BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004761
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
P YFRCP+SLELM DPVIV++GQTYER IQKWLD G CPK+++TL H L PNY +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 296 KAMIENWCEENNL 308
K++I WCE N +
Sbjct: 65 KSLIALWCESNGI 77
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+++L S HA+T L NL ++ E M AG ++ +
Sbjct: 222 HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592
+ +L N + L L+ +E K I SG +ALV+++ + T +
Sbjct: 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341
Query: 593 LFN-LSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
+ LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 399
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI + L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 567 EIVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 625
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS--VLEEYKAKI 565
I GA PL +L S N G +AA LF +S ++YK ++
Sbjct: 626 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL 673
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 338 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 394
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 395 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 454
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 455 DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 544
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV ++ S +A + L L LH V G
Sbjct: 217 LHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG 276
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 277 GLQKMVAL 284
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 87 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 146
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 147 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 206
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 207 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 264
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 265 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 312
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 432 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 490
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 491 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 527
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 143 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 202
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 203 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 259
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 260 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 319
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 320 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 379
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 380 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 409
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 82 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 141
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 142 GLQKMVAL 149
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 90 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 149
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 150 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 209
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 210 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 267
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 268 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 315
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 435 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 493
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 494 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 530
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 146 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 205
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 206 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 262
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 263 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 322
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 323 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 382
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 383 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 412
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 85 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 144
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 145 GLQKMVAL 152
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 93 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 152
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 153 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 212
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 213 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 270
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 271 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 318
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 438 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 496
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 497 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 533
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 149 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 208
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 209 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 265
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 266 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 325
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 326 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 385
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 386 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 415
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 88 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 147
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 148 GLQKMVAL 155
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 92 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 151
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 152 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 211
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 212 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 269
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 270 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 317
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 437 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 495
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 496 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 532
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 148 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 207
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 208 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 264
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 265 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 324
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 325 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 384
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 385 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 414
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 87 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 146
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 147 GLQKMVAL 154
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 125/223 (56%), Gaps = 16/223 (7%)
Query: 449 KLIEDLNSTSNEIQASAAAEL-RLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
