Query 004761
Match_columns 732
No_of_seqs 459 out of 2786
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 12:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2E-26 4.3E-31 283.5 32.6 278 444-721 12-312 (2102)
2 PLN03200 cellulose synthase-in 99.9 6E-25 1.3E-29 270.6 33.7 284 440-724 441-767 (2102)
3 KOG0166 Karyopherin (importin) 99.9 2.8E-25 6E-30 242.0 24.2 281 441-721 105-393 (514)
4 KOG4224 Armadillo repeat prote 99.9 3E-24 6.5E-29 218.8 21.9 283 437-721 159-446 (550)
5 KOG4224 Armadillo repeat prote 99.9 7E-24 1.5E-28 216.1 20.2 282 440-722 121-406 (550)
6 KOG0166 Karyopherin (importin) 99.9 3.7E-22 8E-27 217.6 27.0 286 440-725 147-440 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 3E-23 6.5E-28 209.8 14.8 282 440-721 109-398 (526)
8 PF04564 U-box: U-box domain; 99.9 3.7E-23 8.1E-28 171.4 5.2 72 236-307 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.9 1E-20 2.2E-25 191.6 19.3 279 441-721 153-443 (526)
10 PF05804 KAP: Kinesin-associat 99.7 5.3E-16 1.2E-20 178.5 29.3 258 459-719 263-562 (708)
11 PF05804 KAP: Kinesin-associat 99.7 8.2E-16 1.8E-20 177.0 29.6 279 441-723 286-651 (708)
12 smart00504 Ubox Modified RING 99.7 1.9E-17 4.1E-22 133.8 5.4 63 239-302 1-63 (63)
13 KOG2122 Beta-catenin-binding p 99.7 9.1E-16 2E-20 177.9 18.3 265 461-726 313-606 (2195)
14 KOG1048 Neural adherens juncti 99.6 1.2E-14 2.6E-19 163.7 20.6 279 444-723 232-597 (717)
15 KOG4199 Uncharacterized conser 99.6 3.6E-13 7.7E-18 137.3 26.9 278 447-725 147-454 (461)
16 KOG4199 Uncharacterized conser 99.6 1.4E-12 3E-17 133.0 26.1 265 453-721 115-403 (461)
17 KOG1048 Neural adherens juncti 99.5 3.8E-13 8.2E-18 151.7 20.0 278 444-723 274-686 (717)
18 PF04826 Arm_2: Armadillo-like 99.5 3.2E-12 7E-17 131.6 23.0 191 444-639 11-206 (254)
19 PF04826 Arm_2: Armadillo-like 99.4 3.5E-11 7.6E-16 123.9 20.7 196 525-725 9-209 (254)
20 PF10508 Proteasom_PSMB: Prote 99.4 2.5E-10 5.3E-15 130.1 29.5 275 444-720 76-365 (503)
21 KOG2122 Beta-catenin-binding p 99.4 7.6E-12 1.6E-16 146.1 15.5 225 459-683 365-605 (2195)
22 KOG4642 Chaperone-dependent E3 99.3 4.5E-11 9.7E-16 117.4 14.5 77 232-308 204-280 (284)
23 COG5113 UFD2 Ubiquitin fusion 99.2 3.1E-11 6.7E-16 131.2 9.8 123 157-307 796-922 (929)
24 KOG2042 Ubiquitin fusion degra 99.2 5.1E-11 1.1E-15 138.2 8.9 72 235-307 866-938 (943)
25 cd00020 ARM Armadillo/beta-cat 99.1 2.3E-09 4.9E-14 97.3 14.4 116 483-598 3-120 (120)
26 PF15227 zf-C3HC4_4: zinc fing 99.1 7.9E-11 1.7E-15 86.1 3.2 39 242-280 1-42 (42)
27 cd00020 ARM Armadillo/beta-cat 99.1 3.7E-09 8E-14 96.0 15.0 116 605-720 2-119 (120)
28 PLN03208 E3 ubiquitin-protein 99.1 8E-11 1.7E-15 113.4 3.9 60 234-293 13-87 (193)
29 PF10508 Proteasom_PSMB: Prote 99.1 3.1E-08 6.7E-13 113.1 25.5 273 449-725 42-323 (503)
30 KOG1222 Kinesin associated pro 99.1 8.8E-09 1.9E-13 109.7 18.8 254 444-705 303-560 (791)
31 KOG4500 Rho/Rac GTPase guanine 99.0 2E-08 4.2E-13 106.1 20.6 279 444-723 86-433 (604)
32 cd00256 VATPase_H VATPase_H, r 99.0 6.6E-08 1.4E-12 106.0 24.9 273 447-719 103-423 (429)
33 KOG1222 Kinesin associated pro 99.0 1.2E-08 2.6E-13 108.7 16.1 196 501-699 277-474 (791)
34 TIGR00599 rad18 DNA repair pro 99.0 6.4E-10 1.4E-14 120.0 6.4 69 236-305 23-91 (397)
35 PRK09687 putative lyase; Provi 98.9 1.4E-07 3E-12 99.4 22.1 233 447-717 25-278 (280)
36 PF03224 V-ATPase_H_N: V-ATPas 98.9 1.6E-07 3.4E-12 101.0 21.8 219 449-668 62-303 (312)
37 KOG4500 Rho/Rac GTPase guanine 98.9 1.6E-07 3.5E-12 99.3 20.1 278 443-721 221-519 (604)
38 PF03224 V-ATPase_H_N: V-ATPas 98.9 1.5E-07 3.3E-12 101.1 20.0 228 488-715 56-308 (312)
39 PF11789 zf-Nse: Zinc-finger o 98.8 1.3E-09 2.7E-14 85.1 2.2 44 238-281 10-55 (57)
40 KOG0168 Putative ubiquitin fus 98.8 1.8E-07 3.8E-12 106.0 19.7 257 444-704 166-438 (1051)
41 PF13923 zf-C3HC4_2: Zinc fing 98.7 7.8E-09 1.7E-13 74.6 3.0 38 242-280 1-39 (39)
42 PRK09687 putative lyase; Provi 98.6 1.6E-06 3.5E-11 91.3 18.4 165 487-680 23-189 (280)
43 PF13445 zf-RING_UBOX: RING-ty 98.6 2.4E-08 5.1E-13 73.0 2.1 36 242-278 1-43 (43)
44 KOG0946 ER-Golgi vesicle-tethe 98.5 5.1E-05 1.1E-09 86.1 26.9 269 444-716 21-341 (970)
45 KOG2160 Armadillo/beta-catenin 98.5 2.4E-05 5.2E-10 82.4 22.9 228 456-684 94-334 (342)
46 PF00097 zf-C3HC4: Zinc finger 98.5 1.1E-07 2.5E-12 69.3 3.3 39 242-280 1-41 (41)
47 KOG2759 Vacuolar H+-ATPase V1 98.5 2E-05 4.4E-10 84.0 21.2 268 448-719 117-436 (442)
48 KOG2973 Uncharacterized conser 98.4 7.5E-05 1.6E-09 76.7 23.9 270 446-721 4-315 (353)
49 KOG0823 Predicted E3 ubiquitin 98.4 1.1E-07 2.3E-12 93.5 2.9 56 238-293 46-103 (230)
50 PRK13800 putative oxidoreducta 98.4 2.8E-05 6.1E-10 95.2 24.5 59 445-514 621-679 (897)
51 PRK13800 putative oxidoreducta 98.4 3E-05 6.5E-10 95.0 24.4 215 443-719 650-865 (897)
52 cd00256 VATPase_H VATPase_H, r 98.4 4.5E-05 9.8E-10 84.0 23.0 216 444-660 52-286 (429)
53 KOG2160 Armadillo/beta-catenin 98.4 2.1E-05 4.5E-10 82.9 19.4 181 541-721 96-283 (342)
54 PF14835 zf-RING_6: zf-RING of 98.4 1.2E-07 2.5E-12 74.1 1.7 58 239-299 7-65 (65)
55 PF13920 zf-C3HC4_3: Zinc fing 98.4 2.5E-07 5.4E-12 70.7 3.2 47 238-285 1-48 (50)
56 KOG0168 Putative ubiquitin fus 98.4 6.9E-06 1.5E-10 93.5 15.4 151 568-722 210-365 (1051)
57 PHA02929 N1R/p28-like protein; 98.4 3.3E-07 7.2E-12 92.6 4.3 49 236-285 171-227 (238)
58 KOG0287 Postreplication repair 98.3 2.1E-07 4.7E-12 94.9 2.7 65 238-303 22-86 (442)
59 PF01602 Adaptin_N: Adaptin N 98.3 5.6E-05 1.2E-09 87.3 22.4 251 446-720 80-332 (526)
60 PF01602 Adaptin_N: Adaptin N 98.3 7.9E-05 1.7E-09 86.0 22.7 253 444-720 113-368 (526)
61 KOG0320 Predicted E3 ubiquitin 98.3 4.2E-07 9.2E-12 85.4 2.4 53 238-291 130-184 (187)
62 KOG4646 Uncharacterized conser 98.2 1.1E-05 2.3E-10 73.1 10.9 133 487-619 16-150 (173)
63 KOG2177 Predicted E3 ubiquitin 98.2 7E-07 1.5E-11 95.6 3.9 70 236-308 10-79 (386)
64 cd00162 RING RING-finger (Real 98.2 1.6E-06 3.4E-11 64.1 3.8 44 241-284 1-45 (45)
65 PF13639 zf-RING_2: Ring finge 98.2 8.4E-07 1.8E-11 65.8 1.7 40 241-281 2-44 (44)
66 KOG4646 Uncharacterized conser 98.1 1.7E-05 3.6E-10 71.9 9.9 151 568-718 15-167 (173)
67 KOG1293 Proteins containing ar 98.1 0.00029 6.3E-09 79.0 21.4 248 457-704 389-655 (678)
68 COG5432 RAD18 RING-finger-cont 98.1 1.6E-06 3.5E-11 86.8 3.3 65 239-304 25-89 (391)
69 smart00184 RING Ring finger. E 98.1 3.7E-06 8E-11 59.9 3.4 39 242-280 1-39 (39)
70 KOG3678 SARM protein (with ste 98.0 0.00026 5.7E-09 76.0 18.0 260 442-722 177-453 (832)
71 PF05536 Neurochondrin: Neuroc 98.0 0.00034 7.4E-09 80.4 20.5 231 445-678 5-260 (543)
72 KOG0317 Predicted E3 ubiquitin 98.0 4.2E-06 9E-11 84.8 3.7 53 237-290 237-289 (293)
73 PF05536 Neurochondrin: Neuroc 98.0 0.00019 4.1E-09 82.5 17.0 188 529-719 6-211 (543)
74 PHA02926 zinc finger-like prot 98.0 8.9E-06 1.9E-10 79.5 5.1 55 236-292 167-235 (242)
75 KOG2171 Karyopherin (importin) 97.9 0.00073 1.6E-08 80.4 20.8 231 446-679 349-594 (1075)
76 KOG0946 ER-Golgi vesicle-tethe 97.9 0.0042 9.2E-08 71.1 25.8 246 446-691 62-358 (970)
77 KOG0978 E3 ubiquitin ligase in 97.9 0.00013 2.8E-09 83.6 13.9 54 238-291 642-695 (698)
78 TIGR00570 cdk7 CDK-activating 97.9 1.6E-05 3.5E-10 82.7 6.1 62 238-299 2-72 (309)
79 KOG1293 Proteins containing ar 97.9 0.0007 1.5E-08 76.1 18.7 171 520-690 369-544 (678)
80 KOG2171 Karyopherin (importin) 97.9 0.0039 8.6E-08 74.4 25.5 271 447-721 161-504 (1075)
81 KOG2023 Nuclear transport rece 97.9 0.00056 1.2E-08 76.6 17.3 276 442-723 125-465 (885)
82 PTZ00429 beta-adaptin; Provisi 97.8 0.0039 8.4E-08 74.0 25.4 256 445-720 68-325 (746)
83 KOG2759 Vacuolar H+-ATPase V1 97.8 0.0012 2.7E-08 70.7 19.0 230 449-679 160-438 (442)
84 KOG0311 Predicted E3 ubiquitin 97.8 3.2E-06 7E-11 87.5 -0.6 67 236-302 40-108 (381)
85 PF14634 zf-RING_5: zinc-RING 97.7 2.4E-05 5.2E-10 57.9 3.1 41 241-282 1-44 (44)
86 PTZ00429 beta-adaptin; Provisi 97.7 0.007 1.5E-07 71.9 25.1 260 446-719 141-431 (746)
87 PF00514 Arm: Armadillo/beta-c 97.7 7.1E-05 1.5E-09 54.5 4.9 40 476-515 1-40 (41)
88 PF14664 RICTOR_N: Rapamycin-i 97.7 0.012 2.7E-07 64.4 23.9 272 444-719 24-362 (371)
89 KOG2164 Predicted E3 ubiquitin 97.6 3.3E-05 7.2E-10 84.2 3.4 72 236-307 183-262 (513)
90 KOG3678 SARM protein (with ste 97.6 0.0011 2.4E-08 71.4 14.5 178 522-702 174-361 (832)
91 KOG2734 Uncharacterized conser 97.6 0.012 2.7E-07 63.4 21.7 236 465-702 104-371 (536)
92 TIGR02270 conserved hypothetic 97.6 0.007 1.5E-07 67.1 20.9 209 447-722 88-297 (410)
93 PF14664 RICTOR_N: Rapamycin-i 97.6 0.0062 1.3E-07 66.7 19.8 246 471-719 9-267 (371)
94 COG5574 PEX10 RING-finger-cont 97.5 4.6E-05 1E-09 76.4 2.3 51 238-288 214-265 (271)
95 KOG4159 Predicted E3 ubiquitin 97.5 7.6E-05 1.7E-09 81.1 3.9 72 233-305 78-154 (398)
96 COG5369 Uncharacterized conser 97.5 0.0014 2.9E-08 72.0 12.9 258 463-720 407-740 (743)
97 PF10165 Ric8: Guanine nucleot 97.4 0.023 4.9E-07 64.2 23.1 242 442-683 19-341 (446)
98 KOG0289 mRNA splicing factor [ 97.4 5.9E-05 1.3E-09 80.2 2.3 52 240-292 1-53 (506)
99 PF12678 zf-rbx1: RING-H2 zinc 97.4 0.00013 2.8E-09 60.4 3.8 44 236-281 17-73 (73)
100 KOG4413 26S proteasome regulat 97.4 0.017 3.8E-07 60.0 19.5 275 444-719 81-375 (524)
101 KOG2023 Nuclear transport rece 97.4 0.0043 9.3E-08 69.8 16.1 266 444-724 173-508 (885)
102 PF00514 Arm: Armadillo/beta-c 97.4 0.00037 8.1E-09 50.7 5.1 40 640-679 2-41 (41)
103 KOG0297 TNF receptor-associate 97.3 0.00014 3E-09 80.2 3.7 66 236-302 18-85 (391)
104 PF12348 CLASP_N: CLASP N term 97.3 0.0013 2.8E-08 67.2 10.4 184 538-725 17-210 (228)
105 KOG0212 Uncharacterized conser 97.3 0.0047 1E-07 68.3 14.8 232 445-683 208-449 (675)
106 COG5231 VMA13 Vacuolar H+-ATPa 97.3 0.012 2.6E-07 61.0 16.6 226 494-719 156-426 (432)
107 KOG2734 Uncharacterized conser 97.3 0.058 1.3E-06 58.4 22.2 237 444-680 124-401 (536)
108 COG5222 Uncharacterized conser 97.3 0.00028 6E-09 71.3 4.6 67 240-306 275-343 (427)
109 KOG2973 Uncharacterized conser 97.2 0.036 7.7E-07 57.6 19.0 224 445-673 44-309 (353)
110 PF10165 Ric8: Guanine nucleot 97.2 0.037 8E-07 62.4 20.7 257 466-723 2-339 (446)
111 KOG1789 Endocytosis protein RM 97.1 0.046 1E-06 64.4 20.7 253 448-704 1774-2142(2235)
112 KOG2660 Locus-specific chromos 97.1 0.00024 5.3E-09 73.6 2.5 65 236-301 12-81 (331)
113 PF05659 RPW8: Arabidopsis bro 97.1 0.0028 6E-08 59.9 9.4 96 18-115 20-115 (147)
114 KOG0212 Uncharacterized conser 97.1 0.013 2.8E-07 65.0 15.4 270 451-723 130-408 (675)
115 PF12348 CLASP_N: CLASP N term 97.1 0.0045 9.8E-08 63.2 11.6 181 454-639 16-207 (228)
116 KOG1789 Endocytosis protein RM 97.1 0.13 2.8E-06 61.0 23.4 135 587-723 1743-1885(2235)
117 PF13646 HEAT_2: HEAT repeats; 96.9 0.0031 6.6E-08 53.8 7.3 86 489-594 1-88 (88)
118 KOG1242 Protein containing ada 96.8 0.059 1.3E-06 60.9 18.2 262 446-717 135-440 (569)
119 KOG1517 Guanine nucleotide bin 96.8 0.065 1.4E-06 63.5 18.9 242 446-689 473-742 (1387)
120 PF11841 DUF3361: Domain of un 96.8 0.033 7.1E-07 53.0 13.7 120 564-683 6-135 (160)
121 COG1413 FOG: HEAT repeat [Ener 96.8 0.14 3.1E-06 55.4 20.8 183 445-676 43-239 (335)
122 PF13646 HEAT_2: HEAT repeats; 96.8 0.0072 1.6E-07 51.5 8.4 85 530-634 1-88 (88)
123 KOG4413 26S proteasome regulat 96.8 0.15 3.3E-06 53.2 19.0 244 456-700 182-460 (524)
124 smart00185 ARM Armadillo/beta- 96.8 0.0035 7.6E-08 45.1 5.3 38 478-515 3-40 (41)
125 COG5369 Uncharacterized conser 96.7 0.02 4.4E-07 63.1 12.6 196 506-701 408-617 (743)
126 PF12861 zf-Apc11: Anaphase-pr 96.7 0.0019 4.1E-08 54.2 3.6 49 237-285 30-82 (85)
127 KOG1813 Predicted E3 ubiquitin 96.7 0.001 2.2E-08 67.9 2.5 60 239-300 241-300 (313)
128 KOG0824 Predicted E3 ubiquitin 96.5 0.0011 2.4E-08 67.7 1.9 47 241-287 9-55 (324)
129 KOG1059 Vesicle coat complex A 96.5 0.18 3.9E-06 57.8 18.6 251 444-718 180-440 (877)
130 KOG1241 Karyopherin (importin) 96.4 0.19 4.1E-06 58.0 18.7 273 441-722 125-436 (859)
131 KOG2979 Protein involved in DN 96.4 0.0027 5.9E-08 63.8 3.6 64 238-301 175-244 (262)
132 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0025 5.4E-08 66.5 3.5 54 236-291 110-167 (260)
133 TIGR02270 conserved hypothetic 96.4 0.31 6.6E-06 54.3 20.0 150 445-636 54-205 (410)
134 KOG1002 Nucleotide excision re 96.4 0.0016 3.4E-08 70.9 1.8 54 238-291 535-592 (791)
135 KOG3036 Protein involved in ce 96.3 0.48 1E-05 47.9 18.8 178 501-679 93-291 (293)
136 smart00185 ARM Armadillo/beta- 96.3 0.01 2.2E-07 42.6 5.3 40 559-598 2-41 (41)
137 KOG0802 E3 ubiquitin ligase [P 96.2 0.0018 4E-08 74.8 1.5 47 237-284 289-340 (543)
138 PF04078 Rcd1: Cell differenti 96.2 0.42 9E-06 49.1 18.2 191 458-648 8-228 (262)
139 COG1413 FOG: HEAT repeat [Ener 96.2 0.21 4.5E-06 54.1 17.5 159 487-681 43-211 (335)
140 COG5240 SEC21 Vesicle coat com 96.2 0.39 8.5E-06 53.8 18.7 251 446-724 265-558 (898)
141 KOG4628 Predicted E3 ubiquitin 96.1 0.0036 7.8E-08 66.6 3.1 45 240-284 230-277 (348)
142 COG5152 Uncharacterized conser 96.1 0.0021 4.5E-08 61.5 1.1 45 239-284 196-240 (259)
143 KOG1824 TATA-binding protein-i 96.1 0.11 2.4E-06 61.0 14.7 235 441-683 43-290 (1233)
144 PF09759 Atx10homo_assoc: Spin 96.0 0.026 5.7E-07 49.6 7.5 66 626-691 3-71 (102)
145 KOG3039 Uncharacterized conser 96.0 0.005 1.1E-07 61.0 3.1 54 238-292 220-277 (303)
146 KOG1242 Protein containing ada 95.9 0.4 8.6E-06 54.4 17.8 217 446-679 217-444 (569)
147 KOG3036 Protein involved in ce 95.8 0.81 1.8E-05 46.3 17.4 178 543-721 94-291 (293)
148 KOG1062 Vesicle coat complex A 95.7 0.69 1.5E-05 53.9 19.1 253 444-704 141-453 (866)
149 KOG3039 Uncharacterized conser 95.7 0.0055 1.2E-07 60.8 2.0 37 236-272 40-76 (303)
150 PF04063 DUF383: Domain of unk 95.7 0.071 1.5E-06 52.8 9.7 120 583-702 9-157 (192)
151 KOG1517 Guanine nucleotide bin 95.6 0.44 9.5E-06 56.9 17.1 216 504-719 484-730 (1387)
152 KOG2259 Uncharacterized conser 95.5 0.11 2.3E-06 59.1 11.1 249 448-718 201-472 (823)
153 PF13513 HEAT_EZ: HEAT-like re 95.4 0.042 9.2E-07 42.4 5.9 55 542-596 1-55 (55)
154 KOG1241 Karyopherin (importin) 95.3 0.82 1.8E-05 53.0 17.7 267 447-721 174-477 (859)
155 PF09759 Atx10homo_assoc: Spin 95.3 0.08 1.7E-06 46.6 7.7 65 462-526 3-70 (102)
156 COG5243 HRD1 HRD ubiquitin lig 95.3 0.031 6.7E-07 58.7 5.9 48 237-285 285-345 (491)
157 KOG2879 Predicted E3 ubiquitin 95.3 0.014 2.9E-07 59.2 3.1 49 237-285 237-287 (298)
158 PF13764 E3_UbLigase_R4: E3 ub 95.2 2.1 4.5E-05 51.4 21.6 238 482-721 112-406 (802)
159 COG5540 RING-finger-containing 95.2 0.015 3.2E-07 59.6 3.1 47 240-286 324-373 (374)
160 KOG1062 Vesicle coat complex A 95.1 2.1 4.7E-05 50.0 20.1 247 458-724 247-547 (866)
161 KOG1248 Uncharacterized conser 95.0 1.2 2.7E-05 54.1 18.8 214 497-719 664-896 (1176)
162 KOG1061 Vesicle coat complex A 95.0 0.19 4.2E-06 58.2 11.7 242 445-705 49-293 (734)
163 KOG1061 Vesicle coat complex A 94.9 0.45 9.8E-06 55.3 14.4 169 444-619 120-289 (734)
164 COG5181 HSH155 U2 snRNP splice 94.8 0.48 1E-05 53.5 13.7 121 450-581 651-777 (975)
165 PF11841 DUF3361: Domain of un 94.7 0.43 9.4E-06 45.5 11.4 117 604-720 5-130 (160)
166 PF13513 HEAT_EZ: HEAT-like re 94.7 0.063 1.4E-06 41.5 5.0 55 501-555 1-55 (55)
167 COG5096 Vesicle coat complex, 94.7 1.2 2.7E-05 52.5 17.3 92 496-595 101-192 (757)
168 PF05004 IFRD: Interferon-rela 94.7 1.9 4.1E-05 46.3 17.7 181 538-722 53-258 (309)
169 COG5215 KAP95 Karyopherin (imp 94.7 3.6 7.8E-05 46.5 19.7 270 441-722 129-438 (858)
170 KOG4367 Predicted Zn-finger pr 94.6 0.012 2.7E-07 62.6 0.9 34 237-270 2-35 (699)
171 PF04063 DUF383: Domain of unk 94.6 0.26 5.7E-06 48.8 10.1 118 500-617 8-154 (192)
172 KOG0213 Splicing factor 3b, su 94.6 0.69 1.5E-05 53.4 14.3 224 491-720 803-1064(1172)
173 KOG2999 Regulator of Rac1, req 94.5 0.7 1.5E-05 51.7 14.0 153 530-682 85-245 (713)
174 KOG0826 Predicted E3 ubiquitin 94.4 0.016 3.4E-07 60.2 1.2 49 237-286 298-347 (357)
175 PF11698 V-ATPase_H_C: V-ATPas 94.4 0.095 2E-06 47.4 5.9 71 445-515 43-114 (119)
176 COG5181 HSH155 U2 snRNP splice 94.3 1 2.2E-05 51.0 14.8 150 444-598 603-759 (975)
177 COG5096 Vesicle coat complex, 94.3 0.88 1.9E-05 53.8 15.1 99 450-557 97-195 (757)
178 PF02891 zf-MIZ: MIZ/SP-RING z 94.3 0.044 9.6E-07 41.7 3.0 45 239-283 2-50 (50)
179 COG5231 VMA13 Vacuolar H+-ATPa 94.2 3.6 7.9E-05 43.3 17.4 220 458-679 162-428 (432)
180 KOG3113 Uncharacterized conser 94.1 0.038 8.2E-07 55.3 2.9 51 238-291 110-164 (293)
181 KOG1059 Vesicle coat complex A 94.0 1.4 3.1E-05 50.8 15.4 209 452-683 116-332 (877)
182 KOG2817 Predicted E3 ubiquitin 93.9 0.039 8.5E-07 59.1 2.8 43 239-281 334-381 (394)
183 KOG0213 Splicing factor 3b, su 93.8 0.95 2.1E-05 52.3 13.5 124 449-581 845-972 (1172)
184 KOG1077 Vesicle coat complex A 93.7 6.2 0.00014 45.7 19.4 242 452-709 153-421 (938)
185 KOG1645 RING-finger-containing 93.6 0.038 8.2E-07 59.0 2.1 62 239-300 4-71 (463)
186 KOG0804 Cytoplasmic Zn-finger 93.5 0.026 5.7E-07 60.9 0.8 44 239-285 175-222 (493)
187 PF08569 Mo25: Mo25-like; Int 93.5 2.1 4.6E-05 46.3 15.2 196 444-641 75-286 (335)
188 KOG1824 TATA-binding protein-i 93.4 1.4 3.1E-05 52.3 14.4 267 449-724 9-289 (1233)
189 PF14668 RICTOR_V: Rapamycin-i 93.4 0.39 8.4E-06 39.6 7.3 65 586-650 4-70 (73)
190 KOG0883 Cyclophilin type, U bo 93.4 0.051 1.1E-06 57.5 2.6 54 238-292 39-92 (518)
191 COG5215 KAP95 Karyopherin (imp 93.2 14 0.00031 41.9 20.8 227 493-725 100-361 (858)
192 KOG4151 Myosin assembly protei 92.9 3 6.4E-05 49.0 16.0 240 478-722 495-742 (748)
193 PF04078 Rcd1: Cell differenti 92.9 2.8 6.1E-05 43.2 14.1 146 462-608 67-228 (262)
194 KOG4151 Myosin assembly protei 92.8 1.2 2.5E-05 52.2 12.6 192 518-714 494-692 (748)
195 PF12755 Vac14_Fab1_bd: Vacuol 92.7 0.85 1.8E-05 40.0 8.9 68 569-637 27-95 (97)
196 PF12719 Cnd3: Nuclear condens 92.7 4.9 0.00011 42.8 16.6 185 488-679 27-233 (298)
197 KOG1078 Vesicle coat complex C 92.5 8.2 0.00018 45.4 18.5 257 445-721 245-532 (865)
198 PF05004 IFRD: Interferon-rela 92.4 9 0.0002 41.1 18.1 178 500-679 56-257 (309)
199 PF07814 WAPL: Wings apart-lik 92.3 5.2 0.00011 43.9 16.6 243 445-695 21-315 (361)
200 PF12755 Vac14_Fab1_bd: Vacuol 92.2 0.77 1.7E-05 40.2 8.0 67 651-720 28-96 (97)
201 PF12031 DUF3518: Domain of un 92.2 0.37 8E-06 48.7 6.7 120 542-662 80-228 (257)
202 KOG1248 Uncharacterized conser 92.0 10 0.00022 46.5 19.3 239 443-689 648-909 (1176)
203 KOG2259 Uncharacterized conser 92.0 1.7 3.7E-05 49.8 12.1 218 492-722 203-440 (823)
204 KOG1077 Vesicle coat complex A 91.9 31 0.00067 40.4 23.4 240 465-719 309-585 (938)
205 KOG2611 Neurochondrin/leucine- 91.8 4 8.6E-05 45.2 14.2 146 531-678 14-181 (698)
206 KOG2274 Predicted importin 9 [ 91.7 4.3 9.4E-05 48.2 15.3 216 497-720 460-688 (1005)
207 PF12717 Cnd1: non-SMC mitotic 91.7 9.1 0.0002 37.4 15.9 93 458-558 1-93 (178)
208 KOG2611 Neurochondrin/leucine- 91.6 14 0.0003 41.2 18.0 186 492-679 16-225 (698)
209 KOG2999 Regulator of Rac1, req 91.4 2.1 4.6E-05 48.1 11.9 151 571-721 85-242 (713)
210 KOG1785 Tyrosine kinase negati 91.3 0.089 1.9E-06 55.8 1.3 47 241-287 371-418 (563)
211 PF06371 Drf_GBD: Diaphanous G 91.1 1.1 2.4E-05 43.9 8.9 76 604-679 101-187 (187)
212 KOG1060 Vesicle coat complex A 90.9 13 0.00028 43.8 17.9 207 448-679 38-246 (968)
213 PF08045 CDC14: Cell division 90.9 2.3 5E-05 44.0 11.1 94 626-719 108-205 (257)
214 smart00744 RINGv The RING-vari 90.5 0.3 6.5E-06 37.0 3.2 41 241-281 1-49 (49)
215 PF14570 zf-RING_4: RING/Ubox 90.5 0.23 5E-06 37.1 2.5 43 242-284 1-47 (48)
216 PF08569 Mo25: Mo25-like; Int 90.5 13 0.00028 40.3 16.9 196 483-680 72-284 (335)
217 PF08045 CDC14: Cell division 90.3 2.8 6.1E-05 43.3 11.1 93 461-553 107-203 (257)
218 PF13764 E3_UbLigase_R4: E3 ub 89.9 53 0.0012 39.8 22.7 216 441-661 113-386 (802)
219 KOG0301 Phospholipase A2-activ 89.5 7.9 0.00017 44.6 14.6 164 451-619 550-725 (745)
220 KOG4692 Predicted E3 ubiquitin 89.5 0.5 1.1E-05 49.6 4.9 51 234-285 415-467 (489)
221 PF06025 DUF913: Domain of Unk 89.4 39 0.00084 37.4 22.5 92 528-619 106-205 (379)
222 COG5109 Uncharacterized conser 89.3 0.23 4.9E-06 51.4 2.2 43 239-281 336-383 (396)
223 COG5240 SEC21 Vesicle coat com 89.1 42 0.0009 38.4 19.3 105 447-558 225-333 (898)
224 KOG1060 Vesicle coat complex A 88.9 58 0.0012 38.7 21.6 170 453-637 151-349 (968)
225 KOG4653 Uncharacterized conser 88.7 11 0.00024 44.7 15.3 211 499-718 739-961 (982)
226 COG5627 MMS21 DNA repair prote 88.6 0.44 9.6E-06 47.3 3.5 57 239-295 189-249 (275)
227 PF11701 UNC45-central: Myosin 88.6 2.8 6.1E-05 40.2 9.1 142 530-675 5-155 (157)
228 PF06025 DUF913: Domain of Unk 88.6 18 0.00039 40.0 16.6 205 458-663 122-374 (379)
229 KOG1734 Predicted RING-contain 88.2 0.12 2.6E-06 52.3 -0.6 55 238-292 223-288 (328)
230 KOG1001 Helicase-like transcri 88.1 0.12 2.6E-06 60.7 -0.7 48 240-288 455-503 (674)
231 KOG1039 Predicted E3 ubiquitin 88.1 0.31 6.7E-06 52.4 2.4 49 237-285 159-221 (344)
232 KOG1788 Uncharacterized conser 87.9 14 0.0003 44.7 15.4 253 466-723 663-984 (2799)
233 KOG4653 Uncharacterized conser 87.9 26 0.00056 41.9 17.5 189 441-638 723-918 (982)
234 KOG4172 Predicted E3 ubiquitin 87.8 0.15 3.3E-06 38.6 -0.1 44 241-284 9-53 (62)
235 PF11793 FANCL_C: FANCL C-term 87.7 0.17 3.7E-06 41.4 0.1 47 239-285 2-66 (70)
236 PF11698 V-ATPase_H_C: V-ATPas 87.7 1.2 2.6E-05 40.4 5.4 69 651-719 44-113 (119)
237 KOG3800 Predicted E3 ubiquitin 87.6 0.37 8.1E-06 49.6 2.5 48 241-288 2-54 (300)
238 PF12719 Cnd3: Nuclear condens 87.5 12 0.00025 40.0 14.1 167 445-619 26-206 (298)
239 KOG0828 Predicted E3 ubiquitin 87.3 0.31 6.7E-06 53.4 1.8 33 254-286 603-635 (636)
240 PF14447 Prok-RING_4: Prokaryo 87.1 0.37 8.1E-06 36.9 1.6 46 240-288 8-53 (55)
241 PF06371 Drf_GBD: Diaphanous G 86.7 5.5 0.00012 38.9 10.4 110 445-556 66-186 (187)
242 KOG1240 Protein kinase contain 86.3 23 0.0005 43.8 16.4 95 459-557 437-537 (1431)
243 PF02985 HEAT: HEAT repeat; I 86.3 1.2 2.7E-05 29.9 3.7 29 570-598 1-29 (31)
244 PF05918 API5: Apoptosis inhib 85.7 32 0.00069 39.7 16.8 130 447-594 25-158 (556)
245 PF08324 PUL: PUL domain; Int 85.3 12 0.00025 39.1 12.5 180 491-670 67-265 (268)
246 PF12717 Cnd1: non-SMC mitotic 85.2 6.9 0.00015 38.2 10.0 92 500-599 1-93 (178)
247 KOG1058 Vesicle coat complex C 84.9 32 0.0007 40.5 16.0 146 534-698 323-486 (948)
248 COG5175 MOT2 Transcriptional r 84.7 0.57 1.2E-05 48.9 2.1 50 238-288 14-67 (480)
249 KOG0825 PHD Zn-finger protein 84.4 0.24 5.2E-06 57.0 -0.8 47 239-286 123-172 (1134)
250 KOG3161 Predicted E3 ubiquitin 84.0 0.54 1.2E-05 53.1 1.7 59 239-300 11-77 (861)
251 COG5194 APC11 Component of SCF 83.8 0.77 1.7E-05 37.8 2.1 43 241-284 33-80 (88)
252 KOG0915 Uncharacterized conser 83.7 16 0.00034 46.1 13.8 223 448-682 821-1071(1702)
253 KOG1943 Beta-tubulin folding c 83.6 1.1E+02 0.0024 37.7 20.3 241 444-707 340-597 (1133)
254 PF12460 MMS19_C: RNAPII trans 83.4 32 0.0007 38.5 15.7 185 446-640 190-396 (415)
255 COG5219 Uncharacterized conser 83.1 0.53 1.1E-05 55.4 1.2 46 240-285 1470-1523(1525)
256 PF14500 MMS19_N: Dos2-interac 82.8 58 0.0013 34.0 16.2 213 450-679 4-237 (262)
257 KOG1493 Anaphase-promoting com 82.2 0.53 1.1E-05 38.4 0.6 49 237-285 29-81 (84)
258 COG5209 RCD1 Uncharacterized p 82.0 20 0.00043 36.1 11.4 146 502-647 115-277 (315)
259 KOG0567 HEAT repeat-containing 81.9 55 0.0012 34.0 14.8 198 442-679 64-280 (289)
260 KOG2274 Predicted importin 9 [ 81.9 56 0.0012 39.4 16.7 223 456-684 461-694 (1005)
261 PF12031 DUF3518: Domain of un 81.6 4.2 9.1E-05 41.4 6.7 127 583-709 80-233 (257)
262 PF02985 HEAT: HEAT repeat; I 81.6 2.6 5.7E-05 28.3 3.8 28 489-516 2-29 (31)
263 PF11707 Npa1: Ribosome 60S bi 80.5 90 0.002 33.8 18.0 156 447-602 58-241 (330)
264 KOG1943 Beta-tubulin folding c 80.5 46 0.00099 40.8 15.7 148 568-719 340-498 (1133)
265 KOG0396 Uncharacterized conser 80.4 0.81 1.7E-05 48.8 1.3 49 239-287 330-381 (389)
266 KOG2062 26S proteasome regulat 80.4 79 0.0017 37.4 16.9 124 567-706 552-679 (929)
267 PF08324 PUL: PUL domain; Int 80.3 35 0.00075 35.6 13.7 135 581-715 122-268 (268)
268 KOG1788 Uncharacterized conser 80.1 84 0.0018 38.6 17.1 221 445-680 720-983 (2799)
269 PF14668 RICTOR_V: Rapamycin-i 79.9 11 0.00024 31.1 7.6 66 626-692 4-70 (73)
270 KOG1991 Nuclear transport rece 79.4 1.4E+02 0.0031 36.5 19.1 232 444-681 409-673 (1010)
271 KOG4535 HEAT and armadillo rep 79.3 5.3 0.00011 44.3 7.0 176 503-679 407-603 (728)
272 COG5209 RCD1 Uncharacterized p 78.9 23 0.0005 35.7 10.7 174 544-718 116-309 (315)
273 KOG3665 ZYG-1-like serine/thre 78.9 25 0.00054 42.1 13.2 194 510-719 494-695 (699)
274 KOG1566 Conserved protein Mo25 77.5 1E+02 0.0023 32.8 16.9 198 444-641 78-289 (342)
275 KOG4464 Signaling protein RIC- 77.4 80 0.0017 34.8 14.9 82 458-539 110-198 (532)
276 KOG0414 Chromosome condensatio 77.0 19 0.00041 44.3 11.3 140 446-598 920-1064(1251)
277 KOG1571 Predicted E3 ubiquitin 76.9 1.6 3.4E-05 46.7 2.2 47 234-284 300-346 (355)
278 PF12460 MMS19_C: RNAPII trans 76.8 34 0.00074 38.3 13.1 110 488-600 272-396 (415)
279 KOG2114 Vacuolar assembly/sort 76.5 14 0.0003 43.9 9.7 41 238-282 839-880 (933)
280 KOG0301 Phospholipase A2-activ 76.4 1.3E+02 0.0029 35.1 17.1 162 495-661 552-727 (745)
281 KOG0211 Protein phosphatase 2A 76.4 36 0.00078 40.9 13.4 181 448-636 239-425 (759)
282 PF04641 Rtf2: Rtf2 RING-finge 76.2 2.8 6.1E-05 43.8 3.9 36 238-273 33-69 (260)
283 KOG0827 Predicted E3 ubiquitin 76.1 1.7 3.8E-05 46.4 2.3 51 237-289 2-60 (465)
284 KOG2956 CLIP-associating prote 76.0 1.4E+02 0.0031 33.5 17.4 172 500-679 300-477 (516)
285 KOG1820 Microtubule-associated 75.8 54 0.0012 39.8 14.8 181 448-638 256-443 (815)
286 KOG1820 Microtubule-associated 75.3 41 0.00089 40.8 13.6 145 569-719 294-441 (815)
287 PF11701 UNC45-central: Myosin 75.3 21 0.00046 34.1 9.4 143 489-635 5-156 (157)
288 KOG0915 Uncharacterized conser 74.8 2.6E+02 0.0057 36.1 20.3 196 443-642 954-1164(1702)
289 KOG2933 Uncharacterized conser 73.9 24 0.00051 37.4 9.8 141 445-596 88-232 (334)
290 KOG2032 Uncharacterized conser 73.8 1.4E+02 0.0031 33.7 16.2 107 497-603 268-376 (533)
291 KOG1240 Protein kinase contain 73.7 1.2E+02 0.0026 38.0 16.6 223 445-679 462-725 (1431)
292 KOG4185 Predicted E3 ubiquitin 73.5 2.8 6.1E-05 44.6 3.2 52 251-302 21-77 (296)
293 KOG0211 Protein phosphatase 2A 73.4 66 0.0014 38.8 14.6 190 445-638 355-547 (759)
294 KOG3665 ZYG-1-like serine/thre 73.2 48 0.001 39.8 13.5 191 468-676 494-694 (699)
295 PF05918 API5: Apoptosis inhib 72.2 94 0.002 36.0 15.0 98 444-553 58-158 (556)
296 cd03569 VHS_Hrs_Vps27p VHS dom 70.8 17 0.00036 34.3 7.3 72 444-515 40-113 (142)
297 smart00531 TFIIE Transcription 70.4 23 0.0005 33.5 8.3 39 236-286 96-135 (147)
298 KOG4362 Transcriptional regula 70.1 1.8 4E-05 50.2 0.8 63 239-301 21-85 (684)
299 PF14666 RICTOR_M: Rapamycin-i 69.3 1.4E+02 0.003 30.5 14.5 127 583-719 78-223 (226)
300 KOG1058 Vesicle coat complex C 68.8 90 0.002 37.0 13.7 95 450-555 104-199 (948)
301 cd03561 VHS VHS domain family; 68.0 24 0.00052 32.7 7.7 73 444-516 36-112 (133)
302 cd03561 VHS VHS domain family; 67.8 23 0.0005 32.8 7.6 75 651-725 38-116 (133)
303 PF10272 Tmpp129: Putative tra 67.8 3.7 8E-05 44.5 2.5 37 252-288 301-354 (358)
304 KOG1967 DNA repair/transcripti 67.4 30 0.00066 41.6 9.8 145 487-632 867-1018(1030)
305 PF11865 DUF3385: Domain of un 67.1 44 0.00095 32.1 9.6 143 488-637 11-156 (160)
306 PF10363 DUF2435: Protein of u 66.4 14 0.00029 32.1 5.3 69 446-516 4-72 (92)
307 cd03568 VHS_STAM VHS domain fa 66.2 24 0.00051 33.3 7.3 74 651-724 38-113 (144)
308 KOG4265 Predicted E3 ubiquitin 65.6 3.7 8.1E-05 43.8 2.0 47 239-286 290-337 (349)
309 cd03569 VHS_Hrs_Vps27p VHS dom 65.4 23 0.0005 33.3 7.1 76 650-725 41-118 (142)
310 KOG2137 Protein kinase [Signal 65.3 40 0.00086 39.6 10.2 128 528-663 389-521 (700)
311 PF11707 Npa1: Ribosome 60S bi 64.5 2.1E+02 0.0046 30.9 19.0 153 489-641 58-240 (330)
312 cd03568 VHS_STAM VHS domain fa 64.0 25 0.00054 33.2 7.1 72 444-515 36-109 (144)
313 KOG2025 Chromosome condensatio 64.0 1.5E+02 0.0033 35.1 14.2 103 527-633 84-188 (892)
314 PF07814 WAPL: Wings apart-lik 63.1 2.4E+02 0.0051 31.0 16.8 91 489-579 23-116 (361)
315 PLN02189 cellulose synthase 62.9 5.8 0.00013 48.4 3.1 47 239-285 34-87 (1040)
316 KOG4535 HEAT and armadillo rep 62.6 14 0.0003 41.2 5.5 176 463-638 409-603 (728)
317 KOG2062 26S proteasome regulat 62.5 1.9E+02 0.0042 34.3 14.7 130 487-636 519-651 (929)
318 cd03567 VHS_GGA VHS domain fam 62.4 33 0.00071 32.2 7.4 72 444-515 37-115 (139)
319 PF05605 zf-Di19: Drought indu 61.7 21 0.00046 27.4 5.1 33 238-282 1-39 (54)
320 KOG2930 SCF ubiquitin ligase, 61.4 5.6 0.00012 34.6 1.9 27 256-283 80-106 (114)
321 PF06416 DUF1076: Protein of u 61.1 5.2 0.00011 35.4 1.7 57 232-289 32-95 (113)
322 PF05883 Baculo_RING: Baculovi 61.0 6.2 0.00013 36.4 2.3 52 239-291 26-86 (134)
323 PF14726 RTTN_N: Rotatin, an a 60.8 99 0.0022 27.1 9.6 67 608-674 28-95 (98)
324 KOG2956 CLIP-associating prote 59.9 3E+02 0.0065 31.1 17.6 186 444-638 285-477 (516)
325 PF08167 RIX1: rRNA processing 59.8 51 0.0011 31.8 8.6 107 529-637 26-142 (165)
326 PF10367 Vps39_2: Vacuolar sor 58.6 6.9 0.00015 34.5 2.2 37 231-267 70-108 (109)
327 KOG1967 DNA repair/transcripti 58.2 38 0.00083 40.8 8.5 146 445-593 867-1019(1030)
328 PF14726 RTTN_N: Rotatin, an a 58.1 70 0.0015 28.1 8.2 66 486-551 29-94 (98)
329 PLN02195 cellulose synthase A 57.7 7.7 0.00017 47.1 2.9 46 241-286 8-60 (977)
330 PF05290 Baculo_IE-1: Baculovi 57.7 31 0.00068 31.7 6.1 51 237-287 78-134 (140)
331 KOG0567 HEAT repeat-containing 57.6 2.5E+02 0.0053 29.4 17.1 194 486-720 66-279 (289)
332 cd03567 VHS_GGA VHS domain fam 57.5 42 0.00092 31.4 7.3 72 651-722 39-117 (139)
333 COG5116 RPN2 26S proteasome re 57.0 3.4E+02 0.0073 31.5 15.0 124 567-706 549-676 (926)
334 KOG0414 Chromosome condensatio 57.0 1.7E+02 0.0036 36.7 13.6 137 570-719 920-1062(1251)
335 smart00288 VHS Domain present 56.8 45 0.00098 30.9 7.4 72 444-515 36-110 (133)
336 PF08167 RIX1: rRNA processing 56.4 1.3E+02 0.0028 28.9 10.8 108 488-598 26-143 (165)
337 KOG2038 CAATT-binding transcri 55.8 3.8E+02 0.0083 32.2 15.6 102 569-679 304-409 (988)
338 KOG1814 Predicted E3 ubiquitin 55.7 12 0.00026 40.7 3.6 59 238-300 183-251 (445)
339 PLN02436 cellulose synthase A 53.9 10 0.00022 46.5 3.1 47 239-285 36-89 (1094)
340 PF07191 zinc-ribbons_6: zinc- 53.8 1.9 4.2E-05 35.0 -2.0 41 239-285 1-41 (70)
341 PF12530 DUF3730: Protein of u 53.8 2.6E+02 0.0056 28.5 19.2 136 448-597 3-150 (234)
342 KOG1940 Zn-finger protein [Gen 53.7 9.4 0.0002 39.8 2.4 43 239-282 158-204 (276)
343 KOG1243 Protein kinase [Genera 53.3 1E+02 0.0022 36.2 10.7 253 450-719 259-513 (690)
344 KOG0298 DEAD box-containing he 53.2 4.2 9E-05 50.2 -0.2 44 237-281 1151-1195(1394)
345 COG1675 TFA1 Transcription ini 53.0 50 0.0011 32.2 7.1 54 236-305 110-164 (176)
346 PF14225 MOR2-PAG1_C: Cell mor 52.7 2.9E+02 0.0064 28.8 15.3 178 443-638 62-254 (262)
347 PF12530 DUF3730: Protein of u 52.4 2.7E+02 0.0059 28.4 18.5 134 490-637 3-150 (234)
348 KOG1078 Vesicle coat complex C 51.7 5.1E+02 0.011 31.3 19.4 67 488-558 246-312 (865)
349 COG2176 PolC DNA polymerase II 51.4 13 0.00029 45.8 3.4 41 234-286 909-951 (1444)
350 KOG2032 Uncharacterized conser 51.2 1.1E+02 0.0024 34.5 10.2 259 444-720 257-530 (533)
351 cd03572 ENTH_epsin_related ENT 50.2 67 0.0014 29.4 7.1 72 651-722 39-120 (122)
352 KOG4275 Predicted E3 ubiquitin 50.1 4.1 8.9E-05 42.1 -0.8 39 239-284 300-341 (350)
353 KOG2137 Protein kinase [Signal 50.1 1.8E+02 0.0039 34.4 12.1 131 569-705 389-521 (700)
354 PF14353 CpXC: CpXC protein 49.8 10 0.00023 34.8 1.9 46 239-284 1-48 (128)
355 smart00288 VHS Domain present 49.5 69 0.0015 29.6 7.4 73 651-723 38-113 (133)
356 KOG2025 Chromosome condensatio 48.2 1.6E+02 0.0034 34.9 11.1 127 584-717 61-189 (892)
357 COG5098 Chromosome condensatio 48.1 79 0.0017 37.1 8.6 102 613-719 302-413 (1128)
358 PF10363 DUF2435: Protein of u 47.7 75 0.0016 27.5 6.7 72 530-602 5-76 (92)
359 COG5218 YCG1 Chromosome conden 47.7 1.1E+02 0.0023 35.4 9.5 124 487-617 91-229 (885)
360 smart00638 LPD_N Lipoprotein N 47.5 5.2E+02 0.011 30.1 17.4 177 488-683 312-513 (574)
361 PF00790 VHS: VHS domain; Int 47.5 46 0.00099 31.1 5.9 73 651-723 43-120 (140)
362 KOG4739 Uncharacterized protei 47.3 9.2 0.0002 38.8 1.2 40 250-292 15-55 (233)
363 PRK10869 recombination and rep 47.0 5.3E+02 0.011 30.1 21.0 145 31-196 177-336 (553)
364 KOG1991 Nuclear transport rece 46.9 6.5E+02 0.014 31.2 18.8 133 463-601 390-535 (1010)
365 COG5218 YCG1 Chromosome conden 46.6 5.4E+02 0.012 30.1 16.0 98 609-713 90-191 (885)
366 PLN02638 cellulose synthase A 46.3 14 0.00029 45.6 2.6 46 240-285 18-70 (1079)
367 KOG2933 Uncharacterized conser 46.1 1.5E+02 0.0034 31.5 9.8 129 536-676 96-231 (334)
368 cd00350 rubredoxin_like Rubred 45.7 16 0.00034 25.1 1.8 11 273-283 16-26 (33)
369 KOG1020 Sister chromatid cohes 45.0 3.1E+02 0.0067 35.5 13.5 141 487-636 816-958 (1692)
370 KOG3002 Zn finger protein [Gen 44.8 21 0.00046 37.9 3.5 59 236-301 45-104 (299)
371 TIGR00373 conserved hypothetic 44.8 35 0.00075 32.7 4.7 36 236-287 106-141 (158)
372 COG5116 RPN2 26S proteasome re 44.4 2.1E+02 0.0045 33.1 10.9 119 487-619 551-671 (926)
373 TIGR00634 recN DNA repair prot 44.0 5.9E+02 0.013 29.8 20.4 144 30-196 180-341 (563)
374 COG0497 RecN ATPase involved i 43.6 5.9E+02 0.013 29.7 19.7 146 30-196 176-337 (557)
375 PF12830 Nipped-B_C: Sister ch 42.8 3.1E+02 0.0067 26.9 11.3 115 570-689 9-132 (187)
376 PF14446 Prok-RING_1: Prokaryo 42.5 21 0.00045 27.6 2.2 32 239-273 5-40 (54)
377 PF00790 VHS: VHS domain; Int 42.0 59 0.0013 30.3 5.7 72 444-515 41-117 (140)
378 PLN02915 cellulose synthase A 42.0 17 0.00037 44.6 2.5 46 240-285 16-68 (1044)
379 PF11865 DUF3385: Domain of un 41.0 2.2E+02 0.0048 27.2 9.6 144 445-596 10-155 (160)
380 PHA02862 5L protein; Provision 39.9 21 0.00045 33.3 2.2 45 241-286 4-54 (156)
381 COG5656 SXM1 Importin, protein 39.1 7.7E+02 0.017 29.7 19.2 137 444-582 407-555 (970)
382 KOG0825 PHD Zn-finger protein 39.1 32 0.0007 40.5 3.9 57 234-305 91-159 (1134)
383 PF10521 DUF2454: Protein of u 38.9 2.3E+02 0.0051 29.8 10.3 70 569-638 119-203 (282)
384 COG1592 Rubrerythrin [Energy p 38.7 20 0.00044 34.5 2.0 25 239-283 134-158 (166)
385 PRK06266 transcription initiat 38.0 51 0.0011 32.3 4.8 56 236-307 114-170 (178)
386 PF14500 MMS19_N: Dos2-interac 37.8 4.9E+02 0.011 27.1 16.7 217 491-722 3-238 (262)
387 COG5220 TFB3 Cdk activating ki 37.6 11 0.00023 38.0 -0.1 47 238-284 9-63 (314)
388 PHA02825 LAP/PHD finger-like p 37.4 36 0.00079 32.4 3.4 48 238-286 7-60 (162)
389 PLN03205 ATR interacting prote 37.3 3.9E+02 0.0084 29.5 11.3 156 444-600 322-518 (652)
390 KOG0314 Predicted E3 ubiquitin 37.1 17 0.00037 40.5 1.3 67 234-302 214-284 (448)
391 PF01347 Vitellogenin_N: Lipop 36.6 4.5E+02 0.0097 30.9 13.4 138 529-683 396-557 (618)
392 PRK11088 rrmA 23S rRNA methylt 36.5 18 0.00039 37.9 1.4 27 239-265 2-31 (272)
393 PF10521 DUF2454: Protein of u 36.0 3.3E+02 0.0072 28.6 10.9 72 444-515 118-202 (282)
394 KOG4718 Non-SMC (structural ma 35.9 23 0.00049 35.1 1.9 45 240-285 182-227 (235)
395 KOG1243 Protein kinase [Genera 35.7 1.3E+02 0.0027 35.5 8.0 181 444-634 329-511 (690)
396 PF06012 DUF908: Domain of Unk 35.3 1.8E+02 0.004 31.4 9.0 74 585-658 238-324 (329)
397 PF14569 zf-UDP: Zinc-binding 35.2 32 0.00069 28.5 2.3 47 240-286 10-63 (80)
398 PF14631 FancD2: Fanconi anaem 34.9 1.2E+03 0.026 30.8 17.4 147 527-679 430-587 (1426)
399 smart00638 LPD_N Lipoprotein N 34.8 7.9E+02 0.017 28.6 17.1 202 447-676 313-542 (574)
400 PF14225 MOR2-PAG1_C: Cell mor 34.5 5.6E+02 0.012 26.8 19.8 214 448-678 10-253 (262)
401 PF01347 Vitellogenin_N: Lipop 34.1 3.4E+02 0.0074 31.9 11.8 74 529-619 487-567 (618)
402 cd08050 TAF6 TATA Binding Prot 34.0 2.6E+02 0.0056 30.5 9.9 140 447-596 180-338 (343)
403 cd00730 rubredoxin Rubredoxin; 33.5 20 0.00042 27.3 0.8 13 235-247 30-42 (50)
404 COG5242 TFB4 RNA polymerase II 33.4 20 0.00043 35.8 1.0 26 239-285 260-285 (296)
405 cd08324 CARD_NOD1_CARD4 Caspas 32.7 2.5E+02 0.0055 23.8 7.2 56 30-86 3-61 (85)
406 PF12252 SidE: Dot/Icm substra 32.5 1.1E+03 0.024 29.6 18.7 176 8-207 938-1159(1439)
407 KOG0392 SNF2 family DNA-depend 32.1 9.8E+02 0.021 30.7 14.7 229 444-680 76-326 (1549)
408 PF11864 DUF3384: Domain of un 31.7 8.1E+02 0.018 27.8 18.2 245 447-708 29-317 (464)
409 cd08329 CARD_BIRC2_BIRC3 Caspa 31.5 1.1E+02 0.0023 26.6 5.2 61 28-89 9-69 (94)
410 PF06012 DUF908: Domain of Unk 31.4 2.2E+02 0.0048 30.7 8.9 75 543-617 237-323 (329)
411 KOG1812 Predicted E3 ubiquitin 31.4 44 0.00096 37.0 3.5 70 239-309 146-229 (384)
412 COG5098 Chromosome condensatio 31.3 2E+02 0.0043 34.0 8.5 105 571-680 301-416 (1128)
413 TIGR03847 conserved hypothetic 31.1 47 0.001 32.1 3.1 29 263-291 142-174 (177)
414 PF06676 DUF1178: Protein of u 30.9 22 0.00049 33.6 0.9 23 256-283 9-41 (148)
415 COG3813 Uncharacterized protei 30.7 51 0.0011 26.8 2.7 39 254-295 24-62 (84)
416 cd08330 CARD_ASC_NALP1 Caspase 30.3 2.3E+02 0.005 23.8 6.9 57 29-86 2-58 (82)
417 KOG1020 Sister chromatid cohes 30.2 8.2E+02 0.018 32.0 13.9 104 529-639 817-922 (1692)
418 PF08506 Cse1: Cse1; InterPro 30.1 7.8E+02 0.017 27.1 16.3 142 569-716 210-370 (370)
419 PF00301 Rubredoxin: Rubredoxi 29.8 23 0.00049 26.6 0.6 13 235-247 30-42 (47)
420 KOG4464 Signaling protein RIC- 29.3 8.4E+02 0.018 27.2 15.5 187 526-721 11-228 (532)
421 PRK14707 hypothetical protein; 29.2 1.7E+03 0.036 30.7 21.5 232 446-679 374-613 (2710)
422 PF13251 DUF4042: Domain of un 28.8 5.7E+02 0.012 25.1 11.2 107 531-640 43-176 (182)
423 KOG3899 Uncharacterized conser 28.8 27 0.00058 36.2 1.1 28 260-287 328-367 (381)
424 PLN02400 cellulose synthase 28.8 33 0.00073 42.4 2.1 47 239-285 36-89 (1085)
425 PF04499 SAPS: SIT4 phosphatas 28.8 3.8E+02 0.0083 30.6 10.5 111 609-722 20-150 (475)
426 KOG1941 Acetylcholine receptor 28.8 8.2E+02 0.018 26.9 13.5 44 238-281 364-412 (518)
427 cd00197 VHS_ENTH_ANTH VHS, ENT 28.7 2.6E+02 0.0056 24.8 7.5 70 651-720 38-114 (115)
428 cd08325 CARD_CASP1-like Caspas 28.7 1.5E+02 0.0032 25.1 5.5 59 30-89 2-63 (83)
429 PF01726 LexA_DNA_bind: LexA D 28.5 67 0.0015 25.8 3.2 26 166-191 27-52 (65)
430 TIGR01206 lysW lysine biosynth 28.2 29 0.00063 26.8 1.0 33 239-286 2-34 (54)
431 PF12906 RINGv: RING-variant d 27.9 50 0.0011 24.6 2.2 29 252-280 13-47 (47)
432 PF11290 DUF3090: Protein of u 27.9 51 0.0011 31.8 2.7 17 271-287 151-167 (171)
433 cd00729 rubredoxin_SM Rubredox 27.9 31 0.00068 23.8 1.0 9 275-283 19-27 (34)
434 KOG0883 Cyclophilin type, U bo 27.9 31 0.00066 37.3 1.4 52 237-288 99-155 (518)
435 PF04423 Rad50_zn_hook: Rad50 26.0 19 0.00042 27.6 -0.4 12 275-286 21-32 (54)
436 cd08050 TAF6 TATA Binding Prot 26.0 4.2E+02 0.0091 28.8 9.8 109 570-678 211-339 (343)
437 PF06844 DUF1244: Protein of u 25.5 38 0.00083 27.1 1.2 13 260-272 11-23 (68)
438 cd03565 VHS_Tom1 VHS domain fa 25.5 3.8E+02 0.0082 25.1 8.2 75 651-725 39-119 (141)
439 PF11791 Aconitase_B_N: Aconit 25.3 81 0.0018 29.9 3.5 42 652-703 96-137 (154)
440 PF08216 CTNNBL: Catenin-beta- 25.0 74 0.0016 28.4 3.0 44 464-508 65-108 (108)
441 PRK07758 hypothetical protein; 24.8 48 0.001 28.7 1.8 33 257-296 12-45 (95)
442 KOG2549 Transcription initiati 24.0 1.2E+03 0.025 27.1 12.7 98 582-679 260-370 (576)
443 PF09889 DUF2116: Uncharacteri 23.9 49 0.0011 26.1 1.5 15 273-287 2-16 (59)
444 COG5656 SXM1 Importin, protein 23.8 5E+02 0.011 31.2 10.0 112 568-681 407-530 (970)
445 PRK14892 putative transcriptio 23.8 50 0.0011 29.0 1.7 38 234-285 16-53 (99)
446 PRK14707 hypothetical protein; 23.4 2.1E+03 0.045 29.9 20.5 266 446-716 206-483 (2710)
447 PF03854 zf-P11: P-11 zinc fin 23.3 35 0.00077 25.5 0.6 32 254-286 16-47 (50)
448 PRK12495 hypothetical protein; 22.9 77 0.0017 31.9 3.0 14 236-249 39-52 (226)
449 KOG2462 C2H2-type Zn-finger pr 22.8 47 0.001 34.5 1.6 52 236-287 158-228 (279)
450 KOG2312 Predicted transcriptio 22.6 11 0.00023 43.7 -3.3 149 552-702 17-171 (847)
451 PF10274 ParcG: Parkin co-regu 22.4 7.6E+02 0.016 24.3 9.9 73 444-516 37-109 (183)
452 cd01413 SIR2_Af2 SIR2_Af2: Arc 22.3 1.4E+02 0.0031 30.2 5.0 43 257-299 119-166 (222)
453 KOG1949 Uncharacterized conser 22.2 9.1E+02 0.02 28.9 11.5 58 533-591 179-242 (1005)
454 KOG2487 RNA polymerase II tran 22.1 34 0.00073 35.3 0.4 35 238-293 272-308 (314)
455 smart00834 CxxC_CXXC_SSSS Puta 21.8 60 0.0013 22.9 1.6 33 238-284 4-36 (41)
456 cd00197 VHS_ENTH_ANTH VHS, ENT 21.7 4.7E+02 0.01 23.1 7.9 70 445-514 37-113 (115)
457 KOG3842 Adaptor protein Pellin 21.6 86 0.0019 33.0 3.2 51 236-286 338-415 (429)
458 PF12231 Rif1_N: Rap1-interact 21.5 8.4E+02 0.018 26.8 11.3 173 498-678 4-203 (372)
459 PRK00420 hypothetical protein; 21.5 57 0.0012 29.4 1.6 13 273-285 39-51 (112)
460 PF09845 DUF2072: Zn-ribbon co 21.3 49 0.0011 30.5 1.2 24 255-283 5-28 (131)
461 KOG4713 Cyclin-dependent kinas 21.1 1.1E+02 0.0025 29.4 3.6 43 43-85 139-181 (189)
462 PF07539 DRIM: Down-regulated 21.0 6.6E+02 0.014 23.5 8.8 35 562-596 10-44 (141)
463 COG4530 Uncharacterized protei 20.8 72 0.0016 28.2 2.1 29 239-267 9-42 (129)
464 PF02146 SIR2: Sir2 family; I 20.7 1.4E+02 0.003 28.9 4.5 49 256-306 110-164 (178)
465 COG1885 Uncharacterized protei 20.6 33 0.00071 30.0 -0.0 21 273-293 48-68 (115)
466 PF12231 Rif1_N: Rap1-interact 20.6 1.1E+03 0.025 25.7 12.8 133 582-720 59-203 (372)
467 PF12830 Nipped-B_C: Sister ch 20.4 2.6E+02 0.0057 27.4 6.4 63 652-722 10-75 (187)
468 PF07165 DUF1397: Protein of u 20.4 6E+02 0.013 25.6 9.0 82 28-116 68-150 (213)
469 PF14663 RasGEF_N_2: Rapamycin 20.3 2.1E+02 0.0045 25.8 5.1 53 488-542 9-61 (115)
470 PRK11595 DNA utilization prote 20.2 1.6E+02 0.0035 29.9 4.9 61 241-307 7-86 (227)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=2e-26 Score=283.54 Aligned_cols=278 Identities=26% Similarity=0.308 Sum_probs=250.2
Q ss_pred CchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 444 TPYVKKLIEDLNST--SNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
...+.++|+.|+++ +++.+..|+..|+.+++.++++|..+++ .|+||.|+.+|++++..++++|+.+|.||+.++++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 55689999999977 7889999999999999999999999996 79999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC---chhHHHHH-hcchHHHHHHhhcCCCH---HHHHHHHHHH
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL---EEYKAKIG-RSGAVKALVDLLGSGTL---RGRKDAATAL 593 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~-~~g~i~~Lv~lL~~~~~---~~~~~Al~aL 593 (732)
+..++..|++++|+.+|++|+.+++++|+++|++|+.. ++++..|+ ..|++|+|++++++++. ..+..|+.+|
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 44565555 57999999999998752 3456778999
Q ss_pred HHhccCchhHH-HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcC-CHHHHHH
Q 004761 594 FNLSIFHENKA-RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESG-SQRGKEN 669 (732)
Q Consensus 594 ~nLs~~~~n~~-~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~-s~~~~e~ 669 (732)
+|||.+++++. .++++|+|+.|+.+| ++++.+++.|+.+|.+++.+ ++++..+++.|+|+.|+++|+++ ++..+++
T Consensus 172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred HHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence 99999999886 468999999999999 77889999999999988865 67899999999999999999875 5689999
Q ss_pred HHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC---------hHHHHHHHHHHHHhhc
Q 004761 670 AASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT---------PRAKEKAQQLLSHFRN 721 (732)
Q Consensus 670 A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~---------~~~k~kA~~lL~~l~~ 721 (732)
|+++|.+||.++++++..+++.|+++.|+.++.+.+ ...++.|.++|.++..
