss_pred CCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 1235589999999999754 2 22334444444444443444444444443
No 165
>PLN00164 glucosyltransferase; Provisional
Probab=84.65 E-value=6.9 Score=45.38 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=56.5
Q ss_pred EEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhh-ccCceEEEECCC-----C
Q 004760 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPPG-----H 677 (732)
Q Consensus 608 V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiV-e~g~~Gll~~~~-----d 677 (732)
+.+.++..+ ..+++.+++..+-++ +--++++||+++|+|+|+-.. .-....+ +.-..|+..... .
T Consensus 341 ~~v~~w~PQ-~~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~ 415 (480)
T PLN00164 341 LVWPTWAPQ-KEILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNF 415 (480)
T ss_pred eEEeecCCH-HHHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCc
Confidence 444444322 267788776444443 344589999999999999654 3344444 444577766321 1
Q ss_pred CcHHHHHHHHHHHhcCHH-HHHHHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNPS-VRERMAMEG 704 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~-~r~~m~~~~ 704 (732)
.+.+++++++++++.+++ ..+.|.+++
T Consensus 416 ~~~e~l~~av~~vm~~~~~~~~~~r~~a 443 (480)
T PLN00164 416 VEAAELERAVRSLMGGGEEEGRKAREKA 443 (480)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 345999999999997653 233444433
No 166
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=83.72 E-value=5.4 Score=42.10 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=34.0
Q ss_pred CcEEEccchhhHHHHHHHcCEEEE-ccCCCCCCCcHHHHHHHHcCCCEEEcCC
Q 004760 606 KAMLWTPATTRVASLYSAADVYVI-NSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~-pS~~~~Egfg~vilEAMA~GlPVI~td~ 657 (732)
.++.+.....++.+++..||.++. +|. +-+||+.+|+||++...
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~VvtinSt--------vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDAVVTINST--------VGLEALLHGKPVIVFGR 226 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCEEEEECCH--------HHHHHHHcCCceEEecC
Confidence 345555555689999999997654 443 89999999999999654
No 167
>PLN02534 UDP-glycosyltransferase
Probab=82.19 E-value=12 Score=43.67 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=52.7
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhh-ccCceEEEECC-----
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIV-EHNVTGLLHPP----- 675 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiV-e~g~~Gll~~~----- 675 (732)
.++++.++..+ ..++..+++..+-++ +-.++++||+++|+|+|+-...+ ....+ +.-..|+-+..
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fvtH----~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFLTH----CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEEec----CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 45666666544 458888887433343 46679999999999999976633 22222 33234443310
Q ss_pred -------C-CCcHHHHHHHHHHHhc
Q 004760 676 -------G-HPGAQVLAQNLRYLLK 692 (732)
Q Consensus 676 -------~-d~~~e~La~aL~~LL~ 692 (732)
+ ..+.+++++++++++.
T Consensus 419 ~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 419 WGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccccCccCHHHHHHHHHHHhc
Confidence 0 1345899999999996
No 168
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=81.94 E-value=11 Score=40.93 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=30.8
Q ss_pred Eccc--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC
Q 004760 610 WTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (732)
Q Consensus 610 f~G~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~ 657 (732)
+.|. ..++..+++.||++|.+.. |. +-=|.|+|+|+|+--.
T Consensus 236 l~g~~sL~el~ali~~a~l~I~~DS------Gp-~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 236 LAGETSLDEAVDLIALAKAVVTNDS------GL-MHVAAALNRPLVALYG 278 (334)
T ss_pred CCCCCCHHHHHHHHHhCCEEEeeCC------HH-HHHHHHcCCCEEEEEC
Confidence 5564 3799999999999997764 22 3337899999998533
No 169
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=81.28 E-value=26 Score=40.17 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=57.7
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC-Chhhhhcc-CceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GTKEIVEH-NVTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g-G~~EiVe~-g~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
.++..+++.||++|-.=. -.++=|+++|+|+|+-... -...++++ +...++++..+.+.+.|.+.+.++++
T Consensus 319 ~e~~~iIs~~dl~ig~Rl-------Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 319 LEMGKILGACELTVGTRL-------HSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHHHHHhhCCEEEEecc-------hHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHh
Confidence 578899999999885442 1477799999999997652 23333332 22335566666555899999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004760 693 NPSVRERMAMEGRKK 707 (732)
Q Consensus 693 n~~~r~~m~~~~r~~ 707 (732)
|.+..++.-..+.+.
T Consensus 392 ~r~~~~~~l~~~v~~ 406 (426)
T PRK10017 392 QLPALNARLAEAVSR 406 (426)
T ss_pred CHHHHHHHHHHHHHH
Confidence 877655443333333
No 170
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=80.93 E-value=51 Score=35.55 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=32.9
Q ss_pred cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC
Q 004760 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (732)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~ 657 (732)
.+.+.|.. .++..+++.||++|.+.. | .+-=|-|+|+|+|+--.
T Consensus 235 ~~~l~g~~sL~elaali~~a~l~I~nDS------G-p~HlA~A~g~p~valfG 280 (322)
T PRK10964 235 YVEVLPKLSLEQVARVLAGAKAVVSVDT------G-LSHLTAALDRPNITLYG 280 (322)
T ss_pred cceecCCCCHHHHHHHHHhCCEEEecCC------c-HHHHHHHhCCCEEEEEC
Confidence 35566643 799999999999997764 2 23448899999999543
No 171
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=80.01 E-value=2.9 Score=46.59 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=29.5
Q ss_pred hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC
Q 004760 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (732)
Q Consensus 616 dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td 656 (732)
+..++|++||+.+..| |.+++|++.+|+|.|..-
T Consensus 228 ~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 228 DTHKALLEAEFAFICS-------GTATLEAALIGTPFVLAY 261 (347)
T ss_pred cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEEEE
Confidence 5678999999998776 778899999999999864
No 172
>PLN02207 UDP-glycosyltransferase
Probab=78.99 E-value=17 Score=42.26 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=49.0
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhhhh-ccCceEEEEC------
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHP------ 674 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~EiV-e~g~~Gll~~------ 674 (732)
++....++..+. ++++...+..+-++ +--++++||+++|+|+|+-.. .....++ +.-..|+-+.
T Consensus 332 ~~g~i~~W~PQ~-~IL~H~~vg~FvTH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~ 406 (468)
T PLN02207 332 GRGMICGWSPQV-EILAHKAVGGFVSH----CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVH 406 (468)
T ss_pred CCeEEEEeCCHH-HHhcccccceeeec----CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccc
Confidence 334444443222 46666555333342 344588999999999999755 3344443 3334665331
Q ss_pred -CCCCcHHHHHHHHHHHhc
Q 004760 675 -PGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 675 -~~d~~~e~La~aL~~LL~ 692 (732)
.+..+.+++++++++++.
T Consensus 407 ~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 407 SDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cCCcccHHHHHHHHHHHHh
Confidence 112245899999999996
No 173
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=77.12 E-value=2.5 Score=44.75 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=49.2
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCC-CEEEcCC--CChhhhhccCceEEEECCCCCcHHHHHHHH
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-PVLGTDA--GGTKEIVEHNVTGLLHPPGHPGAQVLAQNL 687 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~Gl-PVI~td~--gG~~EiVe~g~~Gll~~~~d~~~e~La~aL 687 (732)
.++.+.|+.+...++|.- ...+..-++|||++|| |||.++. -...|++.=....+.++..+. ..|-+.|
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~--~~l~~iL 299 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADL--PELPEIL 299 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHH--HHHHHHH
Confidence 578899999999998772 3358899999999999 9998774 345566644456666665544 4444443
No 174
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=75.77 E-value=76 Score=34.04 Aligned_cols=76 Identities=21% Similarity=0.098 Sum_probs=44.3
Q ss_pred EEccc--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc-C-ceEEEEC--CCCCcHHH
Q 004760 609 LWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH-N-VTGLLHP--PGHPGAQV 682 (732)
Q Consensus 609 ~f~G~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~-g-~~Gll~~--~~d~~~e~ 682 (732)
.+.|. ..++..+++.||++|.+.. .+ +-=|-|+|+|+|+--.+..+..... + ...++.. ..+++++.
T Consensus 238 ~l~g~~sL~el~ali~~a~l~I~~DS-----gp--~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~ 310 (319)
T TIGR02193 238 VVLPKMSLAEVAALLAGADAVVGVDT-----GL--THLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDE 310 (319)
T ss_pred eecCCCCHHHHHHHHHcCCEEEeCCC-----hH--HHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHH
Confidence 34563 3789999999999997764 33 3337799999998543222222111 1 1122221 24455577
Q ss_pred HHHHHHHHh
Q 004760 683 LAQNLRYLL 691 (732)
Q Consensus 683 La~aL~~LL 691 (732)
..+++.+++
T Consensus 311 V~~ai~~~~ 319 (319)
T TIGR02193 311 VLAALEELL 319 (319)
T ss_pred HHHHHHhhC
Confidence 777776553
No 175
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=74.77 E-value=5.8 Score=36.88 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCC
Q 004760 253 SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE 303 (732)
Q Consensus 253 s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~ 303 (732)
+.+|=-.=++-||++|.++||+|.+.+ ...+.+..+..|+.+......
T Consensus 7 Gt~Ghv~P~lala~~L~~rGh~V~~~~---~~~~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRRGHEVRLAT---PPDFRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHTT-EEEEEE---TGGGHHHHHHTT-EEEESSSC
T ss_pred CChhHHHHHHHHHHHHhccCCeEEEee---cccceecccccCceEEEecCC
Confidence 344555558899999999999999877 455777889999999988776
No 176
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=72.72 E-value=1.8e+02 Score=33.14 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=32.5
Q ss_pred cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc
Q 004760 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (732)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t 655 (732)
.++.++++ +++..++..||+-++=- .+ +.+-|.-+|+|.|=.
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~NfVRG---ED----SfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDFNFVRG---ED----SFVRAQWAGKPFVWH 288 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCccceEec---ch----HHHHHHHhCCCceEe
Confidence 57777864 89999999999865432 23 578899999999865
No 177
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=72.44 E-value=28 Score=36.66 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=32.2
Q ss_pred EEEccc--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC
Q 004760 608 MLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG 658 (732)
Q Consensus 608 V~f~G~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g 658 (732)
+.+.|. ..++..+++.||++|.+.. |..-+ |.|+|+|+|+--.+
T Consensus 181 ~~~~~~~~l~e~~~li~~~~l~I~~Ds------g~~Hl-A~a~~~p~i~l~g~ 226 (279)
T cd03789 181 VNLAGKTSLRELAALLARADLVVTNDS------GPMHL-AAALGTPTVALFGP 226 (279)
T ss_pred ccCcCCCCHHHHHHHHHhCCEEEeeCC------HHHHH-HHHcCCCEEEEECC
Confidence 445554 3799999999999997652 43444 57999999986443
No 178
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=70.55 E-value=7.7 Score=40.75 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=31.1
Q ss_pred eEEEEeCCCC----CCcHHHHHHHHHHHHHHCCCEEEEEEeC
Q 004760 244 KFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLS 281 (732)
Q Consensus 244 kIllI~h~ls----~gGA~~~~~eLA~~L~~~G~~V~vv~l~ 281 (732)
||++|+-|.. .||-..++-.|+++|+++|++|.|+++.
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEcc
Confidence 6899998875 5899999999999999999999999954
No 179
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=69.32 E-value=27 Score=35.78 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=31.8
Q ss_pred cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC
Q 004760 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (732)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~ 657 (732)
.+.+.|.. .++..+++.||++|.+-. |. +-=|.|+|+|+|+--.
T Consensus 165 ~~~~~~~~~l~e~~ali~~a~~~I~~Dt------g~-~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 165 VINLAGKTSLRELAALISRADLVIGNDT------GP-MHLAAALGTPTVALFG 210 (247)
T ss_dssp TEEETTTS-HHHHHHHHHTSSEEEEESS------HH-HHHHHHTT--EEEEES
T ss_pred eEeecCCCCHHHHHHHHhcCCEEEecCC------hH-HHHHHHHhCCEEEEec
Confidence 56677644 789999999999997764 33 3348999999999643
No 180
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=69.24 E-value=36 Score=38.75 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=52.8
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC----CChhh-hhccCceEEEECCCCCcH
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKE-IVEHNVTGLLHPPGHPGA 680 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~----gG~~E-iVe~g~~Gll~~~~d~~~ 680 (732)
.+|.+.++..+..-+++..-+..+-++ =|++ .++||+.+|+|+|+... .-... +.+++..+++...+-.+
T Consensus 335 ~nV~~~~W~PQ~~lll~H~~v~~FvTH---gG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~- 409 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLLLDHPAVGGFVTH---GGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVS- 409 (496)
T ss_pred CceEEecCCCcHHHhcCCCcCcEEEEC---Cccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCc-
Confidence 357776665444433333323333342 2455 45999999999996543 33344 44555556555443322
Q ss_pred HHHHHHHHHHhcCHHHHHHH
Q 004760 681 QVLAQNLRYLLKNPSVRERM 700 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m 700 (732)
..+.+++..++.+++..+..
T Consensus 410 ~~~~~~~~~il~~~~y~~~~ 429 (496)
T KOG1192|consen 410 EELLEAIKEILENEEYKEAA 429 (496)
T ss_pred HHHHHHHHHHHcChHHHHHH
Confidence 34888999998887765544
No 181
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=68.81 E-value=24 Score=35.66 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=30.0
Q ss_pred HCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch----------------------------hhh-hcCccEEEeCCc
Q 004760 270 SCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS----------------------------FKT-SMKADLVIAGSA 320 (732)
Q Consensus 270 ~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~----------------------------~~~-~~k~DlVia~Sa 320 (732)
+.||+|.+++........ .||.++..+.... ++. -+.||+|++|+.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~G 75 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPG 75 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCC
Confidence 469999999943333322 5777766554222 212 578999999964
Q ss_pred h
Q 004760 321 V 321 (732)
Q Consensus 321 v 321 (732)
.
T Consensus 76 W 76 (171)
T PF12000_consen 76 W 76 (171)
T ss_pred c
Confidence 3
No 182
>PLN03015 UDP-glucosyl transferase
Probab=67.21 E-value=38 Score=39.39 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=49.2
Q ss_pred EEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhh-ccCceEEEEC----CCCC
Q 004760 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIV-EHNVTGLLHP----PGHP 678 (732)
Q Consensus 608 V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiV-e~g~~Gll~~----~~d~ 678 (732)
+++.++..+. .+++...+..+-++ +--++++||+++|+|+|+-...+ ....+ +....|+-.. .+..
T Consensus 337 l~v~~W~PQ~-~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQV-EILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHH-HHhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 3444443322 45566555333332 34468999999999999976532 33334 4445666653 1234
Q ss_pred cHHHHHHHHHHHhc
Q 004760 679 GAQVLAQNLRYLLK 692 (732)
Q Consensus 679 ~~e~La~aL~~LL~ 692 (732)
+.++++++++.++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 55899999999995
No 183
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=67.18 E-value=74 Score=34.80 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=30.9
Q ss_pred EEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc
Q 004760 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (732)
Q Consensus 608 V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t 655 (732)
+.+.|.. .++..+++.||++|.+.. |. +-=|-|+|+|+|+-
T Consensus 244 ~~l~g~~sL~el~ali~~a~l~I~nDT------Gp-~HlAaA~g~P~val 286 (348)
T PRK10916 244 RNLAGETQLEQAVILIAACKAIVTNDS------GL-MHVAAALNRPLVAL 286 (348)
T ss_pred eeccCCCCHHHHHHHHHhCCEEEecCC------hH-HHHHHHhCCCEEEE
Confidence 4455643 799999999999997663 32 33388999999984
No 184
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=66.59 E-value=68 Score=35.18 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=32.2
Q ss_pred cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC
Q 004760 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (732)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td 656 (732)
.+.+.|.. .++..+++.||++|.+.. |. +-=|-|+|+|+|+--
T Consensus 244 ~~~l~g~~sL~el~ali~~a~l~v~nDS------Gp-~HlAaA~g~P~v~lf 288 (352)
T PRK10422 244 VTALAGKTTFPELGALIDHAQLFIGVDS------AP-AHIAAAVNTPLICLF 288 (352)
T ss_pred cccccCCCCHHHHHHHHHhCCEEEecCC------HH-HHHHHHcCCCEEEEE
Confidence 34566754 799999999999997664 22 333779999999854
No 185
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=62.21 E-value=91 Score=33.93 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=31.8
Q ss_pred EEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC
Q 004760 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (732)
Q Consensus 608 V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td 656 (732)
+.+.|.. .++..+++.||++|.+.. |. +-=|.|+|+|+|+=-
T Consensus 243 ~~l~g~~sL~el~ali~~a~l~Vs~DS------Gp-~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 243 TSLAGKLTLPQLAALIDHARLFIGVDS------VP-MHMAAALGTPLVALF 286 (344)
T ss_pred cccCCCCCHHHHHHHHHhCCEEEecCC------HH-HHHHHHcCCCEEEEE
Confidence 4466743 799999999999997663 32 333889999999853
No 186
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=61.63 E-value=26 Score=36.10 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=45.0
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC-CcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~-gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
.+++|++| |+..+...-++.|.+.|++|+|++..-. +-..++... ++.++.-...... -..+|+|++.+
T Consensus 8 ~gk~vlVv-------GgG~va~rk~~~Ll~~ga~VtVvsp~~~-~~l~~l~~~~~i~~~~~~~~~~d--l~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVV-------GGGDVALRKARLLLKAGAQLRVIAEELE-SELTLLAEQGGITWLARCFDADI--LEGAFLVIAAT 77 (205)
T ss_pred CCCeEEEE-------CcCHHHHHHHHHHHHCCCEEEEEcCCCC-HHHHHHHHcCCEEEEeCCCCHHH--hCCcEEEEECC
Confidence 46788888 5555667888999999999999984322 223344443 5665554443322 23688887765
Q ss_pred ch
Q 004760 320 AV 321 (732)
Q Consensus 320 av 321 (732)
..
T Consensus 78 ~d 79 (205)
T TIGR01470 78 DD 79 (205)
T ss_pred CC
Confidence 43
No 187
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.00 E-value=36 Score=38.96 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=51.5
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC---ChhHHHhCCcEEEEcCCCchhhhhc
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEPSFKTSM 310 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~---l~~el~~~gI~v~~~~~~~~~~~~~ 310 (732)
++|..+..++||+++ ++|+.. +.+|+.|.+.|++|.+.-...... ...+++..|+.+.......... .