++ + LNS + Q SA + ++L+ N + + +I + GA+P L+ LL S + + A
Sbjct: 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQILQEA 74
Query: 508 VTALLNLSI--NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-----EE 560
+ AL N++ N++ +A+I +AGA+ L+ +L S N ++ AL++LS + E+
Sbjct: 75 LWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQ 130
Query: 561 YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQAGAVKHLVDLM 619
+A I +GA+ ALV LL S + ++A AL N+ S +E +I AGA+ LV L+
Sbjct: 131 IQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 620 -DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661
P+ ++ +A+ L+N+++ G + +E G +E ++S
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 4/145 (2%)
Query: 559 EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQAGAVKHLVD 617
E+ +A I +GA+ ALV LL S + ++A AL N+ S +E +I AGA+ LV
Sbjct: 45 EQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103
Query: 618 LMD-PSTGMVDKAVALLANLSTVGEGRL-AIAREGGIPSLVEVVESGSQRGKENAASILL 675
L+ P+ ++ +A+ L+N+++ G ++ A+ G +P+LV+++ S +++ + A L
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 676 QLCLHSPKFCTLVLQEGAVPPLVGL 700
+ + V+ GA+P LV L
Sbjct: 164 NIASGGNEQIQAVIDAGALPALVQL 188
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 596 LSIFHENKARIIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEGRL-AIAREGGIP 653
LS +E +I AGA+ LV L+ P+ ++ +A+ L+N+++ G ++ A+ G +P
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99
Query: 654 SLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
+LV+++ S +++ + A L + + V+ GA+P LV L
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 114/251 (45%), Gaps = 13/251 (5%)
Query: 455 NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNL 514
N+ E A L L+ H E + I G IP L+ +L S +A+T L NL
Sbjct: 67 NTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 125
Query: 515 SINDENKAMIAE-AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL----EEYKAKIGRSG 569
++ E M AG ++ ++ +L N + A L +L +E K I SG
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTN---VKFLAITTDCLQILAYGNQESKLIILASG 182
Query: 570 AVKALVDLLGSGTL-RGRKDAATALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVD 627
+ALV+++ + T + + L LS+ NK I++AG ++ L + L DPS +V
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242
Query: 628 KAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTL 687
+ L NLS + + EG + +LV+++ S AA IL L ++ K +
Sbjct: 243 NCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 300
Query: 688 VLQEGAVPPLV 698
V Q G + LV
Sbjct: 301 VCQVGGIEALV 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 431 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 489
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS--VLEEYKAKI 565
I GA PL +L S N G +AA LF +S ++YK ++
Sbjct: 490 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL 537
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 202 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 258
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 318
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 378
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 379 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 408
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 81 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 140
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 141 GLQKMVAL 148
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 74 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 133
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 134 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 193
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 194 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 251
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 252 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 299
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 419 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 477
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 478 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 514
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 130 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 189
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 190 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 246
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 247 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 306
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 307 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 366
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 367 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 396
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 69 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 128
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 129 GLQKMVAL 136
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 91 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 150
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 151 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 210
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 211 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 268
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 269 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 316
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 436 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 494
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 495 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 531
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 147 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 206
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 207 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 263
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 264 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 323
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 324 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 383
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 384 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 413
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 86 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 145
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 146 GLQKMVAL 153
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 91 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 150
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 151 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 210
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 211 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 268
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 269 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 316
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 436 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 494
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 495 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 531
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 147 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 206
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 207 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 263
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 264 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 323
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 324 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 383
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 384 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 413
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 86 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 145