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998644 3358999999999865
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=6e-25 Score=270.56 Aligned_cols=284 Identities=25% Similarity=0.325 Sum_probs=250.7
Q ss_pred ccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc
Q 004761 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
.....+.++.|+++|++++...|..|++.|+++++.+.+++..+.++|+||+|+++|++++.+++++|+++|.|++.++.
T Consensus 441 aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 441 ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH
Confidence 35567789999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH------------------------------------
Q 004761 520 NKAM-IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK------------------------------------ 562 (732)
Q Consensus 520 ~k~~-i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k------------------------------------ 562 (732)
+... +.+.|++++|+++|++++.+.+.+|+++|++|+...++.
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 6555 447899999999999999999999999999996322110
Q ss_pred -HH-HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 563 -AK-IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 563 -~~-i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
.. ....|+++.|+++|++++...++.|+++|.|++.++ +++..++..|+|++|+.+| +.+..+...++++|.||..
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 00 112489999999999999999999999999999855 5678899999999999999 7778899999999999985
Q ss_pred C--hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHH
Q 004761 639 V--GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716 (732)
Q Consensus 639 ~--~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 716 (732)
+ .+.+..+++.|+++.|++++.+.+...++.|+.+|.+++. +++....+.++|+++.|+.++++|+++.|+.|.++|
T Consensus 681 ~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 681 SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 3 3455678899999999999999999999999999999999 566778888999999999999999999999999998
Q ss_pred HHhhcccc
Q 004761 717 SHFRNQRE 724 (732)
Q Consensus 717 ~~l~~~~~ 724 (732)
..|.+.++
T Consensus 760 ~~L~~~~~ 767 (2102)
T PLN03200 760 AQLLKHFP 767 (2102)
T ss_pred HHHHhCCC
Confidence 88876655
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.8e-25 Score=241.95 Aligned_cols=281 Identities=24% Similarity=0.298 Sum_probs=249.6
Q ss_pred cccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-
Q 004761 441 VTTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND- 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~- 518 (732)
....|.|+.+|++|.. .++..+.+|+++|.+++.++.+.-..++++|++|.++.++.+++..++++|+++|+|++.+.
T Consensus 105 vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 105 VIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP 184 (514)
T ss_pred HHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh
Confidence 4446889999999974 55899999999999999999999999999999999999999999999999999999999984
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhccCchhHHHHH-hcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
..|..+...|++++|+.++...+. ....+++|+|.||+...+....+. ...++|.|..++.+.++.+..+|++||.+|
T Consensus 185 ~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 185 DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 568889999999999999988764 688899999999998664333333 337899999999999999999999999999
Q ss_pred ccCch-hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHHHh-cCCHHHHHHHHH
Q 004761 597 SIFHE-NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEVVE-SGSQRGKENAAS 672 (732)
Q Consensus 597 s~~~~-n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~ 672 (732)
+.++. .-..++++|+++.|+++| ..+..++..|+.++.|++.+.+.+ +.+++.|+++.|..++. +.....+..|+|
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 97654 556778899999999999 777788899999999998877654 67789999999999998 455558899999
Q ss_pred HHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 673 ~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++.|++.+++++.+.+++.|++|.|+.+++++.-+.|+.|++++.++..
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999998754
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-24 Score=218.75 Aligned_cols=283 Identities=24% Similarity=0.329 Sum_probs=257.7
Q ss_pred CccccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 437 RSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 437 ~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
+....+..|.+..+.++-++.+..+|+.++.+|-+++ ++.+||..++.+|++|.|+.++++.|..+|+.+++++.|++.
T Consensus 159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence 3334556777888889778888899999999999998 567999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 517 NDENKAMIAEAG--AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 517 ~~~~k~~i~~~g--~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
+..+|+.+++.+ .++.|+.++.++++.++..|.-+|.+|+...++...|.+.|.+|.++++|++.........+.++.
T Consensus 238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 238 DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 999999999877 999999999999999999999999999999999999999999999999999888788888899999
Q ss_pred HhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Q 004761 595 NLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 595 nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|++.++.|-.-++++|.+.+|+++| ..+..++-.|..+|+||+. ....+..|.+.|+|+.+.+++..++-..++.--
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 9999999999999999999999999 5566789999999999988 445788999999999999999999888888888
Q ss_pred HHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 672 SILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+++..|+. +......+.+.|+++.|+.+..+.+.+++..|+.+|-+|+.
T Consensus 398 ac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 398 ACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 88888877 44567888999999999999999999999999999998865
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7e-24 Score=216.08 Aligned_cols=282 Identities=26% Similarity=0.349 Sum_probs=258.3
Q ss_pred ccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc
Q 004761 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
..+.-..+..|+..+.++..++|..++++|.+|+.. ..||..++..|++.+|.++-++.|..+|.++..+|.|+....+
T Consensus 121 liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~E 199 (550)
T KOG4224|consen 121 LIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE 199 (550)
T ss_pred EEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh
Confidence 344445567777777788889999999999999977 5899999999999999998889999999999999999999999
Q ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcc--hHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSG--AVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
||+.++.+|++|.|+.++++++..+++++..+|.+++.+..++..+++.+ .+|.|++++++++++++-.|..||.||+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLA 279 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999886 9999999999999999999999999999
Q ss_pred cCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC-CHHHHHHHHHHHH
Q 004761 598 IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG-SQRGKENAASILL 675 (732)
Q Consensus 598 ~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~-s~~~~e~A~~~L~ 675 (732)
...+-+..++++|.+|.++++| ++...+.-..++++.|++-++-+..-|+++|++.+||.+|+.+ +++.+-+|+.+|+
T Consensus 280 sdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLr 359 (550)
T KOG4224|consen 280 SDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLR 359 (550)
T ss_pred ccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHH
Confidence 9999999999999999999999 7777788888999999999998888899999999999999886 5569999999999
Q ss_pred HHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 676 QLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 676 ~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
+|+.....++..+.+.|++|+|..|+..|.-.++.....++..|.-.
T Consensus 360 nLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 360 NLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred HHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 99998888899999999999999999999988888877777776543
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.7e-22 Score=217.61 Aligned_cols=286 Identities=23% Similarity=0.264 Sum_probs=250.1
Q ss_pred ccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCH-HHHHHHHHHHHHhhcCC
Q 004761 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQ-LTQEHAVTALLNLSIND 518 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~-~v~~~A~~~L~nLs~~~ 518 (732)
...+.+.++.+++++.+++.+++..|+++|.+++.+++..|..+...|++++|+.++...+. ....++.|+|.|||.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 35567889999999999999999999999999999999999999999999999999987765 78899999999999875
Q ss_pred c-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 519 E-NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 519 ~-~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
+ ....-.-...++.|..++.+.+.++...|+|+|.+|+... +.-..+...|++|.|+++|.+.+..++..|++++.|+
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 3 2222223457999999999999999999999999999754 4555667789999999999999999999999999999
Q ss_pred ccCchhHH-HHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHH
Q 004761 597 SIFHENKA-RIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAAS 672 (732)
Q Consensus 597 s~~~~n~~-~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~ 672 (732)
....+... .++..|+++.|..++ ++...+...|++++.|++. ..+...+++++|.+|.|+.+|+++..+.+..|+|
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 99888776 577899999999999 4456688999999999965 4457789999999999999999999999999999
Q ss_pred HHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 673 ILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 673 ~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
++.|+|.+ +++....+++.|++++|+.++...+.+.-..+...|.++....+.
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999985 678888999999999999999888888888888888888665443
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.90 E-value=3e-23 Score=209.85 Aligned_cols=282 Identities=22% Similarity=0.249 Sum_probs=245.0
Q ss_pred ccccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 004761 440 EVTTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 518 (732)
...+.|.|+.+|+++.. ...-.+.+|++.|.++++........++++|++|.++.+|.+.+.+++++++|+|+|++.+.
T Consensus 109 ~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS 188 (526)
T COG5064 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS 188 (526)
T ss_pred hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc
Confidence 45668889999999954 44456779999999999988777788889999999999999999999999999999999985
Q ss_pred c-hHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 519 E-NKAMIAEAGAIEPLIHVLKSGNG--GAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 519 ~-~k~~i~~~g~l~~Lv~lL~~~~~--e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
. .|..+.+.|++++++.+|.+... ....++.|+|.||+.-.... ..-.-..++|.|.+++-+.++++..+|++||.
T Consensus 189 ~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 189 EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4 58888999999999999987654 67889999999999743221 11122357899999999999999999999999
Q ss_pred HhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHHHhcCCHHHHHHHH
Q 004761 595 NLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 595 nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
.|+..+..+ ..+++.|+.+.|+++| .++..++..|+..++|++...+.+ ..+++.|+++.+-.+|.+.-...+..||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999977554 4678899999999999 778888999999999998877755 5678899999999999988888999999
Q ss_pred HHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 672 SILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
|++.|++.++.++.+.+++.+++|+|+.++..-.-+.|+.|.+++.+...
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999889999999998887754
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.88 E-value=3.7e-23 Score=171.41 Aligned_cols=72 Identities=51% Similarity=0.931 Sum_probs=63.8
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|+++++..+++||+.||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999977999999999999999999999999999999985
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=1e-20 Score=191.56 Aligned_cols=279 Identities=22% Similarity=0.248 Sum_probs=243.2
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcCC
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~ 518 (732)
..+.+.|+.++++|.+.+.+++.+|+++|.+++.+++..|..+.+.|++.+|+.+|.+. +..+..++.|+|.||+...
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 55678899999999999999999999999999999999999999999999999999765 4588999999999999863
Q ss_pred c---hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 519 E---NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 519 ~---~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
+ +-..+. .+++.|.+++.+.++++...|+|+|.+|+....-+ ..+...|..+.|+++|.+.+..++..|++.+.
T Consensus 233 nP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 233 NPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 2 222232 35899999999999999999999999999866444 45556799999999999999999999999999
Q ss_pred HhccCchhHH-HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH-hCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Q 004761 595 NLSIFHENKA-RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL-STVGEGRLAIAREGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 595 nLs~~~~n~~-~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL-a~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|+....+.+. .++..|+++.+..+| ++..++...|++++.|+ +.+.+..+++++++.+|.|+++|..-.-..+..||
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 9999877665 577899999999999 77779999999999999 45666778999999999999999988889999999
Q ss_pred HHHHHHhcC---ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 672 SILLQLCLH---SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 672 ~~L~~L~~~---~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
|++.|...+ .|+..+.+++.|.+.+|+.++...+.++-+.|..+++++-+
T Consensus 391 WAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 391 WAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 999999875 57888999999999999999998888787888877777644
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.75 E-value=5.3e-16 Score=178.50 Aligned_cols=258 Identities=25% Similarity=0.269 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHc
Q 004761 459 NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLK 538 (732)
Q Consensus 459 ~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~ 538 (732)
....+.+++.|.+++.+ ..+...+.+.|.|+.|+.+|.+++.++...+++.|.+||...+|+..|.+.|++++|+.++.
T Consensus 263 eqLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 34456788899999955 58889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHh
Q 004761 539 SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDL 618 (732)
Q Consensus 539 ~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~l 618 (732)
+++.+.+..++.+|+|||.+++.|..+...|++|.|+.+|.+++ .+..++.+|+|||..+++|..+...+++|.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999998654 4466999999999999999999999999999999
Q ss_pred c--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-----------------------------------
Q 004761 619 M--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES----------------------------------- 661 (732)
Q Consensus 619 L--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~----------------------------------- 661 (732)
+ .++..+...+++++.||+..+.+.+.+.+.+|++.|++...+
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v 499 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIV 499 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 8 455556667788888999988887777777777766653211
Q ss_pred ---CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC--hHHHHHHHHHHHHh
Q 004761 662 ---GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT--PRAKEKAQQLLSHF 719 (732)
Q Consensus 662 ---~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~--~~~k~kA~~lL~~l 719 (732)
.+++..-.++++|.||...+..+...+.+.+++|.|..++..|. +...-.+..++..+
T Consensus 500 ~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 500 SSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred hcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 13444666888888888767777787778999999999998874 34444444444444
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.74 E-value=8.2e-16 Score=176.98 Aligned_cols=279 Identities=21% Similarity=0.280 Sum_probs=224.9
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
+...+.|+.|++.|.+++.+....++..|..|+-. .+|+..|.+.|+|+.|+.++.+++..++..++++|.|||.++..
T Consensus 286 M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 286 MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 45678899999999999999999999999999965 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHHhccC
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~ 599 (732)
|..|+..|.+|.|+.+|.++ ..+..+..+|.+||..+++|..+...+++|.++++|-. ++.++...++.++.||+.+
T Consensus 365 R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 99999999999999999865 45677999999999999999999999999999998655 3455556677777788887
Q ss_pred chhHHHHHhhchHHHHHHhc---------------------------------------CCChHHHHHHHHHHHHHhC--
Q 004761 600 HENKARIIQAGAVKHLVDLM---------------------------------------DPSTGMVDKAVALLANLST-- 638 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL---------------------------------------~~~~~l~e~al~iL~nLa~-- 638 (732)
+.|...+.+.|+++.|++.. ..+....-.++++|+||..
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 77777777666665544422 0122333455666666642
Q ss_pred ------------------------------------------ChhhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHHH
Q 004761 639 ------------------------------------------VGEGRLAIAREGGIPSLVEVVES--GSQRGKENAASIL 674 (732)
Q Consensus 639 ------------------------------------------~~~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~L 674 (732)
.+.+...+.+.|.++.|+.++.. .+.+..-..+.++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 23344555677889999999966 3577788888889
Q ss_pred HHHhcCChHhHHHHH-hCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 675 LQLCLHSPKFCTLVL-QEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~-~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
+++..+.. .+..++ +.+++..|+.++++.++.+++.|-.+|-.+.+..
T Consensus 603 ~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 603 YQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 99988754 444454 5789999999999999999999999888886653
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.69 E-value=1.9e-17 Score=133.77 Aligned_cols=63 Identities=54% Similarity=0.910 Sum_probs=60.3
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 302 (732)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 57899999999999999999999999998
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=9.1e-16 Score=177.91 Aligned_cols=265 Identities=27% Similarity=0.296 Sum_probs=227.2
Q ss_pred HHH-HHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC------------CHHHHHHHHHHHHHhhcC-CchHHHHH-
Q 004761 461 IQA-SAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE------------AQLTQEHAVTALLNLSIN-DENKAMIA- 525 (732)
Q Consensus 461 ~~~-~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~------------~~~v~~~A~~~L~nLs~~-~~~k~~i~- 525 (732)
-+. .|+..|..++.+ ++.|..+.+.|++.++-+|+.-+ .-.++..|..+|-||.+. ..||..+.
T Consensus 313 H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 344 677777777754 69999999999999999987521 245789999999999886 46788777
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHh-hcCCCHHHHHHHHHHHHHhccC-ch
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDL-LGSGTLRGRKDAATALFNLSIF-HE 601 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~-~~ 601 (732)
..|+++.+|..|.+...++....+.+|.||+... .-|..+.+.|-+..|+.. |+.......+..+.|||||+.+ .+
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 5699999999999999999999999999999843 336667777988888876 5666677899999999999985 57
Q ss_pred hHHHHHh-hchHHHHHHhc-C----CChHHHHHHHHHHHHH----hCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Q 004761 602 NKARIIQ-AGAVKHLVDLM-D----PSTGMVDKAVALLANL----STVGEGRLAIAREGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 602 n~~~lv~-~G~V~~Ll~lL-~----~~~~l~e~al~iL~nL----a~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|+..|.. -|++..|+.+| . ....+++.+=+||.|+ +.+.+.|+.+.+++.+..|++.|++.+-.+.-|+|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 9999998 79999999999 2 2446789999999987 45778899999999999999999999999999999
Q ss_pred HHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccCC
Q 004761 672 SILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGS 726 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~~ 726 (732)
++||||...+++.++.+++.|+++.|..|+.+.+....+-++..|++|-++|+..
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 9999999999999999999999999999999999988889999999998888543
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.63 E-value=1.2e-14 Score=163.66 Aligned_cols=279 Identities=26% Similarity=0.280 Sum_probs=224.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC---Cch
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN---DEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~---~~~ 520 (732)
...++..+.+|.+.++..|-.|...|..+++.+.+.+..+.+.|+|+.||.+|.+.+.+++.+|+.+|.||... +.|
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999875 358
Q ss_pred HHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC--------------CHHH
Q 004761 521 KAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG--------------TLRG 585 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--------------~~~~ 585 (732)
+..|.+.++++.++++|+. ++.+++++.+++||||+.+|..|..|... ++..|.+-+-.. +..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence 9999999999999999986 78999999999999999998888777654 456665544311 2456
Q ss_pred HHHHHHHHHHhcc-CchhHHHHHh-hchHHHHHHhc-------CCChHHHHHHHHHHHHHhCChh-----h-H-------
Q 004761 586 RKDAATALFNLSI-FHENKARIIQ-AGAVKHLVDLM-------DPSTGMVDKAVALLANLSTVGE-----G-R------- 643 (732)
Q Consensus 586 ~~~Al~aL~nLs~-~~~n~~~lv~-~G~V~~Ll~lL-------~~~~~l~e~al~iL~nLa~~~~-----~-r------- 643 (732)
...+..+|.|++. ..+.|.+|.+ .|.|..|+.++ ..+...+++|+.+|.||.-.-+ . +
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 7889999999998 6778999988 79999999887 3466789999999999964211 0 0
Q ss_pred -------------------HHHH---------H----cCc-----HHHHHH----HH-hcCCHHHHHHHHHHHHHHhcCC
Q 004761 644 -------------------LAIA---------R----EGG-----IPSLVE----VV-ESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 644 -------------------~~i~---------~----~~~-----I~~Lv~----lL-~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
..+. + ..| -+.+++ +| .+..+.+.|.++.+|-||+..+
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 0000 0 001 123333 23 3456788999999999999864
Q ss_pred h----HhHHHH-HhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 682 P----KFCTLV-LQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 682 ~----~~~~~v-~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
. ..+..+ .++.+.+.|+.+++++++++.+.++.+|++|+...
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 3 344445 56889999999999999999999999999996543
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=3.6e-13 Score=137.31 Aligned_cols=278 Identities=17% Similarity=0.244 Sum_probs=231.0
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCch---
Q 004761 447 VKKLIEDLN--STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDEN--- 520 (732)
Q Consensus 447 i~~Lv~~L~--s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~--- 520 (732)
...++..|. ..+.+.....+..++.-+-.++.||..+.+.+..+.+...|.. +...+...+.+++.-|..+++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 455666664 4456667778888888888888999999999999999977764 3346888888888888776542
Q ss_pred -------HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCH----HHHHH
Q 004761 521 -------KAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTL----RGRKD 588 (732)
Q Consensus 521 -------k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~ 588 (732)
...|+..|++..|++.|+.+ ++.....+..+|..|+..++.+..|.+.|++..|+.++.+.+. ...+.
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 46777888999999999876 5888889999999999999999999999999999999987442 34567
Q ss_pred HHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHh-CChhhHHHHHHcCcHHHHHHHHhcC--
Q 004761 589 AATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLS-TVGEGRLAIAREGGIPSLVEVVESG-- 662 (732)
Q Consensus 589 Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa-~~~~~r~~i~~~~~I~~Lv~lL~~~-- 662 (732)
++..|..|+.++.++..+|+.|+.+.++.++ ..++.+.+.++.++.-|| +.|+.-..+++.|+-...++-|+..
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 8888999999999999999999999999998 678999999999999996 5677778889999988889988763
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh------hccccC
Q 004761 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF------RNQREG 725 (732)
Q Consensus 663 s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l------~~~~~~ 725 (732)
...++.+|++.+.|+..++.+++..++..| ++.|+......++.....|..+|+-| |+.|.|
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWTG 454 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhcc
Confidence 456899999999999998888888888876 78888888887777777777788755 666655
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.4e-12 Score=133.03 Aligned_cols=265 Identities=18% Similarity=0.261 Sum_probs=222.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--cCCHHHHHHHHHHHHHhhc-CCchHHHHHHcCC
Q 004761 453 DLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY--SEAQLTQEHAVTALLNLSI-NDENKAMIAEAGA 529 (732)
Q Consensus 453 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~--s~~~~v~~~A~~~L~nLs~-~~~~k~~i~~~g~ 529 (732)
.-.+++.....+++..|..+....+. +.++.+...++.+|. .++.++....+..+..-+. ++.||+.+++.++
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 34466677778999999999877664 456788899999985 4567788888888877665 5789999999999
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhccCchh----------HHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 004761 530 IEPLIHVLKSG-NGGAKENSAAALFSLSVLEEY----------KAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLS 597 (732)
Q Consensus 530 l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~----------k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs 597 (732)
++.+...|... ...+...+.+++..|...++. ...|...|++..|++.++.+ +|.....++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 99999777654 455777888999988776553 35566678889999999865 6888999999999999
Q ss_pred cCchhHHHHHhhchHHHHHHhc-CC----ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh--cCCHHHHHHH
Q 004761 598 IFHENKARIIQAGAVKHLVDLM-DP----STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE--SGSQRGKENA 670 (732)
Q Consensus 598 ~~~~n~~~lv~~G~V~~Ll~lL-~~----~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~--~~s~~~~e~A 670 (732)
..++.+..+.+.|++..|++++ +. ...+...++.+|..|+.....+..|++.||.+.++.++. ..+|.+.+.+
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999999999 32 234677899999999999999999999999999999874 4689999999
Q ss_pred HHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC--hHHHHHHHHHHHHhhc
Q 004761 671 ASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT--PRAKEKAQQLLSHFRN 721 (732)
Q Consensus 671 ~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~--~~~k~kA~~lL~~l~~ 721 (732)
+.++.-||-..|++...+++.|+-...++-+.... ..+++.|.++++++-.
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888765 4688999999999843
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.53 E-value=3.8e-13 Score=151.73 Aligned_cols=278 Identities=23% Similarity=0.251 Sum_probs=221.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCch
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME--NRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
-+.|+.||.+|.+.+.++++.|+.+|++|...... |+..|.+.++|+.++.+|+. .|.++++....+|+||+.++..
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 56689999999999999999999999999976655 99999999999999999986 7999999999999999998777
Q ss_pred HHHHHHcCCHHHHHHHHcCC--------------CHHHHHHHHHHHHHhcc-CchhHHHHHhc-chHHHHHHhhcC----
Q 004761 521 KAMIAEAGAIEPLIHVLKSG--------------NGGAKENSAAALFSLSV-LEEYKAKIGRS-GAVKALVDLLGS---- 580 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~--------------~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~-g~i~~Lv~lL~~---- 580 (732)
+..++.. ++..|..-+-.+ ..++-.+++++|.|++. ..+.+..+.+. |.|..|+.++++
T Consensus 354 K~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~ 432 (717)
T KOG1048|consen 354 KMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK 432 (717)
T ss_pred HHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence 7766643 566666544221 13466789999999987 66778888876 888888877651
Q ss_pred --CCHHH-------------------------------------------------------------------------
Q 004761 581 --GTLRG------------------------------------------------------------------------- 585 (732)
Q Consensus 581 --~~~~~------------------------------------------------------------------------- 585 (732)
.+...
T Consensus 433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e 512 (717)
T KOG1048|consen 433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE 512 (717)
T ss_pred ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence 12222
Q ss_pred -----------------------HHHHHHHHHHhccCch-----hHHHH-HhhchHHHHHHhc-CCChHHHHHHHHHHHH
Q 004761 586 -----------------------RKDAATALFNLSIFHE-----NKARI-IQAGAVKHLVDLM-DPSTGMVDKAVALLAN 635 (732)
Q Consensus 586 -----------------------~~~Al~aL~nLs~~~~-----n~~~l-v~~G~V~~Ll~lL-~~~~~l~e~al~iL~n 635 (732)
.++++.||.||+.... .+..+ .+..+.++|+++| ..+..++..++++|.|
T Consensus 513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRN 592 (717)
T ss_pred eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhh
Confidence 3455556666654321 22222 4556678888888 7788889999999999
Q ss_pred HhCChhhHHHHHHcCcHHHHHHHHhcC------CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC-hHH
Q 004761 636 LSTVGEGRLAIAREGGIPSLVEVVESG------SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT-PRA 708 (732)
Q Consensus 636 La~~~~~r~~i~~~~~I~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~-~~~ 708 (732)
|+.+...+..|. ..+++-|+..|..+ +.+..-.++.+|+++...+..+...+.+.+++++|+.+..+.. +++
T Consensus 593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 999998888877 57899999999653 3677888999999999989999999999999999999999864 688
Q ss_pred HHHHHHHHHHhhccc
Q 004761 709 KEKAQQLLSHFRNQR 723 (732)
Q Consensus 709 k~kA~~lL~~l~~~~ 723 (732)
-+.|..+|..|+.++
T Consensus 672 ~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 672 FKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999998887654
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=3.2e-12 Score=131.56 Aligned_cols=191 Identities=26% Similarity=0.284 Sum_probs=169.4
Q ss_pred CchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 444 TPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.+.++.|+..|+. .++.++..|+..+.+.+.. +.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 4567999999984 5789999999999998754 5899999999999999999999999999999999999999999988
Q ss_pred HHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 523 MIAEAGAIEPLIHVLKSG--NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
.+-. +++.+++...+. +.+.+..++.+|.+|+..+++...+.. .++.++.+|..|+..++..++++|.|||.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 7743 577777765554 578889999999999998888777754 6899999999999999999999999999999
Q ss_pred hhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCC
Q 004761 601 ENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~ 639 (732)
.+...++.++++..++.++ +.+..+...++.++.|+..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 45788899999999999654
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.38 E-value=3.5e-11 Score=123.92 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=171.1
Q ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 525 AEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.+++.++.|+.+|+. .++.+++.|..++.+.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.|++...+|+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 466779999999995 4799999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 604 ARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
..+-. .++.+.+.+ ..+..++..++.+|.||+...+.+..+.. .++.++.++.+|+..++.+++.+|++|+.
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~- 163 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE- 163 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc-
Confidence 87643 566666665 23678889999999999988887777654 69999999999999999999999999999
Q ss_pred ChHhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhccccC
Q 004761 681 SPKFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 681 ~~~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~~~~ 725 (732)
++.....++..+++..++.|++... ...-..+..+..++.+.+..
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 7888899999999999999999875 56677888888888665543
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.38 E-value=2.5e-10 Score=130.14 Aligned_cols=275 Identities=17% Similarity=0.199 Sum_probs=222.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
....+.|...|.++++.++..+++.|+.++.++......+.+.+.++.++.++.+++..+...|..+|.+++..+.....
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 45668899999999999999999999999988876677777889999999999999999999999999999988877777
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
+...+.+..|..++...+..+|..+..++.+++.. ++....+...|+++.++..|++++.-++.+|+..|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 88888899999999888888999999999999865 45566667779999999999998889999999999999999999
Q ss_pred HHHHHhhchHHHHHHhc-C--CCh---H-HHHHHHHHHHHHhCChhhHHHHHH-cCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 603 KARIIQAGAVKHLVDLM-D--PST---G-MVDKAVALLANLSTVGEGRLAIAR-EGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~--~~~---~-l~e~al~iL~nLa~~~~~r~~i~~-~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
...+.+.|+++.|..++ + .++ . +.-..+...++++....... +.. ...+..+..++.+.++..+..|+.++
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v-~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV-LELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 99999999999999999 2 222 2 23334467778877422211 111 23456666777888999999999999
Q ss_pred HHHhcCChHhHHHH-HhCC-----CHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 675 LQLCLHSPKFCTLV-LQEG-----AVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 675 ~~L~~~~~~~~~~v-~~~G-----~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
..+|. +.+....+ ...| ++........+++...|.++..+|..+=
T Consensus 315 g~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 315 GQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99997 55666656 3332 3555566666777888999988888873
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.36 E-value=7.6e-12 Score=146.05 Aligned_cols=225 Identities=24% Similarity=0.286 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cch-HHHHHHcCCHHHHHH
Q 004761 459 NEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DEN-KAMIAEAGAIEPLIH 535 (732)
Q Consensus 459 ~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~-k~~i~~~g~l~~Lv~ 535 (732)
...++.|..+|.+|+..+..|+..++.. |++..+|..|.+...+++.....+|.||++. +.| +..+-+.|.+..|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 3567889999999999999999888864 9999999999998889999899999999986 444 666668899999886
Q ss_pred H-HcCCCHHHHHHHHHHHHHhccC-chhHHHHHhc-chHHHHHHhhcCC----CHHHHHHHHHHHHHhccC----chhHH
Q 004761 536 V-LKSGNGGAKENSAAALFSLSVL-EEYKAKIGRS-GAVKALVDLLGSG----TLRGRKDAATALFNLSIF----HENKA 604 (732)
Q Consensus 536 l-L~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~-g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~----~~n~~ 604 (732)
. |+..........+.+||||+.+ .+||..|..- |++..||.+|... ...+.+.|-.+|.|.+++ .+.|.
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 4 5555666778899999999885 4889988876 9999999999864 467888999999998774 45677
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH-hCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL-STVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL-a~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
.+.+.+++..|+..| +.+-.++.+++++|||| +++++.++.+++.|+++.|..++++.+....+-++.+|.||..+.|
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 788899999999999 77788899999999999 6788899999999999999999999999999999999999998764
Q ss_pred H
Q 004761 683 K 683 (732)
Q Consensus 683 ~ 683 (732)
.
T Consensus 605 A 605 (2195)
T KOG2122|consen 605 A 605 (2195)
T ss_pred h
Confidence 3
No 22
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.5e-11 Score=117.36 Aligned_cols=77 Identities=36% Similarity=0.546 Sum_probs=72.7
Q ss_pred CCCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 232 SGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 232 ~~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
...++|+.++|.|++++|+|||+.++|.||+|..|..+++.-+...|+|+.+|+...++||++|+..|..|...|++
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 34579999999999999999999999999999999999998668899999999999999999999999999999976
No 23
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.1e-11 Score=131.19 Aligned_cols=123 Identities=22% Similarity=0.235 Sum_probs=94.6
Q ss_pred CCCCcCchHHHH---HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 004761 157 QDDTIRCTDHLV---KIIESLGLTSNQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSG 233 (732)
Q Consensus 157 ~~~~~~~~~~~~---~i~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (732)
.|+++++.+.|. +|.++..|.++..+ +|+..+-...|+.+..+...+++ -
T Consensus 796 ~D~rsf~~~~F~rA~~I~~~k~L~s~~~I-E~l~~f~nr~E~~r~~ea~EeED--------------------------~ 848 (929)
T COG5113 796 SDKRSFDIDFFRRALRICENKYLISESQI-EELRSFINRLEKVRVIEAVEEED--------------------------M 848 (929)
T ss_pred cccccccHHHHHHHHHHHhccccCCHHHH-HHHHHHHHHHHHHHHHHhhhhhh--------------------------c
Confidence 377788888887 44555567776666 55555555444443322222222 2
Q ss_pred CCCCCccccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
-++|++|..|++..+|+|||+++ +|.|.||+.|..++..+ .|+|+.|.||+.++++||-.||+.|-.|....+
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 35999999999999999999986 89999999999999887 799999999999999999999999999865443
No 24
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.1e-11 Score=138.16 Aligned_cols=72 Identities=33% Similarity=0.469 Sum_probs=67.8
Q ss_pred CCCCccccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
++|++|..||+..+|+|||++| +|+|.||+.|++|+..+ .+.|+||++|+.+.++||.+||..|+.|...+.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 4999999999999999999998 99999999999999987 789999999999999999999999999977653
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.09 E-value=2.3e-09 Score=97.35 Aligned_cols=116 Identities=34% Similarity=0.393 Sum_probs=105.7
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-h
Q 004761 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-E 560 (732)
Q Consensus 483 i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~ 560 (732)
+.+.|+++.|+.+|.+.+..++..++.+|.+++.+ +.....+.+.|+++.++.+|.++++.++..++++|.+|+... .
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999987 677888888999999999999999999999999999999876 4
Q ss_pred hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 561 YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 561 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
....+...|+++.|++++.+.+...++.|+.+|.||+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45666777999999999999999999999999999873
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.07 E-value=7.9e-11 Score=86.10 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=31.2
Q ss_pred cccCcccCCCceecCCCcccchHHHHHHHhcCC---CCCCCC
Q 004761 242 CPLSLELMIDPVIVASGQTYERVFIQKWLDHGL---NICPKT 280 (732)
Q Consensus 242 Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~---~~cP~~ 280 (732)
||||+++|+|||+++|||+||+.||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997542 369986
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.07 E-value=3.7e-09 Score=95.97 Aligned_cols=116 Identities=29% Similarity=0.401 Sum_probs=107.3
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
.+++.|+++.|++++ +.+..++..++.+|.+++.. ++.+..+.+.|+++.+++++.+.++..+..|+++|.+++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999 77789999999999999987 7788888999999999999999999999999999999999887
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.....+.+.|+++.|..+++.++.++++.|..+|.++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999998874
No 28
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.07 E-value=8e-11 Score=113.38 Aligned_cols=60 Identities=27% Similarity=0.540 Sum_probs=53.0
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhc---------------CCCCCCCCCCCCCCCCCcccH
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH---------------GLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~---------------~~~~cP~~~~~l~~~~l~pn~ 293 (732)
.+..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 345678999999999999999999999999999999852 235799999999999999986
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.06 E-value=3.1e-08 Score=113.06 Aligned_cols=273 Identities=16% Similarity=0.153 Sum_probs=210.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-HHHHHHc
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KAMIAEA 527 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~-k~~i~~~ 527 (732)
.++..|...+.+....++..|..+.... ..... ..+..+.|...|.++++.++..++..|.++..+... ...+.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 3788888888777778888888887543 22222 347788999999999999999999999999887665 4445578
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-hHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-NKARI 606 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n~~~l 606 (732)
+.++.++..|.+++.++...|+.+|..++.....-..+...+.+..|..++...+..++..+..++.+++...+ ....+
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999988877778788889999999988777888889999999987654 55566
Q ss_pred HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC--CH-HH---HHHHHHHHHHHhc
Q 004761 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG--SQ-RG---KENAASILLQLCL 679 (732)
Q Consensus 607 v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~--s~-~~---~e~A~~~L~~L~~ 679 (732)
...|+++.++..| +++.-++..++.+|..|+..+.|..-+.+.|.++.|+.++... ++ -. --..+....++..
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 7799999999999 6666778899999999999999999999999999999999653 33 11 1112233334444
Q ss_pred CChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 680 HSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 680 ~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
.++....... ...+..|..+++++++..+..|...|..+....+|
T Consensus 279 ~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 279 VSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred cChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 3332221111 23456677788888888888898888888655444
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=8.8e-09 Score=109.71 Aligned_cols=254 Identities=17% Similarity=0.213 Sum_probs=204.1
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...|..||+.|...+.+........|..|+--. +|+..+.+.|.|..|++++-..+++++...+..|.||+.+..++..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 567889999999988888888888999988554 8999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHHhccCchh
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~n 602 (732)
|+..|.+|.++.+|.+... ...|...|+.++.+++.|..+.-..+|+.+.+.+-.+. .++-.+.+....|||.+..|
T Consensus 382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999986542 34688889999999999999999999999998766543 44444444445699999999
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhc
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVESG-SQRGKENAASILLQLCL 679 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~~-s~~~~e~A~~~L~~L~~ 679 (732)
...+++-.++..|++.- ..... ....++.|++.+.. .+..+++ -+..|..++... ++.---.|.++|.+|..
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred ceEEecCcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 88888877888887765 22211 23567888988775 3455554 356666666543 44556678899999988
Q ss_pred CChHhHHHHHhCCCHHHHHHchhcCC
Q 004761 680 HSPKFCTLVLQEGAVPPLVGLSQSGT 705 (732)
Q Consensus 680 ~~~~~~~~v~~~G~i~~L~~Ll~~g~ 705 (732)
.+-.+...+-+...+|.+-..++.|-
T Consensus 535 ~dldw~~ilq~~~LvPw~k~~L~pga 560 (791)
T KOG1222|consen 535 TDLDWAKILQSENLVPWMKTQLQPGA 560 (791)
T ss_pred CCCCHHHHHhhccccHHHHHhhcCCc
Confidence 77788888888999999888887763
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.04 E-value=2e-08 Score=106.09 Aligned_cols=279 Identities=15% Similarity=0.158 Sum_probs=209.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc----C---CHHHHHHHHHHHHHhhc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS----E---AQLTQEHAVTALLNLSI 516 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s----~---~~~v~~~A~~~L~nLs~ 516 (732)
.+.++.|.+...|++.++-.+..++|.+++..+.++|..+.+.||-..++..|+. + +.+....+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4556777788888888888999999999999999999999999998888887763 2 24566777788999877
Q ss_pred C-CchHHHHHHcCCHHHHHHHHcCC--C--------------------------------------------HHHHHHHH
Q 004761 517 N-DENKAMIAEAGAIEPLIHVLKSG--N--------------------------------------------GGAKENSA 549 (732)
Q Consensus 517 ~-~~~k~~i~~~g~l~~Lv~lL~~~--~--------------------------------------------~e~~~~Aa 549 (732)
+ +..+.++++.|+++.|...+.-+ + ++.++...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 6 45588888999998776655322 1 11222333
Q ss_pred HHHHHhccCchhHHHHHhcchHHHHHHhhcCC-CHHHH-------HHHHHHHHHhccCchhHHHHHhhc-hHHHHHHhc-
Q 004761 550 AALFSLSVLEEYKAKIGRSGAVKALVDLLGSG-TLRGR-------KDAATALFNLSIFHENKARIIQAG-AVKHLVDLM- 619 (732)
Q Consensus 550 ~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~-------~~Al~aL~nLs~~~~n~~~lv~~G-~V~~Ll~lL- 619 (732)
.+|...+.++..|-.++..|.+..++++++.. +..-+ +.++....-|...++.-..+...| .++.+..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 44444555555666677778888888888752 22122 223333333444556666666666 888888888
Q ss_pred CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCH
Q 004761 620 DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-----GSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694 (732)
Q Consensus 620 ~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-----~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i 694 (732)
+.+..+...+.-+++|+++..+....+++.+.+..|+..+.. |+-+.+..++++|.++.. ...+...++.+|+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchH
Confidence 778888888889999999999999999999999999997743 567788889999999987 34466788899999
Q ss_pred HHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 695 PPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 695 ~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
+.++..+....|.+.-|-...|++++...
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 99999999998888888888888876643
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.02 E-value=6.6e-08 Score=106.04 Aligned_cols=273 Identities=17% Similarity=0.092 Sum_probs=201.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE-AQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
...++..|..++.-++..|+..|..+...+..+.......-.+..|...|++. +...+..|+.+|.+|-..+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 35566788888888999999999999866543211111011233455556543 57788889999999999999999999
Q ss_pred HcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHHhccCc--
Q 004761 526 EAGAIEPLIHVLKSG--NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIFH-- 600 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~-- 600 (732)
+.+++++|+.+|+.. +.....+++-++|-|+..++........+.|+.|+++++... ..+.+-++.+|.||...+
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999864 468899999999999998886666666799999999999754 678999999999998843
Q ss_pred -----hhHHHHHhhchHHHHHHhc---CCChHHHHHHHHH-------HHHHhCC------------------------hh
Q 004761 601 -----ENKARIIQAGAVKHLVDLM---DPSTGMVDKAVAL-------LANLSTV------------------------GE 641 (732)
Q Consensus 601 -----~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~i-------L~nLa~~------------------------~~ 641 (732)
.....|+..|+.+.+-.+. -.++++.+..-.+ +..+++. .+
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 2345678778776555554 2355544332221 1222221 12
Q ss_pred hHHHHHHcC--cHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHH
Q 004761 642 GRLAIAREG--GIPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718 (732)
Q Consensus 642 ~r~~i~~~~--~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 718 (732)
+...+.+.+ .+..|+++|. +.++....-||.=+..++++-|..+..+-+.|+=..++.++.+.++++|..|..+++-
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 233444444 3788999985 4567777788888999999888888888899999999999999999999999988876
Q ss_pred h
Q 004761 719 F 719 (732)
Q Consensus 719 l 719 (732)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 33
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-08 Score=108.70 Aligned_cols=196 Identities=23% Similarity=0.276 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC
Q 004761 501 QLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS 580 (732)
Q Consensus 501 ~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~ 580 (732)
..+...|+..|.||+.+-.....|.....+..|+..|...+.+........|..|+..++||..+++.|.+..|+.++..
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 45667889999999988777778888889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH
Q 004761 581 GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVV 659 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL 659 (732)
.++..++..+..++||+....++.+|+..|.+|.|..+| +... ..-|+.+|..++.....+..+.-+++|+.+.+.+
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 3221 2448889999999888888888899999999976
Q ss_pred hcCC-HHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHH
Q 004761 660 ESGS-QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVG 699 (732)
Q Consensus 660 ~~~s-~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~ 699 (732)
-.++ .++....++...|+|. +..+.+.+.+-.++..|+.
T Consensus 435 ~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ 474 (791)
T KOG1222|consen 435 LSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLME 474 (791)
T ss_pred HhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHH
Confidence 5543 3444444555578887 3445555555444444443
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=6.4e-10 Score=119.99 Aligned_cols=69 Identities=20% Similarity=0.432 Sum_probs=63.3
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~ 305 (732)
+...|.||||+++|.+||+++|||+||..||..|+... ..||.|+.++....+.+|+.|.++|+.|...
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 55789999999999999999999999999999999864 5899999999888999999999999999653
No 35
>PRK09687 putative lyase; Provisional
Probab=98.93 E-value=1.4e-07 Score=99.40 Aligned_cols=233 Identities=15% Similarity=0.068 Sum_probs=146.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+..|++.|.+.+..++..|+..|..+.. ...++.+..++.++++.++..|+++|..|...+.. .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 6889999999999999999999887652 24567788888999999999999999988543221 1
Q ss_pred cCCHHHHHHH-HcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 527 AGAIEPLIHV-LKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 527 ~g~l~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
...++.|..+ +++.++.++..|+.+|.++....... ...+++.+...+.+.++.++..|+.+|..+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------
Confidence 2356777766 66778899999999998875322100 1123455555666666677777777765432
Q ss_pred HHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-----
Q 004761 606 IIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL----- 679 (732)
Q Consensus 606 lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~----- 679 (732)
...+++.|+.+| +++..+...|+..|+.+....+ .+++.|+..+.+.++.++..|+..|..+-.
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~ 226 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLS 226 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHH
Confidence 123566666666 5566666666666666522111 234445555555555555555555442111
Q ss_pred ------CChHhHHHHH----hC---CCHHHHHHchh-cCChHHHHHHHHHHH
Q 004761 680 ------HSPKFCTLVL----QE---GAVPPLVGLSQ-SGTPRAKEKAQQLLS 717 (732)
Q Consensus 680 ------~~~~~~~~v~----~~---G~i~~L~~Ll~-~g~~~~k~kA~~lL~ 717 (732)
.++.....++ +. -++|.|..+++ ..+++++++|.+.|+
T Consensus 227 ~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 227 VLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 0011111111 11 25788888886 667888888888775
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.90 E-value=1.6e-07 Score=100.97 Aligned_cols=219 Identities=19% Similarity=0.194 Sum_probs=162.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc------CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC------GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~------G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.+++.+ +.+++.....+..+..+...++.....+... ....++++++.++|..++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 4678888999999999998887666555541 257788888889999999999999999976544333
Q ss_pred HHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhh-----cC--CCHHHHHHHHH
Q 004761 523 MIAEAGAIEPLIHVLKSG----NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLL-----GS--GTLRGRKDAAT 591 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-----~~--~~~~~~~~Al~ 591 (732)
.-...+.++.++..|.+. +.+.+..++.+|.+|...+.+|..+...++++.++.++ .. .+.+....++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 322255678888887752 34566889999999999999999999999999999999 22 24778899999
Q ss_pred HHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChh--hHHHHHHcCcHHHHHHHHhc--CCHH
Q 004761 592 ALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGE--GRLAIAREGGIPSLVEVVES--GSQR 665 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~--~r~~i~~~~~I~~Lv~lL~~--~s~~ 665 (732)
+++-|+.+++....+...++|+.|++++ .....++.-++++|.||+.... ....|+..|+++.+-.+... ++++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999999 6778899999999999988776 77788887666666655543 4555
Q ss_pred HHH
Q 004761 666 GKE 668 (732)
Q Consensus 666 ~~e 668 (732)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 37
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.88 E-value=1.6e-07 Score=99.31 Aligned_cols=278 Identities=17% Similarity=0.123 Sum_probs=205.9
Q ss_pred cCchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CC-------HHHHHHHHHHHHH
Q 004761 443 TTPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EA-------QLTQEHAVTALLN 513 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~-------~~v~~~A~~~L~n 513 (732)
+...+..+++.|.+. +++...-....+...+ ++...+-.+++.|.+.-++.+++. .+ ......++....-
T Consensus 221 d~sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vl 299 (604)
T KOG4500|consen 221 DCSLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVL 299 (604)
T ss_pred cchHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhh
Confidence 355667788887653 3444445555666666 455778888999999999998875 22 1223334444444
Q ss_pred hhcCCchHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc-----CCCHHHHH
Q 004761 514 LSINDENKAMIAEAG-AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG-----SGTLRGRK 587 (732)
Q Consensus 514 Ls~~~~~k~~i~~~g-~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-----~~~~~~~~ 587 (732)
|...++....+...+ .++.++..+.+.+....-.++-+|.|++..+++...+++.|.+..|+++|. +++.+.+.
T Consensus 300 lltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qh 379 (604)
T KOG4500|consen 300 LLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQH 379 (604)
T ss_pred hhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH
Confidence 555666666666555 899999999999999999999999999999999999999999999999885 35788999
Q ss_pred HHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHcC-cHHHHHHHHhcCCH
Q 004761 588 DAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIAREG-GIPSLVEVVESGSQ 664 (732)
Q Consensus 588 ~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~-~I~~Lv~lL~~~s~ 664 (732)
+++.||.||...-.|+..++.+|+++.++.++ ...+.++..-++.|.-+....+ ...++.+.. .+..|+..-++.+.
T Consensus 380 A~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~ 459 (604)
T KOG4500|consen 380 ACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDF 459 (604)
T ss_pred HHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCcc
Confidence 99999999999999999999999999999999 6677788888888887765444 223333332 36666666666544
Q ss_pred H-HHHHHHHHHHHHhcC--ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 665 R-GKENAASILLQLCLH--SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 665 ~-~~e~A~~~L~~L~~~--~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
. +.-..-..|..+.++ ..+....+.+.|++..++.++..++-..+..|.-+|..+..
T Consensus 460 aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 460 AGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred chhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 3 455566777777776 33455667788999999999988877777777766665543
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.86 E-value=1.5e-07 Score=101.10 Aligned_cols=228 Identities=20% Similarity=0.168 Sum_probs=164.6
Q ss_pred CHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCch-HHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Q 004761 488 AIPPLLSLLYS--EAQLTQEHAVTALLNLSINDEN-KAMIAE------AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL 558 (732)
Q Consensus 488 ~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~-k~~i~~------~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 558 (732)
....++.+|+. ++.++....+..+..+..++.. ...+.. ...+.+++.++.+++.-+...|+.+|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 45666677653 6889999999999998766544 444433 23688999999999999999999999999876
Q ss_pred chhHHHHHhcchHHHHHHhhcCC----CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc------CC--ChHHH
Q 004761 559 EEYKAKIGRSGAVKALVDLLGSG----TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM------DP--STGMV 626 (732)
Q Consensus 559 ~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL------~~--~~~l~ 626 (732)
...+..-...+.++.+++++++. +......|+.+|.+|...++.|..+.+.|+++.+..++ +. ...+.
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 65555444466788888888752 34556889999999999999999999999999999999 12 23456
Q ss_pred HHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHchhcC
Q 004761 627 DKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLSQSG 704 (732)
Q Consensus 627 e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll~~g 704 (732)
-.++-+++.|+..++....+.+.+.|+.|+++++. ..+++..-++++|.|++..+++ ....++..|+++.|-.|....
