Query 004760
Match_columns 732
No_of_seqs 248 out of 3153
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 2.1E-37 7.3E-42 328.2 35.5 351 240-731 2-382 (394)
2 2x6q_A Trehalose-synthase TRET 100.0 9.3E-37 3.2E-41 329.1 31.2 383 208-729 6-415 (416)
3 3fro_A GLGA glycogen synthase; 100.0 1E-36 3.5E-41 326.9 30.8 357 241-731 1-433 (439)
4 2jjm_A Glycosyl transferase, g 100.0 7E-36 2.4E-40 320.0 35.6 349 241-731 14-388 (394)
5 3c48_A Predicted glycosyltrans 100.0 1.3E-35 4.3E-40 321.3 37.0 354 243-731 21-428 (438)
6 2r60_A Glycosyl transferase, g 100.0 2.5E-35 8.5E-40 326.7 31.7 370 243-731 8-462 (499)
7 2iw1_A Lipopolysaccharide core 100.0 9.8E-35 3.3E-39 306.2 25.0 343 244-730 2-373 (374)
8 1rzu_A Glycogen synthase 1; gl 100.0 3E-34 1E-38 316.0 28.5 359 244-731 2-478 (485)
9 3oy2_A Glycosyltransferase B73 100.0 6.5E-34 2.2E-38 306.1 27.0 347 244-731 2-393 (413)
10 2qzs_A Glycogen synthase; glyc 100.0 1.3E-33 4.5E-38 310.9 28.5 359 244-730 2-478 (485)
11 2gek_A Phosphatidylinositol ma 100.0 1.1E-32 3.8E-37 293.8 26.3 340 242-731 20-386 (406)
12 2iuy_A Avigt4, glycosyltransfe 100.0 3.6E-32 1.2E-36 285.7 23.8 308 240-731 1-338 (342)
13 3vue_A GBSS-I, granule-bound s 100.0 4.2E-31 1.4E-35 300.5 26.3 211 404-729 274-512 (536)
14 3s28_A Sucrose synthase 1; gly 100.0 2.4E-30 8.1E-35 306.8 26.2 421 205-728 237-769 (816)
15 2x0d_A WSAF; GT4 family, trans 100.0 3E-28 1E-32 268.0 17.4 332 243-730 47-411 (413)
16 2vsy_A XCC0866; transferase, g 100.0 4.3E-28 1.5E-32 272.6 16.9 328 242-730 205-561 (568)
17 1f0k_A MURG, UDP-N-acetylgluco 99.9 1.4E-26 4.7E-31 244.5 25.0 318 243-729 7-358 (364)
18 2bfw_A GLGA glycogen synthase; 99.9 1.2E-25 4.2E-30 218.4 19.0 189 407-713 1-200 (200)
19 3nb0_A Glycogen [starch] synth 99.9 1.1E-25 3.9E-30 259.3 19.4 384 310-730 180-635 (725)
20 1vgv_A UDP-N-acetylglucosamine 99.9 1.3E-24 4.5E-29 231.0 16.7 342 243-730 1-378 (384)
21 3beo_A UDP-N-acetylglucosamine 99.9 2.9E-24 9.9E-29 227.2 14.2 333 243-726 9-374 (375)
22 1uqt_A Alpha, alpha-trehalose- 99.9 1.7E-22 5.9E-27 227.2 27.2 307 311-728 123-454 (482)
23 3qhp_A Type 1 capsular polysac 99.9 4.7E-23 1.6E-27 194.8 16.1 130 560-720 33-166 (166)
24 2hy7_A Glucuronosyltransferase 99.9 2E-22 7E-27 220.1 18.1 107 603-729 262-380 (406)
25 2xci_A KDO-transferase, 3-deox 99.9 2E-22 6.8E-27 218.4 16.4 304 247-713 43-365 (374)
26 3t5t_A Putative glycosyltransf 99.9 2.2E-20 7.6E-25 210.5 23.7 304 311-728 149-473 (496)
27 2f9f_A First mannosyl transfer 99.8 3.6E-21 1.2E-25 185.9 13.3 154 437-703 17-173 (177)
28 1v4v_A UDP-N-acetylglucosamine 99.8 1.3E-20 4.6E-25 200.2 15.1 327 243-730 6-366 (376)
29 3otg_A CALG1; calicheamicin, T 99.8 8.2E-17 2.8E-21 172.8 25.5 117 603-727 289-409 (412)
30 3s2u_A UDP-N-acetylglucosamine 99.7 3.5E-16 1.2E-20 168.8 24.6 112 606-724 235-354 (365)
31 2iyf_A OLED, oleandomycin glyc 99.7 9.9E-15 3.4E-19 158.2 26.7 116 604-727 281-400 (430)
32 3dzc_A UDP-N-acetylglucosamine 99.7 1.7E-15 5.9E-20 165.4 20.6 341 236-726 19-395 (396)
33 4fzr_A SSFS6; structural genom 99.6 6.3E-16 2.2E-20 166.2 13.8 112 603-722 281-396 (398)
34 3ia7_A CALG4; glycosysltransfe 99.6 4.9E-14 1.7E-18 150.2 24.8 117 604-728 279-400 (402)
35 3tsa_A SPNG, NDP-rhamnosyltran 99.6 5.2E-15 1.8E-19 158.2 15.7 116 603-726 267-388 (391)
36 3ot5_A UDP-N-acetylglucosamine 99.6 1.7E-14 5.9E-19 158.1 18.1 110 604-729 280-392 (403)
37 3oti_A CALG3; calicheamicin, T 99.6 1.3E-13 4.5E-18 148.4 20.5 111 603-725 280-396 (398)
38 3rsc_A CALG2; TDP, enediyne, s 99.5 8.3E-13 2.8E-17 142.2 24.9 117 603-727 294-414 (415)
39 2p6p_A Glycosyl transferase; X 99.5 1.5E-11 5.2E-16 131.2 27.9 113 605-726 263-379 (384)
40 3rhz_A GTF3, nucleotide sugar 99.4 2.4E-11 8.3E-16 130.8 23.5 108 607-721 215-329 (339)
41 2yjn_A ERYCIII, glycosyltransf 99.3 1.8E-10 6.1E-15 126.1 23.3 116 603-726 316-435 (441)
42 2iya_A OLEI, oleandomycin glyc 99.2 2.8E-09 9.4E-14 115.6 25.7 115 604-726 303-421 (424)
43 4hwg_A UDP-N-acetylglucosamine 99.2 9.5E-11 3.3E-15 128.0 12.1 88 606-704 263-353 (385)
44 4amg_A Snogd; transferase, pol 99.1 5.8E-09 2E-13 111.3 21.6 109 603-723 285-397 (400)
45 3h4t_A Glycosyltransferase GTF 99.0 4E-08 1.4E-12 106.7 26.3 112 604-725 266-381 (404)
46 1iir_A Glycosyltransferase GTF 99.0 1.8E-07 6.1E-12 101.5 29.8 115 603-730 282-400 (415)
47 2o6l_A UDP-glucuronosyltransfe 99.0 2.5E-09 8.5E-14 101.9 11.5 90 604-700 66-161 (170)
48 3q3e_A HMW1C-like glycosyltran 98.9 4.3E-09 1.5E-13 121.2 10.1 118 603-729 496-624 (631)
49 2c4m_A Glycogen phosphorylase; 98.7 5E-07 1.7E-11 106.3 21.1 203 433-730 504-721 (796)
50 2gj4_A Glycogen phosphorylase, 98.5 2.7E-06 9.3E-11 100.5 20.8 199 433-729 538-755 (824)
51 1l5w_A Maltodextrin phosphoryl 98.4 5.1E-06 1.7E-10 97.9 19.2 200 433-730 514-732 (796)
52 1rrv_A Glycosyltransferase GTF 97.8 4.3E-05 1.5E-09 82.6 10.2 95 603-705 283-381 (416)
53 4gyw_A UDP-N-acetylglucosamine 97.8 0.0003 1E-08 82.8 16.5 121 603-730 576-707 (723)
54 2c1x_A UDP-glucose flavonoid 3 97.1 0.01 3.5E-07 65.8 16.8 95 606-708 325-426 (456)
55 3hbf_A Flavonoid 3-O-glucosylt 96.6 0.046 1.6E-06 60.9 16.9 97 605-707 326-427 (454)
56 1ygp_A Yeast glycogen phosphor 96.1 0.28 9.4E-06 58.4 20.4 73 603-675 683-761 (879)
57 2pq6_A UDP-glucuronosyl/UDP-gl 96.0 0.041 1.4E-06 61.1 12.8 98 605-709 352-454 (482)
58 2acv_A Triterpene UDP-glucosyl 95.7 0.31 1.1E-05 53.9 18.3 87 606-699 332-432 (463)
59 3tov_A Glycosyl transferase fa 95.5 0.51 1.7E-05 50.2 18.1 51 607-664 243-295 (349)
60 1psw_A ADP-heptose LPS heptosy 95.1 0.12 4.2E-06 53.8 11.7 42 608-656 244-287 (348)
61 2vch_A Hydroquinone glucosyltr 94.8 0.19 6.5E-06 55.9 12.7 79 609-692 342-428 (480)
62 3hbm_A UDP-sugar hydrolase; PS 93.8 0.17 5.7E-06 53.0 8.9 45 606-657 208-252 (282)
63 2jzc_A UDP-N-acetylglucosamine 90.6 0.12 4E-06 52.5 2.8 73 607-690 115-196 (224)
64 2gt1_A Lipopolysaccharide hept 88.2 4 0.00014 42.1 12.5 79 608-693 236-322 (326)
65 3l7i_A Teichoic acid biosynthe 83.1 2.8 9.5E-05 48.9 9.1 109 605-726 597-715 (729)
66 2bw0_A 10-FTHFDH, 10-formyltet 74.4 7.2 0.00025 41.5 8.2 74 238-318 18-106 (329)
67 4g65_A TRK system potassium up 71.5 1.3E+02 0.0043 33.2 17.7 87 256-344 10-102 (461)
68 3eag_A UDP-N-acetylmuramate:L- 68.9 21 0.00072 37.3 10.2 73 243-322 5-77 (326)
69 4dzz_A Plasmid partitioning pr 65.9 19 0.00067 33.8 8.5 76 244-319 2-83 (206)
70 3ilh_A Two component response 65.0 61 0.0021 27.8 11.1 86 607-695 37-141 (146)
71 3e8x_A Putative NAD-dependent 64.0 24 0.00083 34.1 9.0 72 241-320 20-93 (236)
72 3lk7_A UDP-N-acetylmuramoylala 63.8 18 0.00062 39.6 8.8 74 241-322 8-83 (451)
73 1k68_A Phytochrome response re 62.7 70 0.0024 27.1 11.4 87 603-692 26-130 (140)
74 3heb_A Response regulator rece 61.9 57 0.0019 28.7 10.4 86 603-691 28-133 (152)
75 3jte_A Response regulator rece 61.1 72 0.0025 27.5 10.8 86 607-695 29-125 (143)
76 3dfz_A SIRC, precorrin-2 dehyd 60.5 8.2 0.00028 38.9 4.9 71 241-321 30-101 (223)
77 3q0i_A Methionyl-tRNA formyltr 60.5 19 0.00065 38.1 7.9 72 240-318 5-92 (318)
78 3h1g_A Chemotaxis protein CHEY 60.0 81 0.0028 26.8 11.6 68 623-693 51-127 (129)
79 3kht_A Response regulator; PSI 59.6 61 0.0021 28.1 10.1 87 603-692 29-127 (144)
80 1k66_A Phytochrome response re 56.1 97 0.0033 26.6 11.1 87 603-692 30-137 (149)
81 3tqq_A Methionyl-tRNA formyltr 55.9 18 0.00061 38.2 6.7 71 241-318 1-87 (314)
82 1rrv_A Glycosyltransferase GTF 54.1 13 0.00043 39.5 5.3 54 244-302 2-55 (416)
83 3gem_A Short chain dehydrogena 54.1 23 0.0008 35.4 7.0 74 242-321 26-109 (260)
84 3hzh_A Chemotaxis response reg 52.8 1.2E+02 0.0042 26.8 11.2 80 610-692 66-156 (157)
85 3dlo_A Universal stress protei 49.0 52 0.0018 30.0 8.0 90 228-319 10-125 (155)
86 3grc_A Sensor protein, kinase; 48.6 1.3E+02 0.0044 25.7 10.7 83 608-693 33-127 (140)
87 4hv4_A UDP-N-acetylmuramate--L 48.2 32 0.0011 38.3 7.5 71 243-323 23-93 (494)
88 4e7p_A Response regulator; DNA 47.6 1.4E+02 0.0048 26.0 10.5 84 607-693 48-140 (150)
89 3hn7_A UDP-N-acetylmuramate-L- 47.0 56 0.0019 36.6 9.3 75 241-323 18-92 (524)
90 3cg4_A Response regulator rece 46.6 1.4E+02 0.0047 25.5 10.4 83 607-692 33-126 (142)
91 1xv5_A AGT, DNA alpha-glucosyl 46.6 2.4E+02 0.0083 28.4 19.9 96 615-713 279-387 (401)
92 1i3c_A Response regulator RCP1 46.0 1.5E+02 0.0052 25.8 11.3 82 607-691 36-135 (149)
93 2zay_A Response regulator rece 45.2 1.5E+02 0.0051 25.5 10.6 84 607-693 34-128 (147)
94 1fmt_A Methionyl-tRNA FMet for 45.2 40 0.0014 35.5 7.3 69 242-317 3-87 (314)
95 1qgu_B Protein (nitrogenase mo 44.4 50 0.0017 37.2 8.4 83 231-320 349-443 (519)
96 1id1_A Putative potassium chan 43.8 54 0.0018 29.7 7.2 73 240-320 1-80 (153)
97 1qkk_A DCTD, C4-dicarboxylate 43.6 1.6E+02 0.0056 25.7 10.4 86 607-695 29-123 (155)
98 3i6i_A Putative leucoanthocyan 43.5 39 0.0013 34.8 6.9 62 260-321 22-93 (346)
99 3lua_A Response regulator rece 43.3 77 0.0026 27.3 7.9 86 607-695 31-129 (140)
100 3u7q_B Nitrogenase molybdenum- 42.9 72 0.0025 35.9 9.4 83 231-320 353-447 (523)
101 2z1m_A GDP-D-mannose dehydrata 41.9 55 0.0019 33.1 7.7 64 258-321 13-85 (345)
102 1pjq_A CYSG, siroheme synthase 41.1 44 0.0015 36.8 7.2 72 241-322 11-83 (457)
103 3eul_A Possible nitrate/nitrit 41.1 1.8E+02 0.0061 25.3 10.2 82 610-694 46-136 (152)
104 3kcn_A Adenylate cyclase homol 41.0 1.8E+02 0.0062 25.3 11.0 87 607-696 29-126 (151)
105 2j48_A Two-component sensor ki 41.0 1.4E+02 0.0048 24.0 9.0 83 607-692 27-117 (119)
106 2r8r_A Sensor protein; KDPD, P 40.7 47 0.0016 33.6 6.7 44 244-287 6-49 (228)
107 2bln_A Protein YFBG; transfera 40.4 57 0.0019 34.1 7.6 62 256-317 7-81 (305)
108 3ruf_A WBGU; rossmann fold, UD 39.6 1.2E+02 0.0041 30.8 9.9 64 258-321 35-110 (351)
109 1hdo_A Biliverdin IX beta redu 39.2 62 0.0021 29.9 7.0 61 258-320 13-76 (206)
110 3n53_A Response regulator rece 39.0 1.8E+02 0.0062 24.8 10.6 85 607-694 28-123 (140)
111 3h5i_A Response regulator/sens 39.0 1.9E+02 0.0063 24.9 12.5 84 607-693 31-124 (140)
112 1mio_B Nitrogenase molybdenum 38.7 75 0.0026 34.9 8.6 80 234-320 304-394 (458)
113 1kyq_A Met8P, siroheme biosynt 38.0 52 0.0018 34.0 6.7 37 242-285 13-49 (274)
114 3rfo_A Methionyl-tRNA formyltr 38.0 42 0.0014 35.4 6.1 69 243-318 5-89 (317)
115 3ius_A Uncharacterized conserv 37.7 61 0.0021 32.0 7.1 56 261-320 17-72 (286)
116 3v8b_A Putative dehydrogenase, 37.4 32 0.0011 34.9 5.0 90 227-321 9-115 (283)
117 1t2a_A GDP-mannose 4,6 dehydra 37.0 74 0.0025 32.9 7.8 85 231-321 13-112 (375)
118 3fwz_A Inner membrane protein 36.9 50 0.0017 29.6 5.7 69 243-320 8-80 (140)
119 3sju_A Keto reductase; short-c 36.7 36 0.0012 34.3 5.3 77 240-321 21-111 (279)
120 1dcf_A ETR1 protein; beta-alph 36.1 1.5E+02 0.0052 25.2 8.7 84 608-694 34-130 (136)
121 3gt7_A Sensor protein; structu 36.0 2.2E+02 0.0076 24.9 11.2 83 607-692 33-126 (154)
122 3end_A Light-independent proto 35.5 76 0.0026 32.2 7.5 47 243-290 41-87 (307)
123 3pdi_B Nitrogenase MOFE cofact 35.4 30 0.001 38.3 4.6 78 234-320 305-384 (458)
124 2qzj_A Two-component response 35.3 2.1E+02 0.0073 24.5 9.6 83 607-692 30-120 (136)
125 3enk_A UDP-glucose 4-epimerase 34.8 1.1E+02 0.0036 31.0 8.5 75 242-321 4-88 (341)
126 2gkg_A Response regulator homo 34.6 1.9E+02 0.0065 23.7 9.8 84 607-694 31-126 (127)
127 2pk3_A GDP-6-deoxy-D-LYXO-4-he 34.5 96 0.0033 31.1 8.0 76 234-321 4-84 (321)
128 3oid_A Enoyl-[acyl-carrier-pro 34.1 66 0.0023 31.9 6.7 75 240-320 1-91 (258)
129 3gl9_A Response regulator; bet 34.1 2.1E+02 0.0071 24.0 11.2 83 607-692 28-121 (122)
130 1j6u_A UDP-N-acetylmuramate-al 34.0 39 0.0013 37.2 5.3 66 252-323 18-83 (469)
131 1jx7_A Hypothetical protein YC 33.9 71 0.0024 27.4 6.1 38 243-280 2-42 (117)
132 2qsj_A DNA-binding response re 33.7 1.5E+02 0.0052 25.8 8.4 84 607-693 31-124 (154)
133 3b6i_A Flavoprotein WRBA; flav 33.7 95 0.0032 29.0 7.4 71 244-321 3-78 (198)
134 3llv_A Exopolyphosphatase-rela 33.4 1.7E+02 0.0058 25.6 8.7 60 259-320 16-79 (141)
135 2x5o_A UDP-N-acetylmuramoylala 33.3 60 0.002 35.3 6.6 72 241-322 4-75 (439)
136 3slg_A PBGP3 protein; structur 33.3 67 0.0023 33.1 6.8 84 230-321 13-101 (372)
137 2wm3_A NMRA-like family domain 33.2 1E+02 0.0035 30.7 7.9 61 260-320 17-81 (299)
138 2qvg_A Two component response 33.1 2.3E+02 0.0077 24.1 11.2 86 603-691 31-133 (143)
139 3osu_A 3-oxoacyl-[acyl-carrier 32.9 55 0.0019 32.0 5.8 75 242-321 3-92 (246)
140 4e3z_A Putative oxidoreductase 32.9 72 0.0025 31.7 6.7 79 237-321 20-114 (272)
141 2ph1_A Nucleotide-binding prot 32.4 76 0.0026 31.4 6.8 44 242-285 17-60 (262)
142 1rkx_A CDP-glucose-4,6-dehydra 32.3 1.6E+02 0.0056 29.9 9.5 74 240-320 7-89 (357)
143 3oec_A Carveol dehydrogenase ( 32.2 1.2E+02 0.0041 31.1 8.4 56 221-281 23-79 (317)
144 3mm4_A Histidine kinase homolo 32.2 3.2E+02 0.011 25.6 11.8 85 607-696 88-199 (206)
145 1ek6_A UDP-galactose 4-epimera 32.0 1.1E+02 0.0039 30.9 8.2 64 258-321 12-91 (348)
146 4hp8_A 2-deoxy-D-gluconate 3-d 31.9 54 0.0018 33.3 5.6 73 243-320 9-88 (247)
147 3hv2_A Response regulator/HD d 31.7 2.6E+02 0.0088 24.3 11.7 84 607-693 40-133 (153)
148 3q9l_A Septum site-determining 31.5 88 0.003 30.4 7.0 39 244-282 3-41 (260)
149 2ew8_A (S)-1-phenylethanol deh 31.5 88 0.003 30.6 7.0 74 243-321 7-92 (249)
150 4dad_A Putative pilus assembly 31.4 1.5E+02 0.0053 25.5 8.0 69 622-693 66-141 (146)
151 3h7a_A Short chain dehydrogena 31.1 94 0.0032 30.6 7.2 73 243-321 7-93 (252)
152 2xj4_A MIPZ; replication, cell 31.1 59 0.002 32.8 5.8 44 243-286 4-48 (286)
153 2q2v_A Beta-D-hydroxybutyrate 31.0 74 0.0025 31.2 6.4 72 244-320 5-88 (255)
154 2gwr_A DNA-binding response re 31.0 3.5E+02 0.012 25.7 12.0 82 608-692 32-121 (238)
155 3klj_A NAD(FAD)-dependent dehy 30.8 48 0.0016 35.3 5.2 71 242-319 146-227 (385)
156 3t6k_A Response regulator rece 30.6 2.5E+02 0.0087 23.9 11.5 85 607-694 30-125 (136)
157 4fgs_A Probable dehydrogenase 30.5 41 0.0014 34.6 4.5 82 233-320 16-112 (273)
158 1rpn_A GDP-mannose 4,6-dehydra 30.0 1.6E+02 0.0056 29.5 8.9 67 255-321 21-96 (335)
159 3dm5_A SRP54, signal recogniti 30.0 1.6E+02 0.0053 32.6 9.3 77 243-320 100-191 (443)
160 3la6_A Tyrosine-protein kinase 30.0 82 0.0028 32.3 6.7 44 242-285 91-134 (286)
161 3m2p_A UDP-N-acetylglucosamine 29.7 1.6E+02 0.0055 29.4 8.8 59 257-320 11-71 (311)
162 2pq6_A UDP-glucuronosyl/UDP-gl 29.2 48 0.0017 36.3 5.0 37 243-281 9-45 (482)
163 1mb3_A Cell division response 29.0 2.4E+02 0.0082 23.2 11.0 82 608-692 28-120 (124)
164 1n7h_A GDP-D-mannose-4,6-dehyd 28.9 1.2E+02 0.004 31.4 7.8 64 258-321 38-116 (381)
165 3hdv_A Response regulator; PSI 28.7 2.6E+02 0.009 23.5 11.5 85 607-694 33-128 (136)
166 1ydg_A Trp repressor binding p 28.1 1.6E+02 0.0053 28.0 8.0 40 242-283 6-46 (211)
167 2pln_A HP1043, response regula 28.1 2.7E+02 0.0093 23.5 10.7 80 607-693 44-133 (137)
168 2o23_A HADH2 protein; HSD17B10 28.0 1.3E+02 0.0046 29.1 7.7 72 243-320 12-95 (265)
169 2rjn_A Response regulator rece 28.0 3E+02 0.01 23.9 10.2 86 607-695 33-128 (154)
170 2a5l_A Trp repressor binding p 27.9 81 0.0028 29.6 5.8 39 242-282 5-44 (200)
171 3tpc_A Short chain alcohol deh 27.8 1.2E+02 0.0042 29.7 7.3 73 243-321 7-91 (257)
172 1g3q_A MIND ATPase, cell divis 27.7 1.2E+02 0.0039 29.1 7.0 40 244-283 3-42 (237)
173 4fn4_A Short chain dehydrogena 27.7 66 0.0023 32.6 5.4 74 243-321 7-94 (254)
174 3r6d_A NAD-dependent epimerase 27.6 1.2E+02 0.0043 28.6 7.2 60 260-321 17-83 (221)
175 3u5t_A 3-oxoacyl-[acyl-carrier 27.3 72 0.0025 31.9 5.6 76 240-321 24-115 (267)
176 3mcu_A Dipicolinate synthase, 27.3 45 0.0015 33.2 3.9 40 241-284 4-44 (207)
177 3cnb_A DNA-binding response re 27.3 2.8E+02 0.0096 23.3 11.6 84 608-694 37-131 (143)
178 1p3d_A UDP-N-acetylmuramate--a 27.2 1.4E+02 0.0048 32.7 8.3 69 243-321 19-87 (475)
179 2q1w_A Putative nucleotide sug 27.1 1.4E+02 0.0046 30.4 7.7 63 258-321 31-99 (333)
180 1byi_A Dethiobiotin synthase; 27.0 72 0.0025 30.4 5.3 35 244-278 2-36 (224)
181 3lqk_A Dipicolinate synthase s 27.0 50 0.0017 32.6 4.2 40 240-283 5-45 (201)
182 2qjw_A Uncharacterized protein 27.0 54 0.0019 29.1 4.2 39 242-280 3-41 (176)
183 3tfo_A Putative 3-oxoacyl-(acy 26.9 85 0.0029 31.4 6.0 76 241-321 2-91 (264)
184 3m6m_D Sensory/regulatory prot 26.8 3.1E+02 0.011 23.7 11.4 84 607-693 40-136 (143)
185 3ctm_A Carbonyl reductase; alc 26.6 1.2E+02 0.0043 29.8 7.2 33 242-279 33-65 (279)
186 3to5_A CHEY homolog; alpha(5)b 26.5 3.5E+02 0.012 24.2 11.8 98 591-692 24-132 (134)
187 1uls_A Putative 3-oxoacyl-acyl 26.4 1.4E+02 0.0048 29.1 7.4 71 243-320 5-86 (245)
188 3qjg_A Epidermin biosynthesis 26.3 44 0.0015 32.3 3.6 38 242-283 5-42 (175)
189 1p2f_A Response regulator; DRR 26.2 1.8E+02 0.0061 27.3 7.9 83 607-692 27-116 (220)
190 3sxp_A ADP-L-glycero-D-mannohe 26.1 2.2E+02 0.0075 29.1 9.2 66 255-320 17-99 (362)
191 1hyq_A MIND, cell division inh 25.9 74 0.0025 31.2 5.3 39 244-282 3-41 (263)
192 1dbw_A Transcriptional regulat 25.8 2.9E+02 0.0098 23.0 10.2 83 608-693 30-121 (126)
193 3ic5_A Putative saccharopine d 25.8 1.7E+02 0.0059 24.2 7.0 57 261-319 17-77 (118)
194 2g1u_A Hypothetical protein TM 25.7 3.6E+02 0.012 24.1 9.7 71 242-321 19-94 (155)
195 3rd5_A Mypaa.01249.C; ssgcid, 25.6 94 0.0032 31.2 6.1 73 243-321 16-96 (291)
196 3rqi_A Response regulator prot 25.5 2.1E+02 0.0073 26.1 8.2 84 607-693 33-125 (184)
197 3k9g_A PF-32 protein; ssgcid, 25.4 67 0.0023 31.7 4.9 45 242-287 26-70 (267)
198 3pg5_A Uncharacterized protein 25.4 73 0.0025 33.6 5.4 47 244-290 2-48 (361)
199 1yo6_A Putative carbonyl reduc 25.3 1.6E+02 0.0053 28.1 7.4 60 260-321 15-91 (250)
200 2bc0_A NADH oxidase; flavoprot 25.2 1.2E+02 0.0041 33.1 7.3 53 241-300 193-256 (490)
201 3nrc_A Enoyl-[acyl-carrier-pro 25.0 1.1E+02 0.0039 30.4 6.6 76 243-321 26-113 (280)
202 3ea0_A ATPase, para family; al 24.9 80 0.0027 30.4 5.2 42 242-283 3-45 (245)
203 3bfv_A CAPA1, CAPB2, membrane 24.8 1.3E+02 0.0043 30.5 6.9 44 242-285 81-124 (271)
204 2xxa_A Signal recognition part 24.8 2.1E+02 0.0072 31.2 9.1 77 243-320 100-192 (433)
205 3zq6_A Putative arsenical pump 24.7 1E+02 0.0034 32.0 6.3 47 244-290 14-60 (324)
206 3kvo_A Hydroxysteroid dehydrog 24.7 1.6E+02 0.0056 30.7 8.0 74 243-321 45-139 (346)
207 2f00_A UDP-N-acetylmuramate--L 24.7 1.4E+02 0.0047 32.9 7.7 70 243-322 20-89 (491)
208 3sc4_A Short chain dehydrogena 24.2 1.4E+02 0.0048 29.9 7.1 75 242-321 8-103 (285)
209 4f82_A Thioredoxin reductase; 24.1 1.4E+02 0.0046 28.8 6.6 53 228-280 30-91 (176)
210 1cyd_A Carbonyl reductase; sho 24.1 1.6E+02 0.0056 28.1 7.3 70 244-320 8-85 (244)
211 1p6q_A CHEY2; chemotaxis, sign 24.0 3.1E+02 0.011 22.7 10.4 83 607-692 33-126 (129)
212 4ds3_A Phosphoribosylglycinami 24.0 1.3E+02 0.0045 29.7 6.6 74 240-318 5-93 (209)
213 4imr_A 3-oxoacyl-(acyl-carrier 23.8 1.8E+02 0.0063 29.0 7.9 73 243-321 33-119 (275)
214 3qiv_A Short-chain dehydrogena 23.8 1.2E+02 0.0039 29.6 6.2 75 242-321 8-96 (253)
215 3e03_A Short chain dehydrogena 23.7 1.6E+02 0.0054 29.3 7.3 34 242-280 5-38 (274)
216 3u7r_A NADPH-dependent FMN red 23.6 75 0.0026 30.8 4.7 40 241-280 1-40 (190)
217 1wcv_1 SOJ, segregation protei 23.6 61 0.0021 32.0 4.2 43 243-285 6-48 (257)
218 3hdg_A Uncharacterized protein 23.5 3.3E+02 0.011 22.9 11.0 84 607-693 33-125 (137)
219 3gk3_A Acetoacetyl-COA reducta 23.5 1.5E+02 0.005 29.3 7.0 77 240-321 22-113 (269)
220 3eod_A Protein HNR; response r 23.4 3.2E+02 0.011 22.7 10.5 84 607-693 33-126 (130)
221 3cfy_A Putative LUXO repressor 23.4 3.5E+02 0.012 23.1 11.0 83 607-692 30-121 (137)
222 3awd_A GOX2181, putative polyo 23.3 1E+02 0.0034 30.0 5.7 74 243-321 13-100 (260)
223 3c85_A Putative glutathione-re 23.3 1.1E+02 0.0039 28.2 5.8 70 242-320 39-114 (183)
224 1rcu_A Conserved hypothetical 23.2 47 0.0016 32.7 3.2 44 614-661 109-154 (195)
225 1ys7_A Transcriptional regulat 23.2 4.6E+02 0.016 24.4 11.8 83 607-692 33-124 (233)
226 3nhm_A Response regulator; pro 23.1 3.3E+02 0.011 22.7 11.5 85 607-694 29-123 (133)
227 3ouz_A Biotin carboxylase; str 23.0 1.7E+02 0.0058 31.4 7.9 37 239-282 3-39 (446)
228 2ark_A Flavodoxin; FMN, struct 22.9 63 0.0022 30.5 4.0 38 243-282 5-44 (188)
229 2r25_B Osmosensing histidine p 22.9 3.5E+02 0.012 22.9 11.8 67 624-693 53-127 (133)
230 3tjr_A Short chain dehydrogena 22.7 94 0.0032 31.6 5.5 74 243-321 31-118 (301)
231 3ijp_A DHPR, dihydrodipicolina 22.7 1.7E+02 0.0057 30.5 7.4 45 615-661 80-124 (288)
232 1jkx_A GART;, phosphoribosylgl 22.6 3.4E+02 0.012 26.6 9.4 59 260-318 13-86 (212)
233 2r6j_A Eugenol synthase 1; phe 22.6 2.5E+02 0.0084 28.1 8.6 71 243-320 12-88 (318)
234 1sb8_A WBPP; epimerase, 4-epim 22.5 3.5E+02 0.012 27.4 9.9 62 259-321 38-112 (352)
235 3fni_A Putative diflavin flavo 22.5 1.5E+02 0.0052 27.3 6.5 64 242-322 4-67 (159)
236 3rkr_A Short chain oxidoreduct 22.5 1.1E+02 0.0037 30.2 5.8 72 243-321 29-116 (262)
237 3l4e_A Uncharacterized peptida 22.4 1.6E+02 0.0055 28.8 6.9 64 589-658 44-122 (206)
238 2zki_A 199AA long hypothetical 22.4 1.1E+02 0.0037 28.8 5.5 39 243-283 5-43 (199)
239 3av3_A Phosphoribosylglycinami 22.4 1.2E+02 0.0041 29.9 6.0 71 243-318 4-89 (212)
240 2rdm_A Response regulator rece 22.3 3.4E+02 0.011 22.5 10.2 85 607-694 31-124 (132)
241 3tzq_B Short-chain type dehydr 22.3 1.7E+02 0.0058 29.0 7.3 74 243-322 11-96 (271)
242 3i42_A Response regulator rece 22.2 3.4E+02 0.011 22.5 9.4 85 607-694 29-123 (127)
243 3zqu_A Probable aromatic acid 22.1 1E+02 0.0035 30.6 5.4 36 241-279 3-38 (209)
244 3mc3_A DSRE/DSRF-like family p 22.1 1.5E+02 0.0051 26.8 6.1 40 242-281 15-55 (134)
245 3cio_A ETK, tyrosine-protein k 22.0 1.5E+02 0.0052 30.3 6.9 42 242-283 103-144 (299)
246 3uf0_A Short-chain dehydrogena 22.0 2E+02 0.0068 28.7 7.7 72 243-321 31-116 (273)
247 1qzu_A Hypothetical protein MD 21.8 41 0.0014 33.4 2.4 44 233-279 10-54 (206)
248 4dqx_A Probable oxidoreductase 21.6 1E+02 0.0035 30.9 5.5 33 242-279 26-58 (277)
249 3pfb_A Cinnamoyl esterase; alp 21.6 1E+02 0.0035 29.1 5.2 42 243-284 46-87 (270)
250 2qxy_A Response regulator; reg 21.6 3.7E+02 0.013 22.7 9.3 84 607-694 30-122 (142)
251 2afh_E Nitrogenase iron protei 21.5 1.6E+02 0.0055 29.4 6.9 46 244-290 3-48 (289)
252 2wqk_A 5'-nucleotidase SURE; S 21.4 2.6E+02 0.0088 28.4 8.3 98 244-345 3-128 (251)
253 3qvo_A NMRA family protein; st 21.3 82 0.0028 30.4 4.5 59 259-319 34-96 (236)
254 3q9s_A DNA-binding response re 21.3 4.5E+02 0.016 25.4 10.1 83 607-692 63-153 (249)
255 4e08_A DJ-1 beta; flavodoxin-l 21.3 2.5E+02 0.0085 26.3 7.9 72 241-319 4-75 (190)
256 4g81_D Putative hexonate dehyd 21.3 74 0.0025 32.3 4.3 71 243-320 9-95 (255)
257 3oig_A Enoyl-[acyl-carrier-pro 21.3 4E+02 0.014 25.9 9.7 74 243-321 7-97 (266)
258 4egb_A DTDP-glucose 4,6-dehydr 21.2 1.6E+02 0.0053 29.9 6.8 64 258-321 34-108 (346)
259 2phj_A 5'-nucleotidase SURE; S 21.2 2.3E+02 0.0079 28.9 7.9 95 246-344 4-127 (251)
260 4fbl_A LIPS lipolytic enzyme; 21.1 79 0.0027 31.1 4.4 38 246-285 54-91 (281)
261 2ixd_A LMBE-related protein; h 21.0 1.4E+02 0.0048 30.0 6.2 42 240-283 1-42 (242)
262 3itj_A Thioredoxin reductase 1 21.0 60 0.002 32.5 3.5 54 239-299 170-228 (338)
263 1cp2_A CP2, nitrogenase iron p 20.9 1.5E+02 0.0052 29.0 6.5 46 244-290 2-47 (269)
264 3f6r_A Flavodoxin; FMN binding 20.8 1.3E+02 0.0043 26.9 5.4 39 243-282 2-40 (148)
265 3icc_A Putative 3-oxoacyl-(acy 20.8 1.3E+02 0.0043 29.2 5.8 56 240-300 4-62 (255)
266 3r3s_A Oxidoreductase; structu 20.7 1.4E+02 0.0049 30.0 6.4 75 242-321 48-138 (294)
267 3r1i_A Short-chain type dehydr 20.6 1.7E+02 0.0057 29.3 6.8 73 243-321 32-119 (276)
268 3afn_B Carbonyl reductase; alp 20.5 2.2E+02 0.0076 27.3 7.5 73 244-321 8-95 (258)
269 3m1a_A Putative dehydrogenase; 20.5 2.2E+02 0.0075 28.1 7.6 73 243-321 5-89 (281)
270 3cwq_A Para family chromosome 20.4 1.1E+02 0.0038 29.4 5.2 46 244-290 1-46 (209)
271 3r0j_A Possible two component 20.3 5.7E+02 0.019 24.4 12.1 83 607-692 49-140 (250)
272 3c97_A Signal transduction his 20.3 4E+02 0.014 22.6 11.2 84 607-693 36-130 (140)
273 2oze_A ORF delta'; para, walke 20.3 1.3E+02 0.0044 30.2 5.9 49 242-290 34-83 (298)
274 2bka_A CC3, TAT-interacting pr 20.1 2E+02 0.007 27.3 7.1 60 260-321 30-94 (242)
275 3qlj_A Short chain dehydrogena 20.1 1E+02 0.0036 31.5 5.2 74 243-321 27-124 (322)
276 1p3y_1 MRSD protein; flavoprot 20.0 60 0.002 31.9 3.1 37 240-279 6-42 (194)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.1e-37 Score=328.20 Aligned_cols=351 Identities=19% Similarity=0.278 Sum_probs=279.1
Q ss_pred ccCCeEEEEeCCCC--CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH-HhCCcEEEEcCCCch-----------
Q 004760 240 VWSRKFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEPS----------- 305 (732)
Q Consensus 240 ~~~~kIllI~h~ls--~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el-~~~gI~v~~~~~~~~----------- 305 (732)
|++.||++|++... .||++..+.+||++| .||+|.+++....+.....+ ...+++++..+....
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPTPTTAHAMA 79 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSSCCSCHHHHHHHH
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEccccccccchhhHHHHH
Confidence 45689999999776 899999999999999 69999999965544322333 467899988765431
Q ss_pred -hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHh------HHHhhhhhccccEEEEecHHhHHHhhh
Q 004760 306 -FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY------FDRAKLVLDRVKLLVFLSESQTKQWLT 378 (732)
Q Consensus 306 -~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~------~~~~~~~l~r~~~li~vS~~~~~~~~~ 378 (732)
+.+..+||+||+++.....++..+.. ..+.+++++.+|.....+ ....+..+.+++.++++|+........
T Consensus 80 ~~~~~~~~Dvv~~~~~~~~~~~~~~~~--~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 157 (394)
T 3okp_A 80 EIIREREIDNVWFGAAAPLALMAGTAK--QAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKS 157 (394)
T ss_dssp HHHHHTTCSEEEESSCTTGGGGHHHHH--HTTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCcchHHHHHHHHH--hcCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHH
Confidence 33477999999987655544433322 335666888776432111 111234456689999999987543111
Q ss_pred HHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCH
Q 004760 379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQ 458 (732)
Q Consensus 379 ~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~ 458 (732)
. .+ + ...+.+||||+|.+.|.+....+ +..+|+.+|++++.++|+++|++.+.||+
T Consensus 158 ~-------~~--~----------~~~~~vi~ngv~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~ 213 (394)
T 3okp_A 158 A-------FG--S----------HPTFEHLPSGVDVKRFTPATPED-----KSATRKKLGFTDTTPVIACNSRLVPRKGQ 213 (394)
T ss_dssp H-------HC--S----------SSEEEECCCCBCTTTSCCCCHHH-----HHHHHHHTTCCTTCCEEEEESCSCGGGCH
T ss_pred h-------cC--C----------CCCeEEecCCcCHHHcCCCCchh-----hHHHHHhcCCCcCceEEEEEeccccccCH
Confidence 1 11 1 12458999999999998743322 36789999999988999999999999999
Q ss_pred HHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCC
Q 004760 459 LLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLS 538 (732)
Q Consensus 459 d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~ 538 (732)
+.+++|+..+.++.++
T Consensus 214 ~~li~a~~~l~~~~~~---------------------------------------------------------------- 229 (394)
T 3okp_A 214 DSLIKAMPQVIAARPD---------------------------------------------------------------- 229 (394)
T ss_dssp HHHHHHHHHHHHHSTT----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhCCC----------------------------------------------------------------
Confidence 9999999999887665
Q ss_pred CCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hh
Q 004760 539 PSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TR 616 (732)
Q Consensus 539 p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~d 616 (732)
.+++++|+|+..+.++.++. ++.++|.|+|++ ++
T Consensus 230 ---------------------~~l~i~G~g~~~~~l~~~~~-----------------------~~~~~v~~~g~~~~~~ 265 (394)
T 3okp_A 230 ---------------------AQLLIVGSGRYESTLRRLAT-----------------------DVSQNVKFLGRLEYQD 265 (394)
T ss_dssp ---------------------CEEEEECCCTTHHHHHHHTG-----------------------GGGGGEEEEESCCHHH
T ss_pred ---------------------eEEEEEcCchHHHHHHHHHh-----------------------cccCeEEEcCCCCHHH
Confidence 35788898887777766652 566899999988 89
Q ss_pred HHHHHHHcCEEEEccCCCC-------CCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHH
Q 004760 617 VASLYSAADVYVINSQGLG-------ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (732)
Q Consensus 617 v~~lysaADv~V~pS~~~~-------Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~ 689 (732)
+..+|+.||++|+||. . |+||++++||||||+|||+++.||..|++.++ +|++++++|+ ++|+++|.+
T Consensus 266 ~~~~~~~ad~~v~ps~--~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~--~~l~~~i~~ 340 (394)
T 3okp_A 266 MINTLAAADIFAMPAR--TRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDV--DKLSELLIE 340 (394)
T ss_dssp HHHHHHHCSEEEECCC--CBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCH--HHHHHHHHH
T ss_pred HHHHHHhCCEEEecCc--cccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCH--HHHHHHHHH
Confidence 9999999999999998 7 99999999999999999999999999999998 9999999888 999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 690 LLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 690 LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
+++|++.+++|++++++.++++|+|+.+++++.++|+++.+.
T Consensus 341 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~ 382 (394)
T 3okp_A 341 LLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRK 382 (394)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC-
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999988764
No 2
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=9.3e-37 Score=329.09 Aligned_cols=383 Identities=17% Similarity=0.194 Sum_probs=268.9
Q ss_pred eccCCcchhhhcccCcccccccccccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh
Q 004760 208 VGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM 287 (732)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~ 287 (732)
|++|-+.|..|=...|.-..++--+-.++++-|++.||+++++.+..||++..+.+||++|.+.||+|.+++....+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~ 85 (416)
T 2x6q_A 6 VKEFSSGKRKLEDYKSIIGEEEVSKIQEKAEKLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFF 85 (416)
T ss_dssp CC-----CCCGGGGHHHHHHHHHHHHHHHHHTTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHH
T ss_pred ehhccccccchhccccccCchhHHHHHHhhhhhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchh
Confidence 34444444444334333333333455667888888999999999999999999999999999999999999865443221
Q ss_pred h---HHH--hCCcEEEEcCCC--ch----------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh-
Q 004760 288 P---ELA--RRKIKVLEDRGE--PS----------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR- 349 (732)
Q Consensus 288 ~---el~--~~gI~v~~~~~~--~~----------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~- 349 (732)
+ .+. -.+++.+..... .. +.+..+||+||+++.....+. .......+++|++|....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-----~~~~~~~p~v~~~h~~~~~ 160 (416)
T 2x6q_A 86 NVTKTFHNALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLVHDPQPAALI-----EFYEKKSPWLWRCHIDLSS 160 (416)
T ss_dssp HHHHHHHHHHTTCCSCCCCHHHHHHHHHHHHHHHHSSCGGGSSEEEEESSTTGGGG-----GGSCCCSCEEEECCSCCSS
T ss_pred hhhcccceeecccccccccHHHHHHHHHHHHHHHHHHhhcCCCEEEEeccchhhHH-----HHHHhcCCEEEEEccccCC
Confidence 1 111 123222222110 00 112458999999975543221 112222557777764321
Q ss_pred ---HhHHHhhhhhccccEEEE-ecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHH
Q 004760 350 ---EYFDRAKLVLDRVKLLVF-LSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREK 425 (732)
Q Consensus 350 ---~~~~~~~~~l~r~~~li~-vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ek 425 (732)
.+.......+.+.+.+++ +|+.. ...... ..+.+||||+|...+.+......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~s~~~-------------~~~~~~-----------~~~~vi~ngvd~~~~~~~~~~~~ 216 (416)
T 2x6q_A 161 PNREFWEFLRRFVEKYDRYIFHLPEYV-------------QPELDR-----------NKAVIMPPSIDPLSEKNVELKQT 216 (416)
T ss_dssp CCHHHHHHHHHHHTTSSEEEESSGGGS-------------CTTSCT-----------TTEEECCCCBCTTSTTTSCCCHH
T ss_pred ccHHHHHHHHHHHHhCCEEEEechHHH-------------HhhCCc-----------cceEEeCCCCChhhhcccccChh
Confidence 222222334445566554 33321 111111 13479999999877653211000
Q ss_pred hHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccc
Q 004760 426 RNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLL 505 (732)
Q Consensus 426 r~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll 505 (732)
.+..+|+++|++++.++|+++|++.+.||++.+++|+..+.++.|+
T Consensus 217 ---~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~------------------------------- 262 (416)
T 2x6q_A 217 ---EILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPG------------------------------- 262 (416)
T ss_dssp ---HHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTT-------------------------------
T ss_pred ---hHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCC-------------------------------
Confidence 2367889999999999999999999999999999999999877665
Q ss_pred cccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCC
Q 004760 506 QMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS 585 (732)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~ 585 (732)
.+++++|+|+...
T Consensus 263 ------------------------------------------------------~~l~i~G~g~~~~------------- 275 (416)
T 2x6q_A 263 ------------------------------------------------------VQLLLVGVMAHDD------------- 275 (416)
T ss_dssp ------------------------------------------------------CEEEEEECCCTTC-------------
T ss_pred ------------------------------------------------------eEEEEEecCcccc-------------
Confidence 2577788875310
Q ss_pred CChhhHHHHHHHHHhcCCCCCcEEEccchh-----hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCCh
Q 004760 586 NKVPYVKEILEFLSQHSNLSKAMLWTPATT-----RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT 660 (732)
Q Consensus 586 ~~~~y~k~il~~l~~~l~l~~~V~f~G~~~-----dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~ 660 (732)
+...+.++.+.+.+++.++|.|+|+.+ ++..+|++||++|+||. .|+||++++||||||+|||+|+.||+
T Consensus 276 ---~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~--~E~~~~~~lEAma~G~PvI~~~~~g~ 350 (416)
T 2x6q_A 276 ---PEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSI--REGFGLTVTEAMWKGKPVIGRAVGGI 350 (416)
T ss_dssp ---HHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCS--SCSSCHHHHHHHHTTCCEEEESCHHH
T ss_pred ---hhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCC--cCCCccHHHHHHHcCCCEEEccCCCC
Confidence 111122233334447888999999653 89999999999999998 89999999999999999999999999
Q ss_pred hhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 661 KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 661 ~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
.|++.++.+|++++ |+ ++|+++|..+++|++.+++|++++++.+++.|+|+.+++++.++|++++
T Consensus 351 ~e~i~~~~~g~l~~--d~--~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 351 KFQIVDGETGFLVR--DA--NEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHHCCBTTTEEEES--SH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred hhheecCCCeEEEC--CH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 99999999999997 55 9999999999999999999999999999989999999999999998875
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=1e-36 Score=326.94 Aligned_cols=357 Identities=16% Similarity=0.181 Sum_probs=265.4
Q ss_pred cCCeEEEEeCC---CCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhH-----------------HHhCCcEEEEc
Q 004760 241 WSRKFILIFHE---LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-----------------LARRKIKVLED 300 (732)
Q Consensus 241 ~~~kIllI~h~---ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~e-----------------l~~~gI~v~~~ 300 (732)
++.||++|+++ ...||++..+.+||++|.+.||+|++++....+..... ....|++++..
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 35689999999 56799999999999999999999999996544332110 03568888766
Q ss_pred CC----------------Cch----------hh-----hhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh
Q 004760 301 RG----------------EPS----------FK-----TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR 349 (732)
Q Consensus 301 ~~----------------~~~----------~~-----~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~ 349 (732)
+. ... +. +..+||+||+++... .++..++. ...+.+ +++++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~-~~~~~~~~-~~~~~~-~v~~~h~~~~ 157 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHT-VFAGALIK-KYFKIP-AVFTIHRLNK 157 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGG-HHHHHHHH-HHHCCC-EEEEESCCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhh-hhhHHHHh-hccCCC-EEEEeccccc
Confidence 54 000 11 145999999997533 22222232 333444 6777764321
Q ss_pred -----HhH--------------HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecC
Q 004760 350 -----EYF--------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTC 410 (732)
Q Consensus 350 -----~~~--------------~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpn 410 (732)
.++ ...+..+..++.++++|+..... .. -.++..+ + .+.+|||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~----~~~~~~~-------~----~i~vi~n 219 (439)
T 3fro_A 158 SKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLID---EW----GFFRNFE-------G----KITYVFN 219 (439)
T ss_dssp CCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHH---TH----HHHGGGT-------T----SEEECCC
T ss_pred ccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHH---Hh----hhhhhcC-------C----ceeecCC
Confidence 111 11223344588999999986432 00 0011111 2 3589999
Q ss_pred CCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCC-CCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccc
Q 004760 411 SLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN-PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (732)
Q Consensus 411 gvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~-~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~ 489 (732)
|+|...|.+..........+..+|+++|++++ ++|+++|++. +.||++.+++|++.+.++...
T Consensus 220 gvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~--------------- 283 (439)
T 3fro_A 220 GIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEF--------------- 283 (439)
T ss_dssp CCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGG---------------
T ss_pred CCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccC---------------
Confidence 99999998762100011134789999999888 9999999999 999999999999999764310
Q ss_pred cccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCch
Q 004760 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (732)
Q Consensus 490 ~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~ 569 (732)
+..+++++|.|+
T Consensus 284 --------------------------------------------------------------------~~~~l~i~G~g~ 295 (439)
T 3fro_A 284 --------------------------------------------------------------------QEMRFIIIGKGD 295 (439)
T ss_dssp --------------------------------------------------------------------GGEEEEEECCCC
T ss_pred --------------------------------------------------------------------CCeEEEEEcCCC
Confidence 124688889887
Q ss_pred hh--hhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEcc--chhhHHHHHHHcCEEEEccCCCCCCCcHHHHHH
Q 004760 570 QQ--QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTP--ATTRVASLYSAADVYVINSQGLGETFGRVTIEA 645 (732)
Q Consensus 570 ~~--~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G--~~~dv~~lysaADv~V~pS~~~~Egfg~vilEA 645 (732)
.. +.++.++ +.++ +.+.|+| ..+++..+|++||++|+||. .|+||++++||
T Consensus 296 ~~~~~~l~~~~---------------------~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EA 350 (439)
T 3fro_A 296 PELEGWARSLE---------------------EKHG--NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEA 350 (439)
T ss_dssp HHHHHHHHHHH---------------------HHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBS--CCSSCHHHHHH
T ss_pred hhHHHHHHHHH---------------------hhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCC--CCCccHHHHHH
Confidence 54 4444443 3334 6788999 44789999999999999998 89999999999
Q ss_pred HHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004760 646 MAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHMYKKLSQV 724 (732)
Q Consensus 646 MA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev 724 (732)
||||+|||+|+.||+.|+++++ +|++++++|+ ++|+++|.++++ +++.+++|++++++.+ +.|+|+.+++++.++
T Consensus 351 ma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~--~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ 426 (439)
T 3fro_A 351 MCLGAIPIASAVGGLRDIITNE-TGILVKAGDP--GELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKA 426 (439)
T ss_dssp HHTTCEEEEESSTHHHHHCCTT-TCEEECTTCH--HHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHH
T ss_pred HHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHH
Confidence 9999999999999999999887 9999999988 999999999999 9999999999999999 569999999999999
Q ss_pred HHHhhcC
Q 004760 725 IYKCMKP 731 (732)
Q Consensus 725 ~~~~l~~ 731 (732)
|++++..
T Consensus 427 ~~~~~~~ 433 (439)
T 3fro_A 427 YTGSIDR 433 (439)
T ss_dssp HHTCSCC
T ss_pred HHHHHHh
Confidence 9998764
No 4
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=7e-36 Score=319.97 Aligned_cols=349 Identities=19% Similarity=0.259 Sum_probs=259.6
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc---------h------
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------S------ 305 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~---------~------ 305 (732)
++.++...... ..||++..+.+||++|.++||+|.+++....... .....++.+....... .
T Consensus 14 ~~~~~~~~~~p-~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (394)
T 2jjm_A 14 MKLKIGITCYP-SVGGSGVVGTELGKQLAERGHEIHFITSGLPFRL--NKVYPNIYFHEVTVNQYSVFQYPPYDLALASK 90 (394)
T ss_dssp -CCEEEEECCC---CHHHHHHHHHHHHHHHTTCEEEEECSSCC------CCCTTEEEECCCCC----CCSCCHHHHHHHH
T ss_pred heeeeehhcCC-CCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcc--cccCCceEEEecccccccccccccccHHHHHH
Confidence 34566665553 4899999999999999999999999985432221 1123455554332210 0
Q ss_pred ---hhhhcCccEEEeCCchhhHHHHHHHHhhcCC-CccEEEEEeechh-------HhHHHhhhhhccccEEEEecHHhHH
Q 004760 306 ---FKTSMKADLVIAGSAVCATWIDQYITRFPAG-GSQVVWWIMENRR-------EYFDRAKLVLDRVKLLVFLSESQTK 374 (732)
Q Consensus 306 ---~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~-~~~ivw~i~e~r~-------~~~~~~~~~l~r~~~li~vS~~~~~ 374 (732)
+.+..+||+||+++.....+ ..++.....+ ..++++++|.... .+....+..+.+++.++++|+....
T Consensus 91 l~~~l~~~~~Dvv~~~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 169 (394)
T 2jjm_A 91 MAEVAQRENLDILHVHYAIPHAI-CAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLIN 169 (394)
T ss_dssp HHHHHHHHTCSEEEECSSTTHHH-HHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHH
T ss_pred HHHHHHHcCCCEEEEcchhHHHH-HHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHH
Confidence 22367999999997654332 2333333333 3457777764211 1111123345568999999998744
Q ss_pred HhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCC
Q 004760 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (732)
Q Consensus 375 ~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~ 454 (732)
. + .+....+ ..+.+||||+|.+.|.+... ..+|++++++++.++|+++|++.+
T Consensus 170 ~----~----~~~~~~~-----------~~~~vi~ngv~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~~~~ 222 (394)
T 2jjm_A 170 E----T----HELVKPN-----------KDIQTVYNFIDERVYFKRDM--------TQLKKEYGISESEKILIHISNFRK 222 (394)
T ss_dssp H----H----HHHTCCS-----------SCEEECCCCCCTTTCCCCCC--------HHHHHHTTCC---CEEEEECCCCG
T ss_pred H----H----HHhhCCc-----------ccEEEecCCccHHhcCCcch--------HHHHHHcCCCCCCeEEEEeecccc
Confidence 3 2 1111111 13489999999998876533 456788999888889999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccc
Q 004760 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (732)
Q Consensus 455 ~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 534 (732)
.||++.+++|+..+.++ ++
T Consensus 223 ~Kg~~~li~a~~~l~~~-~~------------------------------------------------------------ 241 (394)
T 2jjm_A 223 VKRVQDVVQAFAKIVTE-VD------------------------------------------------------------ 241 (394)
T ss_dssp GGTHHHHHHHHHHHHHS-SC------------------------------------------------------------
T ss_pred ccCHHHHHHHHHHHHhh-CC------------------------------------------------------------
Confidence 99999999999999765 22
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch
Q 004760 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (732)
Q Consensus 535 n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~ 614 (732)
.+++++|+|+..+.++.++. .+++.++|.|+|+.