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 146 GLQKMVAL 153
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 89 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 208
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 266
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 434 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 205 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 261
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 381
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 382 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 411
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 144 GLQKMVAL 151
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 12/231 (5%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 76 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 135
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL----EEYKAKIGRSGAVKALVDLLGSGTL-RGRKD 588
+ +L N + A L +L +E K I SG +ALV+++ + T +
Sbjct: 136 VALLNKTN---VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 192
Query: 589 AATALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIA 647
+ L LS+ NK I++AG ++ L + L DPS +V + L NLS + +
Sbjct: 193 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM- 251
Query: 648 REGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
EG + +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 252 -EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 301
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 421 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 479
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 480 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 516
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 132 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 191
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 192 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 248
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 249 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 308
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 309 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 368
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 369 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 398
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 71 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 130
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 131 GLQKMVAL 138
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 12/231 (5%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 74 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 133
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL----EEYKAKIGRSGAVKALVDLLGSGTL-RGRKD 588
+ +L N + A L +L +E K I SG +ALV+++ + T +
Sbjct: 134 VALLNKTN---VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 190
Query: 589 AATALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIA 647
+ L LS+ NK I++AG ++ L + L DPS +V + L NLS + +
Sbjct: 191 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM- 249
Query: 648 REGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
EG + +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 250 -EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 299
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 419 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 477
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 478 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 514
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 130 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 189
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 190 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 246
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 247 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 306
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 307 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 366
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 367 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 396
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 69 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 128
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 129 GLQKMVAL 136
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 87 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 146
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAAT 591
+ +L N + L L+ +E K I SG +ALV+++ + T + +
Sbjct: 147 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 206
Query: 592 ALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L LS+ NK I++AG ++ L + L DPS +V + L NLS + + EG
Sbjct: 207 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 264
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
+ +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 265 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 312
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 432 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 490
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 491 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 527
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 143 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 202
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 203 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 259
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 260 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 319
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 320 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 379
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 380 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 409
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 82 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 141
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 142 GLQKMVAL 149
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 12/231 (5%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 78 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 137
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL----EEYKAKIGRSGAVKALVDLLGSGTL-RGRKD 588
+ +L N + A L +L +E K I SG +ALV+++ + T +
Sbjct: 138 VALLNKTN---VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 194
Query: 589 AATALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLSTVGEGRLAIA 647
+ L LS+ NK I++AG ++ L + L DPS +V + L NLS + +
Sbjct: 195 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM- 253
Query: 648 REGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
EG + +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 254 -EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 303
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 423 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 481
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL +L S N G +AA LF +S
Sbjct: 482 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 518
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K++ LN T+ + A L++LA N E+++II G L++++ Y+ +L
Sbjct: 134 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 193
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 194 TTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 250
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 251 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 310
Query: 617 ---DLMDPST---------------------------------------GMVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 311 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 370
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 371 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 400