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 78999999999999999999988899999999976 4677888899999999987654 777778888777777766653
Q ss_pred --ChHHHHHHHHH
Q 004761 705 --TPRAKEKAQQL 715 (732)
Q Consensus 705 --~~~~k~kA~~l 715 (732)
+++..+--..+
T Consensus 296 ~~Dedl~edl~~L 308 (312)
T PF03224_consen 296 WSDEDLTEDLEFL 308 (312)
T ss_dssp -SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 56666554443
No 39
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.84 E-value=1.3e-09 Score=85.09 Aligned_cols=44 Identities=30% Similarity=0.666 Sum_probs=31.8
Q ss_pred CccccccCcccCCCceec-CCCcccchHHHHHHHhc-CCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDH-GLNICPKTR 281 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~~~ 281 (732)
-.|.||||+..|+|||.- .|||+|||++|..|+.. +...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999984 89999999999999943 446799976
No 40
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.8e-07 Score=106.03 Aligned_cols=257 Identities=19% Similarity=0.137 Sum_probs=197.5
Q ss_pred CchHHHHHHHhcCC-CHHHHHHHHHHHHHHhc-cChhhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhhcC-Cc
Q 004761 444 TPYVKKLIEDLNST-SNEIQASAAAELRLLAK-HNMENRMIIGNCGAIPPLLSLLYSE-AQLTQEHAVTALLNLSIN-DE 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~-~~~~~r~~i~~~G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~-~~ 519 (732)
.+.+.+|++.|... ++..|.+|+.+|+.+.. .+++.-.-+--.-.+|.|+.+|++. +.+++-.|+++|.+|+.. +.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 44678899999876 78888999999987653 3333222222336899999999874 799999999999999864 67
Q ss_pred hHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
....+++.++++.|+.-|. -...++.+.++-+|..++... -..|...|++-..+.+|.--+..+++.|+.+..|+|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777889999999996554 456889999999999998633 3556778999999998887778899999999999997
Q ss_pred C--chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC----ChhhHHHHHHcCcHHHHHHHHhcC----CHHHH
Q 004761 599 F--HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST----VGEGRLAIAREGGIPSLVEVVESG----SQRGK 667 (732)
Q Consensus 599 ~--~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~----~~~~r~~i~~~~~I~~Lv~lL~~~----s~~~~ 667 (732)
. ++.-..+. .++|.|..+| ..+...++.++-++..++. .++--+.+...|.|....+++.-. +..+.
T Consensus 324 si~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 4 33333333 4899999999 6677778888877777754 233346677788888888887542 23345
Q ss_pred HHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC
Q 004761 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG 704 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g 704 (732)
...+..|..+|.+++-....+.+.++...|..+++..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 5677888888888899899999999999999998754
No 41
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.72 E-value=7.8e-09 Score=74.62 Aligned_cols=38 Identities=32% Similarity=0.773 Sum_probs=33.3
Q ss_pred cccCcccCCCc-eecCCCcccchHHHHHHHhcCCCCCCCC
Q 004761 242 CPLSLELMIDP-VIVASGQTYERVFIQKWLDHGLNICPKT 280 (732)
Q Consensus 242 Cpi~~~lm~dP-V~~~~g~ty~r~~I~~~~~~~~~~cP~~ 280 (732)
|||+++.+.|| |+++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 5899986
No 42
>PRK09687 putative lyase; Provisional
Probab=98.63 E-value=1.6e-06 Score=91.31 Aligned_cols=165 Identities=18% Similarity=0.083 Sum_probs=128.1
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
-.++.|..+|.+.+..++..|+.+|..+. ....++.+..+++++++..|..|+++|..|-..+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 35788999999999999999999997664 245678888899999999999999999998653321
Q ss_pred hcchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHH
Q 004761 567 RSGAVKALVDL-LGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 567 ~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
...+++.|..+ +++.++.++..|+.+|.+++....+. ...++..+...+ +++..++..++..|..+.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------- 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------- 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------
Confidence 22467888877 67778999999999999996543221 122555666667 778888888888886542
Q ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
...+++.|+.++.+.++.++..|+.+|..+...
T Consensus 157 ---~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 157 ---DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC
Confidence 223789999999999999999999999987543
No 43
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.58 E-value=2.4e-08 Score=73.04 Aligned_cols=36 Identities=25% Similarity=0.610 Sum_probs=23.4
Q ss_pred cccCcccCCC----ceecCCCcccchHHHHHHHhcC---CCCCC
Q 004761 242 CPLSLELMID----PVIVASGQTYERVFIQKWLDHG---LNICP 278 (732)
Q Consensus 242 Cpi~~~lm~d----PV~~~~g~ty~r~~I~~~~~~~---~~~cP 278 (732)
||||.+ |.+ |++++||||||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 34577
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=5.1e-05 Score=86.11 Aligned_cols=269 Identities=17% Similarity=0.194 Sum_probs=199.4
Q ss_pred CchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCc-
Q 004761 444 TPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDE- 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~- 519 (732)
...|+.|+..+.+. -.+.++.|++.|..+++ ..|..++. -|+++|+..|.. .|+++...++.++.++...++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 35689999988754 47889999999999996 46766664 568889999975 479999999999999866542
Q ss_pred ------hH----------HHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC--chhHHHHHhc-chHHHHHHhhc
Q 004761 520 ------NK----------AMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL--EEYKAKIGRS-GAVKALVDLLG 579 (732)
Q Consensus 520 ------~k----------~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~-g~i~~Lv~lL~ 579 (732)
.+ ..+. ..+.+..++..+...+..+|..+.-.|.++... .+.+..+... -+|..|+.+|+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 12 1222 467889999999999999999999999998664 3556666655 88999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc--C--CC-hHHHHHHHHHHHHHhCCh-hhHHHHHHcCcH
Q 004761 580 SGTLRGRKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM--D--PS-TGMVDKAVALLANLSTVG-EGRLAIAREGGI 652 (732)
Q Consensus 580 ~~~~~~~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL--~--~~-~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I 652 (732)
+....++-.|+..|..|+....+..++|. .++...|+.++ . .+ .-+++.|+.+|-||.... .++.-+.+.+-|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 98888999999999999998888887776 89999999999 2 12 357899999999998754 466666777789
Q ss_pred HHHHHHHhc---CCH-------H---HHHHHHHHHHHHhc-CCh-----HhHHHHHhCCCHHHHHHchhcCC-h-HHHHH
Q 004761 653 PSLVEVVES---GSQ-------R---GKENAASILLQLCL-HSP-----KFCTLVLQEGAVPPLVGLSQSGT-P-RAKEK 711 (732)
Q Consensus 653 ~~Lv~lL~~---~s~-------~---~~e~A~~~L~~L~~-~~~-----~~~~~v~~~G~i~~L~~Ll~~g~-~-~~k~k 711 (732)
|.|.++|.. ++. . ....|+.++..+.. +++ .++..+...+++..|+.++.+.. | .+...
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988743 221 1 12334455554443 221 13346667899999999887763 3 44444
Q ss_pred HHHHH
Q 004761 712 AQQLL 716 (732)
Q Consensus 712 A~~lL 716 (732)
+.-.+
T Consensus 337 siitv 341 (970)
T KOG0946|consen 337 SIITV 341 (970)
T ss_pred HHHHH
Confidence 44333
No 45
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.4e-05 Score=82.42 Aligned_cols=228 Identities=19% Similarity=0.210 Sum_probs=162.0
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHH
Q 004761 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLI 534 (732)
Q Consensus 456 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv 534 (732)
+.+.+.+..|+..|..++ ++..|-.-+...|+..+++.++.+.+..+++.|+++|...+.+ +..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 456788899999999998 5568888999999999999999999999999999999999876 56788999999999999
Q ss_pred HHHcCCC-HHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcC--CCHHHHHHHHHHHHHhccCch-hHHHHHhh
Q 004761 535 HVLKSGN-GGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGS--GTLRGRKDAATALFNLSIFHE-NKARIIQA 609 (732)
Q Consensus 535 ~lL~~~~-~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~Al~aL~nLs~~~~-n~~~lv~~ 609 (732)
..|.+.+ .+++..|+.++.+|..+. .....+...++...|...|.+ .+...+..|+..+..|..... ....+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9998654 667799999999998754 445666666779999999998 468889999999999987544 33444445
Q ss_pred chHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHH-----cCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCh
Q 004761 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAR-----EGGIPSLVEVVE-SGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 610 G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~-----~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
|....+..+. ..+....+.++..+..+...-..+..+.. ...+....+.+. +.....+..-+.-++..|...+
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~ 332 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVP 332 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 6666666665 44555566666555444332211111111 112333333333 2233455556666777777554
Q ss_pred Hh
Q 004761 683 KF 684 (732)
Q Consensus 683 ~~ 684 (732)
..
T Consensus 333 ~~ 334 (342)
T KOG2160|consen 333 SI 334 (342)
T ss_pred HH
Confidence 43
No 46
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.47 E-value=1.1e-07 Score=69.33 Aligned_cols=39 Identities=38% Similarity=0.890 Sum_probs=36.1
Q ss_pred cccCcccCCCce-ecCCCcccchHHHHHHHh-cCCCCCCCC
Q 004761 242 CPLSLELMIDPV-IVASGQTYERVFIQKWLD-HGLNICPKT 280 (732)
Q Consensus 242 Cpi~~~lm~dPV-~~~~g~ty~r~~I~~~~~-~~~~~cP~~ 280 (732)
|||+++.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 566789986
No 47
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.47 E-value=2e-05 Score=84.01 Aligned_cols=268 Identities=17% Similarity=0.116 Sum_probs=196.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHH----HHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIP----PLLSLLYS-EAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~----~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
...+..|..++.-.+..+.+.+..++..+... .+.+... .|-..+.+ .+.....-|+++|..+...++.|-
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 56778888888777777888888887554321 1111222 23334444 677788889999999999999999
Q ss_pred HHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHHhccC
Q 004761 523 MIAEAGAIEPLIHVLK--SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIF 599 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~ 599 (732)
.+..++++..++..+- ..+...+....-+++-|+.++...+.+...+.|+.|.+++++.. ..+.+-.+.++.|+...
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998883 23578999999999999999888888866799999999999764 67888899999999887
Q ss_pred c-------hhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHH-------HHhCCh----------------------
Q 004761 600 H-------ENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLA-------NLSTVG---------------------- 640 (732)
Q Consensus 600 ~-------~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~-------nLa~~~---------------------- 640 (732)
+ +....|+..++.+.+-.+. -+++++.+..-.+-. .|++..
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 6 3445666666666554444 345555443322222 223221
Q ss_pred --hhHHHHHHcC--cHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHH
Q 004761 641 --EGRLAIAREG--GIPSLVEVVESGS-QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQL 715 (732)
Q Consensus 641 --~~r~~i~~~~--~I~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~l 715 (732)
++...+-+.+ .+..|+++|+..+ |..-.-|+.=+....++-|+....+.+.|+=..++.|+.+.++++|-.|..+
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 2223333333 4788899998754 6677778888899999999999999999999999999999999999999887
Q ss_pred HHHh
Q 004761 716 LSHF 719 (732)
Q Consensus 716 L~~l 719 (732)
++.|
T Consensus 433 vQ~l 436 (442)
T KOG2759|consen 433 VQKL 436 (442)
T ss_pred HHHH
Confidence 7655
No 48
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=7.5e-05 Score=76.74 Aligned_cols=270 Identities=18% Similarity=0.176 Sum_probs=183.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
....+|++|.+.+|.++..|+..+-.++.. ..+..... .-.++.+..++...++ .+.|+++|.|++.++.-+..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 356799999999999999999888888765 23332222 2467778888876666 788999999999998888877
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh-------cchHHHHHHhhcCC-CH-HHHHHHHHHHHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR-------SGAVKALVDLLGSG-TL-RGRKDAATALFN 595 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-------~g~i~~Lv~lL~~~-~~-~~~~~Al~aL~n 595 (732)
+.. .++.+++.+-+........++.+|.||+..++....+.. .|.+.....+.+.+ +. .-...-+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 776 788888888877666677888899999987765444331 34555555555543 21 234456678889
Q ss_pred hccCchhHHHHHhhchHHH--HHHhcCCChHHH-HHHHHHHHHHhCChhhHHHHHHcC--cHHHHH--------------
Q 004761 596 LSIFHENKARIIQAGAVKH--LVDLMDPSTGMV-DKAVALLANLSTVGEGRLAIAREG--GIPSLV-------------- 656 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~--Ll~lL~~~~~l~-e~al~iL~nLa~~~~~r~~i~~~~--~I~~Lv-------------- 656 (732)
|+.....|..+.....++. ++.+-+.+..++ ...+++|.|.|........+...+ .+|.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999988888777553322 222223233332 346788888888766665555421 122222
Q ss_pred -------HHHh-----cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhc
Q 004761 657 -------EVVE-----SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 657 -------~lL~-----~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~ 721 (732)
+++. ..++..+..-+.+|+.||. ....++.+.+.|+.+.|-.+=... ++..++++-.+..++-+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2331 2457778889999999999 556777788888888777766654 36777777777776644
No 49
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.1e-07 Score=93.45 Aligned_cols=56 Identities=25% Similarity=0.651 Sum_probs=51.4
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCCCCCCcccH
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l~pn~ 293 (732)
..|-|-||+++-+|||++.|||-||=.||.+|++. +...||+|+...+.+.++|-|
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 58999999999999999999999999999999974 345689999999999999976
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.43 E-value=2.8e-05 Score=95.20 Aligned_cols=59 Identities=25% Similarity=0.243 Sum_probs=38.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNL 514 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nL 514 (732)
..++.|++.|.++++.+++.|+..|..+.. .++++.|+..|++++..++..|+.+|..+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345667777777777777777777665531 24566666666666666776666666555
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.42 E-value=3e-05 Score=94.95 Aligned_cols=215 Identities=20% Similarity=0.197 Sum_probs=151.7
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
....++.|++.|+.+++.++..|+..|..+.... ...+.|...|.++++.++..|+.+|..+..
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------ 713 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRA------ 713 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 3556677888887778888888877777664211 223567777777888888888888776542
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
+....|+..|.+.++.+|..|+.+|..+. ..+.|..++.+.++.++..++.+|..+....
T Consensus 714 -----~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-- 773 (897)
T PRK13800 714 -----GDAALFAAALGDPDHRVRIEAVRALVSVD-------------DVESVAGAATDENREVRIAVAKGLATLGAGG-- 773 (897)
T ss_pred -----CCHHHHHHHhcCCCHHHHHHHHHHHhccc-------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--
Confidence 22345667788888888888887777642 1245667777888888888888887775421
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.+.++.|..++ +++..++..|+..|..+...+ ..+..+...+.+.++.++..|+.+|..+..
T Consensus 774 ------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-- 836 (897)
T PRK13800 774 ------APAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA-- 836 (897)
T ss_pred ------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc--
Confidence 22367777777 777778888888887763321 123557777888888888888888876532
Q ss_pred hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
...++.|..++.+.+..+|..|...|..+
T Consensus 837 ---------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 837 ---------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ---------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 23469999999999999999999999876
No 52
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.41 E-value=4.5e-05 Score=84.02 Aligned_cols=216 Identities=14% Similarity=0.154 Sum_probs=161.3
Q ss_pred CchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhc-----CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 444 TPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNC-----GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 444 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-----G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
...+..++..|+. ..++.....+..+..+...++..-..+.+. ....+++.+|..+|.-++..|..+|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 3556778888864 456778889999999988876554555543 4567778899888999999999999888543
Q ss_pred -CchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC--CHHHHHHHHHHH
Q 004761 518 -DENKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG--TLRGRKDAATAL 593 (732)
Q Consensus 518 -~~~k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~Al~aL 593 (732)
..+.......-.+..|...|+++ +...+..++.+|..|...+.+|..+...++++.|+.+|+.. +.+....++.++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 22211111111344556666654 36778888899999999999999998888999999999863 468899999999
Q ss_pred HHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChh-------hHHHHHHcCcHHHHHHHHh
Q 004761 594 FNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGE-------GRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 594 ~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~-------~r~~i~~~~~I~~Lv~lL~ 660 (732)
+-|+.+++....+...|.++.|++++ .....++.-++++|.||...+. ....+++.|. +.+++.|.
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~ 286 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLE 286 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHh
Confidence 99999988777888899999999999 6677889999999999987431 2244555544 44555553
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.1e-05 Score=82.91 Aligned_cols=181 Identities=20% Similarity=0.165 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc
Q 004761 541 NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 541 ~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL 619 (732)
+.+-++.|..-|..+..+-+|...+...|++.+++.++.+.+...++.|+.+|...+.++ ..+..+++.|+.+.|+..+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 567777888888888877788888999999999999999999999999999999999865 5778899999999999999
Q ss_pred --CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCH
Q 004761 620 --DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVES--GSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694 (732)
Q Consensus 620 --~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i 694 (732)
+.+.....+|+.+++.|-++ +.|...+...+|...|...+.+ .+...+..|+..+..+..........+...|..
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 55666779999999999875 4688899999999999999988 577889999999999988777777777778888
Q ss_pred HHHHHchhcCChHHHHHHHH-HHHHhhc
Q 004761 695 PPLVGLSQSGTPRAKEKAQQ-LLSHFRN 721 (732)
Q Consensus 695 ~~L~~Ll~~g~~~~k~kA~~-lL~~l~~ 721 (732)
..+..+..+.+..+++.|.. +|..+..
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 88888888888777777765 3444433
No 54
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.39 E-value=1.2e-07 Score=74.11 Aligned_cols=58 Identities=17% Similarity=0.429 Sum_probs=33.5
Q ss_pred ccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMI 299 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i 299 (732)
-++|++|.++|++||.+ .|.|+||+.||.+.+.. .||+|+.|-...++.-|..|-++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 36899999999999975 79999999999886653 499999999999999999998876
No 55
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.37 E-value=2.5e-07 Score=70.70 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=40.8
Q ss_pred CccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
+++.|+||++-+.++++++|||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999994 478999999864
No 56
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.9e-06 Score=93.52 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=126.8
Q ss_pred cchHHHHHHhhcCC-CHHHHHHHHHHHHHhcc-CchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 568 SGAVKALVDLLGSG-TLRGRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 568 ~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
.-++|.|+.+|++. +.++...|++||.+|+. .+.....+|+.++||.|++-| -..-++.|+++.+|..|++.. -
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~ 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--P 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--c
Confidence 35789999999975 58999999999999997 788899999999999999988 456788999999999998743 3
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
.++.++|++...+.++.--+..++..|+++..|+|.. .++.-..+++ ++|.|..+++..+.+.-+.+..++..+-+.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 5788999999999999888889999999999999985 3444445554 599999999999988888777766655443
No 57
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.35 E-value=3.3e-07 Score=92.58 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=41.6
Q ss_pred CCCccccccCcccCCCc--------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDP--------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dP--------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
...+..||||++.+.+| |+.+|||+||+.||.+|+.. +.+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 45678999999987764 56789999999999999975 479999998875
No 58
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.34 E-value=2.1e-07 Score=94.92 Aligned_cols=65 Identities=22% Similarity=0.433 Sum_probs=60.0
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWC 303 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 303 (732)
+-++|-||.+.|+-||+++||||||--||.+++... +.||.|..++....|.-|.-|-.+|+.+-
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 457899999999999999999999999999999875 88999999999999999999999988773
No 59
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.32 E-value=5.6e-05 Score=87.27 Aligned_cols=251 Identities=21% Similarity=0.234 Sum_probs=159.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.+..+.+.|.++++..+-.|++.|.++.. ++... -.++.+..++.++++.++..|+.++..+...... .+.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHH
Confidence 36778889999999999999999999872 23222 2577888999999999999999999988653221 111
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHh-ccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSL-SVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKA 604 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~ 604 (732)
.. .++.+..+|.+.++.++..|+.++..+ ...+... -.-...+..|..++...++-.+...+..|..++.......
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 22 588899999888999999999999998 2111111 0111344555555566777777777777777766443222
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
.- ..+++.+..++ +.+..+.-.|+.++..+...+. .-..+++.|++++.+.++..+..++..|..++...+.
T Consensus 228 ~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 228 DK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred hH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence 11 45666666666 5556666666676666665544 2223566677777766666777777777777764421
Q ss_pred hHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 684 FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 684 ~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.+. .....+..+..+.+..+|.+|..+|..+.
T Consensus 301 ----~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 301 ----AVF-NQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp ----HHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred ----hhh-hhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 222 22222333333555666666666665553
No 60
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.28 E-value=7.9e-05 Score=86.01 Aligned_cols=253 Identities=16% Similarity=0.162 Sum_probs=170.6
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+..++.+.+.+.++++.++..|+.++..+.+.+++. +... .++.+..+|.+.++.++..|+.++..+..++.....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~ 188 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh
Confidence 345677888899999999999999999999776542 2222 688999999999999999999999988111111011
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.-...+..|..++...++-.+..++.+|..++........- ...++.+..++++.++.+...|+.++.++.....
T Consensus 189 -~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 189 -LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp -HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred -hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 11234555556667778888888999888887644332211 4567888888887778888888888888877655
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.-..+++.|..++ +.+.+++-.++..|..++... .. .+. .....+..+. +.+...+..++.+|..++.
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~-~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-- 333 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PP-AVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN-- 333 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HH-HHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH----
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--ch-hhh--hhhhhhheecCCCChhHHHHHHHHHhhccc--
Confidence 4456788888888 777788888888888887754 12 222 2333344454 6777888888888888886
Q ss_pred hHhHHHHHhCCCHHHHHHchh-cCChHHHHHHHHHHHHhh
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQ-SGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~ 720 (732)
+++... +++.|...+. ..++..++.+...+..+.
T Consensus 334 ~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 334 ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 233333 3455555553 335556666655555443
No 61
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.2e-07 Score=85.37 Aligned_cols=53 Identities=23% Similarity=0.531 Sum_probs=45.9
Q ss_pred CccccccCcccCCCce--ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 238 PYFRCPLSLELMIDPV--IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV--~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
.-|.||||++-+..=| .+.|||.||+.||+.-++.+ .+||.|+.+++++.+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 3589999999987655 46899999999999999987 68999999998887765
No 62
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.25 E-value=1.1e-05 Score=73.08 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=115.3
Q ss_pred CCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 487 GAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565 (732)
Q Consensus 487 G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 565 (732)
+.+..|+.-.. ..+.+.+++.+.-|.|.+.++.|-..+.+.++++.++..|...+....+.+.+.|+|++....|+..|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 34555665443 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL 619 (732)
.+.+++|..+..+.+........|+.+++.|+... ..+..+..-.+|..+.++-
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 99999999999999988889999999999999865 4566777766666665553
No 63
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7e-07 Score=95.59 Aligned_cols=70 Identities=24% Similarity=0.487 Sum_probs=60.9
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
.-+++.||||++.|++|++++|||+||+.||..|+. +...||.|+. . ...+.||..+.+++......+..
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCCc
Confidence 457899999999999999999999999999999999 6678999996 2 33788999999999988877643
No 64
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.19 E-value=1.6e-06 Score=64.10 Aligned_cols=44 Identities=39% Similarity=0.872 Sum_probs=39.3
Q ss_pred ccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.||||++.+.+|+.+. |||+|++.|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999876 9999999999999998778899998753
No 65
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.16 E-value=8.4e-07 Score=65.83 Aligned_cols=40 Identities=35% Similarity=0.787 Sum_probs=33.8
Q ss_pred ccccCcccCC---CceecCCCcccchHHHHHHHhcCCCCCCCCC
Q 004761 241 RCPLSLELMI---DPVIVASGQTYERVFIQKWLDHGLNICPKTR 281 (732)
Q Consensus 241 ~Cpi~~~lm~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~ 281 (732)
.||||++-|. .++.++|||+|.+.||.+|+... .+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999994 56668999999999999999875 6999985
No 66
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.14 E-value=1.7e-05 Score=71.86 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=127.2
Q ss_pred cchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHH
Q 004761 568 SGAVKALVDLLGS-GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLA 645 (732)
Q Consensus 568 ~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~ 645 (732)
.+-+..||.=..+ .+.++++....-|.|.+..+-|-..+.+..++...++-| ..+..+++.+.+-|+|+|-.+.+..-
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3556666665554 578899999999999999999999999999999999999 78889999999999999999999999
Q ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHH
Q 004761 646 IAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718 (732)
Q Consensus 646 i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 718 (732)
|.+++|+|.++..+.+....+...|+..|..||-.+...+.++....++..+...-.+...+.+.-|...|.-
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999888899999999999999888888888877777777766655555555555555543
No 67
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.12 E-value=0.00029 Score=79.01 Aligned_cols=248 Identities=17% Similarity=0.099 Sum_probs=165.8
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHH
Q 004761 457 TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIH 535 (732)
Q Consensus 457 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~ 535 (732)
.+......|+-++..++..-..-|.-+....++.+|+.+|..++..++..++.+|.|+... .+.|..+.+.|+++.+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 3455667777788888765444455555667899999999888999999999999999876 667999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHhccCchhHHHHH--hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhh--c
Q 004761 536 VLKSGNGGAKENSAAALFSLSVLEEYKAKIG--RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQA--G 610 (732)
Q Consensus 536 lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~--G 610 (732)
.+.+.+...+.++.|+|.++....+...... +.-....++.+..+.++.+++.++..|.||..+. +.-..+++. .
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~ 548 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKD 548 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhH
Confidence 9999999999999999999998776544332 3333477888899999999999999999998764 344444442 2
Q ss_pred hHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHH---HH-----hcCCHHHHHHHHHHHHHHhcC
Q 004761 611 AVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE---VV-----ESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 611 ~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~---lL-----~~~s~~~~e~A~~~L~~L~~~ 680 (732)
++......+ .....+.......+.++....++...-.-.|-.+.++- .+ .+.......+++|.+.++...
T Consensus 549 ~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~ 628 (678)
T KOG1293|consen 549 VLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTT 628 (678)
T ss_pred HHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCC
Confidence 333333333 33334445555555555444443322222232222222 22 223455677888999988774
Q ss_pred --ChHhHHHHH-hCCCHHHHHHchhcC
Q 004761 681 --SPKFCTLVL-QEGAVPPLVGLSQSG 704 (732)
Q Consensus 681 --~~~~~~~v~-~~G~i~~L~~Ll~~g 704 (732)
..+....+. ..|+......+..++
T Consensus 629 ~s~s~~dr~~~~~n~i~e~~~k~~~sd 655 (678)
T KOG1293|consen 629 DSSSNFDRSNLKLNCIWELNNKLWNSD 655 (678)
T ss_pred CCCcccchhhccccceechhhhcccch
Confidence 223334444 345555554444443
No 68
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.11 E-value=1.6e-06 Score=86.79 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=59.0
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCE 304 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~ 304 (732)
-++|-||.+-++-|++++||||||.-||.+|+... +.||+|+.+....-+.-+..++..++.+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 56899999999999999999999999999999875 899999999988888888888888887754
No 69
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.06 E-value=3.7e-06 Score=59.85 Aligned_cols=39 Identities=46% Similarity=0.976 Sum_probs=36.1
Q ss_pred cccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCC
Q 004761 242 CPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKT 280 (732)
Q Consensus 242 Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~ 280 (732)
|||+++..++|++++|||.|+..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998666789986
No 70
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.03 E-value=0.00026 Score=76.00 Aligned_cols=260 Identities=19% Similarity=0.185 Sum_probs=180.8
Q ss_pred ccCchHHHHHHHhcCCCHHH--HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCC
Q 004761 442 TTTPYVKKLIEDLNSTSNEI--QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~~~~~--~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~ 518 (732)
-..+.+..|++++.+++.+. +.+|.+.|-.+.. .+||..++..| ...++.+-+ ...++.+...+.+|.++-.+.
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 34667789999999988765 7788888887764 37899999876 444444443 356788888899999998874
Q ss_pred -chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 519 -ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 519 -~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
+....+++.|+++.++-..+..++.+..+++-+|.|.+.+. +.+..+.+..+-+-|.-+..+.+.-.+..|+.|..-
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 45778889999999998888889999999999999998754 457777777777888877777777778889999999
Q ss_pred hccCchhHHHHHhhchHH---HHHHhcCCChHHHHHHHHHHHHHhCChhhHHHHHH---cCcHHHHHHHHhcCCHHHHHH
Q 004761 596 LSIFHENKARIIQAGAVK---HLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAR---EGGIPSLVEVVESGSQRGKEN 669 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~---~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r~~i~~---~~~I~~Lv~lL~~~s~~~~e~ 669 (732)
|+.+.+.-..+-+.|-+. +++..+++.. .++ +. ....+ .+.+..|+-+|++.--+ ..
T Consensus 334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~~------------FAR--D~-hd~aQG~~~d~LqRLvPlLdS~R~E--Aq 396 (832)
T KOG3678|consen 334 LATNKEVEREVRKSGTLALVEPLVASLDPGR------------FAR--DA-HDYAQGRGPDDLQRLVPLLDSNRLE--AQ 396 (832)
T ss_pred hhhhhhhhHHHhhccchhhhhhhhhccCcch------------hhh--hh-hhhhccCChHHHHHhhhhhhcchhh--hh
Confidence 988877655566666443 3333332211 111 00 01111 12478888888743333 33
Q ss_pred HHHHHHHHhcC----ChHhHHHHH-hCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 670 AASILLQLCLH----SPKFCTLVL-QEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 670 A~~~L~~L~~~----~~~~~~~v~-~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
++++. .+|.. .......+. +-|+|..|..+..+.+.-+.+-|.++|..+-+.
T Consensus 397 ~i~AF-~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 397 CIGAF-YLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred hhHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 44443 34431 222333343 569999999999877777777888899888654
No 71
>PF05536 Neurochondrin: Neurochondrin
Probab=98.03 E-value=0.00034 Score=80.43 Aligned_cols=231 Identities=16% Similarity=0.098 Sum_probs=161.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh---HHHHHhcCCHHHHHHhhcc-------CCHHHHHHHHHHHHHh
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMEN---RMIIGNCGAIPPLLSLLYS-------EAQLTQEHAVTALLNL 514 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~---r~~i~~~G~I~~Lv~lL~s-------~~~~v~~~A~~~L~nL 514 (732)
..+.+.++.|++.+++.+..++-.+..+.+.++.+ ++.+.++=+...|-++|++ +....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35788999999999888889999999999877643 4457787667889999986 2356788999999999
Q ss_pred hcCCchH--HHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHH
Q 004761 515 SINDENK--AMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAAT 591 (732)
Q Consensus 515 s~~~~~k--~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~ 591 (732)
+.+++.. ..+. +.+|.|+.++.+.+. ++...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+...+.|+.
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 9876653 3333 459999999988876 99999999999999999999999999999999999987 5677899999
Q ss_pred HHHHhccCchhHHHHHh----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh--HHHHHHcCcH----HHHHHHHh
Q 004761 592 ALFNLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG--RLAIAREGGI----PSLVEVVE 660 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~--r~~i~~~~~I----~~Lv~lL~ 660 (732)
+|.+++........--. ..+++.+...+ .......-..+..|..+-...+. .........+ .-+..+++
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 99998775432111000 13445555555 33444566678888877554421 1111122223 33333444
Q ss_pred c-CCHHHHHHHHHHHHHHh
Q 004761 661 S-GSQRGKENAASILLQLC 678 (732)
Q Consensus 661 ~-~s~~~~e~A~~~L~~L~ 678 (732)
+ ..+..+..|..+...|.
T Consensus 242 sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLL 260 (543)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 4 35555655554444443
No 72
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.2e-06 Score=84.83 Aligned_cols=53 Identities=23% Similarity=0.464 Sum_probs=47.4
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLI 290 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 290 (732)
+..+.|-||++-++||--++|||.||=+||..|..+. .-||.||+++.+..++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCccee
Confidence 4579999999999999999999999999999999875 5699999998876654
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=97.97 E-value=0.00019 Score=82.51 Aligned_cols=188 Identities=20% Similarity=0.205 Sum_probs=135.9
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCch----hHHHHHhcchHHHHHHhhcCC-------CHHHHHHHHHHHHHhc
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLEE----YKAKIGRSGAVKALVDLLGSG-------TLRGRKDAATALFNLS 597 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~-------~~~~~~~Al~aL~nLs 597 (732)
.++..+.+|+..+.+-|-.++..+.++...++ .+..|.+.-+.+.|-.||+++ ....+..|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46777889998887778888888888876443 234566664468888999873 2455677899999999
Q ss_pred cCchhH--HHHHhhchHHHHHHhc-CCCh-HHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHH
Q 004761 598 IFHENK--ARIIQAGAVKHLVDLM-DPST-GMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASI 673 (732)
Q Consensus 598 ~~~~n~--~~lv~~G~V~~Ll~lL-~~~~-~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~ 673 (732)
..++.. .+++ +.||.|++.+ ..+. .++..|+.+|..++.+++|+.++.+.|+++.|++.+.+ .+...+.|+.+
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 977654 3444 5899999999 5444 89999999999999999999999999999999999987 66779999999
Q ss_pred HHHHhcCChHhHHHHH---hCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 674 LLQLCLHSPKFCTLVL---QEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 674 L~~L~~~~~~~~~~v~---~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
|.+++.........-. -..+++.|...........|-.+..+|..|
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 9999885332111100 013445555555544444444444444444
No 74
>PHA02926 zinc finger-like protein; Provisional
Probab=97.96 E-value=8.9e-06 Score=79.46 Aligned_cols=55 Identities=15% Similarity=0.338 Sum_probs=43.3
Q ss_pred CCCccccccCcccCCC---------ceecCCCcccchHHHHHHHhcC-----CCCCCCCCCCCCCCCCccc
Q 004761 236 IPPYFRCPLSLELMID---------PVIVASGQTYERVFIQKWLDHG-----LNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d---------PV~~~~g~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~~~l~pn 292 (732)
...+..|+||++...+ ++..+|||+||..||.+|.... ...||.||+.+. .++|+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 4678899999998754 4667999999999999999742 356999999865 34443
No 75
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00073 Score=80.41 Aligned_cols=231 Identities=18% Similarity=0.142 Sum_probs=154.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
..+.+=..|.+.++..+..|+.+|..++.+..+.-.... ...++..++.|+++++.++..|+.+++.++.+ ...-..-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 345666788899999999999999999876654322211 25677888889999999999999999999987 3333444
Q ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHh--cchHH-HHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 525 AEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGR--SGAVK-ALVDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~-~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
...-.++.|+..+.+. ++.++.+|+.+|.+++..-. +..+.. .+.+. .+..++.++++.+++.++.+|...+...
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 4455666788888764 68999999999999886332 333332 26666 3444556778999999999999988765
Q ss_pred hhHHHHHhhchHHHHHHhc-CC-ChHHHH---HHHHHHHHHhCChhhHHHHHHc--CcHHHHHHH---HhcCCHHHHHHH
Q 004761 601 ENKARIIQAGAVKHLVDLM-DP-STGMVD---KAVALLANLSTVGEGRLAIARE--GGIPSLVEV---VESGSQRGKENA 670 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL-~~-~~~l~e---~al~iL~nLa~~~~~r~~i~~~--~~I~~Lv~l---L~~~s~~~~e~A 670 (732)
+..-.=.-.-.+|.|..+| .. +.+..+ +...++..++. ..|++.+... ..+..+..+ ....+...+++-
T Consensus 507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-HhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 5554444467888888888 22 233333 33333332222 3455555542 134444444 222345567777
Q ss_pred HHHHHHHhc
Q 004761 671 ASILLQLCL 679 (732)
Q Consensus 671 ~~~L~~L~~ 679 (732)
...-.++|+
T Consensus 586 ~~~warmc~ 594 (1075)
T KOG2171|consen 586 IAFWARMCR 594 (1075)
T ss_pred HHHHHHHHH
Confidence 777778887
No 76
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0042 Score=71.10 Aligned_cols=246 Identities=17% Similarity=0.107 Sum_probs=187.2
Q ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCh------hhH-----------HHHHhcCCHHHHHHhhccCCHHHHHH
Q 004761 446 YVKKLIEDLNS--TSNEIQASAAAELRLLAKHNM------ENR-----------MIIGNCGAIPPLLSLLYSEAQLTQEH 506 (732)
Q Consensus 446 ~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~------~~r-----------~~i~~~G~I~~Lv~lL~s~~~~v~~~ 506 (732)
.++.|++-|.. .+++....++..+..+..+.+ ..+ ..|...+.|..|+.++...|.-++..
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~ 141 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY 141 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence 35778888864 367888899999998886652 111 12334589999999999999999999
Q ss_pred HHHHHHHhhcC--CchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCCC
Q 004761 507 AVTALLNLSIN--DENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSGT 582 (732)
Q Consensus 507 A~~~L~nLs~~--~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~ 582 (732)
++..|.++-.. .+.+..+. .+-++..|+.+|.+....+|-.+...|..|.....+...++.. .++..|+.++....
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988544 34566555 5789999999999888889999999999998877666666554 89999999998632
Q ss_pred ----HHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc----CCCh--------H--HHHHHHHHHHHHhCCh---
Q 004761 583 ----LRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM----DPST--------G--MVDKAVALLANLSTVG--- 640 (732)
Q Consensus 583 ----~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL----~~~~--------~--l~e~al~iL~nLa~~~--- 640 (732)
.-+..+|+..|.||..++ .|+..+.+.+-+|.|..+| ..+. . -+..++.++..|+.-.
T Consensus 222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~ 301 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS 301 (970)
T ss_pred CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 246889999999999865 5888899999999999888 1221 1 2345777777776521
Q ss_pred ----hhHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHhHHHHHhC
Q 004761 641 ----EGRLAIAREGGIPSLVEVVESG--SQRGKENAASILLQLCLHSPKFCTLVLQE 691 (732)
Q Consensus 641 ----~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~v~~~ 691 (732)
.++.++...+++..|..++.+. ..++...++-++.++.+++..++..+.+.
T Consensus 302 ~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 302 SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADV 358 (970)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence 2345667788899999977553 55678888888999999888888888753
No 77
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00013 Score=83.63 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=49.3
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
.-+.||.|..=.+|-||+.|||.||-.||+.-+......||.|+.+|..-++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 347899999999999999999999999999999988889999999998777765
No 78
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.90 E-value=1.6e-05 Score=82.70 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=47.1
Q ss_pred CccccccCccc-CCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC----CcccHHHHHHH
Q 004761 238 PYFRCPLSLEL-MIDPV----IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN----LIPNYTVKAMI 299 (732)
Q Consensus 238 ~~f~Cpi~~~l-m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~----l~pn~~l~~~i 299 (732)
++..||+|+.- +-.|= +-+|||+||++||.++|..|...||.|+.++.... +.++..+.+.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 56789999983 44553 22699999999999999888789999999998766 44555554444
No 79
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.88 E-value=0.0007 Score=76.09 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=121.1
Q ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
++..+.+.-....+.......+...+..|+-++.+++.. ..-+.......++.+||+++..++..+...++.+|.||..
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 444444443333333333334444544444444444431 1222223344788999999999999999999999999987
Q ss_pred -CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHH--HHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 599 -FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRL--AIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 599 -~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~--~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
+.+-+..+++.|+|..+.+++ +.+.++...++++|.++....+... +...-=+-..++.++.+++..++|.|...|
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 677899999999999999999 8888999999999999987655332 222222456677888899999999999999
Q ss_pred HHHhcCChHhHHHHHh
Q 004761 675 LQLCLHSPKFCTLVLQ 690 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~ 690 (732)
.||..+..+....+++
T Consensus 529 RNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 529 RNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHhhcCcHHHHHHHHH
Confidence 9999876555554443
No 80
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0039 Score=74.38 Aligned_cols=271 Identities=19% Similarity=0.215 Sum_probs=158.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhh----ccCCHHHHHHHHHHHHHhhcCCc-h
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLL----YSEAQLTQEHAVTALLNLSINDE-N 520 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL----~s~~~~v~~~A~~~L~nLs~~~~-~ 520 (732)
.+.+.+.+..++..++..|++++..++...+.++...... ..+|.++..+ ..+|.+....++.+|..|..... .
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 4455566776666689999999998887664333333322 3566555554 44566666666666666543321 1
Q ss_pred -HHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhccCc--------------------------------------
Q 004761 521 -KAMIAEAGAIEPLIHVLKSG--NGGAKENSAAALFSLSVLE-------------------------------------- 559 (732)
Q Consensus 521 -k~~i~~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~-------------------------------------- 559 (732)
+..+. ..+...+.+.++. +..+|..|+-.|..++...
T Consensus 241 l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 241 LRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 11111 1222233333332 2334444444443332210
Q ss_pred --h---hH-------HHHHhc-c---hHH----HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh--hchHHHHHH
Q 004761 560 --E---YK-------AKIGRS-G---AVK----ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ--AGAVKHLVD 617 (732)
Q Consensus 560 --~---~k-------~~i~~~-g---~i~----~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~--~G~V~~Ll~ 617 (732)
+ +. +.+.-. | ++| .+-.+|.+.+..-+++|+.||..++.... ..|.. ..+++.++.
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--~~m~~~l~~Il~~Vl~ 396 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS--DVMIGNLPKILPIVLN 396 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHh
Confidence 0 00 011100 1 233 33345667777778888888887765432 12222 346667777
Q ss_pred hc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCH
Q 004761 618 LM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694 (732)
Q Consensus 618 lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i 694 (732)
.| ++++.++..|+.+++.++..= ..-+.-...-.++.|+..+.+ ++++++.+|+.+|.++....+...-.=.=.+++
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm 476 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLM 476 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 77 899999999999999998742 222222233457788888866 688999999999999988654321111113556
Q ss_pred H-HHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 695 P-PLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 695 ~-~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
. .|..+.+++++.+++.|...|.-...
T Consensus 477 ~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 477 EKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 6 77778889999999999888765543
No 81
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00056 Score=76.63 Aligned_cols=276 Identities=15% Similarity=0.069 Sum_probs=180.6
Q ss_pred ccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH--h--cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 442 TTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG--N--CGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~--~--~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
.|...++.|.+.|.+++...+..|..+|..++.++.+.-..-+ + .-.+|.++.+.++++++++..|+..+...-..
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3567789999999999888899999999999977754322211 1 13688899999999999999999988665443
Q ss_pred CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
....-...-..+++.+..+-.+.++++|.+.+.+|..|....-.|-.=--.++++.++..-++.+..+.-.|+.....++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 32222222345677788888888999999999999988764432222222378888888888888888888999999998
Q ss_pred cCchhHHHHHh--hchHHHHHHhc--CC-Ch-------------------------------------------------
Q 004761 598 IFHENKARIIQ--AGAVKHLVDLM--DP-ST------------------------------------------------- 623 (732)
Q Consensus 598 ~~~~n~~~lv~--~G~V~~Ll~lL--~~-~~------------------------------------------------- 623 (732)
..+--+..+.. ...||.|+.-+ ++ +.
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 88744433333 46777777655 11 11
Q ss_pred -----HHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhC--CCHHH
Q 004761 624 -----GMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQE--GAVPP 696 (732)
Q Consensus 624 -----~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~--G~i~~ 696 (732)
+++...+++|..|+.. -+..+.. -.+|.|-+.|.+..=..+|.++-+|.+++.+.-. -++.. -++|.
T Consensus 365 ~~~dWNLRkCSAAaLDVLanv--f~~elL~-~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~ 438 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANV--FGDELLP-ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPF 438 (885)
T ss_pred ccccccHhhccHHHHHHHHHh--hHHHHHH-HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHH
Confidence 0111112222222110 0111111 1234444444455556899999999888774322 12221 25888
Q ss_pred HHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 697 LVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 697 L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
|+.++.+..+-+|....+.|..+..|-
T Consensus 439 l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 439 LLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHhccCccceeeeeeeeHhhhhhhH
Confidence 999998888888888888887776553
No 82
>PTZ00429 beta-adaptin; Provisional
Probab=97.85 E-value=0.0039 Score=73.96 Aligned_cols=256 Identities=14% Similarity=0.080 Sum_probs=168.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
......++.+.+.+.+.++-.--.+.++++..++.-. -++..|.+-+.++|+.++..|+++|.++-. ..+
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i 137 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSV 137 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHH
Confidence 3456778888888888777776677777766554321 235567777888999999999999977643 122
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKA 604 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~ 604 (732)
++ -.+.++.+.|.+.++-+|..|+.++..+-..+. ..+...|.++.|.++|.+.++.++.+|+.+|..+....+...
T Consensus 138 ~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 138 LE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 22 246677788888999999999999999865322 344456888999999999999999999999999986544332
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-Ch
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH-SP 682 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~ 682 (732)
-...+.+..|+..| +.++-.+-..+.+|... .|...... ...+..+...|++.++.+.-.|+.+++++... ++
T Consensus 215 -~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 -ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred -HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 23355666677777 43443344444444332 12211111 23466777778888889999999999888764 23
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+....+.. .+.++|+.|+ ++.+.+|--+...|..+.
T Consensus 290 ~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 290 ELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 32222221 1235556653 455666666655554443
No 83
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.84 E-value=0.0012 Score=70.74 Aligned_cols=230 Identities=19% Similarity=0.167 Sum_probs=164.8
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 449 KLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 449 ~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.|...+.+ .+.+...-|+++|..+.+.. +.|..++.++++..|+..+.+ .+..+|.+.+-+++.|+.++...+.+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~ 238 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLK 238 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHh
Confidence 34444544 56677788999999999775 899999999999999998843 468899999999999999988878777
Q ss_pred HcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCch---hHHHH---HhcchHHHHHHhhcCC---CHHHHHH-------
Q 004761 526 EAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEE---YKAKI---GRSGAVKALVDLLGSG---TLRGRKD------- 588 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~---~k~~i---~~~g~i~~Lv~lL~~~---~~~~~~~------- 588 (732)
.-+.++.|..+++... +.+....++++.|+..... .+..+ +..+-++.-++.|... +++...+
T Consensus 239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~ 318 (442)
T KOG2759|consen 239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEK 318 (442)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999998765 5577788889999977542 22211 1224445556666532 2322211
Q ss_pred HHHHHHHhccCc------------------------hhHHHHHh--hchHHHHHHhc--CCChHHHHHHHHHHHHHhC-C
Q 004761 589 AATALFNLSIFH------------------------ENKARIIQ--AGAVKHLVDLM--DPSTGMVDKAVALLANLST-V 639 (732)
Q Consensus 589 Al~aL~nLs~~~------------------------~n~~~lv~--~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~-~ 639 (732)
--.-...||+.+ +|..++-+ -.++..|+.+| +.++.+.--|+.=+....+ .
T Consensus 319 L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y 398 (442)
T KOG2759|consen 319 LKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY 398 (442)
T ss_pred HHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC
Confidence 111222333331 34455554 35788999999 4455555555555665554 6
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 640 GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 640 ~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
|+|+..+.+.||=..++++|.+.+++++-+|+.++-.|..
T Consensus 399 P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 399 PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999877655
No 84
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=3.2e-06 Score=87.55 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=55.8
Q ss_pred CCCccccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAH-TNLIPNYTVKAMIENW 302 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~ 302 (732)
+--+|.||||++|.+--.+++ |+|.||+.||-+-+..|+..||.|++.+.. ..|.+....-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 345789999999999998875 999999999999999999999999999865 4677666556666543
No 85
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.74 E-value=2.4e-05 Score=57.95 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=35.1
Q ss_pred ccccCcccC---CCceecCCCcccchHHHHHHHhcCCCCCCCCCC
Q 004761 241 RCPLSLELM---IDPVIVASGQTYERVFIQKWLDHGLNICPKTRQ 282 (732)
Q Consensus 241 ~Cpi~~~lm---~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~ 282 (732)
.||||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999999 467889999999999999999 44578999975
No 86
>PTZ00429 beta-adaptin; Provisional
Probab=97.74 E-value=0.007 Score=71.86 Aligned_cols=260 Identities=10% Similarity=0.036 Sum_probs=154.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.+..+.+.|.+.++.++..|+-++..+...+++ .+.+.|+++.|..+|...|+.++.+|+.+|..+.......-. .
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l 216 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-S 216 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-H
Confidence 345667778889999999999999999876653 344568999999999999999999999999988654332221 2
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-hHH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-NKA 604 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n~~ 604 (732)
..+.+..|+..|..-++=.+...+.+|......++ .. ....+..+...|++.++.+.-.|++++.++..+.+ ...
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~-~e---~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK-ES---AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc-HH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence 33456667777766665566666666544321111 11 12467778888888889999999999998876531 111
Q ss_pred HHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChhh-------------------H---H----HHHHcC----cHHH
Q 004761 605 RIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEG-------------------R---L----AIAREG----GIPS 654 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~-------------------r---~----~i~~~~----~I~~ 654 (732)
..+-..+.++|+.+++.+.+++--++..+..++..... + - .+.... .+..
T Consensus 293 ~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~E 372 (746)
T PTZ00429 293 ERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKE 372 (746)
T ss_pred HHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHH
Confidence 11111233445555544445555555444333321100 0 0 000111 1233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 655 LVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 655 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
|.++....+.+.+..++.++..++..-+... ..++..|+.++..+..-.. .+...++.+
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~~~~v~-e~i~vik~I 431 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVDSVA-----PDCANLLLQIVDRRPELLP-QVVTAAKDI 431 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCchhHH-HHHHHHHHH
Confidence 3344444566667777777777665433321 2356778888876544333 344555554
No 87
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.69 E-value=7.1e-05 Score=54.49 Aligned_cols=40 Identities=45% Similarity=0.518 Sum_probs=37.9
Q ss_pred ChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004761 476 NMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 476 ~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs 515 (732)
+++++..+.+.|++|.|+.+|++.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999997
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.65 E-value=0.012 Score=64.40 Aligned_cols=272 Identities=16% Similarity=0.206 Sum_probs=179.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~~~k 521 (732)
....+.+...+-+++.+++-.+.+.+|.+..+. ..-..+.+.+.--.++.-|..+ +..-+++|+..+..+.....+.
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 334455554454555888888889999988654 5556666666555555556533 4455789998887765433222
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
.. ...|.+..++.+..+.+...+..+..+|+.++..+ -..+...|++..|++.+-++........+.++.++...+.
T Consensus 103 ~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 103 KE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 22 24567888999999888899999999999998743 3566778999999999988777788888999999999998
Q ss_pred hHHHHHhhchHHHHHHhc-C-------CCh--HHHHHHHHHHHHHhCChhhHHHHHHc--CcHHHHHHHHhcCCHHHHHH
Q 004761 602 NKARIIQAGAVKHLVDLM-D-------PST--GMVDKAVALLANLSTVGEGRLAIARE--GGIPSLVEVVESGSQRGKEN 669 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~-------~~~--~l~e~al~iL~nLa~~~~~r~~i~~~--~~I~~Lv~lL~~~s~~~~e~ 669 (732)
.|..+...--+..++.-+ + .+. .....+..++..+-++=.|--.+... .++..|+..|..++++.++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 887665533333333333 1 122 22333334444333322233222222 36777777777777777766
Q ss_pred HHHHHHHHhcC-C------------------h-------------------------H--------hHHHHHhCCCHHHH
Q 004761 670 AASILLQLCLH-S------------------P-------------------------K--------FCTLVLQEGAVPPL 697 (732)
Q Consensus 670 A~~~L~~L~~~-~------------------~-------------------------~--------~~~~v~~~G~i~~L 697 (732)
.+.+++.+-.- . . . ....+++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 66666555420 0 0 0 11233578999999
Q ss_pred HHchhcC-ChHHHHHHHHHHHHh
Q 004761 698 VGLSQSG-TPRAKEKAQQLLSHF 719 (732)
Q Consensus 698 ~~Ll~~g-~~~~k~kA~~lL~~l 719 (732)
+.++.+. ++..+.||.-+|..+
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH
Confidence 9999998 688999999988755
No 89
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=3.3e-05 Score=84.21 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=58.2
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCCCCCcccH----HHHHHHHHHHHHcC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH----GLNICPKTRQTLAHTNLIPNY----TVKAMIENWCEENN 307 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~~l~pn~----~l~~~i~~~~~~~~ 307 (732)
.+.+..||||++--.=|+.+.|||.||=.||-.+|.. +...||.|+..+..++|.|-+ .-+..++..+..||
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 3458999999999999999999999999999999874 356799999999887766643 33455666677776
No 90
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.62 E-value=0.0011 Score=71.39 Aligned_cols=178 Identities=16% Similarity=0.197 Sum_probs=138.3
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHH--HHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHHhcc
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGA--KENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFNLSI 598 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~--~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~ 598 (732)
..+...|+++.|+.++..++.++ +..++.+|..+.. .+|++.+...| +..++.+.+. ..++..+..+..|.|+-.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 45666799999999999988654 8899999988754 56888888876 4555555554 357788889999999988
Q ss_pred Cc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC--hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 599 FH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV--GEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 599 ~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~--~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
+. +.+.+++++|++..++-.. ..++.+...|+-+|+|.+-+ .+++..|++..+-.-|.-+-.+.++-.+.+||-+.
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 65 5788999999999998888 66789999999999998754 45778888877777777777777888899999999
Q ss_pred HHHhcCChHhHHHHHhCCC---HHHHHHchh
Q 004761 675 LQLCLHSPKFCTLVLQEGA---VPPLVGLSQ 702 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~---i~~L~~Ll~ 702 (732)
..+.. +.+.-.++.+.|- +++|+..+.
T Consensus 332 ~vlat-~KE~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 332 AVLAT-NKEVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred hhhhh-hhhhhHHHhhccchhhhhhhhhccC
Confidence 88887 5566666666664 445554443
No 91
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.012 Score=63.40 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=172.4
Q ss_pred HHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC------Cch----HHHHHHcCCHHHHH
Q 004761 465 AAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN------DEN----KAMIAEAGAIEPLI 534 (732)
Q Consensus 465 Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~------~~~----k~~i~~~g~l~~Lv 534 (732)
.+..+..+| ..|.---.+++.++++.|+.+|.+.|.++....+..|..|.-. .+. ...+++.+.++.|+
T Consensus 104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 455566666 3455556778899999999999999999999999999988642 122 34556778888888
Q ss_pred HHHcCCC------HHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCC-C-HHHHHHHHHHHHHhccCch-hHH
Q 004761 535 HVLKSGN------GGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSG-T-LRGRKDAATALFNLSIFHE-NKA 604 (732)
Q Consensus 535 ~lL~~~~------~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~-~-~~~~~~Al~aL~nLs~~~~-n~~ 604 (732)
+-+..-+ .....++.+++.|+...+ +....+.+.|.+..|+.-+... . ...+..|.-+|.-+..+.. |+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 8776433 234567788888887654 4556666678888877755432 2 3445667777777766554 888
Q ss_pred HHHhhchHHHHHHhc------CC----ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 605 RIIQAGAVKHLVDLM------DP----STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL------~~----~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
......++..+++-+ ++ ...+.++...+|+.+...+++|..+....|+....-+++. -...+..|+.+|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 888899999998887 21 3467888889999999999999999998888776666654 445677889999
Q ss_pred HHHhcCCh--HhHHHHHhCCCHHHHHHchh
Q 004761 675 LQLCLHSP--KFCTLVLQEGAVPPLVGLSQ 702 (732)
Q Consensus 675 ~~L~~~~~--~~~~~v~~~G~i~~L~~Ll~ 702 (732)
-....+.+ .+|..+++.++...++.+..
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 88888654 68888888777766665554
No 92
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.58 E-value=0.007 Score=67.11 Aligned_cols=209 Identities=16% Similarity=0.026 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+..|++.|.+.++.++..+++.|..+- ..++.+.|+.+|.+.++.++..++.++... .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------R 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------c
Confidence 455555555555555555555554321 123455566666666666665555544431 1
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARI 606 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~l 606 (732)
....+.+..+|++.++.++..|+.+|..+-. ..+++.|...+.+.++.++..|+.++..+-.
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------- 207 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------- 207 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence 2234556666666666666666666655432 2345555556666666666666666643321
Q ss_pred HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhH
Q 004761 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685 (732)
Q Consensus 607 v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~ 685 (732)
.+++..+..+. .........+..++... .. ...++.|..+++.. .++..++.+|..+-.
T Consensus 208 --~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~---------~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~------ 267 (410)
T TIGR02270 208 --RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG---------PDAQAWLRELLQAA--ATRREALRAVGLVGD------ 267 (410)
T ss_pred --HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc---------hhHHHHHHHHhcCh--hhHHHHHHHHHHcCC------
Confidence 12233333322 22222222222222222 10 13456666666542 366666666654333
Q ss_pred HHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 686 TLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 686 ~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..+++.|+..+.. +..++.|.+.++.+...
T Consensus 268 -----p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 268 -----VEAAPWCLEAMRE--PPWARLAGEAFSLITGM 297 (410)
T ss_pred -----cchHHHHHHHhcC--cHHHHHHHHHHHHhhCC
Confidence 3467888887743 34888888888888653
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.56 E-value=0.0062 Score=66.75 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=169.0
Q ss_pred HHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCC--CHHHHHHH
Q 004761 471 LLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSG--NGGAKENS 548 (732)
Q Consensus 471 ~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~--~~e~~~~A 548 (732)
.+-+..+.-+..+.-....+.+..++-+++..++..+.+++..+..+...-..+...+.--.++.-|... +..-|+.|
T Consensus 9 ~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QA 88 (371)
T PF14664_consen 9 DLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQA 88 (371)
T ss_pred HHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHH
Confidence 3334444444444433445555555556669999999999999988888888888877666667777654 35678899
Q ss_pred HHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHH
Q 004761 549 AAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVD 627 (732)
Q Consensus 549 a~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e 627 (732)
...+..+...+..... ...|++..++.+..+.+.+.+..|+.+|..|+..++ ..++.+|++..|++.+ ++...+.+
T Consensus 89 LkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~ 165 (371)
T PF14664_consen 89 LKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISE 165 (371)
T ss_pred HHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHH
Confidence 9998887665432222 244889999999999889999999999999988543 4567899999999999 65556888
Q ss_pred HHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH-hc------CCH--HHHHHHHHHHHHHhcCChHhHHHHHh-CCCHHHH
Q 004761 628 KAVALLANLSTVGEGRLAIAREGGIPSLVEVV-ES------GSQ--RGKENAASILLQLCLHSPKFCTLVLQ-EGAVPPL 697 (732)
Q Consensus 628 ~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL-~~------~s~--~~~e~A~~~L~~L~~~~~~~~~~v~~-~G~i~~L 697 (732)
..+.++-.+..+|..|.-+...--+..++.-+ .. ++. +.-..+..++..+-+..+.....-.. ..++..|
T Consensus 166 ~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL 245 (371)
T PF14664_consen 166 SLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL 245 (371)
T ss_pred HHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence 89999999999999888666533355554433 11 122 23344555555555544332221122 2578889
Q ss_pred HHchhcCChHHHHHHHHHHHHh
Q 004761 698 VGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 698 ~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
+..++..++++++....++--+
T Consensus 246 v~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 246 VDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 9999988888888877765443
No 94
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.6e-05 Score=76.43 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=45.3
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHH-HHhcCCCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQK-WLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~-~~~~~~~~cP~~~~~l~~~~ 288 (732)
.+|.|+||++.|.+|+-++|||.||-.||-- |-.+....||.||+......