T Consensus 242 -------------------------~~l~i~G~g~~~~~l~~~~~---------------------~~~l~~~v~~~g~~ 275 (394)
T 2jjm_A 242 -------------------------AKLLLVGDGPEFCTILQLVK---------------------NLHIEDRVLFLGKQ 275 (394)
T ss_dssp -------------------------CEEEEECCCTTHHHHHHHHH---------------------TTTCGGGBCCCBSC
T ss_pred -------------------------CEEEEECCchHHHHHHHHHH---------------------HcCCCCeEEEeCch
Confidence 25778888877666665553 33778899999999
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCH
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~ 694 (732)
+++..+|+.||++|+||. .|+||++++||||||+|||+++.||..|+++++.+|++++++|+ ++|+++|..+++|+
T Consensus 276 ~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~--~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 276 DNVAELLAMSDLMLLLSE--KESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDT--TGVADQAIQLLKDE 351 (394)
T ss_dssp SCTHHHHHTCSEEEECCS--CCSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCH--HHHHHHHHHHHHCH
T ss_pred hhHHHHHHhCCEEEeccc--cCCCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCCH--HHHHHHHHHHHcCH
Confidence 999999999999999998 99999999999999999999999999999999999999999888 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 695 SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 695 ~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
+.+++|++++++.+.+.|+|+.+++++.++|++++..
T Consensus 352 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 388 (394)
T 2jjm_A 352 ELHRNMGERARESVYEQFRSEKIVSQYETIYYDVLRD 388 (394)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988899999999999999998764
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.3e-35 Score=321.32 Aligned_cols=354 Identities=18% Similarity=0.259 Sum_probs=260.6
Q ss_pred CeEEEEeCCC---------CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChh-HHHhCCcEEEEcCCCc-------h
Q 004760 243 RKFILIFHEL---------SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP-ELARRKIKVLEDRGEP-------S 305 (732)
Q Consensus 243 ~kIllI~h~l---------s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~-el~~~gI~v~~~~~~~-------~ 305 (732)
.||++|++.. ..||++..+.+||++|.+.||+|.+++......... .....|++++..+... .
T Consensus 21 mkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~ 100 (438)
T 3c48_A 21 MRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEE 100 (438)
T ss_dssp CEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSSCCGGG
T ss_pred heeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCeEEEEecCCCccccchhH
Confidence 6899999865 359999999999999999999999999654322111 0113678887654321 0
Q ss_pred -------h--------hhhc-CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH-------------hHH--H
Q 004760 306 -------F--------KTSM-KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE-------------YFD--R 354 (732)
Q Consensus 306 -------~--------~~~~-k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~-------------~~~--~ 354 (732)
+ .+.. +||+||++.... .++ .++.....+.+ +++.+|..... ... .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~-~~~-~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 177 (438)
T 3c48_A 101 LPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLS-GQV-GWLLRDLWRIP-LIHTAHTLAAVKNSYRDDSDTPESEARRIC 177 (438)
T ss_dssp GGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHH-HHH-HHHHHHHHTCC-EEEECSSCHHHHSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCEEEeCCccH-HHH-HHHHHHHcCCC-EEEEecCCcccccccccccCCcchHHHHHH
Confidence 0 1112 599999875321 122 22222223444 66666543110 000 1
Q ss_pred hhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHH
Q 004760 355 AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVR 434 (732)
Q Consensus 355 ~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R 434 (732)
.+..+..++.++++|+..... +.+ .++..+ ..+.+||||+|.+.|.+..... +..+|
T Consensus 178 ~~~~~~~~d~ii~~s~~~~~~----~~~---~~g~~~-----------~k~~vi~ngvd~~~~~~~~~~~-----~~~~r 234 (438)
T 3c48_A 178 EQQLVDNADVLAVNTQEEMQD----LMH---HYDADP-----------DRISVVSPGADVELYSPGNDRA-----TERSR 234 (438)
T ss_dssp HHHHHHHCSEEEESSHHHHHH----HHH---HHCCCG-----------GGEEECCCCCCTTTSCCC---------CHHHH
T ss_pred HHHHHhcCCEEEEcCHHHHHH----HHH---HhCCCh-----------hheEEecCCccccccCCcccch-----hhhhH
Confidence 123445589999999987543 210 123322 2358999999999887654321 24578
Q ss_pred HHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCc
Q 004760 435 KEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLS 514 (732)
Q Consensus 435 ~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~ 514 (732)
+++|++++.++|+++|++.+.||++.+++|+..+.++.|..
T Consensus 235 ~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~--------------------------------------- 275 (438)
T 3c48_A 235 RELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDR--------------------------------------- 275 (438)
T ss_dssp HHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTC---------------------------------------
T ss_pred HhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCc---------------------------------------
Confidence 99999989999999999999999999999999998876630
Q ss_pred ccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccC----chhhhhHhhhhhccCCCCCChhh
Q 004760 515 SNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSD----GKQQQALKILIGSVGSKSNKVPY 590 (732)
Q Consensus 515 ~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~----G~~~~~Lk~li~~~G~~~~~~~y 590 (732)
..+++++|. |+..+.++.++
T Consensus 276 --------------------------------------------~~~l~i~G~~~~~g~~~~~l~~~~------------ 299 (438)
T 3c48_A 276 --------------------------------------------NLRVIICGGPSGPNATPDTYRHMA------------ 299 (438)
T ss_dssp --------------------------------------------SEEEEEECCBC------CHHHHHH------------
T ss_pred --------------------------------------------ceEEEEEeCCCCCCcHHHHHHHHH------------
Confidence 135667777 54444444444
Q ss_pred HHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCc
Q 004760 591 VKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNV 668 (732)
Q Consensus 591 ~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~ 668 (732)
+.+++.++|.|+|++ +++..+|+.||++|+||. .|+||++++||||||+|||+++.+|..|++.++.
T Consensus 300 ---------~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~ 368 (438)
T 3c48_A 300 ---------EELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSF--NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGE 368 (438)
T ss_dssp ---------HHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTT
T ss_pred ---------HHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECcc--ccCCchHHHHHHHcCCCEEecCCCChhHHhhCCC
Confidence 334788899999988 789999999999999997 9999999999999999999999999999999999
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 669 TGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 669 ~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
+|++++++|+ ++|+++|.++++|++.+++|++++++.+++ |+|+.+++++.++|++++..
T Consensus 369 ~g~~~~~~d~--~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~ 428 (438)
T 3c48_A 369 TGLLVDGHSP--HAWADALATLLDDDETRIRMGEDAVEHART-FSWAATAAQLSSLYNDAIAN 428 (438)
T ss_dssp TEEEESSCCH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred cEEECCCCCH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhh
Confidence 9999998888 999999999999999999999999999998 99999999999999998764
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=2.5e-35 Score=326.73 Aligned_cols=370 Identities=15% Similarity=0.176 Sum_probs=266.2
Q ss_pred CeEEEEeCCC-------------CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhH----HH----hCCcEEEEcC
Q 004760 243 RKFILIFHEL-------------SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE----LA----RRKIKVLEDR 301 (732)
Q Consensus 243 ~kIllI~h~l-------------s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~e----l~----~~gI~v~~~~ 301 (732)
.||++|++.. ..||++..+.+||++|.+.||+|++++....+...+. +. ..|++++..+
T Consensus 8 MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~ 87 (499)
T 2r60_A 8 KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIP 87 (499)
T ss_dssp CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEEC
T ss_pred ceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEec
Confidence 6999999853 5799999999999999999999999996543321111 21 3688888765
Q ss_pred CCc------------------hh---hhh--cCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhH------
Q 004760 302 GEP------------------SF---KTS--MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYF------ 352 (732)
Q Consensus 302 ~~~------------------~~---~~~--~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~------ 352 (732)
... .+ .++ .+||+||+|+.. ..++. .+.....+.+ +++++|.......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~-~~~~~-~~~~~~~~~p-~v~~~H~~~~~~~~~~~~~ 164 (499)
T 2r60_A 88 FGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGD-GGLAG-VLLKNIKGLP-FTFTGHSLGAQKMEKLNVN 164 (499)
T ss_dssp CSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHH-HHHHH-HHHHHHHCCC-EEEECSSCHHHHHHTTCCC
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCc-chHHH-HHHHHhcCCc-EEEEccCcccccchhhccC
Confidence 321 01 112 589999998642 22222 2222233445 6677765321100
Q ss_pred -----------------HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhh---cc-CCCccccccCCCccceEEeecCC
Q 004760 353 -----------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK---LR-SQPAVVPLSVNDELAFVAGFTCS 411 (732)
Q Consensus 353 -----------------~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~---l~-~~~~~v~l~~n~~~~~v~vIpng 411 (732)
...+..+..++.++++|+..... + .. ++ ... ......+.+||||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~----~----~~~~~~g~~~~-------~~~~~ki~vi~ng 229 (499)
T 2r60_A 165 TSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFG----Q----YSHDLYRGAVN-------VEDDDKFSVIPPG 229 (499)
T ss_dssp STTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHH----T----TTSGGGTTTCC-------TTCGGGEEECCCC
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHH----H----Hhhhccccccc-------ccCCCCeEEECCC
Confidence 01123445589999999987442 1 11 11 100 0001245899999
Q ss_pred CCCCCCCchhhHHHhHHhHHHHHHHhC-----CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhcccc
Q 004760 412 LNTPTSSPEKMREKRNLLRDSVRKEMG-----LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNV 486 (732)
Q Consensus 412 vd~~~f~~~~~~ekr~~~r~~~R~~lg-----l~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i 486 (732)
+|.+.|.+....+ .+..+|+++| ++++.++|+++|++.+.||++.+++|+..+.++.++
T Consensus 230 vd~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~------------ 293 (499)
T 2r60_A 230 VNTRVFDGEYGDK----IKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDK------------ 293 (499)
T ss_dssp BCTTTSSSCCCHH----HHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHH------------
T ss_pred cChhhcCccchhh----hHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCC------------
Confidence 9999887754322 2366888888 888888999999999999999999999988665332
Q ss_pred ccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEecc
Q 004760 487 GRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKS 566 (732)
Q Consensus 487 ~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG 566 (732)
...++++|
T Consensus 294 ------------------------------------------------------------------------~~~l~i~G 301 (499)
T 2r60_A 294 ------------------------------------------------------------------------ANLVLTLR 301 (499)
T ss_dssp ------------------------------------------------------------------------CEEEEEES
T ss_pred ------------------------------------------------------------------------ceEEEEEC
Confidence 02456666
Q ss_pred C--chhhhhHhhhhhccCCC-CCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHc----CEEEEccCCCCCC
Q 004760 567 D--GKQQQALKILIGSVGSK-SNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAA----DVYVINSQGLGET 637 (732)
Q Consensus 567 ~--G~~~~~Lk~li~~~G~~-~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaA----Dv~V~pS~~~~Eg 637 (732)
. |+... ++.. ..+.+|.+++.+. .+.+++.++|+|+|++ +++..+|++| |++|+||. .|+
T Consensus 302 ~~~~~~~~--------y~~l~~~~~~y~~~l~~~-~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg 370 (499)
T 2r60_A 302 GIENPFED--------YSRAGQEEKEILGKIIEL-IDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF--YEP 370 (499)
T ss_dssp SCSBTTTB--------CTTSCHHHHHHHHHHHHH-HHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS--CBC
T ss_pred CCCCcccc--------cccccccchHHHHHHHHH-HHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc--cCC
Confidence 6 22000 0000 0001122333333 3445888999999986 8999999999 99999998 899
Q ss_pred CcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHH
Q 004760 638 FGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHM 717 (732)
Q Consensus 638 fg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~ 717 (732)
||++++||||||+|||+|+.||+.|++.++.+|++++++|+ ++|+++|..+++|++.+++|++++++.+.++|+|+.+
T Consensus 371 ~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~--~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 448 (499)
T 2r60_A 371 FGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDP--EDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQET 448 (499)
T ss_dssp CCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCH--HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHH
T ss_pred CCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999899999999888 9999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHhhcC
Q 004760 718 YKKLSQVIYKCMKP 731 (732)
Q Consensus 718 ~~~~~ev~~~~l~~ 731 (732)
++++.++|++++..
T Consensus 449 ~~~~~~~y~~~~~~ 462 (499)
T 2r60_A 449 ARGYLEVIQEIADR 462 (499)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998753
No 7
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=9.8e-35 Score=306.24 Aligned_cols=343 Identities=17% Similarity=0.208 Sum_probs=252.3
Q ss_pred eEEEEeCC-CCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch---------------hh
Q 004760 244 KFILIFHE-LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS---------------FK 307 (732)
Q Consensus 244 kIllI~h~-ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~---------------~~ 307 (732)
||++|++. ...||++..+.+||++|.+.||+|.+++....+... .+++++..+.... +.
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~l~~~i 76 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP-----KAFELIQVPVKSHTNHGRNAEYYAWVQNHL 76 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC-----TTCEEEECCCCCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCCC-----CCcEEEEEccCcccchhhHHHHHHHHHHHH
Confidence 68999887 467999999999999999999999999965444332 4788877665321 22
Q ss_pred hhcCccEEEeCCchhhHH--------HHHHHHhhcCCCccEEEEEeechhHhHHH-hhhhhc--cccEEEEecHHhHHHh
Q 004760 308 TSMKADLVIAGSAVCATW--------IDQYITRFPAGGSQVVWWIMENRREYFDR-AKLVLD--RVKLLVFLSESQTKQW 376 (732)
Q Consensus 308 ~~~k~DlVia~Sav~~~~--------i~~~i~~~~~~~~~ivw~i~e~r~~~~~~-~~~~l~--r~~~li~vS~~~~~~~ 376 (732)
+..+||+||+++...... ....+.+. .+... .. ..+...+.. .+..+. .++.++++|+......
T Consensus 77 ~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 151 (374)
T 2iw1_A 77 KEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQE-KGFLY---RL-TSRYRHYAAFERATFEQGKSTKLMMLTDKQIADF 151 (374)
T ss_dssp HHSCCSEEEESSCCTTCSEEECCSCCHHHHHHHH-CCHHH---HT-SHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHH
T ss_pred hccCCCEEEEecCCCCceeeeccccccceeeeec-ccchh---hh-cHHHHHHHHHHHHHhhccCCcEEEEcCHHHHHHH
Confidence 367999999886322110 00011000 00000 00 000011111 111122 4788999999875431
Q ss_pred hhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 004760 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (732)
Q Consensus 377 ~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~K 456 (732)
.. .++..+ ..+.+||||+|.+.|.+....+ .+..+|+++|++++.++|+++|++.+.|
T Consensus 152 ~~-------~~~~~~-----------~~~~vi~ngv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~G~~~~~K 209 (374)
T 2iw1_A 152 QK-------HYQTEP-----------ERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFGRK 209 (374)
T ss_dssp HH-------HHCCCG-----------GGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTTTT
T ss_pred HH-------HhCCCh-----------hheEEecCCcCHHhcCcccchh----HHHHHHHHhCCCCCCeEEEEeccchhhc
Confidence 11 123222 2358999999999887654321 2367899999999999999999999999
Q ss_pred CHHHHHHHHHHhHHh-CCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCccccc
Q 004760 457 GQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (732)
Q Consensus 457 G~d~LLeA~~~l~~~-~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n 535 (732)
|++.+++|+..+.++ .++
T Consensus 210 ~~~~li~a~~~l~~~~~~~------------------------------------------------------------- 228 (374)
T 2iw1_A 210 GVDRSIEALASLPESLRHN------------------------------------------------------------- 228 (374)
T ss_dssp THHHHHHHHHTSCHHHHHT-------------------------------------------------------------
T ss_pred CHHHHHHHHHHhHhccCCc-------------------------------------------------------------
Confidence 999999999987543 222
Q ss_pred CCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchh
Q 004760 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT 615 (732)
Q Consensus 536 ~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~ 615 (732)
.+++++|.|+. +.++.++ +.+++.++|.|+|+.+
T Consensus 229 ------------------------~~l~i~G~g~~-~~~~~~~---------------------~~~~~~~~v~~~g~~~ 262 (374)
T 2iw1_A 229 ------------------------TLLFVVGQDKP-RKFEALA---------------------EKLGVRSNVHFFSGRN 262 (374)
T ss_dssp ------------------------EEEEEESSSCC-HHHHHHH---------------------HHHTCGGGEEEESCCS
T ss_pred ------------------------eEEEEEcCCCH-HHHHHHH---------------------HHcCCCCcEEECCCcc
Confidence 35777888753 3333333 2337888999999999
Q ss_pred hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEEC-CCCCcHHHHHHHHHHHhcCH
Q 004760 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHP-PGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 616 dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~-~~d~~~e~La~aL~~LL~n~ 694 (732)
++..+|+.||++|+||. .|+||++++||||||+|||+++.+|..|+++++.+|++++ ++|+ ++|+++|..+++|+
T Consensus 263 ~~~~~~~~ad~~v~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~--~~l~~~i~~l~~~~ 338 (374)
T 2iw1_A 263 DVSELMAAADLLLHPAY--QEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQ--EQLNEVLRKALTQS 338 (374)
T ss_dssp CHHHHHHHCSEEEECCS--CCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCH--HHHHHHHHHHHHCH
T ss_pred cHHHHHHhcCEEEeccc--cCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCH--HHHHHHHHHHHcCh
Confidence 99999999999999998 8999999999999999999999999999999989999998 7777 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 695 SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 695 ~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
+.+++|++++++.+++ |+|..+.+++.++++.++.
T Consensus 339 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 339 PLRMAWAENARHYADT-QDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHHHHHHHH-SCCSCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhc
Confidence 9999999999999985 7999999999999987654
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=3e-34 Score=316.01 Aligned_cols=359 Identities=16% Similarity=0.152 Sum_probs=253.9
Q ss_pred eEEEEeCCC----CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH----------------------HhCCcEE
Q 004760 244 KFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL----------------------ARRKIKV 297 (732)
Q Consensus 244 kIllI~h~l----s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el----------------------~~~gI~v 297 (732)
||++|+++. ..||++..+.+||++|.+.||+|.|++....+ ....+ ...|+++
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 80 (485)
T 1rzu_A 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPA-VKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHH-HHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred eEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccccccceeEEEEEecCCeEEEEEEEecCceE
Confidence 799999987 47999999999999999999999999964321 11110 1367888
Q ss_pred EEcCCC----------c-----------------h-----hh----hhcCccEEEeCCchhhHHHHHHHHhhcCCCccEE
Q 004760 298 LEDRGE----------P-----------------S-----FK----TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVV 341 (732)
Q Consensus 298 ~~~~~~----------~-----------------~-----~~----~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~iv 341 (732)
+..+.. . . +. +..+||+||+|+.. ..++..++........+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~-~~~~~~~~~~~~~~~~p~v 159 (485)
T 1rzu_A 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQ-AAMTPVYMRYAETPEIPSL 159 (485)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHH-HTTHHHHHHHSSSCCCCEE
T ss_pred EEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccc-hhHHHHHHhhcccCCCCEE
Confidence 754210 0 0 11 25689999998632 2223233332211233477
Q ss_pred EEEeechh------H----------hH-----------HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCC-cc
Q 004760 342 WWIMENRR------E----------YF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQP-AV 393 (732)
Q Consensus 342 w~i~e~r~------~----------~~-----------~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~-~~ 393 (732)
+++|.... . ++ ...+..+..++.++++|+.......... ++... .+
T Consensus 160 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~------~g~~~~~~ 233 (485)
T 1rzu_A 160 LTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAE------FGMGLEGV 233 (485)
T ss_dssp EEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHH------HHTTCHHH
T ss_pred EEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhccc------cCcchHHH
Confidence 77765310 0 00 0112334558899999998644311100 01000 00
Q ss_pred ccccCCCccceEEeecCCCCCCCCCchhhH-----------HHhHHhHHHHHHHhCCCCC-CEEEEEEecCCCCCCHHHH
Q 004760 394 VPLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTDQ-DMLVLSLSSINPGKGQLLL 461 (732)
Q Consensus 394 v~l~~n~~~~~v~vIpngvd~~~f~~~~~~-----------ekr~~~r~~~R~~lgl~~~-~~lil~vGri~~~KG~d~L 461 (732)
... . ...+.+||||+|.+.|.+.... +.+...+..+|+++|++++ +++|+++|++.+.||++.+
T Consensus 234 ~~~--~--~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~l 309 (485)
T 1rzu_A 234 IGS--R--AHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLM 309 (485)
T ss_dssp HHT--T--GGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHH
T ss_pred HHh--h--cCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHHH
Confidence 000 0 1235899999999988765320 0011124678999999875 6799999999999999999
Q ss_pred HHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCc
Q 004760 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (732)
Q Consensus 462 LeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~l 541 (732)
++|+..+.+. +
T Consensus 310 i~a~~~l~~~--~------------------------------------------------------------------- 320 (485)
T 1rzu_A 310 AEAVDEIVSL--G------------------------------------------------------------------- 320 (485)
T ss_dssp HTTHHHHHHT--T-------------------------------------------------------------------
T ss_pred HHHHHHHHhc--C-------------------------------------------------------------------
Confidence 9999998652 2
Q ss_pred ccccCCCCccccCCcccceeEEeccCchh--hhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEE-Eccchhh-H
Q 004760 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQ--QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATTR-V 617 (732)
Q Consensus 542 f~~~~~~d~v~iG~~~~~~~LlivG~G~~--~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~-f~G~~~d-v 617 (732)
.+++++|+|+. .+.++.++ +.++ ++|. |.|+..+ +
T Consensus 321 ------------------~~l~ivG~g~~~~~~~l~~~~---------------------~~~~--~~v~~~~g~~~~~~ 359 (485)
T 1rzu_A 321 ------------------GRLVVLGAGDVALEGALLAAA---------------------SRHH--GRVGVAIGYNEPLS 359 (485)
T ss_dssp ------------------CEEEEEECBCHHHHHHHHHHH---------------------HHTT--TTEEEEESCCHHHH
T ss_pred ------------------ceEEEEeCCchHHHHHHHHHH---------------------HhCC--CcEEEecCCCHHHH
Confidence 25778888852 33333333 2223 6786 7898755 5
Q ss_pred HHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccC---------ceEEEECCCCCcHHHHHHHHH
Q 004760 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN---------VTGLLHPPGHPGAQVLAQNLR 688 (732)
Q Consensus 618 ~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g---------~~Gll~~~~d~~~e~La~aL~ 688 (732)
..+|++||++|+||. .|+||++++||||||+|||+|+.||+.|++.++ .+|++++++|+ ++|+++|.
T Consensus 360 ~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~--~~la~~i~ 435 (485)
T 1rzu_A 360 HLMQAGCDAIIIPSR--FEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTL--DGLKQAIR 435 (485)
T ss_dssp HHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSH--HHHHHHHH
T ss_pred HHHHhcCCEEEECcc--cCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCH--HHHHHHHH
Confidence 899999999999998 899999999999999999999999999999998 89999999888 99999999
Q ss_pred HHh---cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 689 YLL---KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 689 ~LL---~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
.++ +|++.+++|++++++ +.|+|+.+++++.++|++++..
T Consensus 436 ~ll~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~~~~~ 478 (485)
T 1rzu_A 436 RTVRYYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQLISK 478 (485)
T ss_dssp HHHHHHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhCCHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHHhhCC
Confidence 999 799999999999874 6899999999999999998864
No 9
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=6.5e-34 Score=306.10 Aligned_cols=347 Identities=17% Similarity=0.190 Sum_probs=247.8
Q ss_pred eEEEEeCCCC-CCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh-------hHHHhCCcEEEE-cCCC-c---hhhhhc
Q 004760 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-------PELARRKIKVLE-DRGE-P---SFKTSM 310 (732)
Q Consensus 244 kIllI~h~ls-~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~-------~el~~~gI~v~~-~~~~-~---~~~~~~ 310 (732)
||++|++... .||++.++.+||++|.+. |+|.+++....|... .......+..+. .... . ......
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLNEQGFYYSGLSEFIDVH 80 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHHTTCCSTTCCHHHHHHHHHHH
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccccccccccchHHHHHHHHHhc
Confidence 7888876554 589999999999999999 999999976654211 000000000000 0000 0 123467
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCC--CccEEEEEeechhHhHHHhhhhhcccc--EEEEecHHhHHHhhhHHHhhhhh
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAG--GSQVVWWIMENRREYFDRAKLVLDRVK--LLVFLSESQTKQWLTWCEEEKLK 386 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~--~~~ivw~i~e~r~~~~~~~~~~l~r~~--~li~vS~~~~~~~~~~~~~e~i~ 386 (732)
+||+||+++... +....+.....- ...++...+.............+.+.+ .++++|+...+. + .+
T Consensus 81 ~~Div~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~----~----~~ 150 (413)
T 3oy2_A 81 KPDIVMIYNDPI--VIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISD----I----CN 150 (413)
T ss_dssp CCSEEEEEECHH--HHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTTEEEEEESSTHHHHH----H----HH
T ss_pred CCCEEEEcchHH--HHHHHHHHhccCCCCCceeeeccccchhhHHHHHHHHhccCCceEEEcCHHHHHH----H----HH
Confidence 999999984322 122222222211 122333333211111111244556655 999999987543 2 12
Q ss_pred ccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHHHH
Q 004760 387 LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVES 464 (732)
Q Consensus 387 l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~--~~~lil~vGri~~~KG~d~LLeA 464 (732)
++. + ..+.+||||+|.+.|. ..|+.+++++ +.++|+++|++.+.||++.+++|
T Consensus 151 ~~~-~-----------~~~~vi~ngvd~~~~~-------------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a 205 (413)
T 3oy2_A 151 YGC-K-----------VPINIVSHFVDTKTIY-------------DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLA 205 (413)
T ss_dssp TTC-C-----------SCEEECCCCCCCCCCT-------------THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHH
T ss_pred cCC-C-----------CceEEeCCCCCHHHHH-------------HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHH
Confidence 222 1 1358999999999881 1356788887 88999999999999999999999
Q ss_pred HHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccc
Q 004760 465 AQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTS 544 (732)
Q Consensus 465 ~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~ 544 (732)
+..+.++.++
T Consensus 206 ~~~l~~~~~~---------------------------------------------------------------------- 215 (413)
T 3oy2_A 206 AARFISKYPD---------------------------------------------------------------------- 215 (413)
T ss_dssp HHHHHHHCTT----------------------------------------------------------------------
T ss_pred HHHHHHhCCC----------------------------------------------------------------------
Confidence 9999888776
Q ss_pred cCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCc-------EEEccch--h
Q 004760 545 IGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKA-------MLWTPAT--T 615 (732)
Q Consensus 545 ~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~-------V~f~G~~--~ 615 (732)
.+++++|+|+.... ..+.+.++.+.+.+++.++ |.|+|+. +
T Consensus 216 ---------------~~l~ivG~g~~~~~---------------~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~ 265 (413)
T 3oy2_A 216 ---------------AKVRFLCNSHHESK---------------FDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDE 265 (413)
T ss_dssp ---------------CCEEEEEECCTTCS---------------CCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHH
T ss_pred ---------------cEEEEEeCCcccch---------------hhHHHHHHHHHHHcCcccccccccceeeccCcCCHH
Confidence 24667777754310 0111222333344488876 8888985 6
Q ss_pred hHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCce---------------EE--EECCCCC
Q 004760 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVT---------------GL--LHPPGHP 678 (732)
Q Consensus 616 dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~---------------Gl--l~~~~d~ 678 (732)
++..+|++||++|+||. .|+||++++||||||+|||+|+.||+.|++.++.+ |+ +++++|+
T Consensus 266 ~~~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~ 343 (413)
T 3oy2_A 266 RVDMMYNACDVIVNCSS--GEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDV 343 (413)
T ss_dssp HHHHHHHHCSEEEECCS--CCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCH
T ss_pred HHHHHHHhCCEEEeCCC--cCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCH
Confidence 89999999999999998 99999999999999999999999999999998877 88 9998888
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
++|+++| .+++|++.+++|++++++.+.+.|+|+.+++++.++|++++..
T Consensus 344 --~~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 393 (413)
T 3oy2_A 344 --DDLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRV 393 (413)
T ss_dssp --HHHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC-
T ss_pred --HHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 9999999 9999999999999999999988999999999999999998864
No 10
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.3e-33 Score=310.94 Aligned_cols=359 Identities=14% Similarity=0.134 Sum_probs=252.5
Q ss_pred eEEEEeCCC----CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH---------------------HhCCcEEE
Q 004760 244 KFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL---------------------ARRKIKVL 298 (732)
Q Consensus 244 kIllI~h~l----s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el---------------------~~~gI~v~ 298 (732)
||++|+++. ..||++.++.+||++|.+.||+|.|++....+ ....+ ...|++++
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPD-IRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHH-HHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred eEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccc-cccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 799999987 47999999999999999999999999964321 11111 02578876
Q ss_pred EcCC----------C-------------c------h---hhh----hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEE
Q 004760 299 EDRG----------E-------------P------S---FKT----SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVW 342 (732)
Q Consensus 299 ~~~~----------~-------------~------~---~~~----~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw 342 (732)
..+. . . . +.+ ..+||+||+|+... .++..++.....+ .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~-~~~~~~~~~~~~~-~p~v~ 158 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHA-GLAPAYLAARGRP-AKSVF 158 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGG-TTHHHHHHHTTCS-SEEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccch-hHHHHHHhhccCC-CCEEE
Confidence 5421 0 0 0 111 26899999997443 2233333322333 44777
Q ss_pred EEeechhH------hH---------------------HHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCC-ccc
Q 004760 343 WIMENRRE------YF---------------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQP-AVV 394 (732)
Q Consensus 343 ~i~e~r~~------~~---------------------~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~-~~v 394 (732)
++|..... .+ ...+..+..++.++++|+..... ..+.. ++... .+.
T Consensus 159 t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~----~~~~~--~~~~~~~~~ 232 (485)
T 2qzs_A 159 TVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE----ITEPQ--FAYGMEGLL 232 (485)
T ss_dssp EESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHH----TTSHH--HHTTCHHHH
T ss_pred EecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHH----Hhccc--cCcchHHHH
Confidence 77653100 00 01122344588999999986442 10000 11100 000
Q ss_pred cccCCCccceEEeecCCCCCCCCCchhhH-----------HHhHHhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHH
Q 004760 395 PLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLL 461 (732)
Q Consensus 395 ~l~~n~~~~~v~vIpngvd~~~f~~~~~~-----------ekr~~~r~~~R~~lgl~~--~~~lil~vGri~~~KG~d~L 461 (732)
..... ...+.+||||+|.+.|.+.... +.+...+..+|+++|+++ +.++|+++|++.+.||++.+
T Consensus 233 ~~~~~--~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~l 310 (485)
T 2qzs_A 233 QQRHR--EGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLV 310 (485)
T ss_dssp HHHHH--TTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHH
T ss_pred Hhhcc--CCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHH
Confidence 00000 0235899999999988764310 001113467899999986 67899999999999999999
Q ss_pred HHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCc
Q 004760 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (732)
Q Consensus 462 LeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~l 541 (732)
++|++.+.+. +
T Consensus 311 i~a~~~l~~~--~------------------------------------------------------------------- 321 (485)
T 2qzs_A 311 LEALPGLLEQ--G------------------------------------------------------------------- 321 (485)
T ss_dssp HHHHHHHHHT--T-------------------------------------------------------------------
T ss_pred HHHHHHHhhC--C-------------------------------------------------------------------
Confidence 9999998652 2
Q ss_pred ccccCCCCccccCCcccceeEEeccCch--hhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEE-Eccchhh-H
Q 004760 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGK--QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATTR-V 617 (732)
Q Consensus 542 f~~~~~~d~v~iG~~~~~~~LlivG~G~--~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~-f~G~~~d-v 617 (732)
.+++++|+|+ ..+.++.++ +.++ ++|. |+|+..+ +
T Consensus 322 ------------------~~l~ivG~g~~~~~~~l~~~~---------------------~~~~--~~v~~~~g~~~~~~ 360 (485)
T 2qzs_A 322 ------------------GQLALLGAGDPVLQEGFLAAA---------------------AEYP--GQVGVQIGYHEAFS 360 (485)
T ss_dssp ------------------CEEEEEEEECHHHHHHHHHHH---------------------HHST--TTEEEEESCCHHHH
T ss_pred ------------------cEEEEEeCCchHHHHHHHHHH---------------------HhCC--CcEEEeCCCCHHHH
Confidence 2577888875 233333333 2223 6785 8898754 5
Q ss_pred HHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccC---------ceEEEECCCCCcHHHHHHHHH
Q 004760 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN---------VTGLLHPPGHPGAQVLAQNLR 688 (732)
Q Consensus 618 ~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g---------~~Gll~~~~d~~~e~La~aL~ 688 (732)
..+|++||++|+||. .|+||++++||||||+|||+|+.||+.|++.++ .+|++++++|+ ++|+++|.
T Consensus 361 ~~~~~~adv~v~pS~--~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~--~~la~~i~ 436 (485)
T 2qzs_A 361 HRIMGGADVILVPSR--FEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA--WSLLRAIR 436 (485)
T ss_dssp HHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSH--HHHHHHHH
T ss_pred HHHHHhCCEEEECCc--cCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCH--HHHHHHHH
Confidence 899999999999998 999999999999999999999999999999998 89999999988 99999999
Q ss_pred HHh---cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 689 YLL---KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 689 ~LL---~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
.++ +|++.+++|++++++ +.|+|+.++++|.++|+++..
T Consensus 437 ~ll~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~~~~ 478 (485)
T 2qzs_A 437 RAFVLWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYRLKL 478 (485)
T ss_dssp HHHHHHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHHhhh
Confidence 999 799999999999874 689999999999999998865
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.1e-32 Score=293.76 Aligned_cols=340 Identities=17% Similarity=0.204 Sum_probs=247.6
Q ss_pred CCeEEEEeCCC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCC-------------ch-
Q 004760 242 SRKFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE-------------PS- 305 (732)
Q Consensus 242 ~~kIllI~h~l--s~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~-------------~~- 305 (732)
+.||++|++.. ..||++..+.+||++|.+.||+|.+++........+.+.....+++..+.. ..
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPATHRKV 99 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCHHHHHHH
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHHHHHHH
Confidence 35899999875 349999999999999999999999999654432111111111122222110 01
Q ss_pred --hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH--hHHH----hhhhhccccEEEEecHHhHHHhh
Q 004760 306 --FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE--YFDR----AKLVLDRVKLLVFLSESQTKQWL 377 (732)
Q Consensus 306 --~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~--~~~~----~~~~l~r~~~li~vS~~~~~~~~ 377 (732)
+.+..+||+||+++.....+ .++.....+. ++++++|..... .... ....+.+++.++++|+.....
T Consensus 100 ~~~l~~~~~Dii~~~~~~~~~~--~~~~~~~~~~-~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-- 174 (406)
T 2gek_A 100 KKWIAEGDFDVLHIHEPNAPSL--SMLALQAAEG-PIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARRW-- 174 (406)
T ss_dssp HHHHHHHCCSEEEEECCCSSSH--HHHHHHHEES-SEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHHHH--
T ss_pred HHHHHhcCCCEEEECCccchHH--HHHHHHhcCC-CEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHHHH--
Confidence 23366999999987654433 2222222233 467777653211 1111 113445689999999886443
Q ss_pred hHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecC-CCCC
Q 004760 378 TWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSI-NPGK 456 (732)
Q Consensus 378 ~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri-~~~K 456 (732)
+. + .+.. ..+ +||||+|.+.|.+... ..+++.+.+.|+++|++ .+.|
T Consensus 175 --~~----~-~~~~-----------~~~-vi~~~v~~~~~~~~~~-------------~~~~~~~~~~i~~~G~~~~~~K 222 (406)
T 2gek_A 175 --QM----E-ALGS-----------DAV-EIPNGVDVASFADAPL-------------LDGYPREGRTVLFLGRYDEPRK 222 (406)
T ss_dssp --HH----H-HHSS-----------CEE-ECCCCBCHHHHHTCCC-------------CTTCSCSSCEEEEESCTTSGGG
T ss_pred --HH----H-hcCC-----------CcE-EecCCCChhhcCCCch-------------hhhccCCCeEEEEEeeeCcccc
Confidence 21 1 1111 135 8999998765543321 11233456789999999 9999
Q ss_pred CHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccC
Q 004760 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (732)
Q Consensus 457 G~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~ 536 (732)
|++.+++|+..+.++.++
T Consensus 223 g~~~li~a~~~l~~~~~~-------------------------------------------------------------- 240 (406)
T 2gek_A 223 GMAVLLAALPKLVARFPD-------------------------------------------------------------- 240 (406)
T ss_dssp CHHHHHHHHHHHHTTSTT--------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCCC--------------------------------------------------------------
Confidence 999999999999776554
Q ss_pred CCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--
Q 004760 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT-- 614 (732)
Q Consensus 537 ~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~-- 614 (732)
.+++++|.|+. +.++.++. . +.++|.|+|++
T Consensus 241 -----------------------~~l~i~G~~~~-~~l~~~~~---------------------~--~~~~v~~~g~~~~ 273 (406)
T 2gek_A 241 -----------------------VEILIVGRGDE-DELREQAG---------------------D--LAGHLRFLGQVDD 273 (406)
T ss_dssp -----------------------CEEEEESCSCH-HHHHHHTG---------------------G--GGGGEEECCSCCH
T ss_pred -----------------------eEEEEEcCCcH-HHHHHHHH---------------------h--ccCcEEEEecCCH
Confidence 35778888876 55555542 1 25789999988
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCH
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~ 694 (732)
+++..+|+.||++|+||.+ .|+||++++|||+||+|||+++.||..|++.++.+|++++++|+ ++|+++|.++++|+
T Consensus 274 ~~~~~~~~~adv~v~ps~~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~--~~l~~~i~~l~~~~ 350 (406)
T 2gek_A 274 ATKASAMRSADVYCAPHLG-GESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDA--DGMAAALIGILEDD 350 (406)
T ss_dssp HHHHHHHHHSSEEEECCCS-CCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCH--HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHCCEEEecCCC-CCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCH--HHHHHHHHHHHcCH
Confidence 5679999999999999842 89999999999999999999999999999999999999998888 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 695 SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 695 ~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
+.+.+|++++++.++ .|+|+.+++++.++|++++..
T Consensus 351 ~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 386 (406)
T 2gek_A 351 QLRAGYVARASERVH-RYDWSVVSAQIMRVYETVSGA 386 (406)
T ss_dssp HHHHHHHHHHHHHGG-GGBHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999998 899999999999999998764
No 12
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=3.6e-32 Score=285.74 Aligned_cols=308 Identities=17% Similarity=0.139 Sum_probs=233.6
Q ss_pred ccCCeEEEEeCC--------------CCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch
Q 004760 240 VWSRKFILIFHE--------------LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS 305 (732)
Q Consensus 240 ~~~~kIllI~h~--------------ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~ 305 (732)
|.+.||++|++. ...||++..+.+||++|.+.||+|.+++....... ..+++++.......
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~-----~~~~~~~~~~~~~~ 75 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG-----RPGLTVVPAGEPEE 75 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC-----STTEEECSCCSHHH
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC-----CCcceeccCCcHHH
Confidence 456799999998 25699999999999999999999999985443321 25666665443222
Q ss_pred ---hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhhHHHh
Q 004760 306 ---FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (732)
Q Consensus 306 ---~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~ 382 (732)
+.+..+||+||+++.....+ .....+.+ ++++|...... ...+.++++|+..... +
T Consensus 76 l~~~l~~~~~Dvi~~~~~~~~~~-----~~~~~~~p--v~~~h~~~~~~--------~~~d~ii~~S~~~~~~----~-- 134 (342)
T 2iuy_A 76 IERWLRTADVDVVHDHSGGVIGP-----AGLPPGTA--FISSHHFTTRP--------VNPVGCTYSSRAQRAH----C-- 134 (342)
T ss_dssp HHHHHHHCCCSEEEECSSSSSCS-----TTCCTTCE--EEEEECSSSBC--------SCCTTEEESCHHHHHH----T--
T ss_pred HHHHHHhcCCCEEEECCchhhHH-----HHhhcCCC--EEEecCCCCCc--------ccceEEEEcCHHHHHH----H--
Confidence 33467999999997553221 12233445 66776543211 1166799999986442 2
Q ss_pred hhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 004760 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (732)
Q Consensus 383 e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LL 462 (732)
.. . .+. .+||||+|.+.|.+... .. .++..|+++|++.+.||++.++
T Consensus 135 ---~~---~-------~~~----~vi~ngvd~~~~~~~~~---------------~~-~~~~~i~~vG~~~~~Kg~~~li 181 (342)
T 2iuy_A 135 ---GG---G-------DDA----PVIPIPVDPARYRSAAD---------------QV-AKEDFLLFMGRVSPHKGALEAA 181 (342)
T ss_dssp ---TC---C-------TTS----CBCCCCBCGGGSCCSTT---------------CC-CCCSCEEEESCCCGGGTHHHHH
T ss_pred ---hc---C-------Cce----EEEcCCCChhhcCcccc---------------cC-CCCCEEEEEeccccccCHHHHH
Confidence 11 1 222 79999999988865432 11 2445799999999999999999
Q ss_pred HHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcc
Q 004760 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (732)
Q Consensus 463 eA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf 542 (732)
+|++.+ +
T Consensus 182 ~a~~~~-----~-------------------------------------------------------------------- 188 (342)
T 2iuy_A 182 AFAHAC-----G-------------------------------------------------------------------- 188 (342)
T ss_dssp HHHHHH-----T--------------------------------------------------------------------
T ss_pred HHHHhc-----C--------------------------------------------------------------------
Confidence 999876 2
Q ss_pred cccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchh--hHHHH
Q 004760 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASL 620 (732)
Q Consensus 543 ~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~--dv~~l 620 (732)
.+++++|+|+..+.++.++. .++ ++|+|+|+++ ++.++
T Consensus 189 -----------------~~l~i~G~g~~~~~l~~~~~---------------------~~~--~~v~~~g~~~~~~l~~~ 228 (342)
T 2iuy_A 189 -----------------RRLVLAGPAWEPEYFDEITR---------------------RYG--STVEPIGEVGGERRLDL 228 (342)
T ss_dssp -----------------CCEEEESCCCCHHHHHHHHH---------------------HHT--TTEEECCCCCHHHHHHH
T ss_pred -----------------cEEEEEeCcccHHHHHHHHH---------------------HhC--CCEEEeccCCHHHHHHH
Confidence 14677888876555554442 124 6899999884 56999
Q ss_pred HHHcCEEEEccC---------CCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--CceEEEECCCCCcHHHHHHHHHH
Q 004760 621 YSAADVYVINSQ---------GLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHPPGHPGAQVLAQNLRY 689 (732)
Q Consensus 621 ysaADv~V~pS~---------~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~--g~~Gll~~~~d~~~e~La~aL~~ 689 (732)
|++||++|+||. + .|+||++++||||||+|||+|+.||+.|++++ +.+|+++++ |. ++|+++|.+
T Consensus 229 ~~~adv~v~ps~~~~~~~~~~~-~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~--~~l~~~i~~ 304 (342)
T 2iuy_A 229 LASAHAVLAMSQAVTGPWGGIW-CEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-AP--DEARRTLAG 304 (342)
T ss_dssp HHHCSEEEECCCCCCCTTCSCC-CCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CH--HHHHHHHHT
T ss_pred HHhCCEEEECCccccccccccc-ccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CH--HHHHHHHHH
Confidence 999999999996 3 79999999999999999999999999999999 899999998 87 999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 004760 690 LLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMKP 731 (732)
Q Consensus 690 LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~~ 731 (732)
+++ ++++++.+.++|+|+.+++++.++|++++..
T Consensus 305 l~~--------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 305 LPA--------SDEVRRAAVRLWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp SCC--------HHHHHHHHHHHHBHHHHHHHHHHHHHHHHTT
T ss_pred HHH--------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHcc
Confidence 987 6678888888899999999999999998764
No 13
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.98 E-value=4.2e-31 Score=300.48 Aligned_cols=211 Identities=18% Similarity=0.247 Sum_probs=163.9
Q ss_pred eEEeecCCCCCCCCCchh------------hHHHhHHhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHHHHHHHhH
Q 004760 404 FVAGFTCSLNTPTSSPEK------------MREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVESAQLMI 469 (732)
Q Consensus 404 ~v~vIpngvd~~~f~~~~------------~~ekr~~~r~~~R~~lgl~~--~~~lil~vGri~~~KG~d~LLeA~~~l~ 469 (732)
.+.+|+||+|++.|.|.. ..+.+...+..+++++|++. +.++|+++||+.++||++.|++|+..+.
T Consensus 274 ~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~ 353 (536)
T 3vue_A 274 GITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELM 353 (536)
T ss_dssp SCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHT
T ss_pred CeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhH
Confidence 458999999999988742 12233446678899999864 5689999999999999999999999885
Q ss_pred HhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCC
Q 004760 470 EQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTD 549 (732)
Q Consensus 470 ~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d 549 (732)
++.
T Consensus 354 ~~~----------------------------------------------------------------------------- 356 (536)
T 3vue_A 354 QED----------------------------------------------------------------------------- 356 (536)
T ss_dssp TSS-----------------------------------------------------------------------------
T ss_pred hhC-----------------------------------------------------------------------------
Confidence 432
Q ss_pred ccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEE
Q 004760 550 AVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVY 627 (732)
Q Consensus 550 ~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~ 627 (732)
.+++++|.|+...... ++.+.. ++..+|.+.+.. +++..+|++||+|
T Consensus 357 ----------~~l~l~G~G~~~~~~~-------------------~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~aD~~ 405 (536)
T 3vue_A 357 ----------VQIVLLGTGKKKFEKL-------------------LKSMEE--KYPGKVRAVVKFNAPLAHLIMAGADVL 405 (536)
T ss_dssp ----------CEEEEECCBCHHHHHH-------------------HHHHHH--HSTTTEEEECSCCHHHHHHHHHHCSEE
T ss_pred ----------CeEEEEeccCchHHHH-------------------HHHHHh--hcCCceEEEEeccHHHHHHHHHhhhee
Confidence 2456667664322111 111112 334677777644 6788999999999
Q ss_pred EEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEE----------CCCCCcHHHHHHHHHHHhc--CHH
Q 004760 628 VINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLH----------PPGHPGAQVLAQNLRYLLK--NPS 695 (732)
Q Consensus 628 V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~----------~~~d~~~e~La~aL~~LL~--n~~ 695 (732)
|+||. .|+||++++|||+||+|||+|++||++|+|.++.+|+.+ ++.|+ ++|+++|.++++ +..
T Consensus 406 v~PS~--~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~--~~la~ai~ral~~~~~~ 481 (536)
T 3vue_A 406 AVPSR--FEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDV--KKVAATLKRAIKVVGTP 481 (536)
T ss_dssp EECCS--CCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHH--HHHHHHHHHHHHHTTSH
T ss_pred ecccc--cCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCH--HHHHHHHHHHHHhcCcH
Confidence 99998 999999999999999999999999999999999999954 44444 999999988765 445
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 696 VRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 696 ~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
.+++|++++. ++.|||++++++|.++|+++.
T Consensus 482 ~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 482 AYEEMVRNCM---NQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHH---HSCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHHhh
Confidence 5777777664 467999999999999999864
No 14
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.97 E-value=2.4e-30 Score=306.80 Aligned_cols=421 Identities=13% Similarity=0.171 Sum_probs=267.4
Q ss_pred ceeeccCCcchhhhcccCc-----ccccccccccchhhhhccCCeEEEEeCCCC-----------CCcHHHHHH------
Q 004760 205 GLLVGPFGLTEDRILEWSP-----EKRSGTCDRKGDFARFVWSRKFILIFHELS-----------MTGAPLSMM------ 262 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~kIllI~h~ls-----------~gGA~~~~~------ 262 (732)
|+--| +|.+-.|++|.=- -+.-..|.=..=+++.=+..+|++|+.-.. .||-...++
T Consensus 237 ~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al 315 (816)
T 3s28_A 237 GLERG-WGDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRAL 315 (816)
T ss_dssp TBCBC-SCSBHHHHHHHHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHH
T ss_pred CCCCC-cCCcHHHHHHHHHHHHHHhcCCCcccHHHHhccCCceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHH
Confidence 44444 6666666665310 001112222333445556788999986553 566688888
Q ss_pred --HHHHHHHHCCCEEE----EEEeCCCCC----ChhH---HH-hCCcEEEEcCCCch-------------------hh--
Q 004760 263 --ELATELLSCGATVS----AVVLSKRGG----LMPE---LA-RRKIKVLEDRGEPS-------------------FK-- 307 (732)
Q Consensus 263 --eLA~~L~~~G~~V~----vv~l~~~g~----l~~e---l~-~~gI~v~~~~~~~~-------------------~~-- 307 (732)
+||++|+++||+|+ ++|-.-... +.+. +. ..|+.|+..+.... |.
T Consensus 316 ~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~ 395 (816)
T 3s28_A 316 EIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTED 395 (816)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHH
Confidence 57778888999886 666332111 1111 11 24778876653320 11
Q ss_pred ------h--hcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhH----------hHH----------Hhhhhh
Q 004760 308 ------T--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE----------YFD----------RAKLVL 359 (732)
Q Consensus 308 ------~--~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~----------~~~----------~~~~~l 359 (732)
. ..+||+||+|.... .++ ..+.....+.+ +++.+|..... .+. .....+
T Consensus 396 ~l~~il~~~~~~PDVIHsH~~~s-glv-a~llar~~gvP-~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l 472 (816)
T 3s28_A 396 AAVELSKELNGKPDLIIGNYSDG-NLV-ASLLAHKLGVT-QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAM 472 (816)
T ss_dssp HHHHHHHHCSSCCSEEEEEHHHH-HHH-HHHHHHHHTCC-EEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEeCCchH-HHH-HHHHHHHcCCC-EEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 1 34799999885332 222 22333334555 55666532110 000 011245
Q ss_pred ccccEEEEecHHhHHHhhhHHHhhhhhccC-CCc--cccccCCCccceEEeecCCCCCCCCCchhhHHHh-HHhH-----
Q 004760 360 DRVKLLVFLSESQTKQWLTWCEEEKLKLRS-QPA--VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKR-NLLR----- 430 (732)
Q Consensus 360 ~r~~~li~vS~~~~~~~~~~~~~e~i~l~~-~~~--~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr-~~~r----- 430 (732)
..++.++++|+.....-...+.......+. .|. .+.-+.+.....+.+||||+|...|.|....+++ ....
T Consensus 473 ~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~ 552 (816)
T 3s28_A 473 NHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEE 552 (816)
T ss_dssp HHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHH
T ss_pred HhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccc
Confidence 668999999988643100000000000000 000 0000000011156999999999999876432210 0000
Q ss_pred -----HHHHHHhCC--CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccc
Q 004760 431 -----DSVRKEMGL--TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRG 503 (732)
Q Consensus 431 -----~~~R~~lgl--~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ 503 (732)
...++.+|+ +.+.++|+++|++.+.||++.+++|+..+.+..++
T Consensus 553 ~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~----------------------------- 603 (816)
T 3s28_A 553 LLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLREL----------------------------- 603 (816)
T ss_dssp HHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHH-----------------------------
T ss_pred cccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCC-----------------------------
Confidence 123456677 67788999999999999999999999998765443
Q ss_pred cccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCC
Q 004760 504 LLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGS 583 (732)
Q Consensus 504 ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~ 583 (732)
.+++++|+|+.... .
T Consensus 604 --------------------------------------------------------v~LvIvG~g~~~~~---------~ 618 (816)
T 3s28_A 604 --------------------------------------------------------ANLVVVGGDRRKES---------K 618 (816)
T ss_dssp --------------------------------------------------------CEEEEECCCTTSCC---------C
T ss_pred --------------------------------------------------------eEEEEEeCCCcccc---------c
Confidence 35777888762000 0
Q ss_pred CCCChhhHHHHHHHHHhcCCCCCcEEEccch------hhHHHHHH-HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC
Q 004760 584 KSNKVPYVKEILEFLSQHSNLSKAMLWTPAT------TRVASLYS-AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (732)
Q Consensus 584 ~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~------~dv~~lys-aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td 656 (732)
...+..+..++. .+.+.+++.++|.|+|++ +++..+|+ +||++|+||. .|+||++++||||||+|||+|+
T Consensus 619 ~~e~~~~~~~L~-~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~--~EgfglvllEAMA~G~PVIasd 695 (816)
T 3s28_A 619 DNEEKAEMKKMY-DLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATC 695 (816)
T ss_dssp CHHHHHHHHHHH-HHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCS--CBSSCHHHHHHHHTTCCEEEES
T ss_pred chhhHHHHHHHH-HHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCC--ccCccHHHHHHHHcCCCEEEeC
Confidence 000011223333 333445899999999953 56888888 6899999998 9999999999999999999999
Q ss_pred CCChhhhhccCceEEEECCCCCcHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 657 AGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL----KNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 657 ~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL----~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
.||+.|++.++.+|++++++|+ ++|+++|..++ .|++.+++|++++++.+.++|+|+.+++++.++|+..
T Consensus 696 ~GG~~EiV~dg~~Gllv~p~D~--e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 696 KGGPAEIIVHGKSGFHIDPYHG--DQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp SBTHHHHCCBTTTBEEECTTSH--HHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHccCCcEEEeCCCCH--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 99999997766 8999999999999999988999999999999999865
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.95 E-value=3e-28 Score=267.96 Aligned_cols=332 Identities=12% Similarity=0.094 Sum_probs=210.8
Q ss_pred CeEEEEeCCCCCC---cHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh-CCcEEEEcCCC--------------c
Q 004760 243 RKFILIFHELSMT---GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR-RKIKVLEDRGE--------------P 304 (732)
Q Consensus 243 ~kIllI~h~ls~g---GA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~-~gI~v~~~~~~--------------~ 304 (732)
.||+++++.+..+ |+...+.+||++|.++||+|.|++...... .+...+ .+......... .
T Consensus 47 mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (413)
T 2x0d_A 47 KRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPN-PKDLQSFKSFKYVMPEEDKDFALQIVPFNDRYN 125 (413)
T ss_dssp CEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCC-HHHHGGGTTSEECCTTCCCCCSEEEEECSCCTT
T ss_pred ceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCC-hHHHHhhhccceeeccCCccccceeeecccccc
Confidence 7999999999864 777889999999999999999999643221 111111 12222111100 0
Q ss_pred hhhhhcCccEEEeCCchhhHHHHHHH---Hh-hcCCCccEEEEEeechhHhH------HHhhhhhcccc--EEEEecHHh
Q 004760 305 SFKTSMKADLVIAGSAVCATWIDQYI---TR-FPAGGSQVVWWIMENRREYF------DRAKLVLDRVK--LLVFLSESQ 372 (732)
Q Consensus 305 ~~~~~~k~DlVia~Sav~~~~i~~~i---~~-~~~~~~~ivw~i~e~r~~~~------~~~~~~l~r~~--~li~vS~~~ 372 (732)
......++|+||+++...+....... .+ ......+.++.++.....+. ......+.... .+++.|+..
T Consensus 126 ~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~~ 205 (413)
T 2x0d_A 126 RTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSELL 205 (413)
T ss_dssp CCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEEESHHH
T ss_pred ccccCCCCCEEEEehHHHHHHHHHhhhhhhhhcccccCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEEcCHHH
Confidence 00113479999988633222111111 01 11112234554433211111 01112222222 477888886
Q ss_pred HHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecC
Q 004760 373 TKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSI 452 (732)
Q Consensus 373 ~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri 452 (732)
... . .+.++.. . .+.+||||+|.+.|.+.. .+ ..++..++++||+
T Consensus 206 ~~~----l----~~~g~~~-------~----~~~~i~~g~d~~~~~~~~---------------~~-~~~~~~il~~gr~ 250 (413)
T 2x0d_A 206 KQY----F----NNKGYNF-------T----DEYFFQPKINTTLKNYIN---------------DK-RQKEKIILVYGRP 250 (413)
T ss_dssp HHH----H----HHHTCCC-------S----EEEEECCCCCHHHHTTTT---------------SC-CCCCSEEEEEECT
T ss_pred HHH----H----HHcCCCC-------C----ceEEeCCCcCchhhcccc---------------cc-cCCCCEEEEEecC
Confidence 442 2 1123321 1 247899999865432210 11 2344577889996
Q ss_pred -CCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCc
Q 004760 453 -NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (732)
Q Consensus 453 -~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P 531 (732)
.+.||++.+|+|++.+.++.|+.