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 73 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 132
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 133 GLQKMVAL 140
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
IP Y +S ELM +P I SG TY+R I++ L + P TR L LIPN +
Sbjct: 10 IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 69
Query: 296 KAMIENWCEEN 306
K +I+ + +EN
Sbjct: 70 KEVIDAFIQEN 80
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
IP Y +S ELM +P I SG TY+R I++ L + P TR L LIPN +
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162
Query: 296 KAMIENWCEEN 306
K +I+ + +EN
Sbjct: 163 KEVIDAFIQEN 173
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
IP Y +S ELM +P I SG TY+R I++ L + P TR L LIPN +
Sbjct: 2 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 296 KAMIENWCEEN 306
K +I+ + EN
Sbjct: 62 KEVIDAFISEN 72
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
IP Y +S ELM +P I SG TY+R I++ L + P TR L LIPN +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264
Query: 296 KAMIENWCEEN 306
K +I+ + EN
Sbjct: 265 KEVIDAFISEN 275
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 18/234 (7%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPL 533
H+ E + I G IP L+ L S +A+T L NL ++ E K + AG ++
Sbjct: 31 HHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKX 90
Query: 534 IHVLKSGNGGAKENSAAALFSLSVL----EEYKAKIGRSGAVKALVDLLGSGTL-RGRKD 588
+ +L N + A L +L +E K I SG +ALV++ + T +
Sbjct: 91 VALLNKTN---VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWT 147
Query: 589 AATALFNLSIFHENKARIIQAGAVKHL-VDLMDPSTGMVDKAVALLANLS---TVGEGRL 644
+ L LS+ NK I++AG + L + L DPS +V + L NLS T EG
Sbjct: 148 TSRVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG-- 205
Query: 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
EG + +LV+++ S AA IL L ++ K V Q G + LV
Sbjct: 206 ---XEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALV 256
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ ++ NR++I IP + LLYS + Q A L L+ + E
Sbjct: 376 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 434
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALF 553
I GA PL +L S N G +AA LF
Sbjct: 435 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 468
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 105/270 (38%), Gaps = 55/270 (20%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQ 504
++K + LN T+ + A L++LA N E+++II G L+++ Y+ +L
Sbjct: 87 LQKXVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLW 146
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ L LS+ NK I EAG + L L + +N L +LS + +
Sbjct: 147 TTS-RVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 203
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLV------- 616
G G + LV LLGS + AA L NL+ ++NK + Q G ++ LV
Sbjct: 204 EGXEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAG 263
Query: 617 ---DLMDPSTG---------------------------------------MVDKAVALLA 634
D+ +P+ ++ V L+
Sbjct: 264 DREDITEPAICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 323
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
NL+ + +G IP LV+++ Q
Sbjct: 324 NLALCPANHAPLREQGAIPRLVQLLVRAHQ 353
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+ + S A + L L LH QEG
Sbjct: 26 LHNLSHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLH---------QEG 76
Query: 693 A 693
A
Sbjct: 77 A 77
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 98/178 (55%), Gaps = 13/178 (7%)
Query: 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAV 508
++++ LNS + SA +L +A E + + GA+P L+ LL S + + A+
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 509 TALLNLSI--NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-----EEY 561
AL N++ N++ +A+I +AGA+ L+ +L S N ++ AL++LS + E+
Sbjct: 76 WALSNIASGGNEQIQAVI-DAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQI 131
Query: 562 KAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQAGAVKHLVDL 618
+A I +GA+ ALV LL S + ++A AL N+ S +E K + +AGA++ L L
Sbjct: 132 QAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 568 SGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQAGAVKHLVDLMD-PSTGM 625
+GA+ ALV LL S + ++A AL N+ S +E +I AGA+ LV L+ P+ +
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 626 VDKAVALLANLSTVGEGRL-AIAREGGIPSLVEVVES 661
+ +A+ L+N+++ G ++ A+ G +P+LV+++ S
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 606 IIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEGRL-AIAREGGIPSLVEVVESGS 663
+I AGA+ LV L+ P+ ++ +A+ L+N+++ G ++ A+ G +P+LV+++ S +
Sbjct: 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109
Query: 664 QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
++ + A L + + V+ GA+P LV L
Sbjct: 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA 500
V + L++ L+S + +I A L +A E + + GA+P L+ LL S
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 501 QLTQEHAVTALLNL-SINDENKAMIAEAGAIEPL 533
+ + A+ AL N+ S +E K + EAGA+E L
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 15/179 (8%)
Query: 449 KLIEDLNSTSNEIQASAAAEL-RLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
++ + LNS + Q SA + ++L+ N + + +I + GA+P L+ LL S + + A
Sbjct: 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQILQEA 74
Query: 508 VTALLNLSI--NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-----EE 560
+ AL N++ N++ +A+I +AGA+ L+ +L S N ++ AL++LS + E+
Sbjct: 75 LWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQ 130
Query: 561 YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQAGAVKHLVDL 618
+A I +GA+ ALV LL S + ++A AL N+ S +E K + +AGA++ L L
Sbjct: 131 IQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 559 EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQAGAVKHLVD 617
E+ +A I +GA+ ALV LL S + ++A AL N+ S +E +I AGA+ LV
Sbjct: 45 EQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103
Query: 618 LMD-PSTGMVDKAVALLANLSTVGEGRL-AIAREGGIPSLVEVVES 661
L+ P+ ++ +A+ L+N+++ G ++ A+ G +P+LV+++ S
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 589 AATALFN--LSIFHENKARIIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEGRL- 644
+AT F+ LS +E +I AGA+ LV L+ P+ ++ +A+ L+N+++ G ++
Sbjct: 31 SATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
A+ G +P+LV+++ S +++ + A L + + V+ GA+P LV L
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA 500
V + L++ L+S + +I A L +A E + + GA+P L+ LL S
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 501 QLTQEHAVTALLNL-SINDENKAMIAEAGAIEPL 533
+ + A+ AL N+ S +E K + EAGA+E L
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 13/178 (7%)
Query: 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAV 508
++++ LNS + SA +L +A E + + GA+P L+ LL S + + A+
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 509 TALLNLSI--NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-----EEY 561
AL N++ N++ +A+I +AGA+ L+ +L S N ++ AL++LS + E+
Sbjct: 76 WALSNIASGGNEQIQAVI-DAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQI 131
Query: 562 KAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQAGAVKHLVDL 618
+A I +GA+ ALV LL S + ++A AL N+ S +E K + +AGA L L
Sbjct: 132 QAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 98/172 (56%), Gaps = 13/172 (7%)
Query: 517 NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-----EEYKAKIGRSGAV 571
N++ +A+I +AGA+ L+ +L S N ++ AL++LS + E+ +A I +GA+
Sbjct: 44 NEQIQAVI-DAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQIQAVI-DAGAL 98
Query: 572 KALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQAGAVKHLVDLMD-PSTGMVDKA 629
ALV LL S + ++A AL N+ S +E +I AGA+ LV L+ P+ ++ +A
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
Query: 630 VALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680
+ L+N+++ G E + A+ G P+L ++ S +++ ++ A L ++ H
Sbjct: 159 LWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQSH 210