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 6999999999999999999999999999999 87776677999998765443
No 95
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=7.6e-05 Score=81.14 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=60.5
Q ss_pred CCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC-----CCcccHHHHHHHHHHHHH
Q 004761 233 GVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT-----NLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 233 ~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-----~l~pn~~l~~~i~~~~~~ 305 (732)
+..++.+|.|-||..++.+||+++|||+||+.||++.++. ...||.|+.++.+. ...+|+.++.+|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457899999999999999999999999999999997774 47799999998752 344678888888888664
No 96
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0014 Score=72.01 Aligned_cols=258 Identities=16% Similarity=0.132 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHcCCC
Q 004761 463 ASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKSGN 541 (732)
Q Consensus 463 ~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~~ 541 (732)
..++-+|..+++.-..-|.-+.++...++|+.+|+.++..+.--+...+.|+... .+-+..+.+.|.+..|+.++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 3455566677766556677777888999999999987777777777788887654 455888889999999999999888
Q ss_pred HHHHHHHHHHHHHhccCchhH--HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-h---hHHHHHhhc----h
Q 004761 542 GGAKENSAAALFSLSVLEEYK--AKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-E---NKARIIQAG----A 611 (732)
Q Consensus 542 ~e~~~~Aa~~L~~Ls~~~~~k--~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~---n~~~lv~~G----~ 611 (732)
...+.+..|+|.++-...++- -...+.-++..++++..+..-.++...+..|.|+..+. . .+..+++.. .
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 899999999999998765443 33344455689999999988999999999999997732 2 233333322 2
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHH-HH-cCcHHHHHHHHh----c-----CC----------------
Q 004761 612 VKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAI-AR-EGGIPSLVEVVE----S-----GS---------------- 663 (732)
Q Consensus 612 V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i-~~-~~~I~~Lv~lL~----~-----~s---------------- 663 (732)
...|++.+ ..++-..+..+.+|.+++.+.+....+ .+ ...+..+.++|. + |+
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 33344444 445555667788888887766544333 22 223333333331 0 10
Q ss_pred ----------------------------HHHHHHHHHHHHHHhcC---------ChHhHHHHHhCCCHHHHHHchhcCCh
Q 004761 664 ----------------------------QRGKENAASILLQLCLH---------SPKFCTLVLQEGAVPPLVGLSQSGTP 706 (732)
Q Consensus 664 ----------------------------~~~~e~A~~~L~~L~~~---------~~~~~~~v~~~G~i~~L~~Ll~~g~~ 706 (732)
.+.-....|+..++... +.+-++.+.+.|.-..|..+....++
T Consensus 647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl 726 (743)
T COG5369 647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL 726 (743)
T ss_pred cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence 11122233333333221 12345556667777777777767778
Q ss_pred HHHHHHHHHHHHhh
Q 004761 707 RAKEKAQQLLSHFR 720 (732)
Q Consensus 707 ~~k~kA~~lL~~l~ 720 (732)
.+++|+..+|.+++
T Consensus 727 ~vrek~~taL~~l~ 740 (743)
T COG5369 727 IVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999876
No 97
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.45 E-value=0.023 Score=64.15 Aligned_cols=242 Identities=18% Similarity=0.180 Sum_probs=157.9
Q ss_pred ccCchHHHHHHHh----------cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC-----CHHHHHH
Q 004761 442 TTTPYVKKLIEDL----------NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE-----AQLTQEH 506 (732)
Q Consensus 442 ~~~~~i~~Lv~~L----------~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~-----~~~v~~~ 506 (732)
..+..+..|++.- ...++++..+|+++|+|+...++..|..+.+.|+.+.++..|+.. +.++.--
T Consensus 19 ~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl 98 (446)
T PF10165_consen 19 FTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFL 98 (446)
T ss_pred ccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHH
Confidence 3344556666554 245678899999999999999999999999999999999999865 6788888
Q ss_pred HHHHHHHhhcC-CchHHHHH-HcCCHHHHHHHHcC-----------------CCHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 507 AVTALLNLSIN-DENKAMIA-EAGAIEPLIHVLKS-----------------GNGGAKENSAAALFSLSVLEEYKAKIGR 567 (732)
Q Consensus 507 A~~~L~nLs~~-~~~k~~i~-~~g~l~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 567 (732)
..++|.-++.. ...+..++ +.+++..|+..|.. .+.+....++.++||+.........-..
T Consensus 99 ~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~ 178 (446)
T PF10165_consen 99 DSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEF 178 (446)
T ss_pred HHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhh
Confidence 88888877654 45566666 45777777776532 0234567888999999764322211011
Q ss_pred cchHHHHHHhhcC---------CCHHHHHHHHHHHHHhccCc-hh-------HH----HHHhhchHHHHHHhc----C--
Q 004761 568 SGAVKALVDLLGS---------GTLRGRKDAATALFNLSIFH-EN-------KA----RIIQAGAVKHLVDLM----D-- 620 (732)
Q Consensus 568 ~g~i~~Lv~lL~~---------~~~~~~~~Al~aL~nLs~~~-~n-------~~----~lv~~G~V~~Ll~lL----~-- 620 (732)
.+.++.++.++.. ........++.+|.|+=... .. .. ......++..|+.+| .
T Consensus 179 ~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~ 258 (446)
T PF10165_consen 179 SPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKY 258 (446)
T ss_pred hHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhc
Confidence 1333444433321 12345667778888772110 00 00 112345777788887 1
Q ss_pred CC---hHHHHHHHHHHHHHhCCh-hhHHHHHH---------------cCc-HHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 621 PS---TGMVDKAVALLANLSTVG-EGRLAIAR---------------EGG-IPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 621 ~~---~~l~e~al~iL~nLa~~~-~~r~~i~~---------------~~~-I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
.. .......+.+|.+++... ..|..+.. .+. -..|++++-+..+..+..+...|+.||..
T Consensus 259 ~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 259 EALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhh
Confidence 11 245666778888888763 34443332 222 57888998887789999999999999986
Q ss_pred ChH
Q 004761 681 SPK 683 (732)
Q Consensus 681 ~~~ 683 (732)
+..
T Consensus 339 d~~ 341 (446)
T PF10165_consen 339 DAS 341 (446)
T ss_pred hHH
Confidence 544
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.45 E-value=5.9e-05 Score=80.17 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=47.2
Q ss_pred cccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 240 FRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
+.|.|++++-++||+-+ +||.|||+-|++++.+. .+||.|+++|+.++|+|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeeec
Confidence 57999999999999975 99999999999999875 689999999999888873
No 99
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.44 E-value=0.00013 Score=60.41 Aligned_cols=44 Identities=32% Similarity=0.604 Sum_probs=34.7
Q ss_pred CCCccccccCcccCCCc-------------eecCCCcccchHHHHHHHhcCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDP-------------VIVASGQTYERVFIQKWLDHGLNICPKTR 281 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dP-------------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~ 281 (732)
++++- |+||++-|.|| +..+|||.|-..||.+|+... .+||.||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 44443 99999999554 334799999999999999876 5999996
No 100
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.017 Score=60.02 Aligned_cols=275 Identities=15% Similarity=0.138 Sum_probs=183.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH----HHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENR----MIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r----~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
....+.|-..|..++..++.-+++.+.-+..+++.|- ..++++|..+.++.++-..|.++...|...|..++..+.
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 3445667777778888888888888777776655332 234577999999999999999999999999999998888
Q ss_pred hHHHHHHcCCHHHHHH--HHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 004761 520 NKAMIAEAGAIEPLIH--VLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFN 595 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~--lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~n 595 (732)
.-..+.+...++++-. +--..+.-+|......+..+.+ .+........+|.+..|..=|+. .+.-+...++...+.
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 8888877666665432 2223344555556666666654 33444455566887777666664 455567778888889
Q ss_pred hccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHH----HHhCChhhHHHHHHc--CcHHHHHHHHhcCCHHH
Q 004761 596 LSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLA----NLSTVGEGRLAIARE--GGIPSLVEVVESGSQRG 666 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~----nLa~~~~~r~~i~~~--~~I~~Lv~lL~~~s~~~ 666 (732)
|...+..++.+.+.|+++.+..++ +.++--.-.++.... +.+-....-+++.+. -+|....+++...++..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 998888999999999999999999 344433444444333 333222222333332 24666677788889999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHhCCC--HHHHHHchhcCChHHH-HHHHHHHHHh
Q 004761 667 KENAASILLQLCLHSPKFCTLVLQEGA--VPPLVGLSQSGTPRAK-EKAQQLLSHF 719 (732)
Q Consensus 667 ~e~A~~~L~~L~~~~~~~~~~v~~~G~--i~~L~~Ll~~g~~~~k-~kA~~lL~~l 719 (732)
.+.|+.+|..|.+ +.+..+.+...|- ...|+.-..+.+..++ +.|..+|..+
T Consensus 321 ieaAiDalGilGS-nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaI 375 (524)
T KOG4413|consen 321 IEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAI 375 (524)
T ss_pred HHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence 9999999999988 4455666666653 4455544444443333 3344455554
No 101
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0043 Score=69.79 Aligned_cols=266 Identities=12% Similarity=0.079 Sum_probs=173.8
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.-.+++++++.+++++.++..|+.++....-... +..+.. ..++..|..+-...+++++.+.+++|.-|-.... .
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--d 248 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP--D 248 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--H
Confidence 5568999999999999999999999988765432 333332 2466667666677899999999999877743211 1
Q ss_pred HHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCC----------------
Q 004761 523 MIA--EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGT---------------- 582 (732)
Q Consensus 523 ~i~--~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~---------------- 582 (732)
.++ -.+.++.++..-++.+.++...|+-....++..+-.+..+... ..+|.|+.=+...+
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 222 2356777777777888889999999999998887777777654 67888875333211
Q ss_pred -------H---------------------------------HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---
Q 004761 583 -------L---------------------------------RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--- 619 (732)
Q Consensus 583 -------~---------------------------------~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--- 619 (732)
| ..++..+.+|--| ..+....+++.++.+|
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPLLKEH 401 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHHHHHH
Confidence 0 1122222222222 1223345566666666
Q ss_pred --CCChHHHHHHHHHHHHHhCChhhHHHHHHc--CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHhHHHHHhCCC
Q 004761 620 --DPSTGMVDKAVALLANLSTVGEGRLAIARE--GGIPSLVEVVESGSQRGKENAASILLQLCLH--SPKFCTLVLQEGA 693 (732)
Q Consensus 620 --~~~~~l~e~al~iL~nLa~~~~~r~~i~~~--~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~--~~~~~~~v~~~G~ 693 (732)
+++-.++|.++-+|+.+|.. +-.-+..+ ..||-++.+|.+..+-+|.-.||+|.+.+.. ... ...... .+
T Consensus 402 L~~~~W~vrEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~-~~~~f~-pv 477 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PV 477 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HH
Confidence 44556677777777777653 22223332 1478888888888899999999999887663 111 111111 23
Q ss_pred HHHHHHchhcCChHHHHHHHHHHHHhhcccc
Q 004761 694 VPPLVGLSQSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 694 i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
+..|...+-.++.++++.|..+...+.+...
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 4445555557889999999999988877643
No 102
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.37 E-value=0.00037 Score=50.66 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=37.6
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 640 GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 640 ~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
++.+..+++.|+++.|+++|.++++.++++|+++|.+||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999999999999984
No 103
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.34 E-value=0.00014 Score=80.19 Aligned_cols=66 Identities=20% Similarity=0.441 Sum_probs=56.6
Q ss_pred CCCccccccCcccCCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP-NYTVKAMIENW 302 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p-n~~l~~~i~~~ 302 (732)
+.+++.||+|..++.||+. +.|||.||+.||..|+.. +..||.|++.+......| -..+++.+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 5678999999999999999 599999999999999988 689999999888776666 34567777766
No 104
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.32 E-value=0.0013 Score=67.22 Aligned_cols=184 Identities=15% Similarity=0.078 Sum_probs=116.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCc---hhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchH
Q 004761 538 KSGNGGAKENSAAALFSLSVLE---EYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAV 612 (732)
Q Consensus 538 ~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V 612 (732)
.+.+.+.+..|+-.|..+.... .....+... ..+..+...+.+....+.+.|+.++..|+..-.....-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567888888888888876533 223333222 45566777777666778899999999998765544433455688
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh---HhHH-H
Q 004761 613 KHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP---KFCT-L 687 (732)
Q Consensus 613 ~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~---~~~~-~ 687 (732)
|.|++.+ +....+.+.|..+|..++..-..-..+ .++.+...+.+.++..+..++..|..+....+ .... .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 9999999 777788899999999988754411111 14555666778899999999999988877544 1111 1
Q ss_pred HHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 688 VLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 688 v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
..-..+++.+...+.++++.+|+.|..++..+....+.
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 11134688899999999999999999999998766544
No 105
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0047 Score=68.34 Aligned_cols=232 Identities=18% Similarity=0.185 Sum_probs=157.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHH----HHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAA----ELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~----~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
...+-|...|...+++++..+=. .|+.+.. ++.. +--...++.++.-+.++++.++..|+..|..+..-...
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s-~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS-SPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-Cccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 34567888888888888753333 3333332 2211 11125788899999999999999999988877654444
Q ss_pred HHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHH---HHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNG-GAKENSAAA---LFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~---L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
.-...-.|.+..++..+.+... .+++.+..+ |..+......+..+--...+..|...+.++....+..++..+..|
T Consensus 284 ~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 284 DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444456777777777765543 344443332 233333333332222224678888889999999999999999999
Q ss_pred ccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
-...+++...-...+.+.|+.-| +.+..++..++.+++++|..+....- -.++..|+++......-....+.-++.
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIR 440 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence 88878877777788999999999 78889999999999999998765411 123455555555555556777888888
Q ss_pred HHhcC-ChH
Q 004761 676 QLCLH-SPK 683 (732)
Q Consensus 676 ~L~~~-~~~ 683 (732)
.||.. +++
T Consensus 441 qlC~lL~aE 449 (675)
T KOG0212|consen 441 QLCLLLNAE 449 (675)
T ss_pred HHHHHhCHH
Confidence 88873 554
No 106
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.29 E-value=0.012 Score=61.03 Aligned_cols=226 Identities=16% Similarity=0.140 Sum_probs=157.5
Q ss_pred HhhccCCHHHHHHHHHHHHHhhcCCchHHHHH-HcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhccCchhHHHHHhc-c
Q 004761 494 SLLYSEAQLTQEHAVTALLNLSINDENKAMIA-EAGAIEPLIHVLKS--GNGGAKENSAAALFSLSVLEEYKAKIGRS-G 569 (732)
Q Consensus 494 ~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~-~~g~l~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g 569 (732)
+++.+=++-++.-|+.+|.++....+.|..+- +...-..+++++++ |..+.+.+++-+++-|+........|-.. .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444456678899999999999887766444 55566778888876 45789999999999999888777666554 6
Q ss_pred hHHHHHHhhcCCC-HHHHHHHHHHHHHhccCc--hhHHHHHhhchHHHHHHhc----CCChHHHHHH-------------
Q 004761 570 AVKALVDLLGSGT-LRGRKDAATALFNLSIFH--ENKARIIQAGAVKHLVDLM----DPSTGMVDKA------------- 629 (732)
Q Consensus 570 ~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~--~n~~~lv~~G~V~~Ll~lL----~~~~~l~e~a------------- 629 (732)
.|.-|+.+.+... ..+.+.++.++.|++... +....+.-.|-+.+-++.| ..+.+++...
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 7888888888653 567788899999998733 3444555566455555555 2333332211
Q ss_pred HHHH----HHH-----hCCh---------hhHHHHHHcC--cHHHHHHHHhcCCHH-HHHHHHHHHHHHhcCChHhHHHH
Q 004761 630 VALL----ANL-----STVG---------EGRLAIAREG--GIPSLVEVVESGSQR-GKENAASILLQLCLHSPKFCTLV 688 (732)
Q Consensus 630 l~iL----~nL-----a~~~---------~~r~~i~~~~--~I~~Lv~lL~~~s~~-~~e~A~~~L~~L~~~~~~~~~~v 688 (732)
+.+. ..| +-.| .+...+.+.+ .+..|.++++...+. --.-|+.-+.++.+..|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 1111 111 1111 1233444433 478888888876554 34457788888888889999999
Q ss_pred HhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 689 LQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 689 ~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
...|+-..++.|+.+.++++|-.|..++..+
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999999998888765
No 107
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.058 Score=58.43 Aligned_cols=237 Identities=16% Similarity=0.146 Sum_probs=165.5
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----hhh----HHHHHhcCCHHHHHHhhccCC------HHHHHHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-----MEN----RMIIGNCGAIPPLLSLLYSEA------QLTQEHAV 508 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-----~~~----r~~i~~~G~I~~Lv~lL~s~~------~~v~~~A~ 508 (732)
-..|+.|+++|.+.|.++....+..|..|+..+ .+. -..+++.+.++.|++-+..=| ..-..+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 456889999999999999999999999998432 222 234555678888888775322 33456777
Q ss_pred HHHHHhhcC-CchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhc----C
Q 004761 509 TALLNLSIN-DENKAMIAEAGAIEPLIHVLKSG--NGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLG----S 580 (732)
Q Consensus 509 ~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~----~ 580 (732)
.++-|+..- +.....+++.|.+.-|+..+... -...+.+|.-+|.-+..+. +++..++...++..++.-+. .
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 888888654 55577777888777777655433 2446677777777666544 58888888877777776543 1
Q ss_pred C-----CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChhhH---HHHHHcCcH
Q 004761 581 G-----TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGR---LAIAREGGI 652 (732)
Q Consensus 581 ~-----~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r---~~i~~~~~I 652 (732)
+ ..+..++-..+|+.+...+.|+.+++...+++...-++....-..-.++.+|-....+++|. ..+++..|+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 1 23556777788888888999999999988887655555323334556888898887777654 566777787
Q ss_pred HHHHHHH-hcC---------CHHHHHHHHHHHHHHhcC
Q 004761 653 PSLVEVV-ESG---------SQRGKENAASILLQLCLH 680 (732)
Q Consensus 653 ~~Lv~lL-~~~---------s~~~~e~A~~~L~~L~~~ 680 (732)
..+..+. +.+ -.+..|+.+.+|+.+-.+
T Consensus 364 rtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 364 RTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 7776643 222 245678889999888774
No 108
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.28 E-value=0.00028 Score=71.34 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=57.4
Q ss_pred cccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHHc
Q 004761 240 FRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQT-LAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~-l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
+.||+|..|.+.|+-+ +|||+||..||+..+...-..||.|... +--+.|+|++..+..|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 8999999999999988 6999999999999887665889999763 23467999999999998887644
No 109
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.036 Score=57.57 Aligned_cols=224 Identities=17% Similarity=0.175 Sum_probs=145.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.+.+++....+ -..|+.+|.+++... .-|..+... ++..++..+..+....-...+.+|.||+.++.....+
T Consensus 44 ~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 44 ALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred hhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 346777777766554 567889999999654 566666665 8888888888776777888899999999987653333
Q ss_pred HH--c----CCHHHHH-HHHcCC-CH-HHHHHHHHHHHHhccCchhHHHHHhcch--HHHHHHhhcCCCHHH-HHHHHHH
Q 004761 525 AE--A----GAIEPLI-HVLKSG-NG-GAKENSAAALFSLSVLEEYKAKIGRSGA--VKALVDLLGSGTLRG-RKDAATA 592 (732)
Q Consensus 525 ~~--~----g~l~~Lv-~lL~~~-~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~--i~~Lv~lL~~~~~~~-~~~Al~a 592 (732)
.. . .++..++ .....+ +. .--.+.|.++.+|+.....|..+..... +..++.+-. .+..+ +...+.+
T Consensus 120 l~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~Gvagt 198 (353)
T KOG2973|consen 120 LTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGT 198 (353)
T ss_pred HHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHH
Confidence 21 1 3344444 444433 21 2334677888899998888888776542 233333333 33333 4457789
Q ss_pred HHHhccCchhHHHHHhh--chHHHHH---------------------Hhc------CCChHHHHHHHHHHHHHhCChhhH
Q 004761 593 LFNLSIFHENKARIIQA--GAVKHLV---------------------DLM------DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 593 L~nLs~~~~n~~~lv~~--G~V~~Ll---------------------~lL------~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
|.|.|....+...++.. .+.|.++ ++| ++++.+...-+.+|..||.+..||
T Consensus 199 lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR 278 (353)
T KOG2973|consen 199 LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR 278 (353)
T ss_pred HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH
Confidence 99999998888877763 3334332 222 124567778889999999999999
Q ss_pred HHHHHcCcHHHHHHHHhc-CCHHHHHHHHHH
Q 004761 644 LAIAREGGIPSLVEVVES-GSQRGKENAASI 673 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~ 673 (732)
+.+..-|+-+.+-++=.. .+++..+.+-.+
T Consensus 279 e~lR~kgvYpilRElhk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 279 EVLRSKGVYPILRELHKWEEDEDIREACEQV 309 (353)
T ss_pred HHHHhcCchHHHHHHhcCCCcHHHHHHHHHH
Confidence 998876655544443333 345554433333
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.16 E-value=0.037 Score=62.44 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=161.1
Q ss_pred HHHHHHHhccChhhHHHHHhcCCHHHHHHhh----------ccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHH
Q 004761 466 AAELRLLAKHNMENRMIIGNCGAIPPLLSLL----------YSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLI 534 (732)
Q Consensus 466 l~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL----------~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv 534 (732)
+..|+.++++. .+-.-+....++..|+.+- ...+..+...|+.+|.|+-.. +..|..+.+.|+.+.++
T Consensus 2 L~~LRiLsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 45566666442 3444444444555555544 345789999999999999776 55688888999999999
Q ss_pred HHHcCC-----CHHHHHHHHHHHHHhcc-CchhHHHHHhc-chHHHHHHhhcC-----------------CCHHHHHHHH
Q 004761 535 HVLKSG-----NGGAKENSAAALFSLSV-LEEYKAKIGRS-GAVKALVDLLGS-----------------GTLRGRKDAA 590 (732)
Q Consensus 535 ~lL~~~-----~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~-g~i~~Lv~lL~~-----------------~~~~~~~~Al 590 (732)
..|+.. +.+.......+||-++. ..+.+..+... +++..++..|.. ........++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999987 68888899999988875 44555555544 777777765531 1234567899
Q ss_pred HHHHHhccCchhHHHHHhhc----hHHHHHHhc------CCChHHHHHHHHHHHHHhC-Chhh-------HHHH----HH
Q 004761 591 TALFNLSIFHENKARIIQAG----AVKHLVDLM------DPSTGMVDKAVALLANLST-VGEG-------RLAI----AR 648 (732)
Q Consensus 591 ~aL~nLs~~~~n~~~lv~~G----~V~~Ll~lL------~~~~~l~e~al~iL~nLa~-~~~~-------r~~i----~~ 648 (732)
+.++|+..+......--..+ ++..|..++ .+.......++.+|.|+-- +... ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999987544322211223 334444441 1223455667777777621 1111 0011 11
Q ss_pred cCcHHHHHHHHhc----CC----HHHHHHHHHHHHHHhcCChHhHHHHHh----------------CCCHHHHHHchhcC
Q 004761 649 EGGIPSLVEVVES----GS----QRGKENAASILLQLCLHSPKFCTLVLQ----------------EGAVPPLVGLSQSG 704 (732)
Q Consensus 649 ~~~I~~Lv~lL~~----~s----~~~~e~A~~~L~~L~~~~~~~~~~v~~----------------~G~i~~L~~Ll~~g 704 (732)
...+..|+.+|+. .. .+.-.-.+.+|..++..+...++.+.. .++-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2246777777643 11 133444566777777765554444432 24567899999998
Q ss_pred ChHHHHHHHHHHHHhhccc
Q 004761 705 TPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 705 ~~~~k~kA~~lL~~l~~~~ 723 (732)
.+.+|..++++|=.+.+..
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999997776543
No 111
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.046 Score=64.41 Aligned_cols=253 Identities=21% Similarity=0.197 Sum_probs=156.7
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 448 KKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 448 ~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+-++..|. ...+.++.-|+..+..++... ++-.-+++.|.+..|+.+|.+ -+..++.++.+|..|+.+.+-...-++
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 33444444 345677888888887776443 556667788888888888865 577889999999999988877677778
Q ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCch--hHHHHH-------------hcchHHHHHHhhcCC--CHHH---
Q 004761 527 AGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEE--YKAKIG-------------RSGAVKALVDLLGSG--TLRG--- 585 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~--~k~~i~-------------~~g~i~~Lv~lL~~~--~~~~--- 585 (732)
.|++..+..++... ++..|..||..+..|....- -|..|. +.|- +..|+++... +|+.
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn 1930 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWN 1930 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccC
Confidence 89999988877655 47788888888877643221 111111 1111 2333333311 1110
Q ss_pred ---H----------------------------------------------------------------------------
Q 004761 586 ---R---------------------------------------------------------------------------- 586 (732)
Q Consensus 586 ---~---------------------------------------------------------------------------- 586 (732)
+
T Consensus 1931 ~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~le 2010 (2235)
T KOG1789|consen 1931 EVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLE 2010 (2235)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------HHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcH
Q 004761 587 ------------KDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGI 652 (732)
Q Consensus 587 ------------~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I 652 (732)
..--.|+..|...+ .-..++-..|-+|.++..+ ..+..+-..|+.+|..|+.+.-+..+|....++
T Consensus 2011 lm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i 2090 (2235)
T KOG1789|consen 2011 LMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCI 2090 (2235)
T ss_pred HhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccc
Confidence 00001111111111 1122333345555555554 223333356888999999988888999888777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcC
Q 004761 653 PSLVEVVESGSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSG 704 (732)
Q Consensus 653 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g 704 (732)
..++..+... +.....|+.+|-.+... ..+.+...+..|.+|.|+.|+..-
T Consensus 2091 ~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2091 DGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 7788877542 23344788888888764 345666677899999999999753
No 112
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.12 E-value=0.00024 Score=73.60 Aligned_cols=65 Identities=22% Similarity=0.437 Sum_probs=54.2
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHT----NLIPNYTVKAMIEN 301 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~pn~~l~~~i~~ 301 (732)
+=+...|++|..+|-|+=++ -|=|||||+||-++|.. ..+||.|+..+..+ .+.+..+|+.++.+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 34577899999999999886 59999999999999998 58999999877654 46777788777754
No 113
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.11 E-value=0.0028 Score=59.90 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHhhcccccccchHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhcch
Q 004761 18 HLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSE 97 (732)
Q Consensus 18 ~~i~~~~~~~~~~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~~Sklyll~~~~ 97 (732)
..+.....+...+|..+.++...++.|.|+++||...+..++..-..-++.|...|++++.|++.|+.. +-|=++.-.
T Consensus 20 k~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~--~r~n~~kk~ 97 (147)
T PF05659_consen 20 KAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKV--RRWNLYKKP 97 (147)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHhhH
Confidence 444455566667788999999999999999999988776666666888999999999999999999984 677788889
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004761 98 PLMMKIQSSSLEICHILY 115 (732)
Q Consensus 98 ~i~~~f~~~~~~i~~~L~ 115 (732)
.+..+++++-.+|.+.++
T Consensus 98 ~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 98 RYARKIEELEESLRRFIQ 115 (147)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 999999999998888875
No 114
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.013 Score=65.05 Aligned_cols=270 Identities=16% Similarity=0.131 Sum_probs=173.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH-HcC
Q 004761 451 IEDLNSTSNEIQASAAAELRLLAKHNMENRM-IIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA-EAG 528 (732)
Q Consensus 451 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~-~~g 528 (732)
+..+..+++...+.++..+-.+.++-..-+. .+.-.++||.|-.-++..++.++...+..|.-|-..+.- ..+- -..
T Consensus 130 L~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~-~m~~yl~~ 208 (675)
T KOG0212|consen 130 LCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL-EMISYLPS 208 (675)
T ss_pred HHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH-HHHhcchH
Confidence 3344444444455555555555443221111 222235666666666677888888888877766443322 2121 245
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh-cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR-SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARII 607 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv 607 (732)
.++.|..+|.+.+.+++..+-.+|.++...-.++..... ...++.++.-+.+.++..+..|+..|.....-.++..-..
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 788889999999999997777766665321112222212 2578888888899999999999999999888777766667
Q ss_pred hhchHHHHHHhc-CCCh-HHHHHHH---HHHHHHhCChhhHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 608 QAGAVKHLVDLM-DPST-GMVDKAV---ALLANLSTVGEGRLAIAREG-GIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 608 ~~G~V~~Ll~lL-~~~~-~l~e~al---~iL~nLa~~~~~r~~i~~~~-~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
-.|++..++..+ +... .+.+.+. ..|..++..+...+. ++.| .+..+.+.+.+...+++-.|..-+..|-++.
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC
Confidence 788989999988 3322 3333332 345556666655544 4444 4788888898888888988887777777654
Q ss_pred hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
|. .-.+....+.+.|+.-+.+.++.+-..+..+|..+....
T Consensus 368 p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 368 PG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred cc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 43 223334567788888777777777777777777765543
No 115
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.09 E-value=0.0045 Score=63.20 Aligned_cols=181 Identities=20% Similarity=0.139 Sum_probs=112.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhccC--hhhHHHHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-HHHHHHcC
Q 004761 454 LNSTSNEIQASAAAELRLLAKHN--MENRMIIGNC--GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KAMIAEAG 528 (732)
Q Consensus 454 L~s~~~~~~~~Al~~L~~La~~~--~~~r~~i~~~--G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~-k~~i~~~g 528 (732)
-.+.+++.+..|+..|+.+...+ ......+.+. ..+..+...+.+....+...|+.++..++..-.. -... -..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 35678999999999999999876 2333333321 4556777777777788999999999988764222 2222 234
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-hHHHHH
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-NKARII 607 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n~~~lv 607 (732)
.++.|+..+.++...++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... +...+-
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 6888999999888889999999998887643311111 14666677788899999999999988866443 111111
Q ss_pred h----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 004761 608 Q----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 608 ~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~ 639 (732)
. ..+++.+...+ +.++.+++.|-.++..+..+
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 34677777777 88999999998888888543
No 116
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.13 Score=60.96 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=98.6
Q ss_pred HHHHHHHHHhccCch-hHH----HHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH
Q 004761 587 KDAATALFNLSIFHE-NKA----RIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVV 659 (732)
Q Consensus 587 ~~Al~aL~nLs~~~~-n~~----~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL 659 (732)
..++.||.|+....+ -.. ...--|..+.+..+| ..++.+...|+.++..+....++...+...+.+..|+.+|
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 456667777655332 111 111235556666666 4566678888888888888888888898888888999998
Q ss_pred hcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc-CChHHHHHHHHHHHHhhccc
Q 004761 660 ESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS-GTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 660 ~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~~ 723 (732)
++ -|..++.++.+|+.|++ +++...++.+.|++.-+..++-. .++..+..|+++|.-|....
T Consensus 1823 HS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1823 HS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred hc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 75 57789999999999999 67888888888887776665554 45788888899988776543
No 117
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.93 E-value=0.0031 Score=53.80 Aligned_cols=86 Identities=35% Similarity=0.389 Sum_probs=69.1
Q ss_pred HHHHHHhh-ccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 489 IPPLLSLL-YSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR 567 (732)
Q Consensus 489 I~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 567 (732)
|+.|+..| +++++.++..|+.+|.++. ....++.|+.+++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 7889999999999998442 224589999999999999999999999876 33
Q ss_pred cchHHHHHHhhcCCC-HHHHHHHHHHHH
Q 004761 568 SGAVKALVDLLGSGT-LRGRKDAATALF 594 (732)
Q Consensus 568 ~g~i~~Lv~lL~~~~-~~~~~~Al~aL~ 594 (732)
..+++.|.+++.+++ ..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 458899999998754 556788887763
No 118
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.059 Score=60.91 Aligned_cols=262 Identities=17% Similarity=0.140 Sum_probs=162.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHH-HHHHHHHhhcCCchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH-AVTALLNLSINDENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~-A~~~L~nLs~~~~~k~~i 524 (732)
..+.+.+.+.......+..|.+.+..+.+... -..+.+.+++..|-............. +.-+....+..-. ..
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~ 209 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PP 209 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CC
Confidence 45677788888888889999999999987643 445566788888888887654333222 2222211111100 11
Q ss_pred HHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 525 AEAGAIEPLIHVL---KSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 525 ~~~g~l~~Lv~lL---~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
.+...++.+-.+| .+...++|..|..+...+-. ...+.. .-.+|.++.-+.....+.+..++..|..++...
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 1233333333333 34445666655555443321 111111 123455554444446788999999999998888
Q ss_pred hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh-----------------------------HHHHH---
Q 004761 601 ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG-----------------------------RLAIA--- 647 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~-----------------------------r~~i~--- 647 (732)
+-.-...-..+||.+.+.| +..+.+++.+-.+|..+++.-++ +..++
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEV 365 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeee
Confidence 7777788889999999999 88888888888887777653211 11111
Q ss_pred HcCcHHHHHHHHhc----CCHHHHHHHHHHHHHHhcC--ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHH
Q 004761 648 REGGIPSLVEVVES----GSQRGKENAASILLQLCLH--SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717 (732)
Q Consensus 648 ~~~~I~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~--~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~ 717 (732)
++..+..++.++++ .+...+..++.+..|+|.- ++......+.. ++|.|-..+..-.|.+|.-|..+|.
T Consensus 366 ~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 366 DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHH
Confidence 22345556666644 3556678899999999994 44444433332 5777777777767899988888883
No 119
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.065 Score=63.51 Aligned_cols=242 Identities=17% Similarity=0.108 Sum_probs=166.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHH-hhcCCchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLN-LSINDENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~n-Ls~~~~~k~~i 524 (732)
+++..++-|-+. --+..|+..|..+..-.+=.-..-..-|..|..+++|.++..+++..-+-+=.. |+.|+..+..+
T Consensus 473 QLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL 550 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL 550 (1387)
T ss_pred hcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH
Confidence 344445544331 224556666655543332222222345999999999999888776655544444 57787788888
Q ss_pred HHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhcc-
Q 004761 525 AEAGAIEPLIHVLKSG---NGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLSI- 598 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~- 598 (732)
+..++-..++.+|..+ ++|-|..||-+|..+..+ .-.+......+.|...+..|.++ .+-.+.-.+-+|..|-.
T Consensus 551 vKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 551 VKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred HhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 8888888888888773 358888899888888763 33455555668888888888875 46667778888888865
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-----hhhHHHH---H--------HcCcH----HHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-----GEGRLAI---A--------REGGI----PSLVE 657 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-----~~~r~~i---~--------~~~~I----~~Lv~ 657 (732)
+..+|..-++.++...|+.+| ++-++++-.|+.+|..+.+. ++....+ + -.+.+ ..++.
T Consensus 631 ~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~ 710 (1387)
T KOG1517|consen 631 YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA 710 (1387)
T ss_pred cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH
Confidence 567888888899999999999 78888999999999988763 2222111 1 11222 36677
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 004761 658 VVESGSQRGKENAASILLQLCLHSPKFCTLVL 689 (732)
Q Consensus 658 lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~ 689 (732)
++..+++-++...+.+|..+..+...+...+.
T Consensus 711 ~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 711 LVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 77889999888888888888876555444433
No 120
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.81 E-value=0.033 Score=52.96 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=98.3
Q ss_pred HHHhcchHHHHHHhhcCCC------HHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHH
Q 004761 564 KIGRSGAVKALVDLLGSGT------LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLA 634 (732)
Q Consensus 564 ~i~~~g~i~~Lv~lL~~~~------~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~ 634 (732)
.+...+++..|++++.++. ......++.|+..|-.++-.-...+....|..++.++ ..+..+...|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 3455688999999999876 3667778999999888766566788888899999998 236889999999999
Q ss_pred HHhCChhhHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 635 NLSTVGEGRLAIAREG-GIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 635 nLa~~~~~r~~i~~~~-~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
+++..+......+... .++.|+.+|+..++..+.+|++.+-+|..+.++
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 9998877755555444 599999999999999999999999999886544
No 121
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.80 E-value=0.14 Score=55.41 Aligned_cols=183 Identities=26% Similarity=0.288 Sum_probs=125.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..+..+++.+.+.+..++..|...+..+.. .-+++.|..++.+.++.++..|+.+|.++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 457889999999888888888877555432 247889999999999999999999886653
Q ss_pred HHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHH------------HHHHHH
Q 004761 525 AEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRG------------RKDAAT 591 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~------------~~~Al~ 591 (732)
....+++|+..|. +++..+|..++.+|..+-. ..++.+++..+.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2346888999998 5888999999999987643 234788888888765322 222222
Q ss_pred HHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Q 004761 592 ALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENA 670 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A 670 (732)
+|.. +.....++.+.+++ +....+...+...|..+.... ......+...+...+...+..+
T Consensus 172 ~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 2222 12234667777777 666677888888888776654 1234555555666666665555
Q ss_pred HHHHHH
Q 004761 671 ASILLQ 676 (732)
Q Consensus 671 ~~~L~~ 676 (732)
+..|..
T Consensus 234 ~~~l~~ 239 (335)
T COG1413 234 LLALGE 239 (335)
T ss_pred HHHhcc
Confidence 554443
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.77 E-value=0.0072 Score=51.45 Aligned_cols=85 Identities=27% Similarity=0.351 Sum_probs=67.4
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 530 IEPLIHVL-KSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ 608 (732)
Q Consensus 530 l~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~ 608 (732)
++.|++.| +++++.+|..++.+|..+- ...+++.|+.++++.++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889988 7788999999999998442 2256899999999999999999999998772 3
Q ss_pred hchHHHHHHhc-C-CChHHHHHHHHHHH
Q 004761 609 AGAVKHLVDLM-D-PSTGMVDKAVALLA 634 (732)
Q Consensus 609 ~G~V~~Ll~lL-~-~~~~l~e~al~iL~ 634 (732)
..+++.|.+++ + .+..+...|+..|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45888999988 4 34555777777664
No 123
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.15 Score=53.22 Aligned_cols=244 Identities=12% Similarity=0.135 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHH
Q 004761 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI 534 (732)
Q Consensus 456 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv 534 (732)
..+.-.+...+..|..+.+.+++.-......|.+..|..-|+. .|.-+..+++.....|+.....++.+.+.|.++.+.
T Consensus 182 kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlic 261 (524)
T KOG4413|consen 182 KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLIC 261 (524)
T ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHH
Confidence 3445567778888888888888877777788999988887775 677788888999999998888999999999999999
Q ss_pred HHHcCCC--HHHHHHHHHH----HHHhccCchhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 535 HVLKSGN--GGAKENSAAA----LFSLSVLEEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARI 606 (732)
Q Consensus 535 ~lL~~~~--~e~~~~Aa~~----L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~l 606 (732)
.++...+ +-.+..++.. +.+.+..+-.-..+.+. -+|...++++...++.....|+-++..|-++.+.+..+
T Consensus 262 nIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadll 341 (524)
T KOG4413|consen 262 NIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLL 341 (524)
T ss_pred HHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHH
Confidence 9886432 2222223322 22333322222333322 46677788888889999999999999999998888877
Q ss_pred Hhhch--HHH-HHHhcC-CChHHHHHHHHHHHHHhCC--------hhhHH------HHHH-------cCcHHHHHHHHhc
Q 004761 607 IQAGA--VKH-LVDLMD-PSTGMVDKAVALLANLSTV--------GEGRL------AIAR-------EGGIPSLVEVVES 661 (732)
Q Consensus 607 v~~G~--V~~-Ll~lL~-~~~~l~e~al~iL~nLa~~--------~~~r~------~i~~-------~~~I~~Lv~lL~~ 661 (732)
.+.|- ... +....+ ....-++.++.+|.++++. .+|+. .+.+ -.-...+..+++-
T Consensus 342 lkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQ 421 (524)
T KOG4413|consen 342 LKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQ 421 (524)
T ss_pred hccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcC
Confidence 77663 333 333332 2333467778888888752 12221 1111 1224556667777
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHH-HhCCCHHHHHHc
Q 004761 662 GSQRGKENAASILLQLCLHSPKFCTLV-LQEGAVPPLVGL 700 (732)
Q Consensus 662 ~s~~~~e~A~~~L~~L~~~~~~~~~~v-~~~G~i~~L~~L 700 (732)
+.++.+-.+..++..+... |=....+ ..+|.+.....-
T Consensus 422 pfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 422 PFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred CChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeeccc
Confidence 7888888888888887773 3223333 346666554443
No 124
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.75 E-value=0.0035 Score=45.06 Aligned_cols=38 Identities=37% Similarity=0.485 Sum_probs=35.6
Q ss_pred hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004761 478 ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 478 ~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs 515 (732)
+++..+.+.|+++.|+.+|.+++..++..|+++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999987
No 125
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.02 Score=63.14 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=142.7
Q ss_pred HHHHHHHHhhcCC-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCH
Q 004761 506 HAVTALLNLSIND-ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTL 583 (732)
Q Consensus 506 ~A~~~L~nLs~~~-~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~ 583 (732)
.++..|..++... --|..+.+....++|+++|.++..-+.--+...++|+-. ...-+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3444555555543 347788889999999999998665566667778888765 44557778888999999999998888
Q ss_pred HHHHHHHHHHHHhccCchh--HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-h---hHHHHHHcC----cH
Q 004761 584 RGRKDAATALFNLSIFHEN--KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-E---GRLAIAREG----GI 652 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~~n--~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~---~r~~i~~~~----~I 652 (732)
..+....+.+.++-.+.++ +-+++..-++..++++. ++.-.++..++.+|.|+.... . .+.-..... ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 8899999999999886543 45778888889999999 888899999999999985422 1 222222221 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh-CCCHHHHHHch
Q 004761 653 PSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ-EGAVPPLVGLS 701 (732)
Q Consensus 653 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~-~G~i~~L~~Ll 701 (732)
..|++.++..+|-..+..+.+|.+++.-++.....+.+ ...+..+..++
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 55666777778888888899999998866665555554 34444444444
No 126
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.66 E-value=0.0019 Score=54.24 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=37.6
Q ss_pred CCccccccCcccCCC-ceec-CCCcccchHHHHHHHhc--CCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMID-PVIV-ASGQTYERVFIQKWLDH--GLNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm~d-PV~~-~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~ 285 (732)
|-+-.||.|...=.| |++. .|||.|-..||.+|++. +..+||.||++..
T Consensus 30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 334456666666555 7665 69999999999999985 4578999999864
No 127
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.001 Score=67.88 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=48.7
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
.|-|-||.+-+.+||++.|||+||..|-.+.++.+ ..|++|++.. +-.+-+...|.....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t-~g~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQT-HGSFNVAKELLVSLK 300 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccc-ccccchHHHHHHHHH
Confidence 48899999999999999999999999999999887 7899999875 344555555544443
No 128
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0011 Score=67.73 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=43.2
Q ss_pred ccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
.||||+.-|--||.++|+|.||--||+--...+..+||+|+++++++
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 59999999999999999999999999987777777999999999875
No 129
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.18 Score=57.84 Aligned_cols=251 Identities=18% Similarity=0.212 Sum_probs=152.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCC-chH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSIND-ENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~-~~k 521 (732)
...++.|++.|..+++.++-.|+..|+.||+.+|.|-- ..-|.+..+|. ++|--+....+....+|+--+ ...
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg 254 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG 254 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh
Confidence 44578999999999999999999999999999886632 34567777774 445556667777777776543 222
Q ss_pred HHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHH--hccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 522 AMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFS--LSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~--Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
. ..+++|..++++.. +.....+..++.. ++.- .++-..+. -++..|-.++.+.++..+..++.|+..+.
T Consensus 255 K-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 255 K-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred h-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 2 35888999887654 3333344433322 2221 11111111 24566777788889999999999999988
Q ss_pred cCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHHHHH
Q 004761 598 IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGS-QRGKENAASILL 675 (732)
Q Consensus 598 ~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s-~~~~e~A~~~L~ 675 (732)
..+.-. |.+ --..++..| +.+..++-.|+.+|.-++.... -.+| +..|+..+...+ ..-+..-+..+.
T Consensus 328 ktHp~~---Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN-l~eI-----Vk~LM~~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 328 KTHPKA---VQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKN-LMEI-----VKTLMKHVEKAEGTNYRDELLTRII 397 (877)
T ss_pred hhCHHH---HHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhh-HHHH-----HHHHHHHHHhccchhHHHHHHHHHH
Confidence 765421 211 113456667 7889999999999998876432 2222 344444443322 245556666667
Q ss_pred HHhcCChHhHHHHHhC-CCHHHHHHchhc-CChHHHHHHHHHHHH
Q 004761 676 QLCLHSPKFCTLVLQE-GAVPPLVGLSQS-GTPRAKEKAQQLLSH 718 (732)
Q Consensus 676 ~L~~~~~~~~~~v~~~-G~i~~L~~Ll~~-g~~~~k~kA~~lL~~ 718 (732)
.+|+.+.. ..+.+. =.+..|+.|.+- |+..+..-|..++-.
T Consensus 398 ~iCS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 398 SICSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred HHhhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 77774322 233332 234555555543 344444444444433
No 130
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.19 Score=58.03 Aligned_cols=273 Identities=11% Similarity=0.077 Sum_probs=170.9
Q ss_pred cccCchHHHHHHHhcCCCHH-HHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcc--CCHHHHHHHHHHHHHhh-
Q 004761 441 VTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYS--EAQLTQEHAVTALLNLS- 515 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~-~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs- 515 (732)
..|.+.+..|+.......+. .+..++..|..++.+-. -....... ..+..++.-.+. ++..++-.|+.+|.|--
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 35677888888888766554 77888999999986532 22333332 455556655543 46788999999998742
Q ss_pred cC------CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHH
Q 004761 516 IN------DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKD 588 (732)
Q Consensus 516 ~~------~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~ 588 (732)
.. +.+|..| +...++.-..++.+++..|..+|..+.. +-+.-...+....+..-+.-+++.++++...
T Consensus 204 f~~~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 204 FTKANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred HHHHhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 21 1223322 2333344456678888888888887754 2233333333345555666778888888888
Q ss_pred HHHHHHHhccCc-h----------------hHHHHH--hhchHHHHHHhc-C--C-----ChHHHHHHHHHHHHHhCChh
Q 004761 589 AATALFNLSIFH-E----------------NKARII--QAGAVKHLVDLM-D--P-----STGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 589 Al~aL~nLs~~~-~----------------n~~~lv--~~G~V~~Ll~lL-~--~-----~~~l~e~al~iL~nLa~~~~ 641 (732)
|+....++|... + +..... -.+++|.|+++| . + +-+....|-.+|..++.+-
T Consensus 279 aiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~- 357 (859)
T KOG1241|consen 279 AIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV- 357 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-
Confidence 887777776521 0 111111 137889999999 2 1 1223444444454444321
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 642 ~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+..|+. ..++.+-+-+++++-+.++.|+.++..+-.+....+..-+..+++|.++.++...+--+|+-+++.|.-+.+
T Consensus 358 -~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 358 -GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred -cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 222333 344555556778888899999999988888644555555667889999999997677788888888776654
Q ss_pred c
Q 004761 722 Q 722 (732)
Q Consensus 722 ~ 722 (732)
.
T Consensus 436 ~ 436 (859)
T KOG1241|consen 436 F 436 (859)
T ss_pred h
Confidence 3
No 131
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.40 E-value=0.0027 Score=63.79 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=46.9
Q ss_pred CccccccCcccCCCceec-CCCcccchHHHHHHHhcC-CCCCCCCCCC----CCCCCCcccHHHHHHHHH
Q 004761 238 PYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHG-LNICPKTRQT----LAHTNLIPNYTVKAMIEN 301 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~-~~~cP~~~~~----l~~~~l~pn~~l~~~i~~ 301 (732)
-+++|||+......||+- .|||.|||..|+..+... ...||+-|.. +....+.+...++.-|++
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 368999999999999984 799999999999999752 3569987765 122344554455555543
No 132
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.39 E-value=0.0025 Score=66.52 Aligned_cols=54 Identities=15% Similarity=0.349 Sum_probs=43.7
Q ss_pred CCCccccccCcccCCC--cee--cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 236 IPPYFRCPLSLELMID--PVI--VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d--PV~--~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
-...|.||||+..|.. +.+ .+|||+|...+|++-- ....||+|++++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3578999999999954 332 4899999999999883 2357999999999887664
No 133
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.39 E-value=0.31 Score=54.28 Aligned_cols=150 Identities=21% Similarity=0.049 Sum_probs=93.7
Q ss_pred chHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 445 PYVKKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
..++.++..|. ..+.++...++..+ .....+ .++..|+..|.+.++.++..+..+|..+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al--~~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALAL--LAQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHH--hccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 34566777774 34444444333322 111111 13677888888777778888877775432
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
..+..+.|+.+|++.++.++..++.++... .....+.+..+|++.++.++..|+.+|..|-.
T Consensus 115 --~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 115 --GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR----- 176 (410)
T ss_pred --chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence 234567777788777777777666555431 11345677778888888888888888876532
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL 636 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL 636 (732)
...++.|...+ +.+..+...|+..|..+
T Consensus 177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred -----ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 24555566666 67777777777777555
No 134
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.35 E-value=0.0016 Score=70.88 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=45.6
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCCCCCcc
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH----GLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~~l~p 291 (732)
.+..|-+|.+.-+||+..+|.|+|||-||.+|... .+-+||.|..+|+.+.-.|
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 46789999999999999999999999999998752 3478999999887654333
No 135
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.34 E-value=0.48 Score=47.93 Aligned_cols=178 Identities=14% Similarity=0.091 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhccCchh--HHHHHhcchHHH
Q 004761 501 QLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSG-----NGGAKENSAAALFSLSVLEEY--KAKIGRSGAVKA 573 (732)
Q Consensus 501 ~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~ 573 (732)
..-..+|+..|.-++.+++.|..+..+..--.|-.+|..+ .+-.|..++++|..|..+++. ...+...+++|.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 4456888889988999999999999887655666777654 356899999999999876643 334556799999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCchhHH-------HHHh-hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 574 LVDLLGSGTLRGRKDAATALFNLSIFHENKA-------RIIQ-AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 574 Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~-------~lv~-~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
.+..+..|+...+..|..++..+-.++.+-. ++.. .-++..++.-+ .++..+...++.+.-+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999998877664332 2222 12333333333 567888999999999999999888
Q ss_pred HHHHHc--CcH--HHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 644 LAIARE--GGI--PSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 644 ~~i~~~--~~I--~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
.++... +.+ .....+++ .++..+..-...+.++|.
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 877642 222 22333343 345556555555666654
No 136
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.29 E-value=0.01 Score=42.60 Aligned_cols=40 Identities=43% Similarity=0.403 Sum_probs=35.9
Q ss_pred chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 559 EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 559 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
++++..+.+.|+++.|+++|.++++.+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888889999999999999899999999999999973
No 137
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0018 Score=74.80 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=41.7
Q ss_pred CCccccccCcccCCC-----ceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMID-----PVIVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 237 p~~f~Cpi~~~lm~d-----PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
..+-.|+||.+.|.. |=.++|||.|...|+.+|++.. .+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhh
Confidence 346789999999999 7789999999999999999984 7999999844
No 138
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.21 E-value=0.42 Score=49.15 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhc-------cCC-----HHHHHHHHHHHHHhhcCCchHHHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLY-------SEA-----QLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~-------s~~-----~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
+++.+..|+.+|..--...++---.+-. .|.+..|+.=.- .+. ..-..+|+..|.-++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677888887776554433333333333 476666654321 221 234578888888889999999999
Q ss_pred HHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCch--hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 525 AEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEE--YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
..+...-.|..+|+..+ +..|..+++++..|...++ .-..+...+.+|..+..+..|+.-.+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887766777776543 5588899999999987543 3445567799999999999999999999999999887
Q ss_pred cCchhHH-------HHHh-hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHH
Q 004761 598 IFHENKA-------RIIQ-AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAR 648 (732)
Q Consensus 598 ~~~~n~~-------~lv~-~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~ 648 (732)
.++.+-. ++.. ..++..++.-+ .+++.+....+.+-..|+.++.+|.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7665332 3222 23444444444 67888999999999999999988888774
No 139
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.20 E-value=0.21 Score=54.12 Aligned_cols=159 Identities=33% Similarity=0.335 Sum_probs=111.5
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
-.++.++.++.+.+..++..|...+..+. ...+++.+..+|...+..+|..|+.+|..+ +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 46788889999888889988888865443 345789999999999999999998866544 2
Q ss_pred hcchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHH-HHhCChhhH
Q 004761 567 RSGAVKALVDLLG-SGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLA-NLSTVGEGR 643 (732)
Q Consensus 567 ~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~-nLa~~~~~r 643 (732)
...+++.|+.++. +.+..++..|..+|..+-. ..++..++..+ +..... +...+. .+. ..|
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~---a~~~~~~~~~---~~r 166 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS---AAAALDAALL---DVR 166 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh---hhhhccchHH---HHH
Confidence 2357899999999 5888999999999987643 23477788888 332211 111110 000 111
Q ss_pred ----HH---HHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 644 ----LA---IAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 644 ----~~---i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.. +.....++.+...+......++..|+.+|..+...+
T Consensus 167 ~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 167 AAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 11 122346888888998888889999999998887754
No 140
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.39 Score=53.77 Aligned_cols=251 Identities=17% Similarity=0.185 Sum_probs=128.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-----
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN----- 520 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~----- 520 (732)
..++|-..|++.-.-++.++++.+..++..+. -..+.+ ..+..|-.+|++.....+-.|+++|..|+.....
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 34566666766667788899999998885541 111121 3577888889999999999999999999864221
Q ss_pred ---HHHHH-Hc-C--CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 521 ---KAMIA-EA-G--AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 521 ---k~~i~-~~-g--~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
.+.++ +. . ..-.+..+|+.|+.+....-...+ +..++=+.+ ..+.-++-|+
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I-------------------~sfvhD~SD---~FKiI~ida~ 399 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLI-------------------PSFVHDMSD---GFKIIAIDAL 399 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHH-------------------HHHHHhhcc---CceEEeHHHH
Confidence 12222 11 1 122344455555444222222222 222111111 1122222222
Q ss_pred HHhccCchhH---------HHHHhhc-------hHHHHHHhcCCChHHHHHHHHHHHHHhC---ChhhHHHHH----HcC
Q 004761 594 FNLSIFHENK---------ARIIQAG-------AVKHLVDLMDPSTGMVDKAVALLANLST---VGEGRLAIA----REG 650 (732)
Q Consensus 594 ~nLs~~~~n~---------~~lv~~G-------~V~~Ll~lL~~~~~l~e~al~iL~nLa~---~~~~r~~i~----~~~ 650 (732)
..||..-+.+ ..+.+.| +|..+.++++-.+...+.|+..|+..-. .++....|. +.|
T Consensus 400 rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~Eg 479 (898)
T COG5240 400 RSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREG 479 (898)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccC
Confidence 2222211100 0111122 3334444443334455666555554422 222211221 111
Q ss_pred --------cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 651 --------GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 651 --------~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
.+.-+...+--.+.-++..|+.+|..+..+-. ..+....+...|...++..++.+|..|..+|+.++..
T Consensus 480 P~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 480 PRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred CCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 12223222222355678888888877665311 1223334556778888889999999999999999865
Q ss_pred cc
Q 004761 723 RE 724 (732)
Q Consensus 723 ~~ 724 (732)
+.
T Consensus 557 da 558 (898)
T COG5240 557 DA 558 (898)
T ss_pred hh
Confidence 54
No 141
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0036 Score=66.59 Aligned_cols=45 Identities=20% Similarity=0.494 Sum_probs=39.4
Q ss_pred cccccCcccCCC--ce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMID--PV-IVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 240 f~Cpi~~~lm~d--PV-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
+.|-||+|-|++ -| +++|+|.|-..||..|+...+..||+|++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 799999999874 44 5899999999999999988777899999854
No 142
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.12 E-value=0.0021 Score=61.50 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=41.1
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.|.|-||.+=++.||++.|||.||-.|-.+-++.| ++|-+|+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhh
Confidence 49999999999999999999999999988888877 7899998754
No 143
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.07 E-value=0.11 Score=61.03 Aligned_cols=235 Identities=17% Similarity=0.134 Sum_probs=132.7
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHH-HHHHHHHHhhcCCc
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQE-HAVTALLNLSINDE 519 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~-~A~~~L~nLs~~~~ 519 (732)
......+..+++.|...+.++|..|++++.-+++.-++.+-. ..+.-|..-+-++....+. .++.....++.-+.