T Consensus 251 ~~~~Kg~~~li~A~~~l~~~~~~~-------------------------------------------------------- 274 (413)
T 2x0d_A 251 SVKRNAFTLIVEALKIFVQKYDRS-------------------------------------------------------- 274 (413)
T ss_dssp TCGGGCHHHHHHHHHHHHHHCTTG--------------------------------------------------------
T ss_pred chhccCHHHHHHHHHHHHHhCCCC--------------------------------------------------------
Confidence 68999999999999998776530
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEc
Q 004760 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT 611 (732)
Q Consensus 532 ~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~ 611 (732)
...+++++|+|+... .+++.++|+|+
T Consensus 275 --------------------------~~~~l~ivG~~~~~~----------------------------~l~~~~~v~f~ 300 (413)
T 2x0d_A 275 --------------------------NEWKIISVGEKHKDI----------------------------ALGKGIHLNSL 300 (413)
T ss_dssp --------------------------GGCEEEEEESCCCCE----------------------------EEETTEEEEEE
T ss_pred --------------------------CceEEEEEcCCchhh----------------------------hcCCcCcEEEc
Confidence 013577778775431 12556789999
Q ss_pred cch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHH
Q 004760 612 PAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (732)
Q Consensus 612 G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~ 689 (732)
|++ +++..+|++||+||+||. .|+||++++||||||+|||++ .+|..|+++++.+|++++++|+ ++||++|..
T Consensus 301 G~~~~~~l~~~~~~adv~v~pS~--~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv~~~d~--~~la~ai~~ 375 (413)
T 2x0d_A 301 GKLTLEDYADLLKRSSIGISLMI--SPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSLEQLNP--ENIAETLVE 375 (413)
T ss_dssp ESCCHHHHHHHHHHCCEEECCCS--SSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEESSCSH--HHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCEEEEecC--CCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEeCCCCH--HHHHHHHHH
Confidence 975 799999999999999997 899999999999999999995 4667899999999999999998 999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 690 LLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 690 LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
+++|++.+++ ++++.++ .|+|+.+.++ .+.|+++..
T Consensus 376 ll~~~~~~~~---~~~~~~~-~~~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 376 LCMSFNNRDV---DKKESSN-MMFYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp HHHHTC----------CCBS-CGGGCCCC----TTHHHHHT
T ss_pred HHcCHHHHHH---hHHHHHH-hCCHHHHHHH-HHHHHHHHh
Confidence 9999988777 5665554 6999999877 666666543
No 16
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.95 E-value=4.3e-28 Score=272.56 Aligned_cols=328 Identities=11% Similarity=0.077 Sum_probs=230.1
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHH--HHHCCCEEEEEEeCCC--CCChhHHHhCCcEEEEcCCCch-----hhhhcCc
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATE--LLSCGATVSAVVLSKR--GGLMPELARRKIKVLEDRGEPS-----FKTSMKA 312 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~--L~~~G~~V~vv~l~~~--g~l~~el~~~gI~v~~~~~~~~-----~~~~~k~ 312 (732)
+.||+++++.+..+|++..+++|++. |.+.|++|.+++.... +.+..++...+ .+........ +.++.+|
T Consensus 205 ~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~ 283 (568)
T 2vsy_A 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVTALGHLATAKHIRHHGI 283 (568)
T ss_dssp CEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECTTCCHHHHHHHHHHTTC
T ss_pred CeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECCCCCHHHHHHHHHhCCC
Confidence 46899999999999999999999999 7889999999985432 33455666666 6554433211 3447899
Q ss_pred cEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCc
Q 004760 313 DLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPA 392 (732)
Q Consensus 313 DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~ 392 (732)
|+||.++..........+++... + +++..+..... ..+...+..+ +. ..++.++.... +
T Consensus 284 Div~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~------~~~~~~~~~~--~d------~~i~~s~~~~~-~--- 342 (568)
T 2vsy_A 284 DLLFDLRGWGGGGRPEVFALRPA--P-VQVNWLAYPGT------SGAPWMDYVL--GD------AFALPPALEPF-Y--- 342 (568)
T ss_dssp SEEEECSSCTTCSSCHHHHTCCS--S-EEEEESSSSSC------CCCTTCCEEE--EC------TTTSCTTTGGG-C---
T ss_pred CEEEECCCCCCcchHHHHhcCCC--c-eeEeeecCCcc------cCCCCceEEE--EC------CCcCCcccccC-C---
Confidence 99997653322111122232222 2 22222110000 0011111111 10 11121111110 0
Q ss_pred cccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhC
Q 004760 393 VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQE 472 (732)
Q Consensus 393 ~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~ 472 (732)
...+.+|||.+......+... +...|+++|++++.+ ++++|++.+ ||++.+++|+..+.++.
T Consensus 343 ---------~~~i~~ipn~~~~~~~~~~~~-------~~~~r~~~~~~~~~~-v~~~g~~~~-K~~~~li~a~~~l~~~~ 404 (568)
T 2vsy_A 343 ---------SEHVLRLQGAFQPSDTSRVVA-------EPPSRTQCGLPEQGV-VLCCFNNSY-KLNPQSMARMLAVLREV 404 (568)
T ss_dssp ---------SSEEEECSSCSCCCCTTCCCC-------CCCCTGGGTCCTTSC-EEEECCCGG-GCCHHHHHHHHHHHHHC
T ss_pred ---------cceeEcCCCcCCCCCCCCCCC-------CCCCccccCCCCCCE-EEEeCCccc-cCCHHHHHHHHHHHHhC
Confidence 124588998654432211111 022467889987764 559999999 99999999999998877
Q ss_pred CCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccc
Q 004760 473 PSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVS 552 (732)
Q Consensus 473 p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~ 552 (732)
|+
T Consensus 405 ~~------------------------------------------------------------------------------ 406 (568)
T 2vsy_A 405 PD------------------------------------------------------------------------------ 406 (568)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 65
Q ss_pred cCCcccceeEEecc-CchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCC-CcEEEccch--hhHHHHHHHcCEEE
Q 004760 553 FGSGHLRRKVLSKS-DGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS-KAMLWTPAT--TRVASLYSAADVYV 628 (732)
Q Consensus 553 iG~~~~~~~LlivG-~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~-~~V~f~G~~--~dv~~lysaADv~V 628 (732)
.+++++| +|+..+.++.++. .+++. ++|+|+|++ +++..+|+.||+||
T Consensus 407 -------~~l~i~G~~g~~~~~l~~~~~---------------------~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v 458 (568)
T 2vsy_A 407 -------SVLWLLSGPGEADARLRAFAH---------------------AQGVDAQRLVFMPKLPHPQYLARYRHADLFL 458 (568)
T ss_dssp -------CEEEEECCSTTHHHHHHHHHH---------------------HTTCCGGGEEEECCCCHHHHHHHGGGCSEEE
T ss_pred -------cEEEEecCCHHHHHHHHHHHH---------------------HcCCChhHEEeeCCCCHHHHHHHHhcCCEEe
Confidence 2577888 7777666665553 33787 899999988 58999999999999
Q ss_pred EccCCCCCCCcHHHHHHHHcCCCEEE-------cCCC-------ChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCH
Q 004760 629 INSQGLGETFGRVTIEAMAFGVPVLG-------TDAG-------GTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 629 ~pS~~~~Egfg~vilEAMA~GlPVI~-------td~g-------G~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~ 694 (732)
+||. . +||++++|||+||+|||+ |+.| |+.|+|.+ |+ ++++++|..+++|+
T Consensus 459 ~ps~--~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~~--~~la~~i~~l~~~~ 523 (568)
T 2vsy_A 459 DTHP--Y-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA----------DD--AAFVAKAVALASDP 523 (568)
T ss_dssp CCSS--S-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----------SH--HHHHHHHHHHHHCH
T ss_pred eCCC--C-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC----------CH--HHHHHHHHHHhcCH
Confidence 9998 7 999999999999999999 9999 99998865 44 99999999999999
Q ss_pred HHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHhhc
Q 004760 695 SVRERMAMEGRKKV--ERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 695 ~~r~~m~~~~r~~v--~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
+.+++|++++++.+ .+.|+|+.+++++.++|++++.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~ 561 (568)
T 2vsy_A 524 AALTALHARVDVLRRASGVFHMDGFADDFGALLQALAR 561 (568)
T ss_dssp HHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998 6789999999999999998875
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.95 E-value=1.4e-26 Score=244.47 Aligned_cols=318 Identities=13% Similarity=0.050 Sum_probs=221.5
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--------------h---
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--------------S--- 305 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--------------~--- 305 (732)
.||++++ .+.||....+++||++|.+.||+|.+++... +.....+...|++++..+... .
T Consensus 7 mkIl~~~--~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (364)
T 1f0k_A 7 KRLMVMA--GGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD-RMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFN 83 (364)
T ss_dssp CEEEEEC--CSSHHHHHHHHHHHHHHHTTTCEEEEEECTT-STHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHH
T ss_pred cEEEEEe--CCCccchhHHHHHHHHHHHcCCEEEEEecCC-cchhhhccccCCceEEecCCccCcCccHHHHHHHHHHHH
Confidence 6899997 4457999999999999999999999998433 322234555699887665421 0
Q ss_pred -------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhh
Q 004760 306 -------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLT 378 (732)
Q Consensus 306 -------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~ 378 (732)
+.++.+||+||+++.... +...+.....+.+ ++++.|.....+..+ ......+.++..++..
T Consensus 84 ~~~~l~~~l~~~~pDvv~~~~~~~~--~~~~~~~~~~~~p-~v~~~~~~~~~~~~~--~~~~~~d~v~~~~~~~------ 152 (364)
T 1f0k_A 84 AWRQARAIMKAYKPDVVLGMGGYVS--GPGGLAAWSLGIP-VVLHEQNGIAGLTNK--WLAKIATKVMQAFPGA------ 152 (364)
T ss_dssp HHHHHHHHHHHHCCSEEEECSSTTH--HHHHHHHHHTTCC-EEEEECSSSCCHHHH--HHTTTCSEEEESSTTS------
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCc--hHHHHHHHHcCCC-EEEEecCCCCcHHHH--HHHHhCCEEEecChhh------
Confidence 123569999999865422 1233333444555 444443321111111 1112244444432210
Q ss_pred HHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCE-EEEEEecCCCCCC
Q 004760 379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDM-LVLSLSSINPGKG 457 (732)
Q Consensus 379 ~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~-lil~vGri~~~KG 457 (732)
. . .+.+|+||++...+.+.. .+++++++.++. +++++|++.+.|+
T Consensus 153 ----------~---------~----~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~ 198 (364)
T 1f0k_A 153 ----------F---------P----NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARIL 198 (364)
T ss_dssp ----------S---------S----SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHH
T ss_pred ----------c---------C----CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHH
Confidence 0 0 136899999876554322 135677776666 4556679999999
Q ss_pred HHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCC
Q 004760 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (732)
Q Consensus 458 ~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~ 537 (732)
++.+++|+..+.+ +
T Consensus 199 ~~~li~a~~~l~~---~--------------------------------------------------------------- 212 (364)
T 1f0k_A 199 NQTMPQVAAKLGD---S--------------------------------------------------------------- 212 (364)
T ss_dssp HHHHHHHHHHHGG---G---------------------------------------------------------------
T ss_pred HHHHHHHHHHhcC---C---------------------------------------------------------------
Confidence 9999999998732 1
Q ss_pred CCCcccccCCCCccccCCccccee-EEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccchhh
Q 004760 538 SPSLFTSIGNTDAVSFGSGHLRRK-VLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (732)
Q Consensus 538 ~p~lf~~~~~~d~v~iG~~~~~~~-LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~~d 616 (732)
.+ ++++|.|+. +.++.++. .+++ ++|.|+|++++
T Consensus 213 ----------------------~~~l~i~G~~~~-~~l~~~~~---------------------~~~~-~~v~~~g~~~~ 247 (364)
T 1f0k_A 213 ----------------------VTIWHQSGKGSQ-QSVEQAYA---------------------EAGQ-PQHKVTEFIDD 247 (364)
T ss_dssp ----------------------EEEEEECCTTCH-HHHHHHHH---------------------HTTC-TTSEEESCCSC
T ss_pred ----------------------cEEEEEcCCchH-HHHHHHHh---------------------hcCC-CceEEecchhh
Confidence 12 456777762 33433332 2255 47999999999
Q ss_pred HHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChh--------hhhccCceEEEECCCCCcHHHHHHHHH
Q 004760 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK--------EIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (732)
Q Consensus 617 v~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~--------EiVe~g~~Gll~~~~d~~~e~La~aL~ 688 (732)
+..+|+.||++|+|| . |++++|||+||+|||+++.+|.. ++++++ .|++++++|.++++|+++|.
T Consensus 248 ~~~~~~~ad~~v~~s---g---~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~ 320 (364)
T 1f0k_A 248 MAAAYAWADVVVCRS---G---ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLA 320 (364)
T ss_dssp HHHHHHHCSEEEECC---C---HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHH
T ss_pred HHHHHHhCCEEEECC---c---hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHH
Confidence 999999999999999 3 99999999999999999998754 566665 59999988733499999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 689 YLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 689 ~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
.+ |++.+++|++++++.++ .|+|+.+++++.++|++..
T Consensus 321 ~l--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 321 GW--SRETLLTMAERARAASI-PDATERVANEVSRVARALE 358 (364)
T ss_dssp TC--CHHHHHHHHHHHHHTCC-TTHHHHHHHHHHHHHTTC-
T ss_pred hc--CHHHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHHHH
Confidence 99 99999999999998875 6999999999999997643
No 18
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.94 E-value=1.2e-25 Score=218.37 Aligned_cols=189 Identities=20% Similarity=0.287 Sum_probs=154.7
Q ss_pred eecCCCCCCCCC--chhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCC-CCCCHHHHHHHHHHhH--HhCCCCchhhhh
Q 004760 407 GFTCSLNTPTSS--PEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN-PGKGQLLLVESAQLMI--EQEPSMDDSKIR 481 (732)
Q Consensus 407 vIpngvd~~~f~--~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~-~~KG~d~LLeA~~~l~--~~~p~~~~~~~~ 481 (732)
+||||+|...|. +..... ...+..+|+++|++++ .+|+++|++. +.||++.+++|+..+. ++.++
T Consensus 1 gipngvd~~~f~~~~~~~~~--~~~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~------- 70 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTGSR--DERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQE------- 70 (200)
T ss_dssp ----CCCTTTSSGGGSCSCH--HHHHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGG-------
T ss_pred CCCCccChhhccccccccch--hhHHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhccCCC-------
Confidence 589999999998 654100 0012678999999755 4899999999 9999999999999985 44333
Q ss_pred hccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCccccee
Q 004760 482 KSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRK 561 (732)
Q Consensus 482 ~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~ 561 (732)
.+
T Consensus 71 ------------------------------------------------------------------------------~~ 72 (200)
T 2bfw_A 71 ------------------------------------------------------------------------------MR 72 (200)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------eE
Confidence 36
Q ss_pred EEeccCch--hhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEE-ccchh--hHHHHHHHcCEEEEccCCCCC
Q 004760 562 VLSKSDGK--QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW-TPATT--RVASLYSAADVYVINSQGLGE 636 (732)
Q Consensus 562 LlivG~G~--~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f-~G~~~--dv~~lysaADv~V~pS~~~~E 636 (732)
++++|.|+ ....++.++. .++ +|+| +|+++ ++..+|+.||++|+||. .|
T Consensus 73 l~i~G~~~~~~~~~l~~~~~---------------------~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~--~e 126 (200)
T 2bfw_A 73 FIIIGKGDPELEGWARSLEE---------------------KHG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FE 126 (200)
T ss_dssp EEEECCBCHHHHHHHHHHHH---------------------HCT---TEEEECSCCCHHHHHHHHTTCSEEEECCS--CC
T ss_pred EEEECCCChHHHHHHHHHHH---------------------hcC---CEEEEeccCCHHHHHHHHHHCCEEEECCC--CC
Confidence 77888876 4444444332 223 8999 99885 99999999999999998 89
Q ss_pred CCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcC
Q 004760 637 TFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYL 713 (732)
Q Consensus 637 gfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys 713 (732)
+||++++|||+||+|||+++.++..|++ ++.+|++++++|+ ++++++|..+++ |++.+++|++++++.+++ ||
T Consensus 127 ~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~--~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 127 PFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDP--GELANAILKALELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp SSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred CccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-cC
Confidence 9999999999999999999999999999 8889999998888 999999999999 999999999999999987 76
No 19
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.93 E-value=1.1e-25 Score=259.34 Aligned_cols=384 Identities=13% Similarity=0.106 Sum_probs=237.8
Q ss_pred cCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech-hHh---------HH---------------------Hhhhh
Q 004760 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-REY---------FD---------------------RAKLV 358 (732)
Q Consensus 310 ~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r-~~~---------~~---------------------~~~~~ 358 (732)
.+||++|+|--.++. ...++.... ...+.++.||... .++ +. ..+..
T Consensus 180 ~~pdIiH~HDW~tg~-~~~~Lk~~~-~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKag 257 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGV-ALPLCRKRR-IDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAA 257 (725)
T ss_dssp SEEEEEEEESGGGCT-HHHHHHHTT-CSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhH-HHHHHHHhC-CCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHH
Confidence 569999888644432 223443332 2345788888652 001 10 01112
Q ss_pred hccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhh-HHHhHHhHHHH----
Q 004760 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM-REKRNLLRDSV---- 433 (732)
Q Consensus 359 l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~-~ekr~~~r~~~---- 433 (732)
...++.++++|+..+.. +. .-++.++ + .+||||+|+..|.|... ..++...|..+
T Consensus 258 a~~AD~ITTVS~~yA~E----i~---~Ll~r~~--------d-----~iIpNGID~~~f~p~~~~~~~k~~aK~klq~~l 317 (725)
T 3nb0_A 258 AHSADVFTTVSQITAFE----AE---HLLKRKP--------D-----GILPNGLNVIKFQAFHEFQNLHALKKEKINDFV 317 (725)
T ss_dssp HHHSSEEEESSHHHHHH----HH---HHTSSCC--------S-----EECCCCBCCCCCSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEECCHHHHHH----HH---HHhcCCC--------C-----EEEcCCccccccCcchhhHHHHHHHHHHHHHHH
Confidence 22389999999997543 21 1123333 2 34999999999988521 11222233333
Q ss_pred HHH----hCCCCCC-EEEEEEecCC-CCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccc
Q 004760 434 RKE----MGLTDQD-MLVLSLSSIN-PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (732)
Q Consensus 434 R~~----lgl~~~~-~lil~vGri~-~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~ 507 (732)
|+. ++++.++ ++|+.+||+. .+||+|++++|+.+|.......+.++...+++|.++.++-+..-.|+|+++.++
T Consensus 318 ~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~ 397 (725)
T 3nb0_A 318 RGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRA 397 (725)
T ss_dssp HHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHH
T ss_pred HhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHH
Confidence 332 3565344 5566689999 789999999999999876332233567788899999999888888999999988
Q ss_pred cccccCcccccccchhhhhccCCcccc-cCCCC-CcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCC
Q 004760 508 SDDVGLSSNELSVSSESFTQLNEPVRK-NLLSP-SLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS 585 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~P~~~-n~~~p-~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~ 585 (732)
+.++...+-.-+.-+-+...+++|... ....| ++-.-++..|.+.+ ++.++...-.. ..+..++.+.-...
T Consensus 398 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~l------kr~~~~~~~~~-~~lpp~~TH~~~~~ 470 (725)
T 3nb0_A 398 LENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVML------KRRILALRRPE-GQLPPIVTHNMVDD 470 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHH------HHHHHHHCCCT-TCCCCSBSEEETTG
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHH------HHHHHhhccCC-CCCCCeeeeecccC
Confidence 888887766666666677767777411 11112 21111111111100 00000000000 00111111111111
Q ss_pred CChhhHHHHHHHHHhcCCCCCc------EEEcc-ch--------hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCC
Q 004760 586 NKVPYVKEILEFLSQHSNLSKA------MLWTP-AT--------TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV 650 (732)
Q Consensus 586 ~~~~y~k~il~~l~~~l~l~~~------V~f~G-~~--------~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~Gl 650 (732)
..++ ++..+.+. ++.+. |+|++ +. .++..+|++||+||+||. +|+||++++||||||+
T Consensus 471 ~~D~----Il~~~r~l-~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~ 543 (725)
T 3nb0_A 471 ANDL----ILNKIRQV-QLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGV 543 (725)
T ss_dssp GGCH----HHHHHHHH-TCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTC
T ss_pred CccH----HHHHHHhc-CCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCC
Confidence 1222 33333222 44333 67775 22 269999999999999998 9999999999999999
Q ss_pred CEEEcCCCChhhhhccC-------ceEEEECCC---CC--cHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHH
Q 004760 651 PVLGTDAGGTKEIVEHN-------VTGLLHPPG---HP--GAQVLAQNLRYLLK-NPSVRERMAMEGRKKVERMYLKKHM 717 (732)
Q Consensus 651 PVI~td~gG~~EiVe~g-------~~Gll~~~~---d~--~~e~La~aL~~LL~-n~~~r~~m~~~~r~~v~~~ys~~~~ 717 (732)
|||+|+.||+.|+|.++ .+|+++++. ++ .+++|+++|..+++ ++..+.+|+.++++.++ .|+|+++
T Consensus 544 PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~-~FSWe~i 622 (725)
T 3nb0_A 544 PSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSD-LLDWKRM 622 (725)
T ss_dssp CEEEETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGG-GGBHHHH
T ss_pred CEEEeCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCCHHHH
Confidence 99999999999999875 369888542 32 12445555555544 77888999999887765 6999999
Q ss_pred HHHHHHHHHHhhc
Q 004760 718 YKKLSQVIYKCMK 730 (732)
Q Consensus 718 ~~~~~ev~~~~l~ 730 (732)
+++|+++|+.++.
T Consensus 623 A~~Yl~~Ye~aL~ 635 (725)
T 3nb0_A 623 GLEYVKARQLALR 635 (725)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
No 20
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.92 E-value=1.3e-24 Score=230.99 Aligned_cols=342 Identities=13% Similarity=0.080 Sum_probs=218.2
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCC-EEEEEEeCCCCCChh-HHHhCCcEE-EEcCCCc--------h------
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGA-TVSAVVLSKRGGLMP-ELARRKIKV-LEDRGEP--------S------ 305 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~-~V~vv~l~~~g~l~~-el~~~gI~v-~~~~~~~--------~------ 305 (732)
.||++++.+. ..-..+..|+++|.+.|+ ++.+++....+.+.. .+...++.+ +...... .
T Consensus 1 mkIl~v~~~~---~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (384)
T 1vgv_A 1 MKVLTVFGTR---PEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEG 77 (384)
T ss_dssp CEEEEEECSH---HHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHHH
T ss_pred CeEEEEeccc---HHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHcCCCCCcceecCCCCccHHHHHHHHHHH
Confidence 3688887653 223446789999999994 888877544433333 334456644 3333210 0
Q ss_pred ---hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech-----hHhHHHh-hhhhc-cccEEEEecHHhHHH
Q 004760 306 ---FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-----REYFDRA-KLVLD-RVKLLVFLSESQTKQ 375 (732)
Q Consensus 306 ---~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r-----~~~~~~~-~~~l~-r~~~li~vS~~~~~~ 375 (732)
+.++.+||+||+++.....|. ..+.....+.+ ++++.+... ..+.... ...+. .++.++++|+.....
T Consensus 78 l~~~l~~~~pDvv~~~~~~~~~~~-~~~~a~~~~ip-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 155 (384)
T 1vgv_A 78 LKPILAEFKPDVVLVHGDTTTTLA-TSLAAFYQRIP-VGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQN 155 (384)
T ss_dssp HHHHHHHHCCSEEEEETTCHHHHH-HHHHHHTTTCC-EEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEESSHHHHHH
T ss_pred HHHHHHHhCCCEEEEeCCchHHHH-HHHHHHHHCCC-EEEEecccccccccCCCchHhhHHHHHhhccEEEcCcHHHHHH
Confidence 233679999999864233333 23334444555 555544211 0111111 12223 378899999886432
Q ss_pred hhhHHHhhhhhccCCCccccccCCCccceEEeecCCC-CCCCCCchhhHHHhHHhHHHHHHHhC-CCC-CCEEEEEEecC
Q 004760 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSL-NTPTSSPEKMREKRNLLRDSVRKEMG-LTD-QDMLVLSLSSI 452 (732)
Q Consensus 376 ~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngv-d~~~f~~~~~~ekr~~~r~~~R~~lg-l~~-~~~lil~vGri 452 (732)
+ ...+..+ ..+.+++|++ |...+.+... ......+..+++++| ++. +.++++++|++
T Consensus 156 ----l----~~~g~~~-----------~~i~vi~n~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~ 215 (384)
T 1vgv_A 156 ----L----LRENVAD-----------SRIFITGNTVIDALLWVRDQV-MSSDKLRSELAANYPFIDPDKKMILVTGHRR 215 (384)
T ss_dssp ----H----HHTTCCG-----------GGEEECCCHHHHHHHHHHHHT-TTCHHHHHHHHTTCTTCCTTSEEEEEECCCB
T ss_pred ----H----HHcCCCh-----------hhEEEeCChHHHHHHhhhhcc-ccchhhhHHHHHhccccCCCCCEEEEEeCCc
Confidence 2 1223322 1347888884 3221111100 000001235778888 854 44678899999
Q ss_pred CCC-CCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCc
Q 004760 453 NPG-KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (732)
Q Consensus 453 ~~~-KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P 531 (732)
.+. ||++.+++|+..+.++.|+
T Consensus 216 ~~~~kg~~~li~a~~~l~~~~~~--------------------------------------------------------- 238 (384)
T 1vgv_A 216 ESFGRGFEEICHALADIATTHQD--------------------------------------------------------- 238 (384)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCTT---------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHhhCCC---------------------------------------------------------
Confidence 876 9999999999999877654
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEec-cCch-hhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEE
Q 004760 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK-SDGK-QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML 609 (732)
Q Consensus 532 ~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~Lliv-G~G~-~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~ 609 (732)
.+++++ |.++ ..+.++.++ +..++|.
T Consensus 239 ----------------------------~~l~i~~g~~~~~~~~l~~~~------------------------~~~~~v~ 266 (384)
T 1vgv_A 239 ----------------------------IQIVYPVHLNPNVREPVNRIL------------------------GHVKNVI 266 (384)
T ss_dssp ----------------------------EEEEEECCBCHHHHHHHHHHH------------------------TTCTTEE
T ss_pred ----------------------------eEEEEEcCCCHHHHHHHHHHh------------------------hcCCCEE
Confidence 123332 4332 222222221 1235899
Q ss_pred Eccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CChhhhhccCceEEEECCCCCcHHHHHHH
Q 004760 610 WTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPGAQVLAQN 686 (732)
Q Consensus 610 f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~~EiVe~g~~Gll~~~~d~~~e~La~a 686 (732)
|+|.. +++..+|+.||++|+|| |.+++||||||+|||+++. ||..|+++++ +|+++++ |+ ++|+++
T Consensus 267 ~~g~~~~~~~~~~~~~ad~~v~~S-------g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d~--~~la~~ 335 (384)
T 1vgv_A 267 LIDPQEYLPFVWLMNHAWLILTDS-------GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-DK--QRIVEE 335 (384)
T ss_dssp EECCCCHHHHHHHHHHCSEEEESS-------STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-SH--HHHHHH
T ss_pred EeCCCCHHHHHHHHHhCcEEEECC-------cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-CH--HHHHHH
Confidence 96532 78999999999999998 2348999999999999987 9999999988 9999976 65 999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 687 LRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 687 L~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
|.++++|++.+++|++++++.. +.|+|+++++.+.++|.++.+
T Consensus 336 i~~ll~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 378 (384)
T 1vgv_A 336 VTRLLKDENEYQAMSRAHNPYG-DGQACSRILEALKNNRISLGS 378 (384)
T ss_dssp HHHHHHCHHHHHHHHSSCCTTC-CSCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHhChHHHhhhhhccCCCc-CCCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999888765 569999999999888766543
No 21
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.91 E-value=2.9e-24 Score=227.19 Aligned_cols=333 Identities=12% Similarity=0.095 Sum_probs=210.0
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEeCCCCCChhH-HHhCCcEE-EEcCC-----Cch--------
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSC-G-ATVSAVVLSKRGGLMPE-LARRKIKV-LEDRG-----EPS-------- 305 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~-G-~~V~vv~l~~~g~l~~e-l~~~gI~v-~~~~~-----~~~-------- 305 (732)
.||++++.+.+.. ..+..++.+|.+. | ++|.+++.........+ +...++++ +.... ...
T Consensus 9 mkIl~v~~~~~~~---~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T 3beo_A 9 LKVMTIFGTRPEA---IKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLE 85 (375)
T ss_dssp EEEEEEECSHHHH---HHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHHHHHH
T ss_pred ceEEEEecCcHHH---HHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcCCCCccccccCCCcccHHHHHHHHHH
Confidence 5899998654322 2456788888876 4 78877763332222222 23345543 22211 100
Q ss_pred ----hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech--hH---hHH-Hhhhhhcc-ccEEEEecHHhHH
Q 004760 306 ----FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR--RE---YFD-RAKLVLDR-VKLLVFLSESQTK 374 (732)
Q Consensus 306 ----~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r--~~---~~~-~~~~~l~r-~~~li~vS~~~~~ 374 (732)
+.++.+||+||+++.....+. ..+.....+.+ ++++.+..+ .. +.. .....+.+ ++.++++|+....
T Consensus 86 ~l~~~l~~~~pDvv~~~~~~~~~~~-~~~~~~~~~ip-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 163 (375)
T 3beo_A 86 GLDKVMKEAKPDIVLVHGDTTTTFI-ASLAAFYNQIP-VGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFSPTAKSAT 163 (375)
T ss_dssp HHHHHHHHHCCSEEEEETTSHHHHH-HHHHHHHTTCC-EEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHH
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHH-HHHHHHHHCCC-EEEEecccccccccCCChhHhhhhHHhhhhheeeCCCHHHHH
Confidence 223679999999764332222 22333344555 444443211 00 111 11122223 7889999988643
Q ss_pred HhhhHHHhhhhhccCCCccccccCCCccceEEeecCC-CCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCC
Q 004760 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCS-LNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (732)
Q Consensus 375 ~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpng-vd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~ 453 (732)
. + ...+..+ ..+.+|+|| +|...+.+... .+..+++++ +++.++++++|++.
T Consensus 164 ~----~----~~~g~~~-----------~~i~vi~n~~~d~~~~~~~~~------~~~~~~~~~--~~~~~vl~~~gr~~ 216 (375)
T 3beo_A 164 N----L----QKENKDE-----------SRIFITGNTAIDALKTTVKET------YSHPVLEKL--GNNRLVLMTAHRRE 216 (375)
T ss_dssp H----H----HHTTCCG-----------GGEEECCCHHHHHHHHHCCSS------CCCHHHHTT--TTSEEEEEECCCGG
T ss_pred H----H----HHcCCCc-----------ccEEEECChhHhhhhhhhhhh------hhHHHHHhc--cCCCeEEEEecccc
Confidence 2 2 1223322 135789998 66544322110 002334444 35566788999998
Q ss_pred CC-CCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcc
Q 004760 454 PG-KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPV 532 (732)
Q Consensus 454 ~~-KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~ 532 (732)
+. ||++.+++|+..+.++.|+
T Consensus 217 ~~~K~~~~li~a~~~l~~~~~~---------------------------------------------------------- 238 (375)
T 3beo_A 217 NLGEPMRNMFRAIKRLVDKHED---------------------------------------------------------- 238 (375)
T ss_dssp GTTHHHHHHHHHHHHHHHHCTT----------------------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHhhCCC----------------------------------------------------------
Confidence 75 9999999999999777665
Q ss_pred cccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEcc
Q 004760 533 RKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTP 612 (732)
Q Consensus 533 ~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G 612 (732)
.++ ++|.|+. ..+...+ .+.+ +..++|+|+|
T Consensus 239 ---------------------------~~~-i~~~g~~-~~~~~~~----------------~~~~----~~~~~v~~~g 269 (375)
T 3beo_A 239 ---------------------------VQV-VYPVHMN-PVVRETA----------------NDIL----GDYGRIHLIE 269 (375)
T ss_dssp ---------------------------EEE-EEECCSC-HHHHHHH----------------HHHH----TTCTTEEEEC
T ss_pred ---------------------------eEE-EEeCCCC-HHHHHHH----------------HHHh----hccCCEEEeC
Confidence 122 2344432 1111111 1111 2236899966
Q ss_pred ch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC-CChhhhhccCceEEEECCCCCcHHHHHHHHHH
Q 004760 613 AT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (732)
Q Consensus 613 ~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~-gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~ 689 (732)
+. .++..+|++||++|+|| |.+++||||||+|||+++. ||..|+++++ +|+++++ |+ ++|+++|.+
T Consensus 270 ~~~~~~~~~~~~~ad~~v~~s-------g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d~--~~la~~i~~ 338 (375)
T 3beo_A 270 PLDVIDFHNVAARSYLMLTDS-------GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-DE--ETIFSLADE 338 (375)
T ss_dssp CCCHHHHHHHHHTCSEEEECC-------HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-CH--HHHHHHHHH
T ss_pred CCCHHHHHHHHHhCcEEEECC-------CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-CH--HHHHHHHHH
Confidence 43 48999999999999988 5679999999999999964 9999999987 9999975 66 999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 690 LLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 690 LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+++|++.+++|++++++.. +.|+|+++++.+.++++
T Consensus 339 ll~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 339 LLSDKEAHDKMSKASNPYG-DGRASERIVEAILKHFN 374 (375)
T ss_dssp HHHCHHHHHHHCCCCCTTC-CSCHHHHHHHHHHHHTT
T ss_pred HHhChHhHhhhhhcCCCCC-CCcHHHHHHHHHHHHhh
Confidence 9999999999999988776 46999999999888763
No 22
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.90 E-value=1.7e-22 Score=227.20 Aligned_cols=307 Identities=10% Similarity=0.065 Sum_probs=198.5
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh--HhHH---Hhhhh---hccccEEEEecHHhHHHhhhHHHh
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR--EYFD---RAKLV---LDRVKLLVFLSESQTKQWLTWCEE 382 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~--~~~~---~~~~~---l~r~~~li~vS~~~~~~~~~~~~~ 382 (732)
.+|+|++|.... ..+..++.....+ .++++.+|.... ..+. ..... +-..+.+.|.+......+...| +
T Consensus 123 ~~DiV~vHdyhl-~~l~~~lr~~~~~-~~i~~~~H~pfp~~~~~~~lp~~~~il~~ll~~d~i~f~~~~~~~~f~~~~-~ 199 (482)
T 1uqt_A 123 DDDIIWIHDYHL-LPFAHELRKRGVN-NRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCL-S 199 (482)
T ss_dssp TTCEEEEESGGG-TTHHHHHHHTTCC-SCEEEECCSCCCCHHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH-H
T ss_pred CCCEEEEECchH-HHHHHHHHHhCCC-CcEEEEEcCCCCCHHHHhhCccHHHHHHhhhccCeEEEECHHHHHHHHHHH-H
Confidence 569999987533 2233444433223 347777764311 1111 01111 1224667777665433222222 1
Q ss_pred hhhhccCC-CccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHH
Q 004760 383 EKLKLRSQ-PAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (732)
Q Consensus 383 e~i~l~~~-~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~L 461 (732)
..+..... ...+.. ......+.+||||+|++.|.+.......+- +..+|++++ ++.+|+++||+.+.||++.+
T Consensus 200 ~~l~~~~~~~~~~~~--~g~~~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~l 273 (482)
T 1uqt_A 200 NLTRVTTRSAKSHTA--WGKAFRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPER 273 (482)
T ss_dssp HHSCEEEETTTEEEE--TTEEEEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHH
T ss_pred HHhCCccccCCeEEE--CCeEEEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHH
Confidence 11111000 000111 112345789999999988754321000000 256788887 56899999999999999999
Q ss_pred HHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCc
Q 004760 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (732)
Q Consensus 462 LeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~l 541 (732)
|+|++.+.++.|+. +
T Consensus 274 l~A~~~ll~~~p~~------------------------~----------------------------------------- 288 (482)
T 1uqt_A 274 FLAYEALLEKYPQH------------------------H----------------------------------------- 288 (482)
T ss_dssp HHHHHHHHHHCGGG------------------------T-----------------------------------------
T ss_pred HHHHHHHHHhCccc------------------------c-----------------------------------------
Confidence 99999998887751 0
Q ss_pred ccccCCCCccccCCcccceeEEeccC-----chhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCC--CcEE-Eccc
Q 004760 542 FTSIGNTDAVSFGSGHLRRKVLSKSD-----GKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS--KAML-WTPA 613 (732)
Q Consensus 542 f~~~~~~d~v~iG~~~~~~~LlivG~-----G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~--~~V~-f~G~ 613 (732)
.+..|+++|. |++.+.++..+ +++...+...++.. ..|+ |.|.
T Consensus 289 ----------------~~v~Lv~vG~p~~~~~~~~~~l~~~l-------------~~l~~~in~~~g~~~~~~v~~~~g~ 339 (482)
T 1uqt_A 289 ----------------GKIRYTQIAPTSRGDVQAYQDIRHQL-------------ENEAGRINGKYGQLGWTPLYYLNQH 339 (482)
T ss_dssp ----------------TTEEEEEECCBCSTTSHHHHHHHHHH-------------HHHHHHHHHHHCBTTBCSEEEECSC
T ss_pred ----------------CcEEEEEEECCCccchHHHHHHHHHH-------------HHHHHHHhhhcccCCCceEEEeCCC
Confidence 1124555664 33333333222 12222222112222 2355 4564
Q ss_pred --hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCC-----CEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHH
Q 004760 614 --TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-----PVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQN 686 (732)
Q Consensus 614 --~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~Gl-----PVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~a 686 (732)
.+++..+|++||+||+||. .||||++++||||||+ |||+|+.+|..+.+. +|+++++.|+ +++|++
T Consensus 340 v~~~el~~ly~~ADv~v~pS~--~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~g~lv~p~d~--~~lA~a 412 (482)
T 1uqt_A 340 FDRKLLMKIFRYSDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDR--DEVAAA 412 (482)
T ss_dssp CCHHHHHHHHHHCSEEEECCS--SBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TSEEECTTCH--HHHHHH
T ss_pred CCHHHHHHHHHHccEEEECCC--cccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC---CeEEECCCCH--HHHHHH
Confidence 4899999999999999997 9999999999999997 899999988888783 7899999998 999999
Q ss_pred HHHHhcC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 687 LRYLLKN-PSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 687 L~~LL~n-~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
|.+++++ ++.++++++++++.+.+ |+|+.++++|++.|+++
T Consensus 413 i~~lL~~~~~~r~~~~~~~~~~v~~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 413 LDRALTMSLAERISRHAEMLDVIVK-NDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhc
Confidence 9999984 67889999999999976 99999999999999876
No 23
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.90 E-value=4.7e-23 Score=194.76 Aligned_cols=130 Identities=20% Similarity=0.322 Sum_probs=106.6
Q ss_pred eeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCC
Q 004760 560 RKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGET 637 (732)
Q Consensus 560 ~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Eg 637 (732)
.+++++|.|+..+.++.++... ++ +|.| |+. +++..+|+.||++|+||. .|+
T Consensus 33 ~~l~i~G~g~~~~~~~~~~~~~---------------------~~--~v~~-g~~~~~~~~~~~~~adv~v~ps~--~e~ 86 (166)
T 3qhp_A 33 IVLLLKGKGPDEKKIKLLAQKL---------------------GV--KAEF-GFVNSNELLEILKTCTLYVHAAN--VES 86 (166)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH---------------------TC--EEEC-CCCCHHHHHHHHTTCSEEEECCC--SCC
T ss_pred eEEEEEeCCccHHHHHHHHHHc---------------------CC--eEEE-eecCHHHHHHHHHhCCEEEECCc--ccC
Confidence 4688889988777666665433 44 7888 875 789999999999999998 999
Q ss_pred CcHHHHHHHHcCC-CEEE-cCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHH
Q 004760 638 FGRVTIEAMAFGV-PVLG-TDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKK 715 (732)
Q Consensus 638 fg~vilEAMA~Gl-PVI~-td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~ 715 (732)
||++++||||||+ |||+ ++.|+..|++.++.+ +++++|+ ++++++|.++++|++.+++|++++++.+ ++|+|+
T Consensus 87 ~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~--~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~s~~ 161 (166)
T 3qhp_A 87 EAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNA--KDLSAKIDWWLENKLERERMQNEYAKSA-LNYTLE 161 (166)
T ss_dssp CCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCH--HHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHC--
T ss_pred ccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHCChh
Confidence 9999999999998 9999 567999999988654 7788887 9999999999999999999999999988 579999
Q ss_pred HHHHH
Q 004760 716 HMYKK 720 (732)
Q Consensus 716 ~~~~~ 720 (732)
+++++
T Consensus 162 ~~~~~ 166 (166)
T 3qhp_A 162 NSVIQ 166 (166)
T ss_dssp -----
T ss_pred hhhcC
Confidence 98764
No 24
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.88 E-value=2e-22 Score=220.14 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=95.6
Q ss_pred CCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHH-------HcCCCEEEcCCCChhhhhccCceEEE-
Q 004760 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAM-------AFGVPVLGTDAGGTKEIVEHNVTGLL- 672 (732)
Q Consensus 603 ~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAM-------A~GlPVI~td~gG~~EiVe~g~~Gll- 672 (732)
++.++|+|+|++ +++..+|++||++|+||. .|+||++++||| |||+|||+|+. +.++.+|++
T Consensus 262 ~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~--~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~ 333 (406)
T 2hy7_A 262 GYGDNVIVYGEMKHAQTIGYIKHARFGIAPYA--SEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFG 333 (406)
T ss_dssp TCCTTEEEECCCCHHHHHHHHHTCSEEECCBS--CSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEE
T ss_pred CCCCCEEEcCCCCHHHHHHHHHhcCEEEECCC--cccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEE
Confidence 677899999987 689999999999999998 999999999999 99999999988 667789999
Q ss_pred ECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHhh
Q 004760 673 HPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQV--IYKCM 729 (732)
Q Consensus 673 ~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev--~~~~l 729 (732)
++++|+ ++|+++|..+++|++. ...+.|+|+.++++++++ |..+.
T Consensus 334 v~~~d~--~~la~ai~~ll~~~~~----------~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 334 YTPGNA--DSVIAAITQALEAPRV----------RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp ECTTCH--HHHHHHHHHHHHCCCC----------CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred eCCCCH--HHHHHHHHHHHhCcch----------hhhhcCCHHHHHHHHHHhhcccccC
Confidence 999988 9999999999998871 223579999999999999 76653
No 25
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.88 E-value=2e-22 Score=218.38 Aligned_cols=304 Identities=12% Similarity=0.096 Sum_probs=202.0
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-ChhHHHhCCcE--EEEcCCCch-----hhhhcCccEEEeC
Q 004760 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELARRKIK--VLEDRGEPS-----FKTSMKADLVIAG 318 (732)
Q Consensus 247 lI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~~el~~~gI~--v~~~~~~~~-----~~~~~k~DlVia~ 318 (732)
+.+|..|. |...++..|+++|.+.| +|.+.+.+..+. ...++. .++. +. .+.... +.+..+||+||+.
T Consensus 43 iwih~~s~-G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~~~~~~~~-~~v~~~~~-~p~~~~~~l~~~l~~~~pDiv~~~ 118 (374)
T 2xci_A 43 LWVHTASI-GEFNTFLPILKELKREH-RILLTYFSPRAREYLKTKS-DFYDCLHP-LPLDNPFSVKRFEELSKPKALIVV 118 (374)
T ss_dssp EEEECSSH-HHHHHHHHHHHHHHHHS-CEEEEESCGGGHHHHHTTG-GGCSEEEE-CCCSSHHHHHHHHHHHCCSEEEEE
T ss_pred EEEEcCCH-HHHHHHHHHHHHHHhcC-CEEEEEcCCcHHHHHHHhc-ccccceeE-CCCCCHHHHHHHHHHhCCCEEEEE
Confidence 45777775 66889999999999999 887666433332 112221 3565 44 444322 4447799999864
Q ss_pred CchhhHHHHHHHHhhcCCCccEEEEEeechhHhHHHhhhhhccccEEEEecHHhHHHhhhHHHhhhhhccCCCccccccC
Q 004760 319 SAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSV 398 (732)
Q Consensus 319 Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~~~~~~~~~~l~r~~~li~vS~~~~~~~~~~~~~e~i~l~~~~~~v~l~~ 398 (732)
.. ..|.. ++.. ... + ++.+........ ..+..+.+++.+++.|+..... . ..++.
T Consensus 119 ~~--~~~~~-~~~~-~~~-p-~~~~~~~~~~~~--~~~~~~~~~d~ii~~S~~~~~~----l----~~~g~--------- 173 (374)
T 2xci_A 119 ER--EFWPS-LIIF-TKV-P-KILVNAYAKGSL--IEKILSKKFDLIIMRTQEDVEK----F----KTFGA--------- 173 (374)
T ss_dssp SC--CCCHH-HHHH-CCS-C-EEEEEECCCCCH--HHHHHHTTCSEEEESCHHHHHH----H----HTTTC---------
T ss_pred Cc--cCcHH-HHHH-HhC-C-EEEEEeecCchH--HHHHHHHhCCEEEECCHHHHHH----H----HHcCC---------
Confidence 21 12222 2222 222 3 332221111111 2234456688999999997443 2 11221
Q ss_pred CCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchh
Q 004760 399 NDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDS 478 (732)
Q Consensus 399 n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~ 478 (732)
. .+.+++|+. |.+.... . +. + ..+++++.|+ ..||++.+++|++.+.++.|+
T Consensus 174 ~----ki~vi~n~~----f~~~~~~-~---------~~--l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~---- 225 (374)
T 2xci_A 174 K----RVFSCGNLK----FICQKGK-G---------IK--L--KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSS---- 225 (374)
T ss_dssp C----SEEECCCGG----GCCCCCS-C---------CC--C--SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTT----
T ss_pred C----eEEEcCCCc----cCCCcCh-h---------hh--h--cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCC----
Confidence 1 247888863 1111100 0 00 1 1245666665 468999999999999766665
Q ss_pred hhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCccc
Q 004760 479 KIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHL 558 (732)
Q Consensus 479 ~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~ 558 (732)
T Consensus 226 -------------------------------------------------------------------------------- 225 (374)
T 2xci_A 226 -------------------------------------------------------------------------------- 225 (374)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEeccCchhh-hhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCC--------CcEEEccchhhHHHHHHHcCEEEE
Q 004760 559 RRKVLSKSDGKQQ-QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS--------KAMLWTPATTRVASLYSAADVYVI 629 (732)
Q Consensus 559 ~~~LlivG~G~~~-~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~--------~~V~f~G~~~dv~~lysaADv~V~ 629 (732)
.+++++|+|+++ +.++.++... ++. .+|.+.|+++++..+|+.||++++
T Consensus 226 -~~lvivG~g~~~~~~l~~~~~~~---------------------gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl 283 (374)
T 2xci_A 226 -LKLILVPRHIENAKIFEKKARDF---------------------GFKTSFFENLEGDVILVDRFGILKELYPVGKIAIV 283 (374)
T ss_dssp -CEEEEEESSGGGHHHHHHHHHHT---------------------TCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEE
T ss_pred -cEEEEECCCHHHHHHHHHHHHHC---------------------CCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEE
Confidence 367888999876 4666665433 333 478999988999999999999988
Q ss_pred ccCCCCCCCcHHHHHHHHcCCCEEEc-CCCChhhhhccC-ceEEEECCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 630 NSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHN-VTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (732)
Q Consensus 630 pS~~~~Egfg~vilEAMA~GlPVI~t-d~gG~~EiVe~g-~~Gll~~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~ 707 (732)
||. +.|++|++++||||||+|||++ +.++..|++++. .+|++++++|+ ++|+++|.++++| +.+++|++++++.
T Consensus 284 ~ss-~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d~--~~La~ai~~ll~d-~~r~~mg~~ar~~ 359 (374)
T 2xci_A 284 GGT-FVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNE--TELVTKLTELLSV-KKEIKVEEKSREI 359 (374)
T ss_dssp CSS-SSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEEECCSH--HHHHHHHHHHHHS-CCCCCHHHHHHHH
T ss_pred CCc-ccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEEEeCCH--HHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 875 2578899999999999999975 789999988753 47888888887 9999999999999 9999999999999
Q ss_pred HHHhcC
Q 004760 708 VERMYL 713 (732)
Q Consensus 708 v~~~ys 713 (732)
+++++.
T Consensus 360 ~~~~~g 365 (374)
T 2xci_A 360 KGCYLE 365 (374)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887544
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.86 E-value=2.2e-20 Score=210.45 Aligned_cols=304 Identities=9% Similarity=0.059 Sum_probs=203.3
Q ss_pred CccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech--hHhHHH--------hhhhhccccEEEEecHHhHHHhhhHH
Q 004760 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR--REYFDR--------AKLVLDRVKLLVFLSESQTKQWLTWC 380 (732)
Q Consensus 311 k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r--~~~~~~--------~~~~l~r~~~li~vS~~~~~~~~~~~ 380 (732)
.-|+|..|--... .++.++..... ..++.|..|-.- .+.|.. .-..+-..+.+.|.+......+...|
T Consensus 149 ~~D~VwVhDYhL~-llp~~lR~~~~-~~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl~~~ 226 (496)
T 3t5t_A 149 ADPVYLVHDYQLV-GVPALLREQRP-DAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESV 226 (496)
T ss_dssp SSCEEEEESGGGT-THHHHHHHHCT-TSCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCccHh-HHHHHHHhhCC-CCeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCCEEEEecHHHHHHHHHHH
Confidence 4678877754332 13344433222 234666655221 111111 11223348899999988766666666
Q ss_pred HhhhhhccCCCccccccCCCccceEEeecCCCCCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHH
Q 004760 381 EEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLL 460 (732)
Q Consensus 381 ~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngvd~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~~KG~d~ 460 (732)
...-.........-.+...+....+.++|+|+|+..|.+... + .+..+|++++ +..+|+++||+.+.||++.
T Consensus 227 ~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~-~----~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~ 298 (496)
T 3t5t_A 227 ADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNP-Q----LPEGIEEWAD---GHRLVVHSGRTDPIKNAER 298 (496)
T ss_dssp HHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----C-C----CCTTHHHHHT---TSEEEEEEEESSGGGCHHH
T ss_pred HHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhH-H----HHHHHHHHhC---CceEEEEcccCccccCHHH
Confidence 322101011000001222334456789999999999976532 1 1245777887 5789999999999999999
Q ss_pred HHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccccCCCCC
Q 004760 461 LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPS 540 (732)
Q Consensus 461 LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~ 540 (732)
+|+|+ .+.++.|+.
T Consensus 299 lL~Af-~ll~~~P~~----------------------------------------------------------------- 312 (496)
T 3t5t_A 299 AVRAF-VLAARGGGL----------------------------------------------------------------- 312 (496)
T ss_dssp HHHHH-HHHHHTSSC-----------------------------------------------------------------
T ss_pred HHHHH-HHHHhCccc-----------------------------------------------------------------
Confidence 99999 998888861
Q ss_pred cccccCCCCccccCCcccceeEEec-----cCchhhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEccc--
Q 004760 541 LFTSIGNTDAVSFGSGHLRRKVLSK-----SDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA-- 613 (732)
Q Consensus 541 lf~~~~~~d~v~iG~~~~~~~Lliv-----G~G~~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~G~-- 613 (732)
. +..|+.+ |+++..++++..+ +++...+...++.. .|+|+|.
T Consensus 313 ----------------~-~v~Lv~Vg~psr~~~~~y~~l~~~l-------------~~lv~~in~~~g~~-~V~f~g~v~ 361 (496)
T 3t5t_A 313 ----------------E-KTRMLVRMNPNRLYVPANADYVHRV-------------ETAVAEANAELGSD-TVRIDNDND 361 (496)
T ss_dssp ----------------T-TEEEEEEEECCCTTSHHHHHHHHHH-------------HHHHHHHHHHHCTT-SEEEEECCC
T ss_pred ----------------c-eEEEEEEECCCCCCchHHHHHHHHH-------------HHHHHHhccccCCc-CEEEeCCCC
Confidence 0 0123333 3444444444333 22222232222333 7999986
Q ss_pred hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcC---CCEEEcCCCChhhhhccCceEEEECCCCCcHHHHHHHHHHH
Q 004760 614 TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFG---VPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYL 690 (732)
Q Consensus 614 ~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~G---lPVI~td~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~~L 690 (732)
.+++..+|++||++|+||. .||||++++|||||| .|+|+|+.+|..+.+. .+|+++++.|+ +++|++|.++
T Consensus 362 ~~el~aly~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~--~~allVnP~D~--~~lA~AI~~a 435 (496)
T 3t5t_A 362 VNHTIACFRRADLLIFNST--VDGQNLSTFEAPLVNERDADVILSETCGAAEVLG--EYCRSVNPFDL--VEQAEAISAA 435 (496)
T ss_dssp HHHHHHHHHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG--GGSEEECTTBH--HHHHHHHHHH
T ss_pred HHHHHHHHHhccEEEECcc--cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC--CCEEEECCCCH--HHHHHHHHHH
Confidence 4789999999999999997 999999999999997 8999999999888884 36999999988 9999999999
Q ss_pred hcCH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 691 LKNP-SVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 691 L~n~-~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
+.++ +.++++.++.++.+.+ ++..++++.|++.+..+
T Consensus 436 L~m~~~er~~r~~~~~~~V~~-~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 436 LAAGPRQRAEAAARRRDAARP-WTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp HHCCHHHHHHHHHHHHHHHTT-CBHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHhhc
Confidence 9864 7888888899998875 99999999999988765
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.85 E-value=3.6e-21 Score=185.85 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=126.9
Q ss_pred hCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCccc
Q 004760 437 MGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (732)
Q Consensus 437 lgl~~~~~lil~vGri~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~ 516 (732)
+.++.++++|+++|++.+.||++.+++|+..+ ++
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~------------------------------------------ 50 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QD------------------------------------------ 50 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TT------------------------------------------
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC----CC------------------------------------------
Confidence 34567778899999999999999999999977 33
Q ss_pred ccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCchhhhhHhhhhhccCCCCCChhhHHHHHH
Q 004760 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILE 596 (732)
Q Consensus 517 ~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~~~~~Lk~li~~~G~~~~~~~y~k~il~ 596 (732)
.+++++|.|+..+.++.++.
T Consensus 51 -------------------------------------------~~l~i~G~~~~~~~l~~~~~----------------- 70 (177)
T 2f9f_A 51 -------------------------------------------EKLYIVGWFSKGDHAERYAR----------------- 70 (177)
T ss_dssp -------------------------------------------SCEEEEBCCCTTSTHHHHHH-----------------
T ss_pred -------------------------------------------cEEEEEecCccHHHHHHHHH-----------------
Confidence 24667787766554444442
Q ss_pred HHHhcCCCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEEC
Q 004760 597 FLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHP 674 (732)
Q Consensus 597 ~l~~~l~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~ 674 (732)
.+ .+++.++|.|+|++ +++..+|+.||++|+||. .|+||++++||||||+|||+++.++..|+++++.+|+++
T Consensus 71 ~~--~~~l~~~v~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~- 145 (177)
T 2f9f_A 71 KI--MKIAPDNVKFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV- 145 (177)
T ss_dssp HH--HHHSCTTEEEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-
T ss_pred hh--hcccCCcEEEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-
Confidence 00 22677899999988 459999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHhcCHHH-HHHHHHH
Q 004760 675 PGHPGAQVLAQNLRYLLKNPSV-RERMAME 703 (732)
Q Consensus 675 ~~d~~~e~La~aL~~LL~n~~~-r~~m~~~ 703 (732)
+.|. ++|+++|.++++|++. ++++.++
T Consensus 146 ~~d~--~~l~~~i~~l~~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 146 NADV--NEIIDAMKKVSKNPDKFKKDCFRR 173 (177)
T ss_dssp CSCH--HHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHhCHHHHHHHHHHH
Confidence 7777 9999999999999875 4444333
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.84 E-value=1.3e-20 Score=200.20 Aligned_cols=327 Identities=14% Similarity=0.061 Sum_probs=201.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCCCCC-hhHHHhCCcEE-EEcCCC----c----------h
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGGL-MPELARRKIKV-LEDRGE----P----------S 305 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~-G~~V~vv~l~~~g~l-~~el~~~gI~v-~~~~~~----~----------~ 305 (732)
.||++++.+.+..| .+..|+++|.+. ||+|.+++....... ...+...++.+ +..... . .