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 606 IIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEGRL-AIAREGGIPSLVEVVESGS 663
+I AGA+ LV L+ P+ ++ +A+ L+N+++ G ++ A+ G +P+LV+++ S +
Sbjct: 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109
Query: 664 QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
++ + A L + + V+ GA+P LV L
Sbjct: 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
EI L +LA+ M NRM I IP + LLYS + Q A L L+ + E
Sbjct: 435 EIVEGCTGALHILARDPM-NRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKE 493
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
I GA PL+ +L S N G +AA LF +S
Sbjct: 494 AADAIDAEGASAPLMELLHSRNEGTATYAAAVLFRIS 530
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 14/281 (4%)
Query: 426 IISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN 485
I+++ SR + + V ++ + +TS+ A + H+ E + I
Sbjct: 42 IVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFK 101
Query: 486 CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPLIHVLKSGNGGA 544
G IP L+ +L S + +A+T L NL + E M A ++ ++ +L N
Sbjct: 102 SGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKF 161
Query: 545 KENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAATALFNLSIFHEN 602
+ L L+ +E K I +G +ALV ++ + + + + L LS+ N
Sbjct: 162 LAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSN 221
Query: 603 KARIIQAGAVKHLVD-LMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661
K I++AG ++ L L S +V + L NLS V ++ G+ S+++++ +
Sbjct: 222 KPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVA------TKQEGLESVLKILVN 275
Query: 662 GSQRGKEN----AASILLQLCLHSPKFCTLVLQEGAVPPLV 698
N A L L ++ K TLV Q V L+
Sbjct: 276 QLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALI 316
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 31/227 (13%)
Query: 507 AVTALLNLSIND-ENKAMIAEAGAIEPLIH-VLKSGN-GGAKENSAAALFSLSV----LE 559
A L NL+ N+ +NK ++ + +E LIH +L++G+ E + AL L+ E
Sbjct: 288 ATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEAE 347
Query: 560 EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALF-NLSIFHENKARIIQAGAVKHLVDL 618
+ + + + A+V LL A L NL++ N A + +A + LV L
Sbjct: 348 MAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQL 407
Query: 619 M----------------DPSTG------MVDKAVALLANLSTVGEGRLAIAREGGIPSLV 656
+ P T +V+ L L+ R+ I R IP V
Sbjct: 408 LVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFV 467
Query: 657 EVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS 703
+++ S + + AA +L +L + + EGA PL+ L S
Sbjct: 468 QLLYSSVENIQRVAAGVLCELA-QDKEAADAIDAEGASAPLMELLHS 513
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 6/286 (2%)
Query: 439 DEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D V V +L+E + E +Q AA L +A ++ + A+P + LLY
Sbjct: 38 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 97
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + +E A+ AL N++ + + + + + A+EP++ + S + L +L
Sbjct: 98 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 157
Query: 557 VLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKH 614
++ + S A+ L L+ S DA A+ LS E +I K
Sbjct: 158 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 217
Query: 615 LVDLMDPSTGMVDK-AVALLANLSTVGEGRLAIAREGGI-PSLVEVVESGSQRGKENAAS 672
LV+L+ + +V A+ + N+ T + + + G+ P+L ++ S + K+ A
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
+ + + + V+ +PPLV L + + K++A +S+
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQAG V LV+ M P ++ A AL S + +P ++++ +G
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
S KE A L + S + VLQ A+ P++GL S P A LS+
Sbjct: 100 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 156
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
K+L+E L+ S +Q A + + N ++ N G +P L LL S + ++ A
Sbjct: 216 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 275
Query: 508 VTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
+ N++ N E + +A I PL+ +L+ K+ + A+ + S + I
Sbjct: 276 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335
Query: 567 R----SGAVKALVDLL 578
R G +K L DLL
Sbjct: 336 RYLVSQGCIKPLCDLL 351
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 6/286 (2%)
Query: 439 DEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D V V +L+E + E +Q AA L +A ++ + A+P + LLY
Sbjct: 38 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 97
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + +E A+ AL N++ + + + + + A+EP++ + S + L +L
Sbjct: 98 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 157
Query: 557 VLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKH 614
++ + S A+ L L+ S DA A+ LS E +I K
Sbjct: 158 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 217
Query: 615 LVDLMDPSTGMVDK-AVALLANLSTVGEGRLAIAREGGI-PSLVEVVESGSQRGKENAAS 672
LV+L+ + +V A+ + N+ T + + + G+ P+L ++ S + K+ A
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
+ + + + V+ +PPLV L + + K++A +S+
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQAG V LV+ M P ++ A AL S + +P ++++ +G
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
S KE A L + S + VLQ A+ P++GL S P A LS+
Sbjct: 100 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 156
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
K+L+E L+ S +Q A + + N ++ N G +P L LL S + ++ A
Sbjct: 216 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 275
Query: 508 VTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
+ N++ N E + +A I PL+ +L+ K+ + A+ + S + I
Sbjct: 276 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335
Query: 567 R----SGAVKALVDLL 578
R G +K L DLL
Sbjct: 336 RYLVSQGCIKPLCDLL 351
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 6/286 (2%)
Query: 439 DEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D V V +L+E + E +Q AA L +A ++ + A+P + LLY
Sbjct: 37 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 96
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + +E A+ AL N++ + + + + + A+EP++ + S + L +L
Sbjct: 97 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 156
Query: 557 VLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKH 614
++ + S A+ L L+ S DA A+ LS E +I K
Sbjct: 157 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 216
Query: 615 LVDLMDPSTGMVDK-AVALLANLSTVGEGRLAIAREGGI-PSLVEVVESGSQRGKENAAS 672
LV+L+ + +V A+ + N+ T + + + G+ P+L ++ S + K+ A
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
+ + + + V+ +PPLV L + + K++A +S+
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQAG V LV+ M P ++ A AL S + +P ++++ +G
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
S KE A L + S + VLQ A+ P++GL S P A LS+
Sbjct: 99 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 155
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
K+L+E L+ S +Q A + + N ++ N G +P L LL S + ++ A
Sbjct: 215 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 274
Query: 508 VTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
+ N++ N E + +A I PL+ +L+ K+ + A+ + S + I
Sbjct: 275 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334
Query: 567 R----SGAVKALVDLL 578
R G +K L DLL
Sbjct: 335 RYLVSQGCIKPLCDLL 350
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 6/286 (2%)
Query: 439 DEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D V V +L+E + E +Q AA L +A ++ + A+P + LLY
Sbjct: 36 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 95
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + +E A+ AL N++ + + + + + A+EP++ + S + L +L
Sbjct: 96 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 155
Query: 557 VLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKH 614
++ + S A+ L L+ S DA A+ LS E +I K
Sbjct: 156 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 215
Query: 615 LVDLMDPSTGMVDK-AVALLANLSTVGEGRLAIAREGGI-PSLVEVVESGSQRGKENAAS 672
LV+L+ + +V A+ + N+ T + + + G+ P+L ++ S + K+ A