T Consensus 43 dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 43 DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 334567889999999999999999999999998654443311 1233343332233222222 22222222222222
Q ss_pred hHHHHHHcCCHHHHHHHHcCC------CHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHH
Q 004761 520 NKAMIAEAGAIEPLIHVLKSG------NGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
.........+++.+...|..+ ...++..++..|..+-.. ...-.. ...+.+..++.-+.+....+++.|+.+
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 222233344555555555433 223555555555443210 000000 112344445444555567789999999
Q ss_pred HHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH---hcCCHHHH
Q 004761 593 LFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVV---ESGSQRGK 667 (732)
Q Consensus 593 L~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL---~~~s~~~~ 667 (732)
|.+|+....+ ..-.+++..|++=| .........-..+|+.+|+....|.----...+|.+.++. ...+++.+
T Consensus 198 l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELr 274 (1233)
T KOG1824|consen 198 LGHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELR 274 (1233)
T ss_pred HHHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHH
Confidence 9999875432 23446777777777 3344445555666666666443332111123578888888 66788999
Q ss_pred HHHHHHHHHHhcCChH
Q 004761 668 ENAASILLQLCLHSPK 683 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~ 683 (732)
|+++.+|-.+-...|.
T Consensus 275 E~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999888776654
No 144
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.04 E-value=0.026 Score=49.63 Aligned_cols=66 Identities=24% Similarity=0.265 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHH--hcCCHHHHHHHHHHHHHHhcCChHhHHHHHhC
Q 004761 626 VDKAVALLANLST-VGEGRLAIAREGGIPSLVEVV--ESGSQRGKENAASILLQLCLHSPKFCTLVLQE 691 (732)
Q Consensus 626 ~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL--~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~ 691 (732)
....+.+|+|||. ++..+..+.+.|||+.++... +..+|-.+|.|+.++.+||.++++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999986 456788999999999999864 55789999999999999999999998888753
No 145
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.005 Score=61.01 Aligned_cols=54 Identities=17% Similarity=0.386 Sum_probs=48.0
Q ss_pred CccccccCcccCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLELMIDPV----IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
..|.||+|.+.+.+-+ .-+|||.++..|.++.+..+ ..||+|+.++.+.++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence 6899999999988864 34899999999999999876 789999999999999884
No 146
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.4 Score=54.44 Aligned_cols=217 Identities=15% Similarity=0.177 Sum_probs=139.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCH----HHHHHhhccCCHHHHHHHHHHHHHhhcCCchH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAI----PPLLSLLYSEAQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I----~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k 521 (732)
.++.++....+...+++..|..+.+.+...-+ ..++ |.++.-+..........++..|..++....-.
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~--------~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLS--------AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcC--------cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 34566666666677777777766666553321 2333 33333333335567788899999888766666
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
........+|.+.++|.+..++++..+..+|..+...-+|.+.. -.+|.|++.+.+.+.. ...++..|..-...
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~-~~e~~~~L~~ttFV-- 362 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCY-TPECLDSLGATTFV-- 362 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccc-hHHHHHhhcceeee--
Confidence 66667889999999999999999999999999998877666622 3578888888765422 22233333221111
Q ss_pred hHHHHHhhchHHHHHHhc-----CCChHHHHHHHHHHHHHhCChhhHHHHHHc--CcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 602 NKARIIQAGAVKHLVDLM-----DPSTGMVDKAVALLANLSTVGEGRLAIARE--GGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~~r~~i~~~--~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
..|++-.+..++.+| ..+..+...++.++.|+|.--+....+... ..+|.|-..+...-|++|+-+..+|
T Consensus 363 ---~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 363 ---AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred ---eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 112233344444444 456677889999999998865444444331 1344444555556799999999999
Q ss_pred HHHhc
Q 004761 675 LQLCL 679 (732)
Q Consensus 675 ~~L~~ 679 (732)
..+-.
T Consensus 440 ~~l~e 444 (569)
T KOG1242|consen 440 GALLE 444 (569)
T ss_pred HHHHH
Confidence 77765
No 147
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.76 E-value=0.81 Score=46.33 Aligned_cols=178 Identities=16% Similarity=0.083 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCch--hHHHHHhhchHHHH
Q 004761 543 GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG-----TLRGRKDAATALFNLSIFHE--NKARIIQAGAVKHL 615 (732)
Q Consensus 543 e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~Al~aL~nLs~~~~--n~~~lv~~G~V~~L 615 (732)
.-..+|...|-.++++++.|..+.....=-.|-.+|..+ ..-.+-.++..|..|..+++ ....+...++||..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 344688888888999999988888765544444555432 24567789999999988654 45577889999999
Q ss_pred HHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHc----CcH----HHH-HHHHhcCCHHHHHHHHHHHHHHhcCChHhH
Q 004761 616 VDLM-DPSTGMVDKAVALLANLSTVGEGRLAIARE----GGI----PSL-VEVVESGSQRGKENAASILLQLCLHSPKFC 685 (732)
Q Consensus 616 l~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~----~~I----~~L-v~lL~~~s~~~~e~A~~~L~~L~~~~~~~~ 685 (732)
++.+ .++...+.-|..++..+.....|-.-+.+. -+| ..+ .++.+.++++.-.+++.+..+||. ++..+
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar 252 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRAR 252 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHH
Confidence 9999 556666777888888888777775544431 122 222 234456899999999999999998 67766
Q ss_pred HHHHh---CCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 686 TLVLQ---EGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 686 ~~v~~---~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
..+.. .+.-..-...+-.+++..|+.-+.++.++..
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 65543 2222222333334567788888888877653
No 148
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.69 Score=53.91 Aligned_cols=253 Identities=18% Similarity=0.190 Sum_probs=139.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--------hHHHHHhc--C----CHHHHHHhhccC------CHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME--------NRMIIGNC--G----AIPPLLSLLYSE------AQLT 503 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--------~r~~i~~~--G----~I~~Lv~lL~s~------~~~v 503 (732)
....+...++|+..++.++++|+-+...+-...++ .|..+.+. | ++..+.++.+-+ ..++
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l 220 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDL 220 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHH
Confidence 34557777888889999999988887777666553 23333331 2 333444444321 1234
Q ss_pred HHHHHHHHHHhhcCC---c-hHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc---chHHH
Q 004761 504 QEHAVTALLNLSIND---E-NKAMIAEA---GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS---GAVKA 573 (732)
Q Consensus 504 ~~~A~~~L~nLs~~~---~-~k~~i~~~---g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~---g~i~~ 573 (732)
...-+.+|.++.... + +...|-+. =-+=.++.+|.+++.++...+..+|..++..-+.-.-+|.. ..+..
T Consensus 221 ~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 221 VPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 555666666664321 1 11111000 00223455667777777777777777776533322222222 12222
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh-----------hchH----HHHHHhc-CCChHHHHHHHHHHHHHh
Q 004761 574 LVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ-----------AGAV----KHLVDLM-DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 574 Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~-----------~G~V----~~Ll~lL-~~~~~l~e~al~iL~nLa 637 (732)
+..+. .+...+..|+.+|.....+++|-.+-+. ..+| ..+++.| +++..++.+|+.++..|.
T Consensus 301 I~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 301 IMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 22221 2345556666666655554443221111 1122 2456666 777888888888888776
Q ss_pred CChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHhHHH------H-------HhCCCHHHHHHchhc
Q 004761 638 TVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH-SPKFCTL------V-------LQEGAVPPLVGLSQS 703 (732)
Q Consensus 638 ~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~~~~------v-------~~~G~i~~L~~Ll~~ 703 (732)
.....+. .+..|+.+|...++..+...++-+..+... .|+.+.. | +...++..|+.++.+
T Consensus 379 n~~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~ 452 (866)
T KOG1062|consen 379 NESNVRV------MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIAN 452 (866)
T ss_pred ccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 6443332 245577777777888888888888777763 4442221 1 233567788888887
Q ss_pred C
Q 004761 704 G 704 (732)
Q Consensus 704 g 704 (732)
+
T Consensus 453 ~ 453 (866)
T KOG1062|consen 453 A 453 (866)
T ss_pred C
Confidence 7
No 149
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0055 Score=60.76 Aligned_cols=37 Identities=32% Similarity=0.586 Sum_probs=33.0
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhc
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH 272 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~ 272 (732)
|-+.=+|.+|++..+|||+.+.|+.|||.||.+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5455589999999999999999999999999999853
No 150
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.65 E-value=0.071 Score=52.84 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHh----------------hchHHHHHHhc-C------CChHHHHHHHHHHHHHhCC
Q 004761 583 LRGRKDAATALFNLSIFHENKARIIQ----------------AGAVKHLVDLM-D------PSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 583 ~~~~~~Al~aL~nLs~~~~n~~~lv~----------------~G~V~~Ll~lL-~------~~~~l~e~al~iL~nLa~~ 639 (732)
......++..|.||+.....+..+++ ...+..|++++ . ....-.+..+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 34556678888899888777765544 23667777777 3 1234567889999999999
Q ss_pred hhhHHHHHHcC--c--HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh--CCCHHHHHHchh
Q 004761 640 GEGRLAIAREG--G--IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ--EGAVPPLVGLSQ 702 (732)
Q Consensus 640 ~~~r~~i~~~~--~--I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~--~G~i~~L~~Ll~ 702 (732)
++||.-+.+.. . +..|+.++.+.|..-+.-++++|.|+|.....+...+-+ .+++|.|+.-+-
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999998643 3 677777777788888999999999999966555444443 377887777665
No 151
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.63 E-value=0.44 Score=56.90 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=150.6
Q ss_pred HHHHHHHHHHhhcC----CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh-ccCchhHHHHHhcchHHHHHHhh
Q 004761 504 QEHAVTALLNLSIN----DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSL-SVLEEYKAKIGRSGAVKALVDLL 578 (732)
Q Consensus 504 ~~~A~~~L~nLs~~----~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL 578 (732)
|.+=+++|.-|+.- +-....-..-|.+|.++++|++...|.|..-+-+=..+ +.++..+..+...++-...+..|
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 45555666666542 22333344679999999999999888886655544444 45556677777776666677777
Q ss_pred cCC---CHHHHHHHHHHHHHhccC-chhHHHHHhhchHHHHHHhc-CC-ChHHHHHHHHHHHHHh-CChhhHHHHHHcCc
Q 004761 579 GSG---TLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLVDLM-DP-STGMVDKAVALLANLS-TVGEGRLAIAREGG 651 (732)
Q Consensus 579 ~~~---~~~~~~~Al~aL~nLs~~-~~n~~~lv~~G~V~~Ll~lL-~~-~~~l~e~al~iL~nLa-~~~~~r~~i~~~~~ 651 (732)
..+ +++-+..|+.+|..++.+ +-.+....+.+.+...++.| ++ .+-+..-++-+|+.|= ...+.|-.-.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 662 357778888888888774 55777788899999999999 43 4666777777788773 34555555556788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCC----hHhHHHH---H--------hCCCHH----HHHHchhcCChHHHHHH
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHS----PKFCTLV---L--------QEGAVP----PLVGLSQSGTPRAKEKA 712 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~----~~~~~~v---~--------~~G~i~----~L~~Ll~~g~~~~k~kA 712 (732)
...|..+|....++++..|+-+|..+..+. ++....+ + -+..+. .|+.+++.|++-++...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999988742 2211111 1 122333 67888889999888776
Q ss_pred HHHHHHh
Q 004761 713 QQLLSHF 719 (732)
Q Consensus 713 ~~lL~~l 719 (732)
...|..+
T Consensus 724 ~v~ls~~ 730 (1387)
T KOG1517|consen 724 VVALSHF 730 (1387)
T ss_pred HHHHHHH
Confidence 6666554
No 152
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.11 Score=59.08 Aligned_cols=249 Identities=19% Similarity=0.191 Sum_probs=148.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHH---Hhhc---CC-ch
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALL---NLSI---ND-EN 520 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~---nLs~---~~-~~ 520 (732)
..|+.....++..++..|+..|-.|.....-.+ -.....+++++.++..++..|+.++. |... .. .+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 347777788888889999998888775322111 23456788899889999988876654 4431 11 12
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH-h--c
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN-L--S 597 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n-L--s 597 (732)
...+. ..++..+...+.+.+..+|..|+.+|..+-...+ ..|... .=..++.-++ ..+.....-+.++. . +
T Consensus 275 e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe--e~i~QT-LdKKlms~lR--Rkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 275 EEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE--EIIQQT-LDKKLMSRLR--RKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH--HHHHHH-HHHHHhhhhh--hhhhcccchHHHHhcCCcc
Confidence 23333 3468889999999999999999988876643211 111100 0001111011 01111122222221 1 1
Q ss_pred c------------CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCH
Q 004761 598 I------------FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664 (732)
Q Consensus 598 ~------------~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~ 664 (732)
+ .++.-..++..|+-..++.-| ++--++...|++.++.|+.+..+=. ..++..|+.++...-.
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIE 424 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHH
Confidence 1 011234578888888888888 6667889999999999987543211 1257788899988888
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHH
Q 004761 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718 (732)
Q Consensus 665 ~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 718 (732)
.++..|+.+|..+..+ ..+++..++.++.-+..-.+.+|+.+..+|++
T Consensus 425 ~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8999999999888774 22333334444444444444454444444443
No 153
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.45 E-value=0.042 Score=42.43 Aligned_cols=55 Identities=27% Similarity=0.039 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 542 GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 542 ~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
+.+|..|+++|.+++........-....+++.|+.+|++.++.++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999876555444445557999999999999999999999999875
No 154
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.82 Score=53.03 Aligned_cols=267 Identities=16% Similarity=0.118 Sum_probs=164.0
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhccChhhHHHHHhcC-CHHHHHHhhccCCHHHHHHHHHHHHHhhc-CCchHH
Q 004761 447 VKKLIEDLNS--TSNEIQASAAAELRLLAKHNMENRMIIGNCG-AIPPLLSLLYSEAQLTQEHAVTALLNLSI-NDENKA 522 (732)
Q Consensus 447 i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G-~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~~k~ 522 (732)
+-.++..... ++..++..|+.+|.+--.-...|-..=.+-+ .+...+..-.++|.+++..|..+|..+.. .-+...
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543 4567888888888765421111111111112 33445566678899999999999988743 212222
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-h----------------hHHHH-H-hcchHHHHHHhhcCC--
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-E----------------YKAKI-G-RSGAVKALVDLLGSG-- 581 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~----------------~k~~i-~-~~g~i~~Lv~lL~~~-- 581 (732)
.-+....+..-+.-+++.++++...+.-.-.+++..+ + ++... + ..+++|.|+++|...
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 2222334444556677888888777776655554311 1 01111 1 126788888888541
Q ss_pred -----CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-----CCChHHHHHHHHHHHHHhCChhh-HHHHHHcC
Q 004761 582 -----TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-----DPSTGMVDKAVALLANLSTVGEG-RLAIAREG 650 (732)
Q Consensus 582 -----~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~~-r~~i~~~~ 650 (732)
+...-++|..+|.-++. .+...+|++++.++ +++..-.+.|+-+++.+-..++. +-.-+-.+
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 23455666677765543 34445777777776 56667788888888888776653 22333457
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHH-HHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTL-VLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~-v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++|.++.++...+--++.-+.|.|..+|.+.++.+.- ....+.++.|+.-++ +.|++..++.+.+-.|.+
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 8999999999888889999999999999987653332 222344555555443 468888888888877764
No 155
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.30 E-value=0.08 Score=46.60 Aligned_cols=65 Identities=26% Similarity=0.322 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--cCCHHHHHHHHHHHHHhhcC-CchHHHHHH
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY--SEAQLTQEHAVTALLNLSIN-DENKAMIAE 526 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~ 526 (732)
+...++.|.+++..++.++..+.+.|+||.+++.-. ..+|-+++.|+.++.||+.+ ++|+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456678899999999999999999999999998764 45799999999999999876 667777664
No 156
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.031 Score=58.74 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=40.3
Q ss_pred CCccccccCcccC-CCc------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELM-IDP------------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm-~dP------------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
-++-.|-||++=| +-| =-++|||.+--+|++.|++.. .|||.||.|+-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 3677899999874 433 679999999999999999876 79999999953
No 157
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.014 Score=59.23 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCccccccCcccCCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDH-GLNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~ 285 (732)
-.+-.||+|++--.-|.++. |||.||--||..-+.- ...+||.||.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45788999999999999875 9999999999997653 3468999997653
No 158
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.24 E-value=2.1 Score=51.45 Aligned_cols=238 Identities=18% Similarity=0.149 Sum_probs=144.8
Q ss_pred HHHhcCCHHHHHHhhcc-----CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHc----CCC----HHHHHHH
Q 004761 482 IIGNCGAIPPLLSLLYS-----EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLK----SGN----GGAKENS 548 (732)
Q Consensus 482 ~i~~~G~I~~Lv~lL~s-----~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~----~~~----~e~~~~A 548 (732)
.+.+.||+..|+.++.+ .........+.+|.-.+....||+.+.+.|+++.|+..|. .+. .++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 34567999999999964 3455666677777777777899999999999999998874 333 5666666
Q ss_pred HHHHHHhccCchh---HHHHH----------hcchHHHHHHhhcCC----CHHHHHHHHHHHHHhccCchhHHHHHhhch
Q 004761 549 AAALFSLSVLEEY---KAKIG----------RSGAVKALVDLLGSG----TLRGRKDAATALFNLSIFHENKARIIQAGA 611 (732)
Q Consensus 549 a~~L~~Ls~~~~~---k~~i~----------~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~ 611 (732)
..++..|...... ..... ...-+..|++.+.+. ++......+++|-+|+.........+-.-.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 6666666432111 11101 112356666666543 578888889999999997766543322111
Q ss_pred HHHHHHhc--CC----Ch-HHHHHHHHHHHHHhCCh---hhHHHHHHcCcHHHHHHHHhcC--------CHHH-------
Q 004761 612 VKHLVDLM--DP----ST-GMVDKAVALLANLSTVG---EGRLAIAREGGIPSLVEVVESG--------SQRG------- 666 (732)
Q Consensus 612 V~~Ll~lL--~~----~~-~l~e~al~iL~nLa~~~---~~r~~i~~~~~I~~Lv~lL~~~--------s~~~------- 666 (732)
.+.+++= +. +. -..+..+.+..++-.+. .-|..+++.|.+...+++|... +++-
T Consensus 272 -~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 -KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred -HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 2222321 11 11 12223333333333333 2367888999998888887432 3332
Q ss_pred -HHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhc
Q 004761 667 -KENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRN 721 (732)
Q Consensus 667 -~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~ 721 (732)
-..++..|.-||.+....+ .++..++++.|-.|=+..+ ..+-.-|-.+|..+++
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ-~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQ-LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHH-HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 3457788888888655433 3455667777776666543 3455566666666655
No 159
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.015 Score=59.59 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=38.4
Q ss_pred cccccCcccC--CCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELM--IDPV-IVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 240 f~Cpi~~~lm--~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.-|-||++=+ -|-+ ++||.|.|-+.||++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 5699998755 3444 579999999999999999766789999987753
No 160
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=2.1 Score=50.03 Aligned_cols=247 Identities=15% Similarity=0.166 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC----C--HHHHHHHHHHHHHhhcCCchHHHHHHcCCHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE----A--QLTQEHAVTALLNLSINDENKAMIAEAGAIE 531 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~----~--~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~ 531 (732)
+|-.|.+.++.|+.|.+.+.+..+.|.+ .|-+..... | -.+..+++.++..+ .++....+. ++.
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~Lrvl---ain 316 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVL---AIN 316 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHH---HHH
Confidence 4556667777777776665554444433 222333211 1 23444555555222 222211111 234
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhch
Q 004761 532 PLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGA 611 (732)
Q Consensus 532 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~ 611 (732)
.|-++|.+.+-.+|..|+..|..+...+.+...=-+ ..+++.|++.+...++.|+..++.|.... |... .
T Consensus 317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn~~-Nv~~-----m 386 (866)
T KOG1062|consen 317 ILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVNES-NVRV-----M 386 (866)
T ss_pred HHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhccc-cHHH-----H
Confidence 444555555555555555555554433322111111 34566666666777777766666654332 2222 3
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHHhC--ChhhH------HH-------HHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 612 VKHLVDLM-DPSTGMVDKAVALLANLST--VGEGR------LA-------IAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 612 V~~Ll~lL-~~~~~l~e~al~iL~nLa~--~~~~r------~~-------i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
++.|+++| ..+......+..-+..++. .|+.+ .. +++.+.+..++.++.++.++..++++..|+
T Consensus 387 v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy 466 (866)
T KOG1062|consen 387 VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLY 466 (866)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHH
Confidence 34566666 4455555555544444443 11111 01 112234556666665554444444443333
Q ss_pred HHhcCC------------------hHhHHH------------HHhCCCHHHHHHchhcCC--hHHHHHHHHHHHHhhccc
Q 004761 676 QLCLHS------------------PKFCTL------------VLQEGAVPPLVGLSQSGT--PRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 676 ~L~~~~------------------~~~~~~------------v~~~G~i~~L~~Ll~~g~--~~~k~kA~~lL~~l~~~~ 723 (732)
.-...+ +++-+. +-+..++..|..++.+.. ..+|..|..+|--|+...
T Consensus 467 ~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 467 LALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred HHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 322211 011111 112346777888887764 567777777665555443
Q ss_pred c
Q 004761 724 E 724 (732)
Q Consensus 724 ~ 724 (732)
+
T Consensus 547 ~ 547 (866)
T KOG1062|consen 547 H 547 (866)
T ss_pred c
Confidence 3
No 161
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=1.2 Score=54.06 Aligned_cols=214 Identities=18% Similarity=0.223 Sum_probs=126.9
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCchHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC--chhHHHHHhcchHH
Q 004761 497 YSEAQLTQEHAVTALLNLSINDENKAMIAE--AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL--EEYKAKIGRSGAVK 572 (732)
Q Consensus 497 ~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~--~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~ 572 (732)
++.+..+|..+.++|..++..+........ ......|..-+++...-++.....+|..|-.. .+....+. ..|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 345788999999999999876443322221 12333444444444455666666665555321 23333333 2455
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhc------hHHHHHHhc-----CCChHHHHHHHHHHHHHhCChh
Q 004761 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAG------AVKHLVDLM-----DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 573 ~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G------~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~ 641 (732)
-++-.+++.+...++.|..+|..++. .....+.| .+...+..+ .....++-.-+-.+..+...
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e-- 815 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE-- 815 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence 55555688888899999999998873 01111111 333333333 11111111112222222221
Q ss_pred hHHHHHHc----CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHH
Q 004761 642 GRLAIARE----GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717 (732)
Q Consensus 642 ~r~~i~~~----~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~ 717 (732)
...+++. +.+..+..+|.+.+++....|+..+..++..-|+.+-.--.+-+++.+..+++.++-..+.|+.-+|.
T Consensus 816 -~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 -FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred -HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1112222 23455555677889999999999999999988876555555568999999999988899999988887
Q ss_pred Hh
Q 004761 718 HF 719 (732)
Q Consensus 718 ~l 719 (732)
.|
T Consensus 895 kL 896 (1176)
T KOG1248|consen 895 KL 896 (1176)
T ss_pred HH
Confidence 66
No 162
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=0.19 Score=58.19 Aligned_cols=242 Identities=19% Similarity=0.171 Sum_probs=148.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
...+.+|+.....+.+.++-.---+.+.++..+.. .-+++..++.=..++++.++.-|++.+..+-.+ .+
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i 118 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KI 118 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HH
Confidence 34567777777777665554444566666665532 125666666666778999999998888655322 11
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh-H
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN-K 603 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n-~ 603 (732)
. .-.+.+|...++++++.+|..++....++- +.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.+ -
T Consensus 119 ~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 T-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred H-HHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 1 225788999999999999988888877764 34456666779999999999999999999999999999775543 1
Q ss_pred HHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChh--hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 604 ARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGE--GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~--~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
...+..-.+..++..+ +...-..-+.+|.+++.... .+++ ...+..+...+.+.++.+.-.++.+++.+...-
T Consensus 196 ~~~l~~~~~~~lL~al--~ec~EW~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 196 LLELNPQLINKLLEAL--NECTEWGQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred cccccHHHHHHHHHHH--HHhhhhhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 1122223334444444 11111223444555544221 1111 113445555566666666667777777766643
Q ss_pred hHhHHHHHhCCCHHHHHHchhcCC
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQSGT 705 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~~g~ 705 (732)
.. .....-..+-++|+.++....
T Consensus 271 ~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 271 KQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HH-HHHHHHHHhcccceeeecccc
Confidence 33 222222335556666665544
No 163
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=0.45 Score=55.26 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=98.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+-....+.+.+++.++.++..|+-+.+.+-..+ .......|.++.|-.++.++++.+..+|+.+|..+.....+...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 344577888999999999999988888887554 34556679999999999999999999999999988654332110
Q ss_pred -HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 -IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 -i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
......+..++..|..-+.=.+ +.+|-.++.+-.... .-....+..+...|.+.+..+...+.+.+.++......
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 0011122233333322221122 222333332111101 01113455566666677777777777777776665444
Q ss_pred HHHHHhhchHHHHHHhc
Q 004761 603 KARIIQAGAVKHLVDLM 619 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL 619 (732)
....+-..+-++|+.++
T Consensus 273 ~~~~~~~K~~~pl~tll 289 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLL 289 (734)
T ss_pred HHHHHHHHhcccceeee
Confidence 33333334445555555
No 164
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.84 E-value=0.48 Score=53.51 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=81.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH--hcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc----hHHH
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG--NCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE----NKAM 523 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~--~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~----~k~~ 523 (732)
|-+.|....+++.-..+.+++.+..... .+ .+. -.|.+|.|..+|++...+++.+.+..++.++.... .|+.
T Consensus 651 LyE~lge~ypEvLgsil~Ai~~I~sv~~-~~-~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW 728 (975)
T COG5181 651 LYENLGEDYPEVLGSILKAICSIYSVHR-FR-SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW 728 (975)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhhhhc-cc-ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH
Confidence 4566666777766555555555442211 11 011 14889999999999999999999999999987632 2444
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG 581 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~ 581 (732)
|.- -=.|+..|++-+.++|.+|..++..++. .||-..++..|++=|+..
T Consensus 729 MRI---cfeLvd~Lks~nKeiRR~A~~tfG~Is~------aiGPqdvL~~LlnnLkvq 777 (975)
T COG5181 729 MRI---CFELVDSLKSWNKEIRRNATETFGCISR------AIGPQDVLDILLNNLKVQ 777 (975)
T ss_pred HHH---HHHHHHHHHHhhHHHHHhhhhhhhhHHh------hcCHHHHHHHHHhcchHH
Confidence 432 2347788888899999999999988763 445455556666655543
No 165
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.73 E-value=0.43 Score=45.48 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=91.8
Q ss_pred HHHHhhchHHHHHHhc-CCC------hHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHHHH
Q 004761 604 ARIIQAGAVKHLVDLM-DPS------TGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG--SQRGKENAASIL 674 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~------~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e~A~~~L 674 (732)
..+++.|++..|++++ +.. ..+...++.++..|..+.-.-=.......|..++.++... +......|.++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 4678899999999999 332 4566778888888877643222344455788888888653 477889999999
Q ss_pred HHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
-++..+++..-..+.++=-++.|+..++.+++..+.+|..++..|-
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999988887788888777999999999999999999999887663
No 166
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.73 E-value=0.063 Score=41.45 Aligned_cols=55 Identities=20% Similarity=0.093 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 004761 501 QLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSL 555 (732)
Q Consensus 501 ~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~L 555 (732)
+.++..|+++|.+++........-.....++.|+.+|++.+..+|.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999876655444445567899999999998899999999999865
No 167
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.66 E-value=1.2 Score=52.54 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=45.6
Q ss_pred hccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHH
Q 004761 496 LYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALV 575 (732)
Q Consensus 496 L~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv 575 (732)
+.++|+.++..|++++..+-. ..+. ...++++.+.+.++++.+|.+|+-+++++-. -.+..+.+.|.+..+.
T Consensus 101 l~d~N~~iR~~AlR~ls~l~~-----~el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~ 172 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLRV-----KELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILK 172 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcCh-----HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHH
Confidence 344555555555555543321 1111 1235555555555555555555555555432 1234444445555555
Q ss_pred HhhcCCCHHHHHHHHHHHHH
Q 004761 576 DLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 576 ~lL~~~~~~~~~~Al~aL~n 595 (732)
.++.+.+|.++.+|+.+|..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~ 192 (757)
T COG5096 173 ELVADSDPIVIANALASLAE 192 (757)
T ss_pred HHhhCCCchHHHHHHHHHHH
Confidence 55555555555555555544
No 168
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.66 E-value=1.9 Score=46.27 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=95.4
Q ss_pred cCCCHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccC--c-hhHHHHHhhchH
Q 004761 538 KSGNGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIF--H-ENKARIIQAGAV 612 (732)
Q Consensus 538 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--~-~n~~~lv~~G~V 612 (732)
.......|+.++..|..+....-....+... -.+..+...++.+..+-+..|+.++.-++.. . .....++ ..+.
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence 3334555666666655554332222233221 3567788888888776677787777777664 2 3333333 3677
Q ss_pred HHHHHhc-CCC--hHHHHHHHHHHHHHhC---Ch-hhHHHHHHcCcHHHHHH--HHhc-C---------CHHHHHHHHHH
Q 004761 613 KHLVDLM-DPS--TGMVDKAVALLANLST---VG-EGRLAIAREGGIPSLVE--VVES-G---------SQRGKENAASI 673 (732)
Q Consensus 613 ~~Ll~lL-~~~--~~l~e~al~iL~nLa~---~~-~~r~~i~~~~~I~~Lv~--lL~~-~---------s~~~~e~A~~~ 673 (732)
|.|...+ +.. ...+..++.+|+.++. .. +......+ .+..+.. +.+. + ++...-.|+..
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 8888888 433 2333455555555433 21 11111111 1221111 1221 1 12334444333
Q ss_pred HHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 674 LLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 674 L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
-.-|... ++......+ ...++.|..++++.+..+|..|.+.|.+|-+.
T Consensus 210 W~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2222222 222223333 34599999999999999999999999888543
No 169
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.65 E-value=3.6 Score=46.48 Aligned_cols=270 Identities=11% Similarity=0.095 Sum_probs=161.8
Q ss_pred cccCchHHHHHHHhcCCCH-HHHHHHHHHHHHHhccChhhHHHHHhcCCHH-HH-HHhhcc-CCHHHHHHHHHHHHH-hh
Q 004761 441 VTTTPYVKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIP-PL-LSLLYS-EAQLTQEHAVTALLN-LS 515 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~-~L-v~lL~s-~~~~v~~~A~~~L~n-Ls 515 (732)
..|.++...+++....+.+ ..+..++..+...+... .-...+...+.|- .+ ...++. .+..++..|+.+|.+ |-
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 4567778888888776554 46678888888887432 2234444444332 22 334443 467788899999987 32
Q ss_pred cC------CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHH
Q 004761 516 IN------DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKD 588 (732)
Q Consensus 516 ~~------~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~ 588 (732)
.. +.++..+ +...++.-+..+.+++..|.++|..+-. +-..-..+++..........+++.+.++...
T Consensus 208 fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~q 282 (858)
T COG5215 208 FVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQ 282 (858)
T ss_pred HHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 21 2223332 2233344455667888888888877643 2222334444444455566778888888777
Q ss_pred HHHHHHHhccCc---------------hhH--HHHHhhchHHHHHHhc-C--C-----ChHHHHH---HHHHHHHHhCCh
Q 004761 589 AATALFNLSIFH---------------ENK--ARIIQAGAVKHLVDLM-D--P-----STGMVDK---AVALLANLSTVG 640 (732)
Q Consensus 589 Al~aL~nLs~~~---------------~n~--~~lv~~G~V~~Ll~lL-~--~-----~~~l~e~---al~iL~nLa~~~ 640 (732)
|+.....+|... .|. .+..-++++|.|+.+| . + +-+.... |+...+.++..
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd- 361 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD- 361 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence 776665555421 111 1222356899999999 2 1 1123333 33444444332
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 641 EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 641 ~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.|.+. .+..+-+-+++.+-..+|.|+.++..+..+..+.+..-+-..++|.+..++...+--+|..+++++..+.
T Consensus 362 ----~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~ia 436 (858)
T COG5215 362 ----KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIA 436 (858)
T ss_pred ----HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHH
Confidence 22221 2222333467778889999999999988864444444444567899999888777788999999888776
Q ss_pred cc
Q 004761 721 NQ 722 (732)
Q Consensus 721 ~~ 722 (732)
++
T Consensus 437 d~ 438 (858)
T COG5215 437 DH 438 (858)
T ss_pred HH
Confidence 54
No 170
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.60 E-value=0.012 Score=62.55 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=30.1
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWL 270 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~ 270 (732)
.+++.||||...|+||+|++|||+.||.|-..-+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 3689999999999999999999999999966443
No 171
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.59 E-value=0.26 Score=48.82 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHH----------------cCCHHHHHHHHcCC------CHHHHHHHHHHHHHhcc
Q 004761 500 AQLTQEHAVTALLNLSINDENKAMIAE----------------AGAIEPLIHVLKSG------NGGAKENSAAALFSLSV 557 (732)
Q Consensus 500 ~~~v~~~A~~~L~nLs~~~~~k~~i~~----------------~g~l~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~ 557 (732)
+......++.+|.||+..+.....+.. ..++..|+..+..| ...-..+.+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344566777888888877665553332 23577788777662 23456789999999999
Q ss_pred CchhHHHHHhc--ch--HHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhh---chHHHHHH
Q 004761 558 LEEYKAKIGRS--GA--VKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA---GAVKHLVD 617 (732)
Q Consensus 558 ~~~~k~~i~~~--g~--i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~---G~V~~Ll~ 617 (732)
.++.|..+... +. +..|+.++.+.+.--+.-++.+|.|+|...+....+... +++|.|+-
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHh
Confidence 99999998865 44 788888888887777888999999999999888887774 34444433
No 172
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.57 E-value=0.69 Score=53.36 Aligned_cols=224 Identities=11% Similarity=0.089 Sum_probs=127.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcCCchH---HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch-hHHHHH
Q 004761 491 PLLSLLYSEAQLTQEHAVTALLNLSINDENK---AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE-YKAKIG 566 (732)
Q Consensus 491 ~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k---~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~ 566 (732)
.++..|++..+.++++|+.++..++..-.++ ..+...|. .|.+.|....+|+.-..+.+|..+...-. .+..=-
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 3455677888999999999988886532222 22223332 25577887888888777777766643221 111111
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch----hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC--
Q 004761 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE----NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-- 639 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~----n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-- 639 (732)
..+.+|.|..+|++.+..++++++..+..++.... .|+.|. +--.|+++| ..+..+...|...++.++.-
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 24789999999999999999999999999987543 455443 223455666 44556666665555544331
Q ss_pred h--------------h--h-------HHHHHHcCc----HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCC
Q 004761 640 G--------------E--G-------RLAIAREGG----IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692 (732)
Q Consensus 640 ~--------------~--~-------r~~i~~~~~----I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G 692 (732)
| + . -..+.+..+ +|.|+.--+.+...++...+.+|..+...-.+....-+ .-
T Consensus 958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi-ya 1036 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI-YA 1036 (1172)
T ss_pred HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH-HH
Confidence 0 0 0 111123322 33333333445555665555555554442111111111 12
Q ss_pred CHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 693 AVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 693 ~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+.|.|-..+...+.--+.-|..+++++.
T Consensus 1037 v~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred hhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 4555555665666666666777777664
No 173
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.54 E-value=0.7 Score=51.69 Aligned_cols=153 Identities=19% Similarity=0.209 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCH----HHHHHHHHHHHHhccCchhHHH
Q 004761 530 IEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTL----RGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 530 l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
...+.+++.+|+...+..|...|.+++........+....++..|..++.+++. ......++++..|-.+.-.-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 445677888999999989999999999988877777777888999999988753 4555666666665443322223
Q ss_pred HHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 606 lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.+...+|.....+. ..+..+...|+++|.++..+.. -+..+.+.--+..|+..++.++.....+|.+.+-++....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 33333444444444 3355677889999999987766 4566666777999999999988888888999988887754
Q ss_pred h
Q 004761 682 P 682 (732)
Q Consensus 682 ~ 682 (732)
+
T Consensus 245 ~ 245 (713)
T KOG2999|consen 245 P 245 (713)
T ss_pred C
Confidence 3
No 174
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.016 Score=60.18 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=42.1
Q ss_pred CCccccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
|+.=.||+|+.--.+|-++. +|..||-.||-.+..+ +..||+|+.|..-
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASV 347 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchH
Confidence 45678999999999998875 6999999999999984 4789999988654
No 175
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.40 E-value=0.095 Score=47.41 Aligned_cols=71 Identities=27% Similarity=0.307 Sum_probs=59.1
Q ss_pred chHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004761 445 PYVKKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 445 ~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs 515 (732)
..+..|++.|. +.++....-|+.-|..+++..|..|..+.+.|+-..++.++.++|++++.+|+.++..+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45788999994 445666677899999999999999999988999999999999999999999999997653
No 176
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.32 E-value=1 Score=50.96 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=100.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME--NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k 521 (732)
...|..++..|++..+.++..|+.....+++--.. -...+...|. .|..-|...++++.-..+.++..+...-..+
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 34677888999999999999999988888743110 0122333332 3455566678888766666665443211111
Q ss_pred -HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch----hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 522 -AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE----YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 522 -~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
.+--..|.+|.|..+|++....+..+..+.+..++.... .|+.+. +--.|+++|++.+.+.+++|...+..+
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 111135789999999999988899998888888775432 234433 345678888888899999998888777
Q ss_pred cc
Q 004761 597 SI 598 (732)
Q Consensus 597 s~ 598 (732)
+.
T Consensus 758 s~ 759 (975)
T COG5181 758 SR 759 (975)
T ss_pred Hh
Confidence 54
No 177
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.31 E-value=0.88 Score=53.76 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=71.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGA 529 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~ 529 (732)
+.+.+.++|+.+|-.|++.+..+--. . +. ..+++++.+++.++++.++..|+-++.++- .-.+....+.|.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~-----e-l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly--~ld~~l~~~~g~ 167 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVK-----E-LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLY--RLDKDLYHELGL 167 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChH-----H-HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHH--hcCHhhhhcccH
Confidence 34444555555555555555443211 1 11 136778888999999999999999998875 234677778899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 004761 530 IEPLIHVLKSGNGGAKENSAAALFSLSV 557 (732)
Q Consensus 530 l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 557 (732)
+..+..++.+.++.+..+|..+|..+-.
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 9999999999999999999999988753
No 178
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.28 E-value=0.044 Score=41.67 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=25.4
Q ss_pred ccccccCcccCCCcee-cCCCcc--cchHHHHHH-HhcCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVI-VASGQT--YERVFIQKW-LDHGLNICPKTRQT 283 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~-~~~g~t--y~r~~I~~~-~~~~~~~cP~~~~~ 283 (732)
.+.||||...|+-||- ..|.|. ||-...-.. ...+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3689999999999997 468775 887554444 34555789999874
No 179
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.17 E-value=3.6 Score=43.28 Aligned_cols=220 Identities=16% Similarity=0.072 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHH-hcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCchHHHHHH-cCCHHHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIG-NCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~-~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~k~~i~~-~g~l~~L 533 (732)
++-.+.-|+.++.++... ++.|..+- +...-..++.++++ ++..+|.+.+-+++-|+.++...+.+-. .+.+..|
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 344567788888888854 45555443 44455677787765 4678999999999999988766533332 2457777
Q ss_pred HHHHcCCC-HHHHHHHHHHHHHhccCchhHHHH---HhcchHHHHHHhhcCC---CHHHH---------------HHHHH
Q 004761 534 IHVLKSGN-GGAKENSAAALFSLSVLEEYKAKI---GRSGAVKALVDLLGSG---TLRGR---------------KDAAT 591 (732)
Q Consensus 534 v~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i---~~~g~i~~Lv~lL~~~---~~~~~---------------~~Al~ 591 (732)
+++.+... ..+...+++++.+++. ...|..| ...|-+.+-+++|..+ +.+.+ +.+..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 78777543 4455677788888775 2223333 3345455556665432 22221 11111
Q ss_pred --HHHHh-------ccC-------chhHHHHHh--hchHHHHHHhc-CCChH-HHHHHHHHHHHH-hCChhhHHHHHHcC
Q 004761 592 --ALFNL-------SIF-------HENKARIIQ--AGAVKHLVDLM-DPSTG-MVDKAVALLANL-STVGEGRLAIAREG 650 (732)
Q Consensus 592 --aL~nL-------s~~-------~~n~~~lv~--~G~V~~Ll~lL-~~~~~-l~e~al~iL~nL-a~~~~~r~~i~~~~ 650 (732)
-+..| +.+ +.|...+.+ ..++..|.+++ ...++ ...-|+.=+..+ -..|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 01111 111 135556665 45888899998 33333 333344444444 45789999999999
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
+=..++.++.+++++++-+|+.++..+..
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999876543
No 180
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.038 Score=55.26 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=42.5
Q ss_pred CccccccCcccCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 238 PYFRCPLSLELMIDPV----IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
..|+|||++-.|.+-. +.+|||.|.-.++++.- ..+||+|++++..++.++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 6799999999999975 45899999998887665 358999999999876543
No 181
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=1.4 Score=50.81 Aligned_cols=209 Identities=14% Similarity=0.155 Sum_probs=118.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 004761 452 EDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAI 530 (732)
Q Consensus 452 ~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l 530 (732)
..+++.+....--|+..|..+...+ -.| +.-+-++.+|++.-+-++..|+.+|..+..- ++. +. .++
T Consensus 116 kdl~S~n~ye~giAL~GLS~fvTpd-LAR------DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~F 183 (877)
T KOG1059|consen 116 KDLNSSNVYEVGLALSGLSCIVTPD-LAR------DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCF 183 (877)
T ss_pred HHhccCccchhhheecccccccCch-hhH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhH
Confidence 3455666555555666555444332 222 3445688999999999999999999888642 222 11 368
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLSIFHENKARIIQ 608 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~~~n~~~lv~ 608 (732)
+.|.+-|.++++.++-.|..+++.|+. ++.|.-. .-|.+.++|.+. +.=....-++...+|+...+- ..
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----Lg 254 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LG 254 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hh
Confidence 999999999999999999999999987 3333222 236777777643 222344456666677665431 11
Q ss_pred hchHHHHHHhc-CC-ChHHHHHHHHHHH--HHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 609 AGAVKHLVDLM-DP-STGMVDKAVALLA--NLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 609 ~G~V~~Ll~lL-~~-~~~l~e~al~iL~--nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
...+++|.+++ +. ...+.-.|+.++- ++.. .++.- +-+. -++..|-.++...++..+.-++-++.-+....|.
T Consensus 255 KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~-asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 255 KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS-ASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH-HHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence 23556666666 21 1223333333222 1211 11111 1111 1244444445555566666666666555554443
No 182
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.039 Score=59.05 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=38.2
Q ss_pred ccccccCcccCCC---ceecCCCcccchHHHHHHHhcCC--CCCCCCC
Q 004761 239 YFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGL--NICPKTR 281 (732)
Q Consensus 239 ~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~--~~cP~~~ 281 (732)
-|.|||..+--.| |+.+.|||..+|.+|-+-...|. ..||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 4799999998876 89999999999999999999886 5799984
No 183
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.82 E-value=0.95 Score=52.26 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=80.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-c---hHHHH
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-E---NKAMI 524 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~---~k~~i 524 (732)
.|-+.|....+++.-..+.+|+.+...-.-.+..=--.|.+|.|..+|++...+++++++..++.++... + .|+.|
T Consensus 845 vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM 924 (1172)
T KOG0213|consen 845 VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM 924 (1172)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH
Confidence 3557777777776544444444333111000000001378999999999999999999999999998652 2 35544
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG 581 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~ 581 (732)
.- .=.|+.+|+....++|.+|..++..++. .||-..++..|++=|+..
T Consensus 925 RI---cfeLlelLkahkK~iRRaa~nTfG~Iak------aIGPqdVLatLlnnLkvq 972 (1172)
T KOG0213|consen 925 RI---CFELLELLKAHKKEIRRAAVNTFGYIAK------AIGPQDVLATLLNNLKVQ 972 (1172)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHhhhhHHHH------hcCHHHHHHHHHhcchHH
Confidence 32 2346788888889999999999988763 455555556666555543
No 184
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=6.2 Score=45.71 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=136.8
Q ss_pred HHhcCCC--HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc-hHHHHHHc
Q 004761 452 EDLNSTS--NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE-NKAMIAEA 527 (732)
Q Consensus 452 ~~L~s~~--~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~-~k~~i~~~ 527 (732)
+.|.+++ +-++..|+-+|-.|-+.+++ .+-..+.+..++.+|...+-.+...+...+.-|+.. ++ .+..+.-
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~- 228 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL- 228 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-
Confidence 4444443 34455555555555555543 222346788999999888877777777777666653 22 2332221
Q ss_pred CCHHHHHHHHcC-------------CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC----C---HHHHH
Q 004761 528 GAIEPLIHVLKS-------------GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG----T---LRGRK 587 (732)
Q Consensus 528 g~l~~Lv~lL~~-------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~----~---~~~~~ 587 (732)
++..|..+... +.+=.....+.+|.++-..++.-....-..+++.++...+.. + ..++.
T Consensus 229 -avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 229 -AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred -HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence 12222222211 123355667777766643333322222223555555555421 1 11222
Q ss_pred HHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-CCH
Q 004761 588 DAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-GSQ 664 (732)
Q Consensus 588 ~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~ 664 (732)
+.+.-.-+|..+- .....+. .++..|-.+| +.+.+++-.|+..++.||++.....++..+ ...++..|+. .+-
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccch
Confidence 2333333444432 2333333 3677788888 667788888999999999887777777665 7788888873 567
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHH
Q 004761 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 665 ~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
..+..|+..|+.+|.. ++.+.+++ -|++.+.+-+...|
T Consensus 384 SirrravDLLY~mcD~--~Nak~IV~-----elLqYL~tAd~sir 421 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDV--SNAKQIVA-----ELLQYLETADYSIR 421 (938)
T ss_pred HHHHHHHHHHHHHhch--hhHHHHHH-----HHHHHHhhcchHHH
Confidence 7899999999999983 34454433 24444444444443
No 185
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.038 Score=59.02 Aligned_cols=62 Identities=19% Similarity=0.426 Sum_probs=50.3
Q ss_pred ccccccCcccCCCce-----ecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPV-----IVASGQTYERVFIQKWLDHG-LNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV-----~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
.-.||||++-+.-|+ ++.|||-|--.||++|+-+. ...||.|.-+-....+.|-+++|...+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 357999999988885 57899999999999999422 246999988777788999888876653
No 186
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.53 E-value=0.026 Score=60.92 Aligned_cols=44 Identities=25% Similarity=0.530 Sum_probs=36.3
Q ss_pred ccccccCcccCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPV----IVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
--.||+|++=|.+-| ++.|.|+|--.|+.+|+.. +||+||-...
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 347999999999887 3679999999999999864 6888875433
No 187
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.47 E-value=2.1 Score=46.32 Aligned_cols=196 Identities=13% Similarity=0.092 Sum_probs=139.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHH-----HHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRM-----IIGNC--GAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-----~i~~~--G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
.+.+..|+..|..-+-+.+..+.....++.+.....+. .+... ..+..|+.-- +++++--.+-..|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 45677888888888888898888888888766544432 23221 2233333333 355566677778887877
Q ss_pred CCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHH-HHHhc--chHHHHHHhhcCCCHHHHHHHHHH
Q 004761 517 NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKA-KIGRS--GAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 517 ~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~-~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
++.....+.....+..+...+..++-++...|..++..+.. +..... .+... ..+.....+|.+++--+++.+++.
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 77767777778888889999999999999999999988654 333322 23332 567788889999999999999999
Q ss_pred HHHhccCchhHHHHHh----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 593 LFNLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 593 L~nLs~~~~n~~~lv~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
|..|-..+.|...|.. ..-+..++.+| +.+..++-.|..++...+.+|.
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 9999999988765543 45777788888 8889999999999998877653
No 188
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.45 E-value=1.4 Score=52.31 Aligned_cols=267 Identities=16% Similarity=0.152 Sum_probs=142.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHc
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEA 527 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~ 527 (732)
.|++.+.+.+.+.+..|+.-|..=-..+.-+-..=.+...+..|+++|...+.++|..|+.+|+-|+.- .+.+. .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l----e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL----E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH----H
Confidence 688899888888888887755432222111111112335688899999999999999999999988732 11111 0
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHH-HHhccCchhHHHHHhc----chHHHHHHhhcC-C-CHHHHHHHHHHHHHhcc-C
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAAL-FSLSVLEEYKAKIGRS----GAVKALVDLLGS-G-TLRGRKDAATALFNLSI-F 599 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L-~~Ls~~~~~k~~i~~~----g~i~~Lv~lL~~-~-~~~~~~~Al~aL~nLs~-~ 599 (732)
..++.|..-+-+|....+..+.-.| ..++............ ...|.+...+.. + ...++-.++-.+..+-+ .
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 1233334333334444443333332 2222222111111111 223344433322 2 23345555555554322 2
Q ss_pred chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHH
Q 004761 600 HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQL 677 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L 677 (732)
..--.. ...++...++.-+ +....++.+++.+|+.|+..-. +.... +.+..|++-|. +.++....--+.+|..+
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHH--HHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 111111 2345556666666 6677788999999999976432 22211 12344444332 23444445556777777
Q ss_pred hcCChHhHHHHHhCCCHHHHHHch---hcCChHHHHHHHHHHHHhhcccc
Q 004761 678 CLHSPKFCTLVLQEGAVPPLVGLS---QSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 678 ~~~~~~~~~~v~~~G~i~~L~~Ll---~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
|+..+.... ---..++|.+.... +..+++.+++....|..|-..-+
T Consensus 241 ~r~ag~r~~-~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 241 CRQAGHRFG-SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHhcchhh-cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 774322100 01124678888877 67788999999999988854433
No 189
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.43 E-value=0.39 Score=39.63 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcC
Q 004761 586 RKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREG 650 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~ 650 (732)
.+.|+.|+.|+++.+.....+-+.++|+.++++. ++...++-.|..+|..++.+.+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 6889999999999888888788889999999998 5667788889999999999999998887765
No 190
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.051 Score=57.48 Aligned_cols=54 Identities=30% Similarity=0.531 Sum_probs=48.7
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
+...|.+++-.|.|||-+..|..||-..|-.|+... .+-|.||+++..++|++-
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIKL 92 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCccccccceee
Confidence 345799999999999999999999999999999874 678999999999998874
No 191
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.16 E-value=14 Score=41.93 Aligned_cols=227 Identities=14% Similarity=0.047 Sum_probs=134.0
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhcCC--chHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCchhHHHHHhc-
Q 004761 493 LSLLYSEAQLTQEHAVTALLNLSIND--ENKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKIGRS- 568 (732)
Q Consensus 493 v~lL~s~~~~v~~~A~~~L~nLs~~~--~~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~- 568 (732)
+..|.+..+..-..|..++..++.-+ .+ ...|.+..++.....+. ...+.+++.++.+.+...+....+...
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~----~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN 175 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNS----LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSN 175 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccc----cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhh
Confidence 44556666776666767666665321 11 01233333444343443 558889999999998866655555544
Q ss_pred chHHHHHH-hhcCC-CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-----CCChHHHHHHHHHHHHHhCCh-
Q 004761 569 GAVKALVD-LLGSG-TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-----DPSTGMVDKAVALLANLSTVG- 640 (732)
Q Consensus 569 g~i~~Lv~-lL~~~-~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~- 640 (732)
.++-.++. -++++ +..++-.|++||++-+.. .+..+...+-...+++.. .++.+++..|.++|..+..--
T Consensus 176 ~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f--v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 176 VILFAIVMGALKNETTSAVRLAALKALMDSLMF--VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH--HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 33333333 35554 466788899999983221 222333344444444443 567788888999888775421
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh----------------CCCHHHHHHchhcC
Q 004761 641 EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ----------------EGAVPPLVGLSQSG 704 (732)
Q Consensus 641 ~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~----------------~G~i~~L~~Ll~~g 704 (732)
..-.-..+..........+.+.++++...|+..-..+|...-+.--.... .+++|.|+.|+..+
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 11112222222344455778889999999998877888742221111111 24789999999874
Q ss_pred Ch-------HHHHHHHHHHHHhhccccC
Q 004761 705 TP-------RAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 705 ~~-------~~k~kA~~lL~~l~~~~~~ 725 (732)
++ .....|..+|+++.....+
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd 361 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKGD 361 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhhh
Confidence 32 3667888899998766543
No 192
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.91 E-value=3 Score=48.97 Aligned_cols=240 Identities=18% Similarity=0.137 Sum_probs=149.6
Q ss_pred hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHH-HhhcCCchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHh
Q 004761 478 ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALL-NLSINDENKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSL 555 (732)
Q Consensus 478 ~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~-nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~L 555 (732)
.-|...++.|+...|+.+.........-.+..+|. .+++..+- ....++++...++... .-....++-++.||
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 44556677899999999988777788877778876 33322111 1223455555544322 11234577888888
Q ss_pred ccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHH-HHh-hchHHHHHHhc-CCChHHHHHHHH
Q 004761 556 SVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKAR-IIQ-AGAVKHLVDLM-DPSTGMVDKAVA 631 (732)
Q Consensus 556 s~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~-lv~-~G~V~~Ll~lL-~~~~~l~e~al~ 631 (732)
+..+ ..|..|...-+++.+-.++-.+++..+..++..+.||..++.--.+ +++ ...++.....+ .........+++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~ 649 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAG 649 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccc
Confidence 8755 4466677665666666667778899999999999999998765443 333 33444444444 323333334445
Q ss_pred HHHHHhCChhh-HHHHH-HcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHH
Q 004761 632 LLANLSTVGEG-RLAIA-REGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 632 iL~nLa~~~~~-r~~i~-~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
.+..+....++ ...+. -..+...++.++.++++..+...+.+.+++.....+....+.....++.+..+-+-.-...+
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~ 729 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKR 729 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhh
Confidence 55544433332 22132 34578888889999999999999999998777666666777666666665554443334455
Q ss_pred HHHHHHHHHhhcc
Q 004761 710 EKAQQLLSHFRNQ 722 (732)
Q Consensus 710 ~kA~~lL~~l~~~ 722 (732)
+.|...|...-++
T Consensus 730 ~~~~~~l~~a~~~ 742 (748)
T KOG4151|consen 730 EDAAPCLSAAEEY 742 (748)
T ss_pred hhhhhHHHHHHHh
Confidence 5555555544433
No 193
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.86 E-value=2.8 Score=43.20 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhhcCCc--hHHHHHHcCCHHHHH
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA-----QLTQEHAVTALLNLSINDE--NKAMIAEAGAIEPLI 534 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~-----~~v~~~A~~~L~nLs~~~~--~k~~i~~~g~l~~Lv 534 (732)
.-.|+..+.-+|.+ ++.|..+.++...-.|..+|+..+ ..++-..+.+++.|...++ ....+...+.+|..+
T Consensus 67 VcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 34677778888875 689999999887777888886432 4567888888888877533 345566788999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--------cchHHHHHH-hhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 535 HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--------SGAVKALVD-LLGSGTLRGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 535 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
..+..|+.-.+..|+-++..+..++..-..+.. ..++..++. +.+..+++..+..+++-..|+.++..+..
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 999999988999999999888777665444432 133444444 34567899999999999999999988876
Q ss_pred HHh
Q 004761 606 IIQ 608 (732)
Q Consensus 606 lv~ 608 (732)
+.+
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 194
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.84 E-value=1.2 Score=52.20 Aligned_cols=192 Identities=18% Similarity=0.141 Sum_probs=128.8
Q ss_pred CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH-HhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHH
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALF-SLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFN 595 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~n 595 (732)
...+...+..|+...|+.+...++++++..+..+|. .+....+ + ....++++...+.... .-....++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 344556668899999999999998888888887777 2222110 0 1134566655554332 2345579999999
Q ss_pred hccCch-hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHH-HHH-cCcHHHHHHHHhcCCHHHHHHHH
Q 004761 596 LSIFHE-NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLA-IAR-EGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 596 Ls~~~~-n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~-i~~-~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|++.++ .|.++++.-.++.+-+++ ..+...+..++..+.||..++..-.. +.+ ..+++.....+........-.++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 988654 566788877777766666 77888899999999999998875443 344 34677777777665555555566
Q ss_pred HHHHHHhcCChHhHHHHH-hCCCHHHHHHchhcCChHHHHHHHH
Q 004761 672 SILLQLCLHSPKFCTLVL-QEGAVPPLVGLSQSGTPRAKEKAQQ 714 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~-~~G~i~~L~~Ll~~g~~~~k~kA~~ 714 (732)
+++..+......+|..+. -......+..+++++.+.+++....
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 666656665555555322 2345677777777777777655444
No 195
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.72 E-value=0.85 Score=39.96 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=48.9
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHh
Q 004761 569 GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 569 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa 637 (732)
..+++++..+.+.+.+++..|+.+|+|++........-.-..+...|.+++ ++++.+ ..++.+|.+|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHh
Confidence 578999999999999999999999999986543322112256777777777 666664 44556666553
No 196
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.66 E-value=4.9 Score=42.82 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=117.4
Q ss_pred CHHHHH-HhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh--HH-
Q 004761 488 AIPPLL-SLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY--KA- 563 (732)
Q Consensus 488 ~I~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~- 563 (732)
.+..|+ ..+.+.++.+++.|+.+|+-.+.-+. .++. ..++.+...++.++.+++..|+.+++.+...... -.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 333333 56788999999999999998887543 2222 2477788888888899999999999998653221 11
Q ss_pred ------HHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-C----CChHHHHHHHHH
Q 004761 564 ------KIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-D----PSTGMVDKAVAL 632 (732)
Q Consensus 564 ------~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~----~~~~l~e~al~i 632 (732)
.......+..+.+++.+.++.++..|+..+..|-..+.... ...++..|+-+. + .+..++..--..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 12233577888889998899999999999988866543222 133444444333 2 233444333344
Q ss_pred HHHHhCChhhHHHHHHcCcHHHHHHHHhcCC----HHH---HHHHHHHHHHHhc
Q 004761 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGS----QRG---KENAASILLQLCL 679 (732)
Q Consensus 633 L~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s----~~~---~e~A~~~L~~L~~ 679 (732)
+-..|......+......+++.+-.+..... +.. -...+..+..++.