T Consensus 6 mkIl~v~~~~~~~~---~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (376)
T 1v4v_A 6 KRVVLAFGTRPEAT---KMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQ 82 (376)
T ss_dssp EEEEEEECSHHHHH---HHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHH
T ss_pred eEEEEEEeccHHHH---HHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcCCCcccccccCCCCccHHHHHHHHHHH
Confidence 58999986643222 356889999998 799888773322111 22345566654 333211 0 0
Q ss_pred ---hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeechh-----HhHH-Hhhhhhc-cccEEEEecHHhHHH
Q 004760 306 ---FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-----EYFD-RAKLVLD-RVKLLVFLSESQTKQ 375 (732)
Q Consensus 306 ---~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r~-----~~~~-~~~~~l~-r~~~li~vS~~~~~~ 375 (732)
+.+..+||+||+++.....|. ..++....+.+ +++..+.... .+.. .....+. ..+.+++.|+.....
T Consensus 83 l~~~l~~~~pDvv~~~~~~~~~~~-~~~~a~~~~ip-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (376)
T 1v4v_A 83 AARALKEMGADYVLVHGDTLTTFA-VAWAAFLEGIP-VGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKAN 160 (376)
T ss_dssp HHHHHHHTTCSEEEEESSCHHHHH-HHHHHHHTTCC-EEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCChHHHHH-HHHHHHHhCCC-EEEEeCCCccccccCCCchHHHHHHHHHHhceeeCCCHHHHHH
Confidence 223779999999764333333 23344445555 4332211110 0001 1112222 267788888775332
Q ss_pred hhhHHHhhhhhccCCCccccccCCCccceEEeecCCC-CCCCCCchhhHHHhHHhHHHHHHHhCCCCCCEEEEEEecCCC
Q 004760 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSL-NTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (732)
Q Consensus 376 ~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpngv-d~~~f~~~~~~ekr~~~r~~~R~~lgl~~~~~lil~vGri~~ 454 (732)
. .+.+..+ ..+.+++|+. |...+. . . +..+|+++ +++.++++++||+..
T Consensus 161 ----l----~~~g~~~-----------~ki~vi~n~~~d~~~~~--~--~-----~~~~~~~~--~~~~~vl~~~gr~~~ 210 (376)
T 1v4v_A 161 ----L----LKEGKRE-----------EGILVTGQTGVDAVLLA--A--K-----LGRLPEGL--PEGPYVTVTMHRREN 210 (376)
T ss_dssp ----H----HTTTCCG-----------GGEEECCCHHHHHHHHH--H--H-----HCCCCTTC--CSSCEEEECCCCGGG
T ss_pred ----H----HHcCCCc-----------ceEEEECCchHHHHhhh--h--h-----hhHHHHhc--CCCCEEEEEeCcccc
Confidence 2 2223322 1246777753 211110 0 0 01122333 245567788999988
Q ss_pred CCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhhhhccCCcccc
Q 004760 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (732)
Q Consensus 455 ~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 534 (732)
.||++.+++|++.+.++.|+
T Consensus 211 ~k~~~~ll~a~~~l~~~~~~------------------------------------------------------------ 230 (376)
T 1v4v_A 211 WPLLSDLAQALKRVAEAFPH------------------------------------------------------------ 230 (376)
T ss_dssp GGGHHHHHHHHHHHHHHCTT------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhhCCC------------------------------------------------------------
Confidence 88999999999999777664
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEe-ccCch-hhhhHhhhhhccCCCCCChhhHHHHHHHHHhcCCCCCcEEEc-
Q 004760 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLS-KSDGK-QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT- 611 (732)
Q Consensus 535 n~~~p~lf~~~~~~d~v~iG~~~~~~~Lli-vG~G~-~~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l~l~~~V~f~- 611 (732)
.++++ .|.++ .++.++.++ +..++|+|+
T Consensus 231 -------------------------~~lv~~~g~~~~~~~~l~~~~------------------------~~~~~v~~~g 261 (376)
T 1v4v_A 231 -------------------------LTFVYPVHLNPVVREAVFPVL------------------------KGVRNFVLLD 261 (376)
T ss_dssp -------------------------SEEEEECCSCHHHHHHHHHHH------------------------TTCTTEEEEC
T ss_pred -------------------------eEEEEECCCCHHHHHHHHHHh------------------------ccCCCEEEEC
Confidence 12333 36554 233333332 113589999
Q ss_pred --cchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc-CCCChhhhhccCceEEEECCCCCcHHHHHHHHH
Q 004760 612 --PATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (732)
Q Consensus 612 --G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t-d~gG~~EiVe~g~~Gll~~~~d~~~e~La~aL~ 688 (732)
|+. ++..+|++||++|+|| .|+ ++||||||+|||++ +.++..|+++++ +|++++ .|+ ++|+++|.
T Consensus 262 ~~g~~-~~~~~~~~ad~~v~~S------~g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~--~~la~~i~ 329 (376)
T 1v4v_A 262 PLEYG-SMAALMRASLLLVTDS------GGL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDP--EGVYRVVK 329 (376)
T ss_dssp CCCHH-HHHHHHHTEEEEEESC------HHH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCH--HHHHHHHH
T ss_pred CCCHH-HHHHHHHhCcEEEECC------cCH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCH--HHHHHHHH
Confidence 555 8999999999999988 233 88999999999998 569999988765 799886 355 99999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 689 YLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 689 ~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
++++|++.+++|++++ +.|.+...++++.+.+.+++.
T Consensus 330 ~ll~d~~~~~~~~~~~-----~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 330 GLLENPEELSRMRKAK-----NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp HHHTCHHHHHHHHHSC-----CSSCCSCHHHHHHHHHHHHTT
T ss_pred HHHhChHhhhhhcccC-----CCCCCChHHHHHHHHHHHHhc
Confidence 9999999999998643 356776777888888777665
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.76 E-value=8.2e-17 Score=172.81 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=100.2
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~ 678 (732)
.++++|.|.|+. ++..+|+.||++|.++ .+.+++|||++|+|+|++..++ ..+.+.+..+|+++++++.
T Consensus 289 ~~~~~v~~~~~~-~~~~~l~~ad~~v~~~------g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~ 361 (412)
T 3otg_A 289 EVPANVRLESWV-PQAALLPHVDLVVHHG------GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNI 361 (412)
T ss_dssp CCCTTEEEESCC-CHHHHGGGCSEEEESC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGC
T ss_pred cCCCcEEEeCCC-CHHHHHhcCcEEEECC------chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccC
Confidence 345789999999 8999999999999666 4579999999999999976654 7778887789999988744
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
++++|+++|.++++|++.+++|++.+++... .++++++++.+.+++..
T Consensus 362 ~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 362 SPDSVSGAAKRLLAEESYRAGARAVAAEIAA-MPGPDEVVRLLPGFASR 409 (412)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-SCCHHHHHTTHHHHHC-
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 5599999999999999999999999988776 58999999999888754
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.73 E-value=3.5e-16 Score=168.81 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=85.5
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCCh--------hhhhccCceEEEECCCC
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT--------KEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~--------~EiVe~g~~Gll~~~~d 677 (732)
.++.+.++.++++++|++||++|.-+ .+.++.|+|++|+|+|....+.. .+.+.+...|++++..+
T Consensus 235 ~~~~v~~f~~dm~~~l~~aDlvI~ra------G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~ 308 (365)
T 3s2u_A 235 VEADVAPFISDMAAAYAWADLVICRA------GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKS 308 (365)
T ss_dssp CCCEEESCCSCHHHHHHHCSEEEECC------CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTT
T ss_pred cccccccchhhhhhhhccceEEEecC------CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCC
Confidence 46788899999999999999999544 47899999999999998766431 24455556899998887
Q ss_pred CcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQV 724 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev 724 (732)
.+++.|+++|.++++||+.+++|++++++.... ...+++++.++++
T Consensus 309 ~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~-~aa~~ia~~i~~l 354 (365)
T 3s2u_A 309 TGAAELAAQLSEVLMHPETLRSMADQARSLAKP-EATRTVVDACLEV 354 (365)
T ss_dssp CCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCT-THHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 777999999999999999999999999865432 3334444444443
No 31
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.67 E-value=9.9e-15 Score=158.25 Aligned_cols=116 Identities=11% Similarity=0.116 Sum_probs=95.6
Q ss_pred CCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCCc
Q 004760 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 604 l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~~ 679 (732)
++++|.+.|+.++. .+|+.||++|..+ .+++++|||++|+|+|++..++ ..+.+.+...|++++.++.+
T Consensus 281 ~~~~v~~~~~~~~~-~~l~~ad~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~ 353 (430)
T 2iyf_A 281 LPDNVEVHDWVPQL-AILRQADLFVTHA------GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEAT 353 (430)
T ss_dssp CCTTEEEESSCCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CC
T ss_pred CCCCeEEEecCCHH-HHhhccCEEEECC------CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCC
Confidence 45689999998777 8999999999755 3479999999999999998765 45666667789999877555
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
.+.|+++|.++++|++.+++|++.+++... .++++++++.+.+++.+
T Consensus 354 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 400 (430)
T 2iyf_A 354 ADLLRETALALVDDPEVARRLRRIQAEMAQ-EGGTRRAADLIEAELPA 400 (430)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHhhc
Confidence 699999999999999999999998887665 47888888888776543
No 32
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.67 E-value=1.7e-15 Score=165.43 Aligned_cols=341 Identities=14% Similarity=0.155 Sum_probs=199.9
Q ss_pred hhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCCCC-ChhHHHhCCcE-EEEcCC--C-ch----
Q 004760 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGG-LMPELARRKIK-VLEDRG--E-PS---- 305 (732)
Q Consensus 236 ~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~-G~~V~vv~l~~~g~-l~~el~~~gI~-v~~~~~--~-~~---- 305 (732)
|.+-|..+||++|+.+-+ | -..+..|.++|.+. |+++.+++....-. ..+.++..+++ .+.+.. . ..
T Consensus 19 ~~~~~~m~ki~~v~Gtr~--~-~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~ 95 (396)
T 3dzc_A 19 YFQSNAMKKVLIVFGTRP--E-AIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGV 95 (396)
T ss_dssp -----CCEEEEEEECSHH--H-HHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHH
T ss_pred hHHhCCCCeEEEEEeccH--h-HHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCCCceeeecCCCCCCHHHH
Confidence 444466689999976654 2 23456788899886 78887676222111 12335567773 223322 1 11
Q ss_pred ----------hhhhcCccEEEeCCchhhHHHHHHHHhhcCCCccEEEEEeech-----hHhHHHhh-hhhcc-ccEEEEe
Q 004760 306 ----------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-----REYFDRAK-LVLDR-VKLLVFL 368 (732)
Q Consensus 306 ----------~~~~~k~DlVia~Sav~~~~i~~~i~~~~~~~~~ivw~i~e~r-----~~~~~~~~-~~l~r-~~~li~v 368 (732)
+..+.+||+||++......| ...++.+..+.| ++....-.+ ..+..... ..+.+ .+.+++.
T Consensus 96 ~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~-~~~~aa~~~~IP-v~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~~~~~~ 173 (396)
T 3dzc_A 96 TSKILLGMQQVLSSEQPDVVLVHGDTATTF-AASLAAYYQQIP-VGHVEAGLRTGNIYSPWPEEGNRKLTAALTQYHFAP 173 (396)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTSHHHH-HHHHHHHTTTCC-EEEETCCCCCSCTTSSTTHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchhHH-HHHHHHHHhCCC-EEEEECCccccccccCCcHHHHHHHHHHhcCEEECC
Confidence 33378999999876443333 334555666766 433211000 01112111 22233 4666677
Q ss_pred cHHhHHHhhhHHHhhhhhccCCCccccccCCCccceEEeecCC-CCCCCCCchhhHHHhHHhHHHHHHHhC-CCCCC-EE
Q 004760 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCS-LNTPTSSPEKMREKRNLLRDSVRKEMG-LTDQD-ML 445 (732)
Q Consensus 369 S~~~~~~~~~~~~~e~i~l~~~~~~v~l~~n~~~~~v~vIpng-vd~~~f~~~~~~ekr~~~r~~~R~~lg-l~~~~-~l 445 (732)
++..... . ++.+..+ + .+.++.|+ +|...+.+... +....++..+|+++| ++.++ ++
T Consensus 174 se~~~~~----l----~~~G~~~-------~----ki~vvGn~~~d~~~~~~~~~-~~~~~~~~~~r~~lg~l~~~~~~v 233 (396)
T 3dzc_A 174 TDTSRAN----L----LQENYNA-------E----NIFVTGNTVIDALLAVREKI-HTDMDLQATLESQFPMLDASKKLI 233 (396)
T ss_dssp SHHHHHH----H----HHTTCCG-------G----GEEECCCHHHHHHHHHHHHH-HHCHHHHHHHHHTCTTCCTTSEEE
T ss_pred CHHHHHH----H----HHcCCCc-------C----cEEEECCcHHHHHHHhhhhc-ccchhhHHHHHHHhCccCCCCCEE
Confidence 7764332 2 2334433 1 23566653 22211111100 000112367889999 45444 44
Q ss_pred EEEEecC-CCCCCHHHHHHHHHHhHHhCCCCchhhhhhccccccccccccccccccccccccccccccCcccccccchhh
Q 004760 446 VLSLSSI-NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSES 524 (732)
Q Consensus 446 il~vGri-~~~KG~d~LLeA~~~l~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~~~~~~~~~~~~~~~~~~ 524 (732)
+++.+|. +..|+++.+++|+..+.++.|+
T Consensus 234 lv~~hR~~~~~~~~~~ll~A~~~l~~~~~~-------------------------------------------------- 263 (396)
T 3dzc_A 234 LVTGHRRESFGGGFERICQALITTAEQHPE-------------------------------------------------- 263 (396)
T ss_dssp EEECSCBCCCTTHHHHHHHHHHHHHHHCTT--------------------------------------------------
T ss_pred EEEECCcccchhHHHHHHHHHHHHHHhCCC--------------------------------------------------
Confidence 5555564 3568899999999999877665
Q ss_pred hhccCCcccccCCCCCcccccCCCCccccCCcccceeEEe-ccCchh-hhhHhhhhhccCCCCCChhhHHHHHHHHHhcC
Q 004760 525 FTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLS-KSDGKQ-QQALKILIGSVGSKSNKVPYVKEILEFLSQHS 602 (732)
Q Consensus 525 ~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~Lli-vG~G~~-~~~Lk~li~~~G~~~~~~~y~k~il~~l~~~l 602 (732)
.++++ .|.++. ++.++.+ +
T Consensus 264 -----------------------------------~~~v~~~g~~~~~~~~l~~~------------------------~ 284 (396)
T 3dzc_A 264 -----------------------------------CQILYPVHLNPNVREPVNKL------------------------L 284 (396)
T ss_dssp -----------------------------------EEEEEECCBCHHHHHHHHHH------------------------T
T ss_pred -----------------------------------ceEEEEeCCChHHHHHHHHH------------------------H
Confidence 12333 343321 1222211 1
Q ss_pred CCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc-CCCChhhhhccCceEEEECCCCCc
Q 004760 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 603 ~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t-d~gG~~EiVe~g~~Gll~~~~d~~ 679 (732)
+..++|+++++. .++..+|++||++|.+| + |. ++|||++|+|||++ +.++..|+++++ ++++++. |.
T Consensus 285 ~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G---g~-~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d~- 354 (396)
T 3dzc_A 285 KGVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G---GI-QEEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-NQ- 354 (396)
T ss_dssp TTCTTEEEECCCCHHHHHHHHHHCSEEEESC---S---GG-GTTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-CH-
T ss_pred cCCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c---cH-HHHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-CH-
Confidence 334689997765 58889999999999888 2 33 38999999999999 778889999887 5677764 55
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+++++++..+++|++.+++|++++. .|.....++++.+++.
T Consensus 355 -~~l~~ai~~ll~d~~~~~~m~~~~~-----~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 355 -QQICDALSLLLTDPQAYQAMSQAHN-----PYGDGKACQRIADILA 395 (396)
T ss_dssp -HHHHHHHHHHHHCHHHHHHHHTSCC-----TTCCSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCHHHHHHHhhccC-----CCcCChHHHHHHHHHh
Confidence 9999999999999999999987653 3566666777776654
No 33
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.65 E-value=6.3e-16 Score=166.24 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=89.0
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc----CCCChhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT----DAGGTKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t----d~gG~~EiVe~g~~Gll~~~~d~ 678 (732)
.++++|++.|+. ++..+|..||++|.. +.+.+++|||++|+|+|+. +..+..+.+++...|++++.++.
T Consensus 281 ~~~~~v~~~~~~-~~~~ll~~ad~~v~~------gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~ 353 (398)
T 4fzr_A 281 PLPEGVLAAGQF-PLSAIMPACDVVVHH------GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQA 353 (398)
T ss_dssp -CCTTEEEESCC-CHHHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC----
T ss_pred cCCCcEEEeCcC-CHHHHHhhCCEEEec------CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccC
Confidence 346789999998 689999999999943 4578999999999999994 55577888888889999987754
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLS 722 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ 722 (732)
+.+.|+++|.++++|++.+++|++.+++... ..+++++++.+.
T Consensus 354 ~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 396 (398)
T 4fzr_A 354 GVESVLAACARIRDDSSYVGNARRLAAEMAT-LPTPADIVRLIE 396 (398)
T ss_dssp ---CHHHHHHHHHHCTHHHHHHHHHHHHHTT-SCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHc-CCCHHHHHHHHh
Confidence 4589999999999999999999888877654 588888887664
No 34
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.62 E-value=4.9e-14 Score=150.18 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=96.7
Q ss_pred CCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc-----CCCChhhhhccCceEEEECCCCC
Q 004760 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-----DAGGTKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 604 l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t-----d~gG~~EiVe~g~~Gll~~~~d~ 678 (732)
++++|++.++.++. ++|..||++|..+ ...+++|||++|+|+|+. +..+..+.+.+...|..++.++.
T Consensus 279 ~~~~v~~~~~~~~~-~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~ 351 (402)
T 3ia7_A 279 LPPNVEAHQWIPFH-SVLAHARACLTHG------TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQL 351 (402)
T ss_dssp CCTTEEEESCCCHH-HHHTTEEEEEECC------CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGC
T ss_pred CCCcEEEecCCCHH-HHHhhCCEEEECC------CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCC
Confidence 45789999998777 9999999999665 346889999999999954 44567778888889999887755
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKC 728 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~ 728 (732)
+.+.|++++.++++|++.+++|++.+.+.. +....+++++.+.+++...
T Consensus 352 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 400 (402)
T 3ia7_A 352 EPASIREAVERLAADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLGRV 400 (402)
T ss_dssp SHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhhc
Confidence 669999999999999999999988776654 4588899999888887653
No 35
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.61 E-value=5.2e-15 Score=158.21 Aligned_cols=116 Identities=9% Similarity=0.097 Sum_probs=91.8
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC----CCChhhhhccCceEEEECC--C
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD----AGGTKEIVEHNVTGLLHPP--G 676 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td----~gG~~EiVe~g~~Gll~~~--~ 676 (732)
+++++|++.|+. +...++..||++|.. +.+.+++|||++|+|+|+.. ..+..+.+++...|+++++ .
T Consensus 267 ~~~~~v~~~~~~-~~~~ll~~ad~~v~~------~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~ 339 (391)
T 3tsa_A 267 DLPDNARIAESV-PLNLFLRTCELVICA------GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQA 339 (391)
T ss_dssp TCCTTEEECCSC-CGGGTGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHH
T ss_pred cCCCCEEEeccC-CHHHHHhhCCEEEeC------CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccc
Confidence 345789999987 345677999999944 45679999999999999954 4556777888889999987 3
Q ss_pred CCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+.+.+.|++++.++++|++.+++|++.+++... ...++++++.+.+++.
T Consensus 340 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 340 QSDHEQFTDSIATVLGDTGFAAAAIKLSDEITA-MPHPAALVRTLENTAA 388 (391)
T ss_dssp HTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHT-SCCHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 334499999999999999999999888776654 5888888887776553
No 36
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.59 E-value=1.7e-14 Score=158.12 Aligned_cols=110 Identities=21% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc-CCCChhhhhccCceEEEECCCCCcH
Q 004760 604 LSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPGA 680 (732)
Q Consensus 604 l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t-d~gG~~EiVe~g~~Gll~~~~d~~~ 680 (732)
..++|+++++. .++..+|++||++|.+| |.+.+|||++|+|+|++ +.++..|.++.+ +|++++. |.
T Consensus 280 ~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-------Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d~-- 348 (403)
T 3ot5_A 280 GHERIHLIEPLDAIDFHNFLRKSYLVFTDS-------GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-NK-- 348 (403)
T ss_dssp TCTTEEEECCCCHHHHHHHHHHEEEEEECC-------HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-CH--
T ss_pred CCCCEEEeCCCCHHHHHHHHHhcCEEEECC-------ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-CH--
Confidence 34689999976 49999999999999777 23448999999999999 778888998776 8888864 55
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 681 QVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
+++++++..++.|++.+++|+.++. .|.....++++.+++...+
T Consensus 349 ~~l~~ai~~ll~~~~~~~~m~~~~~-----~~g~~~aa~rI~~~l~~~l 392 (403)
T 3ot5_A 349 ENLIKEALDLLDNKESHDKMAQAAN-----PYGDGFAANRILAAIKSHF 392 (403)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSCC-----TTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHhhcC-----cccCCcHHHHHHHHHHHHh
Confidence 9999999999999999999976543 3444555666666665544
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.55 E-value=1.3e-13 Score=148.37 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=92.1
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEE----cCCCChh--hhhccCceEEEECCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLG----TDAGGTK--EIVEHNVTGLLHPPG 676 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~----td~gG~~--EiVe~g~~Gll~~~~ 676 (732)
+++++|.+.|+. ++..+|..||++|.. +.+.++.|||++|+|+|+ .+..+.. +.+++...|++++.+
T Consensus 280 ~~~~~v~~~~~~-~~~~ll~~ad~~v~~------~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~ 352 (398)
T 3oti_A 280 TLPRNVRAVGWT-PLHTLLRTCTAVVHH------GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSD 352 (398)
T ss_dssp SCCTTEEEESSC-CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGG
T ss_pred cCCCcEEEEccC-CHHHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCC
Confidence 456789999998 899999999999943 456799999999999999 6668888 999888899999877
Q ss_pred CCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
+.+.+.++ ++++|++.+++|++.+++... ..+++.+++.+.+++
T Consensus 353 ~~~~~~l~----~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 353 KVDADLLR----RLIGDESLRTAAREVREEMVA-LPTPAETVRRIVERI 396 (398)
T ss_dssp GCCHHHHH----HHHHCHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred CCCHHHHH----HHHcCHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 65446665 888999999999888877654 589999888887765
No 38
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.54 E-value=8.3e-13 Score=142.25 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=94.7
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEc----CCCChhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT----DAGGTKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~t----d~gG~~EiVe~g~~Gll~~~~d~ 678 (732)
.++++|.+.++.++. .+|..||++|..+ ...+++|||++|+|+|+. +.....+.+.+...|..++.++.
T Consensus 294 ~~~~~v~~~~~~~~~-~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~ 366 (415)
T 3rsc_A 294 DLPPNVEAHRWVPHV-KVLEQATVCVTHG------GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKA 366 (415)
T ss_dssp CCCTTEEEESCCCHH-HHHHHEEEEEESC------CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGC
T ss_pred CCCCcEEEEecCCHH-HHHhhCCEEEECC------cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCC
Confidence 345789999998777 9999999999665 346889999999999994 44456677777778988887755
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYK 727 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~ 727 (732)
+.+.|++++.++++|++.+++|++.+.+... ....+++++.+.+++..
T Consensus 367 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 367 DGDTLLAAVGAVAADPALLARVEAMRGHVRR-AGGAARAADAVEAYLAR 414 (415)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhc
Confidence 6699999999999999999999887776554 57888888888877654
No 39
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.47 E-value=1.5e-11 Score=131.23 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=89.5
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCCcH
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHPGA 680 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~~~ 680 (732)
+++|.+ |+. +..++|..||++|..+ .+.+++|||++|+|+|+....+ ..+.+++...|++++..+.+.
T Consensus 263 ~~~v~~-~~~-~~~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~ 334 (384)
T 2p6p_A 263 VPQARV-GWT-PLDVVAPTCDLLVHHA------GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDST 334 (384)
T ss_dssp CTTSEE-ECC-CHHHHGGGCSEEEECS------CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCH
T ss_pred CCceEE-cCC-CHHHHHhhCCEEEeCC------cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCH
Confidence 467888 987 4678999999999654 4568999999999999998754 666677667899988765566
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 681 QVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 681 e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+.++++|.++++|++.+++|++.+.+... .-..+.+++.+..++.
T Consensus 335 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 335 EAIADSCQELQAKDTYARRAQDLSREISG-MPLPATVVTALEQLAH 379 (384)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHhh
Confidence 99999999999999999999887766544 4567777666665543
No 40
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.40 E-value=2.4e-11 Score=130.84 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=86.9
Q ss_pred cEEEccch--hhHHHHHHHcCEEEEccCC-----CCCCCcHHHHHHHHcCCCEEEcCCCChhhhhccCceEEEECCCCCc
Q 004760 607 AMLWTPAT--TRVASLYSAADVYVINSQG-----LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~-----~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~g~~Gll~~~~d~~ 679 (732)
+|+|+|+. ++++.+|+.+|+.++...+ +...+|.+++||||||+|||+++.++..|+|+++.+|++++ +.
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~~--~~- 291 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIVK--DV- 291 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEES--SH-
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEeC--CH-
Confidence 89999976 7899999999988776220 01356999999999999999999999999999999999986 34
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKL 721 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~ 721 (732)
++++++|..+ +++.+++|++++++..++ +++..+.++.
T Consensus 292 -~e~~~~i~~l--~~~~~~~m~~na~~~a~~-~~~~~f~k~~ 329 (339)
T 3rhz_A 292 -EEAIMKVKNV--NEDEYIELVKNVRSFNPI-LRKGFFTRRL 329 (339)
T ss_dssp -HHHHHHHHHC--CHHHHHHHHHHHHHHTHH-HHTTHHHHHH
T ss_pred -HHHHHHHHHh--CHHHHHHHHHHHHHHHHH-hhccHHHHHH
Confidence 8899999887 467789999999987653 5555544443
No 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.30 E-value=1.8e-10 Score=126.14 Aligned_cols=116 Identities=13% Similarity=0.054 Sum_probs=94.5
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~ 678 (732)
+++++|.+.++.++ ..+|..||++|.. +.+.++.|||++|+|+|+....+ ..+.+++...|++++..+.
T Consensus 316 ~~~~~v~~~~~~~~-~~ll~~ad~~V~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~ 388 (441)
T 2yjn_A 316 NIPDNVRTVGFVPM-HALLPTCAATVHH------GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPEL 388 (441)
T ss_dssp SCCSSEEECCSCCH-HHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTC
T ss_pred cCCCCEEEecCCCH-HHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccC
Confidence 34578999999876 7889999999954 35679999999999999998744 5666766678999887766
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+.+.|+++|.++++|++.+++|++.+.+.. +....+.+++.+.+++.
T Consensus 389 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 389 TPDQLRESVKRVLDDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 669999999999999999999988777655 45788888887777654
No 42
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.20 E-value=2.8e-09 Score=115.59 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=88.5
Q ss_pred CCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCCc
Q 004760 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 604 l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~~ 679 (732)
++++|.+.++..+. .+|..||++|..+ ..++++|||++|+|+|+....+ ..+.+++...|+.++..+.+
T Consensus 303 ~~~~v~~~~~~~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~ 375 (424)
T 2iya_A 303 VPPNVEVHQWVPQL-DILTKASAFITHA------GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVT 375 (424)
T ss_dssp CCTTEEEESSCCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCC
T ss_pred CCCCeEEecCCCHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCC
Confidence 45689999988777 8999999988543 4589999999999999998753 44556666789888766555
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
.+.++++|.++++|++.++++.+.+.+.. +....+++++.+.+++.
T Consensus 376 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 376 AEKLREAVLAVASDPGVAERLAAVRQEIR-EAGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Confidence 69999999999999998888877666543 34566666666666554
No 43
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.16 E-value=9.5e-11 Score=128.03 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=69.2
Q ss_pred CcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC-ChhhhhccCceEEEECCCCCcHHH
Q 004760 606 KAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GTKEIVEHNVTGLLHPPGHPGAQV 682 (732)
Q Consensus 606 ~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g-G~~EiVe~g~~Gll~~~~d~~~e~ 682 (732)
++|+++++. .++..+|+.||+++.+| |.++.||+++|+|||+.... +.+|.++.| ++++++. |. +.
T Consensus 263 ~~v~l~~~lg~~~~~~l~~~adlvvt~S-------Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d~--~~ 331 (385)
T 4hwg_A 263 DKIRFLPAFSFTDYVKLQMNAFCILSDS-------GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-KA--ER 331 (385)
T ss_dssp GGEEECCCCCHHHHHHHHHHCSEEEECC-------TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-SH--HH
T ss_pred CCEEEEcCCCHHHHHHHHHhCcEEEECC-------ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-CH--HH
Confidence 578887654 47899999999999666 23679999999999998663 467888776 6677653 44 89
Q ss_pred HHHHHHHHhcCHHHHHHHHHHH
Q 004760 683 LAQNLRYLLKNPSVRERMAMEG 704 (732)
Q Consensus 683 La~aL~~LL~n~~~r~~m~~~~ 704 (732)
+++++..+++|+..+++|+.++
T Consensus 332 i~~ai~~ll~d~~~~~~m~~~~ 353 (385)
T 4hwg_A 332 VLQAVKTITEEHDNNKRTQGLV 353 (385)
T ss_dssp HHHHHHHHHTTCBTTBCCSCCC
T ss_pred HHHHHHHHHhChHHHHHhhccC
Confidence 9999999999988777665544
No 44
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.09 E-value=5.8e-09 Score=111.25 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=78.1
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~ 678 (732)
.++++|.+.++. +...+|..||+||. .+..+++.|||++|+|+|+....+ ..+.+++...|+..+..+.
T Consensus 285 ~~~~~v~~~~~~-p~~~lL~~~~~~v~------h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~~ 357 (400)
T 4amg_A 285 ELPANVRVVEWI-PLGALLETCDAIIH------HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSL 357 (400)
T ss_dssp CCCTTEEEECCC-CHHHHHTTCSEEEE------CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTTC
T ss_pred cCCCCEEEEeec-CHHHHhhhhhheec------cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCCc
Confidence 566788888877 45688999999883 345678999999999999965543 5556666567888776665
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQ 723 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~e 723 (732)
.+++|+++++|++.++++++-+.+ +...-+....++.+.+
T Consensus 358 ----~~~al~~lL~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 358 ----GAEQCRRLLDDAGLREAALRVRQE-MSEMPPPAETAAXLVA 397 (400)
T ss_dssp ----SHHHHHHHHHCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHH
T ss_pred ----hHHHHHHHHcCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 678899999999988776554443 3444466555555543
No 45
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.05 E-value=4e-08 Score=106.66 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=80.7
Q ss_pred CCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCCh----hhhhccCceEEEECCCCCc
Q 004760 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT----KEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 604 l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~----~EiVe~g~~Gll~~~~d~~ 679 (732)
..++|.+.++.+. ..++..||++|..+ ...++.|||++|+|+|+....+- .+.+++...|...+..+.+
T Consensus 266 ~~~~v~~~~~~~~-~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~ 338 (404)
T 3h4t_A 266 EGDDCLVVGEVNH-QVLFGRVAAVVHHG------GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPT 338 (404)
T ss_dssp CCTTEEEESSCCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCC
T ss_pred CCCCEEEecCCCH-HHHHhhCcEEEECC------cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCC
Confidence 4578999998754 78999999999554 44789999999999999866543 3345555678888776666
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVI 725 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~ 725 (732)
.+.+++++.++++ ++.+++|.+.+.... + -..+++++.+.+++
T Consensus 339 ~~~l~~ai~~ll~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 339 VESLSAALATALT-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHH
Confidence 7999999999999 887777765554322 1 34444555444443
No 46
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.02 E-value=1.8e-07 Score=101.48 Aligned_cols=115 Identities=11% Similarity=0.027 Sum_probs=85.1
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~ 678 (732)
.++++|.+.++.++ .++|..||++|..+ ...++.|||++|+|+|+....+ ..+.+++...|+.++..+.
T Consensus 282 ~~~~~v~~~~~~~~-~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~ 354 (415)
T 1iir_A 282 DDGADCFAIGEVNH-QVLFGRVAAVIHHG------GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIP 354 (415)
T ss_dssp SCGGGEEECSSCCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSC
T ss_pred CCCCCEEEeCcCCh-HHHHhhCCEEEeCC------ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCC
Confidence 34568999998866 46789999999644 4479999999999999987754 5566666678998877655
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
+.+.++++|.++ .|++.++++.+.+.+ +....-.++..+.++.+++
T Consensus 355 ~~~~l~~~i~~l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 355 TFDSLSAALATA-LTPETHARATAVAGT-----IRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp CHHHHHHHHHHH-TSHHHHHHHHHHHHH-----SCSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH-cCHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHHHh
Confidence 669999999999 998887777655543 3334445555555555544
No 47
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.97 E-value=2.5e-09 Score=101.90 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=73.0
Q ss_pred CCCcEEEccchhhHHHHH--HHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC----ChhhhhccCceEEEECCCC
Q 004760 604 LSKAMLWTPATTRVASLY--SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----GTKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 604 l~~~V~f~G~~~dv~~ly--saADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g----G~~EiVe~g~~Gll~~~~d 677 (732)
++++|.+.|+.++ ..++ .+||++|..+ .+.+++|||++|+|+|+.... +..+.+++...|++++..+
T Consensus 66 ~~~~v~~~~~~~~-~~~l~~~~ad~~I~~~------G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~ 138 (170)
T 2o6l_A 66 LGLNTRLYKWIPQ-NDLLGHPKTRAFITHG------GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNT 138 (170)
T ss_dssp CCTTEEEESSCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTT
T ss_pred CCCcEEEecCCCH-HHHhcCCCcCEEEEcC------CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEecccc
Confidence 4568999998865 5667 9999999543 568999999999999999874 3566777778999998775
Q ss_pred CcHHHHHHHHHHHhcCHHHHHHH
Q 004760 678 PGAQVLAQNLRYLLKNPSVRERM 700 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~~r~~m 700 (732)
.+.+.|+++|.+++.|++.++.+
T Consensus 139 ~~~~~l~~~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 139 MSSTDLLNALKRVINDPSYKENV 161 (170)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCHHHHHHH
Confidence 56699999999999998755554
No 48
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.86 E-value=4.3e-09 Score=121.22 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=88.6
Q ss_pred CCCCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhc------cCceEE-EE
Q 004760 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVE------HNVTGL-LH 673 (732)
Q Consensus 603 ~l~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe------~g~~Gl-l~ 673 (732)
|+.++|.|.|.. .+....|+.||+++.|+. .+.|++++|||+||+|||+....+...-+. -|..++ +.
T Consensus 496 GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp---y~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA 572 (631)
T 3q3e_A 496 YLGDSATAHPHSPYHQYLRILHNCDMMVNPFP---FGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA 572 (631)
T ss_dssp HHGGGEEEECCCCHHHHHHHHHTCSEEECCSS---SCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCccEEEcCCCCHHHHHHHHhcCcEEEeCCc---ccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec
Confidence 666799999975 577899999999999995 456999999999999999987776665543 234443 43
Q ss_pred CCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhh
Q 004760 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVER--MYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 674 ~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~--~ys~~~~~~~~~ev~~~~l 729 (732)
. +. +++++...+|..|++.+++|+++.++.... .|+ ...++|.+.|+.++
T Consensus 573 ~--d~--eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~ 624 (631)
T 3q3e_A 573 N--TV--DEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKL 624 (631)
T ss_dssp S--SH--HHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHH
T ss_pred C--CH--HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHH
Confidence 3 33 889999999999999999999988877533 343 34455555555443
No 49
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.71 E-value=5e-07 Score=106.28 Aligned_cols=203 Identities=14% Similarity=0.171 Sum_probs=137.6
Q ss_pred HHHHhCCC--CCCEEEEEEecCCCCCCHHH-HHHHHHHhHH--hCCCCchhhhhhccccccccccccccccccccccccc
Q 004760 433 VRKEMGLT--DQDMLVLSLSSINPGKGQLL-LVESAQLMIE--QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (732)
Q Consensus 433 ~R~~lgl~--~~~~lil~vGri~~~KG~d~-LLeA~~~l~~--~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~ 507 (732)
+++++|+. ++.++++++.|+..+|++++ ++..+.++.+ +.|..
T Consensus 504 l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~-------------------------------- 551 (796)
T 2c4m_A 504 ILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLT-------------------------------- 551 (796)
T ss_dssp HHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCC--------------------------------
T ss_pred HHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCC--------------------------------
Confidence 57888875 45688999999999999999 8999888864 33320
Q ss_pred cccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCch-hhhhHhhhhhccCCCCC
Q 004760 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK-QQQALKILIGSVGSKSN 586 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~-~~~~Lk~li~~~G~~~~ 586 (732)
......+++.|.|. ....-|.+|.
T Consensus 552 ------------------------------------------------~~~p~q~If~GKA~P~y~~aK~iIk------- 576 (796)
T 2c4m_A 552 ------------------------------------------------DIPARTVIFGAKAAPGYVRAKAIIK------- 576 (796)
T ss_dssp ------------------------------------------------SSCCEEEEEECCCCTTCHHHHHHHH-------
T ss_pred ------------------------------------------------CCCCeEEEEEecCCHhHHHHHHHHH-------
Confidence 00125678888884 3333333331
Q ss_pred ChhhHHHHHHHHHhcCCCCC--cEEEcc-ch-hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhh
Q 004760 587 KVPYVKEILEFLSQHSNLSK--AMLWTP-AT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE 662 (732)
Q Consensus 587 ~~~y~k~il~~l~~~l~l~~--~V~f~G-~~-~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~E 662 (732)
.+..+.+.+-+....++ +|.|+. +- +-...++.+||++++||+.-.|+.|+.-+=||..|++.|++-.|...|
T Consensus 577 ---~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvE 653 (796)
T 2c4m_A 577 ---LINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVE 653 (796)
T ss_dssp ---HHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHH
T ss_pred ---HHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEee
Confidence 11222233333445667 788775 43 456688999999999997559999999999999999999999999999
Q ss_pred hhcc--CceEEEECCCCCcHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 663 IVEH--NVTGLLHPPGHPGAQVLAQN---LRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 663 iVe~--g~~Gll~~~~d~~~e~La~a---L~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
+.++ ..||++|......++++... ......+|. .+++.+++. ...|+|..- ..|.++|..++.
T Consensus 654 i~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 654 IVDSVGEENAYIFGARVEELPALRESYKPYELYETVPG-LKRALDALD---NGTLNDNNS-GLFYDLKHSLIH 721 (796)
T ss_dssp HHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHHHHHTTT---SSSSCCTTC-CHHHHHHHHHHS
T ss_pred hhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHHHHHHHH---cCCCCCCCH-HHHHHHHHHHHh
Confidence 8765 36999997743433565542 223334553 344433333 356888765 668888877753
No 50
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.54 E-value=2.7e-06 Score=100.45 Aligned_cols=199 Identities=15% Similarity=0.168 Sum_probs=132.1
Q ss_pred HHHHhCCC--CCCEEEEEEecCCCCCCHHHH-HHHHHHhHH--hCCCCchhhhhhccccccccccccccccccccccccc
Q 004760 433 VRKEMGLT--DQDMLVLSLSSINPGKGQLLL-VESAQLMIE--QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (732)
Q Consensus 433 ~R~~lgl~--~~~~lil~vGri~~~KG~d~L-LeA~~~l~~--~~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~ 507 (732)
+++++|+. ++.++++++.|+..+|+++++ +..+.++.+ ..|..
T Consensus 538 l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~-------------------------------- 585 (824)
T 2gj4_A 538 LEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNK-------------------------------- 585 (824)
T ss_dssp HHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTS--------------------------------
T ss_pred HHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCC--------------------------------
Confidence 66778875 456889999999999999998 888887752 33330
Q ss_pred cccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCch-hhhhHhhhhhccCCCCC
Q 004760 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK-QQQALKILIGSVGSKSN 586 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~-~~~~Lk~li~~~G~~~~ 586 (732)
......+++.|.|. ....-|.+|.
T Consensus 586 ------------------------------------------------~~~p~q~If~GKA~P~y~~aK~iIk------- 610 (824)
T 2gj4_A 586 ------------------------------------------------FVVPRTVMIGGKAAPGYHMAKMIIK------- 610 (824)
T ss_dssp ------------------------------------------------CCCCEEEEEECCCCTTCHHHHHHHH-------
T ss_pred ------------------------------------------------CCCCEEEEEEEeCCHhHHHHHHHHH-------
Confidence 00124678888884 3333333331
Q ss_pred ChhhHHHHHHHHHhcCCCCC--cEEEcc-ch-hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhh
Q 004760 587 KVPYVKEILEFLSQHSNLSK--AMLWTP-AT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE 662 (732)
Q Consensus 587 ~~~y~k~il~~l~~~l~l~~--~V~f~G-~~-~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~E 662 (732)
.+..+.+.+.+...+++ +|.|+. +- +-...++.+||++++||+.-.|+.|+.-+=||..|++.|++-.|...|
T Consensus 611 ---li~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvE 687 (824)
T 2gj4_A 611 ---LITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVE 687 (824)
T ss_dssp ---HHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHH
T ss_pred ---HHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccch
Confidence 11222222323344566 788775 43 446688999999999998559999999999999999999999898888
Q ss_pred hhc--cCceEEEECCCCCcHHHHHHHHH-------HHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 004760 663 IVE--HNVTGLLHPPGHPGAQVLAQNLR-------YLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCM 729 (732)
Q Consensus 663 iVe--~g~~Gll~~~~d~~~e~La~aL~-------~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l 729 (732)
+.+ ...||+++... . +++ ..++ .+++++...+++-++. +...|+|..- +.|.++|..++
T Consensus 688 i~e~vG~~Ngf~FG~~-~--~ev-~~l~~~~~~a~~~Y~~~~~l~~v~d~i---~~g~fs~~~~-~~y~~ly~~l~ 755 (824)
T 2gj4_A 688 MAEEAGEENFFIFGMR-V--EDV-DRLDQRGYNAQEYYDRIPELRQIIEQL---SSGFFSPKQP-DLFKDIVNMLM 755 (824)
T ss_dssp HHHHHCGGGSEECSCC-H--HHH-HHHHHHCCCHHHHHHHCHHHHHHHHHH---HHTTTCTTST-TTTHHHHHHHH
T ss_pred hhhccCCCCEEEeCCc-H--HHH-HHHHHcCCCHHHHhcCCHHHHHHHHHH---HhCCCCCCCh-HHHHHHHHHHH
Confidence 875 34689999765 2 555 3332 2333333344444443 3467888665 66777776664
No 51
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.43 E-value=5.1e-06 Score=97.86 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=137.3
Q ss_pred HHHHhCCCC--CCEEEEEEecCCCCCCHHH-HHHHHHHhHHh--CCCCchhhhhhccccccccccccccccccccccccc
Q 004760 433 VRKEMGLTD--QDMLVLSLSSINPGKGQLL-LVESAQLMIEQ--EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (732)
Q Consensus 433 ~R~~lgl~~--~~~lil~vGri~~~KG~d~-LLeA~~~l~~~--~p~~~~~~~~~~~~i~~~~~~~~~~~~l~g~~ll~~ 507 (732)
+++++|+.- +.++++++.|+..+|++++ ++..+.++.+- .|..
T Consensus 514 l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~-------------------------------- 561 (796)
T 1l5w_A 514 VKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQA-------------------------------- 561 (796)
T ss_dssp HHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTC--------------------------------
T ss_pred HHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCC--------------------------------
Confidence 688888754 5688999999999999999 89988887541 2220
Q ss_pred cccccCcccccccchhhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEeccCch-hhhhHhhhhhccCCCCC
Q 004760 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK-QQQALKILIGSVGSKSN 586 (732)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~P~~~n~~~p~lf~~~~~~d~v~iG~~~~~~~LlivG~G~-~~~~Lk~li~~~G~~~~ 586 (732)
......+++.|.|. ....-|.+|.
T Consensus 562 ------------------------------------------------~~~p~q~If~GKA~P~y~~aK~iIk------- 586 (796)
T 1l5w_A 562 ------------------------------------------------DRVPRVFLFGAKAAPGYYLAKNIIF------- 586 (796)
T ss_dssp ------------------------------------------------CCCCEEEEEECCCCTTCHHHHHHHH-------
T ss_pred ------------------------------------------------CCCCeEEEEEecCChhHHHHHHHHH-------
Confidence 00125678888884 3333333331
Q ss_pred ChhhHHHHHHHHHhcCCCCC--cEEEcc-ch-hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhh
Q 004760 587 KVPYVKEILEFLSQHSNLSK--AMLWTP-AT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE 662 (732)
Q Consensus 587 ~~~y~k~il~~l~~~l~l~~--~V~f~G-~~-~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~E 662 (732)
.+..+.+.+-+....++ +|.|+. +- +-...++.+||++++||+.-.|+.|+.-+=||..|++.|++-.|...|
T Consensus 587 ---~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvE 663 (796)
T 1l5w_A 587 ---AINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVE 663 (796)
T ss_dssp ---HHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHH
T ss_pred ---HHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeee
Confidence 11222233333445667 788886 33 456688999999999997559999999999999999999999999999
Q ss_pred hhcc--CceEEEECCCCCcHHHHHH-------HHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 004760 663 IVEH--NVTGLLHPPGHPGAQVLAQ-------NLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 663 iVe~--g~~Gll~~~~d~~~e~La~-------aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~~~l~ 730 (732)
+.++ ..||+++.. +. +++.+ +......+| ..+++.+++. ...|+|..- ..|.++|..++.
T Consensus 664 i~e~vG~~NgF~FG~-~~--~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~---~g~fs~~~~-~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 664 IAEKVGEENIFIFGH-TV--EQVKAILAKGYDPVKWRKKDK-VLDAVLKELE---SGKYSDGDK-HAFDQMLHSIGK 732 (796)
T ss_dssp HHHHHCGGGSEECSC-CH--HHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHH---HTTTTTTCT-TTTHHHHHHTST
T ss_pred hhhccCCCcEEEecC-CH--HHHHHHHHcccCHHHHhhcCH-HHHHHHHHHH---cCCCCCCcH-HHHHHHHHHHhc
Confidence 8765 369999976 33 45442 222333455 3444544444 357998775 778888888764
No 52
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.84 E-value=4.3e-05 Score=82.59 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCCCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccCceEEEECCCCC
Q 004760 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g~~Gll~~~~d~ 678 (732)
.+++++.+.++.+ ..++|..||++|..+ ...++.|||++|+|+|+....+ ..+.+++...|+.++..+.
T Consensus 283 ~~~~~v~~~~~~~-~~~ll~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~ 355 (416)
T 1rrv_A 283 DDRDDCFAIDEVN-FQALFRRVAAVIHHG------SAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTP 355 (416)
T ss_dssp CCCTTEEEESSCC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCC
T ss_pred CCCCCEEEeccCC-hHHHhccCCEEEecC------ChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCC
Confidence 4556889999875 578899999999533 4579999999999999976643 4555666678888876665
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGR 705 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r 705 (732)
+.+.++++|.++ .|++.++++++.+.
T Consensus 356 ~~~~l~~~i~~l-~~~~~~~~~~~~~~ 381 (416)
T 1rrv_A 356 TFESLSAALTTV-LAPETRARAEAVAG 381 (416)
T ss_dssp CHHHHHHHHHHH-TSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHh-hCHHHHHHHHHHHH
Confidence 669999999999 99988887766544
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.77 E-value=0.0003 Score=82.84 Aligned_cols=121 Identities=11% Similarity=0.078 Sum_probs=89.3
Q ss_pred CC-CCcEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhh-----hhcc-CceEEEE
Q 004760 603 NL-SKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE-----IVEH-NVTGLLH 673 (732)
Q Consensus 603 ~l-~~~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~E-----iVe~-g~~Gll~ 673 (732)
|+ .++|+|.+.. .+....|..+|+++-|. .-+-+.+..||+.+|+|||+-....+.. ++.. |..-++.
T Consensus 576 gi~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~---p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia 652 (723)
T 4gyw_A 576 GLPQNRIIFSPVAPKEEHVRRGQLADVCLDTP---LCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIA 652 (723)
T ss_dssp TCCGGGEEEEECCCHHHHHHHGGGCSEEECCS---SSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBC
T ss_pred CCCcCeEEECCCCCHHHHHHHhCCCeEEeCCC---CcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCccccc
Confidence 55 3789999854 67778899999999877 3467899999999999999865322111 1111 1112222
Q ss_pred CCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhhc
Q 004760 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVER--MYLKKHMYKKLSQVIYKCMK 730 (732)
Q Consensus 674 ~~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~--~ys~~~~~~~~~ev~~~~l~ 730 (732)
.+. ++..+.-.+|..|++.+.++...-++.... -|+-..+++.+.+.|+.+.+
T Consensus 653 --~~~--~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~ 707 (723)
T 4gyw_A 653 --KNR--QEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWE 707 (723)
T ss_dssp --SSH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHH
T ss_pred --CCH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHH
Confidence 233 788888889999999999998888777654 68999999999999988753
No 54
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.07 E-value=0.01 Score=65.83 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=70.0
Q ss_pred CcEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccC-ceEEEECCCCC
Q 004760 606 KAMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHN-VTGLLHPPGHP 678 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g-~~Gll~~~~d~ 678 (732)
+++...++..+. .+|. ++|+||. -+..+++.||+++|+|+|+-...+ ....+++. ..|+.++.++.
T Consensus 325 ~~~~v~~w~pq~-~vL~h~~~~~fvt------h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 325 GYGMVVPWAPQA-EVLAHEAVGAFVT------HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp TTEEEESCCCHH-HHHTSTTEEEEEE------CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred CceEEecCCCHH-HHhcCCcCCEEEe------cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 567777877664 6888 6778883 346679999999999999986643 34455555 68888876666
Q ss_pred cHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 004760 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKV 708 (732)
Q Consensus 679 ~~e~La~aL~~LL~n~~~r~~m~~~~r~~v 708 (732)
+.+.+++++++++.|++ .++|.+++++..
T Consensus 398 ~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQEK-GKKLRENLRALR 426 (456)
T ss_dssp CHHHHHHHHHHHHHSHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCc-HHHHHHHHHHHH
Confidence 67999999999999985 455666555543
No 55
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=96.55 E-value=0.046 Score=60.94 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=70.4
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhhccC-ceEEEECCCCCc
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHN-VTGLLHPPGHPG 679 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiVe~g-~~Gll~~~~d~~ 679 (732)
.+++...++..+ ..+++.+++.++-++ +.-++++||+++|+|+|+-...+ ....+++. ..|+.++.++.+
T Consensus 326 ~~~~~vv~w~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~ 400 (454)
T 3hbf_A 326 KTKGKIVAWAPQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLT 400 (454)
T ss_dssp TTTEEEESSCCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCC
T ss_pred CCceEEEeeCCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCC
Confidence 457777788766 589999996555554 34578999999999999976643 33455553 688888776667
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~ 707 (732)
.+.+++++++++++++ .++|.+++++.
T Consensus 401 ~~~l~~av~~ll~~~~-~~~~r~~a~~l 427 (454)
T 3hbf_A 401 KESIKKALELTMSSEK-GGIMRQKIVKL 427 (454)
T ss_dssp HHHHHHHHHHHHSSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCh-HHHHHHHHHHH
Confidence 7999999999998852 34455554443
No 56
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=96.08 E-value=0.28 Score=58.44 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=61.2
Q ss_pred CCCC--cEEEccc--hhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc--CceEEEECC
Q 004760 603 NLSK--AMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHPP 675 (732)
Q Consensus 603 ~l~~--~V~f~G~--~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~--g~~Gll~~~ 675 (732)
.+.+ +|.|+.. ++-...++.+||+-...|..-.|+.|..-+=+|.-|.+.|+|--|...|+.++ ..|++++-.
T Consensus 683 ~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 683 SIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp GGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSEEESC
T ss_pred hhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEEEccC
Confidence 4555 7888874 36677899999999998886699999999999999999999999999999865 358888753
No 57
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=96.01 E-value=0.041 Score=61.10 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=69.8
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhh-ccCceEEEECCCCCc
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIV-EHNVTGLLHPPGHPG 679 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiV-e~g~~Gll~~~~d~~ 679 (732)
++++.+.++..+. .+|+.+++-++-++ +-.+++.||+++|+|+|+-...+ ....+ +....|+.++ .+.+
T Consensus 352 ~~~~~v~~~~pq~-~~L~h~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~~~ 425 (482)
T 2pq6_A 352 ADRGLIASWCPQD-KVLNHPSIGGFLTH----CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TNVK 425 (482)
T ss_dssp TTTEEEESCCCHH-HHHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SSCC
T ss_pred CCCEEEEeecCHH-HHhcCCCCCEEEec----CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-CCCC
Confidence 3577888887665 58977666333343 46679999999999999987643 33334 3456788876 5566
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004760 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKVE 709 (732)
Q Consensus 680 ~e~La~aL~~LL~n~~~r~~m~~~~r~~v~ 709 (732)
.+.++++|++++.|++ .++|.+++++..+
T Consensus 426 ~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~ 454 (482)
T 2pq6_A 426 REELAKLINEVIAGDK-GKKMKQKAMELKK 454 (482)
T ss_dssp HHHHHHHHHHHHTSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 7999999999999986 3566666655443
No 58
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=95.74 E-value=0.31 Score=53.90 Aligned_cols=87 Identities=21% Similarity=0.188 Sum_probs=61.5
Q ss_pred CcEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhh-hccCceEEEE-C---
Q 004760 606 KAMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEI-VEHNVTGLLH-P--- 674 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~Ei-Ve~g~~Gll~-~--- 674 (732)
+++...++..+. .+|. ++|+||.- +-.++++||+++|+|+|+-...+ .... ++....|+.+ .
T Consensus 332 ~~~~v~~w~pq~-~vL~h~~~~~fvth------~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~ 404 (463)
T 2acv_A 332 GKGMICGWAPQV-EVLAHKAIGGFVSH------CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404 (463)
T ss_dssp CSEEEESSCCHH-HHHHSTTEEEEEEC------CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCC
T ss_pred CCEEEEccCCHH-HHhCCCccCeEEec------CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccC
Confidence 456677777665 5676 67788833 46679999999999999987643 3344 4566688887 2
Q ss_pred CC--CCcHHHHHHHHHHHhc-CHHHHHH
Q 004760 675 PG--HPGAQVLAQNLRYLLK-NPSVRER 699 (732)
Q Consensus 675 ~~--d~~~e~La~aL~~LL~-n~~~r~~ 699 (732)
.+ +.+.+.++++|+++++ +++.+++
T Consensus 405 ~~~~~~~~~~l~~ai~~ll~~~~~~r~~ 432 (463)
T 2acv_A 405 KGSDVVAAEEIEKGLKDLMDKDSIVHKK 432 (463)
T ss_dssp TTCCCCCHHHHHHHHHHHTCTTCTHHHH
T ss_pred CCCccccHHHHHHHHHHHHhccHHHHHH
Confidence 23 4566999999999997 3454443
No 59
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=95.48 E-value=0.51 Score=50.21 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=36.7
Q ss_pred cEEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhh
Q 004760 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIV 664 (732)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiV 664 (732)
.+.+.|.. .++..+++.||++|.+- .|..-+ |.|+|+|+|+--....+...