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 275
Query: 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
+ + + + V+ +PPLV L + + K++A +S+
Sbjct: 276 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQAG V LV+ M P ++ A AL S + +P ++++ +G
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
S KE A L + S + VLQ A+ P++GL S P A LS+
Sbjct: 98 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 154
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
K+L+E L+ S +Q A + + N ++ N G +P L LL S + ++ A
Sbjct: 214 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 273
Query: 508 VTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
+ N++ N E + +A I PL+ +L+ K+ + A+ + S + I
Sbjct: 274 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333
Query: 567 R----SGAVKALVDLL 578
R G +K L DLL
Sbjct: 334 RYLVSQGCIKPLCDLL 349
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 6/286 (2%)
Query: 439 DEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D V V +L+E + E +Q AA L +A ++ + A+P + LLY
Sbjct: 36 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 95
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + +E A+ AL N++ + + + + + A+EP++ + S + L +L
Sbjct: 96 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 155
Query: 557 VLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKH 614
++ + S A+ L L+ S DA A+ LS E +I K
Sbjct: 156 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 215
Query: 615 LVDLMDPSTGMVDK-AVALLANLSTVGEGRLAIAREGGI-PSLVEVVESGSQRGKENAAS 672
LV+L+ + +V A+ + N+ T + + + G+ P+L ++ S + K+ A
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 275
Query: 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
+ + + + V+ +PPLV L + + K++A +S+
Sbjct: 276 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQAG V LV+ M P ++ A AL S + +P ++++ +G
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
S KE A L + S + VLQ A+ P++GL S P A LS+
Sbjct: 98 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 154
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
K+L+E L+ S +Q A + + N ++ N G +P L LL S + ++ A
Sbjct: 214 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 273
Query: 508 VTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
+ N++ N E + +A I PL+ +L+ K+ + A+ + S + I
Sbjct: 274 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333
Query: 567 R----SGAVKALVDLL 578
R G +K L DLL
Sbjct: 334 RYLVSQGCIKPLCDLL 349
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 6/286 (2%)
Query: 439 DEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D V V +L+E + E +Q AA L +A ++ + A+P + LLY
Sbjct: 37 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 96
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + +E A+ AL N++ + + + + + A+EP++ + S + L +L
Sbjct: 97 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 156
Query: 557 VLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKH 614
++ + S A+ L L+ S DA A+ LS E +I K
Sbjct: 157 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 216
Query: 615 LVDLMDPSTGMVDK-AVALLANLSTVGEGRLAIAREGGI-PSLVEVVESGSQRGKENAAS 672
LV+L+ + +V A+ + N+ T + + + G+ P+L ++ S + K+ A
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
+ + + + V+ +PPLV L + + K++A +S+
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQAG V LV+ M P ++ A AL S + +P ++++ +G
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
S KE A L + S + VLQ A+ P++GL S P A LS+
Sbjct: 99 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 155
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
K+L+E L+ S +Q A + + N ++ N G +P L LL S + ++ A
Sbjct: 215 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 274
Query: 508 VTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
+ N++ N E + +A I PL+ +L+ K+ + A+ + S + I
Sbjct: 275 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334
Query: 567 R----SGAVKALVDLL 578
R G +K L DLL
Sbjct: 335 RYLVSQGCIKPLCDLL 350
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQAG V LV+ M P ++ A AL S + +P ++++ +G
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
S KE A L + S + VLQ A+ P++GL S P A LS+
Sbjct: 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 6/286 (2%)
Query: 439 DEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D V V +L+E + E +Q AA L +A ++ + A+P + LLY
Sbjct: 124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + +E A+ AL N++ + + + + + A+EP++ + S + L +L
Sbjct: 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243
Query: 557 VLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENKARIIQAGAVKH 614
++ + S A+ L L+ S DA A+ LS E +I K
Sbjct: 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303
Query: 615 LVDLMDPSTGMVDK-AVALLANLSTVGEGRLAIAREGGI-PSLVEVVESGSQRGKENAAS 672
LV+L+ + +V A+ + N+ T + + + G+ P+L ++ S + K+ A
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363
Query: 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
+ + + + V+ +PPLV L + + K++A +S+
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
K+L+E L+ S +Q A + + N ++ N G +P L LL S + ++ A
Sbjct: 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361
Query: 508 VTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
+ N++ N E + +A I PL+ +L+ K+ + A+ + S + I
Sbjct: 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421
Query: 567 R----SGAVKALVDLL 578
R G +K L DLL
Sbjct: 422 RYLVSQGCIKPLCDLL 437
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLN--ICPKTRQTLAHTNLIPNYT 294
P FR PL LM DPV + SG +R I L H LN P RQTL + L P
Sbjct: 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSII---LRHLLNSPTDPFNRQTLTESMLEPVPE 83
Query: 295 VKAMIENWCEE 305
+K I+ W E
Sbjct: 84 LKEQIQAWMRE 94
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 97/243 (39%), Gaps = 54/243 (22%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPP 491
AA+P R+D Y+K L +D S ++ +AA L IG+ A+ P
Sbjct: 10 AAAPLRADPEKVEMYIKNLQDD----SYYVRRAAAYALGK-----------IGDERAVEP 54
Query: 492 LLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAA 551
L+ L E + A AL I + A+EPLI LK +G ++++A A
Sbjct: 55 LIKALKDEDAWVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVA 104
Query: 552 LFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGA 611
L +IG AV+ L+ L R AA AL I A
Sbjct: 105 L----------GQIGDERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERA 144
Query: 612 VKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAA 671
V+ L+ + G V ++ A L +G R+ A E ++ E+G+ ++ A
Sbjct: 145 VEPLIKALKDEDGWVRQSAA--DALGEIGGERVRAAME-------KLAETGTGFARKVAV 195
Query: 672 SIL 674
+ L
Sbjct: 196 NYL 198
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEH--------AVTALLNLSIND-ENKAMIAE-AGAIEP 532
+G AI LL + LT +H A AL NL+ D NKA + G +
Sbjct: 74 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 133
Query: 533 LIHVLKSGNGGAKENSAAALFSLSVLEEYKAK--IGRSGAVKAL----VDLLGSGTLRGR 586
L+ LKS + ++ A+ L +LS + +K + G+VKAL +++ TL
Sbjct: 134 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL--- 190
Query: 587 KDAATALFNLSIF-HENKARIIQA-GAVKHLVDLMD-----PSTGMVDKAVALLANLSTV 639
K +AL+NLS ENKA I GA+ LV + + +++ +L N+S++
Sbjct: 191 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 250
Query: 640 ---GEGRLAIAREGG-IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695
E I RE + +L++ ++S S NA L L +PK + GAV
Sbjct: 251 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 310
Query: 696 PLVGLSQS 703
L L S
Sbjct: 311 MLKNLIHS 318
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEH--------AVTALLNLSIND-ENKA-MIAEAGAIEP 532
+G AI LL + LT +H A AL NL+ D NKA + + G
Sbjct: 81 LGGLQAIAELLQVDCEXYGLTNDHYSITLRRYAGXALTNLTFGDVANKATLCSXKGCXRA 140
Query: 533 LIHVLKSGNGGAKENSAAALFSLSVLEEYKAK--IGRSGAVKAL----VDLLGSGTLRGR 586
L+ LKS + ++ A+ L +LS + +K + G+VKAL +++ TL
Sbjct: 141 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALXECALEVKKESTL--- 197