T Consensus 6 ~~~~~~~~~~~i~v~----G~G~sG---~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~--~ 76 (458)
T PRK01710 6 NEFKKFIKNKKVAVV----GIGVSN---IPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKL--D 76 (458)
T ss_pred HHHhhhhcCCeEEEE----cccHHH---HHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHh--c
Confidence 456777778888765 444433 477888999999988764222112 1245778899887654332211 4
Q ss_pred CccEEEeCCchh
Q 004760 311 KADLVIAGSAVC 322 (732)
Q Consensus 311 k~DlVia~Sav~ 322 (732)
++|+|+...++.
T Consensus 77 ~~dlVV~Spgi~ 88 (458)
T PRK01710 77 GFDVIFKTPSMR 88 (458)
T ss_pred cCCEEEECCCCC
Confidence 689998887654
No 188
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=57.26 E-value=70 Score=31.11 Aligned_cols=82 Identities=23% Similarity=0.212 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCCCChhH----HHhCCc-EEEEcCCCch--------------hhhhcCc
Q 004760 253 SMTGAPLSMMELATELLS-CGATVSAVVLSKRGGLMPE----LARRKI-KVLEDRGEPS--------------FKTSMKA 312 (732)
Q Consensus 253 s~gGA~~~~~eLA~~L~~-~G~~V~vv~l~~~g~l~~e----l~~~gI-~v~~~~~~~~--------------~~~~~k~ 312 (732)
.+.-....+++.|++|.+ .|.+|.++++.......+. +...|+ +++....... +.+..+|
T Consensus 12 ~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 91 (164)
T PF01012_consen 12 RLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGP 91 (164)
T ss_dssp EE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-
T ss_pred ccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCC
Confidence 345567789999999987 5889999998743444444 555787 4554433221 3346799
Q ss_pred cEEEeCCchhhHHHHHHHHhhc
Q 004760 313 DLVIAGSAVCATWIDQYITRFP 334 (732)
Q Consensus 313 DlVia~Sav~~~~i~~~i~~~~ 334 (732)
|+|++++.....-+...++..+
T Consensus 92 ~lVl~~~t~~g~~la~~lA~~L 113 (164)
T PF01012_consen 92 DLVLFGSTSFGRDLAPRLAARL 113 (164)
T ss_dssp SEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEcCcCCCCcHHHHHHHHh
Confidence 9999987666555555555444
No 189
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=57.23 E-value=92 Score=35.48 Aligned_cols=90 Identities=21% Similarity=0.274 Sum_probs=59.1
Q ss_pred CCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCCh-hhhhcc-CceEEEECCCCC
Q 004760 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT-KEIVEH-NVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~-~EiVe~-g~~Gll~~~~d~ 678 (732)
.-+.++++.... +++...+.+||++|-.-. ..++=||++|+|+|+=+...= ..+.++ +..++..+..+.
T Consensus 263 ~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-------HsaI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~ 335 (385)
T COG2327 263 LDSAEILVSSDEYAEELGGILAACDLIVGMRL-------HSAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPL 335 (385)
T ss_pred CCccceEeecchHHHHHHHHhccCceEEeehh-------HHHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCC
Confidence 434677777533 567789999999885432 146779999999999766332 223332 345666777666
Q ss_pred cHHHHHHHHHHHhc-CHHHHHH
Q 004760 679 GAQVLAQNLRYLLK-NPSVRER 699 (732)
Q Consensus 679 ~~e~La~aL~~LL~-n~~~r~~ 699 (732)
+.+.+.....+.+. .++.+++
T Consensus 336 ~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 336 DAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred chHHHHHHHHHHHhccHHHHhh
Confidence 66888887776555 5554444
No 190
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=56.20 E-value=31 Score=35.42 Aligned_cols=69 Identities=26% Similarity=0.312 Sum_probs=40.7
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC-CcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~-gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
.+++|++| |+.......|+.|.+.|++|+|+.......+ .++... .+.+........ .-..+|+||+-+
T Consensus 9 ~~k~vLVI-------GgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l-~~l~~~~~i~~~~~~~~~~--~l~~adlViaaT 78 (202)
T PRK06718 9 SNKRVVIV-------GGGKVAGRRAITLLKYGAHIVVISPELTENL-VKLVEEGKIRWKQKEFEPS--DIVDAFLVIAAT 78 (202)
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHHCCCeEEEEcCCCCHHH-HHHHhCCCEEEEecCCChh--hcCCceEEEEcC
Confidence 46788887 4445567888999999999999973221222 233333 344433222211 123688987765
No 191
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=55.04 E-value=70 Score=35.09 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=31.7
Q ss_pred Eccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC
Q 004760 610 WTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (732)
Q Consensus 610 f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~ 657 (732)
+.|.+ .++..++..||++|.+.. |..-+ |.|.|+|+|+--.
T Consensus 236 l~~k~sL~e~~~li~~a~l~I~~DS------g~~Hl-AaA~~~P~I~iyg 278 (334)
T COG0859 236 LAGKTSLEELAALIAGADLVIGNDS------GPMHL-AAALGTPTIALYG 278 (334)
T ss_pred cCCCCCHHHHHHHHhcCCEEEccCC------hHHHH-HHHcCCCEEEEEC
Confidence 56644 799999999999997764 33334 8899999999643
No 192
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=54.79 E-value=32 Score=35.32 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=51.7
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-CChhHHH---------------hCCcEEEEcCCCch----
Q 004760 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPELA---------------RRKIKVLEDRGEPS---- 305 (732)
Q Consensus 246 llI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-~l~~el~---------------~~gI~v~~~~~~~~---- 305 (732)
+||+.+-++... -+..|+++|.+.||+|.||.+.... +....+. ..+...+...+.+.
T Consensus 3 ILlTNDDGi~a~--Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv~ 80 (196)
T PF01975_consen 3 ILLTNDDGIDAP--GIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCVK 80 (196)
T ss_dssp EEEE-SS-TTSH--HHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHHH
T ss_pred EEEEcCCCCCCH--HHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHHH
Confidence 355555566433 3566788887778999999986532 2211111 12233333333333
Q ss_pred -----hhhhcCccEEEeCC---------chhhHHHHHHHHhhcCCCccEEEEEee
Q 004760 306 -----FKTSMKADLVIAGS---------AVCATWIDQYITRFPAGGSQVVWWIME 346 (732)
Q Consensus 306 -----~~~~~k~DlVia~S---------av~~~~i~~~i~~~~~~~~~ivw~i~e 346 (732)
+....+||+||.+- ......+...+.....+.+-+......
T Consensus 81 ~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 81 LALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp HHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred HHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 22234699999862 111222335556667788777665543
No 193
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=54.15 E-value=33 Score=39.73 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=61.3
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCC-CEEEcCC--CChhhhhccCceEEEECCCCCcHHHHHHHHHHHh
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-PVLGTDA--GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~Gl-PVI~td~--gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL 691 (732)
..+.+.++.+-..+.|.= .+...-.+.||+..|| |||.+|. ....+.++-...++.++..+. ..+ |.+.|
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v--~~~---~~~iL 407 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDV--PEL---IKNIL 407 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHh--hhH---HHHHH
Confidence 578899999999999985 7778889999999999 9999987 445555555566777763333 334 33333
Q ss_pred c--CHHHHHHHHHHHHHHHHHhcCH
Q 004760 692 K--NPSVRERMAMEGRKKVERMYLK 714 (732)
Q Consensus 692 ~--n~~~r~~m~~~~r~~v~~~ys~ 714 (732)
. -.+....|.++-...+...|.+
T Consensus 408 ~~i~~~~~~~m~~~v~~~v~r~~~~ 432 (464)
T KOG1021|consen 408 LSIPEEEVLRMRENVIRLVPRHFLK 432 (464)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhEEe
Confidence 3 2233355555554444444433
No 194
>PRK06988 putative formyltransferase; Provisional
Probab=54.14 E-value=34 Score=37.55 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=45.3
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--------CChhHHHhCCcEEEEcCCCc--h---hhhh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGEP--S---FKTS 309 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--------~l~~el~~~gI~v~~~~~~~--~---~~~~ 309 (732)
.||+++ |.+.......++|.+.|++|.+|+...+. ++.....+.||+++...... . ..+.
T Consensus 3 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~ 75 (312)
T PRK06988 3 PRAVVF-------AYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAA 75 (312)
T ss_pred cEEEEE-------eCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHh
Confidence 578777 55567777778888899999887754322 22344567899998633221 1 3457
Q ss_pred cCccEEEe
Q 004760 310 MKADLVIA 317 (732)
Q Consensus 310 ~k~DlVia 317 (732)
.+||++++
T Consensus 76 ~~~Dliv~ 83 (312)
T PRK06988 76 AAPDFIFS 83 (312)
T ss_pred cCCCEEEE
Confidence 89999954
No 195
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.83 E-value=32 Score=30.85 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=35.8
Q ss_pred hHHHHHHHcCEEEEccCCC-CCCCcHHHHHHHHcCCCEEEcCCCChhhhhc
Q 004760 616 RVASLYSAADVYVINSQGL-GETFGRVTIEAMAFGVPVLGTDAGGTKEIVE 665 (732)
Q Consensus 616 dv~~lysaADv~V~pS~~~-~Egfg~vilEAMA~GlPVI~td~gG~~EiVe 665 (732)
.++..+..||++|++.... ...+-.+--+|-..|+|++-++..|...+..
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~ 91 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLER 91 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHH
Confidence 4899999999988765411 2234455566778899999999877766543
No 196
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=52.16 E-value=1.7e+02 Score=30.51 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh--CCcEEEEcCC-Cch-hhh--hcCccEEEeCCch-hhHHHHH
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRG-EPS-FKT--SMKADLVIAGSAV-CATWIDQ 328 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~--~gI~v~~~~~-~~~-~~~--~~k~DlVia~Sav-~~~~i~~ 328 (732)
|+...=..+|+.|.+.||+|.++- .+.....+... ....++...+ ... +.. -.++|.+++-+.. -...+..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id--~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~ 84 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLID--RDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNSVLA 84 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEE--cCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHH
Confidence 888889999999999999999996 33333444222 5666665444 333 333 4589999887644 2233334
Q ss_pred HHHhhcCCCccEEEEE
Q 004760 329 YITRFPAGGSQVVWWI 344 (732)
Q Consensus 329 ~i~~~~~~~~~ivw~i 344 (732)
.++....+.+.++-.+
T Consensus 85 ~la~~~~gv~~viar~ 100 (225)
T COG0569 85 LLALKEFGVPRVIARA 100 (225)
T ss_pred HHHHHhcCCCcEEEEe
Confidence 4554445777676666
No 197
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.03 E-value=49 Score=37.46 Aligned_cols=72 Identities=24% Similarity=0.247 Sum_probs=45.7
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC---hhHHHhCCcEEEEcCCCchhhhhcCccEEEe
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRKIKVLEDRGEPSFKTSMKADLVIA 317 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l---~~el~~~gI~v~~~~~~~~~~~~~k~DlVia 317 (732)
..++++++ |++. .-+.+|..|++.|++|+++.......+ ..++...|++++........ ...+|+|+.
T Consensus 4 ~~k~v~ii------G~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~d~vv~ 74 (450)
T PRK14106 4 KGKKVLVV------GAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEF--LEGVDLVVV 74 (450)
T ss_pred CCCEEEEE------CCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhH--hhcCCEEEE
Confidence 45666554 2223 445899999999999998864322222 24455668887665544322 246899988
Q ss_pred CCch
Q 004760 318 GSAV 321 (732)
Q Consensus 318 ~Sav 321 (732)
++.+
T Consensus 75 ~~g~ 78 (450)
T PRK14106 75 SPGV 78 (450)
T ss_pred CCCC
Confidence 7654
No 198
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=51.53 E-value=39 Score=31.97 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=34.8
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChh
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP 288 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~ 288 (732)
|++-|+...+..|.....++||..|+++|+.|.+|-+....+...
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~ 45 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLS 45 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcc
Confidence 677788888889999999999999999999988888766555433
No 199
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=51.24 E-value=54 Score=32.32 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=39.8
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC-CcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~-gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
.+++|++| |+.......|+.|.+.|++|+||.. ...+++... .+.+........ .-..+|+|++-+
T Consensus 12 ~~~~vlVv-------GGG~va~rka~~Ll~~ga~V~VIsp----~~~~~l~~l~~i~~~~~~~~~~--dl~~a~lViaaT 78 (157)
T PRK06719 12 HNKVVVII-------GGGKIAYRKASGLKDTGAFVTVVSP----EICKEMKELPYITWKQKTFSND--DIKDAHLIYAAT 78 (157)
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHhCCCEEEEEcC----ccCHHHHhccCcEEEecccChh--cCCCceEEEECC
Confidence 45788887 5556678899999999999999952 233444433 233322111111 123578887754
No 200
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=49.69 E-value=60 Score=37.75 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=52.6
Q ss_pred cccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC-CCChhH----HHh----CC--cEEEE
Q 004760 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR-GGLMPE----LAR----RK--IKVLE 299 (732)
Q Consensus 231 ~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~-g~l~~e----l~~----~g--I~v~~ 299 (732)
|.=.++.+.+.+||+.++ |.|-..+.|++.|.++|.+|..+..... ..+.+. +.. .+ ..++.
T Consensus 303 dal~d~~~~L~GKrvai~-------Gdp~~~i~LarfL~elGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~viv 375 (457)
T CHL00073 303 ESLKDYLDLVRGKSVFFM-------GDNLLEISLARFLIRCGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIV 375 (457)
T ss_pred HHHHHHHHHHCCCEEEEE-------CCCcHHHHHHHHHHHCCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEE
Confidence 445667777889999633 5667788999999999999998874432 222222 322 22 23333
Q ss_pred cCCCch----hhhhcCccEEEeCC
Q 004760 300 DRGEPS----FKTSMKADLVIAGS 319 (732)
Q Consensus 300 ~~~~~~----~~~~~k~DlVia~S 319 (732)
.+.+.. +.+..+||++|+|-
T Consensus 376 e~~D~~el~~~i~~~~pDLlIgG~ 399 (457)
T CHL00073 376 EKPDNYNQIQRIRELQPDLAITGM 399 (457)
T ss_pred eCCCHHHHHHHHhhCCCCEEEccc
Confidence 333332 44577999999984
No 201
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=49.12 E-value=1.9e+02 Score=30.99 Aligned_cols=47 Identities=6% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 681 QVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
+.|.++|..+.++++..++++++|++.+++..+.+.++.-+..++.+
T Consensus 202 ~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~~~Y~~~ll~e 248 (256)
T smart00672 202 RELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDVYDYMFHLLQE 248 (256)
T ss_pred hhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999998888777654
No 202
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=48.29 E-value=37 Score=28.95 Aligned_cols=47 Identities=28% Similarity=0.275 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCCC----------ChhHHHhCCcEEEEcCC
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRGG----------LMPELARRKIKVLEDRG 302 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g~----------l~~el~~~gI~v~~~~~ 302 (732)
|+...-+++|..|.+.|.+|+++...+.-. +.+.+++.||+++....
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~ 62 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTK 62 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEE
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 566677899999999999999998443321 23457788998876543
No 203
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=47.37 E-value=66 Score=31.92 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=48.8
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-------hhHHHhCCcEEEEcCCCchhh-hhcCc
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-------MPELARRKIKVLEDRGEPSFK-TSMKA 312 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l-------~~el~~~gI~v~~~~~~~~~~-~~~k~ 312 (732)
..++|+++......||-. +-+|++|.+.|++|.|+.+.....+ ...+...|++++......... ....+
T Consensus 24 ~~~~v~il~G~GnNGgDg---l~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 100 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDG---LVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPA 100 (169)
T ss_dssp TT-EEEEEE-SSHHHHHH---HHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCE
T ss_pred CCCeEEEEECCCCChHHH---HHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccc
Confidence 467888887776555544 4578999999999999776554433 244678899998766654432 23389
Q ss_pred cEEEe
Q 004760 313 DLVIA 317 (732)
Q Consensus 313 DlVia 317 (732)
|+||-
T Consensus 101 dlIID 105 (169)
T PF03853_consen 101 DLIID 105 (169)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 99943
No 204
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=47.10 E-value=54 Score=35.81 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCC-----------CChhHHHhCCcEEEEcCCCc--h---hhhhcCccEEEe
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEP--S---FKTSMKADLVIA 317 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g-----------~l~~el~~~gI~v~~~~~~~--~---~~~~~k~DlVia 317 (732)
|.+...+...++|.+.|+++..|+...+. ++.+..++.||+++...... . ..++.+||++++
T Consensus 7 G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~ 84 (309)
T PRK00005 7 GTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAALNADVIVV 84 (309)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHhcCcCEEEE
Confidence 66667788888888889998877643221 12345567899997644321 1 344789999954
No 205
>PRK05993 short chain dehydrogenase; Provisional
Probab=46.44 E-value=85 Score=32.88 Aligned_cols=70 Identities=17% Similarity=0.051 Sum_probs=41.0
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch------hhh---h--cCc
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS------FKT---S--MKA 312 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~------~~~---~--~k~ 312 (732)
|.++|+.. +.-.-..+|+.|++.|++|.++. +......++...++.++..+.... +.. . .++
T Consensus 5 k~vlItGa-----sggiG~~la~~l~~~G~~Vi~~~--r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~i 77 (277)
T PRK05993 5 RSILITGC-----SSGIGAYCARALQSDGWRVFATC--RKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRL 77 (277)
T ss_pred CEEEEeCC-----CcHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCc
Confidence 45566533 23333567889999999988776 333334556666777665444322 111 1 368
Q ss_pred cEEEeCCc
Q 004760 313 DLVIAGSA 320 (732)
Q Consensus 313 DlVia~Sa 320 (732)
|+++.+..
T Consensus 78 d~li~~Ag 85 (277)
T PRK05993 78 DALFNNGA 85 (277)
T ss_pred cEEEECCC
Confidence 99877643
No 206
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=46.43 E-value=39 Score=38.36 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=53.4
Q ss_pred cccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-C-hhHHH--hCCcEEEEcCCCch-
Q 004760 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-L-MPELA--RRKIKVLEDRGEPS- 305 (732)
Q Consensus 231 ~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l-~~el~--~~gI~v~~~~~~~~- 305 (732)
|.-.++.....+||++++.. +-.+..+++.|.+.|.+|..+....... . ...++ ..+..|+.......