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 5566766655556666667788777775432 211 3345566666665
No 197
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.52 E-value=8.2 Score=45.35 Aligned_cols=257 Identities=18% Similarity=0.192 Sum_probs=144.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc----
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE---- 519 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~---- 519 (732)
...+++=..|++...-+..+|++.+..+...+.. .+. -++..|-.++++..+.++-.|+++|..++.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 3456666777888888889999999999865432 122 3788888889999999999999999998752 21
Q ss_pred -hH--H-HHHHc---CCHHHHHHHHcCCCHHHHHH----HHHHHHHhccCchhHHHHH-------------hcchHHHHH
Q 004761 520 -NK--A-MIAEA---GAIEPLIHVLKSGNGGAKEN----SAAALFSLSVLEEYKAKIG-------------RSGAVKALV 575 (732)
Q Consensus 520 -~k--~-~i~~~---g~l~~Lv~lL~~~~~e~~~~----Aa~~L~~Ls~~~~~k~~i~-------------~~g~i~~Lv 575 (732)
|+ . .+-+. =....+..+|+.|+.+.... .+....+++. ++|..+. ..+.+..|.
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 11 1 11111 12444566777776543332 3333333332 2221111 114455555
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhcc-CchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHH
Q 004761 576 DLLGS-GTLRGRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIP 653 (732)
Q Consensus 576 ~lL~~-~~~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~ 653 (732)
.+|+. |.-+-+++...++-.+.. +++.|.. +...|.+++ .+......+..+|..|-.. |-.+.....-+.
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefI-EDce~~~i~~rILhlLG~E--gP~a~~Pskyir 469 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFI-EDCEFTQIAVRILHLLGKE--GPKAPNPSKYIR 469 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHH-HhccchHHHHHHHHHHhcc--CCCCCCcchhhH
Confidence 55553 234445555555544443 3333322 333455555 0111223344444444221 000001112244
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 654 SLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 654 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.+...+.-.+..++..|+.+|..+..+++. ....+.-.|...+.+.+..+++.|...|+.+.+
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 444444335677888899999888854432 333455667777778889999999999999984
No 198
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.38 E-value=9 Score=41.08 Aligned_cols=178 Identities=19% Similarity=0.197 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC---chhHHHHHhcchHHHH
Q 004761 500 AQLTQEHAVTALLNLSINDENKAMIA--EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL---EEYKAKIGRSGAVKAL 574 (732)
Q Consensus 500 ~~~v~~~A~~~L~nLs~~~~~k~~i~--~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~~~g~i~~L 574 (732)
....++.++..|.++-........+. ....+..+...++.|..+-+..|+.++.-++.. ......+.. ...|.|
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L 134 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVL 134 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHH
Confidence 34555555555555432221112221 123466777888888766666676666666554 122333333 366888
Q ss_pred HHhhcCCC--HHHHHHHHHHHHHhccCchhHH-HHH-hhchHHHHHHh--c--CC---------ChHHHHHHHHHHHHHh
Q 004761 575 VDLLGSGT--LRGRKDAATALFNLSIFHENKA-RII-QAGAVKHLVDL--M--DP---------STGMVDKAVALLANLS 637 (732)
Q Consensus 575 v~lL~~~~--~~~~~~Al~aL~nLs~~~~n~~-~lv-~~G~V~~Ll~l--L--~~---------~~~l~e~al~iL~nLa 637 (732)
...+.+++ +..+..++.||.-++....+-. .+. -...+..+... . +. +..+...|+...+-|.
T Consensus 135 ~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLl 214 (309)
T PF05004_consen 135 KRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLL 214 (309)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHH
Confidence 88887654 4455566666666554322111 111 01222222111 1 11 2457777777777665
Q ss_pred CChhh-H-HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 638 TVGEG-R-LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 638 ~~~~~-r-~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
..-+. . .... ...++.|+.+|.+.+..++..|-.+|.-|..
T Consensus 215 t~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 215 TTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred hcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 43332 2 2222 3469999999999999988887777665543
No 199
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.30 E-value=5.2 Score=43.92 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=135.7
Q ss_pred chHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCH-HHHHHHHHHHHHhhcCCchH
Q 004761 445 PYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQ-LTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 445 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~-~v~~~A~~~L~nLs~~~~~k 521 (732)
+.|..+++.|.+. +...++.++-.|..-+. ++..|..+...|.+..++..+.. .+. ..--.++.++.-++.+..+.
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 4478888888843 34677778878877775 46889999999999999999953 333 33333444555566665555
Q ss_pred HHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc---------CCCHHHHHHHHH
Q 004761 522 AMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG---------SGTLRGRKDAAT 591 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---------~~~~~~~~~Al~ 591 (732)
..+...+.+..++.++.-... ......- .....+-..+. ...+..+.+++. ......+..|+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 555556666666777761100 0000000 00000000110 011121222221 112234555667
Q ss_pred HHHHhcc------------C---chhHHHHHhhchHHHHHHhc-C---C-------------ChHHHHHHHHHHHHHhCC
Q 004761 592 ALFNLSI------------F---HENKARIIQAGAVKHLVDLM-D---P-------------STGMVDKAVALLANLSTV 639 (732)
Q Consensus 592 aL~nLs~------------~---~~n~~~lv~~G~V~~Ll~lL-~---~-------------~~~l~e~al~iL~nLa~~ 639 (732)
+|..++. . .--++.+...|++..+++++ + . +-...+.++.+|.+....
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 7766631 0 11356677888999988887 2 1 112456788999988654
Q ss_pred h-hhHHHHHHc--CcHHHHHH-HHhc---CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHH
Q 004761 640 G-EGRLAIARE--GGIPSLVE-VVES---GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695 (732)
Q Consensus 640 ~-~~r~~i~~~--~~I~~Lv~-lL~~---~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~ 695 (732)
. +++...... +.++.+.. ++.. ........++.++.|++.++|+.+..+...++..
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~ 315 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQ 315 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhcc
Confidence 3 345444442 22333333 3322 2233467899999999999988888776554433
No 200
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.22 E-value=0.77 Score=40.23 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=54.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh--CCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ--EGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~--~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.++.++..+...+.+++.+|+.+|.+++.... ..++. ..++..|..++...++++|..|..+-++|+
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 57888888888999999999999999998432 23332 457889999999999999988877777765
No 201
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.22 E-value=0.37 Score=48.75 Aligned_cols=120 Identities=25% Similarity=0.290 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhccCc---hhHHHHHhcchHHHHHHhhcCC---------------CHHHHHHHHHHHHHhccCchhH
Q 004761 542 GGAKENSAAALFSLSVLE---EYKAKIGRSGAVKALVDLLGSG---------------TLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 542 ~e~~~~Aa~~L~~Ls~~~---~~k~~i~~~g~i~~Lv~lL~~~---------------~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
...|++|.-+|.|++..= .+-+.|.. -++..|++..-.. ...-++.|+.+|..||..+.|.
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~-PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV 158 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIAR-PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV 158 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHH-HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence 357888888888887521 22233322 2445555554322 1244789999999999998888
Q ss_pred HHHHhhc-------hHHHHHHhc--CCChHHHHHHHHHHHHHhCChhh--HHHHHHcCcHHHHHHHHhcC
Q 004761 604 ARIIQAG-------AVKHLVDLM--DPSTGMVDKAVALLANLSTVGEG--RLAIAREGGIPSLVEVVESG 662 (732)
Q Consensus 604 ~~lv~~G-------~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~--r~~i~~~~~I~~Lv~lL~~~ 662 (732)
..++..+ .+..|++++ .++...+|-|+.+|.+||...+. |....+.+.|..|+.+++..
T Consensus 159 DliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 159 DLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred ceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 7666543 556677777 56778899999999999987664 34345677899999999753
No 202
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=10 Score=46.53 Aligned_cols=239 Identities=20% Similarity=0.210 Sum_probs=129.2
Q ss_pred cCchHHHHH---H-HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 443 TTPYVKKLI---E-DLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC--GAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 443 ~~~~i~~Lv---~-~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
+++.|..+. . ..++.+..+|.++-+.|..++.. +.......+. .....|..-+.+.....+..++.+|..|-.
T Consensus 648 ~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 648 TESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK 726 (1176)
T ss_pred cchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 344555444 2 22344778899999999998865 2222111110 112223333334445556666666655432
Q ss_pred C-C-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CchhHHHHHhcchHHHHHHhhcCC---C-HHHH
Q 004761 517 N-D-ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV----LEEYKAKIGRSGAVKALVDLLGSG---T-LRGR 586 (732)
Q Consensus 517 ~-~-~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~i~~Lv~lL~~~---~-~~~~ 586 (732)
. + +....+.. .++-++-.++..+...+.+|..+|..+.. .++..+. ....|...+.++..+ + ....
T Consensus 727 ~~~~e~~~~i~k--~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~ 802 (1176)
T KOG1248|consen 727 LLSAEHCDLIPK--LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVV 802 (1176)
T ss_pred hccHHHHHHHHH--HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHH
Confidence 1 2 23333322 24444444577789999999999998873 1111111 112555555555543 2 2222
Q ss_pred HHHHHHHHHhccCchhHHHHHhhchHHHHHHh----c-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHh
Q 004761 587 KDAATALFNLSIFHENKARIIQAGAVKHLVDL----M-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 587 ~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~l----L-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~ 660 (732)
-..+.++..+.... ..++..+.+..+++. | +.++.++..|++.+..++. .|+....--..-.++.+..+++
T Consensus 803 as~Ivai~~il~e~---~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~ 879 (1176)
T KOG1248|consen 803 ASDIVAITHILQEF---KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH 879 (1176)
T ss_pred HHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH
Confidence 22245555554322 223444444444444 4 7789999999999998865 3432222222235788888887
Q ss_pred cCCHHHHHHHHHHHHHHhcC-ChHhHHHHH
Q 004761 661 SGSQRGKENAASILLQLCLH-SPKFCTLVL 689 (732)
Q Consensus 661 ~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~ 689 (732)
......+...-..|-.|++. +.+....++
T Consensus 880 d~k~~~r~Kvr~LlekLirkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIRKFGAEELESFL 909 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCHHHHHhhC
Confidence 77777787777777777763 334333333
No 203
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=1.7 Score=49.80 Aligned_cols=218 Identities=20% Similarity=0.155 Sum_probs=135.9
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc------hhHHHH
Q 004761 492 LLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE------EYKAKI 565 (732)
Q Consensus 492 Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~------~~k~~i 565 (732)
|..+....|..++.+|+..|..|+..-.. ..-.....++.+.+....+|..|..+++-..... ++-+.=
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 66677778888888888888777642111 1123556678888888889988877766554311 111111
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHH--hC-----
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANL--ST----- 638 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nL--a~----- 638 (732)
....++..+.+.+++.+..++..|+++|..+-...+ .++..-.=+.++.-+.....--+..-....+- ++
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 112467788888888888888888888876644321 12221111222221100000011111222222 00
Q ss_pred -------ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHH
Q 004761 639 -------VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEK 711 (732)
Q Consensus 639 -------~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~k 711 (732)
..++...|+.+|+-..++.-++..--++++.|+..+..|+...|...... +..|+.+++..-..+|.+
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhccHHHHHHHH
Confidence 11234567778888888888887777899999999999999888766544 567888888888889999
Q ss_pred HHHHHHHhhcc
Q 004761 712 AQQLLSHFRNQ 722 (732)
Q Consensus 712 A~~lL~~l~~~ 722 (732)
|...|+.+...
T Consensus 430 ai~aL~~Is~~ 440 (823)
T KOG2259|consen 430 AIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHH
Confidence 99888887654
No 204
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=31 Score=40.36 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=131.3
Q ss_pred HHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHc-CCCHH
Q 004761 465 AAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLK-SGNGG 543 (732)
Q Consensus 465 Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~-~~~~e 543 (732)
.+-+.-+|+.+-+.....+.. ++..|..+|.+....++.-|+..+..|+........+... .+.++..|+ ..+..
T Consensus 309 VLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 344444555444333444443 5667888888888888888888888887776555555544 777888888 55788
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cc-------hhHH-------HHHh
Q 004761 544 AKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-FH-------ENKA-------RIIQ 608 (732)
Q Consensus 544 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~-------~n~~-------~lv~ 608 (732)
+|..|+..|..++...+.+.. +..|+.+|.+.+...++.-..=+.-|+. +. +.-- ..++
T Consensus 385 irrravDLLY~mcD~~Nak~I------V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVSNAKQI------VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHHHhchhhHHHH------HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 999999999998875554443 3556777776666666543332333322 10 1111 2233
Q ss_pred hchHHHHHHhcCCChHHHHHHHHHHHHHhCChhhHHHHHHcCc--HHHHHH---------------HH----hcCCHHHH
Q 004761 609 AGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGG--IPSLVE---------------VV----ESGSQRGK 667 (732)
Q Consensus 609 ~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~--I~~Lv~---------------lL----~~~s~~~~ 667 (732)
.++-..++++.-.+++++.-|+..+-.....+.+.+.|++.|| +...-. ++ ...++.++
T Consensus 459 deVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr 538 (938)
T KOG1077|consen 459 DEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTR 538 (938)
T ss_pred HHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHH
Confidence 4455555555533556666666555444343445555555443 222222 22 22345555
Q ss_pred HHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
---+.+...++...|+....+. ..+..-.+.-+.++++.|.+-|.+.
T Consensus 539 ~lLLtTyiKl~nl~PEi~~~v~-----~vFq~~~n~~D~ElQqRa~EYLql~ 585 (938)
T KOG1077|consen 539 ALLLTTYIKLINLFPEIKSNVQ-----KVFQLYSNLIDVELQQRAVEYLQLS 585 (938)
T ss_pred HHHHHHHHHHHhhChhhhHHHH-----HHHHhhcccCCHHHHHHHHHHHHHH
Confidence 5555555555555555333221 1111222223456666666655544
No 205
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.77 E-value=4 Score=45.22 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=97.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCch----hHHHHHhcchHHHHHHhhcCCC-----H--HHHHHHHHHHHHhccC
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEE----YKAKIGRSGAVKALVDLLGSGT-----L--RGRKDAATALFNLSIF 599 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~~-----~--~~~~~Al~aL~nLs~~ 599 (732)
..+..+++..+.+-+-.|+-....+...++ +|..+.+.-+.+.+-.+|.+.+ + --+.-++..|...|..
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 335556665566666666666666655443 5666777756688888887532 2 2344567777788887
Q ss_pred ch--hHHHHHhhchHHHHHHhc--CC------ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCC-HHHHH
Q 004761 600 HE--NKARIIQAGAVKHLVDLM--DP------STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGS-QRGKE 668 (732)
Q Consensus 600 ~~--n~~~lv~~G~V~~Ll~lL--~~------~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s-~~~~e 668 (732)
++ ....+++ .+|.|++++ .. +..+.+.+..+|..+++++.|...++..|+++.+.++-.-.+ ....+
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 76 3445664 789999998 22 234889999999999999999999999999999998654321 22233
Q ss_pred HHHHHHHHHh
Q 004761 669 NAASILLQLC 678 (732)
Q Consensus 669 ~A~~~L~~L~ 678 (732)
-|+.++.-+.
T Consensus 172 lal~Vlll~~ 181 (698)
T KOG2611|consen 172 LALKVLLLLV 181 (698)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 206
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.70 E-value=4.3 Score=48.22 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=140.4
Q ss_pred ccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHh--cchHH
Q 004761 497 YSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVK 572 (732)
Q Consensus 497 ~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~ 572 (732)
.+..+...-.|.+++...+.. ..+...+- -.+...+..+.. ..+-++..|..+++..+.. ..+.. .+++.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild 533 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILD 533 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHH
Confidence 345677666777777765532 22222111 123333333433 3455777777777776621 12222 27888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHc
Q 004761 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIARE 649 (732)
Q Consensus 573 ~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~ 649 (732)
.|.++....+.++.-.-+.+|...+..+.......++-+.|..+.++ +.++-+...+-.++..|+....+..-+. .
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e 612 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-E 612 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-H
Confidence 88888887778888888889999999888777777888888888887 5677788888888888876443333322 2
Q ss_pred CcHHHHHHHHhcCC----HHHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHch-hcCChHHHHHHHHHHHHhh
Q 004761 650 GGIPSLVEVVESGS----QRGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLS-QSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 650 ~~I~~Lv~lL~~~s----~~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll-~~g~~~~k~kA~~lL~~l~ 720 (732)
..||.++..|.... .....-|+.+|..+.++.|. .-+.+.. -++|++.+.. .+++..+-..|.++|+.+=
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 46999999997644 55566778888878776544 2233333 3566666654 4556677788888888773
No 207
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.65 E-value=9.1 Score=37.38 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVL 537 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL 537 (732)
++.++..++..+..|+...+. +++ ..++.+...|+++++.++..|+.+|..|...+--|. +...+..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence 356788899999988866542 232 468889999999999999999999999875433221 112247778888
Q ss_pred cCCCHHHHHHHHHHHHHhccC
Q 004761 538 KSGNGGAKENSAAALFSLSVL 558 (732)
Q Consensus 538 ~~~~~e~~~~Aa~~L~~Ls~~ 558 (732)
.+.+++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999988764
No 208
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.58 E-value=14 Score=41.20 Aligned_cols=186 Identities=18% Similarity=0.158 Sum_probs=111.2
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCC----chHHHHHHcCCHHHHHHHHcCCC-------HHHHHHHHHHHHHhccCch
Q 004761 492 LLSLLYSEAQLTQEHAVTALLNLSIND----ENKAMIAEAGAIEPLIHVLKSGN-------GGAKENSAAALFSLSVLEE 560 (732)
Q Consensus 492 Lv~lL~s~~~~v~~~A~~~L~nLs~~~----~~k~~i~~~g~l~~Lv~lL~~~~-------~e~~~~Aa~~L~~Ls~~~~ 560 (732)
+..++...+..-+-.|+-....+..++ .+|..+.++=+++.+-++|.+++ .-.+..+..+|...+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 334444444455555665666666543 36778888878888888887642 2356677778877777665
Q ss_pred hHHHHHhcchHHHHHHhhcCC-C------HHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHH-
Q 004761 561 YKAKIGRSGAVKALVDLLGSG-T------LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVAL- 632 (732)
Q Consensus 561 ~k~~i~~~g~i~~Lv~lL~~~-~------~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~i- 632 (732)
-...---...||.|.+++..+ + .....++-.+|+.++..+.....++..|+++.+.++-.....-.+.++++
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 321111114689999998743 2 23678899999999999999999999999999998762111112334433
Q ss_pred -HHHHhC----ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 633 -LANLST----VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 633 -L~nLa~----~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
+-.++. .++.-..+.. .|..+..=+.......+-..+.+|..+-.
T Consensus 176 Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 333322 2222222221 13333333333445566677777765433
No 209
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.43 E-value=2.1 Score=48.05 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=108.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCC----hHHHHHHHHHHHHHhCChhhHHH
Q 004761 571 VKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPS----TGMVDKAVALLANLSTVGEGRLA 645 (732)
Q Consensus 571 i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~----~~l~e~al~iL~nLa~~~~~r~~ 645 (732)
...+.+++.+++...+..|++-|..++....-...++...++..|..++ +.+ ..+...++..+..|-.+.-.-=.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 3556778888888888889999999999999999999999999999999 433 34444555555554443221001
Q ss_pred HHHcCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 646 IAREGGIPSLVEVVE--SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 646 i~~~~~I~~Lv~lL~--~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.....+|.....+.. .....+-..|+..|-++..++....+.+.++--+..|+..++.++.+...+|..++..+-.
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 111223444444432 2344566788999999888887778888899899999999999999999999888876643
No 210
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=91.29 E-value=0.089 Score=55.83 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=40.8
Q ss_pred ccccCcccCCCceecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHG-LNICPKTRQTLAHT 287 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~ 287 (732)
+|-||-+==+|=-|-+|||-.|-.|+..|..++ +.+||+||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 599999988888788999999999999999653 68999999877554
No 211
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.08 E-value=1.1 Score=43.92 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=62.2
Q ss_pred HHHHhhchHHHHHHhc----C------CChHHHHHHHHHHHHHhCChhhHHHHHHc-CcHHHHHHHHhcCCHHHHHHHHH
Q 004761 604 ARIIQAGAVKHLVDLM----D------PSTGMVDKAVALLANLSTVGEGRLAIARE-GGIPSLVEVVESGSQRGKENAAS 672 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL----~------~~~~l~e~al~iL~nLa~~~~~r~~i~~~-~~I~~Lv~lL~~~s~~~~e~A~~ 672 (732)
..+++.|++..|+++| . .+......++.+|..|..+..|...+... +++..|+..|.+.+..++..|+.
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4677889999999988 1 23467788999999999999999988874 57999999999999999999999
Q ss_pred HHHHHhc
Q 004761 673 ILLQLCL 679 (732)
Q Consensus 673 ~L~~L~~ 679 (732)
+|..+|.
T Consensus 181 iL~~lc~ 187 (187)
T PF06371_consen 181 ILAALCL 187 (187)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 9999983
No 212
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=13 Score=43.77 Aligned_cols=207 Identities=17% Similarity=0.181 Sum_probs=132.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
..|.++|.+.....+..|.+.|-.+..++... ...+|..|+...+.|.+++.-.---|..-+..+.+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 56889999998888999998665554333221 246788888888999988876655555455433331111
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-hHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-NKARI 606 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n~~~l 606 (732)
-+..+-+-|++.++.+|..|+.+|..+-. .+...-++-++-+...+..+-+++.|+.||-.|=.-+. .+.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 25566677899999999999998876532 22221223333445566788999999999988855443 33333
Q ss_pred HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 607 v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
+ ..+-.+| +.++.++-.|+.+...+|-. |-.++. +-...+..++...++-.+-..+..|..-|+
T Consensus 182 ~-----e~I~~LLaD~splVvgsAv~AF~evCPe---rldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 182 E-----EVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred H-----HHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 3 3444445 67777777788877777642 333332 335666666665566666666666666655
No 213
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.91 E-value=2.3 Score=44.01 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHh-CChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc
Q 004761 626 VDKAVALLANLS-TVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS 703 (732)
Q Consensus 626 ~e~al~iL~nLa-~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~ 703 (732)
...|+.+|.-+| -+|..|..+.+..++..++.++. ...+..+-.++.+|..+...++.+.+.+-+.+++..++.++.+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 445667777654 47888888889999999999994 4678889999999999999999999999999999999999998
Q ss_pred CC--hHHHHHHHHHHHHh
Q 004761 704 GT--PRAKEKAQQLLSHF 719 (732)
Q Consensus 704 g~--~~~k~kA~~lL~~l 719 (732)
.. ..+|-|..+.|-..
T Consensus 188 ~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFY 205 (257)
T ss_pred ccccHHHhHHHHHHHHHH
Confidence 64 67888888866443
No 214
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=90.55 E-value=0.3 Score=36.95 Aligned_cols=41 Identities=12% Similarity=0.409 Sum_probs=31.8
Q ss_pred ccccCcc--cCCCceecCCC-----cccchHHHHHHHhcC-CCCCCCCC
Q 004761 241 RCPLSLE--LMIDPVIVASG-----QTYERVFIQKWLDHG-LNICPKTR 281 (732)
Q Consensus 241 ~Cpi~~~--lm~dPV~~~~g-----~ty~r~~I~~~~~~~-~~~cP~~~ 281 (732)
.|-||++ --.+|.+.||. +-+=+.|+.+|+... ..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3777875 45778888875 668899999999754 56899985
No 215
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.52 E-value=0.23 Score=37.14 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=22.2
Q ss_pred cccCcccC--CCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 242 CPLSLELM--IDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 242 Cpi~~~lm--~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
||+|.+.| +|--.. +||..+||.|..+-...++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888 222233 48999999998888876668999999875
No 216
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.48 E-value=13 Score=40.33 Aligned_cols=196 Identities=12% Similarity=0.064 Sum_probs=140.1
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-ch-----HHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHH
Q 004761 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-EN-----KAMIAEAGAIEPLIHVLKSG--NGGAKENSAAALFS 554 (732)
Q Consensus 483 i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~~-----k~~i~~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~ 554 (732)
+...|.+..|+..|..-+.+.+..++.+..++-... .+ ...+... -+-++..|-.| ++++...+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 344588889999999889999999999998886542 22 2233321 12233333222 46777888888988
Q ss_pred hccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhh---chHHHHHHhc-CCChHHHHHH
Q 004761 555 LSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-FHENKARIIQA---GAVKHLVDLM-DPSTGMVDKA 629 (732)
Q Consensus 555 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~~n~~~lv~~---G~V~~Ll~lL-~~~~~l~e~a 629 (732)
...++.....+.....+..+.+++..++=++..+|..++..|-. +.......+.. ..+.....+| +++--++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88888777777778888889999999999999999999998655 44444455543 4556666777 6666678899
Q ss_pred HHHHHHHhCChhhHHHHHH----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 630 VALLANLSTVGEGRLAIAR----EGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 630 l~iL~nLa~~~~~r~~i~~----~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
+.+|+.|...+.+-..+.. ..-+..++.+|++.+...+-.|..+.--+..+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999999888877665554 22478888899999999999999999888774
No 217
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.26 E-value=2.8 Score=43.34 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHc
Q 004761 461 IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLK 538 (732)
Q Consensus 461 ~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~ 538 (732)
....|+..|.-++--.+..|..+....++..|+.+|. ...+.++..++.+|..+-.+ +.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4556888888888888899999999999999999995 45788999999998776555 778888889999999999998
Q ss_pred CCC--HHHHHHHHHHHH
Q 004761 539 SGN--GGAKENSAAALF 553 (732)
Q Consensus 539 ~~~--~e~~~~Aa~~L~ 553 (732)
+.+ .+++...+-.|+
T Consensus 187 ~~~~~~~~r~K~~EFL~ 203 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLY 203 (257)
T ss_pred cccccHHHhHHHHHHHH
Confidence 764 566666655553
No 218
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.89 E-value=53 Score=39.81 Aligned_cols=216 Identities=19% Similarity=0.164 Sum_probs=123.7
Q ss_pred cccCchHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc----cCC----HHHHHHH
Q 004761 441 VTTTPYVKKLIEDLNS-----TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY----SEA----QLTQEHA 507 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s-----~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~----s~~----~~v~~~A 507 (732)
.++.+.+..++..+.+ ...+.....++.|+..++. ..||..+.+.|+++.|+..|. ... ..+.+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3456677888888764 2334455667777777766 689999999999999998885 333 5666666
Q ss_pred HHHHHHhhcCCch---H--HHHHH--------cCCHHHHHHHHcCC----CHHHHHHHHHHHHHhccCchhHHH-HHhcc
Q 004761 508 VTALLNLSINDEN---K--AMIAE--------AGAIEPLIHVLKSG----NGGAKENSAAALFSLSVLEEYKAK-IGRSG 569 (732)
Q Consensus 508 ~~~L~nLs~~~~~---k--~~i~~--------~g~l~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~k~~-i~~~g 569 (732)
+.++.-|...... . ..... ...+..|+..+.+. ++.+....+.+|-+|+..+..+.. +++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 6666555322110 0 00011 12266666666554 467888889999888875543322 2211
Q ss_pred hHHHHHHhhcC--C-CHHHHHHHHHHHHHhccC-------chhHHHHHhhchHHHHHHhc-CC--------ChHH-----
Q 004761 570 AVKALVDLLGS--G-TLRGRKDAATALFNLSIF-------HENKARIIQAGAVKHLVDLM-DP--------STGM----- 625 (732)
Q Consensus 570 ~i~~Lv~lL~~--~-~~~~~~~Al~aL~nLs~~-------~~n~~~lv~~G~V~~Ll~lL-~~--------~~~l----- 625 (732)
+.+.+++=+- . .+.. ...+.++..++.. ..-|..+++.|++...+++| .. ++..
T Consensus 271 -F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred -HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 1222222111 1 1111 1223444444331 12456889999999999988 21 1222
Q ss_pred ---HHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc
Q 004761 626 ---VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661 (732)
Q Consensus 626 ---~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~ 661 (732)
...++.+|.-||......+.++..++| .++..|..
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEq 386 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQ 386 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhc
Confidence 345778888888866655555555666 44555543
No 219
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.55 E-value=7.9 Score=44.65 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=97.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh---cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 451 IEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN---CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 451 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~---~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
+..+..-.++.+..|+..||.+.++..-+-..+-. ..++..++..+. .++..+-.++++|.|+-.++.++..++..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 33444556777888999999999876544333331 234555555555 56788899999999998887777777643
Q ss_pred --CCHHHHHHHHcCCCHHHHHHHHHHHHHhcc--CchhHHHHHhcchHHHHHHhhcC-----CCHHHHHHHHHHHHHhcc
Q 004761 528 --GAIEPLIHVLKSGNGGAKENSAAALFSLSV--LEEYKAKIGRSGAVKALVDLLGS-----GTLRGRKDAATALFNLSI 598 (732)
Q Consensus 528 --g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~Al~aL~nLs~ 598 (732)
..+.++.+.=...+..++...+....|++. ...+-. .+..+.|...+.. .+-++....+.||.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 222222222111223444444444444442 222211 2333444333322 133567778889999999
Q ss_pred CchhHHHHHhhchHHHHHHhc
Q 004761 599 FHENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL 619 (732)
.+.+..++.+.--|..++.-+
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHH
Confidence 888887777766666666655
No 220
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=0.5 Score=49.57 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=41.9
Q ss_pred CCCC--CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 234 VPIP--PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 234 ~~~p--~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
.+.| ++=.||||..=--..|..||||.-|..||.+|+-.. +.|=+|+.+..
T Consensus 415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~ 467 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVI 467 (489)
T ss_pred CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceee
Confidence 3455 688999999877788889999999999999999764 67888866543
No 221
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=89.37 E-value=39 Score=37.38 Aligned_cols=92 Identities=11% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCHHHHHHHHcCCC---HHHHHHHHHHHHHhccCch-hHHHHHhcchHHHHHHhhc-CC---CHHHHHHHHHHHHHhccC
Q 004761 528 GAIEPLIHVLKSGN---GGAKENSAAALFSLSVLEE-YKAKIGRSGAVKALVDLLG-SG---TLRGRKDAATALFNLSIF 599 (732)
Q Consensus 528 g~l~~Lv~lL~~~~---~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~-~~---~~~~~~~Al~aL~nLs~~ 599 (732)
..+..|..++++.. +.+-..|+.++..+..++. .-..+.+.|.++.+++.+. .+ +.++...--.+|..||.+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 34555666776653 5677788888888876554 4566677899999999887 43 456666666788889999
Q ss_pred chhHHHHHhhchHHHHHHhc
Q 004761 600 HENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL 619 (732)
......+.+.+.++.+++++
T Consensus 186 ~~Gl~~~~~~~~l~~~f~if 205 (379)
T PF06025_consen 186 NRGLEKVKSSNPLDKLFEIF 205 (379)
T ss_pred HHHHHHHHhcChHHHHHHHh
Confidence 99999999999999999998
No 222
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.33 E-value=0.23 Score=51.38 Aligned_cols=43 Identities=28% Similarity=0.564 Sum_probs=37.0
Q ss_pred ccccccCcccCCC---ceecCCCcccchHHHHHHHhcCC--CCCCCCC
Q 004761 239 YFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGL--NICPKTR 281 (732)
Q Consensus 239 ~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~--~~cP~~~ 281 (732)
-|.||+..+.-.| ||.++|||..-+.++.+--+.|. ..||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 5899999999876 99999999999999988877774 4599884
No 223
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.07 E-value=42 Score=38.40 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCC----HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 447 VKKLIEDLNSTS----NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 447 i~~Lv~~L~s~~----~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.-++|+.+.++. .......++....+.+.+++.+..+ .|.|-..|++.-..+.-.+.+++..++...-. .
T Consensus 225 ~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~ 298 (898)
T COG5240 225 QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG-S 298 (898)
T ss_pred HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-H
Confidence 345666665432 2223344556666666666555443 34555666666678888888888776642211 1
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL 558 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 558 (732)
.+.+ ..+..|-.+|++.....|-.|+.+|-.|+..
T Consensus 299 ~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 299 QFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 1221 2355666677788888999999999988753
No 224
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=58 Score=38.73 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=97.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHH
Q 004761 453 DLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEP 532 (732)
Q Consensus 453 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~ 532 (732)
.....++.++..|+-+|-.|-.-.++.+..+. ..+-.+|...++.+.-.|+.+.-.+|- + +..+. .+....
T Consensus 151 ~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCP--e-rldLI-Hknyrk 221 (968)
T KOG1060|consen 151 AVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCP--E-RLDLI-HKNYRK 221 (968)
T ss_pred HhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhch--h-HHHHh-hHHHHH
Confidence 33456788999999999888877776665444 345566777888888888888876662 2 22222 234666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCc---hh---------------HHHH-------Hhc----chHHHHHHhhcCCCH
Q 004761 533 LIHVLKSGNGGAKENSAAALFSLSVLE---EY---------------KAKI-------GRS----GAVKALVDLLGSGTL 583 (732)
Q Consensus 533 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~~---------------k~~i-------~~~----g~i~~Lv~lL~~~~~ 583 (732)
|+.+|.+-+.=-+..+..+|..-+.+. .+ +... ... -.+...-.+|.+.++
T Consensus 222 lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~ 301 (968)
T KOG1060|consen 222 LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP 301 (968)
T ss_pred HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc
Confidence 666665543333333444443222110 00 0000 000 012222335567788
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHh
Q 004761 584 RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLS 637 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa 637 (732)
.+..+++.+.++|+...++. .++.+|+.+|.++..++.-.+..++.++
T Consensus 302 sVVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs~~~vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 302 SVVMAVAQLFYHLAPKNQVT------KIAKALVRLLRSNREVQYVVLQNIATIS 349 (968)
T ss_pred HHHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 99999999999998765332 3567788887333344444444444443
No 225
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=11 Score=44.70 Aligned_cols=211 Identities=13% Similarity=0.087 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHH-h
Q 004761 499 EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVD-L 577 (732)
Q Consensus 499 ~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-l 577 (732)
+-+.++..|++.|..+.........+...+.+...+..|++.++-+-.+|...+..|+.. .....+|-|.+ +
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y 811 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY 811 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence 345567788888888876555556666788899999999998888888888877776642 23345677766 3
Q ss_pred hcCCC---HHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH--HHHHHcCc
Q 004761 578 LGSGT---LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR--LAIAREGG 651 (732)
Q Consensus 578 L~~~~---~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r--~~i~~~~~ 651 (732)
....+ ++.+.....|+.++..-.+.-..-..+-.+...+..+ +++...+.-+++.|++||.-..++ ..+. ..
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev 889 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EV 889 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HH
Confidence 33221 2233333455555543211111111123334444444 556666778899999998744332 1222 23
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHhHHHHHhC---CCHHHHHHchhcCC-hHHHHHHHHHHHH
Q 004761 652 IPSLVEVVES-GSQRGKENAASILLQLCLHSPKFCTLVLQE---GAVPPLVGLSQSGT-PRAKEKAQQLLSH 718 (732)
Q Consensus 652 I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~---G~i~~L~~Ll~~g~-~~~k~kA~~lL~~ 718 (732)
+..++.+... ++.-+|..|+.++..+-.+.+...-.+.++ .....+.......+ +.+|-.|..+|..
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4555555543 688899999999988877655433333332 34445555555544 4455555544433
No 226
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=88.57 E-value=0.44 Score=47.35 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=44.8
Q ss_pred ccccccCcccCCCcee-cCCCcccchHHHHHHHhcC-CCCCCC--CCCCCCCCCCcccHHH
Q 004761 239 YFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHG-LNICPK--TRQTLAHTNLIPNYTV 295 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~-~~~cP~--~~~~l~~~~l~pn~~l 295 (732)
+.+|||++....-|++ ..|.|.|||..|.+.++.- ...||. |.|.+..+.++-.+-|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 5689999999999987 4699999999999999843 356884 6677766666655544
No 227
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.57 E-value=2.8 Score=40.19 Aligned_cols=142 Identities=17% Similarity=0.149 Sum_probs=92.6
Q ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHH
Q 004761 530 IEPLIHVLKS--GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARI 606 (732)
Q Consensus 530 l~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~l 606 (732)
++.++..|.. .++++|..++-++..+- +..+....+ -+-+.+-.++..++......++.++..|-... +....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455555543 56788888888887773 333333322 23334444455544446777778887776644 344444
Q ss_pred -HhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-CCHH-HHHHHHHHHH
Q 004761 607 -IQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-GSQR-GKENAASILL 675 (732)
Q Consensus 607 -v~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~-~~e~A~~~L~ 675 (732)
...|..+.++.++ ..+..+...++.+|..-|.....|..|.+ .+++.|-++++. .++. .+..|+-+|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 4689999999988 35667778888888888888888887776 478899888854 4444 5766666654
No 228
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.56 E-value=18 Score=39.97 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-c---CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-S---EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPL 533 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s---~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~L 533 (732)
.+.+--.|+..+..+....|..-..+.++|.++.++..+. . .+.++....-.+|..||.+....+.+.+.+.++.+
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKL 201 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHH
Confidence 3566778888999999888889999999999999999887 3 35677777778888899999999999999999999
Q ss_pred HHHHcCCCH-------HHHHHHHHHHHHhccC-chhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHH----------
Q 004761 534 IHVLKSGNG-------GAKENSAAALFSLSVL-EEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATAL---------- 593 (732)
Q Consensus 534 v~lL~~~~~-------e~~~~Aa~~L~~Ls~~-~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL---------- 593 (732)
+.++.+... +.....-..+-.|..+ +.-|..+... ..+..++.+-+......-..+-...
T Consensus 202 f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (379)
T PF06025_consen 202 FEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGKDKAPECGWGAKLWTEDSQGKPVVS 281 (379)
T ss_pred HHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccCCCCCCC
Confidence 999876531 2222233334445543 3345554433 3444444443332211100000000
Q ss_pred ---HHhccCchhHHHHHhhc-hHHHH-H----------Hhc-C--------CChHHHHHHHHHHHHHhCChhhHHHHHHc
Q 004761 594 ---FNLSIFHENKARIIQAG-AVKHL-V----------DLM-D--------PSTGMVDKAVALLANLSTVGEGRLAIARE 649 (732)
Q Consensus 594 ---~nLs~~~~n~~~lv~~G-~V~~L-l----------~lL-~--------~~~~l~e~al~iL~nLa~~~~~r~~i~~~ 649 (732)
.+.....+. ..-...+ ..... . .-. . .-.......+..|..+-.+.+.+..+++.
T Consensus 282 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~YI~~v~rFLea~fsN~~~C~~FVe~ 360 (379)
T PF06025_consen 282 GESSAVSTDEEM-EEDVEEDDDMESVDTSSQDSTEPDSESSEDEDPDSPELPLTDYIFNVVRFLEAFFSNSDHCREFVEK 360 (379)
T ss_pred CCcccccccccc-ccccccccccccccccccCCCCCccccccccccCcccCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 000000000 0000000 00000 0 000 0 01235788888888888899999999999
Q ss_pred CcHHHHHHHHhcCC
Q 004761 650 GGIPSLVEVVESGS 663 (732)
Q Consensus 650 ~~I~~Lv~lL~~~s 663 (732)
||+..|++++..++
T Consensus 361 GGie~LLdLl~LPs 374 (379)
T PF06025_consen 361 GGIELLLDLLTLPS 374 (379)
T ss_pred CCHHHHHHHHcCCC
Confidence 99999999987543
No 229
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=0.12 Score=52.26 Aligned_cols=55 Identities=15% Similarity=0.331 Sum_probs=44.0
Q ss_pred CccccccCcccCCCce----------ecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLELMIDPV----------IVASGQTYERVFIQKWLDHG-LNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV----------~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~pn 292 (732)
++=.|.+|++=+-+-| .++|+|.|--.||.-|.--| ..|||.|+++.+.+.+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4567999988776666 68999999999999998766 4689999988766555554
No 230
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.13 E-value=0.12 Score=60.74 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=40.7
Q ss_pred cccccCcccCCCceecCCCcccchHHHHHHHhcCC-CCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGL-NICPKTRQTLAHTN 288 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~-~~cP~~~~~l~~~~ 288 (732)
+.|+||.+ -.+||++.|||.+|+.|+.+.+.... ..||.|+..+.++.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 88999999999999999999887433 46999988776543
No 231
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=0.31 Score=52.39 Aligned_cols=49 Identities=18% Similarity=0.374 Sum_probs=40.5
Q ss_pred CCccccccCcccCCCce-------ec-CCCcccchHHHHHHHhcC------CCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPV-------IV-ASGQTYERVFIQKWLDHG------LNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV-------~~-~~g~ty~r~~I~~~~~~~------~~~cP~~~~~l~ 285 (732)
-.++.|-||++.-.+++ |+ .|.|+||-.||.+|-... ...||.||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 36899999999999998 34 599999999999998532 367999997653
No 232
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.92 E-value=14 Score=44.68 Aligned_cols=253 Identities=18% Similarity=0.186 Sum_probs=143.5
Q ss_pred HHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCC----
Q 004761 466 AAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGN---- 541 (732)
Q Consensus 466 l~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~---- 541 (732)
-.+|..+.|.+.+|...+.++.++..++.++-++ +-+...++++..|-..+..+ +....+-.++..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 4578888899999999999999999888888432 22333334443333221110 01123445666676641
Q ss_pred --------HHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcC----------CCHHHHHHHHHHHHH---h--c
Q 004761 542 --------GGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGS----------GTLRGRKDAATALFN---L--S 597 (732)
Q Consensus 542 --------~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~----------~~~~~~~~Al~aL~n---L--s 597 (732)
..+....+++++..-. +...+..+++.++...|...|.. ++.-.-..-...|+. + |
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 2244556667776654 33456667788777766665531 122222222333332 2 3
Q ss_pred cCchhHHHHHh-------------hc---------hHHHHHHhc---CCChHHHH--HHHHHHHHH------hCChh---
Q 004761 598 IFHENKARIIQ-------------AG---------AVKHLVDLM---DPSTGMVD--KAVALLANL------STVGE--- 641 (732)
Q Consensus 598 ~~~~n~~~lv~-------------~G---------~V~~Ll~lL---~~~~~l~e--~al~iL~nL------a~~~~--- 641 (732)
.++.|+..+-. .| +|..|.++- -..+.+.. .|++.+-.+ ...|.
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 45556543322 22 222222221 00111111 122211111 11222
Q ss_pred --hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchh---cCChHHHHHHHHHH
Q 004761 642 --GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQ---SGTPRAKEKAQQLL 716 (732)
Q Consensus 642 --~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~---~g~~~~k~kA~~lL 716 (732)
.++.|..+|++..|+..+-...++.+-.-...|-.+.+.++.+.......|.++.|++++- +|+.-.--.|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 2567788899999999887778999988899999999988888888888899998888764 45544444555555
Q ss_pred HHhhccc
Q 004761 717 SHFRNQR 723 (732)
Q Consensus 717 ~~l~~~~ 723 (732)
.+|..+|
T Consensus 978 emLgayr 984 (2799)
T KOG1788|consen 978 EMLGAYR 984 (2799)
T ss_pred HHHhhcc
Confidence 5555444
No 233
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.89 E-value=26 Score=41.86 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=109.2
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
..+.......+..+..+.+.++-.|+..|+.+.+.. .....+...+.+...+..|++.|+-+--+|+..+..||.-
T Consensus 723 s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--- 798 (982)
T KOG4653|consen 723 SVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--- 798 (982)
T ss_pred cccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---
Confidence 344444667777888888889999999999999643 3445566678999999999999999988999877777632
Q ss_pred HHHHHHcCCHHHHHH-HHcCCC---HHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 521 KAMIAEAGAIEPLIH-VLKSGN---GGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~-lL~~~~---~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
.....++.+.+ ..+..+ .+.+...--++.++.. ..+-..... .-.+...+..+++.+..-+..++.++.+
T Consensus 799 ----y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 799 ----YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred ----cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 12234555554 232211 2222222222222221 000000000 0234555556665556667788888888
Q ss_pred hccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhC
Q 004761 596 LSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~ 638 (732)
||.-...+..=.=..++..++.+. +.+.-++..|+.++..+-.
T Consensus 874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 876332111001122444455555 4555566777777776654
No 234
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=0.15 Score=38.60 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=36.4
Q ss_pred ccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.|-||.+---|-|+--|||- .|-.|=.+-+..++..||.||.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 59999988888888899996 788887776666778999999875
No 235
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.71 E-value=0.17 Score=41.42 Aligned_cols=47 Identities=17% Similarity=0.540 Sum_probs=23.1
Q ss_pred ccccccCcccCC-C---ceec----CCCcccchHHHHHHHhc---CC-------CCCCCCCCCCC
Q 004761 239 YFRCPLSLELMI-D---PVIV----ASGQTYERVFIQKWLDH---GL-------NICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~-d---PV~~----~~g~ty~r~~I~~~~~~---~~-------~~cP~~~~~l~ 285 (732)
+..|+||..... + |+++ .||++|=..|+.+||.. ++ .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 2 5554 48999999999999963 11 25999998764
No 236
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.67 E-value=1.2 Score=40.43 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=57.2
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 651 GIPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 651 ~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
.+..|+++|. +.++.+..-||.=|..+++.-|..+..+-+.|+-..++.|+.+.++.+|..|..+++-+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4788999984 34667777788889999998898888888899999999999999999999999888765
No 237
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.37 Score=49.58 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=37.2
Q ss_pred ccccCcc-cCCCcee----cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 241 RCPLSLE-LMIDPVI----VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 241 ~Cpi~~~-lm~dPV~----~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
-||+|.. .+..|-+ =+|||+.|-+|.-+-|..|...||.|+..|-...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 3788763 4444432 2799999999999999999899999999885533
No 238
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.54 E-value=12 Score=39.96 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=106.3
Q ss_pred chHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc--CCchH
Q 004761 445 PYVKKLI-EDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI--NDENK 521 (732)
Q Consensus 445 ~~i~~Lv-~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~--~~~~k 521 (732)
+.+..|| ..+.+.++.++..|+++|...+--+.+. +. ..++.+...+..++..++..|+.++..+.. +....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4455555 6778899999999999999988655421 21 346777788877899999999999988743 11111
Q ss_pred H-------HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHh-hcCC--CHHHHHHHHH
Q 004761 522 A-------MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDL-LGSG--TLRGRKDAAT 591 (732)
Q Consensus 522 ~-------~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L~~~--~~~~~~~Al~ 591 (732)
. .......++.+...|.+.+++++..|+-.++.|...+.... ...++..|+-+ .... +..-.+.++.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 12234567778888988899999999999998865432222 12334444333 2221 2223444444
Q ss_pred H-HHHhccCchhHHHHHhhchHHHHHHhc
Q 004761 592 A-LFNLSIFHENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 592 a-L~nLs~~~~n~~~lv~~G~V~~Ll~lL 619 (732)
. +-..+..+......+..+.++.+..+.
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4 335565555445666667777777766
No 239
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=0.31 Score=53.38 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=28.6
Q ss_pred ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 254 IVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 254 ~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
++||.|.|-|.|+++|.+.-.-.||+||++|+.
T Consensus 603 ~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 603 LTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 458999999999999999655689999999864
No 240
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=87.06 E-value=0.37 Score=36.95 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=33.4
Q ss_pred cccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
..|=.+...=...++++|||..++.|-. -+...-||+|+.++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~---~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFP---GERYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccC---hhhccCCCCCCCcccCCC
Confidence 3455566666778899999999999833 233456999999986543
No 241
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.74 E-value=5.5 Score=38.92 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=76.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc---------CCHHHHHHHHHHHHHh
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS---------EAQLTQEHAVTALLNL 514 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s---------~~~~v~~~A~~~L~nL 514 (732)
.....+++.|.+..... ..+..|+...+..+ ..-..+.+.||+..|+.+|.. .+...+..++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 44567888887765432 44555554444433 334556678999999998852 3567888899999888
Q ss_pred hcCCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 004761 515 SINDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556 (732)
Q Consensus 515 s~~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 556 (732)
..+..+...+. ..+++..|+..|.+.+..++..++-+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 77766666666 4789999999999999999999998887765
No 242
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=86.31 E-value=23 Score=43.77 Aligned_cols=95 Identities=19% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc---C-CchHHHHHHcCCHHHH
Q 004761 459 NEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI---N-DENKAMIAEAGAIEPL 533 (732)
Q Consensus 459 ~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~-~~~k~~i~~~g~l~~L 533 (732)
.+.+..|+..|..++.... +++ -.-.+|.++.++..++.+++..|+.+|..+-. + +..-..+.-.-.+|.|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 4678899999999986432 222 12578999999999999999999998877632 1 1222223333467777
Q ss_pred HHHHcCCC-HHHHHHHHHHHHHhcc
Q 004761 534 IHVLKSGN-GGAKENSAAALFSLSV 557 (732)
Q Consensus 534 v~lL~~~~-~e~~~~Aa~~L~~Ls~ 557 (732)
-.++.+.+ ..+|..-|..|..|+.
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHH
Confidence 78887633 4456555666655553
No 243
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.28 E-value=1.2 Score=29.90 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=25.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 570 AVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 570 ~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
.+|.+++++.+.+++++..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998864
No 244
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.71 E-value=32 Score=39.74 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIA 525 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~ 525 (732)
...++...+ ++..+++-|...|....++-|+... .+|..++.+...+|..++..|+..|-.+|.+ ++....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 455666655 4688889999999999998887544 4677899999999999999999999999986 3444443
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc---CCCHHHHHHHHHHHH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG---SGTLRGRKDAATALF 594 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---~~~~~~~~~Al~aL~ 594 (732)
...|+++|.+.++.-...+-.+|..|...+ . .+.+..+..-+. .++..+++.++..|.
T Consensus 98 ----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-P------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ----HHHHHHHTT---HHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-c------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 567889998877544433333443332211 1 134444554443 466777887777664
No 245
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=85.30 E-value=12 Score=39.14 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=104.9
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcC--CHHHHHHHHcC----CCHHHHHHHHHHHHHhccCchhHHH
Q 004761 491 PLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAG--AIEPLIHVLKS----GNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 491 ~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g--~l~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
.+...+.+...+-+--++-+++-+..++..-..+...+ ....+..++.. ..+..+..+++++.|+-.+...+..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 34444444333334445555555555554444444332 23444444433 3567888999999999988888888
Q ss_pred HHhc-c-hHHHHHHhhcCC----CHHHHHHHHHHHHHhccCch-hH-HHHHhhchHHHHHHhc---CCChHHHHHHHHHH
Q 004761 565 IGRS-G-AVKALVDLLGSG----TLRGRKDAATALFNLSIFHE-NK-ARIIQAGAVKHLVDLM---DPSTGMVDKAVALL 633 (732)
Q Consensus 565 i~~~-g-~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~-n~-~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL 633 (732)
+... + .+-..+..+... +..++..++..++|++..-- ++ ..-....++..+++.+ ..+.+..-.++-+|
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAl 226 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVAL 226 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 7765 4 344444444443 57788889999999987421 11 1112223556666644 35788899999999
Q ss_pred HHHhCChhhHHHHHHcCcHHHHHHHH--hcCCHHHHHHH
Q 004761 634 ANLSTVGEGRLAIAREGGIPSLVEVV--ESGSQRGKENA 670 (732)
Q Consensus 634 ~nLa~~~~~r~~i~~~~~I~~Lv~lL--~~~s~~~~e~A 670 (732)
++|+..+.........-++...+... ....++.++.+
T Consensus 227 GtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 227 GTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 99997776665555533344333332 23455555544
No 246
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=85.20 E-value=6.9 Score=38.24 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchH-HHHHHhh
Q 004761 500 AQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAV-KALVDLL 578 (732)
Q Consensus 500 ~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i-~~Lv~lL 578 (732)
|+.++.+++.+++-|+..-.+ +++ ..++.+...|+++++.+|..|+.+|..|...+- +-..|-+ ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHH
Confidence 567889999999988754222 222 358889999999999999999999999976432 2222333 7777888
Q ss_pred cCCCHHHHHHHHHHHHHhccC
Q 004761 579 GSGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 579 ~~~~~~~~~~Al~aL~nLs~~ 599 (732)
.+.++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999988765
No 247
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=32 Score=40.51 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=77.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc-----C------CCHHHHHHHHHHHHHhccCchh
Q 004761 534 IHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG-----S------GTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 534 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-----~------~~~~~~~~Al~aL~nLs~~~~n 602 (732)
+.+|..++-+++..+..+...|.... -+.-++.+|+ + .+..-+..-+++|...+..-+.
T Consensus 323 LrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 323 LRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 34455556666666666655554432 2333444443 1 1223355566677776653211
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH-hCChhhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL-STVGEGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCL 679 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL-a~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~ 679 (732)
+.+.+|+.|++++ +.+....-..+..+... -..|.-|..+ +..+++-+.. .+.+.-+.|+|++..-|.
T Consensus 393 ----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 393 ----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred ----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 4467899999999 55554433334333322 2233334433 3344443321 356778889999999998
Q ss_pred CChHhHH--HHHh--CCCHHHHH
Q 004761 680 HSPKFCT--LVLQ--EGAVPPLV 698 (732)
Q Consensus 680 ~~~~~~~--~v~~--~G~i~~L~ 698 (732)
...+... ..++ .|-+|.+.
T Consensus 464 ~~~~i~~~~k~i~~slGEvp~~~ 486 (948)
T KOG1058|consen 464 GLSEIQSVIKIIRQSLGEVPIVC 486 (948)
T ss_pred hhHHHHHHHHHHHHhccccceeh
Confidence 6543222 3333 46666543
No 248
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=84.68 E-value=0.57 Score=48.91 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=35.9
Q ss_pred CccccccCcccCC--Cceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMI--DPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 238 ~~f~Cpi~~~lm~--dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
+++ ||+|.+.|. |-=.. +||...||-|....-+.=+..||.||..+++..
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 455 999999885 33333 589998998865544433568999999988754
No 249
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.37 E-value=0.24 Score=56.95 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=36.9
Q ss_pred ccccccCcccCCCceec---CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIV---ASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~---~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.-.||+|..-+.|-.+. .|||.||.+||..|-.-. .+||.|+..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence 34688888888888763 589999999999998754 689999877654
No 250
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.03 E-value=0.54 Score=53.12 Aligned_cols=59 Identities=22% Similarity=0.424 Sum_probs=41.1
Q ss_pred ccccccCcccC----CCceecCCCcccchHHHHHHHhcCCCCCCCCC--CC--CCCCCCcccHHHHHHHH
Q 004761 239 YFRCPLSLELM----IDPVIVASGQTYERVFIQKWLDHGLNICPKTR--QT--LAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 239 ~f~Cpi~~~lm----~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~--~~--l~~~~l~pn~~l~~~i~ 300 (732)
-++|+||..+| ..||.+-||||.||.|.+.-.+. +||.-+ -. ...++..-|++|-+.+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhhc
Confidence 46799997766 47999999999999999987754 577211 11 12245666777766654
No 251
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=83.77 E-value=0.77 Score=37.79 Aligned_cols=43 Identities=33% Similarity=0.615 Sum_probs=31.3
Q ss_pred ccccCcccCC----Cceec-CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 241 RCPLSLELMI----DPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 241 ~Cpi~~~lm~----dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.||=|.-=|. =||+- -|.|.|--.||.+|++.. ..||.++|+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCcee
Confidence 3555554341 13443 589999999999999974 7899999875
No 252
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.73 E-value=16 Score=46.15 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=115.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhh-c-CCchHHHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLS-I-NDENKAMI 524 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs-~-~~~~k~~i 524 (732)
..|...+.+++++.+..++--|-.+.++-...+..... .........+|...|.-+|+.|.+-|.-.- . +...++.+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence 34556667889998877665554444332222222221 233467788888888888888887765331 1 23334444
Q ss_pred HHcCCHHHHHHHHcCCC-------HHHHHHHHH---------------HHHHhccCchhHHHHHhcchHHHHHHhhcCC-
Q 004761 525 AEAGAIEPLIHVLKSGN-------GGAKENSAA---------------ALFSLSVLEEYKAKIGRSGAVKALVDLLGSG- 581 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~-------~e~~~~Aa~---------------~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~- 581 (732)
+ +.|+.-|..|. .++....-+ =|++|+. .++....|-..+++-++.