Query: 587 KDAATALFNLSIF-HENKARIIQA-GAVKHLVDLMDPST-----GMVDKAVALLANLSTV 639
K +AL+NLS ENKA I GA+ LV + + +++ +L N+S++
Sbjct: 198 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 257
Query: 640 ---GEGRLAIAREGG-IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695
E I RE + +L++ ++S S NA L L +PK + GAV
Sbjct: 258 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVS 317
Query: 696 PLVGLSQS 703
L L S
Sbjct: 318 XLKNLIHS 325
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 32/249 (12%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEH--------AVTALLNLSIND-ENKAMIAE-AGAIEP 532
+G AI LL + LT +H A AL NL+ D NKA + G +
Sbjct: 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 131
Query: 533 LIHVLKSGNGGAKENSAAALFSLSVLEEYKAK--IGRSGAVKALVDLLGSGTLRGRKDAA 590
L+ LKS + ++ A+ L +LS + +K + G+VKAL++ L +K++
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC----ALEVKKEST 187
Query: 591 -----TALFNLSIF-HENKARIIQA-GAVKHLVDLMD-----PSTGMVDKAVALLANLST 638
+AL+NLS ENKA I GA+ LV + + +++ +L N+S+
Sbjct: 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247
Query: 639 V---GEGRLAIAREGG-IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694
+ E I RE + +L++ ++S S NA L L +PK + GAV
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307
Query: 695 PPLVGLSQS 703
L L S
Sbjct: 308 SMLKNLIHS 316
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEH--------AVTALLNLSIND-ENKAMIAE-AGAIEP 532
+G AI LL + LT +H A AL NL+ D NKA + G +
Sbjct: 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 247
Query: 533 LIHVLKSGNGGAKENSAAALFSLSVLEEYKAK--IGRSGAVKAL----VDLLGSGTLRGR 586
L+ LKS + ++ A+ L +LS + +K + G+VKAL +++ TL
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL--- 304
Query: 587 KDAATALFNLSIF-HENKARIIQA-GAVKHLVDLMD-----PSTGMVDKAVALLANLSTV 639
K +AL+NLS ENKA I GA+ LV + + +++ +L N+S++
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364
Query: 640 ---GEGRLAIAREGG-IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695
E I RE + +L++ ++S S NA L L +PK + GAV
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 424
Query: 696 PLVGLSQS 703
L L S
Sbjct: 425 MLKNLIHS 432
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEH--------AVTALLNLSIND-ENKA-MIAEAGAIEP 532
+G AI LL + LT +H A AL NL+ D NKA + + G
Sbjct: 72 LGGLQAIAELLQVDCEXYGLTNDHYSITLRRYAGXALTNLTFGDVANKATLCSXKGCXRA 131
Query: 533 LIHVLKSGNGGAKENSAAALFSLSVLEEYKAK--IGRSGAVKAL----VDLLGSGTLRGR 586
L+ LKS + ++ A+ L +LS + +K + G+VKAL +++ TL
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALXECALEVKKESTL--- 188
Query: 587 KDAATALFNLSIF-HENKARIIQA-GAVKHLVDLMD-----PSTGMVDKAVALLANLSTV 639
K +AL+NLS ENKA I GA+ LV + + +++ +L N+S++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248
Query: 640 ---GEGRLAIAREGG-IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695
E I RE + +L++ ++S S NA L L +PK + GAV
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVS 308
Query: 696 PLVGLSQS 703
L L S
Sbjct: 309 XLKNLIHS 316
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 32/249 (12%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEH--------AVTALLNLSIND-ENKAMIAE-AGAIEP 532
+G AI LL + LT +H A AL NL+ D NKA + G +
Sbjct: 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 131
Query: 533 LIHVLKSGNGGAKENSAAALFSLSVLEEYKAK--IGRSGAVKALVDLLGSGTLRGRKDAA 590
L+ LKS + ++ A+ L +LS + +K + G+VKAL++ L +K++
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC----ALEVKKEST 187
Query: 591 -----TALFNLSIF-HENKARIIQA-GAVKHLVDLMD-----PSTGMVDKAVALLANLST 638
+AL+NLS ENKA I GA+ LV + + +++ +L N+S+
Sbjct: 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247
Query: 639 V---GEGRLAIAREGG-IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694
+ E I RE + +L++ ++S S NA L L +PK + GAV
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307
Query: 695 PPLVGLSQS 703
L L S
Sbjct: 308 SMLKNLIHS 316
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 78 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 137
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 138 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 178
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 80 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 139
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 140 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 177
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 80 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 139
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 140 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 180
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 605 RIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 81 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 140
Query: 662 GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 141 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 179
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 605 RIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 154
Query: 662 GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 605 RIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 154
Query: 662 GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 50 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 109
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 110 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 150
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 605 RIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 51 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 110
Query: 662 GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 111 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 149
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 43 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 102
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 103 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 104
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 105 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 142
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 44 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 605 RIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 45 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 104
Query: 662 GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 105 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 70 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 129
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 130 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 170
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 72 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 131
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 132 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 169
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 39 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 98
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 99 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 100
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 101 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 138
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 43 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 102
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 103 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 104
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 105 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 142
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 39 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 98
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 99 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 100