T Consensus 263 ~~l~~~~~~l~Gkrv~i~gd-------~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l 335 (407)
T TIGR01279 263 RALEPHTQLLRGKKIFFFGD-------NLLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQ 335 (407)
T ss_pred HHHHHHHHhcCCCEEEEECC-------chHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHH
Confidence 33446666778999888632 5688899999999999998777433221 1 22222 12455554443332
Q ss_pred --hhhhcCccEEEeCCc
Q 004760 306 --FKTSMKADLVIAGSA 320 (732)
Q Consensus 306 --~~~~~k~DlVia~Sa 320 (732)
+.+..+||++|.|+.
T Consensus 336 ~~~i~~~~pDllig~~~ 352 (407)
T TIGR01279 336 LQRIRATRPDLVVTGLG 352 (407)
T ss_pred HHHHHhcCCCEEecCcc
Confidence 445789999999983
No 207
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=45.29 E-value=93 Score=31.18 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCCCcHHHHHHHHHHHH--HHCCCEEEEEE
Q 004760 252 LSMTGAPLSMMELATEL--LSCGATVSAVV 279 (732)
Q Consensus 252 ls~gGA~~~~~eLA~~L--~~~G~~V~vv~ 279 (732)
+|.||=-..|+.|++.+ ....++..+++
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt 34 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVT 34 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 67888888999999999 23455666666
No 208
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=44.38 E-value=62 Score=35.46 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=45.3
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-----------CChhHHHhCCcEEEEcCCCc--h---hh
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEP--S---FK 307 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-----------~l~~el~~~gI~v~~~~~~~--~---~~ 307 (732)
||+++ |.+-+.+...++|.+.||+|..|+...+. ++.......+|+++...... . ..
T Consensus 2 kIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l 74 (313)
T TIGR00460 2 RIVFF-------GTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLV 74 (313)
T ss_pred EEEEE-------CCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHH
Confidence 56665 66667778888999999999877643321 12344457899998754433 1 34
Q ss_pred hhcCccEEEeC
Q 004760 308 TSMKADLVIAG 318 (732)
Q Consensus 308 ~~~k~DlVia~ 318 (732)
.+.+||++++-
T Consensus 75 ~~~~~Dliv~~ 85 (313)
T TIGR00460 75 RELKPDVIVVV 85 (313)
T ss_pred HhhCCCEEEEc
Confidence 57899999654
No 209
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=44.18 E-value=43 Score=38.24 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=51.4
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCC-CC-hhHHH--hCCcEEEEcCCCc---h
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRG-GL-MPELA--RRKIKVLEDRGEP---S 305 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~-~G~~V~vv~l~~~g-~l-~~el~--~~gI~v~~~~~~~---~ 305 (732)
.++.+.+.+||++++ |.+-....+|+.|.+ +|.+|..+...... .. .++++ ..++.|+...... .
T Consensus 282 ~~~~~~l~Gkrvai~-------g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~~D~~~l~~ 354 (427)
T PRK02842 282 EPYRELLRGKRVFFL-------PDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEGQDVERQLD 354 (427)
T ss_pred HHhhhhcCCcEEEEE-------CCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEECCCHHHHHH
Confidence 345556778998775 233677889999998 99999888743321 11 22222 2366665543332 2
Q ss_pred hhhhcCccEEEeCCch
Q 004760 306 FKTSMKADLVIAGSAV 321 (732)
Q Consensus 306 ~~~~~k~DlVia~Sav 321 (732)
.....+||++|+|+..
T Consensus 355 ~i~~~~pDllig~~~~ 370 (427)
T PRK02842 355 RIRALRPDLVVCGLGL 370 (427)
T ss_pred HHHHcCCCEEEccCcc
Confidence 4457899999999843
No 210
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=44.16 E-value=63 Score=38.37 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=72.4
Q ss_pred CCCCcEEEccc--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC---------------------
Q 004760 603 NLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG--------------------- 659 (732)
Q Consensus 603 ~l~~~V~f~G~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG--------------------- 659 (732)
.++.-|.=+|. .+++..+++.+-+||=-..- .| |=+.+||+|.|+|.|-.....
T Consensus 319 ~~P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP-~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~S 395 (559)
T PF15024_consen 319 NVPSFVKNHGILSGDEFQQLLRKAKVFIGLGFP-YE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTS 395 (559)
T ss_pred ccchhhhhcCcCCHHHHHHHHHhhhEeeecCCC-CC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceecc
Confidence 34455566663 47999999999999943321 22 447899999999988764321
Q ss_pred ---hhh-hhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 660 ---TKE-IVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 660 ---~~E-iVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
..| .|.. -.-+-++..|. +++-++|+++++++-. . .+=..|+.+.|.+++..++++
T Consensus 396 QhPY~e~~iG~-PhVytVd~~n~--~~v~~Avk~il~~~v~--P-------y~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 396 QHPYAEEFIGE-PHVYTVDINNS--TEVEAAVKAILATPVE--P-------YLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred CChHHHhhCCC-CeEEEEcCCCH--HHHHHHHHHHHhcCCC--C-------cCCcccCHHHHHHHHHHHHHh
Confidence 111 2221 23455666776 8999999999887521 1 222458888888888777654
No 211
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=42.99 E-value=82 Score=33.18 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=42.1
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
+++||+| ||.+.. ..=+..|.+.|++|+||++.-...+........|+++......... ..+++|++-+
T Consensus 25 ~~~VLVV------GGG~VA-~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl--~g~~LViaAT 93 (223)
T PRK05562 25 KIKVLII------GGGKAA-FIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI--KDKHLIVIAT 93 (223)
T ss_pred CCEEEEE------CCCHHH-HHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh--CCCcEEEECC
Confidence 4566666 555555 4555688889999999995433333332334457777655443322 3578887764
No 212
>COG1647 Esterase/lipase [General function prediction only]
Probab=42.72 E-value=44 Score=35.39 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=39.9
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRK 294 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~g 294 (732)
+.+-+|+.| +.||.+.-+-.|+++|.+.|++|++=.+...|.+.+.|-..+
T Consensus 14 G~~AVLllH--GFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~ 64 (243)
T COG1647 14 GNRAVLLLH--GFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTT 64 (243)
T ss_pred CCEEEEEEe--ccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCC
Confidence 345566666 578999999999999999999999988777776666665444
No 213
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.62 E-value=88 Score=36.23 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=43.5
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC--CcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR--KIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~--gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
.++|+++ ++||...+ +|+.|.+.|++|.+.-.....+...+|+.. |+++.......... ..+|+||...
T Consensus 7 ~~~i~v~----G~G~sG~s---~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~--~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVL----GLGESGLA---MARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALL--DGVDLVALSP 77 (498)
T ss_pred CCEEEEE----eecHhHHH---HHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHh--cCCCEEEECC
Confidence 4566554 67776643 889999999998775422211233456666 55655432232222 2689999987
Q ss_pred chh
Q 004760 320 AVC 322 (732)
Q Consensus 320 av~ 322 (732)
++.
T Consensus 78 ~I~ 80 (498)
T PRK02006 78 GLS 80 (498)
T ss_pred CCC
Confidence 764
No 214
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=42.61 E-value=1.2e+02 Score=34.43 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCCEEEcCCCChhhhh----ccCceEEEECC-CCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCH
Q 004760 640 RVTIEAMAFGVPVLGTDAGGTKEIV----EHNVTGLLHPP-GHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLK 714 (732)
Q Consensus 640 ~vilEAMA~GlPVI~td~gG~~EiV----e~g~~Gll~~~-~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~ 714 (732)
...-=-|+||-.|+..... ..|.. ...++-+-+.. ++. .+|.++|..+.+|++..++++++|++.+++.++.
T Consensus 228 ~RlkylL~c~SvVl~~~~~-~~e~f~~~L~P~vHYVPV~~~~d~--sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~ 304 (395)
T PF05686_consen 228 GRLKYLLACNSVVLKVKSP-YYEFFYRALKPWVHYVPVKRDDDL--SDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTM 304 (395)
T ss_pred hhHHHHHcCCceEEEeCCc-HHHHHHhhhcccccEEEeccccch--hhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhh
Confidence 3344447777777765432 23332 22333333333 233 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004760 715 KHMYKKLSQVIYK 727 (732)
Q Consensus 715 ~~~~~~~~ev~~~ 727 (732)
+.++.-+..++..
T Consensus 305 ~~~~~Y~~~LL~e 317 (395)
T PF05686_consen 305 EDVYCYWRRLLLE 317 (395)
T ss_pred hHHHHHHHHHHHH
Confidence 9988877666654
No 215
>PRK10867 signal recognition particle protein; Provisional
Probab=42.46 E-value=1.3e+02 Score=34.75 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=52.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCCCC-ChhH----HHhCCcEEEEcCC--Cch-h-------
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGG-LMPE----LARRKIKVLEDRG--EPS-F------- 306 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~-G~~V~vv~l~~~g~-l~~e----l~~~gI~v~~~~~--~~~-~------- 306 (732)
.++++++ .+...|-...+..||..|.+. |+.|.+|+.....+ .... .+..|++++.... .+. +
T Consensus 100 p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 100 PTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 4555555 577778888999999999998 99999998654322 1222 3567888886532 211 1
Q ss_pred hhhcCccEEEeCCch
Q 004760 307 KTSMKADLVIAGSAV 321 (732)
Q Consensus 307 ~~~~k~DlVia~Sav 321 (732)
.....+|+||..++-
T Consensus 179 a~~~~~DvVIIDTaG 193 (433)
T PRK10867 179 AKENGYDVVIVDTAG 193 (433)
T ss_pred HHhcCCCEEEEeCCC
Confidence 124579999988754
No 216
>PHA02518 ParA-like protein; Provisional
Probab=41.01 E-value=80 Score=31.36 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=38.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
+|+-|...-+..|-.....+||.+|++.|+.|.++-+...+.+...+
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~ 47 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWA 47 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHH
Confidence 46777777788899999999999999999999999877666555433
No 217
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.94 E-value=77 Score=36.28 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=54.8
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC--CCC---ChhHHHhCCcEEEEcCCCch--------h--hhh
Q 004760 245 FILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK--RGG---LMPELARRKIKVLEDRGEPS--------F--KTS 309 (732)
Q Consensus 245 IllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~--~g~---l~~el~~~gI~v~~~~~~~~--------~--~~~ 309 (732)
=++++-.|-..|-..++..||.++.+.|+.+..||... .|. |.+...+.+|+++....... + .++
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 34555678888999999999999999999999999543 232 23344678899886533222 1 126
Q ss_pred cCccEEEeCCc
Q 004760 310 MKADLVIAGSA 320 (732)
Q Consensus 310 ~k~DlVia~Sa 320 (732)
.++|+||..++
T Consensus 182 e~fdvIIvDTS 192 (483)
T KOG0780|consen 182 ENFDVIIVDTS 192 (483)
T ss_pred cCCcEEEEeCC
Confidence 79999999864
No 218
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.67 E-value=91 Score=35.78 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=45.9
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC---CChhHHHhCCcEEEEcCCCchhhhhcCccEEEe
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG---GLMPELARRKIKVLEDRGEPSFKTSMKADLVIA 317 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g---~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia 317 (732)
.+++|++| +.|++ -+++|..|.+.|++|+++-..... .+.+.++..||.++...... ....+|+||.
T Consensus 15 ~~~~v~vi----G~G~~---G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~ 84 (480)
T PRK01438 15 QGLRVVVA----GLGVS---GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVT 84 (480)
T ss_pred CCCEEEEE----CCCHH---HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEE
Confidence 35677766 33443 344688999999998887522211 13356788899987644322 2356899988
Q ss_pred CCchh
Q 004760 318 GSAVC 322 (732)
Q Consensus 318 ~Sav~ 322 (732)
.+.+.
T Consensus 85 s~Gi~ 89 (480)
T PRK01438 85 SPGWR 89 (480)
T ss_pred CCCcC
Confidence 86653
No 219
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=40.56 E-value=2.7e+02 Score=32.10 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=58.9
Q ss_pred cceeEEeccCchhhhhHhhhhhccCCCCC--ChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCC
Q 004760 558 LRRKVLSKSDGKQQQALKILIGSVGSKSN--KVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLG 635 (732)
Q Consensus 558 ~~~~LlivG~G~~~~~Lk~li~~~G~~~~--~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~ 635 (732)
...+++++|-|.+-.-.-..+..-|-..- -+.- .+--+.+++.++ ...+ ..+++..++..+|++++.+ .
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT-~erA~~La~~~~----~~~~-~l~el~~~l~~~DvVissT---s 247 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT-LERAEELAKKLG----AEAV-ALEELLEALAEADVVISST---S 247 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC-HHHHHHHHHHhC----Ceee-cHHHHHHhhhhCCEEEEec---C
Confidence 45689999999665544333322221000 0000 111223333333 1111 2278999999999999876 4
Q ss_pred CCCcHHHHHHHHcC----CCEEEcCCCChhhhhccC---ceEEEECCCCC
Q 004760 636 ETFGRVTIEAMAFG----VPVLGTDAGGTKEIVEHN---VTGLLHPPGHP 678 (732)
Q Consensus 636 Egfg~vilEAMA~G----lPVI~td~gG~~EiVe~g---~~Gll~~~~d~ 678 (732)
.+-|.+--+.+-.+ ...+.-|.+-++++-.+- .+-++++.+|.
T Consensus 248 a~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL 297 (414)
T COG0373 248 APHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDL 297 (414)
T ss_pred CCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhH
Confidence 55555544444333 335788888777644321 23466665554
No 220
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=40.27 E-value=71 Score=36.56 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=44.9
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHH-HHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeC
Q 004760 240 VWSRKFILIFHELSMTGAPLSMME-LATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~e-LA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~ 318 (732)
...++|++| ++||.. +. +|+.|.+.|++|++.=. +......+|+..|+.+.. ....... .++|+|+.+
T Consensus 5 ~~~~~v~vi----G~G~sG---~s~~a~~L~~~G~~V~~~D~-~~~~~~~~l~~~gi~~~~-~~~~~~~--~~~d~vv~s 73 (461)
T PRK00421 5 RRIKRIHFV----GIGGIG---MSGLAEVLLNLGYKVSGSDL-KESAVTQRLLELGAIIFI-GHDAENI--KDADVVVYS 73 (461)
T ss_pred CCCCEEEEE----EEchhh---HHHHHHHHHhCCCeEEEECC-CCChHHHHHHHCCCEEeC-CCCHHHC--CCCCEEEEC
Confidence 345666554 455533 44 68889999999977542 122234567788998875 2222211 269999988
Q ss_pred Cchh
Q 004760 319 SAVC 322 (732)
Q Consensus 319 Sav~ 322 (732)
.++.
T Consensus 74 pgi~ 77 (461)
T PRK00421 74 SAIP 77 (461)
T ss_pred CCCC
Confidence 7765
No 221
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.93 E-value=93 Score=35.41 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=46.4
Q ss_pred hccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh--CCcEEEEcCCCchhhhhcCccEEE
Q 004760 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPSFKTSMKADLVI 316 (732)
Q Consensus 239 ~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~--~gI~v~~~~~~~~~~~~~k~DlVi 316 (732)
||.+--.++| +++||...+ +|+.|.+.|++|.+.=.........+|+. .|+++.......... .++|+|+
T Consensus 2 ~~~~~~~~~v---~G~G~sG~s---~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--~~~d~vV 73 (448)
T PRK03803 2 LMQSDGLHIV---VGLGKTGLS---VVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELL--VQASEII 73 (448)
T ss_pred ccccCCeEEE---EeecHhHHH---HHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHh--cCCCEEE
Confidence 3444444455 567776654 88889999999887653222223345665 388887543332222 2689999
Q ss_pred eCCchh
Q 004760 317 AGSAVC 322 (732)
Q Consensus 317 a~Sav~ 322 (732)
.+.++.
T Consensus 74 ~sp~i~ 79 (448)
T PRK03803 74 ISPGLA 79 (448)
T ss_pred ECCCCC
Confidence 988765
No 222
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.38 E-value=1.6e+02 Score=35.75 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=72.4
Q ss_pred CC-CCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhh-----ccCceEEEEC
Q 004760 603 NL-SKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIV-----EHNVTGLLHP 674 (732)
Q Consensus 603 ~l-~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiV-----e~g~~Gll~~ 674 (732)
|+ +++|+|.+-. ++=..-++-||+.+-+.- .- .-.+-.|.+.+|+|+|+-...-...-| ..-..|-++.
T Consensus 812 Gl~p~riifs~va~k~eHvrr~~LaDv~LDTpl--cn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 812 GLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPL--CN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred CCCccceeeccccchHHHHHhhhhhhhcccCcC--cC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 55 4789998732 555567788998875442 11 223557889999999986432211111 1101222222
Q ss_pred CCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHhh
Q 004760 675 PGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKV--ERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 675 ~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v--~~~ys~~~~~~~~~ev~~~~l 729 (732)
. +. ++..+.-.+|-.|.+..+.+...-++.- ..-|+-.+++..+..+|.+..
T Consensus 889 k-~~--eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW 942 (966)
T KOG4626|consen 889 K-NR--EEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMW 942 (966)
T ss_pred h-hH--HHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHH
Confidence 1 12 5667766777778887777766554432 245777888888887776654
No 223
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=38.86 E-value=2.9e+02 Score=32.34 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=61.9
Q ss_pred cEEEccchhhHHHHHHHc--CEEEEccCCCCCCCcHHHHHHHHc---CCCEEE-cCCCChhhh---hccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYSAA--DVYVINSQGLGETFGRVTIEAMAF---GVPVLG-TDAGGTKEI---VEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysaA--Dv~V~pS~~~~Egfg~vilEAMA~---GlPVI~-td~gG~~Ei---Ve~g~~Gll~~~~d 677 (732)
.|.......+....+... |++++-.+ +.+.-|+.+++.+.. ++|||. |..|.+... +..|..-++..|-+
T Consensus 30 ~v~~a~~~~~al~~i~~~~~~lvl~Di~-mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~ 108 (464)
T COG2204 30 EVVTAESAEEALEALSESPFDLVLLDIR-MPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFD 108 (464)
T ss_pred eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCC
Confidence 455555555655666555 55555544 677788999888766 699987 555664444 45677888999998
Q ss_pred CcHHHHHHHHHHHhcCHHHH
Q 004760 678 PGAQVLAQNLRYLLKNPSVR 697 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~~r 697 (732)
. +.|...+.+.++.....