T Consensus 901 V-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 901 V-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANHNA 969 (1702)
T ss_pred H-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhhhc
Confidence 3 33444333221 111111111 2223322 222334555556665543
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHHH
Q 004761 582 TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEVV 659 (732)
Q Consensus 582 ~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~lL 659 (732)
....++-|+.-+..|+.....+.+=.-.-.||.|.++= +++..++.....+-..|...+... .... ...+.-|+.-+
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l 1048 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNL 1048 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc
Confidence 23445555555555544332222112234677777776 788877665555555555543221 1111 12344444445
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCh
Q 004761 660 ESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 660 ~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
-+..=++||.+|.+|..|..+.+
T Consensus 1049 t~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCC
Confidence 44556799999999999998643
No 253
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=83.64 E-value=1.1e+02 Score=37.71 Aligned_cols=241 Identities=18% Similarity=0.165 Sum_probs=128.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
+..+..|++.|++.+..++-.|++.+..++...+ ..+++ ..|...+.++.- ++...--.|+.+|..|+.-.--..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 4566778888888888888999999999998877 22332 345556665543 234555578888888875321111
Q ss_pred HHHHcCCHHHHHHHHcC----C----CHHHHHHHHHHHHHhccCchhHH--HHHhcchHH-HHHHhhcCCCHHHHHHHHH
Q 004761 523 MIAEAGAIEPLIHVLKS----G----NGGAKENSAAALFSLSVLEEYKA--KIGRSGAVK-ALVDLLGSGTLRGRKDAAT 591 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~----~----~~e~~~~Aa~~L~~Ls~~~~~k~--~i~~~g~i~-~Lv~lL~~~~~~~~~~Al~ 591 (732)
... ...++.++.-|.- | ...+|..|+.++|.++...+... .+.. .... .|...+-+.....+++|..
T Consensus 416 s~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 110 1234444444431 1 24588888888888876332221 1111 1112 2223344566778888888
Q ss_pred HHHHhccCchhHHHHHhhchHHHHHHhc---C-CChHHHHHHHHHHH-HHhCChhhHHHHHHcCcHHHHHHHHhcCCHHH
Q 004761 592 ALFNLSIFHENKARIIQAGAVKHLVDLM---D-PSTGMVDKAVALLA-NLSTVGEGRLAIAREGGIPSLVEVVESGSQRG 666 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~-~~~~l~e~al~iL~-nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~ 666 (732)
|+.....-..|. |.=++++ + -.-..+.++-..|. .++..+..+..+.++ .+.+.+.+-+...
T Consensus 494 AlqE~VGR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~----L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH----LLTKKVCHWDVKI 560 (1133)
T ss_pred HHHHHhccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH----HHhcccccccHHH
Confidence 887654433332 1111111 0 00111122222221 123333333332221 1112245568889
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChH
Q 004761 667 KENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPR 707 (732)
Q Consensus 667 ~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~ 707 (732)
++.|+++|..|....|+ ....+.+++|+.-..+++..
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChH
Confidence 99999999998775544 34456677777766666644
No 254
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.45 E-value=32 Score=38.51 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=111.2
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-ccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 446 YVKKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL-YSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 446 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
.+..++.... ..++..+..++..+..+.-.-+..- . . ...+..+...+ ...+...+..++.++..+. |..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~-l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----KaL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-D-L-DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KAL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-h-H-HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HHH
Confidence 5667777654 4456777888888888874421110 0 0 12233333333 2334445555555554443 122
Q ss_pred HHH-----cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-ch--------hHHHHHhc----chHHHHHHhhcCCCHHH
Q 004761 524 IAE-----AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EE--------YKAKIGRS----GAVKALVDLLGSGTLRG 585 (732)
Q Consensus 524 i~~-----~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~--------~k~~i~~~----g~i~~Lv~lL~~~~~~~ 585 (732)
+++ ...+..|+.+|.+ +++...|+..+.-|..+ ++ +-..+.+. ..+|.|++-.+..+...
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI 339 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence 221 1246667777766 55667777777776554 22 11222221 46788888888777778
Q ss_pred HHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh
Q 004761 586 RKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG 640 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~ 640 (732)
+..-+.||.++..+-+....+-+ ..++|.|++-| .++..+...++.+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88899999999886553332223 45788888888 567778889999999887755
No 255
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.05 E-value=0.53 Score=55.41 Aligned_cols=46 Identities=17% Similarity=0.460 Sum_probs=34.7
Q ss_pred cccccCcccCC--C---ceec--CCCcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMI--D---PVIV--ASGQTYERVFIQKWLDH-GLNICPKTRQTLA 285 (732)
Q Consensus 240 f~Cpi~~~lm~--d---PV~~--~~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~ 285 (732)
=.|+||..+.. | |--. .|.|.|--+|+-+||.. ++.+||.||..++
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 35999999865 3 3222 26788999999999985 5679999996553
No 256
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.82 E-value=58 Score=34.04 Aligned_cols=213 Identities=19% Similarity=0.094 Sum_probs=122.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
|=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++..|..|.......... ..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence 3456778888899999999887765543221 122336677777643 46666655566666555322211111 01
Q ss_pred CCHHHHHHHHc--CCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCchh
Q 004761 528 GAIEPLIHVLK--SGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGS-GTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 528 g~l~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~n 602 (732)
..+..+.+-.+ .-....|.....+|..|... ....+.. .+.+..+++++.. .+|+....+...+..+...-+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 11222222111 11245677777777776543 3333332 2578888888875 4799888888888777553332
Q ss_pred HHHHHhhchHHHHHHhc--------CC---Ch-HH-H-HHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHH
Q 004761 603 KARIIQAGAVKHLVDLM--------DP---ST-GM-V-DKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKE 668 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL--------~~---~~-~l-~-e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e 668 (732)
...+.-+.+.+ .+ ++ ++ . +...++...|+.++.- ..-++|.|++.|.++++.+|.
T Consensus 158 ------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 158 ------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred ------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHH
Confidence 22333344433 11 11 12 2 2333444456655532 234799999999999999999
Q ss_pred HHHHHHHHHhc
Q 004761 669 NAASILLQLCL 679 (732)
Q Consensus 669 ~A~~~L~~L~~ 679 (732)
.++.+|...+.
T Consensus 227 D~L~tL~~c~~ 237 (262)
T PF14500_consen 227 DSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHH
Confidence 99999988665
No 257
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=0.53 Score=38.38 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=34.1
Q ss_pred CCccccccCcccCCC-ceec-CCCcccchHHHHHHHhcC--CCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMID-PVIV-ASGQTYERVFIQKWLDHG--LNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm~d-PV~~-~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~ 285 (732)
|-+=.||-|.-.=.| |.++ -|.|.|-+.||.+|+... ...||.|||...
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 444455555544333 5555 589999999999999742 357999999764
No 258
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.00 E-value=20 Score=36.08 Aligned_cols=146 Identities=14% Similarity=0.033 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhccCchh--HHHHHhcchHHHH
Q 004761 502 LTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSG-----NGGAKENSAAALFSLSVLEEY--KAKIGRSGAVKAL 574 (732)
Q Consensus 502 ~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~L 574 (732)
.-..+|+.+|.-++.+++.|..+.++..--.|...|... .+-.|..+++++..|..+++. ...+....++|.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 345778888888888899998888775433344555432 245788999999999876543 2334456899999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCchhHHHHH-------h-hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHH
Q 004761 575 VDLLGSGTLRGRKDAATALFNLSIFHENKARII-------Q-AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 575 v~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv-------~-~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
+.++..++.-.+..|+.++..+..++..-.-+. . ..++..++.-+ .....+...++.+--.|+..+..|.
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence 999999988888888888877766654322222 1 12223333333 3455677777777777888887776
Q ss_pred HHH
Q 004761 645 AIA 647 (732)
Q Consensus 645 ~i~ 647 (732)
.+.
T Consensus 275 lL~ 277 (315)
T COG5209 275 LLS 277 (315)
T ss_pred HHh
Confidence 654
No 259
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=81.93 E-value=55 Score=33.96 Aligned_cols=198 Identities=20% Similarity=0.186 Sum_probs=114.3
Q ss_pred ccCchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc
Q 004761 442 TTTPYVKKLIEDLNST--SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
.+...++.|+..|... .+-++.+|..+|..+. . .+..+.|-++.+.+-..+.+.+..++..+-.-+.
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 3456689999888744 4566678888887765 2 2345556666655556666666666665532110
Q ss_pred -----hHHHH--------HHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHH
Q 004761 520 -----NKAMI--------AEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRG 585 (732)
Q Consensus 520 -----~k~~i--------~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~ 585 (732)
+.... ...+-+..|-..|...+ +....+ .++|+|-. ++...+|..|++=+..++.-.
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LRn-------~g~EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLRN-------IGTEEAINALIDGLADDSALF 203 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhhc-------cCcHHHHHHHHHhcccchHHH
Confidence 00000 01122333333333222 111111 22222211 122246677777777777777
Q ss_pred HHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC
Q 004761 586 RKDAATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~ 662 (732)
+..++.++..| ...-+|+.|.+.| ..++-++-.|+.+|+.++. ...+..|.+++...
T Consensus 204 rhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 204 RHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCc
Confidence 77787777655 3334788888888 3455667778888877654 24577888888888
Q ss_pred CHHHHHHHHHHHHHHhc
Q 004761 663 SQRGKENAASILLQLCL 679 (732)
Q Consensus 663 s~~~~e~A~~~L~~L~~ 679 (732)
++-+++.|..+|--+-.
T Consensus 264 ~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888777755433
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=81.88 E-value=56 Score=39.37 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHH
Q 004761 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI 534 (732)
Q Consensus 456 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv 534 (732)
+..|....+|...+...++...-+...+. -++...++.+. +..+-++..|++++.--+.. ....-...+.++.|.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccchHHHHHHH
Confidence 34455555666666655543222221111 12222333333 23344566666666544411 000111356777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCchhHHHHHhhchH
Q 004761 535 HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG--SGTLRGRKDAATALFNLSIFHENKARIIQAGAV 612 (732)
Q Consensus 535 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V 612 (732)
++....+.++...-.-+|+..+..+.-...-..+-+.|..+.+.- +++|.+...+--++..|+....|...+. .-.+
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~i 615 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLI 615 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHH
Confidence 888777788877777888877776655555555567777776643 3567777777777777776444433333 3578
Q ss_pred HHHHHhc-CC----ChHHHHHHHHHHHHHhCChh--hHHHHHHcCcHHHHHHH-HhcCCHHHHHHHHHHHHHHhcCChHh
Q 004761 613 KHLVDLM-DP----STGMVDKAVALLANLSTVGE--GRLAIAREGGIPSLVEV-VESGSQRGKENAASILLQLCLHSPKF 684 (732)
Q Consensus 613 ~~Ll~lL-~~----~~~l~e~al~iL~nLa~~~~--~r~~i~~~~~I~~Lv~l-L~~~s~~~~e~A~~~L~~L~~~~~~~ 684 (732)
|.++..| .+ ...+...++.+|..+.+..+ --..+.. -+.|.+.+. +++++...-.++-.+|..+...+.+.
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 9999998 32 36778888889987766432 1222222 256777774 57778888888999998888866553
No 261
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.60 E-value=4.2 Score=41.35 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhccCch--hHHHHHhhchHHHHHHhc-C-------C--------ChHHHHHHHHHHHHHhCChhhHH
Q 004761 583 LRGRKDAATALFNLSIFHE--NKARIIQAGAVKHLVDLM-D-------P--------STGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 583 ~~~~~~Al~aL~nLs~~~~--n~~~lv~~G~V~~Ll~lL-~-------~--------~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
...+++|+..|.|++..=+ .-..-+..-++..|+... . + .-.-+..|+.+|+.|+-...+..
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 3567788888888876321 111222233344444443 1 1 12347889999999998877766
Q ss_pred HHHHcCc-------HHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHhHH-HHHhCCCHHHHHHchhcCChHHH
Q 004761 645 AIAREGG-------IPSLVEVV-ESGSQRGKENAASILLQLCLHSPKFCT-LVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 645 ~i~~~~~-------I~~Lv~lL-~~~s~~~~e~A~~~L~~L~~~~~~~~~-~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
-+..++- +..|++++ .++++..+|.|+.+|.+||..+...+. ...+.+.|..|+..+......+.
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNAH 233 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 6666553 33344444 346788999999999999998877664 44578999999999987654443
No 262
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=81.55 E-value=2.6 Score=28.26 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 489 IPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 489 I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
+|.+++++.+++++++..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998863
No 263
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=80.53 E-value=90 Score=33.76 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=109.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc-cChhhHHHHHh-cC-CHHHHHHhhccC-----C--------HHHHHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAK-HNMENRMIIGN-CG-AIPPLLSLLYSE-----A--------QLTQEHAVTA 510 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~-~~~~~r~~i~~-~G-~I~~Lv~lL~s~-----~--------~~v~~~A~~~ 510 (732)
+..+.+.|.+.....+..+++.|..+.. .+......+.. -+ -.+.|..++... + +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888888888888899999999998 66555444443 33 345666666321 1 2788888887
Q ss_pred HHHhhcC--CchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHH-hccC----chhHHHHHhcchHHHHHHhhcCCC
Q 004761 511 LLNLSIN--DENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFS-LSVL----EEYKAKIGRSGAVKALVDLLGSGT 582 (732)
Q Consensus 511 L~nLs~~--~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~----~~~k~~i~~~g~i~~Lv~lL~~~~ 582 (732)
+..+-.. ...+..+. ..+.+..+.+-|...+.++....+.+|.. +... ...|..+....++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 6665433 34566666 45678888888888888888888888875 3332 234566666678899999887665
Q ss_pred H----HHHHHHHHHHHHhccCchh
Q 004761 583 L----RGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 583 ~----~~~~~Al~aL~nLs~~~~n 602 (732)
+ .+...+-..|..+|.++.+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 5 7778888888888876543
No 264
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=46 Score=40.85 Aligned_cols=148 Identities=18% Similarity=0.119 Sum_probs=88.8
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHH
Q 004761 568 SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLA 645 (732)
Q Consensus 568 ~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~ 645 (732)
.+++.-|+..|++.+..++..|++-+..++..-+ .-....++...++++ .++...--.++-+|+.|+.-.--...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3678888888999999999999999999887554 223334666677766 22344445677778877653211111
Q ss_pred HHHcCcHHHHHHHHh--------cCCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHH
Q 004761 646 IAREGGIPSLVEVVE--------SGSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716 (732)
Q Consensus 646 i~~~~~I~~Lv~lL~--------~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 716 (732)
.. ...+|.+++-+. +....+++.|+.++|++.+. ++....-+++.=+-..|...+-+..-..|+.|.+++
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 11 124555555442 23456899999999999984 444333333221122233333333456788887766
Q ss_pred HHh
Q 004761 717 SHF 719 (732)
Q Consensus 717 ~~l 719 (732)
.-.
T Consensus 496 qE~ 498 (1133)
T KOG1943|consen 496 QEN 498 (1133)
T ss_pred HHH
Confidence 544
No 265
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.40 E-value=0.81 Score=48.78 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=42.5
Q ss_pred ccccccCcccCCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 239 ~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
.+.|.|++++|.| |++.+.|++|-..+|+.|=...+-.||.++..+...
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 4679999999987 999999999999999999876668899998877543
No 266
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.39 E-value=79 Score=37.40 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=74.4
Q ss_pred hcchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 567 RSGAVKALVDL-LGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 567 ~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
..++|..|+++ ..+.+..+++.|..+|.-++..+++ .++..+++| +-++.++-.++-+|.--|.....+
T Consensus 552 nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 552 NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred chhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 34677888887 5667888999999999877765443 345556667 457777777888888777765544
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCChHhHHHHHhCCCHHHHHHchhcCCh
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQL-CLHSPKFCTLVLQEGAVPPLVGLSQSGTP 706 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L-~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~ 706 (732)
.++ ..|-.++.....-++..|+-++.-+ +..++..+..+ .|....+.+++.+.++
T Consensus 624 eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 624 EAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred HHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhh
Confidence 433 3333344444455666666555333 33444433333 1334555556655543
No 267
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=80.34 E-value=35 Score=35.56 Aligned_cols=135 Identities=18% Similarity=0.111 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHhhch--HHHHHHhc-CC----ChHHHHHHHHHHHHHhCChh-hHH-HHHHcCc
Q 004761 581 GTLRGRKDAATALFNLSIFHENKARIIQAGA--VKHLVDLM-DP----STGMVDKAVALLANLSTVGE-GRL-AIAREGG 651 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~--V~~Ll~lL-~~----~~~l~e~al~iL~nLa~~~~-~r~-~i~~~~~ 651 (732)
..+..+..+++++.|+-.+...+..+.+... +-..+..+ .. +..++..+..++.|++..-- .+. .-.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4577888999999999999888888777432 33333333 32 56777778888889865211 010 0000112
Q ss_pred HHHHHHHHh-c-CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHH
Q 004761 652 IPSLVEVVE-S-GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQL 715 (732)
Q Consensus 652 I~~Lv~lL~-~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~l 715 (732)
+..+++.+. . .++++...++.+|.+|+..++.....+...|+...+......+ .+|.++.+.++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 444445332 2 5888999999999999986655555444466666666665444 57888887764
No 268
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.07 E-value=84 Score=38.57 Aligned_cols=221 Identities=18% Similarity=0.196 Sum_probs=123.6
Q ss_pred chHHHHHHHhcCCCH------------HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc----------CCHH
Q 004761 445 PYVKKLIEDLNSTSN------------EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS----------EAQL 502 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~------------~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s----------~~~~ 502 (732)
..+-.+|..|+++-. .....-+..++....-+...|..+.++|+...|...|.. +|.-
T Consensus 720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc 799 (2799)
T KOG1788|consen 720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC 799 (2799)
T ss_pred HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence 456678888876311 112223445566665566778889999999988887742 1222
Q ss_pred HHHHHHHHHHHh-----hcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHh
Q 004761 503 TQEHAVTALLNL-----SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDL 577 (732)
Q Consensus 503 v~~~A~~~L~nL-----s~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l 577 (732)
+...-..+|..+ +.+..|+..+-..=..+.+..+|.... |...+..+..|.. ..+.-.+.
T Consensus 800 vyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresg-------------llcvnler~viql--llElalev 864 (2799)
T KOG1788|consen 800 VYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESG-------------LLCVNLERHVIQL--LLELALEV 864 (2799)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhc-------------cceecchHHHHHH--HHHHHHHh
Confidence 222333333332 234445554433223333444443211 1111111111110 01111122
Q ss_pred hcCCCHHHHHHHHHHHHHhccC-----------chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHH
Q 004761 578 LGSGTLRGRKDAATALFNLSIF-----------HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRL 644 (732)
Q Consensus 578 L~~~~~~~~~~Al~aL~nLs~~-----------~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~ 644 (732)
+-......-..|+..++.+-.+ ...+.++..+|++..|++.+ ...+.++-.-+.+|..+++..+ +.+
T Consensus 865 lvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnae 944 (2799)
T KOG1788|consen 865 LVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAE 944 (2799)
T ss_pred hCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchh
Confidence 2222222233455555544221 23567899999999999998 7778888889999999988554 555
Q ss_pred HHHHcCcHHHHHHHH---hcCCHHHHHHHHHHHHHHhcC
Q 004761 645 AIAREGGIPSLVEVV---ESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL---~~~s~~~~e~A~~~L~~L~~~ 680 (732)
-....|.+..|++++ .+|+...--+|..++.-||..
T Consensus 945 lltS~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 945 LLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred hhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 555678899988876 356666677788888777764
No 269
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=79.92 E-value=11 Score=31.06 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHhHHHHHhCC
Q 004761 626 VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCLHSPKFCTLVLQEG 692 (732)
Q Consensus 626 ~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G 692 (732)
...|++++++++..+.|..-+.+.+.++.++++... +....|--|..+|.-+++ +.+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 467899999999999998888888999999999864 566778888888877776 667777666655
No 270
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.41 E-value=1.4e+02 Score=36.49 Aligned_cols=232 Identities=14% Similarity=0.101 Sum_probs=122.3
Q ss_pred CchHHHHHHHhc------CC--CHHHHHHHHHHHHHHhc----cChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHH
Q 004761 444 TPYVKKLIEDLN------ST--SNEIQASAAAELRLLAK----HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTAL 511 (732)
Q Consensus 444 ~~~i~~Lv~~L~------s~--~~~~~~~Al~~L~~La~----~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L 511 (732)
.+.++++++-|. .. ++.....|+..+..++. .++ .+. ..+.-.++.+...++++.--++-.|++++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-YKS-QMEYFLVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-hHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence 456677777776 22 34445678887777762 221 122 22233455566677788888999999999
Q ss_pred HHhh-cCCchHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCch-hHHHHHhc--chHHHHHHhhcCCCHHHH
Q 004761 512 LNLS-INDENKAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEE-YKAKIGRS--GAVKALVDLLGSGTLRGR 586 (732)
Q Consensus 512 ~nLs-~~~~~k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~--g~i~~Lv~lL~~~~~~~~ 586 (732)
..++ .+=.+...+. .++......|. +....++..||-+|..+..+.. +...+... +.++.|+.+.+.-+.+..
T Consensus 487 ~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~L 564 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDL 564 (1010)
T ss_pred HHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHH
Confidence 9998 3322222222 23566666666 5557789999999988866543 44555544 677788888776443333
Q ss_pred HHHHHHHHHhccCchhH-HHHHh--hchHHHHHHhc-C---CChHH---HHHHHHHHHHHhC---ChhhHHHHHH---cC
Q 004761 587 KDAATALFNLSIFHENK-ARIIQ--AGAVKHLVDLM-D---PSTGM---VDKAVALLANLST---VGEGRLAIAR---EG 650 (732)
Q Consensus 587 ~~Al~aL~nLs~~~~n~-~~lv~--~G~V~~Ll~lL-~---~~~~l---~e~al~iL~nLa~---~~~~r~~i~~---~~ 650 (732)
...+-.+- +.+++.- ...++ ...+...++++ . .+... .-.|.++|..+.+ .-+.+..+.. ..
T Consensus 565 t~vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~ 642 (1010)
T KOG1991|consen 565 TNVMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPI 642 (1010)
T ss_pred HHHHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33332221 1222111 11111 12333334444 1 12222 2233344433321 1122332322 22
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.++.+-.++.+.-.+.-+.++.++..++...
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 3566666666655566667777776666543
No 271
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=79.27 E-value=5.3 Score=44.28 Aligned_cols=176 Identities=15% Similarity=0.092 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhcCCchHH-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-----Cch---hHHHHHhcchHHH
Q 004761 503 TQEHAVTALLNLSINDENKA-MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-----LEE---YKAKIGRSGAVKA 573 (732)
Q Consensus 503 v~~~A~~~L~nLs~~~~~k~-~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-----~~~---~k~~i~~~g~i~~ 573 (732)
+...|++++.-+..++..+. ...-..+...++..|.+..-..++.+++++.+++. .+. ....+.. -.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence 34455555555555554433 22234456666677766666788888888888753 111 1111110 01222
Q ss_pred HHHhhc---CCCHHHHHHHHHHHHHhccCch----hHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHH
Q 004761 574 LVDLLG---SGTLRGRKDAATALFNLSIFHE----NKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 574 Lv~lL~---~~~~~~~~~Al~aL~nLs~~~~----n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
++..-. ..+.+++..|..+|.|++..-+ -....+..|.+..++.-. ...-.++.+++.++.||..++...-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 222211 2346788889999999876422 111222334444443333 4456788999999999998775421
Q ss_pred -HH-HHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Q 004761 645 -AI-AREGGIPSLVEVVES-GSQRGKENAASILLQLCL 679 (732)
Q Consensus 645 -~i-~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~ 679 (732)
.+ ......+.|..++.. .+.+++.+|+++|..-..
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 11 112246777777654 577788888888876554
No 272
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=78.92 E-value=23 Score=35.67 Aligned_cols=174 Identities=20% Similarity=0.098 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc---CCC--HHHHHHHHHHHHHhccCch--hHHHHHhhchHHHHH
Q 004761 544 AKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG---SGT--LRGRKDAATALFNLSIFHE--NKARIIQAGAVKHLV 616 (732)
Q Consensus 544 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---~~~--~~~~~~Al~aL~nLs~~~~--n~~~lv~~G~V~~Ll 616 (732)
-..+|+..|--++++++.|..+....+--.+..+|. ... .-.+..++..+..|..++. ....+....+||.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345777788888888888877766533222233332 221 3345678888888888654 455777889999999
Q ss_pred Hhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHc----CcH----HHHH-HHHhcCCHHHHHHHHHHHHHHhcCChHhHH
Q 004761 617 DLM-DPSTGMVDKAVALLANLSTVGEGRLAIARE----GGI----PSLV-EVVESGSQRGKENAASILLQLCLHSPKFCT 686 (732)
Q Consensus 617 ~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~----~~I----~~Lv-~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~ 686 (732)
+++ ..+.--+.-|..++..+.....|-+-+.++ -++ ..++ ++...++.+.-.+++.+-..||. +++.+.
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~aR~ 274 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHARA 274 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHhHHH
Confidence 999 444445566777888777777775544431 122 2222 34456888889999999999998 566555
Q ss_pred HHHh---CCCHHHHHHchhcCChHHHHHHHHHHHH
Q 004761 687 LVLQ---EGAVPPLVGLSQSGTPRAKEKAQQLLSH 718 (732)
Q Consensus 687 ~v~~---~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 718 (732)
.+.. +|....-..++-.++...|+.-+.++-.
T Consensus 275 lL~~~lP~~Lrd~tfs~vl~dD~~sk~ClAqll~~ 309 (315)
T COG5209 275 LLSSKLPDGLRDDTFSLVLADDGGSKECLAQLLTF 309 (315)
T ss_pred HHhccCCccccccHHHHHHHhcCChHHHHHHHHHH
Confidence 4432 3444433333333333334433334433
No 273
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=78.87 E-value=25 Score=42.11 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=117.8
Q ss_pred HHHHhhcC-CchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhcchHH--HHHHhhcCCC-HH
Q 004761 510 ALLNLSIN-DENKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRSGAVK--ALVDLLGSGT-LR 584 (732)
Q Consensus 510 ~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~--~Lv~lL~~~~-~~ 584 (732)
+|+++..+ +.+...+.+.|++..+...++.- ..+....+.+.+.+++...+++........+. .+-.++..-+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 67777665 56788899999999999999854 47788999999999988766655544332222 2222333333 35
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHH-HHHHHhc-C
Q 004761 585 GRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPS-LVEVVES-G 662 (732)
Q Consensus 585 ~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~-Lv~lL~~-~ 662 (732)
.-..|+..|..+..+.+. ....+.= ..+.+......... +.....+.-..-+.. +..++.. .
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r----------~~~~~~l~e~i~~~---~~~~~~~~~~~~f~~~~~~il~~s~ 637 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFR----------NSVNELLVEAISRW---LTSEIRVINDRSFFPRILRILRLSK 637 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccch----------HHHHHHHHHHhhcc---CccceeehhhhhcchhHHHHhcccC
Confidence 666777777777665433 1111111 11111122222222 211111111122222 4444543 4
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHh
Q 004761 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHF 719 (732)
Q Consensus 663 s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l 719 (732)
.+...-.|++++.+++..+++++..+.+.|+++.+..+..... ...+..|..++..+
T Consensus 638 ~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 638 SDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred CCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 6677888999999999999999999999999998888765443 45566665555443
No 274
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=77.48 E-value=1e+02 Score=32.78 Aligned_cols=198 Identities=14% Similarity=0.083 Sum_probs=130.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhcc-C-CHHHHHHHHHHHHHhhcCCc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC--GAIPPLLSLLYS-E-AQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--G~I~~Lv~lL~s-~-~~~v~~~A~~~L~nLs~~~~ 519 (732)
.+....+|+.+...+-+.+..++-...++-+.....|...++. .-...+-.++.. . .+++.-++-..|......+.
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHH
Confidence 4556788888887777878877777777766554444443332 112222223322 1 24444444444544455555
Q ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hh-HHHHHhc--ch-HHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EY-KAKIGRS--GA-VKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~-k~~i~~~--g~-i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
-.+.+.....+......+..++-++...|..+...+.... .. .+.+... .. .+.--.++++++--.+..++++|.
T Consensus 158 LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg 237 (342)
T KOG1566|consen 158 LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLG 237 (342)
T ss_pred HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHH
Confidence 5666667777888888888888888888888887765422 11 1222222 22 233556788889889999999999
Q ss_pred HhccCchhHHHHHh----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 595 NLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 595 nLs~~~~n~~~lv~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
.+-....|...|.+ ......++.+| +++..++-.|..+.+..+..+.
T Consensus 238 ~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 238 ELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99998888776554 46788888888 8888999999999998877653
No 275
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=77.38 E-value=80 Score=34.77 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC-----CHHHHHHHHHHHHHhhc-CCchHHH-HHHcCCH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE-----AQLTQEHAVTALLNLSI-NDENKAM-IAEAGAI 530 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~-----~~~v~~~A~~~L~nLs~-~~~~k~~-i~~~g~l 530 (732)
+.++..+|+++|+++..++...|....+......+++.+... ...+...=++.|.-|.. ....|.+ +++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 347788999999999999999999988887777777665421 12334444555554533 3345554 4478899
Q ss_pred HHHHHHHcC
Q 004761 531 EPLIHVLKS 539 (732)
Q Consensus 531 ~~Lv~lL~~ 539 (732)
+.+..+|..
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999998865
No 276
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.04 E-value=19 Score=44.34 Aligned_cols=140 Identities=20% Similarity=0.170 Sum_probs=102.5
Q ss_pred hHHHHHHHhc----CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCch
Q 004761 446 YVKKLIEDLN----STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 446 ~i~~Lv~~L~----s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
+.|.+++..+ ..+|+.|..|.-+|..+..-+.+. .+ ...|.|+..+. ++++.++.+++-+++-|+..-+|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 3455555553 356888988888888877554332 22 45889999997 78999999999999988765333
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
- ++ -.-+.|...|.+.++.+|.+|..+|.+|... ..|--.|.++.+..+|.++++++...|-.....|+.
T Consensus 995 l---ie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 L---IE-PWTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred c---cc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 1 11 2356677889999999999999999999864 455556899999999999988877776655555544
No 277
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.93 E-value=1.6 Score=46.66 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
...|..-.|-||.+=.++-|.++|||+.| |+.-.. ..+.||+|++..
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 35667778999999999999999999988 554333 235699998764
No 278
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=76.75 E-value=34 Score=38.28 Aligned_cols=110 Identities=19% Similarity=0.075 Sum_probs=74.4
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc--------h-----HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Q 004761 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE--------N-----KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALF 553 (732)
Q Consensus 488 ~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~--------~-----k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~ 553 (732)
.+..|+.+|.+ +++...|...+.-|..+ +. + |+++.. ..+|.|++..+..+.+.+.+-..+|.
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 45567777766 55666677777666554 21 1 233332 24666777666666667888888888
Q ss_pred HhccCchhHHHHHhc-chHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 554 SLSVLEEYKAKIGRS-GAVKALVDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 554 ~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
++..+-.....+.+. ..+|.|++-|...+...+..++.+|..+....
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 876643333333333 68899999999899999999999999887765
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.54 E-value=14 Score=43.92 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=34.2
Q ss_pred CccccccCcccCCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHGLNICPKTRQ 282 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~ 282 (732)
..-.|..|.-...=|++ -.|||.|-++|.+ .+...||.|.-
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 34579999999999998 5899999999988 45578999964
No 280
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=76.44 E-value=1.3e+02 Score=35.15 Aligned_cols=162 Identities=13% Similarity=0.148 Sum_probs=93.1
Q ss_pred hhccCCHHHHHHHHHHHHHhhcCCchHHHHH----HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc--
Q 004761 495 LLYSEAQLTQEHAVTALLNLSINDENKAMIA----EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS-- 568 (732)
Q Consensus 495 lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~----~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-- 568 (732)
.+-....+.+--|+-+|.-+..+...-..+. -...+..++..+. +++..+..+.++|.|+-.+..++..+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLE 630 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3344556666667777766655433222222 1224555565555 66778888999999998887777776654
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CchhHHHHHhhchHHHHHHhc----CC--ChHHHHHHHHHHHHHhCCh
Q 004761 569 GAVKALVDLLGSGTLRGRKDAATALFNLSI--FHENKARIIQAGAVKHLVDLM----DP--STGMVDKAVALLANLSTVG 640 (732)
Q Consensus 569 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~--~~~n~~~lv~~G~V~~Ll~lL----~~--~~~l~e~al~iL~nLa~~~ 640 (732)
-.+..+.+.=...+...+.+......|++. ...+-. .|..+.|...+ .+ +-+..-..+.+|.+|+..+
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 222222222112233444444444445543 222221 34444444444 22 2234456778889999988
Q ss_pred hhHHHHHHcCcHHHHHHHHhc
Q 004761 641 EGRLAIAREGGIPSLVEVVES 661 (732)
Q Consensus 641 ~~r~~i~~~~~I~~Lv~lL~~ 661 (732)
.....+.+.-.+..+++.++.
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 888888877778888888765
No 281
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=76.36 E-value=36 Score=40.95 Aligned_cols=181 Identities=18% Similarity=0.214 Sum_probs=111.8
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC--CchHHHH
Q 004761 448 KKLIEDL-NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN--DENKAMI 524 (732)
Q Consensus 448 ~~Lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~~k~~i 524 (732)
..+++.+ ....+.++..+...+.++++.-+. .....+.++.+..+...+...+++.|...+.++... ... =
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~---d 312 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD---D 312 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---h
Confidence 3444444 344567777777888888865433 455668888999999888888999998888777532 221 1
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC--chh
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF--HEN 602 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--~~n 602 (732)
......+.++.....++...+...+.....|...-.. ..+....+++...++++........+..-...++.+ .+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence 1234677888888888888888888777776542111 233334567777787776555555555544444432 223
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL 636 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL 636 (732)
...+....++|.+-.+. +.+..+....+....++
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~ 425 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGL 425 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhcccccc
Confidence 44455555566666665 55555554444444444
No 282
>PF04641 Rtf2: Rtf2 RING-finger
Probab=76.15 E-value=2.8 Score=43.78 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=32.1
Q ss_pred CccccccCcccCCCceec-CCCcccchHHHHHHHhcC
Q 004761 238 PYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHG 273 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~ 273 (732)
..+.|+||++.+++||+. .-|+-|.+.+|-.|+...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 467899999999999976 589999999999999754
No 283
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.14 E-value=1.7 Score=46.42 Aligned_cols=51 Identities=16% Similarity=0.467 Sum_probs=36.4
Q ss_pred CCccccccCcccCCCcee-----c-CCCcccchHHHHHHHhcCC--CCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVI-----V-ASGQTYERVFIQKWLDHGL--NICPKTRQTLAHTNL 289 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~-----~-~~g~ty~r~~I~~~~~~~~--~~cP~~~~~l~~~~l 289 (732)
|-.-.|-||-+.+ |+. + .|||+|.-.|+..||.... .+||.|+-.+.....
T Consensus 2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 4445799996654 332 3 4999999999999998653 479999855544433
No 284
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=75.96 E-value=1.4e+02 Score=33.53 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHh-hcCCchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHh
Q 004761 500 AQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDL 577 (732)
Q Consensus 500 ~~~v~~~A~~~L~nL-s~~~~~k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l 577 (732)
..+-+..|+.-|..+ +.+......-.-...+..++++|.. .+...+..|+.+|..++.....+-.=...-+|..+++.
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 344455666644444 3332221110011235667788877 56778899999999988644322211122466777777
Q ss_pred hcCCCHHHHHHHHH-HHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHH--cCcHH
Q 004761 578 LGSGTLRGRKDAAT-ALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAR--EGGIP 653 (732)
Q Consensus 578 L~~~~~~~~~~Al~-aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~--~~~I~ 653 (732)
-.+....+...|.. ++.-++++.+-+. |..+..++ ..+....-.++..+..|+..-. .+.+.. .+..|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~-~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLS-AEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC-HHHHHHhhhhhhh
Confidence 77666655555444 3444555544332 22233333 2233333344445555554221 222322 45789
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 654 SLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 654 ~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
.+++-..+.+..+|..|+.+|..+..
T Consensus 452 ~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 99999999999999999999988765
No 285
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=75.84 E-value=54 Score=39.80 Aligned_cols=181 Identities=15% Similarity=0.021 Sum_probs=110.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----ccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL----YSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL----~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+.+-..+.+.++..+.+|+..+........ .....|....+..++ ...|..+.-.|+..|.-++..-..--.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 455566778889999999998887775432 122233333333333 245667777777777777643111111
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-c-h
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-H-E 601 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-~-~ 601 (732)
=...+.++.|+..+.....+++..+..++-.... .......++.+..++++++++.+..+...+.-.... + .
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 1134567888888877666666665555543332 111224668888899999999888766666544332 2 2
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
+...-.-.++++.++... +.+..+...|+.+++.+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 222223345777777777 7788888888887776643
No 286
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=75.32 E-value=41 Score=40.78 Aligned_cols=145 Identities=13% Similarity=0.080 Sum_probs=95.0
Q ss_pred chHHHHHHh-hcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHH
Q 004761 569 GAVKALVDL-LGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAI 646 (732)
Q Consensus 569 g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i 646 (732)
|.+..++.. +.+.+..+...|+.+|..|+..-..-..=...++.+.+++-+ +....+.+.++.++...+...
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------ 367 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------ 367 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------
Confidence 344444444 345577788888888888876433223334457788888888 666777888777777665511
Q ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 647 AREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
.-...++.+...+.++++..+..+...+.......+ .....-.-.++++.++....+-+..+|..|..++.-+
T Consensus 368 ~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 368 PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 112246777788899999999988877776665432 2222222346788888888777788888887766544
No 287
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=75.28 E-value=21 Score=34.15 Aligned_cols=143 Identities=20% Similarity=0.172 Sum_probs=83.6
Q ss_pred HHHHHHhhc--cCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHH
Q 004761 489 IPPLLSLLY--SEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKI 565 (732)
Q Consensus 489 I~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i 565 (732)
+..++..|. ...++++-.|.-++..+- +..+....+ -.-+.+-..+..+..+....+..++..|-.. .+....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 344555544 245566666666665552 222333222 1233344455555556777777777777553 3444444
Q ss_pred -HhcchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChH-HHHHHHHHHHH
Q 004761 566 -GRSGAVKALVDLLG--SGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTG-MVDKAVALLAN 635 (732)
Q Consensus 566 -~~~g~i~~Lv~lL~--~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~-l~e~al~iL~n 635 (732)
...|.++.++.++. ..+......++.+|..=|. ++++...+...+++.|-+++ +++.. ++..|+-+|..
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 45699999999998 5667777777777755554 45666666667788888888 33344 55555555543
No 288
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.82 E-value=2.6e+02 Score=36.08 Aligned_cols=196 Identities=18% Similarity=0.137 Sum_probs=108.9
Q ss_pred cCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhccCCHHHHHHHHHHHHH-hhcCC
Q 004761 443 TTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGN--CGAIPPLLSLLYSEAQLTQEHAVTALLN-LSIND 518 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~--~G~I~~Lv~lL~s~~~~v~~~A~~~L~n-Ls~~~ 518 (732)
+.+.|-++.++-++ ..+..+..|+--+..+++.. +..+.. .-.||.|.++=..++..+|... .-++| |..+.
T Consensus 954 qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM-~sIW~~Li~D~ 1029 (1702)
T KOG0915|consen 954 QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAM-TSIWNALITDS 1029 (1702)
T ss_pred ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHH-HHHHHHhccCh
Confidence 34445555555443 24556677777777777554 222222 1367777777777888877644 55555 44443
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCCCHHHHH---HHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSGTLRGRK---DAATALF 594 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~---~Al~aL~ 594 (732)
.+...-.-...++-|+.-|.+....+|+.++.+|..|....++-...-.. .....+...+.+-...+++ .++.+|.
T Consensus 1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222345666666666667889999999999997644332222111 3444555555443344444 4555666
Q ss_pred HhccC-----chhHHHHHhhchHHHHHHh--cCCChHHHHHHHHHHHHHhCChhh
Q 004761 595 NLSIF-----HENKARIIQAGAVKHLVDL--MDPSTGMVDKAVALLANLSTVGEG 642 (732)
Q Consensus 595 nLs~~-----~~n~~~lv~~G~V~~Ll~l--L~~~~~l~e~al~iL~nLa~~~~~ 642 (732)
.||.- +..+.+-+-..++|.|++- ++.-..+..-++.++..|+.+..+
T Consensus 1110 Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 55441 1222222223344444332 144567788899999999876544
No 289
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.91 E-value=24 Score=37.37 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=93.4
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..+...+..|.+.+++....++..|+.|+...++...-+.. -.|..+++-+++....+-..|+.++..+...-++..
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-- 164 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-- 164 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34677889999999999999999999999776654433332 356677777888888888899998888754322221
Q ss_pred HHcCCHHHHH-HHHcCCC---HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 525 AEAGAIEPLI-HVLKSGN---GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 525 ~~~g~l~~Lv-~lL~~~~---~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
.+ .++.++ .+|..++ .-+++.|-.+|..+..+-. ..-+++.|...+++.+++++..++.+..+.
T Consensus 165 ~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 165 DQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 11 244444 4444432 4467777777766643211 113567777778888888887777665544
No 290
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.84 E-value=1.4e+02 Score=33.66 Aligned_cols=107 Identities=13% Similarity=0.018 Sum_probs=66.7
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHH-hcchHHHH
Q 004761 497 YSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIG-RSGAVKAL 574 (732)
Q Consensus 497 ~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~L 574 (732)
.+++..++..|++.|.|.+..-..+..-...-.+..++.-|-+ .+.++...+..+|..+...-.+....- -..+.-.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 4567788999999999998762222222222345566654444 457788888888876654222221110 11233455
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 575 VDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 575 v~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
..+..+.+++.+.+|..++..|+.....+
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 66777888999999999999998755433
No 291
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=73.67 E-value=1.2e+02 Score=37.96 Aligned_cols=223 Identities=15% Similarity=0.156 Sum_probs=121.5
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhc---c-ChhhHHHHHhcCCHHHHHHhhccCCH-HHHHHHHHHHHHhhc---
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAK---H-NMENRMIIGNCGAIPPLLSLLYSEAQ-LTQEHAVTALLNLSI--- 516 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~---~-~~~~r~~i~~~G~I~~Lv~lL~s~~~-~v~~~A~~~L~nLs~--- 516 (732)
..+|.+|.++.....++|..|+..|..+.. . .+.+-..+.+ =.+|.|-.++.+.+. .++..-+..|..|+.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 346888888888888999999988876642 2 2222222222 245556666655222 222111122222221
Q ss_pred ---------------C-CchH-----------HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc-
Q 004761 517 ---------------N-DENK-----------AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS- 568 (732)
Q Consensus 517 ---------------~-~~~k-----------~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~- 568 (732)
+ +++. ..+ ..++=.....+|....+-++..-+-.|.-|+ ..+|..
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~k 613 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEK 613 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhcc
Confidence 1 1110 000 0111112223444444344443333333333 222322
Q ss_pred ---chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHH
Q 004761 569 ---GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 569 ---g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
-.++-|+.+|.+.+...+-+=.-.|..+|.+-+ .+-++.+.+|.|.+-| +.++.+...|++.|..|+...--+.
T Consensus 614 sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 614 SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence 256777778877766655433334444444322 2236778888888888 8889999999999999987654332
Q ss_pred -HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 645 -AIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 645 -~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
++.+ .+..+.-+|-+++.-.+..++.++.....
T Consensus 692 ~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 692 PAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 2222 34444556667788889999999988765
No 292
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.53 E-value=2.8 Score=44.59 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=43.0
Q ss_pred CceecCCCcccchHHHHHHHhcCCCCCCCCCCCC--CC---CCCcccHHHHHHHHHH
Q 004761 251 DPVIVASGQTYERVFIQKWLDHGLNICPKTRQTL--AH---TNLIPNYTVKAMIENW 302 (732)
Q Consensus 251 dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l--~~---~~l~pn~~l~~~i~~~ 302 (732)
-|=++.||||+|-.|+.+-+..+...||+||.+. .. ..+..|+.+-..|+..
T Consensus 21 ~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 21 IPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3566779999999999998888878899999984 22 4688899998888876
No 293
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=73.38 E-value=66 Score=38.78 Aligned_cols=190 Identities=16% Similarity=0.081 Sum_probs=101.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
..++.....++....+.+..+......++..- ...+..+.....+|.+-.+..+.+..+....+..+.+++---. +..
T Consensus 355 ~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ 433 (759)
T KOG0211|consen 355 QLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KER 433 (759)
T ss_pred cchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCc
Confidence 33556666666655555555555555554321 1223334444456766666666666666666555555432111 111
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
- -.-.++.++..++...++++.+....+..+-... ...........+|.++.+-.....+++.+.+..+.-++....
T Consensus 434 t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 434 T-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred C-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 1 1123555666777777888888877765543322 222333344567777777766667777777777777665433
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
..+...-..+.+...+ +.-..+.+.|...|..++.
T Consensus 512 -~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 512 -VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred -hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 2222222333333333 3334555666666655543
No 294
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=73.22 E-value=48 Score=39.80 Aligned_cols=191 Identities=17% Similarity=0.109 Sum_probs=114.1
Q ss_pred HHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHH--HHHHHHcCCCH-H
Q 004761 468 ELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDENKAMIAEAGAIE--PLIHVLKSGNG-G 543 (732)
Q Consensus 468 ~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~--~Lv~lL~~~~~-e 543 (732)
.|.+....++++...+.+.|++..+..+++. .....+..++..+.|++...+++........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7778899999999999999999999999985 567889999999999987665544443222222 33334444443 6
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH-HhccCchhHHHHHhhchHHH-HHHhc--
Q 004761 544 AKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALF-NLSIFHENKARIIQAGAVKH-LVDLM-- 619 (732)
Q Consensus 544 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~-nLs~~~~n~~~lv~~G~V~~-Ll~lL-- 619 (732)
.-.+|+.+|..+....+. -...+. +..+...+. ...........++....+.+ +..++
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~---------------r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVF---------------RNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccc---------------hHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 777888888777654332 111111 111111111 11122222222232233333 44445
Q ss_pred CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 004761 620 DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQ 676 (732)
Q Consensus 620 ~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~ 676 (732)
+...+.+-.|++++.+++.. ++....+.+.++++.+...-. ......++.+..++-.
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 45666788899999998764 455556667778877776532 2244555555555443
No 295
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=72.19 E-value=94 Score=36.02 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=58.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+..+..++.+....+..++..|++.|-.+|+++++.-..++ ..|+.+|.++++.-...+-.+|..|-..+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d----- 127 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQD----- 127 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcC-----
Confidence 34478889999999999999999999999999877665554 47999999888665555555554442111
Q ss_pred HHHcCCHHHHHHHHc---CCCHHHHHHHHHHHH
Q 004761 524 IAEAGAIEPLIHVLK---SGNGGAKENSAAALF 553 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~---~~~~e~~~~Aa~~L~ 553 (732)
-.+.+..|...+. +++..+|+.++..|.
T Consensus 128 --~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1234555554443 566677887776663
No 296
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=70.76 E-value=17 Score=34.25 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=60.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs 515 (732)
...+..|-+.|.++++.++..|+..|-.+.+.. ......++..+++..|+.++. ..++.++..++..+.+-+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999874 446677777899999999987 467889999999997765
No 297
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=70.41 E-value=23 Score=33.47 Aligned_cols=39 Identities=26% Similarity=0.580 Sum_probs=23.7
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHh-cCCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLD-HGLNICPKTRQTLAH 286 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~-~~~~~cP~~~~~l~~ 286 (732)
-...|.||- ||++|.-.-.....+ .|..+||.||.+|..
T Consensus 96 ~~~~Y~Cp~------------C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 96 NNAYYKCPN------------CQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CCcEEECcC------------CCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 357899995 555555322222222 244789999998854
No 298
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=70.07 E-value=1.8 Score=50.23 Aligned_cols=63 Identities=14% Similarity=0.424 Sum_probs=47.1
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHh--cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLD--HGLNICPKTRQTLAHTNLIPNYTVKAMIEN 301 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~--~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~ 301 (732)
+..||||.+...+|+.+.|-|.||+.|+-.-|. .+...||+|+.........--..-.+++++
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence 456999999999999999999999999988554 445679999866654444434444555553
No 299
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=69.25 E-value=1.4e+02 Score=30.50 Aligned_cols=127 Identities=15% Similarity=0.078 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CC------------------ChHHHHHHHHHHHHHhCChhhH
Q 004761 583 LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DP------------------STGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 583 ~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~------------------~~~l~e~al~iL~nLa~~~~~r 643 (732)
..-...++..+..|...++....+...+.++.+.+.| .. ...+...-...|+.|+.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 5556677778888888877777666788888887777 11 0123344567889999999999
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
..+-+.+....+..++...+. ......+|.+|-...+.+.+. .|-..+.+++..+|..|...|+.+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999876533 223333444442222222222 345677788999999999988765
No 300
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.81 E-value=90 Score=37.01 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=59.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGA 529 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~ 529 (732)
+=+.|.++|..++-..++.|+.|-. ++ +.+ ..+|.+...|.+.+.-++.+|+-++..+-..- .. +-.++
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckLkE--~E----Lle-pl~p~IracleHrhsYVRrNAilaifsIyk~~---~~-L~pDa 172 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKLKE--PE----LLE-PLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EH-LIPDA 172 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhcCc--HH----Hhh-hhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hh-hcCCh
Confidence 3356788888777777777766531 11 222 57888889999999999999999887765330 01 11223
Q ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHh
Q 004761 530 IEPLIHVLK-SGNGGAKENSAAALFSL 555 (732)
Q Consensus 530 l~~Lv~lL~-~~~~e~~~~Aa~~L~~L 555 (732)
-+.+-..|. ..++..+.+|.-.|+..
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~ 199 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTT 199 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhc
Confidence 333444443 34567777776666543
No 301
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=67.97 E-value=24 Score=32.68 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=60.5
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcc---CCHHHHHHHHHHHHHhhc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYS---EAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s---~~~~v~~~A~~~L~nLs~ 516 (732)
...+..|-+.|+++++.++..|+..|-.+.+.... ....++...++..|+.++.. .+..++..++..+.+.+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44578888999999999999999999999988755 56677776888889999875 478899999999987753
No 302
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=67.80 E-value=23 Score=32.80 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=59.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHchhcC---ChHHHHHHHHHHHHhhccccC
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLSQSG---TPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll~~g---~~~~k~kA~~lL~~l~~~~~~ 725 (732)
++..|-+.|.++++.++..|+.+|-.+..+.+. ....+.....+..|+.++... ++.+|+++..++......-.+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 577888889999999999999999988887655 666777766677788988763 478999999999887665443
No 303
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=67.76 E-value=3.7 Score=44.54 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=27.3
Q ss_pred ceecCCCcccch-----HHHHHHHhc------------CCCCCCCCCCCCCCCC
Q 004761 252 PVIVASGQTYER-----VFIQKWLDH------------GLNICPKTRQTLAHTN 288 (732)
Q Consensus 252 PV~~~~g~ty~r-----~~I~~~~~~------------~~~~cP~~~~~l~~~~ 288 (732)
|..-+|++-||| +|+.+||.. |..+||.||.+++-.+
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 334467788866 799999952 4568999999987544
No 304
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=67.45 E-value=30 Score=41.61 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=93.7
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA--EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~--~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
..+|.|++.....+...+.+=+.+|.++-.+-. ++.+. -+..+|.|++.|.-.+...|..+..+|.-+......-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 578888888875554455555555555433321 22222 235678888899989999988888887665432211111
Q ss_pred HHhcchHHHHHHhhcCCC---HHHHHHHHHHHHHhcc-CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHH
Q 004761 565 IGRSGAVKALVDLLGSGT---LRGRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVAL 632 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~---~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~i 632 (732)
--..-.+|.++.+=++.+ ..++..|+.+|..|.. .+.+.-.-.+-.++..|...| ++..-+++.|..+
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 112246677777765543 6788999999999998 565655666677888899999 5555566666654
No 305
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=67.09 E-value=44 Score=32.08 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=72.0
Q ss_pred CHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 488 AIPPLLSLLYSE-AQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 488 ~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
.++.|+++|+.+ +..++.+++++|+.|-.-+..+-.....+ .+.- .-...+......... ....+. .-+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~--~~~~~~~~~~~~~l~-~~~~~~---~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSK--SSENSNDESTDISLP-MMGISP---SSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCcc--ccccccccchhhHHh-hccCCC---chHHHH
Confidence 456778888765 58899999999999954333332221110 0000 000011111111110 011110 112222
Q ss_pred hcchHHHHHHhhcCCCH-HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHh
Q 004761 567 RSGAVKALVDLLGSGTL-RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~~~-~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa 637 (732)
-..++..|+.+|++.+. .-...++.|+.++....+.+..-.=.-++|.++..+ ..+....+..+.-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33467888999987653 233356667666654322222111134778888888 455577777666666553
No 306
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=66.35 E-value=14 Score=32.07 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=54.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
.....+..|.++.+.+|-.++..|+.|..... ...+...+.+..+...|+++|+-+--+|+..|..|+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 45778888999999999999999999987654 1111223566777888889999999999999988874
No 307
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=66.19 E-value=24 Score=33.35 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=61.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhc-CChHHHHHHHHHHHHhhcccc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQS-GTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~~~ 724 (732)
++..|.+.|.++++.++..|+.+|-.+..+.+ .....+.....+.-|..++.. .++.+++++..+++.....-.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 57788888889999999999999998888755 466678888889999999988 568999999988887765444
No 308
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.63 E-value=3.7 Score=43.82 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=38.0
Q ss_pred ccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.-.|=||+.=-+|=|++||-|. .|..|-+.-- -.+..||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 5679999999999999999997 7999866543 223579999998743
No 309
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=65.40 E-value=23 Score=33.28 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=61.3
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhccccC
Q 004761 650 GGIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 650 ~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~~~~~ 725 (732)
.++..|.+.|.++++..+..|+.+|-.+..+. ......+...+.+..|..++... ++++|+++..++..-...-.+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35788888899999999999999988887774 45677788888899999999854 478999999988877665443
No 310
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.30 E-value=40 Score=39.62 Aligned_cols=128 Identities=14% Similarity=0.174 Sum_probs=81.3
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDL-LGSGTLRGRKDAATALFNLSIFHENKARI 606 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~n~~~l 606 (732)
.+++.|...++..+..+++.++..+-.++..-+ ...+..-++|.|-.+ +++.+..++.+++.|+..+. ..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~l 460 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QRL 460 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HHH
Confidence 456666666666777777777777776654322 223333456666665 34556788888888888776 233
Q ss_pred HhhchHHHHHHhc----CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCC
Q 004761 607 IQAGAVKHLVDLM----DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGS 663 (732)
Q Consensus 607 v~~G~V~~Ll~lL----~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s 663 (732)
-..-+++.+..++ ..++.++...+.+..++.....+...+..+..+|.++-+.-.+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 3344555555554 46778888888888887654333355555677888887776554
No 311
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=64.53 E-value=2.1e+02 Score=30.89 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=108.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhc-CC-chHHHHHHc-C-CHHHHHHHHcCC----C---------HHHHHHHHHH
Q 004761 489 IPPLLSLLYSEAQLTQEHAVTALLNLSI-ND-ENKAMIAEA-G-AIEPLIHVLKSG----N---------GGAKENSAAA 551 (732)
Q Consensus 489 I~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~-~~k~~i~~~-g-~l~~Lv~lL~~~----~---------~e~~~~Aa~~ 551 (732)
+..+-+.|++....+...+++.|..+.. +. .....+... + .++.+..++... . +.+|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6677788888888888899999999876 54 334444432 2 344555555321 1 1778777777
Q ss_pred HHHhccC--chhHHHHHh-cchHHHHHHhhcCCCHHHHHHHHHHHHH-hccCc----hhHHHHHhhchHHHHHHhc-CCC
Q 004761 552 LFSLSVL--EEYKAKIGR-SGAVKALVDLLGSGTLRGRKDAATALFN-LSIFH----ENKARIIQAGAVKHLVDLM-DPS 622 (732)
Q Consensus 552 L~~Ls~~--~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~Al~aL~n-Ls~~~----~n~~~lv~~G~V~~Ll~lL-~~~ 622 (732)
+..+... ...+..+.. .+.+..+.+-|..+++......+.+|.. +...+ ..|..+....++..|..+. ..+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 7766553 344555554 4789999999999889999999998884 44433 3566778888999999977 444
Q ss_pred h----HHHHHHHHHHHHHhCChh
Q 004761 623 T----GMVDKAVALLANLSTVGE 641 (732)
Q Consensus 623 ~----~l~e~al~iL~nLa~~~~ 641 (732)
. .+.+.+-..|..+|..+.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 4 788899999999997654
No 312
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.02 E-value=25 Score=33.16 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=61.1
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|.+.++.++..|+..|-.+.+.... ....++...++..|+.++.. .+..++..++..+...+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999987653 46667777899999999987 78999999999998775
No 313
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.99 E-value=1.5e+02 Score=35.06 Aligned_cols=103 Identities=21% Similarity=0.098 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARI 606 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~l 606 (732)
+|.+..+++-..+.+..+|...+.+|.-++........-.-.+....+..-+.+..+.++..|+.||..+=..+.+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 35666677777777888999999998888763333333344466777777788888999999999998885322110
Q ss_pred HhhchHHHHHHhc--CCChHHHHHHHHHH
Q 004761 607 IQAGAVKHLVDLM--DPSTGMVDKAVALL 633 (732)
Q Consensus 607 v~~G~V~~Ll~lL--~~~~~l~e~al~iL 633 (732)
+..++..+..++ +++..++..|+..+
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 123666777777 77888777665433
No 314
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=63.09 E-value=2.4e+02 Score=30.98 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=60.3
Q ss_pred HHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCc-hhHHHH
Q 004761 489 IPPLLSLLY-SEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLE-EYKAKI 565 (732)
Q Consensus 489 I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~-~~k~~i 565 (732)
|..++.=+. +....++..++--|..-+.++..+..+...|..+.++..+.. ++......+++++..+...+ .+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 445555555 344677888888888778888999999999999999998854 44435555555555554433 333443
Q ss_pred HhcchHHHHHHhhc
Q 004761 566 GRSGAVKALVDLLG 579 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~ 579 (732)
-..+.+..++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 34456666677776
No 315
>PLN02189 cellulose synthase
Probab=62.91 E-value=5.8 Score=48.42 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=38.3
Q ss_pred ccccccCcc-----cCCCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLE-----LMIDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~-----lm~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
.-.|+||++ .+-+|-+. .||.-.||.|.+-=.++|+..||.|+.++.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 337999987 45677765 388889999997777889999999999886
No 316
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=62.63 E-value=14 Score=41.21 Aligned_cols=176 Identities=18% Similarity=0.110 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc----CCchHHHHH---HcCCHHHHHH
Q 004761 463 ASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI----NDENKAMIA---EAGAIEPLIH 535 (732)
Q Consensus 463 ~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~----~~~~k~~i~---~~g~l~~Lv~ 535 (732)
..|++.+.-+.-+..-......-.++...+...|.+..-..++.+.+++.|++. .-.+..... ..-.+..++.