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 101 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 138
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 44 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 106 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 44 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GAI+PL+ +L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 106 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 172
Query: 498 SEAQLTQEHAVTALLNLS-INDENKAMIAEAGAIEPLIHVL 537
S E AV AL N++ + ++ + GAI+PL+ +L
Sbjct: 173 SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL 213
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 174
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GA+ PL+ L
Sbjct: 175 HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 439 DEVTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T + IQ +A L +A E + + GAIP +SLL
Sbjct: 45 DNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 104
Query: 498 SEAQLTQEHAVTALLNLSINDE-NKAMIAEAGAIEPLIHVL 537
S E AV AL N++ + + ++ + GA++PL+ +L
Sbjct: 105 SPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALL 145
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 605 RIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661
II+AG + V + D S + A AL S E A+ G IP+ + ++ S
Sbjct: 46 NIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 105
Query: 662 GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
E A L + F LV++ GAV PL+ L
Sbjct: 106 PHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLAL 144
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQ+G V V + D + A AL S E + G +P V+++ S
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 172
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVG 699
S +E A L + SPK LVL GA+ PL+
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 209
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
+IQ+G V V + D + A AL S E + G +P V+++ S
Sbjct: 75 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 134
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV 698
S +E A L + SPK LVL GA+ PL+
Sbjct: 135 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLL 170
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 39/192 (20%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNG 542
IG+ A+ PL+ L E + A AL I + A+EPLI LK +G
Sbjct: 41 IGDERAVEPLIKALKDEDAWVRRAAADAL----------GQIGDERAVEPLIKALKDEDG 90
Query: 543 GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602
++++A AL +IG AV+ L+ L R AA AL
Sbjct: 91 WVRQSAAVAL----------GQIGDERAVEPLIKALKDEDWFVRIAAAFAL--------- 131
Query: 603 KARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662
I AV+ L+ + G V ++ A L +G R+ A E ++ E+G
Sbjct: 132 -GEIGDERAVEPLIKALKDEDGWVRQSAA--DALGEIGGERVRAAME-------KLAETG 181
Query: 663 SQRGKENAASIL 674
+ ++ A + L
Sbjct: 182 TGFARKVAVNYL 193
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 489 IPPLLSLL-YSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKEN 547
+P ++ L +++ + +EH L ++ ++ ++A G L + K+ + ++E
Sbjct: 458 LPEMIELAKFAKQHIPEEHE---LDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514
Query: 548 SAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598
A L ++ L+E + K+ + G VKAL+ + GT +G++ A AL + I
Sbjct: 515 IARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI 565
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 646 IAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT 705
+A EG +L + ++ S +E A +L +C + V+QEG V L+ ++ GT
Sbjct: 491 LANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGT 549
Query: 706 PRAKEKAQQLLSHF 719
+ K A Q L+
Sbjct: 550 EKGKRHATQALARI 563
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 242 CPLSLELMIDPVIVASGQTYERVFI-----QKWLDHGLNICPKTRQTLAHTNLIPNYTVK 296
CP+ LEL+ P+ + G ++ + + + LD G + CP R + N+ PN V
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81
Query: 297 AMIE 300
++E
Sbjct: 82 NIVE 85
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK-AMIAEAGAIEPLIHVLKSGNGGAKE 546
AIP L LL E Q+ A + LS + ++ A++ + ++ +++ N
Sbjct: 14 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 73
Query: 547 N-SAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN-KA 604
+A L +LS E I +SG + ALV +LGS A T L NL + E K
Sbjct: 74 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 133
Query: 605 RIIQAGAVKHLVDLMDPS 622
+ AG ++ +V L++ +
Sbjct: 134 AVRLAGGLQKMVALLNKT 151
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 80 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 139
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 140 GLQKMVAL 147
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 85 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 144
Query: 534 IHVLKSGN 541
+ +L N
Sbjct: 145 VALLNKTN 152
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK-AMIAEAGAIEPLIHVLKSGNGGAKE 546
AIP L LL E Q+ A + LS + ++ A++ + ++ +++ N
Sbjct: 14 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 73
Query: 547 N-SAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN-KA 604
+A L +LS E I +SG + ALV +LGS A T L NL + E K
Sbjct: 74 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 133
Query: 605 RIIQAGAVKHLVDLMDPS 622
+ AG ++ +V L++ +
Sbjct: 134 AVRLAGGLQKMVALLNKT 151
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
L NLS EG LAI + GGIP+LV+++ S A + L L LH V G
Sbjct: 80 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 139
Query: 693 AVPPLVGL 700
+ +V L
Sbjct: 140 GLQKMVAL 147
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533
H+ E + I G IP L+ +L S +A+T L NL ++ E M AG ++ +
Sbjct: 85 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 144
Query: 534 IHVLKSGN 541
+ +L N
Sbjct: 145 VALLNKTN 152
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 451 IEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQ----E 505
I DL + +E + +A+ LR LA + N+ +IG AIP L+ L Q + E
Sbjct: 360 IADLLTNEHERVVKAASGALRNLAV-DARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSE 417
Query: 506 HAVTALLN-----LSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE 560
V ++LN ++ N E + E IE L+ + KSGN KE AAAL L +
Sbjct: 418 DTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALV-LQTIWG 476
Query: 561 YK 562
YK
Sbjct: 477 YK 478
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 8/148 (5%)
Query: 406 SKELSRRCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDL---NSTSNEIQ 462
S ++ R + E+ E + + + SP+R E+ P V ++ L + T ++
Sbjct: 269 SYQVHREIPQAERYQEAAPNVANNT-GTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327
Query: 463 ASAAAELRLLAKHNMENRMI---IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519
ASA A L A R I + A+ + LL +E + + A AL NL+++
Sbjct: 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR 387
Query: 520 NKAMIAEAGAIEPLIHVLKSGNGGAKEN 547
NK +I + AI L+ L G + N
Sbjct: 388 NKELIGKH-AIPNLVKNLPGGQQNSSWN 414
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 283 TLAHTNLIPNYTVKAMIENWCEENNL-RLPSYSVHSNIVSVLSPLDHVSAQ 332
T+ H + + V++++E W ENN+ R+ SY H N+V ++ P D ++ +
Sbjct: 1587 TITH-GMYTSAAVRSLVETWAAENNIGRVRSY--HVNMVGMVLPNDAITVK 1634
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 414 SKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLA 473
S++EK + I S +V + KL++ L S + +Q +AA LR L
Sbjct: 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72
Query: 474 KHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALL-NLSINDENK-AMIAEA 527
+ N++ I +SLL + +T LL NLS DE K +IA+A
Sbjct: 73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADA 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,148,264
Number of Sequences: 62578
Number of extensions: 670325
Number of successful extensions: 2084
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 218
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)