T Consensus 109 ~--~~L~~~v~ral~~~~~~ 126 (464)
T COG2204 109 L--DRLLAIVERALELRELQ 126 (464)
T ss_pred H--HHHHHHHHHHHHHhhhh
Confidence 8 99999999998865543
No 224
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=38.11 E-value=71 Score=27.80 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=29.6
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVL 280 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l 280 (732)
+|-+|+|+|.+. .-.....++|..|.++|+.|...-.
T Consensus 15 ~k~~v~i~HG~~--eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFG--EHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcH--HHHHHHHHHHHHHHhCCCEEEEECC
Confidence 478999999883 3333578999999999999987754
No 225
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=37.05 E-value=1.1e+02 Score=33.69 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=45.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-----------ChhHHHhCCcEEEEcCCCch-----h
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-----------LMPELARRKIKVLEDRGEPS-----F 306 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-----------l~~el~~~gI~v~~~~~~~~-----~ 306 (732)
.||+|+ |.|-......+.|..+||+|..|+...+.+ ......+.||+|+.....+. .
T Consensus 2 mkivF~-------GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~ 74 (307)
T COG0223 2 MRIVFF-------GTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEE 74 (307)
T ss_pred cEEEEE-------cCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHH
Confidence 356665 666666666778888999999988544321 23345678999876543332 4
Q ss_pred hhhcCccEEEeC
Q 004760 307 KTSMKADLVIAG 318 (732)
Q Consensus 307 ~~~~k~DlVia~ 318 (732)
.+..+||++++-
T Consensus 75 l~~l~~D~ivvv 86 (307)
T COG0223 75 LAALDPDLIVVV 86 (307)
T ss_pred HhccCCCEEEEE
Confidence 447799999553
No 226
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.81 E-value=90 Score=35.53 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=50.5
Q ss_pred cchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-hhHH------HhCCcEEEEcCCCch
Q 004760 233 KGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-MPEL------ARRKIKVLEDRGEPS 305 (732)
Q Consensus 233 ~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l-~~el------~~~gI~v~~~~~~~~ 305 (732)
-.++.....++||+++ |.+-.+..|++.|.+.|.+|..++.....+. .+.+ ......++.......
T Consensus 290 ~~~~~~~l~gk~v~i~-------~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~e 362 (428)
T cd01965 290 MLDSHFYLGGKRVAIA-------GDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWD 362 (428)
T ss_pred HHHHHHHhcCCEEEEE-------cChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHH
Confidence 3444556788999876 3344788999999999999988775443322 2222 112233444433322
Q ss_pred ---hhhhcCccEEEeCCc
Q 004760 306 ---FKTSMKADLVIAGSA 320 (732)
Q Consensus 306 ---~~~~~k~DlVia~Sa 320 (732)
..++.+||+|+.++.
T Consensus 363 l~~~i~~~~pdliig~~~ 380 (428)
T cd01965 363 LESLAKEEPVDLLIGNSH 380 (428)
T ss_pred HHHHhhccCCCEEEECch
Confidence 344678999998874
No 227
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=36.50 E-value=92 Score=31.61 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=22.6
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
.+|++++. ||+.-.-..+|++|.+.|++|.++.
T Consensus 4 ~~k~vlIt------Gas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 4 EGKVALVT------GANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCEEEEE------CCCchHHHHHHHHHHHCCCEEEEEc
Confidence 34555544 3334456678899999999988876
No 228
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=36.39 E-value=1.3e+02 Score=29.03 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=46.4
Q ss_pred cchhhhhc-cCCeEEEEeCCCCC----CcHHHHHHHHHHHHHHCCCEEEEEEeCC--CCCChhHHHhCCc
Q 004760 233 KGDFARFV-WSRKFILIFHELSM----TGAPLSMMELATELLSCGATVSAVVLSK--RGGLMPELARRKI 295 (732)
Q Consensus 233 ~~~~~~~~-~~~kIllI~h~ls~----gGA~~~~~eLA~~L~~~G~~V~vv~l~~--~g~l~~el~~~gI 295 (732)
-.+++.+. ..|.|++.|+.-.. --....+.+|+..|.+.|++|.++.... ..++.+-+...|-
T Consensus 58 ~p~L~~~~~~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~KGiDD~l~~~G~ 127 (130)
T PF12965_consen 58 IPELAKLAKPGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGKGIDDLLAAKGP 127 (130)
T ss_pred chhHHHhccCCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCCHhHHHHhcCc
Confidence 35666775 56889999888643 3456778999999999999999999772 3356666666654
No 229
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=36.10 E-value=4.5e+02 Score=26.17 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=49.4
Q ss_pred chhhHHHHHH--HcCEEEEccCCCCC---CCcHHHHHHHH---cCCCEEEc-CCCC---hhhhhccCceEEEECCCCCcH
Q 004760 613 ATTRVASLYS--AADVYVINSQGLGE---TFGRVTIEAMA---FGVPVLGT-DAGG---TKEIVEHNVTGLLHPPGHPGA 680 (732)
Q Consensus 613 ~~~dv~~lys--aADv~V~pS~~~~E---gfg~vilEAMA---~GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~d~~~ 680 (732)
..++....+. ..|++++... +.+ .-|.-+++.+. ..+|+|.- +... ..+.++.|..|++..+.+.
T Consensus 37 ~~~~~~~~~~~~~~DlvllD~~-l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~-- 113 (216)
T PRK10840 37 DSTALINNLPKLDAHVLITDLS-MPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAP-- 113 (216)
T ss_pred CHHHHHHHHHhCCCCEEEEeCc-CCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCH--
Confidence 3344444444 3788887654 122 25677777764 34677653 3333 2344677899999998877
Q ss_pred HHHHHHHHHHhc
Q 004760 681 QVLAQNLRYLLK 692 (732)
Q Consensus 681 e~La~aL~~LL~ 692 (732)
+.|.+++..++.
T Consensus 114 ~~l~~ai~~v~~ 125 (216)
T PRK10840 114 TDLPKALAALQK 125 (216)
T ss_pred HHHHHHHHHHHC
Confidence 899999988765
No 230
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=36.07 E-value=3.5e+02 Score=25.81 Aligned_cols=67 Identities=10% Similarity=0.211 Sum_probs=47.4
Q ss_pred HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCCh----hhhhccCceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 623 AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT----KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 623 aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~----~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
..|++++... +.+.-|..+++.+....|+|....... .+.+..+..+++..+.+. +.+.+++..++.
T Consensus 47 ~~dlvi~d~~-~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~--~~l~~~i~~~~~ 117 (196)
T PRK10360 47 GVQVCICDIS-MPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP--DELIAAVHTVAT 117 (196)
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHHHc
Confidence 3688887654 345567778888877888877533222 234566788999988777 899999988765
No 231
>PRK06182 short chain dehydrogenase; Validated
Probab=36.04 E-value=1.2e+02 Score=31.38 Aligned_cols=70 Identities=21% Similarity=0.158 Sum_probs=39.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--hhh--------hcCcc
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--FKT--------SMKAD 313 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--~~~--------~~k~D 313 (732)
|.++|+...+ -.-..+|++|.+.|++|.++. +...-.+++...++.++..+.... +.. ..++|
T Consensus 4 k~vlItGasg-----giG~~la~~l~~~G~~V~~~~--r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 4 KVALVTGASS-----GIGKATARRLAAQGYTVYGAA--RRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CEEEEECCCC-----hHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4556654332 233458889999999998776 222222344455666665443221 111 23789
Q ss_pred EEEeCCc
Q 004760 314 LVIAGSA 320 (732)
Q Consensus 314 lVia~Sa 320 (732)
++|.+..
T Consensus 77 ~li~~ag 83 (273)
T PRK06182 77 VLVNNAG 83 (273)
T ss_pred EEEECCC
Confidence 8877653
No 232
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=35.45 E-value=71 Score=36.67 Aligned_cols=82 Identities=26% Similarity=0.234 Sum_probs=52.6
Q ss_pred ccccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--hhh
Q 004760 230 CDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFK 307 (732)
Q Consensus 230 ~~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--~~~ 307 (732)
-|+=.++...+.++||.+.. .+-.+..|++.|.+.|.+|..+......+....+... .++..+... .+.
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~-------~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~--~~~~~D~~~l~~~i 369 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAA-------EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVE--TVVIGDLEDLEDLA 369 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcC--cEEeCCHHHHHHHH
Confidence 34455666677889987763 3347789999999999999998866555443332222 222222211 144
Q ss_pred hhcCccEEEeCCc
Q 004760 308 TSMKADLVIAGSA 320 (732)
Q Consensus 308 ~~~k~DlVia~Sa 320 (732)
++.++|++|.+|.
T Consensus 370 ~~~~~dliig~s~ 382 (432)
T TIGR01285 370 CAAGADLLITNSH 382 (432)
T ss_pred hhcCCCEEEECcc
Confidence 4678999998873
No 233
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.10 E-value=3.1e+02 Score=29.31 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=59.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCC----c-hh---hh---hcC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE----P-SF---KT---SMK 311 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~----~-~~---~~---~~k 311 (732)
.+|.+|...-+.-|.......||.+|++.|..|.++-..........+...+...+..... . .+ .. ..+
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~~~i~~r~fD~Lve~i~~~~ 81 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMDGDEINTRNFDALVEMIASTE 81 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceecccCCccchhhHHHHHHHHhccC
Confidence 4677777777777889999999999999999998887554444333333333322222111 0 11 11 345
Q ss_pred ccEEEeCCchhhHHHHHHH------Hhhc-CCCccEEEEEeec
Q 004760 312 ADLVIAGSAVCATWIDQYI------TRFP-AGGSQVVWWIMEN 347 (732)
Q Consensus 312 ~DlVia~Sav~~~~i~~~i------~~~~-~~~~~ivw~i~e~ 347 (732)
-|+||-+.+-...-+..|+ .... .+..-++||+..-
T Consensus 82 ~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~g 124 (241)
T PRK13886 82 GDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTG 124 (241)
T ss_pred CCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECC
Confidence 6888877653322222332 1122 3445577777543
No 234
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.42 E-value=1.6e+02 Score=30.11 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=40.9
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--hhh--------hcCcc
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--FKT--------SMKAD 313 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--~~~--------~~k~D 313 (732)
|.++|+...+.-| ..+|+.|.+.|++|.++. .+......++...++.++..+.... +.. ..++|
T Consensus 8 k~~lItGas~gIG-----~~~a~~l~~~G~~v~~~~-~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (255)
T PRK06463 8 KVALITGGTRGIG-----RAIAEAFLREGAKVAVLY-NSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVD 81 (255)
T ss_pred CEEEEeCCCChHH-----HHHHHHHHHCCCEEEEEe-CCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5566655433333 457899999999987765 3333334455555666554433221 111 23689
Q ss_pred EEEeCCch
Q 004760 314 LVIAGSAV 321 (732)
Q Consensus 314 lVia~Sav 321 (732)
+||.+..+
T Consensus 82 ~li~~ag~ 89 (255)
T PRK06463 82 VLVNNAGI 89 (255)
T ss_pred EEEECCCc
Confidence 98776543
No 235
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=34.28 E-value=1.3e+02 Score=33.78 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=54.2
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC-CCCChhH----HHhCCcEEEEc--CCCch--------hh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK-RGGLMPE----LARRKIKVLED--RGEPS--------FK 307 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~-~g~l~~e----l~~~gI~v~~~--~~~~~--------~~ 307 (732)
+-.++++-.....|-...+--||..|.+.|+.|.+..... +-+-.++ -++.|++++.. ++++. -.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 3455555566777889999999999999999999987322 1122223 36889999984 33443 23
Q ss_pred hhcCccEEEeCCc
Q 004760 308 TSMKADLVIAGSA 320 (732)
Q Consensus 308 ~~~k~DlVia~Sa 320 (732)
.+.++|+|++.||
T Consensus 218 kar~~DvvliDTA 230 (340)
T COG0552 218 KARGIDVVLIDTA 230 (340)
T ss_pred HHcCCCEEEEeCc
Confidence 3789999988763
No 236
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.18 E-value=1.3e+02 Score=35.01 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=30.3
Q ss_pred eEEEEeCCCCCCcH-------HHHHHHHHHHHHHCC-CEEEEEE
Q 004760 244 KFILIFHELSMTGA-------PLSMMELATELLSCG-ATVSAVV 279 (732)
Q Consensus 244 kIllI~h~ls~gGA-------~~~~~eLA~~L~~~G-~~V~vv~ 279 (732)
||+||.+....+|+ |+.+.-||..|.+.| |+|.++-
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD 44 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLD 44 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEec
Confidence 68889887766664 778999999999999 8999985
No 237
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=33.93 E-value=1.8e+02 Score=31.40 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 256 GAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
|=-.-.+.+|.+|.+ ||+|.+++
T Consensus 12 GH~~r~~ala~~L~~-g~ev~~~~ 34 (321)
T TIGR00661 12 GHTTRSVAIGEALKN-DYEVSYIA 34 (321)
T ss_pred cHHHHHHHHHHHHhC-CCeEEEEE
Confidence 434457789999999 99999887
No 238
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=33.86 E-value=1.9e+02 Score=31.04 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=50.5
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC--C---CChhHHHhCCcEEEEcCCCc---h-----hh-
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--G---GLMPELARRKIKVLEDRGEP---S-----FK- 307 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~--g---~l~~el~~~gI~v~~~~~~~---~-----~~- 307 (732)
+.+++.++ .....|-...+..||..|++.|+.|.++..... + .+....+..+++++...... . +.
T Consensus 71 ~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 71 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 45666666 455567777889999999999999999985431 1 12223467788887543321 1 11
Q ss_pred -hhcCccEEEeCCc
Q 004760 308 -TSMKADLVIAGSA 320 (732)
Q Consensus 308 -~~~k~DlVia~Sa 320 (732)
...++|+|+..++
T Consensus 150 ~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 150 AKARNIDVVLIDTA 163 (272)
T ss_pred HHHCCCCEEEEeCC
Confidence 1456898887764
No 239
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=33.35 E-value=2.4e+02 Score=29.86 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=30.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVL 280 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l 280 (732)
+++.|+.. +..|-...+..|+.+|.+.|+.|.++-.
T Consensus 2 ~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 46666665 7889999999999999999999999964
No 240
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=33.14 E-value=1.7e+02 Score=33.01 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=58.2
Q ss_pred cchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC-CCCC-hhHHH--hCCcEEEEcCCCch---
Q 004760 233 KGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK-RGGL-MPELA--RRKIKVLEDRGEPS--- 305 (732)
Q Consensus 233 ~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~-~g~l-~~el~--~~gI~v~~~~~~~~--- 305 (732)
-.++.....+||++++.. +.....+++.|.+.|.+|..+.... .... .+.++ ..++.|........
T Consensus 267 l~~~~~~l~Gkrv~i~g~-------~~~~~~la~~L~elGm~vv~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~ 339 (396)
T cd01979 267 LEPYLDLLRGKSIFFMGD-------NLLEIPLARFLTRCGMIVVEVGTPYLDKRFQAAELELLPPMVRIVEKPDNYRQLD 339 (396)
T ss_pred HHHHHHhhcCCEEEEECC-------chHHHHHHHHHHHCCCEEEeeCCCcCChHHHHHHHHhcCCCCeEEECCCHHHHHH
Confidence 345566678899877632 3478899999999999998875321 1111 11222 13555554433322
Q ss_pred hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEee
Q 004760 306 FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME 346 (732)
Q Consensus 306 ~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e 346 (732)
..++.+||++|+|-..+ +.....|.| +.|.+-.
T Consensus 340 ~i~~~~pDlli~~~~~a-------~pl~r~G~P-~~dr~~~ 372 (396)
T cd01979 340 RIRELRPDLVVTGLGLA-------NPLEARGIT-TKWSIEF 372 (396)
T ss_pred HHHhcCCCEEEeccccc-------CcHHhCCCc-ceeecce
Confidence 45578999999973221 122334444 7777643
No 241
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=33.04 E-value=94 Score=32.75 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=37.2
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK 282 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~ 282 (732)
.+.|++.|+...+..|......+||..|++.|..|.+|=..-
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~ 142 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 357999999999999999999999999999999999886543
No 242
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.02 E-value=2.1e+02 Score=32.80 Aligned_cols=80 Identities=23% Similarity=0.251 Sum_probs=50.4
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-ChhH----HHh----CCcEEEEcCCCc
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPE----LAR----RKIKVLEDRGEP 304 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~~e----l~~----~gI~v~~~~~~~ 304 (732)
.++.+...++|+.+.. .+-.++.||+.|.+.|.+|..+....... +.++ +.. .++.|+......
T Consensus 295 ~~~~~~l~gkrv~i~g-------~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~ 367 (435)
T cd01974 295 TDSHQYLHGKKFALYG-------DPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLW 367 (435)
T ss_pred HHHHHhcCCCEEEEEc-------ChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHH
Confidence 3455566789997763 35568999999999999997766433222 2222 222 145565543322
Q ss_pred h---hhhhcCccEEEeCCc
Q 004760 305 S---FKTSMKADLVIAGSA 320 (732)
Q Consensus 305 ~---~~~~~k~DlVia~Sa 320 (732)
. .....+||++|.+|.
T Consensus 368 e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 368 HLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred HHHHHHhhcCCCEEEECcc
Confidence 2 335778999998874
No 243
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=33.00 E-value=4.2e+02 Score=29.20 Aligned_cols=114 Identities=18% Similarity=0.070 Sum_probs=58.8
Q ss_pred eeeccCCcchhhhcccCcccccccccccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 206 LLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
..+||.-........|.+. ...+.+++|+-....+..+..+-.++..|.+.+..+.+.+. .+.
T Consensus 203 ~~~Gp~~~~~~~~~~~~~~---------------~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g--~~~ 265 (392)
T TIGR01426 203 TFVGPCIGDRKEDGSWERP---------------GDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVG--RGV 265 (392)
T ss_pred EEECCCCCCccccCCCCCC---------------CCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEEC--CCC
Confidence 3678854333333446653 12456777754443344455667788889888887766652 221
Q ss_pred ChhHHH--hCCcEEEEcCCCchhhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEE
Q 004760 286 LMPELA--RRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWW 343 (732)
Q Consensus 286 l~~el~--~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~ 343 (732)
-...+. ..++.+...-....+ -...|++|+|+... .......+|.|.++..