T Consensus 243 ~~~l~g~~sl~e~~ali~~a~~~i~~D------sG~~Hl-Aaa~g~P~v~lfg~t~p~~~ 295 (349)
T 3tov_A 243 PIVATGKFQLGPLAAAMNRCNLLITND------SGPMHV-GISQGVPIVALYGPSNPFFY 295 (349)
T ss_dssp CEECTTCCCHHHHHHHHHTCSEEEEES------SHHHHH-HHTTTCCEEEECSSCCHHHH
T ss_pred cEEeeCCCCHHHHHHHHHhCCEEEECC------CCHHHH-HHhcCCCEEEEECCCCcccc
Confidence 35666644 78999999999999775 355555 99999999996443334433
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=95.11 E-value=0.12 Score=53.78 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=32.5
Q ss_pred EEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcC
Q 004760 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (732)
Q Consensus 608 V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td 656 (732)
+.+.|.. .++..+++.||++|.+.. |..-+ |.|+|+|+|+--
T Consensus 244 ~~l~g~~sl~e~~ali~~a~l~I~~Ds------g~~Hl-Aaa~g~P~v~lf 287 (348)
T 1psw_A 244 RNLAGETQLDQAVILIAACKAIVTNDS------GLMHV-AAALNRPLVALY 287 (348)
T ss_dssp EECTTTSCHHHHHHHHHTSSEEEEESS------HHHHH-HHHTTCCEEEEE
T ss_pred EeccCcCCHHHHHHHHHhCCEEEecCC------HHHHH-HHHcCCCEEEEE
Confidence 4566754 799999999999998763 33444 999999999853
No 61
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=94.76 E-value=0.19 Score=55.92 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=57.0
Q ss_pred EEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCC----hhhhh-ccCceEEEECCC---CCcH
Q 004760 609 LWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIV-EHNVTGLLHPPG---HPGA 680 (732)
Q Consensus 609 ~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG----~~EiV-e~g~~Gll~~~~---d~~~ 680 (732)
...++..+. .+++.+++.++-++ +--++++||+++|+|+|+-...+ ....+ +....|+..+.. ..+.
T Consensus 342 ~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~ 416 (480)
T 2vch_A 342 VIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRR 416 (480)
T ss_dssp EEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCH
T ss_pred EEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCH
Confidence 333455444 89999997554454 35578999999999999987643 33443 555678777654 4567
Q ss_pred HHHHHHHHHHhc
Q 004760 681 QVLAQNLRYLLK 692 (732)
Q Consensus 681 e~La~aL~~LL~ 692 (732)
+.++++|++++.
T Consensus 417 ~~l~~av~~vl~ 428 (480)
T 2vch_A 417 EEVARVVKGLME 428 (480)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999998
No 62
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=93.76 E-value=0.17 Score=52.98 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=39.4
Q ss_pred CcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCC
Q 004760 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (732)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~ 657 (732)
.++.+.++.++++++|++||+.|.+ .|.++.|++++|+|.|.-..
T Consensus 208 ~~v~v~~~~~~m~~~m~~aDlvI~~-------gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 208 NNIRLFIDHENIAKLMNESNKLIIS-------ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp SSEEEEESCSCHHHHHHTEEEEEEE-------SSHHHHHHHHTTCCEEEECC
T ss_pred CCEEEEeCHHHHHHHHHHCCEEEEC-------CcHHHHHHHHcCCCEEEEeC
Confidence 3799999999999999999999973 24799999999999998654
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=90.59 E-value=0.12 Score=52.54 Aligned_cols=73 Identities=7% Similarity=-0.004 Sum_probs=51.9
Q ss_pred cEEEccchhhHHHHHH-HcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCC----C----hhhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYS-AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----G----TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys-aADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~g----G----~~EiVe~g~~Gll~~~~d 677 (732)
++...++.+++..+|. .||++|.- +-..++.|++++|+|.|.-... . ..+.+++...+++. +
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIsh------aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~ 185 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVISH------AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---A 185 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEES------SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---C
T ss_pred eEEEeeccchHHHHHHhcCCEEEEC------CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---C
Confidence 5667788899999999 99999943 4677999999999999886543 2 13333332345555 2
Q ss_pred CcHHHHHHHHHHH
Q 004760 678 PGAQVLAQNLRYL 690 (732)
Q Consensus 678 ~~~e~La~aL~~L 690 (732)
+ +.|++++..+
T Consensus 186 ~--~~L~~~i~~l 196 (224)
T 2jzc_A 186 P--TETGLIAGLR 196 (224)
T ss_dssp S--CTTTHHHHHH
T ss_pred H--HHHHHHHHHH
Confidence 3 4577777776
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=88.23 E-value=4 Score=42.08 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=48.7
Q ss_pred EEEccch--hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhhcc-CceEEEEC-----CCCCc
Q 004760 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH-NVTGLLHP-----PGHPG 679 (732)
Q Consensus 608 V~f~G~~--~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiVe~-g~~Gll~~-----~~d~~ 679 (732)
+.+.|.. .++..+++.||++|.+- -|..-+ |.|+|+|+|+--....++.... +....++. ..+.+
T Consensus 236 ~~l~g~~sl~el~ali~~a~l~I~~D------SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~ 308 (326)
T 2gt1_A 236 VEVLPKMSLEGVARVLAGAKFVVSVD------TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLT 308 (326)
T ss_dssp EEECCCCCHHHHHHHHHTCSEEEEES------SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCC
T ss_pred ccccCCCCHHHHHHHHHhCCEEEecC------CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCC
Confidence 4566643 79999999999999775 345555 7789999998533222222211 11112221 12445
Q ss_pred HHHHHHHHHHHhcC
Q 004760 680 AQVLAQNLRYLLKN 693 (732)
Q Consensus 680 ~e~La~aL~~LL~n 693 (732)
+++..+++.+++++
T Consensus 309 ~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 309 ANAVKQFIEENAEK 322 (326)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 57788888777764
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=83.15 E-value=2.8 Score=48.87 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=61.7
Q ss_pred CCcEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChhhhh----------ccCceEEEEC
Q 004760 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIV----------EHNVTGLLHP 674 (732)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~EiV----------e~g~~Gll~~ 674 (732)
.+.+.-.....++.++|..||++|.= ++-++.|++..++|||-...- ..+.. .+...|-++.
T Consensus 597 ~~~~~~~~~~~di~~ll~~aD~lITD-------ySSv~fD~~~l~kPiif~~~D-~~~Y~~~~rg~y~d~~~~~pg~~~~ 668 (729)
T 3l7i_A 597 ENFAIDVSNYNDVSELFLISDCLITD-------YSSVMFDYGILKRPQFFFAYD-IDKYDKGLRGFYMNYMEDLPGPIYT 668 (729)
T ss_dssp TTTEEECTTCSCHHHHHHTCSEEEES-------SCTHHHHHGGGCCCEEEECTT-TTTTTSSCCSBSSCTTSSSSSCEES
T ss_pred CCcEEeCCCCcCHHHHHHHhCEEEee-------chHHHHhHHhhCCCEEEecCC-HHHHhhccCCcccChhHhCCCCeEC
Confidence 34555555556899999999999942 455899999999999987321 11111 1112333333
Q ss_pred CCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004760 675 PGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKVERMYLKKHMYKKLSQVIY 726 (732)
Q Consensus 675 ~~d~~~e~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys~~~~~~~~~ev~~ 726 (732)
+.++|.++|......+....+..+.-++..-. |.-.+.++++.+.+-
T Consensus 669 ----~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~dg~as~ri~~~i~ 715 (729)
T 3l7i_A 669 ----EPYGLAKELKNLDKVQQQYQEKIDAFYDRFCS-VDNGKASQYIGDLIH 715 (729)
T ss_dssp ----SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-TCCSCHHHHHHHHHH
T ss_pred ----CHHHHHHHHhhhhccchhHHHHHHHHHHHhCC-ccCChHHHHHHHHHH
Confidence 23788888887765333322222222222211 333345555555543
No 66
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=74.43 E-value=7.2 Score=41.47 Aligned_cols=74 Identities=20% Similarity=0.136 Sum_probs=47.2
Q ss_pred hhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC-----CCChhHHHhCCcEEEEcCCCc-------h
Q 004760 238 RFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR-----GGLMPELARRKIKVLEDRGEP-------S 305 (732)
Q Consensus 238 ~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~-----g~l~~el~~~gI~v~~~~~~~-------~ 305 (732)
..|++.||+++ |.+-....+.++|.+.||+|.+|+...+ .+..+...+.||+++...... .
T Consensus 18 ~~~~~mrIvf~-------G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~ 90 (329)
T 2bw0_A 18 LYFQSMKIAVI-------GQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPD 90 (329)
T ss_dssp ---CCCEEEEE-------CCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHH
T ss_pred ccCCCCEEEEE-------cCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHH
Confidence 34677899888 3455555667788888999987774221 223344567899998765422 1
Q ss_pred ---hhhhcCccEEEeC
Q 004760 306 ---FKTSMKADLVIAG 318 (732)
Q Consensus 306 ---~~~~~k~DlVia~ 318 (732)
..+..+||++++-
T Consensus 91 ~~~~l~~~~~Dliv~a 106 (329)
T 2bw0_A 91 VVAKYQALGAELNVLP 106 (329)
T ss_dssp HHHHHHTTCCSEEEES
T ss_pred HHHHHHhcCCCEEEEe
Confidence 2347899999553
No 67
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=71.49 E-value=1.3e+02 Score=33.19 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH-hCCcEEEEcCCCch--hhh--hcCccEEEeCCchhh-HHHHHH
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGEPS--FKT--SMKADLVIAGSAVCA-TWIDQY 329 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~-~~gI~v~~~~~~~~--~~~--~~k~DlVia~Sav~~-~~i~~~ 329 (732)
|+...-..||+.|.+.||+|+++- .+....+.+. ..++.++.-.+... +.. -.++|++++-+.--. ..+...
T Consensus 10 G~G~vG~~la~~L~~~~~~v~vId--~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~ 87 (461)
T 4g65_A 10 GAGQVGGTLAENLVGENNDITIVD--KDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDETNMAACQ 87 (461)
T ss_dssp CCSHHHHHHHHHTCSTTEEEEEEE--SCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEE--CCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChHHHHHHHH
Confidence 777888899999999999999885 3333444554 46888887655433 333 468999988654322 223344
Q ss_pred HHhhcCCCccEEEEE
Q 004760 330 ITRFPAGGSQVVWWI 344 (732)
Q Consensus 330 i~~~~~~~~~ivw~i 344 (732)
+++...+.+.++..+
T Consensus 88 ~Ak~~~~~~~~iar~ 102 (461)
T 4g65_A 88 VAFTLFNTPNRIARI 102 (461)
T ss_dssp HHHHHHCCSSEEEEC
T ss_pred HHHHhcCCccceeEe
Confidence 555555667677766
No 68
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=68.87 E-value=21 Score=37.29 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=48.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~ 322 (732)
+||.+| ++||+..+ -+|..|.++|++|++.=.....+...+|+..||++..-.....+. ...+|+|+...++.
T Consensus 5 ~~i~~i----GiGg~Gms--~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~-~~~~d~vV~Spgi~ 77 (326)
T 3eag_A 5 KHIHII----GIGGTFMG--GLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLD-EFKADVYVIGNVAK 77 (326)
T ss_dssp CEEEEE----SCCSHHHH--HHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGG-SCCCSEEEECTTCC
T ss_pred cEEEEE----EECHHHHH--HHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcC-CCCCCEEEECCCcC
Confidence 566554 67777643 477888999999998763333345678889999988543222121 03689999887764
No 69
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=65.88 E-value=19 Score=33.80 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=53.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH--hCCcEEEEcCCCch---hhh-hcCccEEEe
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA--RRKIKVLEDRGEPS---FKT-SMKADLVIA 317 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~--~~gI~v~~~~~~~~---~~~-~~k~DlVia 317 (732)
|++.|+..-+..|-.....+||..|++.|+.|.++-+...+.+...+. ..++.++....... +.. ..++|+|+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 678888888888999999999999999999999998766555544432 33466665543111 111 346888877
Q ss_pred CC
Q 004760 318 GS 319 (732)
Q Consensus 318 ~S 319 (732)
.+
T Consensus 82 D~ 83 (206)
T 4dzz_A 82 DG 83 (206)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 70
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=64.96 E-value=61 Score=27.85 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=57.3
Q ss_pred cEEEccchhhHHHHHHH-------cCEEEEccCCCCCCCcHHHHHHHHc-------CCCEEEcCC-CCh---hhhhccC-
Q 004760 607 AMLWTPATTRVASLYSA-------ADVYVINSQGLGETFGRVTIEAMAF-------GVPVLGTDA-GGT---KEIVEHN- 667 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa-------ADv~V~pS~~~~Egfg~vilEAMA~-------GlPVI~td~-gG~---~EiVe~g- 667 (732)
.|......++...++.. .|++++-.. +.+.-|..+++.+.. .+|+|..-. ... .+.+..+
T Consensus 37 ~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~ 115 (146)
T 3ilh_A 37 EIQSVTSGNAAINKLNELYAAGRWPSIICIDIN-MPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDW 115 (146)
T ss_dssp EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS-CSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSS
T ss_pred eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC-CCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCC
Confidence 45555555566666655 788888665 355667778877654 667766433 332 2334556
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhcCHH
Q 004760 668 VTGLLHPPGHPGAQVLAQNLRYLLKNPS 695 (732)
Q Consensus 668 ~~Gll~~~~d~~~e~La~aL~~LL~n~~ 695 (732)
..+++..+-+. +.|.++|........
T Consensus 116 ~~~~l~KP~~~--~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 116 VDYYVSKPLTA--NALNNLYNKVLNEGH 141 (146)
T ss_dssp CCEEECSSCCH--HHHHHHHHHHHCC--
T ss_pred cceeeeCCCCH--HHHHHHHHHHHHhcc
Confidence 78899998887 999999999887543
No 71
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=63.98 E-value=24 Score=34.10 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=45.5
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCc-EEEEcCCCchhhh-hcCccEEEeC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKI-KVLEDRGEPSFKT-SMKADLVIAG 318 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI-~v~~~~~~~~~~~-~~k~DlVia~ 318 (732)
.+++|++. ||+.-.=..++++|++.|++|.+++ +...-.+++...++ .++..+....+.. -..+|+||.+
T Consensus 20 ~~~~ilVt------GatG~iG~~l~~~L~~~G~~V~~~~--R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 20 QGMRVLVV------GANGKVARYLLSELKNKGHEPVAMV--RNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp -CCEEEEE------TTTSHHHHHHHHHHHHTTCEEEEEE--SSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred CCCeEEEE------CCCChHHHHHHHHHHhCCCeEEEEE--CChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 34665543 3333444577889999999998887 33334556666788 8877665422322 3379999776
Q ss_pred Cc
Q 004760 319 SA 320 (732)
Q Consensus 319 Sa 320 (732)
..
T Consensus 92 ag 93 (236)
T 3e8x_A 92 AG 93 (236)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 72
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=63.80 E-value=18 Score=39.59 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=49.7
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC--CCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK--RGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~--~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~ 318 (732)
.+++|++| +.||+..+ +|+.|.++||+|++.=... ..+....|+..||++..-.....+. ...+|+|+.+
T Consensus 8 ~~k~v~vi----G~G~sG~s---~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~-~~~~d~vv~s 79 (451)
T 3lk7_A 8 ENKKVLVL----GLARSGEA---AARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELL-DEDFCYMIKN 79 (451)
T ss_dssp TTCEEEEE----CCTTTHHH---HHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGG-GSCEEEEEEC
T ss_pred CCCEEEEE----eeCHHHHH---HHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhh-cCCCCEEEEC
Confidence 45788775 55666655 4899999999999875321 1234567888999988654433222 1128999998
Q ss_pred Cchh
Q 004760 319 SAVC 322 (732)
Q Consensus 319 Sav~ 322 (732)
.++.
T Consensus 80 pgi~ 83 (451)
T 3lk7_A 80 PGIP 83 (451)
T ss_dssp TTSC
T ss_pred CcCC
Confidence 7764
No 73
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=62.73 E-value=70 Score=27.07 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCCCcEEEccchhhHHHHHHH---------cCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEEc-CCCC---hhhhh
Q 004760 603 NLSKAMLWTPATTRVASLYSA---------ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLGT-DAGG---TKEIV 664 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysa---------ADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~t-d~gG---~~EiV 664 (732)
+....|.......+....+.. .|++++-.. +.+.-|.-+++.+. ..+|+|.- .... ..+.+
T Consensus 26 ~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~-~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~ 104 (140)
T 1k68_A 26 TVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLN-LPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSY 104 (140)
T ss_dssp SSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSS-CSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHH
T ss_pred CCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecC-CCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHH
Confidence 443356666655666666654 788888665 34455677777775 46787764 3333 23345
Q ss_pred ccCceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 665 EHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 665 e~g~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
+.|..+++..+-+. +.|...+..++.
T Consensus 105 ~~g~~~~l~kP~~~--~~l~~~i~~~~~ 130 (140)
T 1k68_A 105 DLHVNCYITKSANL--SQLFQIVKGIEE 130 (140)
T ss_dssp HTTCSEEEECCSSH--HHHHHHHHHHHH
T ss_pred HhchhheecCCCCH--HHHHHHHHHHHH
Confidence 56888999998887 899999988764
No 74
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=61.87 E-value=57 Score=28.69 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=57.7
Q ss_pred CCCCcEEEccchhhHHHHHH-----------HcCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEc-CCCC---hhh
Q 004760 603 NLSKAMLWTPATTRVASLYS-----------AADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DAGG---TKE 662 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lys-----------aADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~t-d~gG---~~E 662 (732)
+....|.......+....+. ..|++++-.. +.+.-|.-+++.+.. .+|+|.. .... ..+
T Consensus 28 g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~-l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 106 (152)
T 3heb_A 28 GVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN-LPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQR 106 (152)
T ss_dssp TCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB-CSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHH
T ss_pred CCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC-CCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHH
Confidence 55445666655556666663 4678887654 355567888888764 6777764 3333 233
Q ss_pred hhccCceEEEECCCCCcHHHHHHHHHHHh
Q 004760 663 IVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (732)
Q Consensus 663 iVe~g~~Gll~~~~d~~~e~La~aL~~LL 691 (732)
.++.|..+++..+-+. +.|.++|.++.
T Consensus 107 ~~~~g~~~~l~KP~~~--~~l~~~i~~~~ 133 (152)
T 3heb_A 107 CYDLGANVYITKPVNY--ENFANAIRQLG 133 (152)
T ss_dssp HHHTTCSEEEECCSSH--HHHHHHHHHHH
T ss_pred HHHCCCcEEEeCCCCH--HHHHHHHHHHH
Confidence 4567889999998887 89999988873
No 75
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=61.09 E-value=72 Score=27.49 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=56.8
Q ss_pred cEEEccchhhHHHHHH----HcCEEEEccCCCCCCCcHHHHHHHHc---CCCEEEc-CCCC---hhhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYS----AADVYVINSQGLGETFGRVTIEAMAF---GVPVLGT-DAGG---TKEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys----aADv~V~pS~~~~Egfg~vilEAMA~---GlPVI~t-d~gG---~~EiVe~g~~Gll~~~ 675 (732)
.|......++....+. ..|++++-.. +.+.-|..+++.+.. .+|+|.- .... ..+.+..|..+++..+
T Consensus 29 ~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp 107 (143)
T 3jte_A 29 EVLTASSSTEGLRIFTENCNSIDVVITDMK-MPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKP 107 (143)
T ss_dssp EEEEESSHHHHHHHHHHTTTTCCEEEEESC-CSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESS
T ss_pred eEEEeCCHHHHHHHHHhCCCCCCEEEEeCC-CCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCC
Confidence 4554444455555555 5788888665 355567777766643 6777764 3333 3345567889999998
Q ss_pred CCCcHHHHHHHHHHHhcCHH
Q 004760 676 GHPGAQVLAQNLRYLLKNPS 695 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n~~ 695 (732)
-+. +.|..+|..+++...
T Consensus 108 ~~~--~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 108 VTA--QDLSIAINNAINRKK 125 (143)
T ss_dssp CCH--HHHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHHHH
Confidence 877 999999998876433
No 76
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=60.52 E-value=8.2 Score=38.88 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=45.9
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH-hCCcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~-~~gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
.+++||+| |+..+....|+.|.+.|++|+|+....... ..++. ..++.++........ -..+|+||+.+
T Consensus 30 ~gk~VLVV-------GgG~va~~ka~~Ll~~GA~VtVvap~~~~~-l~~l~~~~~i~~i~~~~~~~d--L~~adLVIaAT 99 (223)
T 3dfz_A 30 KGRSVLVV-------GGGTIATRRIKGFLQEGAAITVVAPTVSAE-INEWEAKGQLRVKRKKVGEED--LLNVFFIVVAT 99 (223)
T ss_dssp TTCCEEEE-------CCSHHHHHHHHHHGGGCCCEEEECSSCCHH-HHHHHHTTSCEEECSCCCGGG--SSSCSEEEECC
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHHCCCEEEEECCCCCHH-HHHHHHcCCcEEEECCCCHhH--hCCCCEEEECC
Confidence 35788888 444677888899999999999997432222 23333 445777654443322 23689998876
Q ss_pred ch
Q 004760 320 AV 321 (732)
Q Consensus 320 av 321 (732)
..
T Consensus 100 ~d 101 (223)
T 3dfz_A 100 ND 101 (223)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 77
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=60.49 E-value=19 Score=38.11 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=47.5
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC---C--------CChhHHHhCCcEEEEcCCCc--h-
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR---G--------GLMPELARRKIKVLEDRGEP--S- 305 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~---g--------~l~~el~~~gI~v~~~~~~~--~- 305 (732)
|.+.||+|+ |.+-......++|.+.||+|..|+...+ | +..+...+.||+++...... .
T Consensus 5 ~~~mrivf~-------Gt~~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~ 77 (318)
T 3q0i_A 5 SQSLRIVFA-------GTPDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDES 77 (318)
T ss_dssp --CCEEEEE-------CCSHHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHH
T ss_pred ccCCEEEEE-------ecCHHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHH
Confidence 446789988 6666666777888889999988875321 1 12344568999998643322 1
Q ss_pred --hhhhcCccEEEeC
Q 004760 306 --FKTSMKADLVIAG 318 (732)
Q Consensus 306 --~~~~~k~DlVia~ 318 (732)
...+.+||++++-
T Consensus 78 ~~~l~~~~~Dliv~~ 92 (318)
T 3q0i_A 78 KQQLAALNADLMVVV 92 (318)
T ss_dssp HHHHHTTCCSEEEES
T ss_pred HHHHHhcCCCEEEEe
Confidence 3447899999653
No 78
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=59.97 E-value=81 Score=26.85 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=48.2
Q ss_pred HcCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEc-CCCCh---hhhhccCceEEEECCCCCcHHHHHHHHHHHhcC
Q 004760 623 AADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 623 aADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~t-d~gG~---~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n 693 (732)
..|++++-.. +.+.-|..+++.+.. .+|+|.. ..... .+.++.|..+++..|-+. +.|.+.+..++..
T Consensus 51 ~~dlvi~D~~-~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~--~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 51 DTKVLITDWN-MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTP--QVLKEKLEVVLGT 127 (129)
T ss_dssp TCCEEEECSC-CSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCH--HHHHHHHHHHHCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCH--HHHHHHHHHHhcc
Confidence 3688887554 355567788888753 5788764 33333 334567889999999888 9999999988764
No 79
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=59.65 E-value=61 Score=28.08 Aligned_cols=87 Identities=7% Similarity=0.096 Sum_probs=56.9
Q ss_pred CCCCcEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEcCC-CC---hhhhhccCceEE
Q 004760 603 NLSKAMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGTDA-GG---TKEIVEHNVTGL 671 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~td~-gG---~~EiVe~g~~Gl 671 (732)
+....|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|+|.-.. .. ..+.+..|..++
T Consensus 29 ~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~-l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~ 107 (144)
T 3kht_A 29 DIHCQLEFVDNGAKALYQVQQAKYDLIILDIG-LPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSV 107 (144)
T ss_dssp TCCEEEEEESSHHHHHHHHTTCCCSEEEECTT-CGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEE
T ss_pred CCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC-CCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 443335555555555555544 578887654 344567778887764 678877433 32 233456788999
Q ss_pred EECCC-CCcHHHHHHHHHHHhc
Q 004760 672 LHPPG-HPGAQVLAQNLRYLLK 692 (732)
Q Consensus 672 l~~~~-d~~~e~La~aL~~LL~ 692 (732)
+..+. +. +.|.++|..+++
T Consensus 108 l~Kp~~~~--~~l~~~i~~~l~ 127 (144)
T 3kht_A 108 VDKSSNNV--TDFYGRIYAIFS 127 (144)
T ss_dssp EECCTTSH--HHHHHHHHHHHH
T ss_pred EECCCCcH--HHHHHHHHHHHH
Confidence 99988 77 899999988865
No 80
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=56.07 E-value=97 Score=26.55 Aligned_cols=87 Identities=11% Similarity=0.185 Sum_probs=57.2
Q ss_pred CCCCcEEEccchhhHHHHHH------------HcCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEEc-CCCC---hh
Q 004760 603 NLSKAMLWTPATTRVASLYS------------AADVYVINSQGLGETFGRVTIEAMA-----FGVPVLGT-DAGG---TK 661 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lys------------aADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~t-d~gG---~~ 661 (732)
+....|......++....+. ..|++++-.. +.+.-|.-+++.+. ..+|+|.. .... ..
T Consensus 30 g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~ 108 (149)
T 1k66_A 30 GVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLN-LPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIE 108 (149)
T ss_dssp TBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSC-CSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHH
T ss_pred CCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECC-CCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHH
Confidence 44335666655566666665 3688887654 34445677777775 46787764 3333 23
Q ss_pred hhhccCceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 662 EIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 662 EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
+.++.|..+++..+-+. +.|...+..+++
T Consensus 109 ~~~~~g~~~~l~kP~~~--~~l~~~i~~~~~ 137 (149)
T 1k66_A 109 ICYSYSISSYIVKPLEI--DRLTETVQTFIK 137 (149)
T ss_dssp HHHHTTCSEEEECCSSH--HHHHHHHHHHHH
T ss_pred HHHHCCCCEEEeCCCCH--HHHHHHHHHHHH
Confidence 34467888999998877 899999888764
No 81
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=55.87 E-value=18 Score=38.18 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=46.4
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-----------CChhHHHhCCcEEEEcCCCch----
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEPS---- 305 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-----------~l~~el~~~gI~v~~~~~~~~---- 305 (732)
|+.||+|+ |.+-......++|.+.||+|..|+...+. +..+...+.||+|+.......
T Consensus 1 ~~mrivf~-------Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 1 MSLKIVFA-------GTPQFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCCEEEEE-------ECSGGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CCcEEEEE-------CCCHHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 35678887 55556666678888899999888753211 112344689999986543321
Q ss_pred -hhhhcCccEEEeC
Q 004760 306 -FKTSMKADLVIAG 318 (732)
Q Consensus 306 -~~~~~k~DlVia~ 318 (732)
...+.+||++++-
T Consensus 74 ~~l~~~~~Dliv~~ 87 (314)
T 3tqq_A 74 EKLIAMNADVMVVV 87 (314)
T ss_dssp HHHHTTCCSEEEEE
T ss_pred HHHHhcCCCEEEEc
Confidence 3447899999553
No 82
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=54.15 E-value=13 Score=39.53 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=39.0
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG 302 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~ 302 (732)
||+++.. ...|=-.-++.||++|+++||+|++++.. ...+.+...|++++....
T Consensus 2 rIl~~~~--~~~GH~~p~l~la~~L~~~Gh~V~~~~~~---~~~~~v~~~g~~~~~~~~ 55 (416)
T 1rrv_A 2 RVLLSVC--GTRGDVEIGVALADRLKALGVQTRMCAPP---AAEERLAEVGVPHVPVGL 55 (416)
T ss_dssp EEEEEEE--SCHHHHHHHHHHHHHHHHTTCEEEEEECG---GGHHHHHHHTCCEEECSC
T ss_pred eEEEEec--CCCccHHHHHHHHHHHHHCCCeEEEEeCH---HHHHHHHHcCCeeeecCC
Confidence 6777643 34555666899999999999999999833 244556677888876554
No 83
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=54.09 E-value=23 Score=35.42 Aligned_cols=74 Identities=18% Similarity=0.057 Sum_probs=45.0
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--h---hh-----hcC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--F---KT-----SMK 311 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--~---~~-----~~k 311 (732)
..|+++|+.. +.-.=..+|++|++.|++|.++.- ....+..++...++.++..+.... + .. ..+
T Consensus 26 ~~k~vlVTGa-----s~gIG~aia~~l~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 99 (260)
T 3gem_A 26 SSAPILITGA-----SQRVGLHCALRLLEHGHRVIISYR-TEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSS 99 (260)
T ss_dssp -CCCEEESST-----TSHHHHHHHHHHHHTTCCEEEEES-SCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEECC-----CCHHHHHHHHHHHHCCCEEEEEeC-ChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3456677533 223345788899999999888762 333345566666777766554332 1 11 247
Q ss_pred ccEEEeCCch
Q 004760 312 ADLVIAGSAV 321 (732)
Q Consensus 312 ~DlVia~Sav 321 (732)
+|++|.+..+
T Consensus 100 iD~lv~nAg~ 109 (260)
T 3gem_A 100 LRAVVHNASE 109 (260)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCc
Confidence 9999887643
No 84
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=52.81 E-value=1.2e+02 Score=26.77 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=52.5
Q ss_pred EccchhhHHHHHH----HcCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEcCC-CC---hhhhhccCceEEEECCCCC
Q 004760 610 WTPATTRVASLYS----AADVYVINSQGLGETFGRVTIEAMA---FGVPVLGTDA-GG---TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 610 f~G~~~dv~~lys----aADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~td~-gG---~~EiVe~g~~Gll~~~~d~ 678 (732)
......+....+. ..|++++-.. +.+.-|..+++.+. ..+|||.... .. ..+.+..|..+++..+-+.
T Consensus 66 ~~~~~~~al~~l~~~~~~~dliilD~~-l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~ 144 (157)
T 3hzh_A 66 TAADGEEAVIKYKNHYPNIDIVTLXIT-MPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDR 144 (157)
T ss_dssp EESSHHHHHHHHHHHGGGCCEEEECSS-CSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCH
T ss_pred EECCHHHHHHHHHhcCCCCCEEEEecc-CCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCH
Confidence 3333445445544 3488888765 35556677777664 3678876433 32 3344567889999998887
Q ss_pred cHHHHHHHHHHHhc
Q 004760 679 GAQVLAQNLRYLLK 692 (732)
Q Consensus 679 ~~e~La~aL~~LL~ 692 (732)
+.|.++|..+++
T Consensus 145 --~~l~~~i~~~l~ 156 (157)
T 3hzh_A 145 --AKVLQRVMSVFV 156 (157)
T ss_dssp --HHHHHHHHHTTC
T ss_pred --HHHHHHHHHHhc
Confidence 999999988765
No 85
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=48.99 E-value=52 Score=29.95 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=47.8
Q ss_pred ccccccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCCC-C---------------hhHH
Q 004760 228 GTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRGG-L---------------MPEL 290 (732)
Q Consensus 228 ~~~~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~-~G~~V~vv~l~~~g~-l---------------~~el 290 (732)
-.|++.....+-|+-++||+.++. .+.....+++.|..|++ .|.++.++....... . ...+
T Consensus 10 ~~~~~~~~~~~~mm~~~ILv~vD~--~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (155)
T 3dlo_A 10 HSSGRENLYFQGMIYMPIVVAVDK--KSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSII 87 (155)
T ss_dssp ------------CCCCCEEEECCS--SSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcccccccCeEEEEECC--CCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 358888888888999999998754 14455667777777766 478888887644321 1 1233
Q ss_pred HhCCcEEE----EcCCCch-----hhhhcCccEEEeCC
Q 004760 291 ARRKIKVL----EDRGEPS-----FKTSMKADLVIAGS 319 (732)
Q Consensus 291 ~~~gI~v~----~~~~~~~-----~~~~~k~DlVia~S 319 (732)
...|+++- ...+... +.+..++|+|+.++
T Consensus 88 ~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 88 RKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp HHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEEC
T ss_pred HhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECC
Confidence 45666542 2223332 33466999998875
No 86
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=48.55 E-value=1.3e+02 Score=25.73 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=55.0
Q ss_pred EEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEcCCCChh-----hhhccCceEEEECC
Q 004760 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGTDAGGTK-----EIVEHNVTGLLHPP 675 (732)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~td~gG~~-----EiVe~g~~Gll~~~ 675 (732)
|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|+|.-...... +.+..|..+++..+
T Consensus 33 v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP 111 (140)
T 3grc_A 33 SDMVHSAAQALEQVARRPYAAMTVDLN-LPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKP 111 (140)
T ss_dssp EEEECSHHHHHHHHHHSCCSEEEECSC-CSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSS
T ss_pred EEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCC
Confidence 5444444454455443 578887655 355567788887764 6788775443222 33456788999998
Q ss_pred CCCcHHHHHHHHHHHhcC
Q 004760 676 GHPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n 693 (732)
-+. +.|..+|..+++.
T Consensus 112 ~~~--~~l~~~i~~~l~~ 127 (140)
T 3grc_A 112 IDE--NLLILSLHRAIDN 127 (140)
T ss_dssp CCH--HHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHh
Confidence 877 9999999988763
No 87
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=48.20 E-value=32 Score=38.26 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=48.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~ 322 (732)
++|.+| ++||+..+. +|+.|.++|++|++.= .+..+...+|+..||++..-.....+ ..+|+|+.+.++.
T Consensus 23 ~~v~vi----GiG~sG~s~--~A~~l~~~G~~V~~~D-~~~~~~~~~l~~~gi~~~~g~~~~~~---~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 23 RHIHFV----GIGGAGMGG--IAEVLANEGYQISGSD-LAPNSVTQHLTALGAQIYFHHRPENV---LDASVVVVSTAIS 92 (494)
T ss_dssp CEEEEE----TTTSTTHHH--HHHHHHHTTCEEEEEC-SSCCHHHHHHHHTTCEEESSCCGGGG---TTCSEEEECTTSC
T ss_pred CEEEEE----EEcHhhHHH--HHHHHHhCCCeEEEEE-CCCCHHHHHHHHCCCEEECCCCHHHc---CCCCEEEECCCCC
Confidence 566554 667766543 5889999999999764 22334567788999998754222222 3599999988764
Q ss_pred h
Q 004760 323 A 323 (732)
Q Consensus 323 ~ 323 (732)
.
T Consensus 93 ~ 93 (494)
T 4hv4_A 93 A 93 (494)
T ss_dssp T
T ss_pred C
Confidence 3
No 88
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=47.56 E-value=1.4e+02 Score=26.02 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=55.9
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc---CCCEEEc-CCCC---hhhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF---GVPVLGT-DAGG---TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~---GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~d 677 (732)
.|......++....+.. .|++++-.. +.+.-|..+++.+.. .+|+|.- .... ..+.+..|..+++..+-+
T Consensus 48 ~v~~~~~~~~al~~l~~~~~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~ 126 (150)
T 4e7p_A 48 SVLQAKNGQEAIQLLEKESVDIAILDVE-MPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERS 126 (150)
T ss_dssp EEEEESSHHHHHHHHTTSCCSEEEECSS-CSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSC
T ss_pred EEEEECCHHHHHHHhhccCCCEEEEeCC-CCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCC
Confidence 34444444555555543 578887665 355567777777654 5777664 3332 344556788999999888
Q ss_pred CcHHHHHHHHHHHhcC
Q 004760 678 PGAQVLAQNLRYLLKN 693 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n 693 (732)
. +.|..+|..+++.
T Consensus 127 ~--~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 127 I--ADLMQTLHTVLEG 140 (150)
T ss_dssp H--HHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHcC
Confidence 7 9999999998864
No 89
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=46.96 E-value=56 Score=36.58 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=50.2
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCc
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSA 320 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sa 320 (732)
..++|.+| ++||+..+ -+|..|.++|++|++.=.....+...+|+..||++..-.....+ ...+|+|+.+.+
T Consensus 18 ~~~~i~~i----GiGg~Gms--~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~--~~~~d~vV~Spg 89 (524)
T 3hn7_A 18 QGMHIHIL----GICGTFMG--SLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHL--QPAPDLVVVGNA 89 (524)
T ss_dssp -CCEEEEE----TTTSHHHH--HHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGG--CSCCSEEEECTT
T ss_pred cCCEEEEE----EecHhhHH--HHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHc--CCCCCEEEECCC
Confidence 34666554 77777644 56888899999998876333334567889999998754332222 236899999887
Q ss_pred hhh
Q 004760 321 VCA 323 (732)
Q Consensus 321 v~~ 323 (732)
+..
T Consensus 90 i~~ 92 (524)
T 3hn7_A 90 MKR 92 (524)
T ss_dssp CCT
T ss_pred cCC
Confidence 743
No 90
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=46.65 E-value=1.4e+02 Score=25.53 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=54.0
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEc-CC---CChhhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DA---GGTKEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~t-d~---gG~~EiVe~g~~Gll~~~ 675 (732)
.|......++....+.. .|++++-.. +.+.-|..+++.+.. .+|+|.- +. ....+.+..|..+++..+
T Consensus 33 ~v~~~~~~~~a~~~l~~~~~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp 111 (142)
T 3cg4_A 33 HIISADSGGQCIDLLKKGFSGVVLLDIM-MPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKP 111 (142)
T ss_dssp EEEEESSHHHHHHHHHTCCCEEEEEESC-CSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESS
T ss_pred EEEEeCCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCC
Confidence 45555444555555554 577777654 344567778887754 4677653 32 233445566788999988
Q ss_pred CCCcHHHHHHHHHHHhc
Q 004760 676 GHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~ 692 (732)
-+. +.|...|..++.
T Consensus 112 ~~~--~~l~~~i~~~~~ 126 (142)
T 3cg4_A 112 FDN--EDLIEKTTFFMG 126 (142)
T ss_dssp CCH--HHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHH
Confidence 877 899999988764
No 91
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=46.62 E-value=2.4e+02 Score=28.41 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=64.0
Q ss_pred hhHHHHHHHcCEEEEccC----CCCCCCcHHHHHHHHcCC-CEEEcCCCChhh-------hhccCceE-EEECCCCCcHH
Q 004760 615 TRVASLYSAADVYVINSQ----GLGETFGRVTIEAMAFGV-PVLGTDAGGTKE-------IVEHNVTG-LLHPPGHPGAQ 681 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~----~~~Egfg~vilEAMA~Gl-PVI~td~gG~~E-------iVe~g~~G-ll~~~~d~~~e 681 (732)
+++.+-++.+...-.-|. .+.-.+-.+-+|--|||+ ||.--..|..-. +-.| ..| +.++..|. +
T Consensus 279 semlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltsh-dsgiiwfdendm--e 355 (401)
T 1xv5_A 279 SEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSH-DSGIIWFDENDM--E 355 (401)
T ss_dssp HHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGS-CCSCEEECTTCH--H
T ss_pred HHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCccccc-CCceEEecCCch--H
Confidence 567777777777666554 123457789999999998 554433222111 2223 344 45787777 8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcC
Q 004760 682 VLAQNLRYLLKNPSVRERMAMEGRKKVERMYL 713 (732)
Q Consensus 682 ~La~aL~~LL~n~~~r~~m~~~~r~~v~~~ys 713 (732)
.--+.|.++-.|..+..+-.+.+.+...++-+
T Consensus 356 stferikelssdralydrerekayeflyqhqd 387 (401)
T 1xv5_A 356 STFERIKELSSDRALYDREREKAYEFLYQHQD 387 (401)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHHHHhccc
Confidence 88999999999998888877777776654433
No 92
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=45.99 E-value=1.5e+02 Score=25.83 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=52.9
Q ss_pred cEEEccchhhHHHHHH---------HcCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEE-cCCCC---hhhhhccCc
Q 004760 607 AMLWTPATTRVASLYS---------AADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGG---TKEIVEHNV 668 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys---------aADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~-td~gG---~~EiVe~g~ 668 (732)
.|.......+...++. ..|++++--. +.+.-|.-+++.+.. .+|+|. |.... ..+.++.|.
T Consensus 36 ~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~-lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga 114 (149)
T 1i3c_A 36 ELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN-LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHV 114 (149)
T ss_dssp EEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC-CSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTC
T ss_pred cEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC-CCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCC
Confidence 4444444455555555 3688887654 234456777777753 567765 44333 234456788
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 004760 669 TGLLHPPGHPGAQVLAQNLRYLL 691 (732)
Q Consensus 669 ~Gll~~~~d~~~e~La~aL~~LL 691 (732)
.+++..+-+. +.|...+..++
T Consensus 115 ~~~l~KP~~~--~~L~~~i~~~~ 135 (149)
T 1i3c_A 115 NCYLTKSRNL--KDLFKMVQGIE 135 (149)
T ss_dssp SEEEECCSSH--HHHHHHHHHHH
T ss_pred cEEEECCCCH--HHHHHHHHHHH
Confidence 9999998887 88988888764
No 93
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=45.21 E-value=1.5e+02 Score=25.53 Aligned_cols=84 Identities=8% Similarity=0.217 Sum_probs=55.5
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEE-cCCCCh---hhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGT---KEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~-td~gG~---~EiVe~g~~Gll~~~ 675 (732)
.|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|||. |+.... .+.+..|..+++..+
T Consensus 34 ~v~~~~~~~~a~~~l~~~~~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp 112 (147)
T 2zay_A 34 DIIQCGNAIEAVPVAVKTHPHLIITEAN-MPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKP 112 (147)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEESC-CSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESS
T ss_pred eEEEeCCHHHHHHHHHcCCCCEEEEcCC-CCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCC
Confidence 45544444454454443 688887654 345567778888764 678776 444332 333467888999998
Q ss_pred CCCcHHHHHHHHHHHhcC
Q 004760 676 GHPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n 693 (732)
-+. +.|...|..++..
T Consensus 113 ~~~--~~L~~~i~~~~~~ 128 (147)
T 2zay_A 113 VNA--IRLSARIKRVLKL 128 (147)
T ss_dssp CCH--HHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHH
Confidence 887 8999999888763
No 94
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=45.20 E-value=40 Score=35.47 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-----------CChhHHHhCCcEEEEcCCCc--h---
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEP--S--- 305 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-----------~l~~el~~~gI~v~~~~~~~--~--- 305 (732)
+.||+++ |.+-......++|.+.||+|..|+...+. +..+...+.||+++...... .
T Consensus 3 ~mrIvf~-------Gt~~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~ 75 (314)
T 1fmt_A 3 SLRIIFA-------GTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQ 75 (314)
T ss_dssp CCEEEEE-------ECSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHH
T ss_pred CCEEEEE-------ecCHHHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHHH
Confidence 4577777 33445555567777889999877744211 12344568999998644322 1
Q ss_pred hhhhcCccEEEe
Q 004760 306 FKTSMKADLVIA 317 (732)
Q Consensus 306 ~~~~~k~DlVia 317 (732)
.....+||++++
T Consensus 76 ~l~~~~~Dliv~ 87 (314)
T 1fmt_A 76 LVAELQADVMVV 87 (314)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHhcCCCEEEE
Confidence 334789999955
No 95
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=44.37 E-value=50 Score=37.16 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=55.8
Q ss_pred cccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-hh---H-HHh----CCcEEEEcC
Q 004760 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-MP---E-LAR----RKIKVLEDR 301 (732)
Q Consensus 231 ~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l-~~---e-l~~----~gI~v~~~~ 301 (732)
|+-.|+.....+|||++. |-+..++.||+.|.++|.+|..+.......- .+ + ++. .+..++...
T Consensus 349 ~~l~d~~~~l~Gkrv~i~-------gd~~~~~~la~~L~ElGm~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~~v~~~~ 421 (519)
T 1qgu_B 349 DMMLDSHTWLHGKKFGLY-------GDPDFVMGLTRFLLELGCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVFINC 421 (519)
T ss_dssp HHHHHHHHHHTTCEEEEE-------SCHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHHSTTCTTCEEEESC
T ss_pred HHHHHHHHHcCCCEEEEE-------CCchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCCEEEECC
Confidence 344456677889999987 3477899999999999999988875553321 11 1 333 245666654
Q ss_pred CCch---hhhhcCccEEEeCCc
Q 004760 302 GEPS---FKTSMKADLVIAGSA 320 (732)
Q Consensus 302 ~~~~---~~~~~k~DlVia~Sa 320 (732)
.... +.+..+||++|+++.
T Consensus 422 d~~~l~~~i~~~~pDLiig~~~ 443 (519)
T 1qgu_B 422 DLWHFRSLMFTRQPDFMIGNSY 443 (519)
T ss_dssp CHHHHHHHHHHHCCSEEEECGG
T ss_pred CHHHHHHHHhhcCCCEEEECcc
Confidence 3332 344668999999874
No 96
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=43.83 E-value=54 Score=29.71 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=45.1
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH---HhCCcEEEEcCCCch--hhh--hcCc
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL---ARRKIKVLEDRGEPS--FKT--SMKA 312 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el---~~~gI~v~~~~~~~~--~~~--~~k~ 312 (732)
|.+++|+++ |+...-..+|+.|.+.|++|.++... .....+.+ ...|+.++.-..... +.. -.++
T Consensus 1 ~~~~~vlI~-------G~G~vG~~la~~L~~~g~~V~vid~~-~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a 72 (153)
T 1id1_A 1 HRKDHFIVC-------GHSILAINTILQLNQRGQNVTVISNL-PEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRC 72 (153)
T ss_dssp CCCSCEEEE-------CCSHHHHHHHHHHHHTTCCEEEEECC-CHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred CCCCcEEEE-------CCCHHHHHHHHHHHHCCCCEEEEECC-ChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhC
Confidence 445677766 33455578899999999999998721 11111122 245788887554322 332 3478
Q ss_pred cEEEeCCc
Q 004760 313 DLVIAGSA 320 (732)
Q Consensus 313 DlVia~Sa 320 (732)
|+|++.+.
T Consensus 73 d~vi~~~~ 80 (153)
T 1id1_A 73 RAILALSD 80 (153)
T ss_dssp SEEEECSS
T ss_pred CEEEEecC
Confidence 99987653
No 97
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=43.65 E-value=1.6e+02 Score=25.67 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=53.8
Q ss_pred cEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEcCC-CC---hhhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMA---FGVPVLGTDA-GG---TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~td~-gG---~~EiVe~g~~Gll~~~~d 677 (732)
.|.......+....+. ..|++++-.. +.+.-|..+++.+. ..+|+|.... .. ..+.+..|..+++..+-+
T Consensus 29 ~v~~~~~~~~a~~~l~~~~~dliild~~-l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~ 107 (155)
T 1qkk_A 29 TVSSFASATEALAGLSADFAGIVISDIR-MPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFA 107 (155)
T ss_dssp EEEEESCHHHHHHTCCTTCCSEEEEESC-CSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCC
T ss_pred EEEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCC
Confidence 3444443344433333 3588877654 24445666676664 3688876433 22 334456788999999888
Q ss_pred CcHHHHHHHHHHHhcCHH
Q 004760 678 PGAQVLAQNLRYLLKNPS 695 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~~ 695 (732)
. +.|...+..++....
T Consensus 108 ~--~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 108 A--DRLVQSARRAEEKRR 123 (155)
T ss_dssp H--HHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHH
Confidence 7 999999998876443
No 98
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=43.49 E-value=39 Score=34.80 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCC-----ChhHHHhCCcEEEEcCCCch--hhh---hcCccEEEeCCch
Q 004760 260 SMMELATELLSCGATVSAVVLSKRGG-----LMPELARRKIKVLEDRGEPS--FKT---SMKADLVIAGSAV 321 (732)
Q Consensus 260 ~~~eLA~~L~~~G~~V~vv~l~~~g~-----l~~el~~~gI~v~~~~~~~~--~~~---~~k~DlVia~Sav 321 (732)
.=-.++++|.+.||+|.+++-..... ....+...++.++..+.... +.. ..++|+||...+.
T Consensus 22 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 22 IGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECCch
Confidence 33467788999999999887332121 11245568999887665432 322 3479999877554
No 99
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=43.27 E-value=77 Score=27.26 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=55.7
Q ss_pred cEEEccchhhHHHHHHH---cCEEEEccCCCC-CCCcHHHHHHHHc-----CCCEEEcCC-CC---hhhhhccCceEEEE
Q 004760 607 AMLWTPATTRVASLYSA---ADVYVINSQGLG-ETFGRVTIEAMAF-----GVPVLGTDA-GG---TKEIVEHNVTGLLH 673 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa---ADv~V~pS~~~~-Egfg~vilEAMA~-----GlPVI~td~-gG---~~EiVe~g~~Gll~ 673 (732)
.|.......+....+.. .|++++-.. +. +.-|..+++.+.. .+|+|.-.. .. ..+.++.|..+++.
T Consensus 31 ~v~~~~~~~~a~~~l~~~~~~dlvi~D~~-l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 109 (140)
T 3lua_A 31 DFIEVENLKKFYSIFKDLDSITLIIMDIA-FPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYIL 109 (140)
T ss_dssp EEEEECSHHHHHTTTTTCCCCSEEEECSC-SSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEE
T ss_pred cEEEECCHHHHHHHHhcCCCCcEEEEeCC-CCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 45444444455555544 688887664 23 3346667776654 788877433 32 23445678899999
Q ss_pred CCCCCcHHHHHHHHHHHhcCHH
Q 004760 674 PPGHPGAQVLAQNLRYLLKNPS 695 (732)
Q Consensus 674 ~~~d~~~e~La~aL~~LL~n~~ 695 (732)
.+-+. +.|..+|..+++...
T Consensus 110 KP~~~--~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 110 KPYPT--KRLENSVRSVLKICQ 129 (140)
T ss_dssp SSCCT--THHHHHHHHHHCC--
T ss_pred CCCCH--HHHHHHHHHHHHhcc
Confidence 99888 899999999987543
No 100
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=42.92 E-value=72 Score=35.92 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=54.3
Q ss_pred cccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-C----hhHHHh--C--CcEEEEcC
Q 004760 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-L----MPELAR--R--KIKVLEDR 301 (732)
Q Consensus 231 ~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l----~~el~~--~--gI~v~~~~ 301 (732)
|+-.|+.....+|||++. |.+..+..||+.|.++|.+|..+....... + ...+.. . +..++...
T Consensus 353 ~~l~d~~~~l~GKrvaI~-------gd~~~~~~la~fL~elGm~vv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~ 425 (523)
T 3u7q_B 353 DMMTDSHTWLHGKRFALW-------GDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGK 425 (523)
T ss_dssp HHHHHHHHHHTTCEEEEE-------CSHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEEESC
T ss_pred HHHHHHHHhcCCCEEEEE-------CCchHHHHHHHHHHHcCCEEEEEEeCCCCHHHHHHHHHHHhhccCCCCcEEEECC
Confidence 344456667889999986 456788899999999999998887543321 1 122322 1 34565543
Q ss_pred CCch---hhhhcCccEEEeCCc
Q 004760 302 GEPS---FKTSMKADLVIAGSA 320 (732)
Q Consensus 302 ~~~~---~~~~~k~DlVia~Sa 320 (732)
.... +....+||+++.|+.
T Consensus 426 D~~~l~~~i~~~~pDLlig~s~ 447 (523)
T 3u7q_B 426 DLWHLRSLVFTDKPDFMIGNSY 447 (523)
T ss_dssp CHHHHHHHHHHTCCSEEEECTT
T ss_pred CHHHHHHHHHhcCCCEEEECcc
Confidence 3222 444779999999974
No 101
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=41.93 E-value=55 Score=33.05 Aligned_cols=64 Identities=17% Similarity=-0.021 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC----CcEEEEcCCCc--hhhh---hcCccEEEeCCch
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----KIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~----gI~v~~~~~~~--~~~~---~~k~DlVia~Sav 321 (732)
.-.=..++++|++.||+|.++.-.....-...+... ++.++..+... .+.. ..++|+||.+.+.
T Consensus 13 G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~ 85 (345)
T 2z1m_A 13 GQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQ 85 (345)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred ChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 344457788999999999887632222111233332 45554433221 1222 3368999776554
No 102
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=41.12 E-value=44 Score=36.80 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=47.3
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH-hCCcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~-~~gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
.+++|++| |+..+....|+.|.+.|++|+|+..... +-..++. ..++.++......... ..+|+||+.+
T Consensus 11 ~~~~vlVv-------GgG~va~~k~~~L~~~ga~V~vi~~~~~-~~~~~l~~~~~i~~~~~~~~~~~l--~~~~lVi~at 80 (457)
T 1pjq_A 11 RDRDCLIV-------GGGDVAERKARLLLEAGARLTVNALTFI-PQFTVWANEGMLTLVEGPFDETLL--DSCWLAIAAT 80 (457)
T ss_dssp BTCEEEEE-------CCSHHHHHHHHHHHHTTBEEEEEESSCC-HHHHHHHTTTSCEEEESSCCGGGG--TTCSEEEECC
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHhCcCEEEEEcCCCC-HHHHHHHhcCCEEEEECCCCcccc--CCccEEEEcC
Confidence 35778777 4445788889999999999999983222 1123333 3568887655544322 2689999876
Q ss_pred chh
Q 004760 320 AVC 322 (732)
Q Consensus 320 av~ 322 (732)
...
T Consensus 81 ~~~ 83 (457)
T 1pjq_A 81 DDD 83 (457)
T ss_dssp SCH
T ss_pred CCH
Confidence 544
No 103
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=41.11 E-value=1.8e+02 Score=25.29 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=53.7
Q ss_pred EccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHHc---CCCEEE-cCCCC---hhhhhccCceEEEECCCCCcH
Q 004760 610 WTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAF---GVPVLG-TDAGG---TKEIVEHNVTGLLHPPGHPGA 680 (732)
Q Consensus 610 f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA~---GlPVI~-td~gG---~~EiVe~g~~Gll~~~~d~~~ 680 (732)
......+....+. ..|++++-.. +.+.-|..+++.+.. .+|||. |.... ..+.+..|..+++..+-+.
T Consensus 46 ~~~~~~~a~~~l~~~~~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~-- 122 (152)
T 3eul_A 46 EADDGAAALELIKAHLPDVALLDYR-MPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR-- 122 (152)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEETT-CSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCH--
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCH--
Confidence 3333344444443 4688887654 355567777777653 567766 34333 2345567889999998887
Q ss_pred HHHHHHHHHHhcCH
Q 004760 681 QVLAQNLRYLLKNP 694 (732)
Q Consensus 681 e~La~aL~~LL~n~ 694 (732)
+.|.+++..++...
T Consensus 123 ~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 123 TEIVKAVLDCAKGR 136 (152)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999988754
No 104
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=41.05 E-value=1.8e+02 Score=25.31 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=56.1
Q ss_pred cEEEccchhhHHHHHHH---cCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEc-CCCC---hhhhhccC-ceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA---ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGG---TKEIVEHN-VTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa---ADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~t-d~gG---~~EiVe~g-~~Gll~~~ 675 (732)
.|.......+....+.. .|++++-.. +.+.-|..+++.+. ..+|+|.- .... ..+.+..+ ..+++..+
T Consensus 29 ~v~~~~~~~~a~~~l~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP 107 (151)
T 3kcn_A 29 EVTTCESGPEALACIKKSDPFSVIMVDMR-MPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKP 107 (151)
T ss_dssp EEEEESSHHHHHHHHHHSCCCSEEEEESC-CSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESS
T ss_pred eEEEeCCHHHHHHHHHcCCCCCEEEEeCC-CCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCC
Confidence 45544444555555543 388887654 35556677776654 36777664 3332 33445566 78999998
Q ss_pred CCCcHHHHHHHHHHHhcCHHH
Q 004760 676 GHPGAQVLAQNLRYLLKNPSV 696 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n~~~ 696 (732)
-+. +.|..+|..+++....
T Consensus 108 ~~~--~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 108 CQM--SDIKAAINAGIKQYDL 126 (151)
T ss_dssp CCH--HHHHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHHHHH
Confidence 887 9999999998875443
No 105
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=40.98 E-value=1.4e+02 Score=24.03 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=52.4
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEE-cCCCChhhhhccCceEEEECCCCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGTKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~-td~gG~~EiVe~g~~Gll~~~~d~ 678 (732)
.|.......+....+.. .|++++-.. +.+.-|..+++.+. ..+|+|. ++.....+....+..+++..+-+.