T Consensus 266 ~~~~~~~~~~~v~~~~~~p~~~l--l~~~~~~I~hgG~~-----t~~Eal~~G~P~v~~p 318 (392)
T TIGR01426 266 DPADLGELPPNVEVRQWVPQLEI--LKKADAFITHGGMN-----STMEALFNGVPMVAVP 318 (392)
T ss_pred ChhHhccCCCCeEEeCCCCHHHH--HhhCCEEEECCCch-----HHHHHHHhCCCEEecC
Confidence 112222 233443321111112 23578998876422 2344456677766543
No 244
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=32.96 E-value=3e+02 Score=29.12 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEEcC--CC
Q 004760 588 VPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMA-----FGVPVLGTD--AG 658 (732)
Q Consensus 588 ~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~td--~g 658 (732)
++.+.++-+...+....=..|-..+..++...++. +.|+.++--. +..+-|+.++..+- +.+-+|+.. .-
T Consensus 9 D~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiY-mPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~ 87 (224)
T COG4565 9 DPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIY-MPDGNGIELLPELRSQHYPVDVIVITAASDME 87 (224)
T ss_pred chHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCCCEEEEeec-cCCCccHHHHHHHHhcCCCCCEEEEeccchHH
Confidence 44555555544444322122222234467777777 7788777554 58889999998886 333333322 23
Q ss_pred ChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHH
Q 004760 659 GTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPS 695 (732)
Q Consensus 659 G~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~ 695 (732)
-+.+.+.-|.-.+++.|-.. +-|-+++.++.....
T Consensus 88 tI~~alr~Gv~DYLiKPf~~--eRl~~aL~~y~~~r~ 122 (224)
T COG4565 88 TIKEALRYGVVDYLIKPFTF--ERLQQALTRYRQKRH 122 (224)
T ss_pred HHHHHHhcCchhheecceeH--HHHHHHHHHHHHHHH
Confidence 35566667777888888776 888888888765443
No 245
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=32.70 E-value=1.2e+02 Score=30.36 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=37.7
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
...|++.|+..-+..|......+||..|++.|+.|.+|=+...++
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNS 59 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCh
Confidence 347888888888888999999999999999999998887554443
No 246
>PLN02285 methionyl-tRNA formyltransferase
Probab=32.28 E-value=1.5e+02 Score=32.97 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=39.0
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHH------CCCEEEEEEeCCCCC-----------ChhHHHhCCcE---EEEcC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLS------CGATVSAVVLSKRGG-----------LMPELARRKIK---VLEDR 301 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~------~G~~V~vv~l~~~g~-----------l~~el~~~gI~---v~~~~ 301 (732)
+.||+|+ |.+-+.....++|.. .+++|..|+...+.. ......+.||+ ++...
T Consensus 6 ~~kI~f~-------Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~ 78 (334)
T PLN02285 6 KKRLVFL-------GTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPE 78 (334)
T ss_pred ccEEEEE-------ECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCcc
Confidence 4678877 544444444455554 378888877554332 23455678999 43222
Q ss_pred CC--ch---hhhhcCccEEE
Q 004760 302 GE--PS---FKTSMKADLVI 316 (732)
Q Consensus 302 ~~--~~---~~~~~k~DlVi 316 (732)
.. .. ..++.+||+++
T Consensus 79 ~~~~~~~~~~l~~~~~Dliv 98 (334)
T PLN02285 79 KAGEEDFLSALRELQPDLCI 98 (334)
T ss_pred ccCCHHHHHHHHhhCCCEEE
Confidence 11 11 34478999993
No 247
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=32.05 E-value=1.8e+02 Score=29.40 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=42.3
Q ss_pred eEEEEeCCCCCCc-HHHHHHHHHHHHHH-CCCEEEEEEeCCCCCChhHH-HhCCcEEEEcCCCchhhhhcCccEEEeCCc
Q 004760 244 KFILIFHELSMTG-APLSMMELATELLS-CGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEPSFKTSMKADLVIAGSA 320 (732)
Q Consensus 244 kIllI~h~ls~gG-A~~~~~eLA~~L~~-~G~~V~vv~l~~~g~l~~el-~~~gI~v~~~~~~~~~~~~~k~DlVia~Sa 320 (732)
||++|.++. +| ....+-.++..+.+ .|++|.++.+... +.... ...+.+............-.++|.|+.+|.
T Consensus 3 kilIvy~S~--~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 3 KVLVLYYSM--YGHIETMAEAVAEGAREVAGAEVTIKRVPET--VPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred eEEEEEcCC--CCHHHHHHHHHHHHHhhcCCcEEEEEecccc--CCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 788888887 46 55556667777877 8999999987543 22222 122211100000011333457888888764
Q ss_pred h
Q 004760 321 V 321 (732)
Q Consensus 321 v 321 (732)
.
T Consensus 79 t 79 (200)
T PRK03767 79 T 79 (200)
T ss_pred c
Confidence 4
No 248
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=31.85 E-value=67 Score=36.62 Aligned_cols=69 Identities=25% Similarity=0.279 Sum_probs=44.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchh
Q 004760 250 HELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (732)
Q Consensus 250 h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~ 322 (732)
|-.+.||+. |.-||..|.+.|++|++.=..........|+..|++++.......+ ...+|+||.++++.
T Consensus 3 hfigigG~g--m~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~--~~~~d~vV~SpgI~ 71 (448)
T TIGR01081 3 HILGICGTF--MGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQL--EPKPDLVVIGNAMK 71 (448)
T ss_pred EEEEECHHh--HHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHC--CCCCCEEEECCCCC
Confidence 445677765 5678999999999987643211111234577789988753322211 12589999998775
No 249
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=31.83 E-value=2.7e+02 Score=29.86 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC-CcEEEEcCCCch----hhhhcCccEEEeCCchhhHHHHHHH
Q 004760 261 MMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPS----FKTSMKADLVIAGSAVCATWIDQYI 330 (732)
Q Consensus 261 ~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~-gI~v~~~~~~~~----~~~~~k~DlVia~Sav~~~~i~~~i 330 (732)
--.||..|.+.||+|.+.+-+..+. +.+... +.+++....... +.+..++|+||--++-.+.-+...+
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~--~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a 84 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGK--HLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNA 84 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCcc--ccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHH
Confidence 7789999999999999888555442 223333 456765554433 5568899999877765555555443
No 250
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=31.60 E-value=1.1e+02 Score=32.93 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=57.0
Q ss_pred cchhhhh-ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-----Ch----hHHHhCCcEEEEcCC
Q 004760 233 KGDFARF-VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-----LM----PELARRKIKVLEDRG 302 (732)
Q Consensus 233 ~~~~~~~-~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-----l~----~el~~~gI~v~~~~~ 302 (732)
.|+|++. +.+--|+.|..+++.-=.|..+.+++.+|++.|..++++.|....+ +. ....+..+.|+..+.
T Consensus 60 ~Gt~~e~Pl~g~eV~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i~L~~G~G~~~~gl~~~E~~~I~~Hd~AV~~~Gn 139 (268)
T PF04609_consen 60 RGTISEAPLAGTEVAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMIGLARGSGGRIFGLTPKEIEQINEHDLAVFHLGN 139 (268)
T ss_pred ccEEEEccCCCCcEEEEeCCcccccCCCcHHHHHHHHHHcCCccceEEEeccCCCCccCCCHHHHHHHhhcCEEEEEeCC
Confidence 5777776 5668899999999999999999999999999999999999876432 21 223466677777666
Q ss_pred Cch
Q 004760 303 EPS 305 (732)
Q Consensus 303 ~~~ 305 (732)
..+
T Consensus 140 ~~~ 142 (268)
T PF04609_consen 140 FKS 142 (268)
T ss_pred HHH
Confidence 554
No 251
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.05 E-value=2e+02 Score=32.74 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=44.1
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh--CCcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~--~gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
.++|+++ +.||...+ .|+.|++.|++|.+.-.........+++. .|+++........ ....+|+|+...
T Consensus 5 ~~~~~v~----G~g~~G~~---~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~--~~~~~d~vv~sp 75 (445)
T PRK04308 5 NKKILVA----GLGGTGIS---MIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDA--LDNGFDILALSP 75 (445)
T ss_pred CCEEEEE----CCCHHHHH---HHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHH--HHhCCCEEEECC
Confidence 4566544 34554444 48889999999887753332223445654 4888765432221 124689999988
Q ss_pred chh
Q 004760 320 AVC 322 (732)
Q Consensus 320 av~ 322 (732)
++.
T Consensus 76 gi~ 78 (445)
T PRK04308 76 GIS 78 (445)
T ss_pred CCC
Confidence 775
No 252
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=30.50 E-value=2.2e+02 Score=30.24 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=33.3
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG 659 (732)
+++.+++..+|+++..+. .+...-.+..|+..|+|||....|-
T Consensus 52 ~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTTGF 94 (257)
T ss_pred CCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 677788888999886664 5666667888999999999875443
No 253
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=30.03 E-value=98 Score=31.80 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=33.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK 282 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~ 282 (732)
||+.|+..-+..|......+||..|++.|+.|.+|=+..
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~ 40 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADI 40 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 577788888888999999999999999999999886544
No 254
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=29.98 E-value=1.9e+02 Score=33.34 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=46.3
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-ChhHH---HhCCcEEEEcCCCch---h
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPEL---ARRKIKVLEDRGEPS---F 306 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~~el---~~~gI~v~~~~~~~~---~ 306 (732)
.++...+.++|+++... . -....+++.|.+.|.+|..+....... -...+ ...++.++....... +
T Consensus 318 ~~~~~~L~Gkrv~i~~g------~-~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~~~d~~e~~~~ 390 (456)
T TIGR01283 318 EPYRERLKGKKAAIYTG------G-VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLDDANPRELLKL 390 (456)
T ss_pred HHHHHHcCCCEEEEEcC------C-chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEeCCCHHHHHHH
Confidence 35666677899976432 1 455688888999999998875332211 11122 123444443322222 4
Q ss_pred hhhcCccEEEeCC
Q 004760 307 KTSMKADLVIAGS 319 (732)
Q Consensus 307 ~~~~k~DlVia~S 319 (732)
....+||++|.++
T Consensus 391 i~~~~pDl~ig~~ 403 (456)
T TIGR01283 391 LLEYKADLLIAGG 403 (456)
T ss_pred HhhcCCCEEEEcc
Confidence 4578999998875
No 255
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=29.76 E-value=1.8e+02 Score=29.43 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=63.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchhh
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCA 323 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~~ 323 (732)
||+++ |--.||..+...+.-.+-. .|++++++|..+..-- +-+|-.+.-. ..+.....+|+|++.|.+--
T Consensus 2 ~ILll--e~y~ggSHk~~~~~L~~~~--~~~~~lltLP~r~w~W---RmRg~AL~~a---~~~~~~~~~dll~aTsmldL 71 (168)
T PF12038_consen 2 RILLL--EPYYGGSHKQWADGLAAHS--EHEWTLLTLPARKWHW---RMRGAALYFA---QQIPLSHSYDLLFATSMLDL 71 (168)
T ss_pred eEEEE--ccccccCHHHHHHHHHHhc--cCCEEEEEcCCCcccc---ccCCCHHHHh---hccccccCCCEEEeeccccH
Confidence 56665 4456788877665444432 5889999975543210 1111111111 11223556799999987654
Q ss_pred HHHHHHHHhhcCCCccEEEEEeechhHhHHHhh----------hhhc--cccEEEEecHHhHHH
Q 004760 324 TWIDQYITRFPAGGSQVVWWIMENRREYFDRAK----------LVLD--RVKLLVFLSESQTKQ 375 (732)
Q Consensus 324 ~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~----------~~l~--r~~~li~vS~~~~~~ 375 (732)
+-+-++.. -.+. .+.+-+.|||.-.|..... .... .++.++|-|+.....
T Consensus 72 a~l~gL~p-~l~~-~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~s 133 (168)
T PF12038_consen 72 ATLRGLRP-DLAN-VPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDS 133 (168)
T ss_pred HHHHhhcc-CCCC-CCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHH
Confidence 33333222 2233 3455568887654432110 1111 178899999887554
No 256
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=29.61 E-value=88 Score=35.98 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=47.7
Q ss_pred hhhhhccCCeEEEEeCCCCCCcHHHHHHHHHH-HHHHCCCEEEEEEeCC--CCCChhHHHhCCc-EEEEcCCCch----h
Q 004760 235 DFARFVWSRKFILIFHELSMTGAPLSMMELAT-ELLSCGATVSAVVLSK--RGGLMPELARRKI-KVLEDRGEPS----F 306 (732)
Q Consensus 235 ~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~-~L~~~G~~V~vv~l~~--~g~l~~el~~~gI-~v~~~~~~~~----~ 306 (732)
++.+.+.+||+++... .+ ..+.+++ .+.+.|.+|..+.... ...+.+.+....- .++....... .
T Consensus 310 ~~~~~l~gkrvai~~~------~~-~~~~~~~~ll~elGm~v~~~~~~~~~~~~~~~~l~~l~~~~~~v~~~~~~e~~~~ 382 (443)
T TIGR01862 310 YYKERLQGKRVCLYIG------GS-RLWHWIGSAEEDLGMEVVAVGYEFAHEDDYEKTMKRMGEGTLLIDDPNELEFEEI 382 (443)
T ss_pred HHHHHhcCCeEEEECC------ch-hHHHHHHHHHHHCCCEEEEeccccccHHHHHHHHHhCCCceEEecCCCHHHHHHH
Confidence 4666677899988532 22 4446777 6678999998885332 2234455544322 4444333222 2
Q ss_pred hhhcCccEEEeCCc
Q 004760 307 KTSMKADLVIAGSA 320 (732)
Q Consensus 307 ~~~~k~DlVia~Sa 320 (732)
..+.+||++|.+|.
T Consensus 383 i~~~~pdllig~s~ 396 (443)
T TIGR01862 383 LEKLKPDIIFSGIK 396 (443)
T ss_pred HHhcCCCEEEEcCc
Confidence 35779999998873
No 257
>PRK06483 dihydromonapterin reductase; Provisional
Probab=29.30 E-value=2.8e+02 Score=27.87 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcC
Q 004760 259 LSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDR 301 (732)
Q Consensus 259 ~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~ 301 (732)
-.=..+|+.|++.|++|.++.- ......+.+...++.++..+
T Consensus 13 gIG~~ia~~l~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~D 54 (236)
T PRK06483 13 RIGLALAWHLLAQGQPVIVSYR-THYPAIDGLRQAGAQCIQAD 54 (236)
T ss_pred hHHHHHHHHHHHCCCeEEEEeC-CchhHHHHHHHcCCEEEEcC
Confidence 3445778899999999888762 22234455555566555444
No 258
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=29.06 E-value=6.8e+02 Score=26.40 Aligned_cols=143 Identities=14% Similarity=0.138 Sum_probs=66.7
Q ss_pred ceeEEeccCchhh-hhHhhhhhccCCCCC--ChhhHHHHHHHHHhcCCCCCcEEEccchhhHHHHHHHcCEEEEccCCCC
Q 004760 559 RRKVLSKSDGKQQ-QALKILIGSVGSKSN--KVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLG 635 (732)
Q Consensus 559 ~~~LlivG~G~~~-~~Lk~li~~~G~~~~--~~~y~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~ 635 (732)
..+++++|.|... ..++.++. .|..-. .++...++.. +.+ ..++.|....- -...+..+++++.... .
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~-~gA~VtVVap~i~~el~~-l~~----~~~i~~~~r~~-~~~dl~g~~LViaATd--D 95 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLK-KGCYVYILSKKFSKEFLD-LKK----YGNLKLIKGNY-DKEFIKDKHLIVIATD--D 95 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCCCHHHHH-HHh----CCCEEEEeCCC-ChHHhCCCcEEEECCC--C
Confidence 4589999999643 33444443 221000 0011122222 221 13455554211 1234567887777664 3
Q ss_pred CCC-cHHHHHHHHcCCCEEEcCCCChhhhh-----ccCceEEEE-CCC-CCc-HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 636 ETF-GRVTIEAMAFGVPVLGTDAGGTKEIV-----EHNVTGLLH-PPG-HPG-AQVLAQNLRYLLKNPSVRERMAMEGRK 706 (732)
Q Consensus 636 Egf-g~vilEAMA~GlPVI~td~gG~~EiV-----e~g~~Gll~-~~~-d~~-~e~La~aL~~LL~n~~~r~~m~~~~r~ 706 (732)
+.. -.+.-+|.+.|.+|.+.+.....+++ ..+.--+-+ ..+ +|- +..+.+.|+.++.+-...-+.....|+
T Consensus 96 ~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~~l~~~l~~~R~ 175 (223)
T PRK05562 96 EKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYDDFIEYVTKIRN 175 (223)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34455666789999988765544443 333211112 222 220 034444555555443444444444555
Q ss_pred HHHH
Q 004760 707 KVER 710 (732)
Q Consensus 707 ~v~~ 710 (732)
.+.+
T Consensus 176 ~vk~ 179 (223)
T PRK05562 176 KAKK 179 (223)
T ss_pred HHHh
Confidence 5544
No 259
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=28.70 E-value=1.7e+02 Score=30.04 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=38.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEE--EEcCCCch--h---hh-----hcC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKV--LEDRGEPS--F---KT-----SMK 311 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v--~~~~~~~~--~---~~-----~~k 311 (732)
|.++|+.. +.-.=..+|++|++.|++|.++..........++...+.++ +..+.... + .. ..+
T Consensus 11 k~~lItG~-----~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 11 KVAVVTGC-----DTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CEEEEECC-----CchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45666543 33444578889999999988765322222234444444333 33332211 1 11 247
Q ss_pred ccEEEeCCc
Q 004760 312 ADLVIAGSA 320 (732)
Q Consensus 312 ~DlVia~Sa 320 (732)
+|++|.+..
T Consensus 86 ~D~li~~Ag 94 (253)
T PRK08993 86 IDILVNNAG 94 (253)
T ss_pred CCEEEECCC
Confidence 898876653
No 260
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=28.65 E-value=1.5e+02 Score=35.64 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCC--------CChhHHHhCCcEEEEcCCCch-----hhhhcCccEEEeC
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGEPS-----FKTSMKADLVIAG 318 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g--------~l~~el~~~gI~v~~~~~~~~-----~~~~~k~DlVia~ 318 (732)
|.+-...-..++|.+.||+|..|....+. ++.....+.||+++....... ..+..+||++++-
T Consensus 7 g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~ 82 (660)
T PRK08125 7 AYHDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSF 82 (660)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEc
Confidence 56666666668888899999965533221 123345678999986544321 3447899999653
No 261
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=28.49 E-value=2.5e+02 Score=32.53 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=50.3
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-CChhH----HHhCCcEEEEcCC--Cc------hhhh-
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPE----LARRKIKVLEDRG--EP------SFKT- 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-~l~~e----l~~~gI~v~~~~~--~~------~~~~- 308 (732)
.+|+.++. +...|-...+..||..|.+.|+.|.+|+..... +.... -+..+++++.... .+ .+..
T Consensus 100 ~~vi~lvG-~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 100 QNVIMFVG-LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 44555443 667778888999999999999999999854322 22222 3456788775432 21 1111
Q ss_pred -hcCccEEEeCCch
Q 004760 309 -SMKADLVIAGSAV 321 (732)
Q Consensus 309 -~~k~DlVia~Sav 321 (732)
...+|+|+..++-
T Consensus 179 ~~~~~DvViIDTaG 192 (429)
T TIGR01425 179 KKENFDIIIVDTSG 192 (429)
T ss_pred HhCCCCEEEEECCC
Confidence 3479999998753
No 262
>PRK06179 short chain dehydrogenase; Provisional
Probab=28.39 E-value=1.7e+02 Score=30.09 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=39.7
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--hhh--------h
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--FKT--------S 309 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--~~~--------~ 309 (732)
|+..+.++|+...+ -.-..+|++|++.|++|.++.-. .... . ...++.++..+.... +.. .
T Consensus 1 m~~~~~vlVtGasg-----~iG~~~a~~l~~~g~~V~~~~r~-~~~~-~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 1 MSNSKVALVTGASS-----GIGRATAEKLARAGYRVFGTSRN-PARA-A--PIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCCCCEEEEecCCC-----HHHHHHHHHHHHCCCEEEEEeCC-hhhc-c--ccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 34455667755332 23357788899999998877622 1111 1 123555554443221 111 2
Q ss_pred cCccEEEeCCch
Q 004760 310 MKADLVIAGSAV 321 (732)
Q Consensus 310 ~k~DlVia~Sav 321 (732)
..+|++|.+..+
T Consensus 72 g~~d~li~~ag~ 83 (270)
T PRK06179 72 GRIDVLVNNAGV 83 (270)
T ss_pred CCCCEEEECCCC
Confidence 368998777543
No 263
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.22 E-value=2e+02 Score=33.41 Aligned_cols=74 Identities=19% Similarity=0.109 Sum_probs=52.4
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-----ChhHHHhCCcEEEEcCCCch----------hhhhcCc
Q 004760 248 IFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-----LMPELARRKIKVLEDRGEPS----------FKTSMKA 312 (732)
Q Consensus 248 I~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-----l~~el~~~gI~v~~~~~~~~----------~~~~~k~ 312 (732)
+.-.|-..|-...+--||.+|.+.|+.|-+|+..-.-+ |..--+..+++++....... ..+...+
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~ 183 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGY 183 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCC
Confidence 33457788999999999999999999999999654322 22223578899988743322 1225568
Q ss_pred cEEEeCCch
Q 004760 313 DLVIAGSAV 321 (732)
Q Consensus 313 DlVia~Sav 321 (732)
|+||..||=
T Consensus 184 DvvIvDTAG 192 (451)
T COG0541 184 DVVIVDTAG 192 (451)
T ss_pred CEEEEeCCC
Confidence 999998753
No 264
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.14 E-value=1.6e+02 Score=34.19 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=48.9
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-hhHH---HhCCcEEEEcCCCch---h
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-MPEL---ARRKIKVLEDRGEPS---F 306 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l-~~el---~~~gI~v~~~~~~~~---~ 306 (732)
.++.+...++|+++.. |+ -....|++.|.+.|.+|..+........ ...+ ...+..++.+..... .
T Consensus 316 ~~~~~~l~Gk~vaI~~------~~-~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~d~~~~e~~~~ 388 (475)
T PRK14478 316 EPYRPRLEGKRVLLYT------GG-VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMIDDANPRELYKM 388 (475)
T ss_pred HHHHHHhCCCEEEEEc------CC-chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEeCCCHHHHHHH
Confidence 5667777899997742 22 4566888889999999998875443321 1122 223444444332222 3
Q ss_pred hhhcCccEEEeCC
Q 004760 307 KTSMKADLVIAGS 319 (732)
Q Consensus 307 ~~~~k~DlVia~S 319 (732)
....+||+++.++
T Consensus 389 i~~~~pDliig~s 401 (475)
T PRK14478 389 LKEAKADIMLSGG 401 (475)
T ss_pred HhhcCCCEEEecC
Confidence 3467899999986
No 265
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=27.83 E-value=4e+02 Score=29.37 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=50.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-----CChhHHHhCCcEEEEcCCC--ch------h--h
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----GLMPELARRKIKVLEDRGE--PS------F--K 307 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-----~l~~el~~~gI~v~~~~~~--~~------~--~ 307 (732)
..++.++. ....|-...+..||..+...|..|.++...... .+....++.+++++..... +. + .
T Consensus 114 ~~vi~lvG-pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 114 PFVILVVG-VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45665553 555677788899999999999999998854321 1233446778888765321 11 1 1
Q ss_pred hhcCccEEEeCCc
Q 004760 308 TSMKADLVIAGSA 320 (732)
Q Consensus 308 ~~~k~DlVia~Sa 320 (732)
...++|+|+..++
T Consensus 193 ~~~~~D~ViIDTa 205 (318)
T PRK10416 193 KARGIDVLIIDTA 205 (318)
T ss_pred HhCCCCEEEEeCC
Confidence 2567899988764
No 266
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.54 E-value=71 Score=34.73 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=40.1
Q ss_pred hccCCeEEEEeCCCCCCcHHHHHHHHHHHHHH--CCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCC---c--------h
Q 004760 239 FVWSRKFILIFHELSMTGAPLSMMELATELLS--CGATVSAVVLSKRGGLMPELARRKIKVLEDRGE---P--------S 305 (732)
Q Consensus 239 ~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~--~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~---~--------~ 305 (732)
...++||+++. |.+|... -.|.....+ .+++|.+|...+ .......++.||+++..+.. + .
T Consensus 86 ~~~~~ri~vl~---Sg~gsnl--~al~~~~~~~~~~~~i~~visn~-~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~ 159 (286)
T PRK06027 86 SAERKRVVILV---SKEDHCL--GDLLWRWRSGELPVEIAAVISNH-DDLRSLVERFGIPFHHVPVTKETKAEAEARLLE 159 (286)
T ss_pred cccCcEEEEEE---cCCCCCH--HHHHHHHHcCCCCcEEEEEEEcC-hhHHHHHHHhCCCEEEeccCccccchhHHHHHH
Confidence 44455665552 2334433 333333333 468888887444 34444466789999864321 1 1
Q ss_pred hhhhcCccEEEe
Q 004760 306 FKTSMKADLVIA 317 (732)
Q Consensus 306 ~~~~~k~DlVia 317 (732)
..++.+||+++.
T Consensus 160 ~l~~~~~Dlivl 171 (286)
T PRK06027 160 LIDEYQPDLVVL 171 (286)
T ss_pred HHHHhCCCEEEE
Confidence 344789999943
No 267
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.20 E-value=1.5e+02 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.092 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
-|+++|+.. +.-.=..+|++|++.|++|.++.
T Consensus 8 ~k~~lItGa-----s~gIG~aia~~l~~~G~~vv~~~ 39 (251)
T PRK12481 8 GKVAIITGC-----NTGLGQGMAIGLAKAGADIVGVG 39 (251)
T ss_pred CCEEEEeCC-----CchHHHHHHHHHHHCCCEEEEec
Confidence 355666543 33344578899999999987764
No 268
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=26.94 E-value=2.3e+02 Score=31.62 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=28.1
Q ss_pred EEEeCCCCCCcH--HHHHHHHHHHHHHCCCEEEEEE
Q 004760 246 ILIFHELSMTGA--PLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 246 llI~h~ls~gGA--~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
++++..++.||+ .=.+..||+.|.++|+.|.|++
T Consensus 58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 567788877765 4458899999999999999987
No 269
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=26.93 E-value=5.9e+02 Score=27.15 Aligned_cols=69 Identities=20% Similarity=0.150 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCC-Cch----hhhhcCccEEEeCCchhhHHHHHHH
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG-EPS----FKTSMKADLVIAGSAVCATWIDQYI 330 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~-~~~----~~~~~k~DlVia~Sav~~~~i~~~i 330 (732)
..---.||..|.+.|+.|.+-+....|. ....+++++.-+. ... |.++.++++||--|+-.+.-+...+
T Consensus 11 T~egr~la~~L~~~g~~v~~Svat~~g~----~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a 84 (248)
T PRK08057 11 TSEARALARALAAAGVDIVLSLAGRTGG----PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANA 84 (248)
T ss_pred hHHHHHHHHHHHhCCCeEEEEEccCCCC----cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHH
Confidence 3445678888888999888877666554 3345777776665 322 6678999999888766666665444
No 270
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=26.74 E-value=1.2e+02 Score=31.68 Aligned_cols=69 Identities=28% Similarity=0.275 Sum_probs=39.9
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
++++++| ||. .....=|+.|.++|.+|+|++..-...+..-....+|..+.......... .+++|++-+
T Consensus 12 ~k~Vlvv------GgG-~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~--~~~lviaAt 80 (210)
T COG1648 12 GKKVLVV------GGG-SVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLD--DAFLVIAAT 80 (210)
T ss_pred CCEEEEE------CCC-HHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhc--CceEEEEeC
Confidence 4677777 333 34445678889999999999955422233333455555555333332222 277776543
No 271
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=26.60 E-value=2e+02 Score=32.87 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=47.7
Q ss_pred hhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-CChhHH----HhCC--cEEEEcCCCch--
Q 004760 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPEL----ARRK--IKVLEDRGEPS-- 305 (732)
Q Consensus 235 ~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-~l~~el----~~~g--I~v~~~~~~~~-- 305 (732)
++.....++|++++. .+-.+..|++.|.+.|.++.++...... .+.+.+ ...+ +.++.......
T Consensus 293 d~~~~l~gkrv~v~g-------~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~ 365 (429)
T cd03466 293 DAHKYNFGRKAAIYG-------EPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIE 365 (429)
T ss_pred HHHHhcCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHH
Confidence 444455788987664 2678899999999999999666643322 223332 2222 33332222222
Q ss_pred -hhhhcCccEEEeCCc
Q 004760 306 -FKTSMKADLVIAGSA 320 (732)
Q Consensus 306 -~~~~~k~DlVia~Sa 320 (732)
+.++.+||+++.++.
T Consensus 366 ~~l~~~~~dliiG~s~ 381 (429)
T cd03466 366 SYAKELKIDVLIGNSY 381 (429)
T ss_pred HHHHhcCCCEEEECch
Confidence 445778999999874
No 272
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=26.33 E-value=1.4e+02 Score=36.93 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=42.8
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchhh
Q 004760 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCA 323 (732)
Q Consensus 252 ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~~ 323 (732)
+++||...+. ||+.|.+.|++|++.=. +......+|+..||.+..-. ..... ..+|+|+.+.++..
T Consensus 10 iG~G~sG~sa--lA~~L~~~G~~V~~sD~-~~~~~~~~L~~~gi~~~~g~-~~~~~--~~~d~vV~SpgI~~ 75 (809)
T PRK14573 10 IGIGGIGMSA--LAHILLDRGYSVSGSDL-SEGKTVEKLKAKGARFFLGH-QEEHV--PEDAVVVYSSSISK 75 (809)
T ss_pred EEecHHhHHH--HHHHHHHCCCeEEEECC-CCChHHHHHHHCCCEEeCCC-CHHHc--CCCCEEEECCCcCC
Confidence 4666655443 47779999999987542 22334567888899987543 22221 25899999887653
No 273
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=26.20 E-value=1.4e+02 Score=30.60 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=35.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
|++.|+..-+..|-....++||..|++.|+.|.+|=+...+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~ 43 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNL 43 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcch
Confidence 467777778888999999999999999999999998665543
No 274
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=26.20 E-value=1.7e+02 Score=30.64 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=38.9
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
+|+.|+..-+.-|-....++||.+|++.|+.|.++-+...+.+...+
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~ 48 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWK 48 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHH
Confidence 57788888888899999999999999999999999877666654443
No 275
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=25.80 E-value=2.6e+02 Score=31.11 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=41.5
Q ss_pred CCCcHHHH--HHHHHHHHHHCCCEEEEEEeCCCCCC-----------hhHHH-hCCcEEEEcCCCch-------------
Q 004760 253 SMTGAPLS--MMELATELLSCGATVSAVVLSKRGGL-----------MPELA-RRKIKVLEDRGEPS------------- 305 (732)
Q Consensus 253 s~gGA~~~--~~eLA~~L~~~G~~V~vv~l~~~g~l-----------~~el~-~~gI~v~~~~~~~~------------- 305 (732)
+..|+.+| +-.|.++|.+.||.|-|+......++ |+++. ..|+-+-..+..-.
T Consensus 58 G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~ 137 (323)
T COG1703 58 GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIK 137 (323)
T ss_pred CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHH
Confidence 44455444 55899999999999999987654321 44444 34444433332211
Q ss_pred hhhhcCccEEEeCC
Q 004760 306 FKTSMKADLVIAGS 319 (732)
Q Consensus 306 ~~~~~k~DlVia~S 319 (732)
+..+..+|+||.-+
T Consensus 138 ~ldAaG~DvIIVET 151 (323)
T COG1703 138 LLDAAGYDVIIVET 151 (323)
T ss_pred HHHhcCCCEEEEEe
Confidence 33378899997764
No 276
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=25.75 E-value=2e+02 Score=26.51 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=41.8
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCC
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG 302 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~ 302 (732)
+.+.-++++ .|.+|-...+++.++.++++|..+.+++ ..+++.+...+.++.++..+.
T Consensus 41 ~~~~dl~I~---iS~SG~t~e~i~~~~~a~~~g~~iI~IT--~~~~l~~~~~~~~~~~~~~p~ 98 (119)
T cd05017 41 VDRKTLVIA---VSYSGNTEETLSAVEQAKERGAKIVAIT--SGGKLLEMAREHGVPVIIIPK 98 (119)
T ss_pred CCCCCEEEE---EECCCCCHHHHHHHHHHHHCCCEEEEEe--CCchHHHHHHHcCCcEEECCC
Confidence 444556665 6778888888999999999999888888 345566655556777776554
No 277
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.73 E-value=2e+02 Score=30.49 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=56.9
Q ss_pred hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhc--C
Q 004760 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK--N 693 (732)
Q Consensus 616 dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~--n 693 (732)
.-..-++.||++|...-+ .|+|=-.+++.+ -+.+++....++..+. .....-++.++... ..++++|...|. |
T Consensus 45 ~d~~~l~~ADliv~~G~~-lE~~~~k~~~~~-~~~~v~~~~~~~~~~~-~~~dPH~Wldp~n~--~~~a~~I~~~L~~~d 119 (264)
T cd01020 45 TDAAKVSTADIVVYNGGG-YDPWMTKLLADT-KDVIVIAADLDGHDDK-EGDNPHLWYDPETM--SKVANALADALVKAD 119 (264)
T ss_pred HHHHHHhhCCEEEEeCCC-chHHHHHHHHhc-CCceEEeeecccccCC-CCCCCceecCHhHH--HHHHHHHHHHHHHhC
Confidence 344678899999988764 577766666655 4566666544432110 01133455666665 788888877765 7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004760 694 PSVRERMAMEGRKKVER 710 (732)
Q Consensus 694 ~~~r~~m~~~~r~~v~~ 710 (732)
|+..+...+++.+...+
T Consensus 120 P~~~~~y~~N~~~~~~~ 136 (264)
T cd01020 120 PDNKKYYQANAKKFVAS 136 (264)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 77777777777666554
No 278
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=25.68 E-value=2.4e+02 Score=28.79 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=39.5
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE--eCCCCCChhHHHhCCcEEEEc
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV--LSKRGGLMPELARRKIKVLED 300 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~--l~~~g~l~~el~~~gI~v~~~ 300 (732)
..+.||++|=+-+..||.-..+.+++ .+.|.+|..+. +.+..+-.+.++..||+++.+
T Consensus 120 ~~g~rVlIVDDVitTGgS~~~~i~~l---~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~sl 179 (187)
T PRK13810 120 KPEDRIVMLEDVTTSGGSVREAIEVV---REAGAYIKYVITVVDREEGAEENLKEADVELVPL 179 (187)
T ss_pred CCcCEEEEEEeccCCChHHHHHHHHH---HHCCCEEEEEEEEEECCcChHHHHHHcCCcEEEE
Confidence 45789998888888888766555555 55788875433 234444467788899988754
No 279
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=25.68 E-value=3.3e+02 Score=29.56 Aligned_cols=34 Identities=24% Similarity=0.120 Sum_probs=22.5
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
+++++| +|+...+ -.=..+|+.|.+.|++|.++.
T Consensus 2 ~~~k~i-lItGatG-----~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKV-LVTGHTG-----FKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEE-EEECCCC-----hhHHHHHHHHHHCCCEEEEEe
Confidence 344554 5543333 333678899999999998776
No 280
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=25.52 E-value=61 Score=32.44 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=30.7
Q ss_pred hHHHHHHH-cCEEEEccCCCCC----CCcHHHHHHHHcCCCEEEcCCC
Q 004760 616 RVASLYSA-ADVYVINSQGLGE----TFGRVTIEAMAFGVPVLGTDAG 658 (732)
Q Consensus 616 dv~~lysa-ADv~V~pS~~~~E----gfg~vilEAMA~GlPVI~td~g 658 (732)
.+..-+.. +|++|++-.+-.| ||--.+.+|++.|+|||++=..