T Consensus 27 ~v~~~~~~~~~~~~l~~~~~dlii~d~~-~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~ 105 (119)
T 2j48_A 27 KVIWLVDGSTALDQLDLLQPIVILMAWP-PPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDP 105 (119)
T ss_dssp EEEEESCHHHHHHHHHHHCCSEEEEECS-TTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTT
T ss_pred EEEEecCHHHHHHHHHhcCCCEEEEecC-CCCCCHHHHHHHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCH
Confidence 45544444444444443 688877654 24445677787775 4577765 333222266677788899888887
Q ss_pred cHHHHHHHHHHHhc
Q 004760 679 GAQVLAQNLRYLLK 692 (732)
Q Consensus 679 ~~e~La~aL~~LL~ 692 (732)
+.|...+..++.
T Consensus 106 --~~l~~~l~~~~~ 117 (119)
T 2j48_A 106 --QLLLTTLQGLCP 117 (119)
T ss_dssp --HHHHHHHHTTCC
T ss_pred --HHHHHHHHHHhc
Confidence 889998887754
No 106
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=40.69 E-value=47 Score=33.60 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=34.8
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM 287 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~ 287 (732)
|+-+++..-+..|-...++++|.+|.+.|+.|.++.+...|...
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChh
Confidence 34456666777888999999999999999999999876655433
No 107
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=40.40 E-value=57 Score=34.12 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHHCCCEEEEEEeCCCC--------CChhHHHhCCcEEEEcCCCch-----hhhhcCccEEEe
Q 004760 256 GAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGEPS-----FKTSMKADLVIA 317 (732)
Q Consensus 256 GA~~~~~eLA~~L~~~G~~V~vv~l~~~g--------~l~~el~~~gI~v~~~~~~~~-----~~~~~k~DlVia 317 (732)
|.+-......++|.+.||+|.+|+...+. +..+...+.||+++....... ..+..+||++++
T Consensus 7 gt~~fa~~~L~~L~~~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~ 81 (305)
T 2bln_A 7 AYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFS 81 (305)
T ss_dssp ECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEE
T ss_pred EcCHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHHhcCCCEEEE
Confidence 44555556667788889999888754332 234455688999987554321 344789999954
No 108
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=39.57 E-value=1.2e+02 Score=30.80 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCCCC--hhHHHh-------CCcEEEEcCCCch--hhh-hcCccEEEeCCch
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKRGGL--MPELAR-------RKIKVLEDRGEPS--FKT-SMKADLVIAGSAV 321 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~g~l--~~el~~-------~gI~v~~~~~~~~--~~~-~~k~DlVia~Sav 321 (732)
.-.=..|+.+|.+.|++|.+++-...+.. ...+.. .++.++..+.... +.. ..++|+||...+.
T Consensus 35 G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 35 GFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAAL 110 (351)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEEEECCcc
Confidence 34445788899999999998873332221 122222 5788776654332 333 2379999766543
No 109
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=39.15 E-value=62 Score=29.94 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--hhhh-hcCccEEEeCCc
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGSA 320 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--~~~~-~~k~DlVia~Sa 320 (732)
...=..++++|.+.|++|.+++-... .+ ..+...++.++..+... .+.. -.++|+|+....
T Consensus 13 G~iG~~l~~~l~~~g~~V~~~~r~~~-~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 13 GQTGLTTLAQAVQAGYEVTVLVRDSS-RL-PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCGG-GS-CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred cHHHHHHHHHHHHCCCeEEEEEeChh-hc-ccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 44556788899999999998873221 11 11113467776655432 2333 236899876653
No 110
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=39.04 E-value=1.8e+02 Score=24.77 Aligned_cols=85 Identities=8% Similarity=0.052 Sum_probs=50.7
Q ss_pred cEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEEcCC----CChhhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMA-----FGVPVLGTDA----GGTKEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~td~----gG~~EiVe~g~~Gll~~~ 675 (732)
.|.......+....+. ..|++++-.. +.+.-|..+++.+. ..+|+|.... ....+.+..|..+++..+
T Consensus 28 ~v~~~~~~~~a~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP 106 (140)
T 3n53_A 28 LVIESKNEKEALEQIDHHHPDLVILDMD-IIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKP 106 (140)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEETT-C------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESS
T ss_pred eEEEeCCHHHHHHHHhcCCCCEEEEeCC-CCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCC
Confidence 4444444444444443 3588887654 34445666677665 5678876432 223445567788999998
Q ss_pred CCCcHHHHHHHHHHHhcCH
Q 004760 676 GHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n~ 694 (732)
-+. +.|..++..++...
T Consensus 107 ~~~--~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 107 FNR--NDLLSRIEIHLRTQ 123 (140)
T ss_dssp CCH--HHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHhhH
Confidence 887 99999999887643
No 111
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=39.01 E-value=1.9e+02 Score=24.86 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=55.0
Q ss_pred cEEEccchhhHHHHHH---HcCEEEEccCCCCC-CCcHHHHHHHH--cCCCEEEc-CC---CChhhhhccCceEEEECCC
Q 004760 607 AMLWTPATTRVASLYS---AADVYVINSQGLGE-TFGRVTIEAMA--FGVPVLGT-DA---GGTKEIVEHNVTGLLHPPG 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys---aADv~V~pS~~~~E-gfg~vilEAMA--~GlPVI~t-d~---gG~~EiVe~g~~Gll~~~~ 676 (732)
.|.......+....+. ..|++++-.. +.+ .-|..+++.+. ..+|+|.- .. ....+.+..|..+++..+-
T Consensus 31 ~v~~~~~~~~a~~~l~~~~~~dlvi~D~~-l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~ 109 (140)
T 3h5i_A 31 TVEIALTGEAAVEKVSGGWYPDLILMDIE-LGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSA 109 (140)
T ss_dssp EEEEESSHHHHHHHHHTTCCCSEEEEESS-CSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTC
T ss_pred EEEEecChHHHHHHHhcCCCCCEEEEecc-CCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCC
Confidence 3544444455555554 3588888665 233 45666776664 47888763 22 2344566678899999988
Q ss_pred CCcHHHHHHHHHHHhcC
Q 004760 677 HPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n 693 (732)
+. +.|...|..+++.
T Consensus 110 ~~--~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 110 TE--QVLITIVEMALRL 124 (140)
T ss_dssp CH--HHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHH
Confidence 87 9999999988763
No 112
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=38.68 E-value=75 Score=34.90 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=52.4
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-hhH----HHhCC---cEEEEcCCCch
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-MPE----LARRK---IKVLEDRGEPS 305 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l-~~e----l~~~g---I~v~~~~~~~~ 305 (732)
.++.....+|||++.. .+-....|++.|.+.|.+|..+........ .++ ++..+ ..++.......
T Consensus 304 ~d~~~~l~gkrv~i~~-------~~~~~~~l~~~L~elG~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~ 376 (458)
T 1mio_B 304 IDAQQYLQGKKVALLG-------DPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFD 376 (458)
T ss_dssp HHTHHHHTTCEEEEEE-------CHHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHH
T ss_pred HHHHHHcCCCEEEEEc-------CchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCCHHH
Confidence 3455666889998873 357888999999999999998876553321 111 33333 45655422222
Q ss_pred ---hhhhcCccEEEeCCc
Q 004760 306 ---FKTSMKADLVIAGSA 320 (732)
Q Consensus 306 ---~~~~~k~DlVia~Sa 320 (732)
+.+..+||+++.++.
T Consensus 377 l~~~i~~~~pDl~ig~~~ 394 (458)
T 1mio_B 377 VHQWIKNEGVDLLISNTY 394 (458)
T ss_dssp HHHHHHHSCCSEEEESGG
T ss_pred HHHHHHhcCCCEEEeCcc
Confidence 344779999998874
No 113
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=38.03 E-value=52 Score=34.04 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
+++||+| |+..+....|+.|.+.|++|+|+......+
T Consensus 13 ~k~VLVV-------GgG~va~rka~~Ll~~Ga~VtViap~~~~~ 49 (274)
T 1kyq_A 13 DKRILLI-------GGGEVGLTRLYKLMPTGCKLTLVSPDLHKS 49 (274)
T ss_dssp TCEEEEE-------EESHHHHHHHHHHGGGTCEEEEEEEEECTT
T ss_pred CCEEEEE-------CCcHHHHHHHHHHHhCCCEEEEEcCCCCcc
Confidence 4667766 555688899999999999999998654433
No 114
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=37.97 E-value=42 Score=35.45 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=45.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-----------CChhHHHhCCcEEEEcCCCc--h---h
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEP--S---F 306 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-----------~l~~el~~~gI~v~~~~~~~--~---~ 306 (732)
.||+|+ |.|-......++|.+.||+|..|+...+. +..+...+.||+++...... . .
T Consensus 5 mrIvf~-------Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~~~~~~~~~~ 77 (317)
T 3rfo_A 5 IKVVFM-------GTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEYEK 77 (317)
T ss_dssp SEEEEE-------CCSTTHHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECCSCTTSHHHHHH
T ss_pred eEEEEE-------eCCHHHHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEccccCCCHHHHHH
Confidence 477777 55555566677888889999888754322 12344568999998643322 1 3
Q ss_pred hhhcCccEEEeC
Q 004760 307 KTSMKADLVIAG 318 (732)
Q Consensus 307 ~~~~k~DlVia~ 318 (732)
....+||++++-
T Consensus 78 l~~~~~Dliv~~ 89 (317)
T 3rfo_A 78 VLALEPDLIVTA 89 (317)
T ss_dssp HHHHCCSEEEES
T ss_pred HHhcCCCEEEEc
Confidence 347899999654
No 115
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=37.73 E-value=61 Score=31.99 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=37.2
Q ss_pred HHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCc
Q 004760 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSA 320 (732)
Q Consensus 261 ~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sa 320 (732)
=-.|+++|.+.||+|.+++ +...-...+...++.++..+... +. ..++|+||...+
T Consensus 17 G~~l~~~L~~~g~~V~~~~--r~~~~~~~~~~~~~~~~~~D~~d-~~-~~~~d~vi~~a~ 72 (286)
T 3ius_A 17 ARVLSRALAPQGWRIIGTS--RNPDQMEAIRASGAEPLLWPGEE-PS-LDGVTHLLISTA 72 (286)
T ss_dssp HHHHHHHHGGGTCEEEEEE--SCGGGHHHHHHTTEEEEESSSSC-CC-CTTCCEEEECCC
T ss_pred HHHHHHHHHHCCCEEEEEE--cChhhhhhHhhCCCeEEEecccc-cc-cCCCCEEEECCC
Confidence 3467888999999998887 33333455666888887655432 22 457898866543
No 116
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=37.41 E-value=32 Score=34.87 Aligned_cols=90 Identities=19% Similarity=0.090 Sum_probs=40.5
Q ss_pred cccccc-cchhhhhcc--CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--CChhHHHhCCcEE--EE
Q 004760 227 SGTCDR-KGDFARFVW--SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELARRKIKV--LE 299 (732)
Q Consensus 227 ~~~~~~-~~~~~~~~~--~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--~l~~el~~~gI~v--~~ 299 (732)
+++|+. ++-|-+-|+ ..|+++|+...+ -.=..+|++|++.|++|.++.-.... .+..++...+.++ +.
T Consensus 9 ~~~~~~~~~~~~~~m~~~~~k~~lVTGas~-----GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 83 (283)
T 3v8b_A 9 SGVDLGTENLYFQSMMNQPSPVALITGAGS-----GIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALE 83 (283)
T ss_dssp ------------------CCCEEEEESCSS-----HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEE
T ss_pred cccccccchhhhhhhcCCCCCEEEEECCCC-----HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 566666 333333333 357778864332 23356889999999998887622111 1223343334343 33
Q ss_pred cCCCch--h---hh-----hcCccEEEeCCch
Q 004760 300 DRGEPS--F---KT-----SMKADLVIAGSAV 321 (732)
Q Consensus 300 ~~~~~~--~---~~-----~~k~DlVia~Sav 321 (732)
.+.... + .. ..++|++|.+..+
T Consensus 84 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 84 ADVSDELQMRNAVRDLVLKFGHLDIVVANAGI 115 (283)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 332211 1 11 2389999887654
No 117
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=36.98 E-value=74 Score=32.93 Aligned_cols=85 Identities=16% Similarity=0.033 Sum_probs=39.5
Q ss_pred cccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC---ChhHH-------HhCCcEEEEc
Q 004760 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPEL-------ARRKIKVLED 300 (732)
Q Consensus 231 ~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~---l~~el-------~~~gI~v~~~ 300 (732)
.|.+.|-+--|+++| +|+ ||+.-.=..++++|++.|++|.+++-..... ....+ ...++.++..
T Consensus 13 ~~~~~~~~~~M~~~v-lVt-----GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (375)
T 1t2a_A 13 GRENKYFQGHMRNVA-LIT-----GITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 86 (375)
T ss_dssp -----------CCEE-EEE-----TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEEC
T ss_pred cccchhhHhhcCcEE-EEE-----CCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEc
Confidence 344444444333554 454 3333444677889999999999887432221 11222 1235666654
Q ss_pred CCCc--hhhh---hcCccEEEeCCch
Q 004760 301 RGEP--SFKT---SMKADLVIAGSAV 321 (732)
Q Consensus 301 ~~~~--~~~~---~~k~DlVia~Sav 321 (732)
+... .+.. ..++|+||...+.
T Consensus 87 Dl~d~~~~~~~~~~~~~d~vih~A~~ 112 (375)
T 1t2a_A 87 DLTDSTCLVKIINEVKPTEIYNLGAQ 112 (375)
T ss_dssp CTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred cCCCHHHHHHHHHhcCCCEEEECCCc
Confidence 4322 1222 3368999776554
No 118
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=36.88 E-value=50 Score=29.62 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=47.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--hhh--hcCccEEEeC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--FKT--SMKADLVIAG 318 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--~~~--~~k~DlVia~ 318 (732)
.+|+++ |+...-..+|+.|.+.|++|.++. ......+++...|+.++....... +.. -.++|+|++.
T Consensus 8 ~~viIi-------G~G~~G~~la~~L~~~g~~v~vid--~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 8 NHALLV-------GYGRVGSLLGEKLLASDIPLVVIE--TSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp SCEEEE-------CCSHHHHHHHHHHHHTTCCEEEEE--SCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCEEEE-------CcCHHHHHHHHHHHHCCCCEEEEE--CCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 456665 455667788999999999999987 333345667778999887655332 332 3478998866
Q ss_pred Cc
Q 004760 319 SA 320 (732)
Q Consensus 319 Sa 320 (732)
+.
T Consensus 79 ~~ 80 (140)
T 3fwz_A 79 IP 80 (140)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 119
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=36.75 E-value=36 Score=34.26 Aligned_cols=77 Identities=8% Similarity=-0.019 Sum_probs=39.5
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--CChhHHHhCCcEE--EEcCCCch--h---h---
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELARRKIKV--LEDRGEPS--F---K--- 307 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--~l~~el~~~gI~v--~~~~~~~~--~---~--- 307 (732)
|...|+++|+... .-.=..+|++|++.|++|.++.-.... ....++...+.++ +..+.... + .
T Consensus 21 m~~~k~~lVTGas-----~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (279)
T 3sju_A 21 MSRPQTAFVTGVS-----SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAA 95 (279)
T ss_dssp ----CEEEEESTT-----SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCC-----CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 4556677776433 233356888999999998777621110 1223444444444 33332221 1 1
Q ss_pred --hhcCccEEEeCCch
Q 004760 308 --TSMKADLVIAGSAV 321 (732)
Q Consensus 308 --~~~k~DlVia~Sav 321 (732)
...++|++|.+..+
T Consensus 96 ~~~~g~id~lv~nAg~ 111 (279)
T 3sju_A 96 VERFGPIGILVNSAGR 111 (279)
T ss_dssp HHHHCSCCEEEECCCC
T ss_pred HHHcCCCcEEEECCCC
Confidence 12378999887543
No 120
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=36.11 E-value=1.5e+02 Score=25.16 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=50.1
Q ss_pred EEEccchhhHHHHHH-HcCEEEEccCCCCCCCcHHHHHHHH--c-----CCC-EE-EcCCCChh---hhhccCceEEEEC
Q 004760 608 MLWTPATTRVASLYS-AADVYVINSQGLGETFGRVTIEAMA--F-----GVP-VL-GTDAGGTK---EIVEHNVTGLLHP 674 (732)
Q Consensus 608 V~f~G~~~dv~~lys-aADv~V~pS~~~~Egfg~vilEAMA--~-----GlP-VI-~td~gG~~---EiVe~g~~Gll~~ 674 (732)
|.......+...++. ..|++++-.. +...-|.-+++.+. . ..| +| .|...... +.++.|..+++..
T Consensus 34 v~~~~~~~~a~~~~~~~~dlvllD~~-lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K 112 (136)
T 1dcf_A 34 VTTVSSNEECLRVVSHEHKVVFMDVC-MPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLK 112 (136)
T ss_dssp EEEESSHHHHHHHCCTTCSEEEEECC-SSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEES
T ss_pred EEEeCCHHHHHHHHhccCCEEEEeCC-CCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEEC
Confidence 443333334333332 2388887544 23344566666664 1 244 54 45554433 3456788999999
Q ss_pred CCCCcHHHHHHHHHHHhcCH
Q 004760 675 PGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 675 ~~d~~~e~La~aL~~LL~n~ 694 (732)
|-+. +.|.+.+..++...
T Consensus 113 P~~~--~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 113 PVSL--DNIRDVLSDLLEPR 130 (136)
T ss_dssp SCCH--HHHHHHHHHHHSCC
T ss_pred CCCH--HHHHHHHHHHhchh
Confidence 9887 99999998887643
No 121
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=35.96 E-value=2.2e+02 Score=24.90 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=54.8
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEEc-CCCC---hhhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLGT-DAGG---TKEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~t-d~gG---~~EiVe~g~~Gll~~~ 675 (732)
.|......++....+.. .|++++-.. +.+.-|..+++.+. ..+|+|.. .... ..+.++.|..+++..|
T Consensus 33 ~v~~~~~~~~al~~l~~~~~dlii~D~~-l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP 111 (154)
T 3gt7_A 33 QTEHVRNGREAVRFLSLTRPDLIISDVL-MPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKP 111 (154)
T ss_dssp EEEEESSHHHHHHHHTTCCCSEEEEESC-CSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESS
T ss_pred EEEEeCCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCC
Confidence 35444444455555543 578887665 35556777887775 36788764 3333 2334566888999998
Q ss_pred CCCcHHHHHHHHHHHhc
Q 004760 676 GHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~ 692 (732)
-+. +.|...+..++.
T Consensus 112 ~~~--~~l~~~i~~~l~ 126 (154)
T 3gt7_A 112 CKD--VVLASHVKRLLS 126 (154)
T ss_dssp CCH--HHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHH
Confidence 887 999999998875
No 122
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=35.50 E-value=76 Score=32.17 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=38.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
-+++.|+ .-+..|......+||..|++.|+.|.+|-+...+.+...+
T Consensus 41 ~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l 87 (307)
T 3end_A 41 AKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTL 87 (307)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHH
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHh
Confidence 4677777 5677789999999999999999999999987766665544
No 123
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=35.41 E-value=30 Score=38.32 Aligned_cols=78 Identities=22% Similarity=0.156 Sum_probs=48.9
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--hhhhhcC
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKTSMK 311 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--~~~~~~k 311 (732)
.|+...+.+||+++. |.+-.+..|++.|.+.|.+|..+..........+.... .++..+... .+....+
T Consensus 305 ~d~~~~l~Gkrv~i~-------~~~~~~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~~~--~v~~~D~~~le~~i~~~~ 375 (458)
T 3pdi_B 305 LDTHFMLSSARTAIA-------ADPDLLLGFDALLRSMGAHTVAAVVPARAAALVDSPLP--SVRVGDLEDLEHAARAGQ 375 (458)
T ss_dssp HHHHHHHTTCEEEEE-------CCHHHHHHHHHHHHTTTCEEEEEEESSCCSCCTTTTSS--CEEESHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEE-------CCcHHHHHHHHHHHHCCCEEEEEEECCCChhhhhCccC--cEEeCCHHHHHHHHHhcC
Confidence 344556778999885 33567789999999999999988865543322111111 233222111 1344779
Q ss_pred ccEEEeCCc
Q 004760 312 ADLVIAGSA 320 (732)
Q Consensus 312 ~DlVia~Sa 320 (732)
||+++.++.
T Consensus 376 pDllig~~~ 384 (458)
T 3pdi_B 376 AQLVIGNSH 384 (458)
T ss_dssp CSEEEECTT
T ss_pred CCEEEEChh
Confidence 999999874
No 124
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=35.34 E-value=2.1e+02 Score=24.46 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=52.1
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc--CCCEEEc-CCCC---hhhhhccCceEEEECCCCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF--GVPVLGT-DAGG---TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~--GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~d~ 678 (732)
.|.......+...++.. .|++++-.. +.+.-|..+++.+.. .+|+|.- .... ..+.++.|..+++..|-+.
T Consensus 30 ~v~~~~~~~~al~~~~~~~~dlvllD~~-l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~ 108 (136)
T 2qzj_A 30 SIDLAYNCEEAIGKIFSNKYDLIFLEII-LSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNL 108 (136)
T ss_dssp EEEEESSHHHHHHHHHHCCCSEEEEESE-ETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCH
T ss_pred EEEEECCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCH
Confidence 34444433444444443 588877543 233356667777653 5787764 3333 3344567889999998887
Q ss_pred cHHHHHHHHHHHhc
Q 004760 679 GAQVLAQNLRYLLK 692 (732)
Q Consensus 679 ~~e~La~aL~~LL~ 692 (732)
+.|...+..++.
T Consensus 109 --~~L~~~l~~~~~ 120 (136)
T 2qzj_A 109 --EILYAKVKAILR 120 (136)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 899999988765
No 125
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=34.84 E-value=1.1e+02 Score=31.03 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=40.9
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC--ChhHHH---hCCcEEEEcCCCch--hhh---hcC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG--LMPELA---RRKIKVLEDRGEPS--FKT---SMK 311 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~--l~~el~---~~gI~v~~~~~~~~--~~~---~~k 311 (732)
..+.++|+... .-.=..+|++|++.|++|.++.-..... ...++. ..++.++..+.... +.. ..+
T Consensus 4 ~~~~vlVTGat-----G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (341)
T 3enk_A 4 TKGTILVTGGA-----GYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHP 78 (341)
T ss_dssp SSCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSC
T ss_pred CCcEEEEecCC-----cHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccC
Confidence 34455665332 2333568889999999998876322221 111221 34666665443222 222 347
Q ss_pred ccEEEeCCch
Q 004760 312 ADLVIAGSAV 321 (732)
Q Consensus 312 ~DlVia~Sav 321 (732)
+|+||.+.+.
T Consensus 79 ~d~vih~A~~ 88 (341)
T 3enk_A 79 ITAAIHFAAL 88 (341)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECccc
Confidence 9999776554
No 126
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=34.59 E-value=1.9e+02 Score=23.72 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=53.9
Q ss_pred cEEEccchhhHHHHHH--HcCEEEEccCCCC-CCCcHHHHHHHH-----cCCCEEEcCCCCh----hhhhccCceEEEEC
Q 004760 607 AMLWTPATTRVASLYS--AADVYVINSQGLG-ETFGRVTIEAMA-----FGVPVLGTDAGGT----KEIVEHNVTGLLHP 674 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys--aADv~V~pS~~~~-Egfg~vilEAMA-----~GlPVI~td~gG~----~EiVe~g~~Gll~~ 674 (732)
.|.......+....+. ..|++++-.. +. +.-|..+++.+. ..+|+|.. .... .+.+..|..+++..
T Consensus 31 ~v~~~~~~~~a~~~~~~~~~dlvi~d~~-~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~k 108 (127)
T 2gkg_A 31 TVDETTDGKGSVEQIRRDRPDLVVLAVD-LSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAK 108 (127)
T ss_dssp EEEEECCHHHHHHHHHHHCCSEEEEESB-CGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEES
T ss_pred eEEEecCHHHHHHHHHhcCCCEEEEeCC-CCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeC
Confidence 3444444444444443 3688877554 23 345677777774 46898887 4332 33445678899999
Q ss_pred CCCCcHHHHHHHHHHHhcCH
Q 004760 675 PGHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 675 ~~d~~~e~La~aL~~LL~n~ 694 (732)
+-+. +.|...+..++..+
T Consensus 109 p~~~--~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 109 PVDA--DQLVERAGALIGFP 126 (127)
T ss_dssp SCCH--HHHHHHHHHHHCCC
T ss_pred CCCH--HHHHHHHHHHHcCC
Confidence 8887 89999999887643
No 127
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=34.46 E-value=96 Score=31.06 Aligned_cols=76 Identities=13% Similarity=0.029 Sum_probs=39.3
Q ss_pred chhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--hhhh---
Q 004760 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT--- 308 (732)
Q Consensus 234 ~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--~~~~--- 308 (732)
.+|...-++++|++. ||+.-.=..|+++|++.|++|.++.-.... .. + ++.++..+... .+..
T Consensus 4 ~~~~~~~~~~~vlVT------GatG~iG~~l~~~L~~~G~~V~~~~r~~~~--~~-l---~~~~~~~Dl~d~~~~~~~~~ 71 (321)
T 2pk3_A 4 SHHHHHHGSMRALIT------GVAGFVGKYLANHLTEQNVEVFGTSRNNEA--KL-P---NVEMISLDIMDSQRVKKVIS 71 (321)
T ss_dssp ---------CEEEEE------TTTSHHHHHHHHHHHHTTCEEEEEESCTTC--CC-T---TEEEEECCTTCHHHHHHHHH
T ss_pred cccccccCcceEEEE------CCCChHHHHHHHHHHHCCCEEEEEecCCcc--cc-c---eeeEEECCCCCHHHHHHHHH
Confidence 455666666676544 333344456888899999999988733222 11 2 66666544322 1222
Q ss_pred hcCccEEEeCCch
Q 004760 309 SMKADLVIAGSAV 321 (732)
Q Consensus 309 ~~k~DlVia~Sav 321 (732)
..++|+||...+.
T Consensus 72 ~~~~d~vih~A~~ 84 (321)
T 2pk3_A 72 DIKPDYIFHLAAK 84 (321)
T ss_dssp HHCCSEEEECCSC
T ss_pred hcCCCEEEEcCcc
Confidence 3458999776544
No 128
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=34.13 E-value=66 Score=31.87 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=40.6
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC----ChhHHHhCCcEEEEcCCCch----h---hh
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEPS----F---KT 308 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~----l~~el~~~gI~v~~~~~~~~----~---~~ 308 (732)
|+..|+++|+... .-.=..+|+.|++.|++|.++. .+... ...++...+.++.....+.. + ..
T Consensus 1 M~~~k~vlVTGas-----~gIG~aia~~l~~~G~~vv~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (258)
T 3oid_A 1 MEQNKCALVTGSS-----RGVGKAAAIRLAENGYNIVINY-ARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQ 74 (258)
T ss_dssp --CCCEEEESSCS-----SHHHHHHHHHHHHTTCEEEEEE-SSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEecCC-----chHHHHHHHHHHHCCCEEEEEc-CCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 3455777776432 2333467889999999998864 23221 22334444444433322221 1 11
Q ss_pred -----hcCccEEEeCCc
Q 004760 309 -----SMKADLVIAGSA 320 (732)
Q Consensus 309 -----~~k~DlVia~Sa 320 (732)
..++|++|.+..
T Consensus 75 ~~~~~~g~id~lv~nAg 91 (258)
T 3oid_A 75 QIDETFGRLDVFVNNAA 91 (258)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 248899988754
No 129
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=34.11 E-value=2.1e+02 Score=23.99 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=54.1
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEE-cCCCCh---hhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGT---KEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~-td~gG~---~EiVe~g~~Gll~~~ 675 (732)
.|.......+..+.+.. .|++++-.. +.+.-|..+++.+. ..+|+|. |..+.. .+.++.|..+++..|
T Consensus 28 ~v~~~~~~~~al~~l~~~~~dlvllD~~-~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP 106 (122)
T 3gl9_A 28 EVIEAENGQIALEKLSEFTPDLIVLXIM-MPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106 (122)
T ss_dssp EEEEESSHHHHHHHHTTBCCSEEEECSC-CSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESS
T ss_pred EEEEeCCHHHHHHHHHhcCCCEEEEecc-CCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCC
Confidence 34444444454455543 578887654 35556778888774 3578876 443432 233457889999999
Q ss_pred CCCcHHHHHHHHHHHhc
Q 004760 676 GHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~ 692 (732)
-+. +.|...+..+++
T Consensus 107 ~~~--~~L~~~i~~~l~ 121 (122)
T 3gl9_A 107 FSP--SQFIEEVKHLLN 121 (122)
T ss_dssp CCH--HHHHHHHHHHHC
T ss_pred CCH--HHHHHHHHHHhc
Confidence 888 999999988764
No 130
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=34.01 E-value=39 Score=37.22 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=46.5
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchhh
Q 004760 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCA 323 (732)
Q Consensus 252 ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~~ 323 (732)
...+|...+-+ |+.|.+.|++|++.=. ........|+..|++++.-.....+ ..+|+|+.+.++..
T Consensus 18 i~I~G~G~sgl--A~~l~~~G~~V~g~D~-~~~~~~~~L~~~gi~~~~g~~~~~~---~~~d~vV~spgi~~ 83 (469)
T 1j6u_A 18 VGIGGIGMSAV--ALHEFSNGNDVYGSNI-EETERTAYLRKLGIPIFVPHSADNW---YDPDLVIKTPAVRD 83 (469)
T ss_dssp ETTTSHHHHHH--HHHHHHTTCEEEEECS-SCCHHHHHHHHTTCCEESSCCTTSC---CCCSEEEECTTCCT
T ss_pred EEEcccCHHHH--HHHHHhCCCEEEEEcC-CCCHHHHHHHhCCCEEECCCCHHHC---CCCCEEEECCCcCC
Confidence 46888887766 9999999999987642 2333456788899999853222112 26899999987653
No 131
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=33.86 E-value=71 Score=27.43 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=28.4
Q ss_pred CeEEEEeCCCCC-CcHHHHHHHHHHHHHHC-CC-EEEEEEe
Q 004760 243 RKFILIFHELSM-TGAPLSMMELATELLSC-GA-TVSAVVL 280 (732)
Q Consensus 243 ~kIllI~h~ls~-gGA~~~~~eLA~~L~~~-G~-~V~vv~l 280 (732)
+|+++|+.+--. .......+.+|..+.+. |+ +|.++..
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~ 42 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLM 42 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEE
Confidence 467777666533 35566689999999999 99 9988874
No 132
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=33.70 E-value=1.5e+02 Score=25.79 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=51.9
Q ss_pred cEEEccchhhHHHHHHH---cCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEcCCCC----hhhhhccCceEEEECCC
Q 004760 607 AMLWTPATTRVASLYSA---ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGTDAGG----TKEIVEHNVTGLLHPPG 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa---ADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~td~gG----~~EiVe~g~~Gll~~~~ 676 (732)
.|......++....+.. .|++++-.. +.+.-|..+++.+. ..+|+|.-.... ..+.+..|..+++..+-
T Consensus 31 ~v~~~~~~~~a~~~l~~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~ 109 (154)
T 2qsj_A 31 RVEGAETVSDALAFLEADNTVDLILLDVN-LPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSA 109 (154)
T ss_dssp EEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTS
T ss_pred EEEEecCHHHHHHHHhccCCCCEEEEeCC-CCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCC
Confidence 35555555666666655 688887654 23345666776664 367887743322 33445677889998887
Q ss_pred CCcHHHHHHHHHHHhcC
Q 004760 677 HPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n 693 (732)
+. +.|..+|..++..
T Consensus 110 ~~--~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 110 DP--QVLIHAVSLILEG 124 (154)
T ss_dssp CH--HHHHHHHHHHHTT
T ss_pred CH--HHHHHHHHHHHcC
Confidence 77 9999999988764
No 133
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=33.69 E-value=95 Score=29.01 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=42.0
Q ss_pred eEEEEeCCCCCCc-HHHHHHHHHHHHHH-CCCEEEEEEeCCCCCChhHH-HhCCcEEEEcCCCch--hhhhcCccEEEeC
Q 004760 244 KFILIFHELSMTG-APLSMMELATELLS-CGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEPS--FKTSMKADLVIAG 318 (732)
Q Consensus 244 kIllI~h~ls~gG-A~~~~~eLA~~L~~-~G~~V~vv~l~~~g~l~~el-~~~gI~v~~~~~~~~--~~~~~k~DlVia~ 318 (732)
||++|..+ .+| ....+-.++..|.+ .|++|.++-+... ..+.. ...+. +...... ...-.++|.||.+
T Consensus 3 kilii~~S--~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~--~~~~~~~~~~~---~~~~~~~~~~~~l~~aD~ii~g 75 (198)
T 3b6i_A 3 KVLVLYYS--MYGHIETMARAVAEGASKVDGAEVVVKRVPET--MPPQLFEKAGG---KTQTAPVATPQELADYDAIIFG 75 (198)
T ss_dssp EEEEEECC--SSSHHHHHHHHHHHHHHTSTTCEEEEEECCCC--SCHHHHHHTTC---CCCCSCBCCGGGGGGCSEEEEE
T ss_pred eEEEEEeC--CCcHHHHHHHHHHHHHhhcCCCEEEEEEcccc--Cchhhhhhccc---ccccCchhhHHHHHHCCEEEEE
Confidence 78888877 466 45555667778877 8999999987654 22222 22222 1111111 3334578999776
Q ss_pred Cch
Q 004760 319 SAV 321 (732)
Q Consensus 319 Sav 321 (732)
+.+
T Consensus 76 sP~ 78 (198)
T 3b6i_A 76 TPT 78 (198)
T ss_dssp EEE
T ss_pred eCh
Confidence 543
No 134
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=33.43 E-value=1.7e+02 Score=25.65 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc-h-hhh--hcCccEEEeCCc
Q 004760 259 LSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-S-FKT--SMKADLVIAGSA 320 (732)
Q Consensus 259 ~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~-~-~~~--~~k~DlVia~Sa 320 (732)
..-..+|+.|.+.|++|.++. ......+.+...++.++...... . +.. -.++|+|+..+.
T Consensus 16 ~iG~~la~~L~~~g~~V~~id--~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 16 AAGVGLVRELTAAGKKVLAVD--KSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE--SCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred HHHHHHHHHHHHCCCeEEEEE--CCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 356778999999999998886 33333455667788877655433 2 332 247899987654
No 135
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=33.32 E-value=60 Score=35.25 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=45.8
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCc
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSA 320 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sa 320 (732)
.++||++| +.||+..+. |+.|.++||+|++.=.....+....|+ .|+++..-........ .+|+|+....
T Consensus 4 ~~~~v~vi----G~G~~G~~~---a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~--~~d~vV~s~g 73 (439)
T 2x5o_A 4 QGKNVVII----GLGLTGLSC---VDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLM--AADLIVASPG 73 (439)
T ss_dssp TTCCEEEE----CCHHHHHHH---HHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHH--TCSEEEECTT
T ss_pred CCCEEEEE----eecHHHHHH---HHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhc--cCCEEEeCCC
Confidence 35677665 556655554 788899999998876332222234566 8999875442222222 6899999876
Q ss_pred hh
Q 004760 321 VC 322 (732)
Q Consensus 321 v~ 322 (732)
+.
T Consensus 74 i~ 75 (439)
T 2x5o_A 74 IA 75 (439)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 136
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=33.31 E-value=67 Score=33.13 Aligned_cols=84 Identities=11% Similarity=0.111 Sum_probs=43.0
Q ss_pred ccccchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCCCCChhHHHhCCcEEEEcCCC-ch--
Q 004760 230 CDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGGLMPELARRKIKVLEDRGE-PS-- 305 (732)
Q Consensus 230 ~~~~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~-G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~-~~-- 305 (732)
|.-.+....+ +.++|++. ||+.-.=..|+++|.+. ||+|.+++- ............++.++..+.. ..
T Consensus 13 ~~~~~~~~~m-~~~~vlVt------GatG~iG~~l~~~L~~~~g~~V~~~~r-~~~~~~~~~~~~~v~~~~~Dl~~d~~~ 84 (372)
T 3slg_A 13 EAQTQGPGSM-KAKKVLIL------GVNGFIGHHLSKRILETTDWEVFGMDM-QTDRLGDLVKHERMHFFEGDITINKEW 84 (372)
T ss_dssp -----------CCCEEEEE------SCSSHHHHHHHHHHHHHSSCEEEEEES-CCTTTGGGGGSTTEEEEECCTTTCHHH
T ss_pred hhhhcCCccc-CCCEEEEE------CCCChHHHHHHHHHHhCCCCEEEEEeC-ChhhhhhhccCCCeEEEeCccCCCHHH
Confidence 4444455443 44665543 23333445678888887 999999873 2233333233468888876654 22
Q ss_pred hhh-hcCccEEEeCCch
Q 004760 306 FKT-SMKADLVIAGSAV 321 (732)
Q Consensus 306 ~~~-~~k~DlVia~Sav 321 (732)
+.. -.++|+||...+.
T Consensus 85 ~~~~~~~~d~Vih~A~~ 101 (372)
T 3slg_A 85 VEYHVKKCDVILPLVAI 101 (372)
T ss_dssp HHHHHHHCSEEEECBCC
T ss_pred HHHHhccCCEEEEcCcc
Confidence 222 2278999765443
No 137
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=33.20 E-value=1e+02 Score=30.71 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHCC-CEEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--hhhh-hcCccEEEeCCc
Q 004760 260 SMMELATELLSCG-ATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGSA 320 (732)
Q Consensus 260 ~~~eLA~~L~~~G-~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--~~~~-~~k~DlVia~Sa 320 (732)
.=..++++|.+.| ++|.+++-.........+...++.++..+... .+.. -..+|.|+....
T Consensus 17 iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 17 QGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 3445677888888 99998873222111245566788887655432 2333 236899977654
No 138
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=33.13 E-value=2.3e+02 Score=24.11 Aligned_cols=86 Identities=9% Similarity=0.041 Sum_probs=55.7
Q ss_pred CCCCcEEEccchhhHHHHHHH--------cCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEEc-CCCC---hhhhhc
Q 004760 603 NLSKAMLWTPATTRVASLYSA--------ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLGT-DAGG---TKEIVE 665 (732)
Q Consensus 603 ~l~~~V~f~G~~~dv~~lysa--------ADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~t-d~gG---~~EiVe 665 (732)
+....|.......+....+.. .|++++-.. +.+.-|.-+++.+. ..+|+|.. .... ..+.+.
T Consensus 31 g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~ 109 (143)
T 2qvg_A 31 SSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN-IPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFES 109 (143)
T ss_dssp CTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT-CTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTT
T ss_pred CCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC-CCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHh
Confidence 443356666666666666653 788887654 24445677777775 46787664 3332 234455
Q ss_pred cCceEEEECCCCCcHHHHHHHHHHHh
Q 004760 666 HNVTGLLHPPGHPGAQVLAQNLRYLL 691 (732)
Q Consensus 666 ~g~~Gll~~~~d~~~e~La~aL~~LL 691 (732)
.|..+++..|-+. +.|.+++....
T Consensus 110 ~g~~~~l~kP~~~--~~L~~~~~~~~ 133 (143)
T 2qvg_A 110 LNIRGHLIKPLDY--GEAIKLFWILQ 133 (143)
T ss_dssp TTCCEEEESSCCH--HHHHHHHHHHH
T ss_pred cCCCeEEECCCCH--HHHHHHHHHHH
Confidence 6788999998887 88888876543
No 139
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=32.89 E-value=55 Score=32.04 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=41.4
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC---ChhHHHhCCcEEEEcCCCch----hh---h---
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEPS----FK---T--- 308 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~---l~~el~~~gI~v~~~~~~~~----~~---~--- 308 (732)
..|.++|+.. +.-.=..+|++|++.|++|.++....... +.+++...+.++.....+.. +. .
T Consensus 3 ~~k~~lVTGa-----s~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 77 (246)
T 3osu_A 3 MTKSALVTGA-----SRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVV 77 (246)
T ss_dssp CSCEEEETTC-----SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECC-----CChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3456677532 33334578899999999998876222111 23344555544433322221 11 1
Q ss_pred --hcCccEEEeCCch
Q 004760 309 --SMKADLVIAGSAV 321 (732)
Q Consensus 309 --~~k~DlVia~Sav 321 (732)
..++|+++.+..+
T Consensus 78 ~~~g~id~lv~nAg~ 92 (246)
T 3osu_A 78 SQFGSLDVLVNNAGI 92 (246)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 2389999887654
No 140
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=32.87 E-value=72 Score=31.67 Aligned_cols=79 Identities=6% Similarity=-0.013 Sum_probs=42.8
Q ss_pred hhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC----ChhHHHhCCcEEEEcCCCch----h--
Q 004760 237 ARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEPS----F-- 306 (732)
Q Consensus 237 ~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~----l~~el~~~gI~v~~~~~~~~----~-- 306 (732)
.+-|...|+++|+... .-.=..+|++|++.|++|.++. .+... +..++...+.++.....+.. +
T Consensus 20 ~~~m~~~k~vlITGas-----~gIG~a~a~~l~~~G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 93 (272)
T 4e3z_A 20 FQSMSDTPVVLVTGGS-----RGIGAAVCRLAARQGWRVGVNY-AANREAADAVVAAITESGGEAVAIPGDVGNAADIAA 93 (272)
T ss_dssp ----CCSCEEEETTTT-----SHHHHHHHHHHHHTTCEEEEEE-SSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred hhhccCCCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEc-CCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 3445667788885433 2334578899999999997765 22221 22334444544443332222 1
Q ss_pred -hh-----hcCccEEEeCCch
Q 004760 307 -KT-----SMKADLVIAGSAV 321 (732)
Q Consensus 307 -~~-----~~k~DlVia~Sav 321 (732)
.. ..++|+||.+..+
T Consensus 94 ~~~~~~~~~g~id~li~nAg~ 114 (272)
T 4e3z_A 94 MFSAVDRQFGRLDGLVNNAGI 114 (272)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHhCCCCCEEEECCCC
Confidence 11 2389999887654
No 141
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=32.35 E-value=76 Score=31.45 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=37.0
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
..+++.|+..-+..|-.....+||..|++.|+.|.+|-+...++
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~ 60 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGP 60 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 35678888878888999999999999999999999998665554
No 142
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=32.28 E-value=1.6e+02 Score=29.93 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=40.9
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH----hCCcEEEEcCCCch--hhh---hc
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA----RRKIKVLEDRGEPS--FKT---SM 310 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~----~~gI~v~~~~~~~~--~~~---~~ 310 (732)
|.+++| +|+ ||+.-.=..|+++|.+.||+|.++.-... ....... ..++.++..+.... +.. ..
T Consensus 7 ~~~~~v-lVt-----GatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 79 (357)
T 1rkx_A 7 WQGKRV-FVT-----GHTGFKGGWLSLWLQTMGATVKGYSLTAP-TVPSLFETARVADGMQSEIGDIRDQNKLLESIREF 79 (357)
T ss_dssp HTTCEE-EEE-----TTTSHHHHHHHHHHHHTTCEEEEEESSCS-SSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred hCCCEE-EEE-----CCCchHHHHHHHHHHhCCCeEEEEeCCCc-ccchhhHhhccCCceEEEEccccCHHHHHHHHHhc
Confidence 344555 444 33334445678889999999988873322 2211111 24677665544321 222 33
Q ss_pred CccEEEeCCc
Q 004760 311 KADLVIAGSA 320 (732)
Q Consensus 311 k~DlVia~Sa 320 (732)
++|+||...+
T Consensus 80 ~~d~vih~A~ 89 (357)
T 1rkx_A 80 QPEIVFHMAA 89 (357)
T ss_dssp CCSEEEECCS
T ss_pred CCCEEEECCC
Confidence 6899977654
No 143
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=32.22 E-value=1.2e+02 Score=31.11 Aligned_cols=56 Identities=25% Similarity=0.202 Sum_probs=24.8
Q ss_pred cCcccccccccccchhhhhc-cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Q 004760 221 WSPEKRSGTCDRKGDFARFV-WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLS 281 (732)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~ 281 (732)
+.|-+|+..+...+...+.. ...|+++|+... .-.=..+|+.|++.|++|.++...
T Consensus 23 ~~~~~~~~~~~~~~~~~~m~~l~gk~~lVTGas-----~GIG~aia~~la~~G~~Vv~~~~~ 79 (317)
T 3oec_A 23 VDPVRRSTRVSARGQGARMNRLQGKVAFITGAA-----RGQGRTHAVRLAQDGADIVAIDLC 79 (317)
T ss_dssp -------------------CTTTTCEEEESSCS-----SHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccHHHHhhccccccccchhhccCCCEEEEeCCC-----cHHHHHHHHHHHHCCCeEEEEecc
Confidence 34555554444444444321 234677776433 233357889999999999988643
No 144
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=32.18 E-value=3.2e+02 Score=25.58 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=52.0
Q ss_pred cEEEccchhhHHHHHH---------------HcCEEEEccCCCCCCCcHHHHHHHH-------cCCCEEEcCC-C-C---
Q 004760 607 AMLWTPATTRVASLYS---------------AADVYVINSQGLGETFGRVTIEAMA-------FGVPVLGTDA-G-G--- 659 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys---------------aADv~V~pS~~~~Egfg~vilEAMA-------~GlPVI~td~-g-G--- 659 (732)
.|.......+..+++. ..|++++-.. +.+.-|.-+++.+. ..+|||..-. . .
T Consensus 88 ~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~-lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~ 166 (206)
T 3mm4_A 88 EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ-MPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEE 166 (206)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC-CSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHH
T ss_pred eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC-CCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHH
Confidence 4555554455555554 3688888665 35556777777764 4678876433 3 2
Q ss_pred hhhhhccCceEEEECCCCCcHHHHHHHHHHHhcCHHH
Q 004760 660 TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (732)
Q Consensus 660 ~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n~~~ 696 (732)
..+.++.+..+++..+-+ .|.++|..+++....
T Consensus 167 ~~~~~~~Ga~~~l~KP~~----~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 167 ARETIQAGMDAFLDKSLN----QLANVIREIESKRHL 199 (206)
T ss_dssp HHHHHHHTCSEEEETTCT----THHHHHHHHC-----
T ss_pred HHHHHhCCCCEEEcCcHH----HHHHHHHHHHhhhHH
Confidence 233455678899998765 599999988875443
No 145
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=32.03 E-value=1.1e+02 Score=30.86 Aligned_cols=64 Identities=13% Similarity=-0.000 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCC--------CChhHHH---hCCcEEEEcCCCc--hhhh---hcCccEEEeCCch
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKRG--------GLMPELA---RRKIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~g--------~l~~el~---~~gI~v~~~~~~~--~~~~---~~k~DlVia~Sav 321 (732)
.-.=..|+++|++.||+|.++.-.... ....++. ..++.++..+... .+.. ..++|+||...+.
T Consensus 12 G~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~A~~ 91 (348)
T 1ek6_A 12 GYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGL 91 (348)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCEEEEEECCSC
T ss_pred CHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 344457788899999999988632222 1112222 2467766654432 2332 2379999776543
No 146
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=31.89 E-value=54 Score=33.33 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=44.2
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch-------hhhhcCccEE
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS-------FKTSMKADLV 315 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~-------~~~~~k~DlV 315 (732)
=|+++|+.. +.=.=..+|+.|++.|++|.++.........++++..|.++.....+-. .....+.|++
T Consensus 9 GKvalVTGa-----s~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiL 83 (247)
T 4hp8_A 9 GRKALVTGA-----NTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDIL 83 (247)
T ss_dssp TCEEEETTT-----TSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEE
T ss_pred CCEEEEeCc-----CCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 367777633 3333456789999999999877632222234556667766544333222 2235679999
Q ss_pred EeCCc
Q 004760 316 IAGSA 320 (732)
Q Consensus 316 ia~Sa 320 (732)
+.|..
T Consensus 84 VNNAG 88 (247)
T 4hp8_A 84 VNNAG 88 (247)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 88754
No 147
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=31.65 E-value=2.6e+02 Score=24.32 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=54.9
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEcCC-CC---hhhhhccC-ceEEEECCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGTDA-GG---TKEIVEHN-VTGLLHPPG 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~td~-gG---~~EiVe~g-~~Gll~~~~ 676 (732)
.|......++....+.. .|++++-.. +.+.-|..+++.+. ..+|+|.-.. .. ..+.+..+ ..+++..+-
T Consensus 40 ~v~~~~~~~~a~~~l~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~ 118 (153)
T 3hv2_A 40 TLHFARDATQALQLLASREVDLVISAAH-LPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPW 118 (153)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEESC-CSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSC
T ss_pred EEEEECCHHHHHHHHHcCCCCEEEEeCC-CCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCC
Confidence 45554444555555544 578887665 35556777777664 3678876443 33 23344566 789999988
Q ss_pred CCcHHHHHHHHHHHhcC
Q 004760 677 HPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n 693 (732)
+. +.|..+|..+++.
T Consensus 119 ~~--~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 119 DD--QELLLALRQALEH 133 (153)
T ss_dssp CH--HHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHH
Confidence 87 9999999988764
No 148
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=31.51 E-value=88 Score=30.41 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=34.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK 282 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~ 282 (732)
|++.|+..-+..|......+||..|++.|+.|.+|-+..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 677787778888999999999999999999999998664
No 149
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=31.46 E-value=88 Score=30.60 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=39.9
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCC--cEEEEcCCCch--hhh--------hc
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRK--IKVLEDRGEPS--FKT--------SM 310 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~g--I~v~~~~~~~~--~~~--------~~ 310 (732)
.|+++|+.. +.-.=..+|+.|++.|++|.++.-.....+..++...+ +.++..+.... +.. ..
T Consensus 7 ~k~vlVTGa-----s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 7 DKLAVITGG-----ANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFG 81 (249)
T ss_dssp TCEEEEETT-----TSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCC-----CcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 355667643 22334568889999999988876222122333444444 33343332221 111 23
Q ss_pred CccEEEeCCch
Q 004760 311 KADLVIAGSAV 321 (732)
Q Consensus 311 k~DlVia~Sav 321 (732)
++|++|.+..+
T Consensus 82 ~id~lv~nAg~ 92 (249)
T 2ew8_A 82 RCDILVNNAGI 92 (249)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999887543
No 150
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=31.44 E-value=1.5e+02 Score=25.48 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=46.9
Q ss_pred HHcCEEEEccCCCCCCCcHHHHHHHHc---CCCEEEc-CCCC---hhhhhccCceEEEECCCCCcHHHHHHHHHHHhcC
Q 004760 622 SAADVYVINSQGLGETFGRVTIEAMAF---GVPVLGT-DAGG---TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 622 saADv~V~pS~~~~Egfg~vilEAMA~---GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n 693 (732)
...|++++-.. +.+.-|..+++.+.. .+|+|.- .... ..+.+..|..+++..+-+. +.|..+|..+++.
T Consensus 66 ~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~L~~~i~~~~~~ 141 (146)
T 4dad_A 66 DAFDILMIDGA-ALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEP--RALDDALKRAAAQ 141 (146)
T ss_dssp TTCSEEEEECT-TCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCH--HHHHHHHHHHHHT
T ss_pred CCCCEEEEeCC-CCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCH--HHHHHHHHHHHhh
Confidence 35788888665 344456666666543 6777764 3333 3344567889999998887 9999999888753
No 151
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=31.10 E-value=94 Score=30.62 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=41.6
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC---ChhHHHhCCcEEEEcCCCch----h---hh----
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEPS----F---KT---- 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~---l~~el~~~gI~v~~~~~~~~----~---~~---- 308 (732)
.|+++|+... .-.=..+|+.|++.|++|.++.-. ... +..++...+.++.....+.. + ..
T Consensus 7 ~k~vlVTGas-----~GIG~aia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 7 NATVAVIGAG-----DYIGAEIAKKFAAEGFTVFAGRRN-GEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp SCEEEEECCS-----SHHHHHHHHHHHHTTCEEEEEESS-GGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 4667776333 233457889999999998877622 222 23445555555443333322 1 11
Q ss_pred hcCccEEEeCCch
Q 004760 309 SMKADLVIAGSAV 321 (732)
Q Consensus 309 ~~k~DlVia~Sav 321 (732)
..++|++|.+..+
T Consensus 81 ~g~id~lv~nAg~ 93 (252)
T 3h7a_A 81 HAPLEVTIFNVGA 93 (252)
T ss_dssp HSCEEEEEECCCC
T ss_pred hCCceEEEECCCc
Confidence 2488999887653
No 152
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=31.05 E-value=59 Score=32.82 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=36.7
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC-CCCC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK-RGGL 286 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~-~g~l 286 (732)
.|++.|+..-+..|-.....+||..|++.|+.|.+|=+.. .+.+
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l 48 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTS 48 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCH
Confidence 4678888777888999999999999999999999998665 4433
No 153
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=31.02 E-value=74 Score=31.22 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=38.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch----hhh--------hcC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS----FKT--------SMK 311 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~----~~~--------~~k 311 (732)
|.++|+... .-.=..+|++|++.|++|.++.-........++...+.++.....+.. +.. ..+
T Consensus 5 k~vlVTGas-----~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (255)
T 2q2v_A 5 KTALVTGST-----SGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGG 79 (255)
T ss_dssp CEEEESSCS-----SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 456665332 233457889999999998776522221122344444444433332221 111 237
Q ss_pred ccEEEeCCc
Q 004760 312 ADLVIAGSA 320 (732)
Q Consensus 312 ~DlVia~Sa 320 (732)
+|++|.+..
T Consensus 80 id~lv~~Ag 88 (255)
T 2q2v_A 80 VDILVNNAG 88 (255)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999987754
No 154
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=30.98 E-value=3.5e+02 Score=25.66 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=54.3
Q ss_pred EEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHHc--CCCEEEc-CC---CChhhhhccCceEEEECCCCCc
Q 004760 608 MLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAF--GVPVLGT-DA---GGTKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 608 V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA~--GlPVI~t-d~---gG~~EiVe~g~~Gll~~~~d~~ 679 (732)
|.......+....+. ..|++++-.. +.+.-|..+++.+.. .+|+|.- .. ....+.++.|..|++..+-+.
T Consensus 32 v~~~~~~~~al~~l~~~~~dlvilD~~-l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~- 109 (238)
T 2gwr_A 32 TAVIGDGTQALTAVRELRPDLVLLDLM-LPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKP- 109 (238)
T ss_dssp EEEECCGGGHHHHHHHHCCSEEEEESS-CSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCH-
T ss_pred EEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCH-
Confidence 544444445444444 3688887654 344456777777653 6888763 22 234556678889999998887
Q ss_pred HHHHHHHHHHHhc
Q 004760 680 AQVLAQNLRYLLK 692 (732)
Q Consensus 680 ~e~La~aL~~LL~ 692 (732)
+.|..+|..++.
T Consensus 110 -~~L~~~i~~~~~ 121 (238)
T 2gwr_A 110 -KELVARVRARLR 121 (238)
T ss_dssp -HHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHh
Confidence 999999998765
No 155
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=30.76 E-value=48 Score=35.33 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--C---------ChhHHHhCCcEEEEcCCCchhhhhc
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--G---------LMPELARRKIKVLEDRGEPSFKTSM 310 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--~---------l~~el~~~gI~v~~~~~~~~~~~~~ 310 (732)
++++++| |+...-+++|..|.+.|.+|+++.....- . +.+.+++.||+++.......+.+..
T Consensus 146 ~~~vvVI-------GgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~ig~~~ 218 (385)
T 3klj_A 146 KGKAFII-------GGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLI 218 (385)
T ss_dssp HSCEEEE-------CCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGCHHHH
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEcCeEE
Confidence 6888887 44556789999999999999988633211 1 1245678899998655444444566
Q ss_pred CccEEEeCC
Q 004760 311 KADLVIAGS 319 (732)
Q Consensus 311 k~DlVia~S 319 (732)
.+|+|+..+
T Consensus 219 ~~D~vv~a~ 227 (385)
T 3klj_A 219 RSSCVITAV 227 (385)
T ss_dssp HHSEEEECC
T ss_pred ecCeEEECc
Confidence 788887654
No 156
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=30.61 E-value=2.5e+02 Score=23.93 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=54.4
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEc-CCCCh---hhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DAGGT---KEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~t-d~gG~---~EiVe~g~~Gll~~~ 675 (732)
.|.......+....+.. .|++++-.. +.+.-|.-+++.+.. .+|+|.. ..+.. .+.++.|..+++..|
T Consensus 30 ~v~~~~~~~~al~~~~~~~~dlvl~D~~-lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP 108 (136)
T 3t6k_A 30 EVRRAASGEEALQQIYKNLPDALICDVL-LPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKP 108 (136)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEESC-CSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETT
T ss_pred EEEEeCCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCC
Confidence 34444333444444443 588887654 345567777777743 5788764 33332 234567889999999
Q ss_pred CCCcHHHHHHHHHHHhcCH
Q 004760 676 GHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n~ 694 (732)
-+. +.|...+..++...