T Consensus 85 ~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 85 ALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 34444444 9999998543233 5667889999999999997543
No 281
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=25.45 E-value=3.2e+02 Score=31.61 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=50.2
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-Ch----hHHHhCCcEEEEcCC--Cch------hhhh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LM----PELARRKIKVLEDRG--EPS------FKTS 309 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~----~el~~~gI~v~~~~~--~~~------~~~~ 309 (732)
..+++++ .+...|-...+..||..|.+.|+.|.+++.....+ .. ......+++++.... ... +...
T Consensus 95 p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 95 PQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 3455554 46677888888999999999999999998654322 11 122456888776532 111 2223
Q ss_pred cCccEEEeCCch
Q 004760 310 MKADLVIAGSAV 321 (732)
Q Consensus 310 ~k~DlVia~Sav 321 (732)
...|+||..++-
T Consensus 174 ~~~DvVIIDTAG 185 (437)
T PRK00771 174 KKADVIIVDTAG 185 (437)
T ss_pred hcCCEEEEECCC
Confidence 456999998763
No 282
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=25.38 E-value=1.9e+02 Score=31.04 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=46.7
Q ss_pred hhhhhcc--CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 235 DFARFVW--SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 235 ~~~~~~~--~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
+|..-.. .++++.|+.....-|-.....+||..|++.|..|-++=..-.|+-.+.+
T Consensus 47 ~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~ 104 (265)
T COG0489 47 KFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRM 104 (265)
T ss_pred hhhhccccccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHH
Confidence 4444443 7899999999999999999999999999999999999877777765554
No 283
>PRK12742 oxidoreductase; Provisional
Probab=25.18 E-value=2.3e+02 Score=28.33 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH-HhCCcEEEEcCCCc-h-----hhhhcCccEEEeCC
Q 004760 259 LSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEP-S-----FKTSMKADLVIAGS 319 (732)
Q Consensus 259 ~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el-~~~gI~v~~~~~~~-~-----~~~~~k~DlVia~S 319 (732)
-.=..+|+.|+++|++|.++...... -.+++ ...++.++..+... . +....++|++|.+.
T Consensus 17 gIG~~~a~~l~~~G~~v~~~~~~~~~-~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a 83 (237)
T PRK12742 17 GIGAAIVRRFVTDGANVRFTYAGSKD-AAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA 83 (237)
T ss_pred hHHHHHHHHHHHCCCEEEEecCCCHH-HHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence 33456888999999998765422211 12233 23355544333221 1 11223578887664
No 284
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=25.08 E-value=1.8e+02 Score=25.54 Aligned_cols=54 Identities=24% Similarity=0.194 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEE--EcCC---Cc---hhhhhcCccEEEeCC
Q 004760 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--EDRG---EP---SFKTSMKADLVIAGS 319 (732)
Q Consensus 261 ~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~--~~~~---~~---~~~~~~k~DlVia~S 319 (732)
++++|+.|.+.|+++.+-. | -...|++.|+++- ..+. .+ .+.+..++|+||...
T Consensus 2 ~~~~~~~l~~lG~~i~AT~----g-Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 2 LVELAKRLAELGFELVATG----G-TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHHHHHCCCEEEEcc----H-HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECC
Confidence 5689999999999986543 2 3466778898763 2111 11 144477999997764
No 285
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.98 E-value=2.6e+02 Score=31.67 Aligned_cols=62 Identities=21% Similarity=0.096 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCCEEEEEEeCCC--CCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchh
Q 004760 260 SMMELATELLSCGATVSAVVLSKR--GGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (732)
Q Consensus 260 ~~~eLA~~L~~~G~~V~vv~l~~~--g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~ 322 (732)
.=+..|+.|++.|++|.+.-.... .....++...|+++........+. ...+|+|+.+.++.
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~d~vV~s~gi~ 79 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELL-DEDFDLMVKNPGIP 79 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHh-cCcCCEEEECCCCC
Confidence 334458899999999888642211 123356777898887533322221 11489998887654
No 286
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=24.97 E-value=1.7e+02 Score=30.55 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=35.5
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM 287 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~ 287 (732)
.++|+++......||--.. .|++|...|++|.|+.+.+.....
T Consensus 49 ~~~v~vlcG~GnNGGDG~V---aAR~L~~~G~~V~v~~~~~~~~~~ 91 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLV---AARHLKAAGYAVTVLLLGDPKKLK 91 (203)
T ss_pred CCEEEEEECCCCccHHHHH---HHHHHHhCCCceEEEEeCCCCCcc
Confidence 5789999999999997765 588899999999999987666543
No 287
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=24.80 E-value=1.6e+02 Score=30.11 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=32.6
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
||+.|...-+.-|......+||.+|++.|+.|.+|=+...
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3566666667779999999999999999999999976553
No 288
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=24.74 E-value=1.8e+02 Score=26.02 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--hhh--hcCccEEEeCC
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--FKT--SMKADLVIAGS 319 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--~~~--~~k~DlVia~S 319 (732)
|.......+++.|.+.+.+|.++. .+.....++...|+.++.-..... +.+ -.++|.|++.+
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid--~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVID--RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEE--SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEE--CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 445678899999999776888887 344456778889999887665543 333 45788777664
No 289
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=24.56 E-value=2.8e+02 Score=30.79 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=48.9
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh----hHHHhCCcEEEEcCCCch---h
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM----PELARRKIKVLEDRGEPS---F 306 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~----~el~~~gI~v~~~~~~~~---~ 306 (732)
.++.+.+.+++++++. .+...+.++..|...|.+|..+.......-. ..+...+-.++....... .
T Consensus 271 ~~~~~~l~g~~~~i~~-------~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 343 (399)
T cd00316 271 ADYHEYLGGKKVAIFG-------DGDLLLALARFLLELGMEVVAAGTTFGHKADYERREELLGEGTEVVDDGDLEELEEL 343 (399)
T ss_pred HHHHHHhcCCEEEEEC-------CCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHHHH
Confidence 3455667789986642 1235666778889999998888754433221 123344545554443333 3
Q ss_pred hhhcCccEEEeCCc
Q 004760 307 KTSMKADLVIAGSA 320 (732)
Q Consensus 307 ~~~~k~DlVia~Sa 320 (732)
....+||+++.++.
T Consensus 344 ~~~~~pdl~ig~~~ 357 (399)
T cd00316 344 IRELKPDLIIGGSK 357 (399)
T ss_pred HhhcCCCEEEECCc
Confidence 34668999988874
No 290
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=24.50 E-value=1.3e+02 Score=28.95 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=32.1
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 245 FILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 245 IllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
|+.|+..-+.-|......+||..|+++|+.|.++=+...
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 355666677778899999999999999999999975543
No 291
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=24.35 E-value=88 Score=29.45 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=40.0
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-ChhHHHhCCcEEEEc-----CCCch--hhhhcCccE
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELARRKIKVLED-----RGEPS--FKTSMKADL 314 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~~el~~~gI~v~~~-----~~~~~--~~~~~k~Dl 314 (732)
|||++++. .+++-....++.+.|.+.|++|.++. ++.+. +.......+-++... ..... +.-...+|+
T Consensus 1 k~i~l~vt---Gs~~~~~~~~~l~~L~~~g~~v~vv~-S~~A~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~D~ 76 (129)
T PF02441_consen 1 KRILLGVT---GSIAAYKAPDLLRRLKRAGWEVRVVL-SPSAERFVTPEGLTGEPVYTDWDTWDRGDPAEHIELSRWADA 76 (129)
T ss_dssp -EEEEEE----SSGGGGGHHHHHHHHHTTTSEEEEEE-SHHHHHHSHHHGHCCSCEECTHCTCSTTTTTCHHHHHHTESE
T ss_pred CEEEEEEE---CHHHHHHHHHHHHHHhhCCCEEEEEE-CCcHHHHhhhhccccchhhhccccCCCCCCcCcccccccCCE
Confidence 46666642 23444448999999999999999998 44332 111111234455544 11111 222556888
Q ss_pred EEeC
Q 004760 315 VIAG 318 (732)
Q Consensus 315 Via~ 318 (732)
++.-
T Consensus 77 ~vVa 80 (129)
T PF02441_consen 77 MVVA 80 (129)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8654
No 292
>CHL00175 minD septum-site determining protein; Validated
Probab=24.15 E-value=1.5e+02 Score=31.27 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=35.7
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
.+++.|+..-+.-|......+||..|+++|+.|.+|=+...
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~ 55 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG 55 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 47888888888889999999999999999999999875543
No 293
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.08 E-value=37 Score=31.51 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhheee
Q 004760 67 RLVYWLLLITLWTYLGFYV 85 (732)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~ 85 (732)
-.++|+||+.-|+..+.|+
T Consensus 83 ~~LPW~LL~lSW~gF~~Y~ 101 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGFIAYI 101 (103)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 4689999999998766654
No 294
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=24.05 E-value=1.5e+02 Score=28.72 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=32.9
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh
Q 004760 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM 287 (732)
Q Consensus 247 lI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~ 287 (732)
.|.+.-+..|-......||..|++.|+.|.++-+...++..
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~ 42 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNL 42 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHH
T ss_pred EEEcCCCCccHHHHHHHHHhccccccccccccccCcccccH
Confidence 45666677899999999999999999999999976666543
No 295
>PRK06194 hypothetical protein; Provisional
Probab=23.93 E-value=2.5e+02 Score=29.26 Aligned_cols=22 Identities=9% Similarity=-0.136 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 004760 258 PLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
.-.=..+|++|+++|++|.++.
T Consensus 16 ggIG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 16 SGFGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred cHHHHHHHHHHHHCCCEEEEEe
Confidence 3344568889999999987765
No 296
>PRK05920 aromatic acid decarboxylase; Validated
Probab=23.91 E-value=1.2e+02 Score=31.49 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=27.8
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
+.+||++.. +.+.|-.-..++++.|.+.|++|.++.
T Consensus 2 ~~krIllgI---TGsiaa~ka~~lvr~L~~~g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAI---TGASGAIYGVRLLECLLAADYEVHLVI 37 (204)
T ss_pred CCCEEEEEE---eCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 457777663 334455788899999999999999998
No 297
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=23.75 E-value=1.1e+02 Score=30.72 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=30.8
Q ss_pred chhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC
Q 004760 613 ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (732)
Q Consensus 613 ~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td 656 (732)
...++..+++.||++|..... ..+=|+++|+|+|+-+
T Consensus 247 ~~~~~~~~~~~~~~~Is~RlH-------~~I~a~~~g~P~i~i~ 283 (286)
T PF04230_consen 247 SPDELLELISQADLVISMRLH-------GAILALSLGVPVIAIS 283 (286)
T ss_pred CHHHHHHHHhcCCEEEecCCH-------HHHHHHHcCCCEEEEe
Confidence 448999999999999987752 4677999999999854
No 298
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=23.57 E-value=2.9e+02 Score=31.35 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=47.4
Q ss_pred hhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeC--CCCCChhHHHhCC-cEEEEcC-CCch---hh
Q 004760 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELL-SCGATVSAVVLS--KRGGLMPELARRK-IKVLEDR-GEPS---FK 307 (732)
Q Consensus 236 ~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~-~~G~~V~vv~l~--~~g~l~~el~~~g-I~v~~~~-~~~~---~~ 307 (732)
+...+.+|||.+... . -.+..|++.|. +.|.+|..++.. ....+...++... ..++... .... ..
T Consensus 282 ~~~~l~Gk~vai~~~------~-~~~~~la~~l~~elG~~v~~i~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~e~~~~~ 354 (415)
T cd01977 282 YKERLKGKKVCIWTG------G-PKLWHWTKVIEDELGMQVVAMSSKFGHQEDFEKVIARGGEGTIYIDDPNELEFFEIL 354 (415)
T ss_pred HHHHcCCCEEEEECC------C-chHHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHhcCCceEEEeCCCHHHHHHHH
Confidence 445677899987532 2 23688999996 799999887632 2222334444433 3444432 2222 23
Q ss_pred hhcCccEEEeCCc
Q 004760 308 TSMKADLVIAGSA 320 (732)
Q Consensus 308 ~~~k~DlVia~Sa 320 (732)
.+.+||+++.|+.
T Consensus 355 ~~~~pdliig~s~ 367 (415)
T cd01977 355 EMLKPDIILTGPR 367 (415)
T ss_pred HhcCCCEEEecCc
Confidence 5779999988873
No 299
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=23.46 E-value=2e+02 Score=26.01 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=39.4
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
.++++++| |+......=++.|.+.|++|+|++..- +.....++....... . .-..+|+|++.+
T Consensus 6 ~~~~vlVv-------GgG~va~~k~~~Ll~~gA~v~vis~~~------~~~~~~i~~~~~~~~-~--~l~~~~lV~~at 68 (103)
T PF13241_consen 6 KGKRVLVV-------GGGPVAARKARLLLEAGAKVTVISPEI------EFSEGLIQLIRREFE-E--DLDGADLVFAAT 68 (103)
T ss_dssp TT-EEEEE-------EESHHHHHHHHHHCCCTBEEEEEESSE------HHHHTSCEEEESS-G-G--GCTTESEEEE-S
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHhCCCEEEEECCch------hhhhhHHHHHhhhHH-H--HHhhheEEEecC
Confidence 46788887 334455577788999999999998332 233366776655442 1 133578887765
No 300
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=23.33 E-value=3e+02 Score=26.98 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=26.5
Q ss_pred hHHHHHHHcCEEEEccCCCCCCCc--HHHH---HHHHcCCCEEEcCCCC
Q 004760 616 RVASLYSAADVYVINSQGLGETFG--RVTI---EAMAFGVPVLGTDAGG 659 (732)
Q Consensus 616 dv~~lysaADv~V~pS~~~~Egfg--~vil---EAMA~GlPVI~td~gG 659 (732)
....++..||++|.-- +|-+- ++.+ =|.|+|+|.|.-....
T Consensus 65 RT~~li~~aDvVVvrF---GekYKQWNaAfDAg~a~AlgKplI~lh~~~ 110 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRF---GEKYKQWNAAFDAGYAAALGKPLITLHPEE 110 (141)
T ss_pred HHHHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeEEecchh
Confidence 3567899999988643 44321 2333 3568899999865543
No 301
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=23.25 E-value=1.3e+02 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=26.3
Q ss_pred cCCeEEEEeCCCCCCcHHHH-HHHHHHHHHHCCCEEEEEE
Q 004760 241 WSRKFILIFHELSMTGAPLS-MMELATELLSCGATVSAVV 279 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~-~~eLA~~L~~~G~~V~vv~ 279 (732)
.++||++.. +.+.|-.- ..++++.|.+.|++|.++.
T Consensus 4 ~~k~IllgV---TGsiaa~k~a~~lir~L~k~G~~V~vv~ 40 (196)
T PRK08305 4 KGKRIGFGL---TGSHCTYDEVMPEIEKLVDEGAEVTPIV 40 (196)
T ss_pred CCCEEEEEE---cCHHHHHHHHHHHHHHHHhCcCEEEEEE
Confidence 467777653 22334444 6899999999999999887
No 302
>PRK09072 short chain dehydrogenase; Provisional
Probab=23.14 E-value=2.8e+02 Score=28.51 Aligned_cols=24 Identities=25% Similarity=0.105 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 256 GAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
|+.-.-.++|+.|++.|++|.+++
T Consensus 13 ~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 13 ASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEE
Confidence 334445788899999999988887
No 303
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.10 E-value=2.5e+02 Score=29.28 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=42.7
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE--eCCCCCChhHHHhCCcEEEEcCCCch
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV--LSKRGGLMPELARRKIKVLEDRGEPS 305 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~--l~~~g~l~~el~~~gI~v~~~~~~~~ 305 (732)
.++||++|=+-...|| ++++-+..|.+.|.+|.-+. +.+..+..+.+...|++++.+-....
T Consensus 111 ~G~kVvvVEDViTTG~---Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~g~~~~sl~tl~d 174 (201)
T COG0461 111 KGEKVVVVEDVITTGG---SILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEYGVKLVSLVTLSD 174 (201)
T ss_pred CCCEEEEEEecccCCH---hHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhcCCceEEEeeHHH
Confidence 7888888766666665 46677777888999995443 34444456677889998887655444
No 304
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=23.04 E-value=1.8e+02 Score=31.52 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=31.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC
Q 004760 245 FILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL 286 (732)
Q Consensus 245 IllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l 286 (732)
|+.|..+-+..|-....++||.+|+..|+.|-++=+.-.|+-
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S 43 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPS 43 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 677888888888999999999999999999999987776753
No 305
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=22.89 E-value=2.1e+02 Score=29.44 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCC--CEEEEEEeCC-CCCChhHHHhCCcEEEEcC--CC-------ch---hhhhcCccEEE
Q 004760 260 SMMELATELLSCG--ATVSAVVLSK-RGGLMPELARRKIKVLEDR--GE-------PS---FKTSMKADLVI 316 (732)
Q Consensus 260 ~~~eLA~~L~~~G--~~V~vv~l~~-~g~l~~el~~~gI~v~~~~--~~-------~~---~~~~~k~DlVi 316 (732)
.+..+...+.+.+ ++|.+++..+ .........+.||+++... .. .. ..+..+||+++
T Consensus 14 ~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv 85 (200)
T PRK05647 14 NLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVV 85 (200)
T ss_pred hHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEE
Confidence 3445666666653 6777655443 2334455678899997633 11 11 33478999993
No 306
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.70 E-value=6.7e+02 Score=25.30 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=57.3
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeCCCCCC-hhHHHhCCcEEEEcCCCch-----hhhhcCccEEEe
Q 004760 246 ILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGGL-MPELARRKIKVLEDRGEPS-----FKTSMKADLVIA 317 (732)
Q Consensus 246 llI~h~ls~gGA~~~~~eLA~~L~~~--G~~V~vv~l~~~g~l-~~el~~~gI~v~~~~~~~~-----~~~~~k~DlVia 317 (732)
++-+|..| -|--.++..|+++|.++ |+.|.+-+.+..|.- ....-..++.+...+.+.. |....+||+++.