T Consensus 109 ~~~--~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 109 FEP--QELVYRVKNILART 125 (136)
T ss_dssp CCH--HHHHHHHHHHHHC-
T ss_pred CCH--HHHHHHHHHHHhcc
Confidence 887 99999999887643
No 157
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=30.48 E-value=41 Score=34.58 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=40.4
Q ss_pred cchhhhhccCC---eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEE--EEcC-CCch-
Q 004760 233 KGDFARFVWSR---KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKV--LEDR-GEPS- 305 (732)
Q Consensus 233 ~~~~~~~~~~~---kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v--~~~~-~~~~- 305 (732)
++-|-+-|..| |+++|+...+ | .=..+|+.|++.|++|.++.. ....+.+..++.+-++ +..+ ....
T Consensus 16 ~n~~~~~Ms~rL~gKvalVTGas~--G---IG~aiA~~la~~Ga~V~i~~r-~~~~l~~~~~~~g~~~~~~~~Dv~~~~~ 89 (273)
T 4fgs_A 16 ENLYFQSMTQRLNAKIAVITGATS--G---IGLAAAKRFVAEGARVFITGR-RKDVLDAAIAEIGGGAVGIQADSANLAE 89 (273)
T ss_dssp ---------CTTTTCEEEEESCSS--H---HHHHHHHHHHHTTCEEEEEES-CHHHHHHHHHHHCTTCEEEECCTTCHHH
T ss_pred cccchhhhcchhCCCEEEEeCcCC--H---HHHHHHHHHHHCCCEEEEEEC-CHHHHHHHHHHcCCCeEEEEecCCCHHH
Confidence 34444555443 8899985433 2 234578999999999987752 2222333233333222 2222 2222
Q ss_pred --------hhhhcCccEEEeCCc
Q 004760 306 --------FKTSMKADLVIAGSA 320 (732)
Q Consensus 306 --------~~~~~k~DlVia~Sa 320 (732)
..+..++|+++.|..
T Consensus 90 v~~~~~~~~~~~G~iDiLVNNAG 112 (273)
T 4fgs_A 90 LDRLYEKVKAEAGRIDVLFVNAG 112 (273)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 122458999988754
No 158
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=30.00 E-value=1.6e+02 Score=29.53 Aligned_cols=67 Identities=18% Similarity=0.041 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH----hCCcEEEEcCCCc--hhhh---hcCccEEEeCCch
Q 004760 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA----RRKIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (732)
Q Consensus 255 gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~----~~gI~v~~~~~~~--~~~~---~~k~DlVia~Sav 321 (732)
||+.-.=..|+++|.+.|++|.+++-.........+. ..++.++..+... .+.. ..++|+||...+.
T Consensus 21 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~ 96 (335)
T 1rpn_A 21 GITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQ 96 (335)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEECccc
Confidence 3334445678888999999999887333221112222 2356666544322 1222 3368999776543
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=30.00 E-value=1.6e+02 Score=32.59 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=50.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-Chh----HHHhCCcEEEEcCCCch--------hhh-
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMP----ELARRKIKVLEDRGEPS--------FKT- 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~-l~~----el~~~gI~v~~~~~~~~--------~~~- 308 (732)
.++++++.- ...|-...+..||..|.+.|+.|.++......+ ... .-...+++++....... +..
T Consensus 100 p~vIlivG~-~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 100 PTILLMVGI-QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEEECc-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 456666554 777888899999999999999999998543222 112 22467888886543221 112
Q ss_pred -hcCccEEEeCCc
Q 004760 309 -SMKADLVIAGSA 320 (732)
Q Consensus 309 -~~k~DlVia~Sa 320 (732)
...+|+||.-++
T Consensus 179 ~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KSKGVDIIIVDTA 191 (443)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 346999988754
No 160
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=29.99 E-value=82 Score=32.29 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=38.2
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
+.|++.|+...+..|......+||..|++.|..|.+|-+.-..+
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~ 134 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKG 134 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCC
Confidence 45889998888889999999999999999999999998665544
No 161
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=29.69 E-value=1.6e+02 Score=29.40 Aligned_cols=59 Identities=12% Similarity=-0.034 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch-hhh-hcCccEEEeCCc
Q 004760 257 APLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS-FKT-SMKADLVIAGSA 320 (732)
Q Consensus 257 A~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~-~~~-~~k~DlVia~Sa 320 (732)
+...=..|+.+|.+.|++|.+++-. ..... +. ++.++..+.... +.. -.++|+||...+
T Consensus 11 tG~iG~~l~~~L~~~g~~V~~~~r~--~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 11 TGFLGQYVVESIKNDGNTPIILTRS--IGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESC--CC--------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CcHHHHHHHHHHHhCCCEEEEEeCC--CCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence 3444457788999999999888733 22222 33 788777665521 322 238999976543
No 162
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=29.20 E-value=48 Score=36.27 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=28.6
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLS 281 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~ 281 (732)
.+|+++. .-..|=-.-|++||++|+++||+|++++..
T Consensus 9 ~~vl~~p--~p~~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 9 PHVVMIP--YPVQGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp CEEEEEC--CSSHHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CEEEEec--CccchhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4666664 333566677999999999999999999854
No 163
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=29.04 E-value=2.4e+02 Score=23.16 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=51.7
Q ss_pred EEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEcCC----CChhhhhccCceEEEECCC
Q 004760 608 MLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGTDA----GGTKEIVEHNVTGLLHPPG 676 (732)
Q Consensus 608 V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~td~----gG~~EiVe~g~~Gll~~~~ 676 (732)
+.......+...++. ..|++++-.. +.+.-|..+++.+.. .+|+|.... ....+.++.|..+++..|-
T Consensus 28 v~~~~~~~~a~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 106 (124)
T 1mb3_A 28 TLQTREGLSALSIARENKPDLILMDIQ-LPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 106 (124)
T ss_dssp EEEESCHHHHHHHHHHHCCSEEEEESB-CSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSC
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCC
Confidence 443333334434443 3688887654 344456777777753 578876432 2234455678889999988
Q ss_pred CCcHHHHHHHHHHHhc
Q 004760 677 HPGAQVLAQNLRYLLK 692 (732)
Q Consensus 677 d~~~e~La~aL~~LL~ 692 (732)
+. +.|...+..++.
T Consensus 107 ~~--~~l~~~i~~~~~ 120 (124)
T 1mb3_A 107 SV--VHFLETIKRLLE 120 (124)
T ss_dssp CH--HHHHHHHHHHHS
T ss_pred CH--HHHHHHHHHHHh
Confidence 77 899999988765
No 164
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=28.87 E-value=1.2e+02 Score=31.44 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCCC---ChhHHH------hC-CcEEEEcCCCc--hhhh---hcCccEEEeCCch
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKRGG---LMPELA------RR-KIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~g~---l~~el~------~~-gI~v~~~~~~~--~~~~---~~k~DlVia~Sav 321 (732)
.-.=..|+.+|.+.|++|.+++-..... ..+.+. .. ++.++..+... .+.. ..++|+||...+.
T Consensus 38 G~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~ 116 (381)
T 1n7h_A 38 GQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQ 116 (381)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred chHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCCEEEECCcc
Confidence 3344567888999999998887332221 011110 11 56666544322 1222 3368999776543
No 165
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=28.67 E-value=2.6e+02 Score=23.49 Aligned_cols=85 Identities=9% Similarity=0.078 Sum_probs=54.2
Q ss_pred cEEEccchhhHHHHHHH---cCEEEEccCCCCCCCcHHHHHHHHc----CCCEEEcC-CCC---hhhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA---ADVYVINSQGLGETFGRVTIEAMAF----GVPVLGTD-AGG---TKEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa---ADv~V~pS~~~~Egfg~vilEAMA~----GlPVI~td-~gG---~~EiVe~g~~Gll~~~ 675 (732)
.|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|+|... ... ..+.+..|..+++..+
T Consensus 33 ~v~~~~~~~~a~~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP 111 (136)
T 3hdv_A 33 DAVGADGAEEARLYLHYQKRIGLMITDLR-MQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKP 111 (136)
T ss_dssp CEEEESSHHHHHHHHHHCTTEEEEEECSC-CSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred eEEEeCCHHHHHHHHHhCCCCcEEEEecc-CCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCC
Confidence 34444444444444432 577777654 355567788887754 46777643 333 3344566889999999
Q ss_pred CCCcHHHHHHHHHHHhcCH
Q 004760 676 GHPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n~ 694 (732)
-+. +.|..+|.+++...
T Consensus 112 ~~~--~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 112 VDL--GKLLELVNKELKIG 128 (136)
T ss_dssp CCH--HHHHHHHHHHHC--
T ss_pred CCH--HHHHHHHHHHhcCc
Confidence 887 99999999987754
No 166
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=28.14 E-value=1.6e+02 Score=28.02 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCCc-HHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 242 SRKFILIFHELSMTG-APLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 242 ~~kIllI~h~ls~gG-A~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
..||++|..+. +| ....+-.++..|.+.|++|.++-+...
T Consensus 6 mmkilii~~S~--~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 6 PVKLAIVFYSS--TGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CCEEEEEECCS--SSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCeEEEEEECC--CChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 46899998876 55 555566778888889999999987654
No 167
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.14 E-value=2.7e+02 Score=23.49 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=50.7
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH--c-CCCEEEc-CCCC---hhhhhccCceEEEECCC-
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA--F-GVPVLGT-DAGG---TKEIVEHNVTGLLHPPG- 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA--~-GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~- 676 (732)
.|.......+....+.. .|++++|. .-|.-+++.+. . .+|+|.- .... ..+.+..|..+++..+-
T Consensus 44 ~v~~~~~~~~al~~l~~~~~dlvi~~~-----~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~ 118 (137)
T 2pln_A 44 MADVTESLEDGEYLMDIRNYDLVMVSD-----KNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYR 118 (137)
T ss_dssp EEEEESCHHHHHHHHHHSCCSEEEECS-----TTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCS
T ss_pred EEEEeCCHHHHHHHHHcCCCCEEEEcC-----ccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCC
Confidence 45554444555555544 57877332 34556666664 3 7787764 3332 33445678899999987
Q ss_pred CCcHHHHHHHHHHHhcC
Q 004760 677 HPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n 693 (732)
+. +.|...|..++..
T Consensus 119 ~~--~~l~~~i~~~~~~ 133 (137)
T 2pln_A 119 SI--KALVARIEARLRF 133 (137)
T ss_dssp CH--HHHHHHHHHHTC-
T ss_pred CH--HHHHHHHHHHHhh
Confidence 87 8999999988764
No 168
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=28.02 E-value=1.3e+02 Score=29.13 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=39.5
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH--hCCcEEEEcCCCch--hhh--------hc
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA--RRKIKVLEDRGEPS--FKT--------SM 310 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~--~~gI~v~~~~~~~~--~~~--------~~ 310 (732)
.|.++|+.. +.-.=..+|++|++.|++|.++.-. ...+..... ...+.++..+.... +.. ..
T Consensus 12 ~k~vlVTGa-----sggiG~~~a~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (265)
T 2o23_A 12 GLVAVITGG-----ASGLGLATAERLVGQGASAVLLDLP-NSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFG 85 (265)
T ss_dssp TCEEEEETT-----TSHHHHHHHHHHHHTTCEEEEEECT-TSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECC-----CChHHHHHHHHHHHCCCEEEEEeCC-cHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 355666533 2333457888999999998887632 222222112 22455554443321 211 22
Q ss_pred CccEEEeCCc
Q 004760 311 KADLVIAGSA 320 (732)
Q Consensus 311 k~DlVia~Sa 320 (732)
++|+||.+..
T Consensus 86 ~id~li~~Ag 95 (265)
T 2o23_A 86 RVDVAVNCAG 95 (265)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 7999987754
No 169
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.96 E-value=3e+02 Score=23.86 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=53.6
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEcCC-CC---hhhhhccC-ceEEEECCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGTDA-GG---TKEIVEHN-VTGLLHPPG 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~td~-gG---~~EiVe~g-~~Gll~~~~ 676 (732)
.|.......+...++.. .|++++-.. +.+.-|..+++.+. ..+|+|.-.. .. ..+.+..+ ..+++..+-
T Consensus 33 ~v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~ 111 (154)
T 2rjn_A 33 NIITFTSPLDALEALKGTSVQLVISDMR-MPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPW 111 (154)
T ss_dssp EEEEESCHHHHHHHHTTSCCSEEEEESS-CSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSC
T ss_pred eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCC
Confidence 45544444555555543 588887654 24445666666664 3678776433 32 23334455 789999988
Q ss_pred CCcHHHHHHHHHHHhcCHH
Q 004760 677 HPGAQVLAQNLRYLLKNPS 695 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~~ 695 (732)
+. +.|...|..++....
T Consensus 112 ~~--~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 112 ED--EDVFKVVEKGLQLAF 128 (154)
T ss_dssp CH--HHHHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHHHH
Confidence 77 899999998876443
No 170
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=27.87 E-value=81 Score=29.56 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=29.6
Q ss_pred CCeEEEEeCCCCCCc-HHHHHHHHHHHHHHCCCEEEEEEeCC
Q 004760 242 SRKFILIFHELSMTG-APLSMMELATELLSCGATVSAVVLSK 282 (732)
Q Consensus 242 ~~kIllI~h~ls~gG-A~~~~~eLA~~L~~~G~~V~vv~l~~ 282 (732)
..||++|..+. +| ....+-.++..|.+.|++|.++.+..
T Consensus 5 M~kilii~~S~--~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 5 SPYILVLYYSR--HGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CCEEEEEECCS--SSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred cceEEEEEeCC--CChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 35898888874 55 55556677888888999999987654
No 171
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=27.80 E-value=1.2e+02 Score=29.66 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=37.5
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh--CCcEEEEcCCCch--hhh--------hc
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPS--FKT--------SM 310 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~--~gI~v~~~~~~~~--~~~--------~~ 310 (732)
.|+++|+... .-.=..+|++|++.|++|.++.... ..+...... ..+.++..+.... +.. ..
T Consensus 7 ~k~~lVTGas-----~gIG~aia~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 7 SRVFIVTGAS-----SGLGAAVTRMLAQEGATVLGLDLKP-PAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFG 80 (257)
T ss_dssp TCEEEEESTT-----SHHHHHHHHHHHHTTCEEEEEESSC-C------------CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCC-----CHHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4667776433 2233568899999999998876332 222221111 2344444433221 111 23
Q ss_pred CccEEEeCCch
Q 004760 311 KADLVIAGSAV 321 (732)
Q Consensus 311 k~DlVia~Sav 321 (732)
++|++|.+..+
T Consensus 81 ~id~lv~nAg~ 91 (257)
T 3tpc_A 81 HVHGLVNCAGT 91 (257)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 89999887543
No 172
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=27.75 E-value=1.2e+02 Score=29.13 Aligned_cols=40 Identities=25% Similarity=0.141 Sum_probs=34.3
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
|++.|+..-+..|......+||..|++.|+.|.+|-+...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 5777777777889999999999999999999999986553
No 173
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=27.68 E-value=66 Score=32.64 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=44.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--CChhHHHhCCcEEEEcCCCch------------hhh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELARRKIKVLEDRGEPS------------FKT 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--~l~~el~~~gI~v~~~~~~~~------------~~~ 308 (732)
-|+++|+...+ =.=..+|+.|++.|+.|.++...... ...+++...|.+++....+-. ..+
T Consensus 7 gKvalVTGas~-----GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 7 NKVVIVTGAGS-----GIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp TCEEEEETTTS-----HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-----HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46778874332 23345788999999998776522111 134566667766655444433 222
Q ss_pred hcCccEEEeCCch
Q 004760 309 SMKADLVIAGSAV 321 (732)
Q Consensus 309 ~~k~DlVia~Sav 321 (732)
-.++|+++.|..+
T Consensus 82 ~G~iDiLVNNAGi 94 (254)
T 4fn4_A 82 YSRIDVLCNNAGI 94 (254)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCcc
Confidence 4589999888643
No 174
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=27.57 E-value=1.2e+02 Score=28.59 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=35.5
Q ss_pred HHHHHHHHHH-HCCCEEEEEEeCCCCC-ChhHH--HhCCcEEEEcCCCch--hhh-hcCccEEEeCCch
Q 004760 260 SMMELATELL-SCGATVSAVVLSKRGG-LMPEL--ARRKIKVLEDRGEPS--FKT-SMKADLVIAGSAV 321 (732)
Q Consensus 260 ~~~eLA~~L~-~~G~~V~vv~l~~~g~-l~~el--~~~gI~v~~~~~~~~--~~~-~~k~DlVia~Sav 321 (732)
.=..+|++|+ +.|++|.++. +... -.+++ ...++.++..+.... +.. -..+|+||.+...
T Consensus 17 iG~~~~~~l~~~~g~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 17 IAQXLTATLLTYTDMHITLYG--RQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp HHHHHHHHHHHHCCCEEEEEE--SSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred HHHHHHHHHHhcCCceEEEEe--cCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 3356778888 8999998876 2222 22334 345666665544322 322 2378999877543
No 175
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=27.33 E-value=72 Score=31.90 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=41.2
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC----ChhHHHhCCcEEEEcCCCch----hh---h
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEPS----FK---T 308 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~----l~~el~~~gI~v~~~~~~~~----~~---~ 308 (732)
|...|+++|+...+ -.=..+|++|++.|++|.++. ..... +..++...+.++.....+.. +. .
T Consensus 24 ~~~~k~~lVTGas~-----GIG~aia~~la~~G~~Vv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 97 (267)
T 3u5t_A 24 METNKVAIVTGASR-----GIGAAIAARLASDGFTVVINY-AGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFA 97 (267)
T ss_dssp ---CCEEEEESCSS-----HHHHHHHHHHHHHTCEEEEEE-SSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCEEEEeCCCC-----HHHHHHHHHHHHCCCEEEEEc-CCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 34567788874432 233468889999999998765 33222 22334444444433222222 11 1
Q ss_pred -----hcCccEEEeCCch
Q 004760 309 -----SMKADLVIAGSAV 321 (732)
Q Consensus 309 -----~~k~DlVia~Sav 321 (732)
..++|++|.|..+
T Consensus 98 ~~~~~~g~iD~lvnnAG~ 115 (267)
T 3u5t_A 98 TAEEAFGGVDVLVNNAGI 115 (267)
T ss_dssp HHHHHHSCEEEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2489999888643
No 176
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=27.28 E-value=45 Score=33.21 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=29.2
Q ss_pred cCCeEEEEeCCCCCCcHHHH-HHHHHHHHHHCCCEEEEEEeCCCC
Q 004760 241 WSRKFILIFHELSMTGAPLS-MMELATELLSCGATVSAVVLSKRG 284 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~-~~eLA~~L~~~G~~V~vv~l~~~g 284 (732)
.+|||++.+.. ++|..- ..+|++.|.+.|++|.+|. ++..
T Consensus 4 ~~k~IllgiTG---siaayk~~~~ll~~L~~~g~eV~vv~-T~~A 44 (207)
T 3mcu_A 4 KGKRIGFGFTG---SHCTYEEVMPHLEKLIAEGAEVRPVV-SYTV 44 (207)
T ss_dssp TTCEEEEEECS---CGGGGTTSHHHHHHHHHTTCEEEEEE-CC--
T ss_pred CCCEEEEEEEC---hHHHHHHHHHHHHHHHhCCCEEEEEE-ehHH
Confidence 45788877543 456554 8899999999999999998 4433
No 177
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.28 E-value=2.8e+02 Score=23.34 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=55.8
Q ss_pred EEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEE-cCCCCh---hhhhccCceEEEECCC
Q 004760 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGT---KEIVEHNVTGLLHPPG 676 (732)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~-td~gG~---~EiVe~g~~Gll~~~~ 676 (732)
|......++....+.. .|++++-.. +.+.-|..+++.+.. .+|+|. |+.... .+.+..|..+++..+-
T Consensus 37 v~~~~~~~~a~~~l~~~~~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~ 115 (143)
T 3cnb_A 37 IKIAYNPFDAGDLLHTVKPDVVMLDLM-MVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPL 115 (143)
T ss_dssp EEEECSHHHHHHHHHHTCCSEEEEETT-CTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSC
T ss_pred EEEECCHHHHHHHHHhcCCCEEEEecc-cCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCC
Confidence 5555444555555544 688887664 344557777877754 567775 444332 3445678889999988
Q ss_pred CCcHHHHHHHHHHHhcCH
Q 004760 677 HPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~ 694 (732)
+. +.|...+..+++..
T Consensus 116 ~~--~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 116 NF--TLLEKTIKQLVEQK 131 (143)
T ss_dssp CH--HHHHHHHHHHHHTT
T ss_pred CH--HHHHHHHHHHHHhh
Confidence 77 99999999887643
No 178
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=27.19 E-value=1.4e+02 Score=32.67 Aligned_cols=69 Identities=26% Similarity=0.354 Sum_probs=45.3
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCch
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav 321 (732)
++|.+| ++||...+ -+|+.|.+.|++|++.-. ......+.|+..|+++..-.....+ ..+|+|+...++
T Consensus 19 ~~i~vi----G~G~sG~s--~~A~~l~~~G~~V~~~D~-~~~~~~~~l~~~gi~~~~g~~~~~~---~~a~~vv~s~~i 87 (475)
T 1p3d_A 19 QQIHFI----GIGGAGMS--GIAEILLNEGYQISGSDI-ADGVVTQRLAQAGAKIYIGHAEEHI---EGASVVVVSSAI 87 (475)
T ss_dssp CEEEEE----TTTSTTHH--HHHHHHHHHTCEEEEEES-CCSHHHHHHHHTTCEEEESCCGGGG---TTCSEEEECTTS
T ss_pred CEEEEE----eecHHHHH--HHHHHHHhCCCEEEEECC-CCCHHHHHHHhCCCEEECCCCHHHc---CCCCEEEECCCC
Confidence 566554 66666544 256777889999998763 2334456788899999754333222 368999888765
No 179
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=27.06 E-value=1.4e+02 Score=30.40 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh-CCcEEEEcCCCch--hhh---hcCccEEEeCCch
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELAR-RKIKVLEDRGEPS--FKT---SMKADLVIAGSAV 321 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~-~gI~v~~~~~~~~--~~~---~~k~DlVia~Sav 321 (732)
.-.=..|+++|++.|++|.++.-.... ....+.. .++.++..+.... +.. ..++|+||...+.
T Consensus 31 G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~ 99 (333)
T 2q1w_A 31 GQIGSHIAELLLERGDKVVGIDNFATG-RREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS 99 (333)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSSC-CGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCCcc-chhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence 334456788899999999988733222 2222211 3566665443321 222 3459999776543
No 180
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=27.02 E-value=72 Score=30.39 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=31.0
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEE
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAV 278 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv 278 (732)
|++.|+..-+..|-.....+||..|++.|+.|.++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 57788888888899999999999999999999875
No 181
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=27.02 E-value=50 Score=32.59 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=30.1
Q ss_pred ccCCeEEEEeCCCCCCcHHH-HHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 240 VWSRKFILIFHELSMTGAPL-SMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~-~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
+.++||++.+ +.+++.. ...+|++.|.+.|++|.+|. ++.
T Consensus 5 l~~k~I~lgi---TGs~aa~~k~~~ll~~L~~~g~eV~vv~-T~~ 45 (201)
T 3lqk_A 5 FAGKHVGFGL---TGSHCTYHEVLPQMERLVELGAKVTPFV-THT 45 (201)
T ss_dssp CTTCEEEEEC---CSCGGGGGGTHHHHHHHHHTTCEEEEEC-SSC
T ss_pred cCCCEEEEEE---EChHHHHHHHHHHHHHHhhCCCEEEEEE-Chh
Confidence 3467888773 3345555 78999999999999999997 443
No 182
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV}
Probab=27.02 E-value=54 Score=29.09 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=29.5
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVL 280 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l 280 (732)
++..++++|....+.....+..++..|.+.|+.|.++-+
T Consensus 3 ~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~ 41 (176)
T 2qjw_A 3 SRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDF 41 (176)
T ss_dssp SSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCC
T ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCC
Confidence 566788889887655544567899999999988777653
No 183
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=26.88 E-value=85 Score=31.45 Aligned_cols=76 Identities=18% Similarity=0.094 Sum_probs=41.9
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--CChhHHHhCCcEEEEcCCCch----hh-------
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELARRKIKVLEDRGEPS----FK------- 307 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--~l~~el~~~gI~v~~~~~~~~----~~------- 307 (732)
...|+++|+...+ -.=..+|+.|++.|++|.++.-.... .+..++...+..+.....+.. +.
T Consensus 2 l~~k~~lVTGas~-----GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 76 (264)
T 3tfo_A 2 VMDKVILITGASG-----GIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAV 76 (264)
T ss_dssp CTTCEEEESSTTS-----HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCcc-----HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 3456677754332 23356889999999998877622111 123345555555543333222 11
Q ss_pred -hhcCccEEEeCCch
Q 004760 308 -TSMKADLVIAGSAV 321 (732)
Q Consensus 308 -~~~k~DlVia~Sav 321 (732)
...++|++|.+..+
T Consensus 77 ~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 77 DTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 12489999887543
No 184
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=26.80 E-value=3.1e+02 Score=23.66 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=52.7
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH-------cCCCEEEcCCCCh----hhhhccCceEEEE
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-------FGVPVLGTDAGGT----KEIVEHNVTGLLH 673 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA-------~GlPVI~td~gG~----~EiVe~g~~Gll~ 673 (732)
.+......++..+.+.. .|++++-.. +.+.-|.-+++.+. -.+|+|....... .+..+.|..+++.
T Consensus 40 ~v~~~~~~~~al~~~~~~~~dlvl~D~~-mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~ 118 (143)
T 3m6m_D 40 KVLCVNGAEQVLDAMAEEDYDAVIVDLH-MPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLA 118 (143)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEESC-CSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred eEEEeCCHHHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheee
Confidence 34444434455455543 688887554 34555777777764 1368877543322 3344568899999
Q ss_pred CCCCCcHHHHHHHHHHHhcC
Q 004760 674 PPGHPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 674 ~~~d~~~e~La~aL~~LL~n 693 (732)
.+-+. +.|.+++..+...
T Consensus 119 KP~~~--~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 119 KPVVA--AKLLDTLADLAVS 136 (143)
T ss_dssp SSCCH--HHHHHHHHHHC--
T ss_pred CCCCH--HHHHHHHHHHHHh
Confidence 99887 9999999888653
No 185
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=26.58 E-value=1.2e+02 Score=29.81 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=22.0
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
..|.++|+...+ | .=..+|++|++.|++|.++.
T Consensus 33 ~~k~vlITGasg--g---IG~~la~~L~~~G~~V~~~~ 65 (279)
T 3ctm_A 33 KGKVASVTGSSG--G---IGWAVAEAYAQAGADVAIWY 65 (279)
T ss_dssp TTCEEEETTTTS--S---HHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEECCCc--H---HHHHHHHHHHHCCCEEEEEe
Confidence 446677764332 2 22357888889999988876
No 186
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=26.51 E-value=3.5e+02 Score=24.24 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCCCcEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEE-cCCCChh-
Q 004760 591 VKEILEFLSQHSNLSKAMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGTK- 661 (732)
Q Consensus 591 ~k~il~~l~~~l~l~~~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~-td~gG~~- 661 (732)
..+++..+-+..|.. .|.....-.+..+++.. .|++++=-. +.+--|.-+++.+- ..+|||. |..+...
T Consensus 24 ~r~~l~~~L~~~G~~-~v~~a~~g~~al~~~~~~~~DlillD~~-MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~ 101 (134)
T 3to5_A 24 MRRIVKNLLRDLGFN-NTQEADDGLTALPMLKKGDFDFVVTDWN-MPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQ 101 (134)
T ss_dssp HHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHCCSEEEEESC-CSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcCCc-EEEEECCHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHH
Confidence 333444333444553 34333222333334433 578777554 45556888888874 4688876 4444433
Q ss_pred --hhhccCceEEEECCCCCcHHHHHHHHHHHhc
Q 004760 662 --EIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 662 --EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~ 692 (732)
+..+.|.++++..|-+. +.|.+.+.++++
T Consensus 102 ~~~~~~~Ga~~yl~KP~~~--~~L~~~i~~~l~ 132 (134)
T 3to5_A 102 IIEAAQAGVNGYIVKPFTA--ATLKEKLDKIFE 132 (134)
T ss_dssp HHHHHHTTCCEEEESSCCH--HHHHHHHHHHCC
T ss_pred HHHHHHCCCCEEEECCCCH--HHHHHHHHHHHh
Confidence 33457889999999888 999999988875
No 187
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=26.38 E-value=1.4e+02 Score=29.09 Aligned_cols=71 Identities=14% Similarity=-0.044 Sum_probs=39.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH-HhCCcEEEEcCCCch--hhh--------hcC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEPS--FKT--------SMK 311 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el-~~~gI~v~~~~~~~~--~~~--------~~k 311 (732)
.|.++|+... .-.=..+|++|++.|++|.++. +...-.+++ ...++.++..+.... +.. ..+
T Consensus 5 ~k~vlVTGas-----~giG~~ia~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (245)
T 1uls_A 5 DKAVLITGAA-----HGIGRATLELFAKEGARLVACD--IEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGR 77 (245)
T ss_dssp TCEEEEESTT-----SHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEECCC-----CHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3556676432 2333467889999999998876 222112222 223566555443221 111 236
Q ss_pred ccEEEeCCc
Q 004760 312 ADLVIAGSA 320 (732)
Q Consensus 312 ~DlVia~Sa 320 (732)
+|++|.+..
T Consensus 78 id~lvn~Ag 86 (245)
T 1uls_A 78 LDGVVHYAG 86 (245)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899988754
No 188
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=26.34 E-value=44 Score=32.33 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=27.4
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
.+||++.+. .+.+-....+|++.|.+.|++|.++. ++.
T Consensus 5 ~k~IllgvT---Gs~aa~k~~~ll~~L~~~g~~V~vv~-T~~ 42 (175)
T 3qjg_A 5 GENVLICLC---GSVNSINISHYIIELKSKFDEVNVIA-STN 42 (175)
T ss_dssp CCEEEEEEC---SSGGGGGHHHHHHHHTTTCSEEEEEE-CTG
T ss_pred CCEEEEEEe---CHHHHHHHHHHHHHHHHCCCEEEEEE-CcC
Confidence 477777642 22333458899999999999999998 443
No 189
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=26.19 E-value=1.8e+02 Score=27.27 Aligned_cols=83 Identities=13% Similarity=0.042 Sum_probs=52.0
Q ss_pred cEEEccchhhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEc-CCCC---hhhhhccCceEEEECCCCCc
Q 004760 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGG---TKEIVEHNVTGLLHPPGHPG 679 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~d~~ 679 (732)
.|.......+....+...|++++-.. +.+.-|.-+++.+. ..+|+|.- .... ..+.++.|..|++..+-+.
T Consensus 27 ~v~~~~~~~~al~~~~~~dlvllD~~-lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~- 104 (220)
T 1p2f_A 27 RVKTFLTGEDFLNDEEAFHVVVLDVM-LPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNP- 104 (220)
T ss_dssp EEEEESSHHHHHHCCSCCSEEEEESB-CSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCH-
T ss_pred CEEEECCHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCH-
Confidence 34443333333333356798887554 34445667777664 46888764 3333 2334556889999998887
Q ss_pred HHHHHHHHHHHhc
Q 004760 680 AQVLAQNLRYLLK 692 (732)
Q Consensus 680 ~e~La~aL~~LL~ 692 (732)
+.|..++..++.
T Consensus 105 -~~L~~~i~~~~~ 116 (220)
T 1p2f_A 105 -EILLARVKRFLE 116 (220)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHc
Confidence 899999987754
No 190
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=26.05 E-value=2.2e+02 Score=29.12 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHHHHH--CCCEEEEEEeCCCC-----------CChhHHHhCCcEEEEcCCCch--hhh--hcCccEEEe
Q 004760 255 TGAPLSMMELATELLS--CGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEPS--FKT--SMKADLVIA 317 (732)
Q Consensus 255 gGA~~~~~eLA~~L~~--~G~~V~vv~l~~~g-----------~l~~el~~~gI~v~~~~~~~~--~~~--~~k~DlVia 317 (732)
||+.-.=..|+.+|++ .|++|.++.-.... .-...+...++.++..+.... +.. ..++|+||.
T Consensus 17 GatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~D~vih 96 (362)
T 3sxp_A 17 GGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFH 96 (362)
T ss_dssp TTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHTTSCCSEEEE
T ss_pred CCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhhccCCCEEEE
Confidence 3334445578889999 99999998743320 112233345666666554332 332 458999976
Q ss_pred CCc
Q 004760 318 GSA 320 (732)
Q Consensus 318 ~Sa 320 (732)
..+
T Consensus 97 ~A~ 99 (362)
T 3sxp_A 97 QAA 99 (362)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 191
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=25.93 E-value=74 Score=31.19 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=33.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK 282 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~ 282 (732)
+++.|+..-+..|......+||..|++.|+.|.+|-+..
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 567777777778999999999999999999999998654
No 192
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=25.82 E-value=2.9e+02 Score=22.96 Aligned_cols=83 Identities=10% Similarity=0.198 Sum_probs=52.3
Q ss_pred EEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEc-CCCC---hhhhhccCceEEEECCCCC
Q 004760 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGG---TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~d~ 678 (732)
+.......+....+.. .|++++-.. +...-|.-+++.+. ..+|+|.. .... ..+.++.|..+++..|-+.
T Consensus 30 v~~~~~~~~~~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~ 108 (126)
T 1dbw_A 30 VKMHQSAEAFLAFAPDVRNGVLVTDLR-MPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFED 108 (126)
T ss_dssp EEEESCHHHHHHHGGGCCSEEEEEECC-STTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCH
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEECC-CCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCH
Confidence 4444433454455543 577776544 23445666777664 36788764 4333 2344567889999998887
Q ss_pred cHHHHHHHHHHHhcC
Q 004760 679 GAQVLAQNLRYLLKN 693 (732)
Q Consensus 679 ~~e~La~aL~~LL~n 693 (732)
+.|..++..++..
T Consensus 109 --~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 109 --TVIIEAIERASEH 121 (126)
T ss_dssp --HHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHh
Confidence 8999999887653
No 193
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=25.81 E-value=1.7e+02 Score=24.22 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCC-CEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--hhh-hcCccEEEeCC
Q 004760 261 MMELATELLSCG-ATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--FKT-SMKADLVIAGS 319 (732)
Q Consensus 261 ~~eLA~~L~~~G-~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--~~~-~~k~DlVia~S 319 (732)
-..++..|.+.| ++|.++. +...-.+.+...++.++....... +.. -..+|+|+...
T Consensus 17 G~~~~~~l~~~g~~~v~~~~--r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 17 GQMIAALLKTSSNYSVTVAD--HDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp HHHHHHHHHHCSSEEEEEEE--SCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHHhCCCceEEEEe--CCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 345677888899 8877765 333333445567777766554332 222 23789997765
No 194
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=25.73 E-value=3.6e+02 Score=24.09 Aligned_cols=71 Identities=21% Similarity=0.093 Sum_probs=41.5
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH-hCCcEEEEcCCC-ch-hhh--hcCccEEE
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGE-PS-FKT--SMKADLVI 316 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~-~~gI~v~~~~~~-~~-~~~--~~k~DlVi 316 (732)
+.+|+++ |+...-..+|..|.+.|++|.++. ......+.+. ..|+.++..... .. +.. -..+|+|+
T Consensus 19 ~~~v~Ii-------G~G~iG~~la~~L~~~g~~V~vid--~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 19 SKYIVIF-------GCGRLGSLIANLASSSGHSVVVVD--KNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp CCEEEEE-------CCSHHHHHHHHHHHHTTCEEEEEE--SCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred CCcEEEE-------CCCHHHHHHHHHHHhCCCeEEEEE--CCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 4566665 233444567888889999988886 2222233444 567776654332 22 222 23689998
Q ss_pred eCCch
Q 004760 317 AGSAV 321 (732)
Q Consensus 317 a~Sav 321 (732)
..+..
T Consensus 90 ~~~~~ 94 (155)
T 2g1u_A 90 AFTND 94 (155)
T ss_dssp ECSSC
T ss_pred EEeCC
Confidence 76543
No 195
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=25.60 E-value=94 Score=31.17 Aligned_cols=73 Identities=19% Similarity=0.071 Sum_probs=38.7
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCC--cEEEEcCCCch--h---hhh-cCccE
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRK--IKVLEDRGEPS--F---KTS-MKADL 314 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~g--I~v~~~~~~~~--~---~~~-~k~Dl 314 (732)
.|+++|+... .-.=..+|++|++.|++|.++.-. ...+....+..+ +.++..+.... + ... .++|+
T Consensus 16 gk~vlVTGas-----~gIG~~~a~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~ 89 (291)
T 3rd5_A 16 QRTVVITGAN-----SGLGAVTARELARRGATVIMAVRD-TRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADV 89 (291)
T ss_dssp TCEEEEECCS-----SHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred CCEEEEeCCC-----ChHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 3556665332 233357889999999998887621 111222222222 34444333221 2 222 37899
Q ss_pred EEeCCch
Q 004760 315 VIAGSAV 321 (732)
Q Consensus 315 Via~Sav 321 (732)
+|.+..+
T Consensus 90 lv~nAg~ 96 (291)
T 3rd5_A 90 LINNAGI 96 (291)
T ss_dssp EEECCCC
T ss_pred EEECCcC
Confidence 9888654
No 196
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=25.53 E-value=2.1e+02 Score=26.09 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=53.8
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc---CCCEEE-cCCCC---hhhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF---GVPVLG-TDAGG---TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~---GlPVI~-td~gG---~~EiVe~g~~Gll~~~~d 677 (732)
.|.......+....+.. .|++++-.. +.+.-|.-+++.+-. .+|||. |.... ..+.++.|..+++..|-+
T Consensus 33 ~v~~~~~~~~al~~~~~~~~dlvl~D~~-lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 111 (184)
T 3rqi_A 33 AVRQAHNKDEALKLAGAEKFEFITVXLH-LGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPAN 111 (184)
T ss_dssp EEEEECSHHHHHHHHTTSCCSEEEECSE-ETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCC
T ss_pred EEEEeCCHHHHHHHHhhCCCCEEEEecc-CCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCC
Confidence 35444444454455543 578877544 344567777777643 678876 44333 334456788999999988
Q ss_pred CcHHHHHHHHHHHhcC
Q 004760 678 PGAQVLAQNLRYLLKN 693 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n 693 (732)
. +.|..+|..++..
T Consensus 112 ~--~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 112 V--ESILAALQTNASE 125 (184)
T ss_dssp H--HHHHHHTSTTHHH
T ss_pred H--HHHHHHHHHHHHH
Confidence 7 8999988877653
No 197
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=25.38 E-value=67 Score=31.73 Aligned_cols=45 Identities=22% Similarity=0.150 Sum_probs=38.0
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM 287 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~ 287 (732)
+.+++.|+..-+..|......+||..|+ +|+.|.+|-+...+++.
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~ 70 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASIT 70 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHH
Confidence 4578888888888899999999999999 99999999877666443
No 198
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=25.36 E-value=73 Score=33.63 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=38.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
|++.|+..-+..|-.....+||..|++.|+.|.+|-+...+++...+
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l 48 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLM 48 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhh
Confidence 56777766677788889999999999999999999987777665444
No 199
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=25.26 E-value=1.6e+02 Score=28.09 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCC--CEEEEEEeCCCCCChhHHHhC---CcEEEEcCCCch--hh---h----hc---CccEEEeCCch
Q 004760 260 SMMELATELLSCG--ATVSAVVLSKRGGLMPELARR---KIKVLEDRGEPS--FK---T----SM---KADLVIAGSAV 321 (732)
Q Consensus 260 ~~~eLA~~L~~~G--~~V~vv~l~~~g~l~~el~~~---gI~v~~~~~~~~--~~---~----~~---k~DlVia~Sav 321 (732)
.=..+|+.|++.| ++|.++.- ...-.+++... ++.++..+.... +. . .+ ++|+||.+..+
T Consensus 15 iG~~la~~l~~~g~~~~V~~~~r--~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~id~li~~Ag~ 91 (250)
T 1yo6_A 15 IGLGLVQQLVKDKNIRHIIATAR--DVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGV 91 (250)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEES--SGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEec--CHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCCCcEEEECCcc
Confidence 3457888999999 99888762 22222344332 445554443221 11 1 11 79999877543
No 200
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=25.24 E-value=1.2e+02 Score=33.10 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=37.6
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC--C-CC--------hhHHHhCCcEEEEc
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--G-GL--------MPELARRKIKVLED 300 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~--g-~l--------~~el~~~gI~v~~~ 300 (732)
.+++|++| |+...-+++|..|.+.|.+|+++..... . .+ .+.+++.||+++..
T Consensus 193 ~~~~vvVI-------GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~ 256 (490)
T 2bc0_A 193 DIKRVAVV-------GAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFG 256 (490)
T ss_dssp TCCEEEEE-------CCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEET
T ss_pred CCceEEEE-------CCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeC
Confidence 57888887 4556788999999999999999974321 1 11 23456788887654
No 201
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=24.98 E-value=1.1e+02 Score=30.43 Aligned_cols=76 Identities=18% Similarity=0.083 Sum_probs=43.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhC--CcEEEEcCCCch--h---hh-----hc
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR--KIKVLEDRGEPS--F---KT-----SM 310 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~--gI~v~~~~~~~~--~---~~-----~~ 310 (732)
.|+++|+...+.+|.. ..+|++|++.|++|.++.........+++... .+.++..+.... + .. ..
T Consensus 26 ~k~vlVTGasg~~GIG---~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 102 (280)
T 3nrc_A 26 GKKILITGLLSNKSIA---YGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD 102 (280)
T ss_dssp TCEEEECCCCSTTCHH---HHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCCHH---HHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4677777655444444 45788999999998887633211122333222 355554443322 1 11 24
Q ss_pred CccEEEeCCch
Q 004760 311 KADLVIAGSAV 321 (732)
Q Consensus 311 k~DlVia~Sav 321 (732)
++|++|.+..+
T Consensus 103 ~id~li~nAg~ 113 (280)
T 3nrc_A 103 GLDAIVHSIAF 113 (280)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 78999888654
No 202
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=24.95 E-value=80 Score=30.41 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=36.3
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKR 283 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~-G~~V~vv~l~~~ 283 (732)
+-|++.|+..-+..|......+||..|++. |+.|.+|-+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 357788888888889999999999999998 999999987655
No 203
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=24.81 E-value=1.3e+02 Score=30.47 Aligned_cols=44 Identities=20% Similarity=0.099 Sum_probs=37.6
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
+.+++.|+...+..|-.....+||..|++.|..|.+|-+.-..+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~ 124 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKP 124 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Confidence 46788898888888999999999999999999999998654433
No 204
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=24.75 E-value=2.1e+02 Score=31.20 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=50.9
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCCCCCh-hH----HHhCCcEEEEcCCC--ch------hhh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGGLM-PE----LARRKIKVLEDRGE--PS------FKT 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~-G~~V~vv~l~~~g~l~-~e----l~~~gI~v~~~~~~--~~------~~~ 308 (732)
.+++.++ ..+..|-...+..||..|... |+.|.++.+....+.. .. -...++.++..... +. +..
T Consensus 100 ~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 100 PAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 4566665 357778888999999999999 9999999865443322 21 23567887765421 11 121
Q ss_pred --hcCccEEEeCCc
Q 004760 309 --SMKADLVIAGSA 320 (732)
Q Consensus 309 --~~k~DlVia~Sa 320 (732)
...+|+||..++
T Consensus 179 ~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 179 AKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEECC
Confidence 257899988764
No 205
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.75 E-value=1e+02 Score=31.95 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=37.1
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
++++|+..-+..|-.....+||..|++.|+.|.+|.+...+.+...+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l 60 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSL 60 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHh
Confidence 55666666777889999999999999999999999976655444444
No 206
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=24.72 E-value=1.6e+02 Score=30.74 Aligned_cols=74 Identities=11% Similarity=-0.023 Sum_probs=42.8
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC---------ChhHHHhCCcEEEEcCCCch----h---
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---------LMPELARRKIKVLEDRGEPS----F--- 306 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~---------l~~el~~~gI~v~~~~~~~~----~--- 306 (732)
.|+++|+...+ -.=..+|+.|++.|++|.++.-..... ...++...+.++.....+.. +
T Consensus 45 gk~vlVTGas~-----GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 119 (346)
T 3kvo_A 45 GCTVFITGASR-----GIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA 119 (346)
T ss_dssp TCEEEEETTTS-----HHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCh-----HHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 45666754332 233578899999999988887333221 13445555655544333322 1
Q ss_pred hh-----hcCccEEEeCCch
Q 004760 307 KT-----SMKADLVIAGSAV 321 (732)
Q Consensus 307 ~~-----~~k~DlVia~Sav 321 (732)
.. ..++|++|.|..+
T Consensus 120 ~~~~~~~~g~iDilVnnAG~ 139 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASA 139 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 11 2389999888653
No 207
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=24.70 E-value=1.4e+02 Score=32.89 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=44.9
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCchh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav~ 322 (732)
++|.+| ++||...+ -+|+.|.+.|++|++.-. ........|+..|+++..-.....+ ..+|+|+...++.
T Consensus 20 ~~v~vi----GiG~sG~s--~~A~~l~~~G~~V~~~D~-~~~~~~~~l~~~gi~~~~g~~~~~~---~~a~~vv~s~~i~ 89 (491)
T 2f00_A 20 RHIHFV----GIGGAGMG--GIAEVLANEGYQISGSDL-APNPVTQQLMNLGATIYFNHRPENV---RDASVVVVSSAIS 89 (491)
T ss_dssp CEEEEE----TTTSTTHH--HHHHHHHHTTCEEEEECS-SCCHHHHHHHHTTCEEESSCCGGGG---TTCSEEEECTTCC
T ss_pred CEEEEE----EcCHHHHH--HHHHHHHhCCCeEEEECC-CCCHHHHHHHHCCCEEECCCCHHHc---CCCCEEEECCCCC
Confidence 566544 66665544 267778889999987653 2233456788899998643322222 3689998887653
No 208
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=24.25 E-value=1.4e+02 Score=29.93 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=42.0
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC------CC---hhHHHhCCcEEEEcCCCch-------
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG------GL---MPELARRKIKVLEDRGEPS------- 305 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g------~l---~~el~~~gI~v~~~~~~~~------- 305 (732)
..|+++|+...+ | .=..+|++|++.|++|.++.-.... .+ .+++...+.++.....+..
T Consensus 8 ~~k~vlVTGas~--G---IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 82 (285)
T 3sc4_A 8 RGKTMFISGGSR--G---IGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAA 82 (285)
T ss_dssp TTCEEEEESCSS--H---HHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHH
T ss_pred CCCEEEEECCCC--H---HHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence 346677764332 2 3356889999999998887733221 11 2334444545443333222
Q ss_pred hhh-----hcCccEEEeCCch
Q 004760 306 FKT-----SMKADLVIAGSAV 321 (732)
Q Consensus 306 ~~~-----~~k~DlVia~Sav 321 (732)
+.. ..++|++|.+..+
T Consensus 83 ~~~~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 83 AVAKTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 111 2389999887643
No 209
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=24.12 E-value=1.4e+02 Score=28.77 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=37.3
Q ss_pred cccc---ccchhhhhccCCeEEEEeCCCCCCc-HHH-H---HHHHHHHHHHCCC-EEEEEEe
Q 004760 228 GTCD---RKGDFARFVWSRKFILIFHELSMTG-APL-S---MMELATELLSCGA-TVSAVVL 280 (732)
Q Consensus 228 ~~~~---~~~~~~~~~~~~kIllI~h~ls~gG-A~~-~---~~eLA~~L~~~G~-~V~vv~l 280 (732)
+.|. ..=++..+..+++++|+++-...++ ... . +.+++.++.+.|. +|..|+.
T Consensus 30 ~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~ 91 (176)
T 4f82_A 30 EGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSV 91 (176)
T ss_dssp TTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred ccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 4565 3445677767888888888777765 455 3 4566778888999 7888774
No 210
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=24.10 E-value=1.6e+02 Score=28.09 Aligned_cols=70 Identities=19% Similarity=0.066 Sum_probs=37.8
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh--CCcEEEEcCCCch--hhh---h-cCccEE
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPS--FKT---S-MKADLV 315 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~--~gI~v~~~~~~~~--~~~---~-~k~DlV 315 (732)
|.++|+... .-.=..+|++|++.|++|.++. +...-.+++.. .++.++..+.... +.. . .++|+|
T Consensus 8 ~~vlVTGas-----ggiG~~~a~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 1cyd_A 8 LRALVTGAG-----KGIGRDTVKALHASGAKVVAVT--RTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLL 80 (244)
T ss_dssp CEEEEESTT-----SHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CEEEEeCCC-----chHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence 445565332 2333468889999999988776 22211122221 3666664443221 222 2 258999
Q ss_pred EeCCc
Q 004760 316 IAGSA 320 (732)
Q Consensus 316 ia~Sa 320 (732)
|.+..
T Consensus 81 i~~Ag 85 (244)
T 1cyd_A 81 VNNAA 85 (244)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 87754
No 211
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=24.05 E-value=3.1e+02 Score=22.72 Aligned_cols=83 Identities=7% Similarity=0.065 Sum_probs=52.3
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH-----cCCCEEEcCC-CCh---hhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLGTDA-GGT---KEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA-----~GlPVI~td~-gG~---~EiVe~g~~Gll~~~ 675 (732)
.|.......+...++.. .|++++-.. +.+.-|.-+++.+. ..+|+|.... +.. .+.++.|..+++..|
T Consensus 33 ~v~~~~~~~~a~~~~~~~~~dlvl~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP 111 (129)
T 1p6q_A 33 QITAAGDGEQGMKIMAQNPHHLVISDFN-MPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKP 111 (129)
T ss_dssp CEECCSSHHHHHHHHHTSCCSEEEECSS-SCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCC
T ss_pred EEEecCCHHHHHHHHHcCCCCEEEEeCC-CCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 34444444454455543 588887554 34445677777774 3567776433 332 234556788999988
Q ss_pred CCCcHHHHHHHHHHHhc
Q 004760 676 GHPGAQVLAQNLRYLLK 692 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~ 692 (732)
-+. +.|..++..++.
T Consensus 112 ~~~--~~l~~~i~~~~~ 126 (129)
T 1p6q_A 112 FTI--EKMKAAIEAVFG 126 (129)
T ss_dssp SSH--HHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHH
Confidence 877 899998887754
No 212
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=23.98 E-value=1.3e+02 Score=29.74 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=43.0
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeCCCCCC-hhHHHhCCcEEEEcCCCc---------h--
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGGL-MPELARRKIKVLEDRGEP---------S-- 305 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~--G~~V~vv~l~~~g~l-~~el~~~gI~v~~~~~~~---------~-- 305 (732)
|.++||.++ .|.+| ..+..|...+.+. .++|.+|...+.... .+..++.||+++...... .
T Consensus 5 m~~~ri~vl---~SG~g--snl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~ 79 (209)
T 4ds3_A 5 MKRNRVVIF---ISGGG--SNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAIL 79 (209)
T ss_dssp -CCEEEEEE---ESSCC--HHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHH
T ss_pred CCCccEEEE---EECCc--HHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHH
Confidence 555677665 23333 3455566666543 368887775543332 345568999998754211 1
Q ss_pred -hhhhcCccEEEeC
Q 004760 306 -FKTSMKADLVIAG 318 (732)
Q Consensus 306 -~~~~~k~DlVia~ 318 (732)
..++.+||++++-
T Consensus 80 ~~l~~~~~Dliv~a 93 (209)
T 4ds3_A 80 AALDVLKPDIICLA 93 (209)
T ss_dssp HHHHHHCCSEEEES
T ss_pred HHHHhcCCCEEEEe
Confidence 3347899999553
No 213
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=23.85 E-value=1.8e+02 Score=28.98 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=40.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC---hhHHHhCCcEE--EEcCCCch-----h----hh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRKIKV--LEDRGEPS-----F----KT 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l---~~el~~~gI~v--~~~~~~~~-----~----~~ 308 (732)
-|+++|+.. +.-.=..+|+.|++.|++|.++.. ....+ ..++...+..+ +..+.... + ..
T Consensus 33 gk~~lVTGa-----s~GIG~aia~~la~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 33 GRTALVTGS-----SRGIGAAIAEGLAGAGAHVILHGV-KPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEA 106 (275)
T ss_dssp TCEEEETTC-----SSHHHHHHHHHHHHTTCEEEEEES-STTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCEEEEECC-----CCHHHHHHHHHHHHCCCEEEEEcC-CHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 466777532 233345788999999999888763 22222 23344444443 33332211 1 11
Q ss_pred hcCccEEEeCCch
Q 004760 309 SMKADLVIAGSAV 321 (732)
Q Consensus 309 ~~k~DlVia~Sav 321 (732)
..++|++|.|..+
T Consensus 107 ~g~iD~lvnnAg~ 119 (275)
T 4imr_A 107 IAPVDILVINASA 119 (275)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCCEEEECCCC
Confidence 2489999887643
No 214
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=23.82 E-value=1.2e+02 Score=29.57 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=41.7
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--CChhHHHhCCcEEEEcCCCch----hh---h----
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELARRKIKVLEDRGEPS----FK---T---- 308 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--~l~~el~~~gI~v~~~~~~~~----~~---~---- 308 (732)
..|+++|+.. +.-.=..+|++|++.|++|.++.-.... .+..++...+.++.....+.. +. .
T Consensus 8 ~~k~vlITGa-----s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 8 ENKVGIVTGS-----GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp TTCEEEEETT-----TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-----CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3466777543 2333457899999999998877622111 123344444544443333222 11 1
Q ss_pred -hcCccEEEeCCch
Q 004760 309 -SMKADLVIAGSAV 321 (732)
Q Consensus 309 -~~k~DlVia~Sav 321 (732)
..++|++|.+..+
T Consensus 83 ~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 83 EFGGIDYLVNNAAI 96 (253)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCc
Confidence 2389999888655
No 215
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=23.72 E-value=1.6e+02 Score=29.30 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVL 280 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l 280 (732)
..|+++|+...+ | .=..+|+.|++.|++|.++.-
T Consensus 5 ~~k~~lVTGas~--G---IG~aia~~la~~G~~V~~~~r 38 (274)
T 3e03_A 5 SGKTLFITGASR--G---IGLAIALRAARDGANVAIAAK 38 (274)
T ss_dssp TTCEEEEETTTS--H---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEECCCC--h---HHHHHHHHHHHCCCEEEEEec
Confidence 346677764432 2 334678999999999888763
No 216
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=23.62 E-value=75 Score=30.79 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=33.1
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVL 280 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l 280 (732)
|.|+|++|..++.-+.-...+.+.+..+...|++|.++-+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl 40 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHI 40 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEec
Confidence 4579999999999888888888888888888988888764
No 217
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=23.61 E-value=61 Score=32.02 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=34.6
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
.+++.|+..-+..|......+||..|++.|+.|.+|-+...+.
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 48 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN 48 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC
Confidence 4677777666666888889999999999999999998665543
No 218
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.53 E-value=3.3e+02 Score=22.87 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=55.4
Q ss_pred cEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHHc---CCCEEEcCCCC----hhhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAF---GVPVLGTDAGG----TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA~---GlPVI~td~gG----~~EiVe~g~~Gll~~~~d 677 (732)
.|......++....+. ..|++++-.. +.+.-|..+++.+.. .+|+|...... ..+.+..|..+++..+-+
T Consensus 33 ~v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~ 111 (137)
T 3hdg_A 33 EVWSAGDGEEGERLFGLHAPDVIITDIR-MPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIE 111 (137)
T ss_dssp CEEEESSHHHHHHHHHHHCCSEEEECSS-CSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCC
T ss_pred EEEEECCHHHHHHHHhccCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCC
Confidence 4555544444444443 3688887665 355567777776653 67887754332 234456788899999888
Q ss_pred CcHHHHHHHHHHHhcC
Q 004760 678 PGAQVLAQNLRYLLKN 693 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n 693 (732)
. +.|.+++.++++.
T Consensus 112 ~--~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 112 P--GRLMETLEDFRHI 125 (137)
T ss_dssp H--HHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHH
Confidence 7 9999999998764
No 219
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=23.46 E-value=1.5e+02 Score=29.34 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=41.7
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC---hhHHHhC--CcEEEEcCCCch--hh---h-
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARR--KIKVLEDRGEPS--FK---T- 308 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l---~~el~~~--gI~v~~~~~~~~--~~---~- 308 (732)
|...|+++|+.. +.-.=..+|++|++.|++|.++.......+ ..++... .+.++..+.... +. .
T Consensus 22 ~~~~k~vlITGa-----s~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (269)
T 3gk3_A 22 MQAKRVAFVTGG-----MGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEK 96 (269)
T ss_dssp --CCCEEEETTT-----TSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred hhcCCEEEEECC-----CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 445677777532 233345788999999999887762222111 1222222 355554443322 11 1
Q ss_pred ----hcCccEEEeCCch
Q 004760 309 ----SMKADLVIAGSAV 321 (732)
Q Consensus 309 ----~~k~DlVia~Sav 321 (732)
..++|++|.+..+
T Consensus 97 ~~~~~g~id~li~nAg~ 113 (269)
T 3gk3_A 97 VLADFGKVDVLINNAGI 113 (269)
T ss_dssp HHHHHSCCSEEEECCCC
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2389999888654
No 220
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.43 E-value=3.2e+02 Score=22.71 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=49.6
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc---CCCEEEc-CCCCh---hhhhccCceEEEECCC-
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF---GVPVLGT-DAGGT---KEIVEHNVTGLLHPPG- 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~---GlPVI~t-d~gG~---~EiVe~g~~Gll~~~~- 676 (732)
.+.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|+|.- ..... .+.++.|..+++..|-
T Consensus 33 ~v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~ 111 (130)
T 3eod_A 33 TTVLAADGVDALELLGGFTPDLMICDIA-MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 (130)
T ss_dssp EEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC-
T ss_pred eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 34444444455555543 578887654 345567777777653 5677664 33332 3455678899999887
Q ss_pred CCcHHHHHHHHHHHhcC
Q 004760 677 HPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n 693 (732)
+. +.|.+.+..++..
T Consensus 112 ~~--~~l~~~i~~~l~~ 126 (130)
T 3eod_A 112 DL--NRLREMVFACLYP 126 (130)
T ss_dssp ----CHHHHHHHHHHC-
T ss_pred cH--HHHHHHHHHHhch
Confidence 66 8899999988764
No 221
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.38 E-value=3.5e+02 Score=23.06 Aligned_cols=83 Identities=11% Similarity=0.239 Sum_probs=51.6
Q ss_pred cEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEc-CCCC---hhhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGG---TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~d 677 (732)
.|.......+....+. ..|++++-.. +.+.-|.-+++.+. ..+|+|.- .... ..+.++.|..+++..+-+
T Consensus 30 ~v~~~~~~~~a~~~l~~~~~dlvllD~~-l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~ 108 (137)
T 3cfy_A 30 DIFHVETGRDAIQFIERSKPQLIILDLK-LPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPIN 108 (137)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEECSB-CSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCC
T ss_pred eEEEeCCHHHHHHHHHhcCCCEEEEecC-CCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCC
Confidence 3444333344444443 3688887654 24445666777664 35677654 3333 234456788899999888
Q ss_pred CcHHHHHHHHHHHhc
Q 004760 678 PGAQVLAQNLRYLLK 692 (732)
Q Consensus 678 ~~~e~La~aL~~LL~ 692 (732)
. +.|...+..++.
T Consensus 109 ~--~~L~~~i~~~~~ 121 (137)
T 3cfy_A 109 A--DRLKTSVALHLK 121 (137)
T ss_dssp H--HHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHH
Confidence 7 899999988764
No 222
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=23.33 E-value=1e+02 Score=29.96 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=40.0
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--CChhHHHhCC--cEEEEcCCCch--hhh--------
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELARRK--IKVLEDRGEPS--FKT-------- 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--~l~~el~~~g--I~v~~~~~~~~--~~~-------- 308 (732)
.|.++|+. |+.-.=..+|++|++.|++|.++.-.... .+.+++...+ +.++..+.... +..
T Consensus 13 ~k~vlItG-----asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 13 NRVAIVTG-----GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp TCEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-----CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 45566653 33334457889999999998887622110 1123333333 44444433221 211
Q ss_pred hcCccEEEeCCch
Q 004760 309 SMKADLVIAGSAV 321 (732)
Q Consensus 309 ~~k~DlVia~Sav 321 (732)
..++|+||.+..+
T Consensus 88 ~~~id~vi~~Ag~ 100 (260)
T 3awd_A 88 EGRVDILVACAGI 100 (260)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2379999877543
No 223
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.29 E-value=1.1e+02 Score=28.22 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=44.1
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCCCCChhHHHhCCcEEEEcCCC-ch-hhh---hcCccEE
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGGLMPELARRKIKVLEDRGE-PS-FKT---SMKADLV 315 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~-G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~-~~-~~~---~~k~DlV 315 (732)
+.+|+++ |+...-..+|+.|.+. |++|.++. ......+.+...|+.++..... .. +.. -.++|+|
T Consensus 39 ~~~v~Ii-------G~G~~G~~~a~~L~~~~g~~V~vid--~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLIL-------GMGRIGTGAYDELRARYGKISLGIE--IREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEE-------CCSHHHHHHHHHHHHHHCSCEEEEE--SCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEE-------CCCHHHHHHHHHHHhccCCeEEEEE--CCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 4567766 3345556678888888 99998886 3333345566778887754432 22 322 2378999
Q ss_pred EeCCc
Q 004760 316 IAGSA 320 (732)
Q Consensus 316 ia~Sa 320 (732)
++.+.
T Consensus 110 i~~~~ 114 (183)
T 3c85_A 110 LLAMP 114 (183)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 87543
No 224
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=23.21 E-value=47 Score=32.68 Aligned_cols=44 Identities=30% Similarity=0.276 Sum_probs=30.6
Q ss_pred hhhHHHHHHHcCEEEEccCCCCCCCc--HHHHHHHHcCCCEEEcCCCChh
Q 004760 614 TTRVASLYSAADVYVINSQGLGETFG--RVTIEAMAFGVPVLGTDAGGTK 661 (732)
Q Consensus 614 ~~dv~~lysaADv~V~pS~~~~Egfg--~vilEAMA~GlPVI~td~gG~~ 661 (732)
.+.-.-+...||.+|.-.- ++| ..+.||+..++||++-+..|..
T Consensus 109 ~~Rk~~m~~~sda~IvlpG----G~GTL~E~~eal~~~kPV~lln~~g~w 154 (195)
T 1rcu_A 109 QMRSFVLLRNADVVVSIGG----EIGTAIEILGAYALGKPVILLRGTGGW 154 (195)
T ss_dssp HHHHHHHHTTCSEEEEESC----CHHHHHHHHHHHHTTCCEEEETTSCHH
T ss_pred HHHHHHHHHhCCEEEEecC----CCcHHHHHHHHHhcCCCEEEECCCCcc
Confidence 3556677788998765432 244 3467888999999999875544
No 225
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=23.20 E-value=4.6e+02 Score=24.42 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=52.9
Q ss_pred cEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEcCC-C---ChhhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMA---FGVPVLGTDA-G---GTKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~td~-g---G~~EiVe~g~~Gll~~~~d 677 (732)
.|.......+....+. ..|++++-.. +.+.-|.-+++.+. ..+|||.-.. . ...+.++.|..+++..+-+
T Consensus 33 ~v~~~~~~~~a~~~~~~~~~dlvllD~~-l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~ 111 (233)
T 1ys7_A 33 EVATAVDGAEALRSATENRPDAIVLDIN-MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFV 111 (233)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEESS-CSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCC
T ss_pred EEEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 3444433344444444 3588877654 34445777777774 4788876432 2 2344556788999999888
Q ss_pred CcHHHHHHHHHHHhc
Q 004760 678 PGAQVLAQNLRYLLK 692 (732)
Q Consensus 678 ~~~e~La~aL~~LL~ 692 (732)
. +.|..++..++.
T Consensus 112 ~--~~L~~~i~~~~~ 124 (233)
T 1ys7_A 112 L--AELVARVKALLR 124 (233)
T ss_dssp H--HHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHh
Confidence 7 899998887754
No 226
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=23.14 E-value=3.3e+02 Score=22.69 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=54.2
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEcCC-C--ChhhhhccCceEEEECCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGTDA-G--GTKEIVEHNVTGLLHPPG 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~td~-g--G~~EiVe~g~~Gll~~~~ 676 (732)
.|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|+|.... . ...+.+..+..+++..+-
T Consensus 29 ~v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~ 107 (133)
T 3nhm_A 29 DCTTAADGASGLQQALAHPPDVLISDVN-MDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPV 107 (133)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEECSS-CSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSC
T ss_pred EEEEECCHHHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccC
Confidence 35544444454445443 578887654 355567777777754 678876432 2 123455667888999988
Q ss_pred CCcHHHHHHHHHHHhcCH
Q 004760 677 HPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~ 694 (732)
+. +.|..+|..+++..
T Consensus 108 ~~--~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 108 KP--PVLIAQLHALLARA 123 (133)
T ss_dssp CH--HHHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHhhh
Confidence 87 99999999987643
No 227
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=22.97 E-value=1.7e+02 Score=31.42 Aligned_cols=37 Identities=5% Similarity=0.042 Sum_probs=27.3
Q ss_pred hccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Q 004760 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK 282 (732)
Q Consensus 239 ~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~ 282 (732)
.|+.+|||++ |+.+ ....+++.+.+.|++|.++....
T Consensus 3 ~m~~~kiLI~------g~g~-~a~~i~~aa~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 3 AMEIKSILIA------NRGE-IALRALRTIKEMGKKAICVYSEA 39 (446)
T ss_dssp TTCCCEEEEC------CCHH-HHHHHHHHHHHTTCEEEEEEEGG
T ss_pred ccccceEEEE------CCCH-HHHHHHHHHHHcCCEEEEEEcCc
Confidence 3666787775 3344 56789999999999999987443
No 228
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=22.94 E-value=63 Score=30.48 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=27.7
Q ss_pred CeEEEEeCCCCCCc-HHHHHHHHHHHHHH-CCCEEEEEEeCC
Q 004760 243 RKFILIFHELSMTG-APLSMMELATELLS-CGATVSAVVLSK 282 (732)
Q Consensus 243 ~kIllI~h~ls~gG-A~~~~~eLA~~L~~-~G~~V~vv~l~~ 282 (732)
.||++|..+ .+| ....+-.++..|.+ .|++|.++.+..
T Consensus 5 ~kiliiy~S--~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~ 44 (188)
T 2ark_A 5 GKVLVIYDT--RTGNTKKMAELVAEGARSLEGTEVRLKHVDE 44 (188)
T ss_dssp EEEEEEECC--SSSHHHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred CEEEEEEEC--CCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh
Confidence 478888776 556 45556667888887 899999887543
No 229
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=22.94 E-value=3.5e+02 Score=22.92 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=46.2
Q ss_pred cCEEEEccCCCCCCCcHHHHHHHHc----CCCEEE-cCCCCh---hhhhccCceEEEECCCCCcHHHHHHHHHHHhcC
Q 004760 624 ADVYVINSQGLGETFGRVTIEAMAF----GVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 624 ADv~V~pS~~~~Egfg~vilEAMA~----GlPVI~-td~gG~---~EiVe~g~~Gll~~~~d~~~e~La~aL~~LL~n 693 (732)
.|++++--. +.+.-|.-+++.+.. .+|||. |..... .+.++.|..+++..|-+. +.|.+.+..++..
T Consensus 53 ~dlvllD~~-mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~--~~L~~~l~~~~~~ 127 (133)
T 2r25_B 53 YNMIFMDVQ-MPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKR--PKLKTILTEFCAA 127 (133)
T ss_dssp CSEEEECSC-CSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCH--HHHHHHHHHHCTT
T ss_pred CCEEEEeCC-CCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHHHh
Confidence 588887654 344456777777742 468765 444443 344567889999999887 9999999888653
No 230
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=22.73 E-value=94 Score=31.57 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=40.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC--CChhHHHhCCcEE--EEcCCCch--hh---h-----
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELARRKIKV--LEDRGEPS--FK---T----- 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g--~l~~el~~~gI~v--~~~~~~~~--~~---~----- 308 (732)
.|.++|+. |+.-.=..+|++|++.|++|.++.-.... .+..++...+.++ +..+.... +. .
T Consensus 31 gk~vlVTG-----as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 31 GRAAVVTG-----GASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp TCEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-----CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 45666653 33334457889999999998877622111 1223444444443 33332221 11 1
Q ss_pred hcCccEEEeCCch
Q 004760 309 SMKADLVIAGSAV 321 (732)
Q Consensus 309 ~~k~DlVia~Sav 321 (732)
..++|++|.+..+
T Consensus 106 ~g~id~lvnnAg~ 118 (301)
T 3tjr_A 106 LGGVDVVFSNAGI 118 (301)
T ss_dssp HSSCSEEEECCCC
T ss_pred CCCCCEEEECCCc
Confidence 2389999888654
No 231
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=22.67 E-value=1.7e+02 Score=30.49 Aligned_cols=45 Identities=16% Similarity=-0.063 Sum_probs=32.6
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCCcHHHHHHHHcCCCEEEcCCCChh
Q 004760 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661 (732)
Q Consensus 615 ~dv~~lysaADv~V~pS~~~~Egfg~vilEAMA~GlPVI~td~gG~~ 661 (732)
+++.+++..+|+.|--+. .+..--.+..|+..|+|+|..-.|-..
T Consensus 80 ~dl~~ll~~aDVvIDFT~--p~a~~~~~~~~l~~Gv~vViGTTG~~~ 124 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQ--PQASVLYANYAAQKSLIHIIGTTGFSK 124 (288)
T ss_dssp SCHHHHTTSCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 578888889999986664 444434456688999999997666433
No 232
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=22.65 E-value=3.4e+02 Score=26.58 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHC--CCEEEEEEeCCCCC-ChhHHHhCCcEEEEcCCC---------ch---hhhhcCccEEEeC
Q 004760 260 SMMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGE---------PS---FKTSMKADLVIAG 318 (732)
Q Consensus 260 ~~~eLA~~L~~~--G~~V~vv~l~~~g~-l~~el~~~gI~v~~~~~~---------~~---~~~~~k~DlVia~ 318 (732)
.+..|...+.+. +++|.+|+..+... ..+..++.||+++..... .. ..+..+||++++-
T Consensus 13 nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a 86 (212)
T 1jkx_A 13 NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLA 86 (212)
T ss_dssp HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEES
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEe
Confidence 355566666554 58888777554433 334557899999875421 11 3347899999554
No 233
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=22.56 E-value=2.5e+02 Score=28.07 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=42.3
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCh---hHHHhCCcEEEEcCCCc--hhhh-hcCccEEE
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM---PELARRKIKVLEDRGEP--SFKT-SMKADLVI 316 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~---~el~~~gI~v~~~~~~~--~~~~-~~k~DlVi 316 (732)
++ ++|+...+.-| ..++++|++.|++|.+++-... ... .++...++.++..+... .+.. -..+|+||
T Consensus 12 ~~-ilVtGatG~iG-----~~l~~~L~~~g~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi 84 (318)
T 2r6j_A 12 SK-ILIFGGTGYIG-----NHMVKGSLKLGHPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVI 84 (318)
T ss_dssp CC-EEEETTTSTTH-----HHHHHHHHHTTCCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred Ce-EEEECCCchHH-----HHHHHHHHHCCCcEEEEECCCC-chhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEE
Confidence 45 45554433333 3567888999999988873222 222 23456788888765543 2333 23689997
Q ss_pred eCCc
Q 004760 317 AGSA 320 (732)
Q Consensus 317 a~Sa 320 (732)
....
T Consensus 85 ~~a~ 88 (318)
T 2r6j_A 85 SALA 88 (318)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 7654
No 234
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=22.54 E-value=3.5e+02 Score=27.39 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHH----------hCCcEEEEcCCCch--hhh-hcCccEEEeCCch
Q 004760 259 LSMMELATELLSCGATVSAVVLSKRGGLMPELA----------RRKIKVLEDRGEPS--FKT-SMKADLVIAGSAV 321 (732)
Q Consensus 259 ~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~----------~~gI~v~~~~~~~~--~~~-~~k~DlVia~Sav 321 (732)
-.=..|+++|++.|++|.++.-...+ ....+. ..++.++..+.... +.. ..++|+||...+.
T Consensus 38 ~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~ 112 (352)
T 1sb8_A 38 FIGSNLLETLLKLDQKVVGLDNFATG-HQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAAL 112 (352)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSC-CHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCcc-chhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCEEEECCcc
Confidence 34456788899999999988733222 112221 25777766554322 333 2379999776553
No 235
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=22.52 E-value=1.5e+02 Score=27.32 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=42.0
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCCch
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~Sav 321 (732)
.+||++|..+. .|.++..+-.+|..|.+.|++|.++-+..... ..++ ...-.++|.||.++.+
T Consensus 4 ~~kv~IvY~S~-~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~-~~~~---------------~~~~~~~d~ii~Gspt 66 (159)
T 3fni_A 4 ETSIGVFYVSE-YGYSDRLAQAIINGITKTGVGVDVVDLGAAVD-LQEL---------------RELVGRCTGLVIGMSP 66 (159)
T ss_dssp CCEEEEEECTT-STTHHHHHHHHHHHHHHTTCEEEEEESSSCCC-HHHH---------------HHHHHTEEEEEEECCB
T ss_pred CCEEEEEEECC-ChHHHHHHHHHHHHHHHCCCeEEEEECcCcCC-HHHH---------------HHHHHhCCEEEEEcCc
Confidence 35777777665 36677778889999999999998887553201 1111 1123468888887755
Q ss_pred h
Q 004760 322 C 322 (732)
Q Consensus 322 ~ 322 (732)
.
T Consensus 67 y 67 (159)
T 3fni_A 67 A 67 (159)
T ss_dssp T
T ss_pred C
Confidence 4
No 236
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=22.51 E-value=1.1e+02 Score=30.17 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=40.3
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC----ChhHHHhCCcEEEEcCCCch----hh-------
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEPS----FK------- 307 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~----l~~el~~~gI~v~~~~~~~~----~~------- 307 (732)
.|+++|+.. +.-.=..+|++|++.|++|.++. +... +..++...+.++.....+.. +.
T Consensus 29 ~k~vlITGa-----s~gIG~~la~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 29 GQVAVVTGA-----SRGIGAAIARKLGSLGARVVLTA--RDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp TCEEEESST-----TSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECC-----CChHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHH
Confidence 466777533 23344567899999999987765 3221 22344444544433332222 11
Q ss_pred -hhcCccEEEeCCch
Q 004760 308 -TSMKADLVIAGSAV 321 (732)
Q Consensus 308 -~~~k~DlVia~Sav 321 (732)
...++|+||.+..+
T Consensus 102 ~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 102 AAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHSCCSEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 12479999887654
No 237
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=22.40 E-value=1.6e+02 Score=28.77 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCCCCCcEEEc----cchhhHHHHHHHcCEEEEccCCCCCCC-----------cHHHHHHHHcCCCEE
Q 004760 589 PYVKEILEFLSQHSNLSKAMLWT----PATTRVASLYSAADVYVINSQGLGETF-----------GRVTIEAMAFGVPVL 653 (732)
Q Consensus 589 ~y~k~il~~l~~~l~l~~~V~f~----G~~~dv~~lysaADv~V~pS~~~~Egf-----------g~vilEAMA~GlPVI 653 (732)
+|+....+.+.+ +|. .+..+ ...+++.+.+..||.+++|- ++.+ --.+-|+...|+|++
T Consensus 44 ~~~~s~~~a~~~-lG~--~v~~~~i~~~~~~~~~~~l~~ad~I~l~G---G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~ 117 (206)
T 3l4e_A 44 FYVEAGKKALES-LGL--LVEELDIATESLGEITTKLRKNDFIYVTG---GNTFFLLQELKRTGADKLILEEIAAGKLYI 117 (206)
T ss_dssp HHHHHHHHHHHH-TTC--EEEECCTTTSCHHHHHHHHHHSSEEEECC---SCHHHHHHHHHHHTHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHH-cCC--eEEEEEecCCChHHHHHHHHhCCEEEECC---CCHHHHHHHHHHCChHHHHHHHHHcCCeEE
Confidence 455555555543 366 46666 35567888999999999986 4432 235677778899999
Q ss_pred EcCCC
Q 004760 654 GTDAG 658 (732)
Q Consensus 654 ~td~g 658 (732)
++.+|
T Consensus 118 G~sAG 122 (206)
T 3l4e_A 118 GESAG 122 (206)
T ss_dssp EETHH
T ss_pred EECHH
Confidence 98764
No 238
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=22.40 E-value=1.1e+02 Score=28.75 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=29.3
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
.||++|..+ .|-....+-.++..|.+.|++|.++.+...
T Consensus 5 mkilii~~S--~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG--YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC--SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC--ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 589999888 333555566677888888999999987553
No 239
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=22.40 E-value=1.2e+02 Score=29.88 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=43.6
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeCCCCC-ChhHHHhCCcEEEEcCCCc---------h---hh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGEP---------S---FK 307 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~--G~~V~vv~l~~~g~-l~~el~~~gI~v~~~~~~~---------~---~~ 307 (732)
+||.+++ +.+| ..+..+..+|.+. +++|.+|...+... ..+..++.||+++...... . ..
T Consensus 4 ~ki~vl~---sG~g--~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l 78 (212)
T 3av3_A 4 KRLAVFA---SGSG--TNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILREL 78 (212)
T ss_dssp EEEEEEC---CSSC--HHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred cEEEEEE---ECCc--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHH
Confidence 3565552 2233 3566777777776 68888777554332 3445678999998643211 1 33
Q ss_pred hhcCccEEEeC
Q 004760 308 TSMKADLVIAG 318 (732)
Q Consensus 308 ~~~k~DlVia~ 318 (732)
+..+||++++-
T Consensus 79 ~~~~~Dliv~a 89 (212)
T 3av3_A 79 KGRQIDWIALA 89 (212)
T ss_dssp HHTTCCEEEES
T ss_pred HhcCCCEEEEc
Confidence 47899999553
No 240
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=22.31 E-value=3.4e+02 Score=22.52 Aligned_cols=85 Identities=11% Similarity=0.068 Sum_probs=49.7
Q ss_pred cEEEccchhhHHHHHHH---cCEEEEccCCCCC-CCcHHHHHHHH---cCCCEEEc-CCCChhhhhcc-CceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYSA---ADVYVINSQGLGE-TFGRVTIEAMA---FGVPVLGT-DAGGTKEIVEH-NVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa---ADv~V~pS~~~~E-gfg~vilEAMA---~GlPVI~t-d~gG~~EiVe~-g~~Gll~~~~d 677 (732)
.|......++....+.. .|++++-.. +.+ .-|.-+++.+. ..+|+|.. ........... ...+++..+-+
T Consensus 31 ~v~~~~~~~~a~~~l~~~~~~dlvi~d~~-l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~l~kP~~ 109 (132)
T 2rdm_A 31 LVTAVSSGAKAIEMLKSGAAIDGVVTDIR-FCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDSIILEKPFT 109 (132)
T ss_dssp EEEEESSHHHHHHHHHTTCCCCEEEEESC-CSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTCEEEESSCC
T ss_pred EEEEECCHHHHHHHHHcCCCCCEEEEeee-CCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCcceEeCCCC
Confidence 34444444555555543 588887654 243 45666777664 36788764 33322222211 11368888887
Q ss_pred CcHHHHHHHHHHHhcCH
Q 004760 678 PGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~ 694 (732)
. +.|...+.+++...
T Consensus 110 ~--~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 110 S--AQLITAVSQLLNAR 124 (132)
T ss_dssp H--HHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHhcC
Confidence 7 89999998887643
No 241
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=22.31 E-value=1.7e+02 Score=28.99 Aligned_cols=74 Identities=20% Similarity=0.049 Sum_probs=40.9
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh--CCcEEEEcCCCch--hh--------hhc
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPS--FK--------TSM 310 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~--~gI~v~~~~~~~~--~~--------~~~ 310 (732)
.|+++|+... .-.=..+|++|++.|++|.++... ...+...... .++.++..+.... +. +..
T Consensus 11 ~k~vlVTGas-----~gIG~aia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (271)
T 3tzq_B 11 NKVAIITGAC-----GGIGLETSRVLARAGARVVLADLP-ETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFG 84 (271)
T ss_dssp TCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEEECT-TSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-----cHHHHHHHHHHHHCCCEEEEEcCC-HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3566675432 233457889999999998877632 2333222222 3445554433221 11 123
Q ss_pred CccEEEeCCchh
Q 004760 311 KADLVIAGSAVC 322 (732)
Q Consensus 311 k~DlVia~Sav~ 322 (732)
++|+++.+..+.
T Consensus 85 ~id~lv~nAg~~ 96 (271)
T 3tzq_B 85 RLDIVDNNAAHS 96 (271)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 899998886543
No 242
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.21 E-value=3.4e+02 Score=22.47 Aligned_cols=85 Identities=13% Similarity=0.030 Sum_probs=53.1
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc-----CCCEEEc-CCCC--hhhhhccCceEEEECCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DAGG--TKEIVEHNVTGLLHPPG 676 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~-----GlPVI~t-d~gG--~~EiVe~g~~Gll~~~~ 676 (732)
.|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|+|.. .... ..+.+..+..+++..|-
T Consensus 29 ~v~~~~~~~~a~~~l~~~~~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~ 107 (127)
T 3i42_A 29 QADYVMSGTDALHAMSTRGYDAVFIDLN-LPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPI 107 (127)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEESB-CSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSC
T ss_pred CEEEECCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCC
Confidence 45554444555555543 578777654 355567777777753 4677763 2221 14455567789999998
Q ss_pred CCcHHHHHHHHHHHhcCH
Q 004760 677 HPGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 677 d~~~e~La~aL~~LL~n~ 694 (732)
+. +.|.+++......+
T Consensus 108 ~~--~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 108 DI--ASLEPILQSIEGHH 123 (127)
T ss_dssp CH--HHHHHHHHHHC---
T ss_pred CH--HHHHHHHHHhhccC
Confidence 88 99999998876643
No 243
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=22.12 E-value=1e+02 Score=30.62 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=26.7
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
.+|||++.+ +.+-|-....+|++.|.+.|++|.+|.
T Consensus 3 ~~k~Illgv---TGaiaa~k~~~ll~~L~~~g~eV~vv~ 38 (209)
T 3zqu_A 3 GPERITLAM---TGASGAQYGLRLLDCLVQEEREVHFLI 38 (209)
T ss_dssp SCSEEEEEE---CSSSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEE---ECHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 346777763 222244558899999999999999998
No 244
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=22.11 E-value=1.5e+02 Score=26.78 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=30.3
Q ss_pred CCeEEEEeCCCC-CCcHHHHHHHHHHHHHHCCCEEEEEEeC
Q 004760 242 SRKFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLS 281 (732)
Q Consensus 242 ~~kIllI~h~ls-~gGA~~~~~eLA~~L~~~G~~V~vv~l~ 281 (732)
.+|+++|+.+.- ........+.+|...++.|++|.++...
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~ 55 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMI 55 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 578888877742 2445667889999999999999988743
No 245
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=22.03 E-value=1.5e+02 Score=30.34 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=36.4
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
+.+++.|+...+.-|......+||..|++.|..|.+|-+.-.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 457888888888889999999999999999999999986543
No 246
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=21.98 E-value=2e+02 Score=28.66 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=40.9
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC---ChhHHHhCCcEEEEcCCCch-------h----hh
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEPS-------F----KT 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~---l~~el~~~gI~v~~~~~~~~-------~----~~ 308 (732)
.|+++|+... .-.=..+|+.|++.|++|.++. +... ...++...+.++.....+.. + ..
T Consensus 31 gk~~lVTGas-----~GIG~aia~~la~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (273)
T 3uf0_A 31 GRTAVVTGAG-----SGIGRAIAHGYARAGAHVLAWG--RTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAA 103 (273)
T ss_dssp TCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEEE--SSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEc--CHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHh
Confidence 4566775433 2233568899999999988776 3322 22344455544443332222 1 11
Q ss_pred hcCccEEEeCCch
Q 004760 309 SMKADLVIAGSAV 321 (732)
Q Consensus 309 ~~k~DlVia~Sav 321 (732)
..++|++|.+..+
T Consensus 104 ~g~iD~lv~nAg~ 116 (273)
T 3uf0_A 104 TRRVDVLVNNAGI 116 (273)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCcEEEECCCC
Confidence 3489999887643
No 247
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=21.78 E-value=41 Score=33.37 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=26.7
Q ss_pred cchhhhhccCCeEEEEeCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Q 004760 233 KGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVV 279 (732)
Q Consensus 233 ~~~~~~~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~-~G~~V~vv~ 279 (732)
.+++..-+.++||++.+ +.+.+-....+|++.|.+ .|++|.+|.
T Consensus 10 ~~~~~~~l~~k~Illgv---TGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 10 PAAAPLMERKFHVLVGV---TGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp ------CCSSEEEEEEE---CSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred chhhhcccCCCEEEEEE---eChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44445556678888774 233344556899999998 899999997
No 248
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=21.65 E-value=1e+02 Score=30.92 Aligned_cols=33 Identities=12% Similarity=-0.055 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
..|+++|+... .-.=..+|+.|++.|++|.++.
T Consensus 26 ~~k~vlVTGas-----~GIG~aia~~l~~~G~~V~~~~ 58 (277)
T 4dqx_A 26 NQRVCIVTGGG-----SGIGRATAELFAKNGAYVVVAD 58 (277)
T ss_dssp TTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCC-----cHHHHHHHHHHHHCCCEEEEEe
Confidence 45677776433 2334568899999999988776
No 249
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Probab=21.60 E-value=1e+02 Score=29.08 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=32.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g 284 (732)
+.+|+++|....+........++..|.+.|+.|.++-+...|
T Consensus 46 ~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 87 (270)
T 3pfb_A 46 YDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHG 87 (270)
T ss_dssp EEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTST
T ss_pred CCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEcccccc
Confidence 568888898776654666889999999999998888654333
No 250
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.56 E-value=3.7e+02 Score=22.71 Aligned_cols=84 Identities=8% Similarity=0.112 Sum_probs=51.9
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH---cCCCEEEc-CCCC---hhhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGG---TKEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA---~GlPVI~t-d~gG---~~EiVe~g~~Gll~~~~d 677 (732)
.|.......+....+.. .|++++-. +.+.-|.-+++.+. ..+|+|.- .... ..+.+..|..+++..+-+
T Consensus 30 ~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~ 107 (142)
T 2qxy_A 30 NVIWAKNEQEAFTFLRREKIDLVFVDV--FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFR 107 (142)
T ss_dssp EEEEESSHHHHHHHHTTSCCSEEEEEC--TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCC
T ss_pred EEEEECCHHHHHHHHhccCCCEEEEeC--CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCC
Confidence 45544444455555543 57777654 24444555666553 25787764 3333 233445678899999888
Q ss_pred CcHHHHHHHHHHHhcCH
Q 004760 678 PGAQVLAQNLRYLLKNP 694 (732)
Q Consensus 678 ~~~e~La~aL~~LL~n~ 694 (732)
. +.|...+..++...
T Consensus 108 ~--~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 108 L--DYLLERVKKIISST 122 (142)
T ss_dssp H--HHHHHHHHHHHHC-
T ss_pred H--HHHHHHHHHHHhhc
Confidence 7 99999999988754
No 251
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=21.46 E-value=1.6e+02 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=35.9
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
|++.|+ .-+..|-.....+||..|++.|+.|.+|=+...++....+
T Consensus 3 kvIavs-~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~ 48 (289)
T 2afh_E 3 RQCAIY-GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLI 48 (289)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHH
T ss_pred eEEEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHh
Confidence 555565 4556688888999999999999999999877766655544
No 252
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=21.40 E-value=2.6e+02 Score=28.40 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=51.4
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-CChhHHH-hCCcE--------EEEcCCCch--------
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPELA-RRKIK--------VLEDRGEPS-------- 305 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-~l~~el~-~~gI~--------v~~~~~~~~-------- 305 (732)
||| |+.+-+..-. -+..|+++|.+.| +|.||.+.... +....+. ...+. .....+.+.
T Consensus 3 ~IL-lTNDDGi~ap--Gi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~~~~~v~GTPaDCV~lal~ 78 (251)
T 2wqk_A 3 TFL-LVNDDGYFSP--GINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTVIDGTPADCVHLGYR 78 (251)
T ss_dssp EEE-EECSSCTTCH--HHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEETTEEEETTCCHHHHHHHHHH
T ss_pred EEE-EEcCCCCCcH--HHHHHHHHHHhCC-CEEEEeeCCCCcccccCcCCCCCceeEEeeccceeecCCChHHHHhhhhh
Confidence 444 5555555433 3556788898888 69998876532 1111110 01111 122233333
Q ss_pred -hhhhcCccEEEeCC---------chhhHHHHHHHHhhcCCCccEEEEEe
Q 004760 306 -FKTSMKADLVIAGS---------AVCATWIDQYITRFPAGGSQVVWWIM 345 (732)
Q Consensus 306 -~~~~~k~DlVia~S---------av~~~~i~~~i~~~~~~~~~ivw~i~ 345 (732)
+....+||+|+.+- ......+.+.+.....|.+.+.....
T Consensus 79 ~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~ 128 (251)
T 2wqk_A 79 VILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp TTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEcc
Confidence 22245899999851 11112233566666778887766654
No 253
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=21.35 E-value=82 Score=30.43 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCC-CEEEEEEeCCCCCChhHHHhCCcEEEEcCCCch--hhh-hcCccEEEeCC
Q 004760 259 LSMMELATELLSCG-ATVSAVVLSKRGGLMPELARRKIKVLEDRGEPS--FKT-SMKADLVIAGS 319 (732)
Q Consensus 259 ~~~~eLA~~L~~~G-~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~--~~~-~~k~DlVia~S 319 (732)
-.=..+++.|++.| ++|.+++-. ..-..++...++.++..+.... +.. -..+|+||.+.
T Consensus 34 ~iG~~l~~~L~~~G~~~V~~~~R~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 34 QIARHVINQLADKQTIKQTLFARQ--PAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEESS--GGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHhCCCceEEEEEcC--hhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 33456788999999 888887622 2111222334677666554322 332 23679987654
No 254
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.34 E-value=4.5e+02 Score=25.36 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=52.5
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHHc--CCCEEEcCC-CC---hhhhhccCceEEEECCCCC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF--GVPVLGTDA-GG---TKEIVEHNVTGLLHPPGHP 678 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA~--GlPVI~td~-gG---~~EiVe~g~~Gll~~~~d~ 678 (732)
.|.......+....+.. .|++++--. +.+.-|.-+++.+.. .+|||.-.. .. ..+.++.|..|++..+.+.
T Consensus 63 ~v~~~~~~~~al~~~~~~~~DlvllD~~-lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~ 141 (249)
T 3q9s_A 63 VVDHADSAMNGLIKAREDHPDLILLDLG-LPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHP 141 (249)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEECC-SCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCH
T ss_pred EEEEeCCHHHHHHHHhcCCCCEEEEcCC-CCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCH
Confidence 34444444444444443 688887654 244456666666653 578776433 33 2334456889999999887
Q ss_pred cHHHHHHHHHHHhc
Q 004760 679 GAQVLAQNLRYLLK 692 (732)
Q Consensus 679 ~~e~La~aL~~LL~ 692 (732)
+.|..+|..++.
T Consensus 142 --~~L~~~i~~~l~ 153 (249)
T 3q9s_A 142 --DELLARVKVQLR 153 (249)
T ss_dssp --HHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHh
Confidence 999999998765
No 255
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=21.29 E-value=2.5e+02 Score=26.32 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=43.7
Q ss_pred cCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHhCCcEEEEcCCCchhhhhcCccEEEeCC
Q 004760 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (732)
Q Consensus 241 ~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~~~~~~~k~DlVia~S 319 (732)
|+|||+++..+ |=.+.-+......|...|++|.+++....++.. ...|+.+..+....... ...+|+|+.-.
T Consensus 4 m~kkv~ill~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~---~~~g~~i~~d~~l~~~~-~~~~D~livpG 75 (190)
T 4e08_A 4 MSKSALVILAP---GAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVK---CSRDVQILPDTSLAQVA-SDKFDVVVLPG 75 (190)
T ss_dssp CCCEEEEEECT---TCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEE---CTTSCEEECSEETGGGT-TCCCSEEEECC
T ss_pred CCcEEEEEECC---CchHHHHHHHHHHHHHCCCEEEEEECCCCccee---cCCCcEEECCCCHHHCC-cccCCEEEECC
Confidence 45888888763 223455566667888899999999854423322 24677766543322221 23689886643
No 256
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=21.27 E-value=74 Score=32.28 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=45.0
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC----ChhHHHhCCcEEEEcCCCch------------h
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEPS------------F 306 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~----l~~el~~~gI~v~~~~~~~~------------~ 306 (732)
=|+++|+.. +.-.=..+|+.|++.|++|.++. .... ..+++...|.+++....+.. .
T Consensus 9 gKvalVTGa-----s~GIG~aia~~la~~Ga~Vvi~~--~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 9 GKTALVTGS-----ARGLGFAYAEGLAAAGARVILND--IRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp TCEEEETTC-----SSHHHHHHHHHHHHTTCEEEECC--SCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCC-----CcHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 467777533 23334567999999999987764 2221 23456677877777665543 1
Q ss_pred hhhcCccEEEeCCc
Q 004760 307 KTSMKADLVIAGSA 320 (732)
Q Consensus 307 ~~~~k~DlVia~Sa 320 (732)
.+..++|+++.|..
T Consensus 82 ~~~G~iDiLVNNAG 95 (255)
T 4g81_D 82 AEGIHVDILINNAG 95 (255)
T ss_dssp HTTCCCCEEEECCC
T ss_pred HHCCCCcEEEECCC
Confidence 12348999988754
No 257
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=21.27 E-value=4e+02 Score=25.85 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=41.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChh---HHHh----CCcEEEEcCCCch--hh---h--
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELAR----RKIKVLEDRGEPS--FK---T-- 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~---el~~----~gI~v~~~~~~~~--~~---~-- 308 (732)
.|.++|+...+..|.. ..+|++|++.|++|.++.- .....+ ++.. ..+.++..+.... +. .
T Consensus 7 ~k~vlVTGasg~~GIG---~~ia~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 7 GRNIVVMGVANKRSIA---WGIARSLHEAGARLIFTYA--GERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp TCEEEEECCCSTTSHH---HHHHHHHHHTTCEEEEEES--SGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHH---HHHHHHHHHCCCEEEEecC--chHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 4667776555433333 4678899999999877752 222222 2221 1455555544322 11 1
Q ss_pred ---hcCccEEEeCCch
Q 004760 309 ---SMKADLVIAGSAV 321 (732)
Q Consensus 309 ---~~k~DlVia~Sav 321 (732)
..++|++|.+..+
T Consensus 82 ~~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAF 97 (266)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCeeEEEEcccc
Confidence 2478999887654
No 258
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=21.18 E-value=1.6e+02 Score=29.87 Aligned_cols=64 Identities=6% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCC--CCChhHHH----hCCcEEEEcCCCch--hhh---hcCccEEEeCCch
Q 004760 258 PLSMMELATELLSCGATVSAVVLSKR--GGLMPELA----RRKIKVLEDRGEPS--FKT---SMKADLVIAGSAV 321 (732)
Q Consensus 258 ~~~~~eLA~~L~~~G~~V~vv~l~~~--g~l~~el~----~~gI~v~~~~~~~~--~~~---~~k~DlVia~Sav 321 (732)
.-.=..|+.+|++.|+++.|+++... ......+. ..++.++..+.... +.. ..++|+||...+.
T Consensus 34 G~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~ 108 (346)
T 4egb_A 34 GFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAE 108 (346)
T ss_dssp SHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEEEECCCC
T ss_pred cHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence 34445788899999966666655432 22222222 24677766554332 222 3469999766543
No 259
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=21.15 E-value=2.3e+02 Score=28.93 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=51.5
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC-CChhH------HH----hCCcEEEEcCCCch------h--
Q 004760 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPE------LA----RRKIKVLEDRGEPS------F-- 306 (732)
Q Consensus 246 llI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g-~l~~e------l~----~~gI~v~~~~~~~~------~-- 306 (732)
+||+.+-+..-. -+..|++.|.+.| +|.||.+.... +.... +. ..+.. +...+.+. +
T Consensus 4 ILlTNDDGi~ap--Gi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~sit~~~pl~~~~~~~~~~-~~v~GTPaDCV~lal~~ 79 (251)
T 2phj_A 4 FLLVNDDGYFSP--GINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFY-TVIDGTPADCVHLGYRV 79 (251)
T ss_dssp EEEECSSCTTCH--HHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEETTEE-EETTCCHHHHHHHHHHT
T ss_pred EEEECCCCCCCH--HHHHHHHHHHhcC-CEEEEecCCCccCCccceecCCCeEEEEecCCCe-EEECCCHHHHHHHHHHH
Confidence 455666555433 3567788888888 99999976532 11110 00 11111 33344433 2
Q ss_pred -hhhcCccEEEeCC---------chhhHHHHHHHHhhcCCCccEEEEE
Q 004760 307 -KTSMKADLVIAGS---------AVCATWIDQYITRFPAGGSQVVWWI 344 (732)
Q Consensus 307 -~~~~k~DlVia~S---------av~~~~i~~~i~~~~~~~~~ivw~i 344 (732)
....+||+|+.+- .+....+.+.+.....|.|.+....
T Consensus 80 l~~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 127 (251)
T 2phj_A 80 ILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp TTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred hcCCCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEc
Confidence 2125899999861 1112223355666677888776655
No 260
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=21.09 E-value=79 Score=31.12 Aligned_cols=38 Identities=37% Similarity=0.497 Sum_probs=28.7
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Q 004760 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (732)
Q Consensus 246 llI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~ 285 (732)
|+++|. ++|....+..+|..|.+.||.|.++-+...|.
T Consensus 54 VlllHG--~~~s~~~~~~la~~La~~Gy~Via~Dl~GhG~ 91 (281)
T 4fbl_A 54 VLVSHG--FTGSPQSMRFLAEGFARAGYTVATPRLTGHGT 91 (281)
T ss_dssp EEEECC--TTCCGGGGHHHHHHHHHTTCEEEECCCTTSSS
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 556785 45666678889999999999998887654443
No 261
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=21.00 E-value=1.4e+02 Score=29.97 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=22.0
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~ 283 (732)
|.+++||+|..--. =.++.+=-+...+.+.|++|.+++++..
T Consensus 1 ~~~~~vL~v~aHPD--De~l~~Ggtia~~~~~G~~V~vv~lT~G 42 (242)
T 2ixd_A 1 MSGLHILAFGAHAD--DVEIGMAGTIAKYTKQGYEVGICDLTEA 42 (242)
T ss_dssp -CCCSEEEEESSTT--HHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred CCCccEEEEEeCCC--hHHHhHHHHHHHHHHCCCeEEEEEEcCC
Confidence 34566776664332 1111111122244568999999998753
No 262
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=20.98 E-value=60 Score=32.52 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=36.7
Q ss_pred hccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC----CChhHHHhC-CcEEEE
Q 004760 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG----GLMPELARR-KIKVLE 299 (732)
Q Consensus 239 ~~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g----~l~~el~~~-gI~v~~ 299 (732)
...+++|++| |+..+.+++|..|.+.|.+|+++.....- .+...+.+. ||+++.
T Consensus 170 ~~~~~~v~vv-------G~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~ 228 (338)
T 3itj_A 170 IFRNKPLAVI-------GGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILY 228 (338)
T ss_dssp GGTTSEEEEE-------CSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEEC
T ss_pred hcCCCEEEEE-------CCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEee
Confidence 4567888888 44557889999999999999988733211 123445444 777653
No 263
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=20.92 E-value=1.5e+02 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=35.3
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
|++.|+ .-+..|-.....+||..|++.|+.|.+|=+...++....+
T Consensus 2 ~vI~vs-~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~ 47 (269)
T 1cp2_A 2 RQVAIY-GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLL 47 (269)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHH
T ss_pred cEEEEe-cCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHh
Confidence 455555 4555688888999999999999999999877666655544
No 264
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=20.84 E-value=1.3e+02 Score=26.90 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK 282 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~ 282 (732)
+||+++..+. .|.++...-.+|..|.+.|++|.++.+..
T Consensus 2 ~ki~I~y~S~-tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 2 SKVLIVFGSS-TGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp CEEEEEEECS-SSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 3677776663 34467777788999999999999887543
No 265
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=20.77 E-value=1.3e+02 Score=29.21 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=32.0
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC---ChhHHHhCCcEEEEc
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLED 300 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~---l~~el~~~gI~v~~~ 300 (732)
|...|+++|+.. +.-.=..+|++|++.|+.|.++.-..... ...++...+.++...
T Consensus 4 ~l~~k~vlITGa-----s~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (255)
T 3icc_A 4 MLKGKVALVTGA-----SRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSI 62 (255)
T ss_dssp TTTTCEEEETTC-----SSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEECC-----CChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEE
Confidence 344566777433 22344678899999999998876222222 223444555555433
No 266
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=20.67 E-value=1.4e+02 Score=30.03 Aligned_cols=75 Identities=13% Similarity=-0.046 Sum_probs=42.2
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC----ChhHHHhCCcEEEEcCCCch----h---h---
Q 004760 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEPS----F---K--- 307 (732)
Q Consensus 242 ~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~----l~~el~~~gI~v~~~~~~~~----~---~--- 307 (732)
..|+++|+... .-.=..+|++|++.|++|.++....... +...++..+.++.....+.. + .
T Consensus 48 ~~k~vlVTGas-----~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 48 KDRKALVTGGD-----SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp TTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 34667776432 2333578899999999987765332211 12233445555554444432 1 1
Q ss_pred --hhcCccEEEeCCch
Q 004760 308 --TSMKADLVIAGSAV 321 (732)
Q Consensus 308 --~~~k~DlVia~Sav 321 (732)
...++|++|.+..+
T Consensus 123 ~~~~g~iD~lv~nAg~ 138 (294)
T 3r3s_A 123 REALGGLDILALVAGK 138 (294)
T ss_dssp HHHHTCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 12489999887643
No 267
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=20.61 E-value=1.7e+02 Score=29.32 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=40.4
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC---hhHHHhCC--cEEEEcCCCch--hh---h----
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRK--IKVLEDRGEPS--FK---T---- 308 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l---~~el~~~g--I~v~~~~~~~~--~~---~---- 308 (732)
.|+++|+...+ | .=..+|+.|++.|++|.++.-. ...+ ..++...+ +.++..+.... +. .
T Consensus 32 gk~~lVTGas~--G---IG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 32 GKRALITGAST--G---IGKKVALAYAEAGAQVAVAARH-SDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp TCEEEEESTTS--H---HHHHHHHHHHHTTCEEEEEESS-GGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC--H---HHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45677764332 2 3346889999999998887632 2222 23444443 44444333221 11 1
Q ss_pred -hcCccEEEeCCch
Q 004760 309 -SMKADLVIAGSAV 321 (732)
Q Consensus 309 -~~k~DlVia~Sav 321 (732)
..++|++|.+..+
T Consensus 106 ~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 106 ELGGIDIAVCNAGI 119 (276)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 2389999887643
No 268
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=20.47 E-value=2.2e+02 Score=27.25 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=38.7
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC---hhHHHhCC--cEEEEcCCCch--hhh--------
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRK--IKVLEDRGEPS--FKT-------- 308 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l---~~el~~~g--I~v~~~~~~~~--~~~-------- 308 (732)
|.++|+. |+.-.=..+|++|++.|++|.++.-.....+ ..++...+ +.++..+.... +..
T Consensus 8 k~vlVTG-----asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 8 KRVLITG-----SSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp CEEEETT-----CSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEeC-----CCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4556653 2333345688899999999888763212222 22333334 33443333221 111
Q ss_pred hcCccEEEeCCch
Q 004760 309 SMKADLVIAGSAV 321 (732)
Q Consensus 309 ~~k~DlVia~Sav 321 (732)
..++|+||.+..+
T Consensus 83 ~g~id~vi~~Ag~ 95 (258)
T 3afn_B 83 FGGIDVLINNAGG 95 (258)
T ss_dssp HSSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1279999877653
No 269
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=20.46 E-value=2.2e+02 Score=28.08 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=40.3
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHHHh--CCcEEEEcCCCch--hhh--------hc
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPS--FKT--------SM 310 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el~~--~gI~v~~~~~~~~--~~~--------~~ 310 (732)
.|.++|+. |+.-.=..+|++|++.|++|.++.- ....+.+.... .++.++..+.... +.. ..
T Consensus 5 ~k~vlVTG-----as~gIG~~~a~~l~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (281)
T 3m1a_A 5 AKVWLVTG-----ASSGFGRAIAEAAVAAGDTVIGTAR-RTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYG 78 (281)
T ss_dssp CCEEEETT-----TTSHHHHHHHHHHHHTTCEEEEEES-SGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CcEEEEEC-----CCChHHHHHHHHHHHCCCEEEEEeC-CHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 45667743 2333345788899999999987762 22223222222 3455555443322 111 23
Q ss_pred CccEEEeCCch
Q 004760 311 KADLVIAGSAV 321 (732)
Q Consensus 311 k~DlVia~Sav 321 (732)
++|+||.+...
T Consensus 79 ~id~lv~~Ag~ 89 (281)
T 3m1a_A 79 RVDVLVNNAGR 89 (281)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999887543
No 270
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=20.45 E-value=1.1e+02 Score=29.35 Aligned_cols=46 Identities=11% Similarity=-0.074 Sum_probs=36.0
Q ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 244 kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
+++.|+..-+..|-.....+||..|++.| .|.++-+...+.+...+
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHh
Confidence 35666666777899999999999999999 99999877666544433
No 271
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=20.31 E-value=5.7e+02 Score=24.39 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=53.8
Q ss_pred cEEEccchhhHHHHHH--HcCEEEEccCCCCCCCcHHHHHHHHc---CCCEEEc-CCCCh---hhhhccCceEEEECCCC
Q 004760 607 AMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAF---GVPVLGT-DAGGT---KEIVEHNVTGLLHPPGH 677 (732)
Q Consensus 607 ~V~f~G~~~dv~~lys--aADv~V~pS~~~~Egfg~vilEAMA~---GlPVI~t-d~gG~---~EiVe~g~~Gll~~~~d 677 (732)
.|.......+....+. ..|++++--. +.+.-|.-+++.+.. .+|||.- ..... .+.++.|..+++..+-+
T Consensus 49 ~v~~~~~~~~al~~~~~~~~dlvllD~~-lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~ 127 (250)
T 3r0j_A 49 EVYTATNGAQALDRARETRPDAVILDVX-MPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFS 127 (250)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEESC-CSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCC
T ss_pred EEEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCC
Confidence 3444443444444443 3688887654 355567777777743 5788764 33332 33456788999999988
Q ss_pred CcHHHHHHHHHHHhc
Q 004760 678 PGAQVLAQNLRYLLK 692 (732)
Q Consensus 678 ~~~e~La~aL~~LL~ 692 (732)
. +.|..+|..++.
T Consensus 128 ~--~~L~~~i~~~~~ 140 (250)
T 3r0j_A 128 L--EEVVARLRVILR 140 (250)
T ss_dssp H--HHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHH
Confidence 7 999999988764
No 272
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=20.28 E-value=4e+02 Score=22.57 Aligned_cols=84 Identities=10% Similarity=0.097 Sum_probs=51.2
Q ss_pred cEEEccchhhHHHHHHH--cCEEEEccCCCCCCCcHHHHHHHH--------cCCCEEEc-CCCChhhhhccCceEEEECC
Q 004760 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA--------FGVPVLGT-DAGGTKEIVEHNVTGLLHPP 675 (732)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~~~Egfg~vilEAMA--------~GlPVI~t-d~gG~~EiVe~g~~Gll~~~ 675 (732)
.+.......+....+.. .|++++-.. +.+.-|..+++.+. ..+|++.. ...........+..+++..+
T Consensus 36 ~v~~~~~~~~al~~l~~~~~dlvllD~~-lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP 114 (140)
T 3c97_A 36 DITVVTNGLQALQAYQNRQFDVIIMDIQ-MPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDEYVSKP 114 (140)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEECTT-CCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCCCSSCSEEEESS
T ss_pred ceEEECCHHHHHHHHhcCCCCEEEEeCC-CCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHHhCChhheEeCC
Confidence 35544444454444443 688887654 23445666777664 24666653 33322233355667899998
Q ss_pred CCCcHHHHHHHHHHHhcC
Q 004760 676 GHPGAQVLAQNLRYLLKN 693 (732)
Q Consensus 676 ~d~~~e~La~aL~~LL~n 693 (732)
-+. +.|..++..++..
T Consensus 115 ~~~--~~L~~~i~~~~~~ 130 (140)
T 3c97_A 115 LNP--NQLRDVVLTCHSE 130 (140)
T ss_dssp CCH--HHHHHHHHHHHC-
T ss_pred CCH--HHHHHHHHHHhCC
Confidence 887 9999999888753
No 273
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=20.26 E-value=1.3e+02 Score=30.16 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=36.9
Q ss_pred CCeEEEEeC-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCChhHH
Q 004760 242 SRKFILIFH-ELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (732)
Q Consensus 242 ~~kIllI~h-~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~~g~l~~el 290 (732)
++.|++... .-+..|-.....+||..|++.|+.|.+|-+...+++...+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l 83 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDL 83 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 455655555 4456689999999999999999999999877666544334
No 274
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=20.15 E-value=2e+02 Score=27.28 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCC--EEEEEEeCCCCCChhHHHhCCcEEEEcCCCc--hhhh-hcCccEEEeCCch
Q 004760 260 SMMELATELLSCGA--TVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGSAV 321 (732)
Q Consensus 260 ~~~eLA~~L~~~G~--~V~vv~l~~~g~l~~el~~~gI~v~~~~~~~--~~~~-~~k~DlVia~Sav 321 (732)
.=..++++|+++|+ +|.++.-.. ..+. ++...++.++..+... .+.. -.++|+||.+...
T Consensus 30 iG~~l~~~L~~~G~~~~V~~~~r~~-~~~~-~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~ 94 (242)
T 2bka_A 30 TGRVLLKEILEQGLFSKVTLIGRRK-LTFD-EEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 94 (242)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEESSC-CCCC-SGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCCEEEEEEcCC-CCcc-ccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence 34567888999999 988887322 2221 1222356665544322 1332 2368999777543
No 275
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=20.08 E-value=1e+02 Score=31.49 Aligned_cols=74 Identities=9% Similarity=0.067 Sum_probs=43.1
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC---------CC---CChhHHHhCCcEEEEcCCCch----h
Q 004760 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK---------RG---GLMPELARRKIKVLEDRGEPS----F 306 (732)
Q Consensus 243 ~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~l~~---------~g---~l~~el~~~gI~v~~~~~~~~----~ 306 (732)
.|+++|+. |+.-.=..+|+.|++.|++|.++.... .. .+..++...+.++.....+.. +
T Consensus 27 gk~vlVTG-----as~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 27 GRVVIVTG-----AGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp TCEEEETT-----TTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred CCEEEEEC-----CCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 46677753 233334578899999999998875320 11 123445556666655544433 1
Q ss_pred ---hh-----hcCccEEEeCCch
Q 004760 307 ---KT-----SMKADLVIAGSAV 321 (732)
Q Consensus 307 ---~~-----~~k~DlVia~Sav 321 (732)
.. ..++|++|.+..+
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~ 124 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGI 124 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 11 2389999887654
No 276
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=20.00 E-value=60 Score=31.85 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=27.4
Q ss_pred ccCCeEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Q 004760 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (732)
Q Consensus 240 ~~~~kIllI~h~ls~gGA~~~~~eLA~~L~~~G~~V~vv~ 279 (732)
+.++||++.+ +.+.+-....+|++.|.+.|++|.+|.
T Consensus 6 l~~k~Illgv---TGs~aa~k~~~l~~~L~~~g~~V~vv~ 42 (194)
T 1p3y_1 6 LKDKKLLIGI---CGSISSVGISSYLLYFKSFFKEIRVVM 42 (194)
T ss_dssp GGGCEEEEEE---CSCGGGGGTHHHHHHHTTTSSEEEEEE
T ss_pred cCCCEEEEEE---ECHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3457887764 233334467899999999999999997
Done!