T Consensus 23 ~iWiHa~S-vGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~ 101 (186)
T PF04413_consen 23 LIWIHAAS-VGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIW 101 (186)
T ss_dssp -EEEE-SS-HHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEE
T ss_pred cEEEEECC-HHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEE
Confidence 44477666 46677889999999987 787777775444421 1111122555655665543 555789999965
Q ss_pred CCchhhHHHHHHH-HhhcCCCccEEEE--Eee---chhHhH-HHhhhhhccccEEEEecHHhHHH
Q 004760 318 GSAVCATWIDQYI-TRFPAGGSQVVWW--IME---NRREYF-DRAKLVLDRVKLLVFLSESQTKQ 375 (732)
Q Consensus 318 ~Sav~~~~i~~~i-~~~~~~~~~ivw~--i~e---~r~~~~-~~~~~~l~r~~~li~vS~~~~~~ 375 (732)
-- ....+.++ .....+.+.+.-- +-. .+...+ ...+..+..++.+...++.+.+.
T Consensus 102 ~E---tElWPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r 163 (186)
T PF04413_consen 102 VE---TELWPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAER 163 (186)
T ss_dssp ES-------HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHH
T ss_pred Ec---cccCHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHH
Confidence 43 22233334 3333344422111 100 011112 23456677799999999997654
No 307
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=22.61 E-value=1.9e+02 Score=29.24 Aligned_cols=21 Identities=29% Similarity=0.135 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 004760 259 LSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 259 ~~~~eLA~~L~~~G~~V~vv~ 279 (732)
-.-..+|++|.++|++|.++.
T Consensus 15 ~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 15 GIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred hHHHHHHHHHHHCCCeEEEEe
Confidence 334688999999999988776
No 308
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.52 E-value=2e+02 Score=32.84 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=42.1
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCch
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav 321 (732)
.+||+++ +.||...+ +|..|.+.|++|.+.- ........++..|+.+..... . .-.++|+|+...++
T Consensus 9 ~~~i~vi----G~G~~G~~---~a~~l~~~G~~v~~~D--~~~~~~~~l~~~g~~~~~~~~--~--~~~~~d~vv~sp~i 75 (460)
T PRK01390 9 GKTVAVF----GLGGSGLA---TARALVAGGAEVIAWD--DNPASRAKAAAAGITTADLRT--A--DWSGFAALVLSPGV 75 (460)
T ss_pred CCEEEEE----eecHhHHH---HHHHHHHCCCEEEEEC--CChhhHHHHHhcCccccCCCh--h--HHcCCCEEEECCCC
Confidence 4566554 57776665 4888999999987754 222222346677887543211 1 11368999988766
Q ss_pred h
Q 004760 322 C 322 (732)
Q Consensus 322 ~ 322 (732)
.
T Consensus 76 ~ 76 (460)
T PRK01390 76 P 76 (460)
T ss_pred C
Confidence 5
No 309
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.52 E-value=2.2e+02 Score=30.25 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=32.3
Q ss_pred cEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC
Q 004760 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~ 657 (732)
.+.......++..+++.||++|.... -.++=|+.+|+|+++-..
T Consensus 234 ~i~~~~~~~e~~~~i~~~~~vI~~Rl-------H~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 234 EVLSPLDPEELLGLFASARLVIGMRL-------HALILAAAAGVPFVALSY 277 (298)
T ss_pred EEEecCCHHHHHHHHhhCCEEEEech-------HHHHHHHHcCCCEEEeec
Confidence 44323345788899999998886654 257779999999997643
No 310
>PRK06849 hypothetical protein; Provisional
Probab=22.50 E-value=3.4e+02 Score=30.22 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVL 280 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l 280 (732)
+++||++ ||..-..+.+|+.|.+.|++|.++..
T Consensus 4 ~~~VLI~------G~~~~~~l~iar~l~~~G~~Vi~~d~ 36 (389)
T PRK06849 4 KKTVLIT------GARAPAALELARLFHNAGHTVILADS 36 (389)
T ss_pred CCEEEEe------CCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4566555 33333689999999999999999973
No 311
>PRK07890 short chain dehydrogenase; Provisional
Probab=22.47 E-value=1.8e+02 Score=29.64 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=22.1
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
+.+++ ++|+. |+.-.-..+|+.|+++|++|.++.
T Consensus 3 l~~k~-vlItG-----a~~~IG~~la~~l~~~G~~V~~~~ 36 (258)
T PRK07890 3 LKGKV-VVVSG-----VGPGLGRTLAVRAARAGADVVLAA 36 (258)
T ss_pred cCCCE-EEEEC-----CCCcHHHHHHHHHHHcCCEEEEEe
Confidence 44444 55543 333444578889999999887775
No 312
>PRK06128 oxidoreductase; Provisional
Probab=22.42 E-value=3.5e+02 Score=28.73 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCEEEEEEe
Q 004760 262 MELATELLSCGATVSAVVL 280 (732)
Q Consensus 262 ~eLA~~L~~~G~~V~vv~l 280 (732)
..+|+.|++.|++|.++..
T Consensus 69 ~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 69 RATAIAFAREGADIALNYL 87 (300)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 4688899999999977654
No 313
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=22.27 E-value=3.1e+02 Score=32.45 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=52.6
Q ss_pred cccccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-CChhHH----Hh--C--CcEEEE
Q 004760 229 TCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPEL----AR--R--KIKVLE 299 (732)
Q Consensus 229 ~~~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-~l~~el----~~--~--gI~v~~ 299 (732)
.-|.=.|+...+.+||+.+. |-|-.++.+++-|.+.|.++..++..... .+.+++ .. . +..|+.
T Consensus 350 l~dam~d~~~~l~GKrvaI~-------gdpd~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~ 422 (515)
T TIGR01286 350 LVDAMTDSHAWLHGKRFAIY-------GDPDFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWI 422 (515)
T ss_pred HHHHHHHHHHHhcCceEEEE-------CCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEe
Confidence 34444455566788999876 46778999999999999998766644322 233332 21 1 234443
Q ss_pred cCCCch---hhhhcCccEEEeCCc
Q 004760 300 DRGEPS---FKTSMKADLVIAGSA 320 (732)
Q Consensus 300 ~~~~~~---~~~~~k~DlVia~Sa 320 (732)
...... +....+||++|.||.
T Consensus 423 ~~Dl~~l~~~l~~~~~DlliG~s~ 446 (515)
T TIGR01286 423 GKDLWHLRSLVFTEPVDFLIGNSY 446 (515)
T ss_pred CCCHHHHHHHHhhcCCCEEEECch
Confidence 322111 334679999999874
No 314
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.23 E-value=2.5e+02 Score=32.43 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=43.3
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCc
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSA 320 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sa 320 (732)
.++||++ ++.||+.+ -+|..|.+.|++|.+.- .........++..||+++......... .++|+||...+
T Consensus 14 ~~~~v~v----~G~G~sG~---a~a~~L~~~G~~V~~~D-~~~~~~~~~l~~~gi~~~~~~~~~~~~--~~~d~vV~Spg 83 (473)
T PRK00141 14 LSGRVLV----AGAGVSGR---GIAAMLSELGCDVVVAD-DNETARHKLIEVTGVADISTAEASDQL--DSFSLVVTSPG 83 (473)
T ss_pred cCCeEEE----EccCHHHH---HHHHHHHHCCCEEEEEC-CChHHHHHHHHhcCcEEEeCCCchhHh--cCCCEEEeCCC
Confidence 3456654 46777665 66777889999776654 111122222456699887643222212 26899999887
Q ss_pred hh
Q 004760 321 VC 322 (732)
Q Consensus 321 v~ 322 (732)
+.
T Consensus 84 i~ 85 (473)
T PRK00141 84 WR 85 (473)
T ss_pred CC
Confidence 75
No 315
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=22.22 E-value=3e+02 Score=27.46 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=37.7
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE--eCCCCCChhHHHhCCcEEEEc
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV--LSKRGGLMPELARRKIKVLED 300 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~--l~~~g~l~~el~~~gI~v~~~ 300 (732)
+.++++++|=+-++.||.-..+. +.|.+.|.+|.-+. +.+..+..+.++..|++++.+
T Consensus 102 ~~g~~VlIVDDvi~TG~T~~~~~---~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~sl 161 (170)
T PRK13811 102 VKGKRVLLVEDVTTSGGSALYGI---EQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTPL 161 (170)
T ss_pred cCCCEEEEEEecccccHHHHHHH---HHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEEEE
Confidence 35788888877777777655444 45556788875332 234334456677789988754
No 316
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=22.17 E-value=2e+02 Score=29.30 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhh-----hcCccEEEeCCchh
Q 004760 259 LSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKT-----SMKADLVIAGSAVC 322 (732)
Q Consensus 259 ~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~-----~~k~DlVia~Sav~ 322 (732)
+.-..||.++..+|++|++|.-.. .+. ...+++++.......+.. .-+.|++|...|++
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~g~~--~~~---~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIHGPS--SLP---PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVS 93 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-TT--S-------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--
T ss_pred HHHHHHHHHHHHCCCEEEEEecCc--ccc---ccccceEEEecchhhhhhhhccccCcceeEEEecchh
Confidence 455689999999999999998321 111 145888887666554322 23469987766654
No 317
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=22.08 E-value=1.7e+02 Score=28.47 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=32.9
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 246 llI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
+.++..-+..|-.....+||..|++.|+.|.+|-+...++
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~ 41 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGP 41 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 4566666777899999999999999999999998665554
No 318
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.98 E-value=1.6e+02 Score=30.04 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHCCC--EEEEEEeCCC-CCChhHHHhCCcEEEEcC--CC-------ch---hhhhcCccEEEe
Q 004760 258 PLSMMELATELLSCGA--TVSAVVLSKR-GGLMPELARRKIKVLEDR--GE-------PS---FKTSMKADLVIA 317 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~--~V~vv~l~~~-g~l~~el~~~gI~v~~~~--~~-------~~---~~~~~k~DlVia 317 (732)
...+..+...+.+.+. +|.+|+..+. ........+.||+++... .. .. +.+..+||++++
T Consensus 11 gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~ 85 (190)
T TIGR00639 11 GSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVL 85 (190)
T ss_pred ChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEE
Confidence 3445567777776554 6666654543 333455678899987522 11 11 344779999954
No 319
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.88 E-value=2e+02 Score=29.08 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=35.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRG 284 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~-~G~~V~vv~l~~~g 284 (732)
.|++.|+..-+..|......+||.+|++ .|+.|.+|-+...+
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 5688888888888999999999999996 69999999755443
No 320
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.84 E-value=3.1e+02 Score=27.58 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
+.++|+...+. .-..+|+.|++.|++|.++.
T Consensus 6 ~~vlItGasg~-----iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSG-----IGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred cEEEEECCCCh-----HHHHHHHHHHHCCCEEEEEe
Confidence 34555433333 33578889999999977775
No 321
>PRK07060 short chain dehydrogenase; Provisional
Probab=21.46 E-value=3.5e+02 Score=27.16 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH-hCCcEEEEcCCC-ch-h----hhhcCccEEEeCCc
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGE-PS-F----KTSMKADLVIAGSA 320 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~-~~gI~v~~~~~~-~~-~----~~~~k~DlVia~Sa 320 (732)
.-.-..+|+.|++.|++|.++. +...-.+++. ..+..++..+.. .. + ....++|+||.+..
T Consensus 19 g~iG~~~a~~l~~~g~~V~~~~--r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag 86 (245)
T PRK07060 19 SGIGRACAVALAQRGARVVAAA--RNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG 86 (245)
T ss_pred chHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence 3445567888889999977765 3222222332 224444433222 11 2 22235788877653
No 322
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.12 E-value=6.7e+02 Score=26.73 Aligned_cols=74 Identities=24% Similarity=0.204 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCC-Cch----hhhhcCccEEEeCCchhhHHHHHHH
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG-EPS----FKTSMKADLVIAGSAVCATWIDQYI 330 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~-~~~----~~~~~k~DlVia~Sav~~~~i~~~i 330 (732)
|...---+||..|.+.|+ |.+-+....|+....-...+..++.-+. ... +.+..++++||--|+-.+.-+.+.+
T Consensus 7 gGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na 85 (249)
T PF02571_consen 7 GGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNA 85 (249)
T ss_pred echHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHH
Confidence 344456789999999998 6655555555422211123567766665 332 6678899999888776666666544
No 323
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=20.95 E-value=1.4e+02 Score=35.17 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=49.3
Q ss_pred hhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeCC--CCCChhHHHhC--CcEEEEcCCCch---hh
Q 004760 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELL-SCGATVSAVVLSK--RGGLMPELARR--KIKVLEDRGEPS---FK 307 (732)
Q Consensus 236 ~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~-~~G~~V~vv~l~~--~g~l~~el~~~--gI~v~~~~~~~~---~~ 307 (732)
+...+.+||+++... +-.+..++..|. +.|.+|.+++... .+.+...++.. +.-++.+..... ..
T Consensus 322 ~~~~L~GKrvai~~g-------g~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~D~~~~e~~~~l 394 (513)
T TIGR01861 322 YKERLKGKKVCLWPG-------GSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAIDDPNELEGLEAM 394 (513)
T ss_pred HHHhcCCCEEEEECC-------chHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEecCCCHHHHHHHH
Confidence 657778999988733 347778888888 5999998776433 12233333333 333333333333 34
Q ss_pred hhcCccEEEeCCc
Q 004760 308 TSMKADLVIAGSA 320 (732)
Q Consensus 308 ~~~k~DlVia~Sa 320 (732)
...+||+++.|+.
T Consensus 395 ~~~~~Dllig~s~ 407 (513)
T TIGR01861 395 EMLKPDIILTGKR 407 (513)
T ss_pred HhcCCCEEEecCc
Confidence 6789999999874
No 324
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=20.73 E-value=1.6e+02 Score=34.55 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCCCCcH-HHHHHHHHHHHHHCCCEEEEEEeC
Q 004760 242 SRKFILIFHELSMTGA-PLSMMELATELLSCGATVSAVVLS 281 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA-~~~~~eLA~~L~~~G~~V~vv~l~ 281 (732)
+-||+.++.. .++. -..+-.+|++|+++||+|++++..
T Consensus 20 ~~kIl~~~P~--~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 20 AARILAVFPT--PAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred cccEEEEcCC--CCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3457777654 3444 345678999999999999999753
No 325
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=20.63 E-value=2.3e+02 Score=31.81 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=29.5
Q ss_pred CeEEEEeCCCCCCcH--HHHHHHHHHHHHHCCCEEEEEE
Q 004760 243 RKFILIFHELSMTGA--PLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 243 ~kIllI~h~ls~gGA--~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
+.=++++..++.||+ .=.++.||+.|++.|..|.+++
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS 84 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS 84 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEe
Confidence 344667777877765 4568999999999999999998
No 326
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=20.62 E-value=3.4e+02 Score=27.31 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=38.4
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE-e-CCCCCChhHHHhCCcEEEEcC
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV-L-SKRGGLMPELARRKIKVLEDR 301 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~-l-~~~g~l~~el~~~gI~v~~~~ 301 (732)
..+++|++|=+-++.||. +..++..|.+.|++|.-++ + .+..+-.+.++..|++++.+-
T Consensus 105 ~~g~~VlIVDDvitTG~T---l~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~sL~ 165 (176)
T PRK13812 105 DEGEEVVVLEDIATTGQS---AVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEALV 165 (176)
T ss_pred CCcCEEEEEEEeeCCCHH---HHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEEEE
Confidence 367888888777777765 4455566677898864433 2 333344567778899887653
No 327
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=20.61 E-value=1.4e+02 Score=30.53 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=48.0
Q ss_pred cccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChh
Q 004760 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP 288 (732)
Q Consensus 231 ~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~ 288 (732)
+..|+|++.-. --|+.|..+++.-=.+.-+.+++.+|++.|..++++.|....+..+
T Consensus 22 AQRGT~ae~~~-~eV~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lvLnaG~GvP~ 78 (194)
T TIGR03264 22 AQRGTFAECGR-NDVVAVAMSPGRRHITKPVCEITYALREAGIQTSVLVLNAGSGIPP 78 (194)
T ss_pred ccceehhhccC-CCEEEEecCcccccCCCcHHHHHHHHHHcCCccceEEEecCCCCCC
Confidence 44688888755 6788999999999999999999999999999999999887655433
No 328
>PRK10037 cell division protein; Provisional
Probab=20.51 E-value=1.7e+02 Score=30.49 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=34.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g 284 (732)
||+-|...-+.-|-.....+||..|++.|+.|.+|=+...+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence 37777777778899999999999999999999999755443
No 329
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=20.46 E-value=2.2e+02 Score=30.32 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=30.2
Q ss_pred ccCCeEEEEeCCCCCCc--HHHHHHHHHHHHHHCCCEEEEEEe
Q 004760 240 VWSRKFILIFHELSMTG--APLSMMELATELLSCGATVSAVVL 280 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gG--A~~~~~eLA~~L~~~G~~V~vv~l 280 (732)
||+++|.+++..-|..- ...+...+.++|.+.||+|.++..
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~ 44 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDP 44 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEec
Confidence 57789999984433321 234568899999999999999863
No 330
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.35 E-value=1.9e+02 Score=27.32 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.9
Q ss_pred eEEEEeCCCCCCcHHHHHHH-HHHHHHHCCCEEEEEEeCCC
Q 004760 244 KFILIFHELSMTGAPLSMME-LATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~e-LA~~L~~~G~~V~vv~l~~~ 283 (732)
||++|..+...+|-...+.+ ++..|.+.|+++.++-+...
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 89999999987776666554 55666667999999987654
No 331
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.33 E-value=2e+02 Score=26.27 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=35.1
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChh
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP 288 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~ 288 (732)
+.+.-+++++ |..|....+++.++.++++|..|.+++-....++.+
T Consensus 45 ~~~~d~vi~i---S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 45 VTPGDVVIAI---SNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred CCCCCEEEEE---eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 3455566664 788899999999999999999999999545555443
No 332
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.27 E-value=1.3e+02 Score=28.17 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=32.8
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhh
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEI 663 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~Ei 663 (732)
+++.+++..+|++|--|. .+..--.+-.|+.+|+|+|..-.|-..|-
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHH
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 678899999999998775 66666666778899999999777765443
No 333
>PRK07577 short chain dehydrogenase; Provisional
Probab=20.17 E-value=4.2e+02 Score=26.40 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=18.8
Q ss_pred CcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 255 TGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 255 gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
||..-.-..+|++|++.|++|.++.
T Consensus 10 G~s~~iG~~ia~~l~~~G~~v~~~~ 34 (234)
T PRK07577 10 GATKGIGLALSLRLANLGHQVIGIA 34 (234)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 4444555678899999999988876
Done!