T Consensus 409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~ 488 (728)
T KOG4535|consen 409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLR 488 (728)
T ss_pred HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 344444444443332222222233455556666666677889999999999853 111211111 1112223332
Q ss_pred HHc---CCCHHHHHHHHHHHHHhccCchh--HHHHHh--cchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCchhHHH-H
Q 004761 536 VLK---SGNGGAKENSAAALFSLSVLEEY--KAKIGR--SGAVKALVDL-LGSGTLRGRKDAATALFNLSIFHENKAR-I 606 (732)
Q Consensus 536 lL~---~~~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~--~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~n~~~-l 606 (732)
.-. .....++.+|..+|.+++..-+. +...++ .|.+..+..- .-.+...++-+|+.++.||-.++.-+-+ +
T Consensus 489 ~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~ 568 (728)
T KOG4535|consen 489 SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTA 568 (728)
T ss_pred HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCC
Confidence 221 12366888899999888753221 111111 1333333222 1234567899999999999988754221 1
Q ss_pred -HhhchHHHHHHhc--CCChHHHHHHHHHHHHHhC
Q 004761 607 -IQAGAVKHLVDLM--DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 607 -v~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~ 638 (732)
...-+.+.|..++ ..+-.+...|+++|..-..
T Consensus 569 ~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 569 PWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred CchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 1223566677776 3455566777777765543
No 317
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.51 E-value=1.9e+02 Score=34.34 Aligned_cols=130 Identities=24% Similarity=0.173 Sum_probs=80.7
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHV-LKSGNGGAKENSAAALFSLSVLEEYKAKI 565 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 565 (732)
++=+.+-+++.+.|+-++...+.++. ++..-. ...+++..|+.+ .++++.++|..|.-+|.-++..+.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~a-lAy~GT-----gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp----- 587 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLA-LAYVGT-----GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP----- 587 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHH-HHHhcc-----CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh-----
Confidence 34444555666777877777766664 222110 123456777776 567789999999988877665332
Q ss_pred HhcchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH
Q 004761 566 GRSGAVKALVDLLGS-GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL 636 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL 636 (732)
..++..|.+|.. .++-++..|+.||.--|...+++..+ ..|-.+. ++..-++.-|+-.++-+
T Consensus 588 ---~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 588 ---EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred ---hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHH
Confidence 245777888865 57889999999998888877766532 2222223 44444555555555543
No 318
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=62.39 E-value=33 Score=32.19 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=58.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcc------CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYS------EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s------~~~~v~~~A~~~L~nLs 515 (732)
...+..+.+.|.++++.++..|+..|-.+.+.. ......++..+++.-|+.++.. .+..++...+..+..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999998754 3467778888899999999953 46889999888886654
No 319
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=61.68 E-value=21 Score=27.36 Aligned_cols=33 Identities=15% Similarity=0.396 Sum_probs=21.3
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhc-----C-CCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH-----G-LNICPKTRQ 282 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~-----~-~~~cP~~~~ 282 (732)
+.|.||.|++ .|+...+.+++.. + ...||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 4689999766 4455555665542 2 346999975
No 320
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.45 E-value=5.6 Score=34.61 Aligned_cols=27 Identities=22% Similarity=0.640 Sum_probs=23.6
Q ss_pred CCCcccchHHHHHHHhcCCCCCCCCCCC
Q 004761 256 ASGQTYERVFIQKWLDHGLNICPKTRQT 283 (732)
Q Consensus 256 ~~g~ty~r~~I~~~~~~~~~~cP~~~~~ 283 (732)
.|.|.|--.||.+|++.. ..||.+.++
T Consensus 80 ~CNHaFH~hCisrWlktr-~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR-NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc-CcCCCcCcc
Confidence 489999999999999975 689999764
No 321
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=61.10 E-value=5.2 Score=35.36 Aligned_cols=57 Identities=19% Similarity=0.426 Sum_probs=34.5
Q ss_pred CCCCCC-CccccccCcccCCCceecC-CC-----cccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004761 232 SGVPIP-PYFRCPLSLELMIDPVIVA-SG-----QTYERVFIQKWLDHGLNICPKTRQTLAHTNL 289 (732)
Q Consensus 232 ~~~~~p-~~f~Cpi~~~lm~dPV~~~-~g-----~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 289 (732)
..+.-| +.+.|||++++-+.=|.+. ++ .-||..++.+-...| ..=|.+|.|++...+
T Consensus 32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~sMI 95 (113)
T PF06416_consen 32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPSMI 95 (113)
T ss_dssp CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTE
T ss_pred hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChhhE
Confidence 445555 5678999999999999874 22 359999999999876 456999998876543
No 322
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=61.02 E-value=6.2 Score=36.38 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=38.7
Q ss_pred ccccccCcccCCC--cee-cCCCc------ccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 239 YFRCPLSLELMID--PVI-VASGQ------TYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 239 ~f~Cpi~~~lm~d--PV~-~~~g~------ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
...|.||.+-..+ =|+ +++|. -||..|+++|-. .+..+|.-|..--..+..|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I~y~F~fPf 86 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNIKYWFNFPF 86 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccceEEEEeCCC
Confidence 6779999998888 665 67774 589999999964 3477999887544445555
No 323
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=60.75 E-value=99 Score=27.12 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=51.9
Q ss_pred hhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 608 QAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 608 ~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
..+.+..|++.+ .+.....+.++.+|..|+.++.+...+.+-|+...|.++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 457788888888 5556688999999999999999999999999888877776656666555444443
No 324
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=59.91 E-value=3e+02 Score=31.09 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=97.5
Q ss_pred CchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCch
Q 004761 444 TPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
...|..++..+... ..+.+..|+..|..+...+. ........ ..+..++..|.. .+......|+++|..++.+...
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 44566777777654 45677889997777765542 22222111 234567777776 7888899999999999876543
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHH-HHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSA-AALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa-~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 599 (732)
+-.=-..-++..+++.-++...++...|. .++.-++.+.... .|..+..++.+.+....-.+++.+..|...
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 32111112334444444444443333332 3333333332222 122233333334433344445455544432
Q ss_pred chhHHHH--HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 600 HENKARI--IQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 600 ~~n~~~l--v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
-. ++.+ +=..+.|.+++-. +.+..++..|+.+|..+..
T Consensus 437 l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 437 LS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred cC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 11 1111 1235677777777 6667777778877776643
No 325
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.83 E-value=51 Score=31.77 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=64.7
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCC-HHHHHHHHHHHHHhccC----ch
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGT-LRGRKDAATALFNLSIF----HE 601 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~----~~ 601 (732)
....+..+|++.+.+.|-.++..+..+..... .+.+.+. ..+..|+.+|+..+ +..++.|+.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35567788888888888777766666554322 3444333 46788888888754 66788888888877553 33
Q ss_pred hHHHHHh---hchHHHHHHhcCCChHHHHHHHHHHHHHh
Q 004761 602 NKARIIQ---AGAVKHLVDLMDPSTGMVDKAVALLANLS 637 (732)
Q Consensus 602 n~~~lv~---~G~V~~Ll~lL~~~~~l~e~al~iL~nLa 637 (732)
-..++.. .+.++.++.+++. ....+.++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 2223322 2344455554421 455666777776653
No 326
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=58.62 E-value=6.9 Score=34.46 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.9
Q ss_pred cCCCCCCCccccccCcccCCCcee--cCCCcccchHHHH
Q 004761 231 TSGVPIPPYFRCPLSLELMIDPVI--VASGQTYERVFIQ 267 (732)
Q Consensus 231 ~~~~~~p~~f~Cpi~~~lm~dPV~--~~~g~ty~r~~I~ 267 (732)
...+.+.++-.|++|...+.+++. -|+||.|-..|+.
T Consensus 70 ~~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 70 SRSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 344567888889999999998876 4899999888865
No 327
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=58.16 E-value=38 Score=40.81 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=90.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN--CGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENK 521 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~--~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k 521 (732)
..+|.|++...+.....+-.=+..|.+...+-|. ..+.. ....|.|++.|+-.|..++..+++++.-+-.. ..-.
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 4567888888755444555555566666655443 22222 35778888889999999988888888655322 1111
Q ss_pred HHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 522 AMIAEAGAIEPLIHVLKSGN---GGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~---~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
..-+ ...++.++.+=.+.+ ..+|+.|+-+|..|.. .+...-.-.+..++.+|...|.+...-+++.|..+=
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1111 123444554444333 6788899999988887 444444444556788888888776666677776653
No 328
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=58.09 E-value=70 Score=28.07 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=49.0
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Q 004761 486 CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAA 551 (732)
Q Consensus 486 ~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~ 551 (732)
.+.+..|+..++.+.....+.++..|..+...+.....+.+-|+...|.++=..-++..+...-.+
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 355666777777777778899999999999999998999999988887666654455544443333
No 329
>PLN02195 cellulose synthase A
Probab=57.70 E-value=7.7 Score=47.12 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=38.4
Q ss_pred ccccCcc-----cCCCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 241 RCPLSLE-----LMIDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 241 ~Cpi~~~-----lm~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.|.||++ .+-+|-+. .||.-.||.|.+-=-++|+..||+|+.++..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 4888887 67788776 4889999999976677899999999999873
No 330
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=57.65 E-value=31 Score=31.69 Aligned_cols=51 Identities=12% Similarity=0.335 Sum_probs=41.7
Q ss_pred CCccccccCcccCCCceecC----CCcccchHHHHHHHh--cCCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVA----SGQTYERVFIQKWLD--HGLNICPKTRQTLAHT 287 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~----~g~ty~r~~I~~~~~--~~~~~cP~~~~~l~~~ 287 (732)
|.-+.|-||.|.-.|+-.+. ||...|-.|--.-|+ .-++.||+|+..+...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 46688999999999998873 899999999888655 3468999998877553
No 331
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=57.60 E-value=2.5e+02 Score=29.39 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=107.9
Q ss_pred cCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh--
Q 004761 486 CGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY-- 561 (732)
Q Consensus 486 ~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-- 561 (732)
..+++.|+..|.. ..+.++-.|..+|.++- + .+.++.+-+..+.+..++++....++..+-..+..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 4689999998875 45777788889997765 2 22344444555455555555555555544221100
Q ss_pred ---HHHHH--------hcchHHHHHHhhcCCC-HH-HHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHH
Q 004761 562 ---KAKIG--------RSGAVKALVDLLGSGT-LR-GRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVD 627 (732)
Q Consensus 562 ---k~~i~--------~~g~i~~Lv~lL~~~~-~~-~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e 627 (732)
..... ..+-+..|-..|.+.+ +- -+..|+..|.|+-. ..+|..|++=+ .++.-.+.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRH 205 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHH
Confidence 00000 0112333333333322 11 12233333333211 12444455555 34455566
Q ss_pred HHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC
Q 004761 628 KAVALLANLSTVGEGRLAIAREGGIPSLVEVVES--GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT 705 (732)
Q Consensus 628 ~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~ 705 (732)
.+..+|+.|-+ .-+|+.|.+.|.. ..+.++..|+.+|..+.. +..++.|.+.+....
T Consensus 206 EvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 206 EVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcH
Confidence 67777776532 2358888888754 578899999999987665 234566777777777
Q ss_pred hHHHHHHHHHHHHhh
Q 004761 706 PRAKEKAQQLLSHFR 720 (732)
Q Consensus 706 ~~~k~kA~~lL~~l~ 720 (732)
+-+++-+.-.|.++.
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776653
No 332
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.52 E-value=42 Score=31.43 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=57.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhc------CChHHHHHHHHHHHHhhcc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQS------GTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~------g~~~~k~kA~~lL~~l~~~ 722 (732)
++..|.+.|.++++..+..|+.+|-.+..+. ......+...+.+.-|+.++.. .++.+|.+...++..-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5777888899999999999999999888875 4566778888888889998863 2468999988888766543
No 333
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.00 E-value=3.4e+02 Score=31.45 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=73.3
Q ss_pred hcchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 567 RSGAVKALVDL-LGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 567 ~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
..|++..|+++ +.+++..++++|+-||.-+|..+.+ .++..+++| +.+..++-..+-+|..-|.....+
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 45788888888 7778899999999999988876544 455667777 445555555555566555543322
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CChHhHHHHHhCCCHHHHHHchhcCCh
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL-HSPKFCTLVLQEGAVPPLVGLSQSGTP 706 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~-~~~~~~~~v~~~G~i~~L~~Ll~~g~~ 706 (732)
. ++..|-.++.....-++..|+-++.-+.. .+++.-..+ .+++..+..++.+.++
T Consensus 621 ~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe 676 (926)
T COG5116 621 V------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHE 676 (926)
T ss_pred H------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhH
Confidence 2 24444455666666677766655544433 233321111 1344555555554443
No 334
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.97 E-value=1.7e+02 Score=36.71 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=96.9
Q ss_pred hHHHHHHhhcC----CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 570 AVKALVDLLGS----GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 570 ~i~~Lv~lL~~----~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
..|.++++.++ ++|..+.+|..||+.+..-... .-.-..|.|+..+ ++++.++-+++..++-|+-.-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn- 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN- 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc-
Confidence 56777888854 4788999999999877553221 1123567788888 56677777777777766542211
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
+++ ..-+.|...++..++.++..|+.+|.+|..++ .+.--|.++-+...+.+++++++.-|....+-+
T Consensus 995 --lie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 --LIE-PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred --ccc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 111 23566777788899999999999999998853 234468999999999999999999998554444
No 335
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=56.75 E-value=45 Score=30.89 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=58.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhccCC--HHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYSEA--QLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s~~--~~v~~~A~~~L~nLs 515 (732)
...+..|-+.|+++++.++..|+..|-.+.+.. ......+...+++..|+.++.... +.++..++..+.+-+
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 455788889999999999999999999999874 446677777889999999987643 348888888887664
No 336
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=56.40 E-value=1.3e+02 Score=28.94 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=67.3
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc--CCHHHHHHHHcCCC-HHHHHHHHHHHHHhcc----Cch
Q 004761 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA--GAIEPLIHVLKSGN-GGAKENSAAALFSLSV----LEE 560 (732)
Q Consensus 488 ~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~--g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~----~~~ 560 (732)
.+..+..+|+++++..+..++..+.-++.... .+.+.+. ..+..++.+|+..+ ..+++.+..+|..+.. .++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44457778888888888888887766654321 3444333 35778888998765 5566777777766543 333
Q ss_pred hHHHHH-hc--chHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 561 YKAKIG-RS--GAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 561 ~k~~i~-~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
....+. .. +.++.++.+++. ......++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 333333 22 677788887774 4455666666666644
No 337
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=55.77 E-value=3.8e+02 Score=32.16 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=69.8
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH-hCChhhHHHH
Q 004761 569 GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL-STVGEGRLAI 646 (732)
Q Consensus 569 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL-a~~~~~r~~i 646 (732)
..|..|..+-.+.=+.++..++.++++|..+.+..++ ..+..|+.-| ++...+...|...|.+| |.||..+..+
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 4566666666666688999999999999887655443 2345667777 77778888888888876 6677655443
Q ss_pred HHcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhc
Q 004761 647 AREGGIPSLVEVVES--GSQRGKENAASILLQLCL 679 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~~--~s~~~~e~A~~~L~~L~~ 679 (732)
+ ..+..++.+ .+..++.+|+-.|.++..
T Consensus 380 i-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 380 I-----DEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred H-----HHHHHHHcccCccccceeehhhhhhhhHh
Confidence 3 344555543 356677788888866544
No 338
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.66 E-value=12 Score=40.74 Aligned_cols=59 Identities=15% Similarity=0.372 Sum_probs=39.6
Q ss_pred CccccccCcccCCC---ceecCCCcccchHHHHHHHh----cCC---CCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 238 PYFRCPLSLELMID---PVIVASGQTYERVFIQKWLD----HGL---NICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 238 ~~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~----~~~---~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
.-|.|-||.+-..- =+.++|+|.||+.|...|+. .|. -.||.++- .....| -.++.++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C---~~~a~~-g~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC---GSVAPP-GQVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC---cccCCc-hHHHHHHH
Confidence 34779999887543 34589999999999999985 332 24665542 223333 36777774
No 339
>PLN02436 cellulose synthase A
Probab=53.85 E-value=10 Score=46.47 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=38.2
Q ss_pred ccccccCcc-----cCCCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLE-----LMIDPVIVA--SGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~-----lm~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
.-.|.||++ ..-||-+.+ ||.-.||.|.+-=.++|+..||.|++++.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 347999986 456677653 88889999997777889999999999886
No 340
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=53.83 E-value=1.9 Score=34.98 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=22.6
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
+..||.|...| .-..|+.+|-.|=..+... ..||.|+++|.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~~--a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKKE--AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEEE--EE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECccccccceec--ccCCCcccHHH
Confidence 46799998853 4445788888885544433 47999999874
No 341
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=53.82 E-value=2.6e+02 Score=28.53 Aligned_cols=136 Identities=20% Similarity=0.102 Sum_probs=80.3
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 448 KKLIEDL-NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 448 ~~Lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+.|+-.+ +..+++.+...++.|..++.+...+.. -++..|..+...+......-+.+.+..+...+ ++..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHH---
Confidence 3444433 456788889999999999987611111 23445555566666666555666665554321 1111
Q ss_pred cCCHHHHHHH--Hc------CC--CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 004761 527 AGAIEPLIHV--LK------SG--NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLL-GSGTLRGRKDAATALFN 595 (732)
Q Consensus 527 ~g~l~~Lv~l--L~------~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~n 595 (732)
+.+..++.. ++ .+ ..+.....+..+..++....+ .-...++.+..+| ++.++.++..|+.+|..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 334444333 11 11 244555556677777765444 1124677788888 77788888899999999
Q ss_pred hc
Q 004761 596 LS 597 (732)
Q Consensus 596 Ls 597 (732)
||
T Consensus 149 Lc 150 (234)
T PF12530_consen 149 LC 150 (234)
T ss_pred HH
Confidence 98
No 342
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=53.66 E-value=9.4 Score=39.84 Aligned_cols=43 Identities=21% Similarity=0.479 Sum_probs=33.2
Q ss_pred ccccccCccc----CCCceecCCCcccchHHHHHHHhcCCCCCCCCCC
Q 004761 239 YFRCPLSLEL----MIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQ 282 (732)
Q Consensus 239 ~f~Cpi~~~l----m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~ 282 (732)
++.|||+.+- +.+|..++|||+.-..|.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4569999876 4678889999998666666665667 89999965
No 343
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=53.25 E-value=1e+02 Score=36.24 Aligned_cols=253 Identities=13% Similarity=0.083 Sum_probs=134.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGA 529 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~ 529 (732)
+++.+.-.+.+++..-...|..-. +..-+-++..-.++.|+..+...+ .-...+..|..+...-.... ...+.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i 331 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRI 331 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccch
Confidence 445555556666655444444322 122233444456666766665544 22333444444432211111 44568
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhh
Q 004761 530 IEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA 609 (732)
Q Consensus 530 l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~ 609 (732)
++.|+++++..+..+|..-+.-+-.... .--..+....++|-+..-+.+.++..++.+++++..|+..=.-+ .+..
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~ 407 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNG 407 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcH
Confidence 9999999999888777554443332221 11234455678899999999999999999999988776521111 1222
Q ss_pred chHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHH
Q 004761 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGG-IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTL 687 (732)
Q Consensus 610 G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~-I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~ 687 (732)
.....+.++- +.+..+.....-+|..++.+-. +..+.+. +..+.+-+++.-...+..++.+++..+..-+ ..
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~---~~ 481 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD---QS 481 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccccc---hhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc---hh
Confidence 2333333333 4445555555555555544321 1123332 3444445555555678888888887766321 11
Q ss_pred HHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 688 VLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 688 v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
=+...++|.++-+.-....-++..|-..++.+
T Consensus 482 ~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 482 EVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 12234566666666666555555555544443
No 344
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=53.24 E-value=4.2 Score=50.21 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=38.0
Q ss_pred CCccccccCcccCC-CceecCCCcccchHHHHHHHhcCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMI-DPVIVASGQTYERVFIQKWLDHGLNICPKTR 281 (732)
Q Consensus 237 p~~f~Cpi~~~lm~-dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~ 281 (732)
-..|.|+||+++|+ -=-+.-|||-||-.|+..|+... ..||.|.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~-s~~~~~k 1195 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS-SRCPICK 1195 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh-ccCcchh
Confidence 34569999999999 55677899999999999999875 6899996
No 345
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=52.99 E-value=50 Score=32.24 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=35.1
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP-NYTVKAMIENWCEE 305 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p-n~~l~~~i~~~~~~ 305 (732)
-+..|.||.|..-+ ||+ .-+..+ .+||.||..|...+-.+ ...+++.|+..-..
T Consensus 110 ~~~~y~C~~~~~r~----------sfd-----eA~~~~-F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 110 ENNYYVCPNCHVKY----------SFD-----EAMELG-FTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred cCCceeCCCCCCcc----------cHH-----HHHHhC-CCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 35789999887522 444 444445 79999999987654443 44567777666544
No 346
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.66 E-value=2.9e+02 Score=28.82 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=100.0
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-------hhhHHHHHhcCCHHHHHHhhccCC----HHHHHHHHHHH
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-------MENRMIIGNCGAIPPLLSLLYSEA----QLTQEHAVTAL 511 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-------~~~r~~i~~~G~I~~Lv~lL~s~~----~~v~~~A~~~L 511 (732)
-+|..+-+++.|.+... ...++..|..++... .++|-.+.=.+.+|.++.-+..++ ......++..|
T Consensus 62 f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 62 FEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred chhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 35555666688877653 234555555555321 123433333345666666665555 12334455666
Q ss_pred HHhhcCCchHHHHHHcCCHHHHHHHHcCCC----HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHH
Q 004761 512 LNLSINDENKAMIAEAGAIEPLIHVLKSGN----GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRK 587 (732)
Q Consensus 512 ~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~----~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~ 587 (732)
..++.... .+.+..++.....+. .+....++..|..--. ++ .....+..|+.+|.++.+-.+.
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHH
Confidence 66663211 112333333332221 2233333333332111 11 1124567788999988899999
Q ss_pred HHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhC
Q 004761 588 DAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLST 638 (732)
Q Consensus 588 ~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~ 638 (732)
..+..|+.+-.+-+.+.. ..++.+.+|++++ ......+|+.+|.+...
T Consensus 207 ~~L~iL~~ll~~~d~~~~-~~~dlispllrlL--~t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP-HGADLISPLLRLL--QTDLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHhccccCCCC-cchHHHHHHHHHh--CCccHHHHHHHHHHHHh
Confidence 999999999876654433 6677999999999 33456788888887644
No 347
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=52.36 E-value=2.7e+02 Score=28.37 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=80.3
Q ss_pred HHHHH-hhccCCHHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 490 PPLLS-LLYSEAQLTQEHAVTALLNLSIND-ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR 567 (732)
Q Consensus 490 ~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~-~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 567 (732)
+.|+. +-+..+++.+...+.+|..++.++ .+... ++..|..+...+..+.+..+...+..+-..++ +..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH---
Confidence 44444 334578999999999999998876 33332 35556666777766665555555555433211 111
Q ss_pred cchHHHHHHh--hc------CC--CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHH
Q 004761 568 SGAVKALVDL--LG------SG--TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLAN 635 (732)
Q Consensus 568 ~g~i~~Lv~l--L~------~~--~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~n 635 (732)
+.+..++.. ++ ++ ..+.......++..+|...++ .....++.+..+| ..+......++..|..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 334444443 11 11 234444555677788876666 3344677777777 3455667778888998
Q ss_pred Hh
Q 004761 636 LS 637 (732)
Q Consensus 636 La 637 (732)
||
T Consensus 149 Lc 150 (234)
T PF12530_consen 149 LC 150 (234)
T ss_pred HH
Confidence 88
No 348
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.70 E-value=5.1e+02 Score=31.25 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=46.4
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Q 004761 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL 558 (732)
Q Consensus 488 ~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 558 (732)
..+.|=.+|++....+...|.+++.+|... +-..+.. ++..|--++.+.....|-.|..+|..++..
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 344455566677888999999999887532 1122211 566666777788888999999999888753
No 349
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=51.42 E-value=13 Score=45.80 Aligned_cols=41 Identities=34% Similarity=0.575 Sum_probs=30.0
Q ss_pred CCCCCccccccCc--ccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 234 VPIPPYFRCPLSL--ELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 234 ~~~p~~f~Cpi~~--~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.++|++++||=|. +...|+ .+.+|.-. ..+.||+||.||..
T Consensus 909 NPL~PHY~Cp~Cky~Ef~~d~-svgsGfDL-----------pdK~CPkCg~pl~k 951 (1444)
T COG2176 909 NPLPPHYLCPECKYSEFIDDG-SVGSGFDL-----------PDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCCccccCCCCceeeeecCC-CcCCCCCC-----------CCCCCCcCCCcccc
Confidence 4789999999986 566666 44444332 35789999999865
No 350
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.20 E-value=1.1e+02 Score=34.49 Aligned_cols=259 Identities=12% Similarity=0.039 Sum_probs=130.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-ccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL-YSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.+.+..+.....+++...+..|++.|.+.+...+.-...... -.+..++.-| ...+.+++..++.+|..+.....++.
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 344556667777788888889999999999875543333332 2344444444 44568899999988877653222221
Q ss_pred ---HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc--hhHHHHHh--cchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 523 ---MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE--EYKAKIGR--SGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 523 ---~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
.+. ..--.+..+..+.+++.|.+|...+..|+... ..+....+ .+...+++--+.+.++.+- .|+++...
T Consensus 336 l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~ 412 (533)
T KOG2032|consen 336 LESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELR 412 (533)
T ss_pred hhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHH
Confidence 111 12333556677888999999988888887533 33443332 1222344444455555433 35555554
Q ss_pred hccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHH-----H-hCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHH
Q 004761 596 LSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLAN-----L-STVGEGRLAIAREGGIPSLVEVVESGSQRGKEN 669 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~n-----L-a~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~ 669 (732)
.|...-.+... .+.++..++.. +. -...+.| | .-+++. ..+ .......++.+.-+..++.
T Consensus 413 ~c~p~l~rke~--~~~~q~~ld~~-----~~--~~q~Fyn~~c~~L~~i~~d~-l~~----~~t~~~~~f~sswe~vr~a 478 (533)
T KOG2032|consen 413 TCYPNLVRKEL--YHLFQESLDTD-----MA--RFQAFYNQWCIQLNHIHPDI-LML----LLTEDQHIFSSSWEQVREA 478 (533)
T ss_pred hcCchhHHHHH--HHHHhhhhHHh-----HH--HHHHHHHHHHHHHhhhCHHH-HHH----HHHhchhheecchHHHHHH
Confidence 44433222221 22333222111 00 1111111 0 001110 000 0111111222223344544
Q ss_pred HHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 670 AASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 670 A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
|+..--++--+ .+..+..+-..-+...|..+.+...+.+++.|.++|..+.
T Consensus 479 avl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 479 AVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 44333333222 2233333333334667777888888898888888887664
No 351
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=50.18 E-value=67 Score=29.41 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=51.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHh-CCCHHHHHHchh-----cCC---hHHHHHHHHHHHHhh
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQ-EGAVPPLVGLSQ-----SGT---PRAKEKAQQLLSHFR 720 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~-~G~i~~L~~Ll~-----~g~---~~~k~kA~~lL~~l~ 720 (732)
.+..|.+-|.+.++.++-.|+.+|-.+|.+++ .++..+.+ ..+|..+...-. .|+ ..+|.+|.+++..+-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 34566777777889999999999999999655 44444443 345666666655 333 468999999999886
Q ss_pred cc
Q 004761 721 NQ 722 (732)
Q Consensus 721 ~~ 722 (732)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 53
No 352
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.12 E-value=4.1 Score=42.08 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=30.2
Q ss_pred ccccccCcccCCCceecCCCccc-chHHHHHHHhcCC--CCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTY-ERVFIQKWLDHGL--NICPKTRQTL 284 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty-~r~~I~~~~~~~~--~~cP~~~~~l 284 (732)
+.+|-||++.-.|=|.++|||-. |-.| |. ..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 78999999999999999999964 3333 43 2588887653
No 353
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=50.08 E-value=1.8e+02 Score=34.41 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=87.1
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHH
Q 004761 569 GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAI 646 (732)
Q Consensus 569 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i 646 (732)
.++|.|..-+++.+..+++.++..+-+.+..-+ ...++.-++|.|..+. .....++..++.+++.+.. .-.+..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-~lD~~~v 465 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-RLDKAAV 465 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-HHHHHHh
Confidence 356777777888889999999999888876544 4566677778877776 5566778888888888772 1112222
Q ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC
Q 004761 647 AREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT 705 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~ 705 (732)
. .-+..+.+-++..++......+.+.-++....+.. ..++-+.++|.++-+...+.
T Consensus 466 ~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 466 L--DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred H--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2 22445555555667777776666666665533332 45666778888888887765
No 354
>PF14353 CpXC: CpXC protein
Probab=49.79 E-value=10 Score=34.81 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=33.5
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcC--CCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHG--LNICPKTRQTL 284 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l 284 (732)
+..||-|+..+.=.|-..=.-+-+....++-++.. ..+||.||...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 36799999998888766555566677777777432 25799999865
No 355
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=49.53 E-value=69 Score=29.63 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=58.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhcCC--hHHHHHHHHHHHHhhccc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQSGT--PRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~g~--~~~k~kA~~lL~~l~~~~ 723 (732)
++..|-+.|.++++.++..|+.+|-.+..+. ......+...+.+..|..++.... +.+++++..++......-
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999998888874 456677778888899998887754 348999888887765544
No 356
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.25 E-value=1.6e+02 Score=34.87 Aligned_cols=127 Identities=17% Similarity=0.036 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC
Q 004761 584 RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~ 662 (732)
++.+-+++.+..|=..+..-. +=+|.+..+++-. +.+..++..++.+|+.|..+...+...+-.+.+..+..-+...
T Consensus 61 RIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 444444555444433322111 2235555566655 6788899999999999987544343333344566666666677
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHH
Q 004761 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLS 717 (732)
Q Consensus 663 s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~ 717 (732)
.+.++..|+.+|..+=....+ -+..++..+..+++++. +++|+.|...+.
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~d-----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKD-----EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 889999999999887642111 01245777888888875 688887765543
No 357
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.12 E-value=79 Score=37.10 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=64.2
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHH------cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh---
Q 004761 613 KHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAR------EGGIPSLVEVVESGSQRGKENAASILLQLCLHSP--- 682 (732)
Q Consensus 613 ~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~------~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~--- 682 (732)
..+.++| +++-.++-..+.+.+|++.+-.....+.+ ...+..+++.+...+|-++..|+.++..+|.-+.
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 3456667 44555555666777787654322222332 1235556666677899999999999999987432
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
..+.++ +.....-+|..+.-+|++|..++.-|
T Consensus 382 ~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 382 GRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred chHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 223333 44455667777888899988876543
No 358
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=47.74 E-value=75 Score=27.48 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 530 IEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 530 l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
+...+..|.++.+.+|.+++..|..|..... ...+-..+++..+...|++.++=+--+|+.+|..|+...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4555666777778899999999999877555 12222336778888889998888888999999888775433
No 359
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=47.71 E-value=1.1e+02 Score=35.38 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=81.4
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
|.+..++..+.+.+..++..++.+|.-++-.-.......-+|.+..|...+-...+.+|..|..+|+.+-....+-+.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-- 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-- 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--
Confidence 778888888889999999999999988875544444455567777777766666678999999999887543322211
Q ss_pred hcchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCchh--------------HHHHHhhchHHHHHH
Q 004761 567 RSGAVKALVDLLGSG-TLRGRKDAATALFNLSIFHEN--------------KARIIQAGAVKHLVD 617 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~~~n--------------~~~lv~~G~V~~Ll~ 617 (732)
.....|+.+++++ +.++++. ||.|+...+.. -.+++.+.++|.+-+
T Consensus 169 --~~~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd 229 (885)
T COG5218 169 --RIVNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGD 229 (885)
T ss_pred --HHHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcc
Confidence 1234677777764 4556654 45566554322 234555666666643
No 360
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.48 E-value=5.2e+02 Score=30.14 Aligned_cols=177 Identities=20% Similarity=0.119 Sum_probs=86.6
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch----HHHHHHcC---CHHHHHHHHcCCCHHHHHHHHHHHHHhccC--
Q 004761 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN----KAMIAEAG---AIEPLIHVLKSGNGGAKENSAAALFSLSVL-- 558 (732)
Q Consensus 488 ~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~----k~~i~~~g---~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-- 558 (732)
.+-.|+.+|+.-+.+-.+....-+.. .. ... ...+...| ++..+.+.+.++..... .|+.++..+...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhh
Confidence 45557777776665555444444432 11 112 23333444 45566666766642211 122222222110
Q ss_pred chhHHHHHhcchHHHHHHhhcCC----CHHHHHHHHHHHHHhcc----CchhHHHHHhhchHHHHHHhc-----CCChHH
Q 004761 559 EEYKAKIGRSGAVKALVDLLGSG----TLRGRKDAATALFNLSI----FHENKARIIQAGAVKHLVDLM-----DPSTGM 625 (732)
Q Consensus 559 ~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~----~~~n~~~lv~~G~V~~Ll~lL-----~~~~~l 625 (732)
... ...+..+.+++++. .+.....|+.++.+|.. ..+.+...+....++.+.+.| ..+..-
T Consensus 389 ~Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 389 YPT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred cCC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 011 13556777777653 34556666666666543 322221223334566666655 112222
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChH
Q 004761 626 VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE---SGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 626 ~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~---~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
...++.+|+|+.. + ..+..+..++. ..+...+-.|+++|..+....+.
T Consensus 463 ~~~~LkaLGN~g~-~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 463 IQLYLKALGNAGH-P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR 513 (574)
T ss_pred eeeHHHhhhccCC-h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch
Confidence 3334555555432 1 23455555554 23567898999999988754444
No 361
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=47.47 E-value=46 Score=31.07 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=57.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhcCC-hH---HHHHHHHHHHHhhccc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQSGT-PR---AKEKAQQLLSHFRNQR 723 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~g~-~~---~k~kA~~lL~~l~~~~ 723 (732)
++..|.+.|.++++.++..|+.+|-.+..+.+ .....+.....+..|..++.+.. .. +|+++..+|......-
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999988888764 56666766678888999887654 33 8999988888776554
No 362
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.27 E-value=9.2 Score=38.80 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=29.4
Q ss_pred CCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 250 IDPVI-VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 250 ~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
.||.- ++|+|.||-.|...-. ...||.|++++....+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 67764 6899999988854322 2389999999776666666
No 363
>PRK10869 recombination and repair protein; Provisional
Probab=47.00 E-value=5.3e+02 Score=30.12 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhcc-h--HHHHHHHHHH
Q 004761 31 QKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHS-E--PLMMKIQSSS 107 (732)
Q Consensus 31 ~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~~Sklyll~~~-~--~i~~~f~~~~ 107 (732)
+++..+..+++..|..-++||...+. .|.-..-|++-...|..+..+.+.+... |-++.+ + .+...+..+.
T Consensus 177 ~~~~~~~~~~~d~l~fql~Ei~~~~l--~~gE~eeL~~e~~~L~n~e~i~~~~~~~----~~~L~~~~~~~~~~~l~~~~ 250 (553)
T PRK10869 177 QQQSQERAARKQLLQYQLKELNEFAP--QPGEFEQIDEEYKRLANSGQLLTTSQNA----LQLLADGEEVNILSQLYSAK 250 (553)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCcccHHHHHHHHH
Confidence 44556677788899999999988763 4555666777777888888888877552 333343 2 4555554444
Q ss_pred HHHHHHHHhhcccCCCCChhhHHHHHHHHHhhhHH--HHHHHHHHHHHHccCCCCcCchHHHH----------HHHHHcC
Q 004761 108 LEICHILYRLLQSSPSNSSMSAVQHCMQEIHCLKQ--ERIMEHITKAMRGLQDDTIRCTDHLV----------KIIESLG 175 (732)
Q Consensus 108 ~~i~~~L~~lp~~~~~~s~e~~~~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~----------~i~~~~~ 175 (732)
..+... ...+ . .++.+.+.+..+.+ +++...+...+ ++.++|++.|. .+.+|.|
T Consensus 251 ~~l~~~------~~~d--~--~~~~~~~~l~~~~~~l~~~~~~l~~~~----~~~~~dp~~l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 251 QLLSEL------IGMD--S--KLSGVLDMLEEALIQIQEASDELRHYL----DRLDLDPNRLAELEQRLSKQISLARKHH 316 (553)
T ss_pred HHHHHH------hhhC--H--hHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 444333 1111 1 22333343443333 45555554433 33456665444 5556667
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 004761 176 LTSNQELLKESLAVEMERIRA 196 (732)
Q Consensus 176 l~~~~~~~~e~~~l~~~~~~~ 196 (732)
.+..++..-...++++++..
T Consensus 317 -~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 317 -VSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 57788777777777777654
No 364
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.94 E-value=6.5e+02 Score=31.15 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcc--------CCHHHHHHHHHHHHHhhcC---CchHHHHHHcCCH
Q 004761 463 ASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYS--------EAQLTQEHAVTALLNLSIN---DENKAMIAEAGAI 530 (732)
Q Consensus 463 ~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s--------~~~~v~~~A~~~L~nLs~~---~~~k~~i~~~g~l 530 (732)
..|...+..+++.. .++ -.|.++.++..|.+ .++.-.+-|++++++|+.- ..--...++.=.+
T Consensus 390 ~Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv 464 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 35666666666432 221 13667777777762 3566778899999998731 1111223333345
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCch
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG-SGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
+.+...+++...-.|..|++++..++..+ .+..-.-..++......|. +.+..++..|+-||..+-.+.+
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 55566677777889999999999988532 1111112235666677777 5667888889999998877654
No 365
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=46.58 E-value=5.4e+02 Score=30.07 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=64.6
Q ss_pred hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHhH
Q 004761 609 AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH--SPKFC 685 (732)
Q Consensus 609 ~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~--~~~~~ 685 (732)
+|.+..+++-+ +++..+...++.+|+.+..+-.--....-.+.+..|.+-+....+.++..|+.+|..+-.. ++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 36666777777 7788899999999998876543333444455677777766666778888888888766432 2221
Q ss_pred HHHHhCCCHHHHHHchhcCC-hHHHHHHH
Q 004761 686 TLVLQEGAVPPLVGLSQSGT-PRAKEKAQ 713 (732)
Q Consensus 686 ~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~ 713 (732)
.+...|+.++|++. ..+|+.|.
T Consensus 169 ------~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 169 ------RIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred ------HHHHHHHHHHhcCcHHHHHHHHH
Confidence 22346677777765 45665553
No 366
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=46.32 E-value=14 Score=45.58 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=37.5
Q ss_pred cccccCccc-----CCCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 240 FRCPLSLEL-----MIDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 240 f~Cpi~~~l-----m~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
=.|.||++= +-+|-+. .||.-.||.|.+-=.++|+..||+|+.++.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 369999873 5667765 488889999997667789999999999886
No 367
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.14 E-value=1.5e+02 Score=31.50 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHH
Q 004761 536 VLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVK 613 (732)
Q Consensus 536 lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~ 613 (732)
.|.+.+.+.+..++-.|..|+.+.. +.+.. ...|-.+++-+++....+-+.|+.++..+..+-.+.-.- ...
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~--e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~----~ld 169 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHP--ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ----ELD 169 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 3444444444444445544444221 11111 135667777777777788888999888886643332211 233
Q ss_pred HHHHhc-----CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004761 614 HLVDLM-----DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676 (732)
Q Consensus 614 ~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~ 676 (732)
.++..| .++.-+++.|-.+|..++.+.... ..++.|...+++.++..+..++....+
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 333333 345567888888888776653211 235555666677777777666655443
No 368
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=45.71 E-value=16 Score=25.09 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q 004761 273 GLNICPKTRQT 283 (732)
Q Consensus 273 ~~~~cP~~~~~ 283 (732)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44689999875
No 369
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.00 E-value=3.1e+02 Score=35.48 Aligned_cols=141 Identities=12% Similarity=0.135 Sum_probs=80.7
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCchhHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS-VLEEYKAKI 565 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i 565 (732)
+.+..++..|..+...++..|+.+|.++..-+.. .+.....-..+...+.+.+..+|+.|+-.+...- ..++....+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 4566777777777788999999999888654322 1112222333444556667788888888876432 222222221
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL 636 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL 636 (732)
..-+.+-..+....+++.+++.+..+|...++-..+++ +...++.-. +++..+.+.+..++.++
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 12233333455678899999999999986554443332 111222222 33334566666665555
No 370
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=44.85 E-value=21 Score=37.91 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=42.6
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIEN 301 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~ 301 (732)
..+-+-||||.+-|.-|+.= .-||.-|-.|=. +-...||.|+.++.+ +-++++.+.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~ 104 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEA 104 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHh
Confidence 45668899999999999654 469999888843 234679999998863 245555555543
No 371
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=44.80 E-value=35 Score=32.74 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=23.2
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
-+..|.||-|.. .| ....-+.. +.+||.||.+|...
T Consensus 106 ~~~~Y~Cp~c~~------------r~---tf~eA~~~-~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 106 NNMFFICPNMCV------------RF---TFNEAMEL-NFTCPRCGAMLDYL 141 (158)
T ss_pred CCCeEECCCCCc------------Ee---eHHHHHHc-CCcCCCCCCEeeec
Confidence 468899998763 22 11222233 48999999998653
No 372
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.35 E-value=2.1e+02 Score=33.08 Aligned_cols=119 Identities=18% Similarity=0.089 Sum_probs=63.6
Q ss_pred CCHHHHHHh-hccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 487 GAIPPLLSL-LYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~l-L~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
|+|..|+.. .+..|.+++..|+-+|+-+|.++.+ .+...+++|. +.+..+|...|-+|.-.+.....+
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-- 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-- 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--
Confidence 344444444 3445677777777777766655432 3444555554 346777777766665444322211
Q ss_pred HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc
Q 004761 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL 619 (732)
-++..|-.++.+.+.-++..|+-++.-+.....-+..=--.++...+.+++
T Consensus 621 ----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI 671 (926)
T COG5116 621 ----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVI 671 (926)
T ss_pred ----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence 234555555666666677777777766644221110001134555666666
No 373
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.98 E-value=5.9e+02 Score=29.77 Aligned_cols=144 Identities=13% Similarity=0.174 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhcch------HHHHHH
Q 004761 30 IQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSE------PLMMKI 103 (732)
Q Consensus 30 ~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~~Sklyll~~~~------~i~~~f 103 (732)
+++...+..+++..+..-++||...+. .|.-...|+.-+..|..+..+.+.+... +.++.++ .+...+
T Consensus 180 l~~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~~----~~~L~~~~~~~~~~~~~~l 253 (563)
T TIGR00634 180 RQQKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQNA----LAALRGDVDVQEGSLLEGL 253 (563)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHHH----HHHHhCCccccccCHHHHH
Confidence 344556677889999999999988763 4555667777788888888888877542 3333433 455555
Q ss_pred HHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHhhhHH--HHHHHHHHHHHHccCCCCcCchHHHH----------HHH
Q 004761 104 QSSSLEICHILYRLLQSSPSNSSMSAVQHCMQEIHCLKQ--ERIMEHITKAMRGLQDDTIRCTDHLV----------KII 171 (732)
Q Consensus 104 ~~~~~~i~~~L~~lp~~~~~~s~e~~~~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~----------~i~ 171 (732)
..+...+... + + . .++.+.+.+..+.+ +++...+...+. +.+++++.+. .+.
T Consensus 254 ~~~~~~l~~~-----~---d--~--~~~~~~~~l~~~~~~l~d~~~~l~~~~~----~l~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 254 GEAQLALASV-----I---D--G--SLRELAEQVGNALTEVEEATRELQNYLD----ELEFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred HHHHHHHHHh-----h---h--H--hHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHH
Confidence 5555444433 1 1 1 23333333333332 444444444332 2345554443 444
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHH
Q 004761 172 ESLGLTSNQELLKESLAVEMERIRA 196 (732)
Q Consensus 172 ~~~~l~~~~~~~~e~~~l~~~~~~~ 196 (732)
++.| .+..++......++++++..
T Consensus 318 rKyg-~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 318 RKYG-ASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred HHhC-CCHHHHHHHHHHHHHHHHHH
Confidence 4555 46677777777777766543
No 374
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.55 E-value=5.9e+02 Score=29.67 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhcch----HHHHHHHH
Q 004761 30 IQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSE----PLMMKIQS 105 (732)
Q Consensus 30 ~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~~Sklyll~~~~----~i~~~f~~ 105 (732)
++++-++..+++.+|.-=++||-..+ +.+.-...|.+-+.-|..+..|.+.|.. .|-++.++ ++...+..
T Consensus 176 ~~~~~~e~~~~~d~L~fq~~Ele~~~--l~~gE~e~L~~e~~rLsn~ekl~~~~~~----a~~~L~ge~~~~~~~~~l~~ 249 (557)
T COG0497 176 LQEKERERAQRADLLQFQLEELEELN--LQPGEDEELEEERKRLSNSEKLAEAIQN----ALELLSGEDDTVSALSLLGR 249 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHhhHHHHHHHHHH----HHHHHhCCCCchhHHHHHHH
Confidence 45666778889999999999998766 3344577788888888888888888844 46666653 35555555
Q ss_pred HHHHHHHHHHhhcccCCCCChhhHHHHHHHHHhhhHH--HHHHHHHHHHHHccCCCCcCchHHHHHHHHH----------
Q 004761 106 SSLEICHILYRLLQSSPSNSSMSAVQHCMQEIHCLKQ--ERIMEHITKAMRGLQDDTIRCTDHLVKIIES---------- 173 (732)
Q Consensus 106 ~~~~i~~~L~~lp~~~~~~s~e~~~~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~---------- 173 (732)
....+... ...+ . ....+...+..+-+ +++...+...+ ++-++|++.|..+.++
T Consensus 250 a~~~l~~~------~~~d--~--~l~~~~~~l~ea~~~l~ea~~el~~~~----~~le~Dp~~L~~ve~Rl~~L~~l~RK 315 (557)
T COG0497 250 ALEALEDL------SEYD--G--KLSELAELLEEALYELEEASEELRAYL----DELEFDPNRLEEVEERLFALKSLARK 315 (557)
T ss_pred HHHHHHHh------hccC--h--hHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 54444321 1111 1 22333333332222 45555554444 4455666555544443
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 004761 174 LGLTSNQELLKESLAVEMERIRA 196 (732)
Q Consensus 174 ~~l~~~~~~~~e~~~l~~~~~~~ 196 (732)
.| .++.++......++.++...
T Consensus 316 Y~-~~~~~l~~~~~~~~~el~~L 337 (557)
T COG0497 316 YG-VTIEDLLEYLDKIKEELAQL 337 (557)
T ss_pred hC-CCHHHHHHHHHHHHHHHHHh
Confidence 44 34566656666666665543
No 375
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=42.82 E-value=3.1e+02 Score=26.90 Aligned_cols=115 Identities=20% Similarity=0.127 Sum_probs=70.8
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHH
Q 004761 570 AVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIA 647 (732)
Q Consensus 570 ~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~ 647 (732)
.++.++++.-+.+...+..|+..+.-+...+= +. .-++|.|+.+. ++++.+...|...+..+...-++--.-.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-----vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGL-----VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-----CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45667777777888888888888865543211 11 12788888888 8899999999999999976443321111
Q ss_pred HcCcHHHHHHHHhc--CCHH--H---HHHHHHHHHHHhcCChHhHHHHH
Q 004761 648 REGGIPSLVEVVES--GSQR--G---KENAASILLQLCLHSPKFCTLVL 689 (732)
Q Consensus 648 ~~~~I~~Lv~lL~~--~s~~--~---~e~A~~~L~~L~~~~~~~~~~v~ 689 (732)
-..|+..-..+-+. ++.. . ...-..-|+.++..+...+..++
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl 132 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL 132 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH
Confidence 11244444443322 1111 1 45566777777776666666553
No 376
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=42.53 E-value=21 Score=27.57 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=25.8
Q ss_pred ccccccCcccC--CCceec--CCCcccchHHHHHHHhcC
Q 004761 239 YFRCPLSLELM--IDPVIV--ASGQTYERVFIQKWLDHG 273 (732)
Q Consensus 239 ~f~Cpi~~~lm--~dPV~~--~~g~ty~r~~I~~~~~~~ 273 (732)
.-.||+|++.+ .|.+++ .||-.|=|.| |-..|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WEKAG 40 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH---HhhCC
Confidence 35799999999 888887 4999999999 54444
No 377
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=42.01 E-value=59 Score=30.31 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=56.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhccC-CHH---HHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYSE-AQL---TQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s~-~~~---v~~~A~~~L~nLs 515 (732)
...+..|-+.|+++++.++..|+..|-.+.+... ..+..+....++..|..++.+. ... +++.++..|...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4457888899999999999999999999998863 5566677778889999988643 333 7888888886654
No 378
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=42.01 E-value=17 Score=44.57 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=37.5
Q ss_pred cccccCcc-----cCCCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 240 FRCPLSLE-----LMIDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 240 f~Cpi~~~-----lm~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
-.|.||++ ..-||-+. .||.-.||.|.+-=.++|+..||.|+.++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 35888886 36678775 488889999997667889999999999886
No 379
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=40.99 E-value=2.2e+02 Score=27.21 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=68.7
Q ss_pred chHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 445 PYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
..+..|++.|+.. ++..++++++.|..+..-++-....+... .+.-. -...+..... ..+.+....+ .-..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~---~~l~~~~~~~-~~ee 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTD---ISLPMMGISP-SSEE 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchh---hHHhhccCCC-chHH
Confidence 4567788888755 58899999999998876665332221111 00000 0000111111 1111111111 1122
Q ss_pred HHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 524 IAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
..-.-++..|+.+|++.+. .-...++.++.++......+..-.-..++|.++..+++.+...++.-+.-|..|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2223356777778876642 222233333333322222222111225789999999877666666555444443
No 380
>PHA02862 5L protein; Provisional
Probab=39.91 E-value=21 Score=33.27 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=30.8
Q ss_pred ccccCcccCCCceecCCCc-----ccchHHHHHHHhc-CCCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVASGQ-----TYERVFIQKWLDH-GLNICPKTRQTLAH 286 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~~g~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~~ 286 (732)
.|=||.+-=.+. .-||+. -.-++|+++|+.. ++..||.|+.++.-
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 367777764444 345432 3458999999974 45689999998853
No 381
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=39.14 E-value=7.7e+02 Score=29.74 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=79.4
Q ss_pred CchHHHHHHHhc-C----C---CHHHHHHHHHHHHHHhc--cChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHH
Q 004761 444 TPYVKKLIEDLN-S----T---SNEIQASAAAELRLLAK--HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLN 513 (732)
Q Consensus 444 ~~~i~~Lv~~L~-s----~---~~~~~~~Al~~L~~La~--~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~n 513 (732)
.+.+++++.-|. + . +.-....|++.+.++.. .-+.--+-+.+.-.++.++..+++..--++-.|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 466778887773 1 1 22223345555554432 111112223333456667777888888888999999988
Q ss_pred hhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCC
Q 004761 514 LSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGT 582 (732)
Q Consensus 514 Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~ 582 (732)
++.+=...... ..+.+.....|++.+-.++..||-+|.-+..++.....+.+. +.++.|+.+-+.-+
T Consensus 487 ~eeDfkd~~il--l~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fe 555 (970)
T COG5656 487 IEEDFKDNGIL--LEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFE 555 (970)
T ss_pred HHHhcccchHH--HHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccccc
Confidence 86541111111 234566667777777778888888887777666555555544 55556655544433
No 382
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=39.11 E-value=32 Score=40.47 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=43.6
Q ss_pred CCCCCccccccCcccCCCce----ecC---CCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 004761 234 VPIPPYFRCPLSLELMIDPV----IVA---SGQTYERVFIQKWLDH-----GLNICPKTRQTLAHTNLIPNYTVKAMIEN 301 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV----~~~---~g~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~pn~~l~~~i~~ 301 (732)
...|+.-.|++|..-+.+|| +.+ +|+.+|-.||+.|.+. .+..||+| +.-|..
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC---------------~~Ci~s 155 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC---------------EECVGS 155 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH---------------HHHhhh
Confidence 44678889999999999977 334 8999999999999863 23457777 455677
Q ss_pred HHHH
Q 004761 302 WCEE 305 (732)
Q Consensus 302 ~~~~ 305 (732)
||.-
T Consensus 156 WsR~ 159 (1134)
T KOG0825|consen 156 WSRC 159 (1134)
T ss_pred hhhh
Confidence 8764
No 383
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=38.90 E-value=2.3e+02 Score=29.79 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=47.9
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHH--HHHhhchHHHHHHhc----C---------CChHHHHHHHHHH
Q 004761 569 GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKA--RIIQAGAVKHLVDLM----D---------PSTGMVDKAVALL 633 (732)
Q Consensus 569 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~--~lv~~G~V~~Ll~lL----~---------~~~~l~e~al~iL 633 (732)
-++|+++.++++.++..+..++.+|.++...-.... .+.+.|..+.+-+.+ . ....+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 478999999999999999999999999987543322 355566555444433 1 2334566677777
Q ss_pred HHHhC
Q 004761 634 ANLST 638 (732)
Q Consensus 634 ~nLa~ 638 (732)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 76644
No 384
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=38.67 E-value=20 Score=34.50 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=18.1
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQT 283 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~ 283 (732)
-+.||+|+-++.|. ....||.|+.|
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 68899986555442 34689999976
No 385
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=38.01 E-value=51 Score=32.27 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC-cccHHHHHHHHHHHHHcC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNL-IPNYTVKAMIENWCEENN 307 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l-~pn~~l~~~i~~~~~~~~ 307 (732)
-+..|.||-|..-+ ||+ .-+. ...+||.||.+|...+= .--..|+..|...-..-+
T Consensus 114 ~~~~Y~Cp~C~~ry----------tf~-----eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 114 NNMFFFCPNCHIRF----------TFD-----EAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCCEEECCCCCcEE----------eHH-----HHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 46889999876422 332 1222 34899999999876422 122456777766655433
No 386
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=37.79 E-value=4.9e+02 Score=27.12 Aligned_cols=217 Identities=16% Similarity=0.143 Sum_probs=113.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 491 PLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKS--GNGGAKENSAAALFSLSVLEEYKAKIGR 567 (732)
Q Consensus 491 ~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 567 (732)
.|-..|.++|..++..|+..|..+-.. +... ....-+..|+....+ .+......++..|..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 355678889999999999988775332 2211 111123444433322 23444444455555554322111110 1
Q ss_pred cchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 568 SGAVKALVDLLG--SGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 568 ~g~i~~Lv~lL~--~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
...+..+.+-.. .-....+..+...|..|..+......-...+.+..+++.+ ..++.-...+..++..+...=+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-- 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-- 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--
Confidence 112233333222 1234566677777777765533222223346777888888 5577767777777776644222
Q ss_pred HHHHHcCcHHHHHHHHh-------c---CCH--HHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHH
Q 004761 644 LAIAREGGIPSLVEVVE-------S---GSQ--RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEK 711 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~-------~---~s~--~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~k 711 (732)
+ ......+.+.+. + +++ -.++.-...|.+.-..++... .-++|.|++=+.++.+.+|.-
T Consensus 157 --~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 157 --I--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred --c--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHH
Confidence 1 223344444331 1 121 123333444433222244432 246899999999999999988
Q ss_pred HHHHHHHhhcc
Q 004761 712 AQQLLSHFRNQ 722 (732)
Q Consensus 712 A~~lL~~l~~~ 722 (732)
+...|..+-..
T Consensus 228 ~L~tL~~c~~~ 238 (262)
T PF14500_consen 228 SLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHH
Confidence 88877766443
No 387
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=37.56 E-value=11 Score=37.97 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=34.9
Q ss_pred CccccccCcc-cCCCc--eec--C-CCcccchHHHHHHHhcCCCCCC--CCCCCC
Q 004761 238 PYFRCPLSLE-LMIDP--VIV--A-SGQTYERVFIQKWLDHGLNICP--KTRQTL 284 (732)
Q Consensus 238 ~~f~Cpi~~~-lm~dP--V~~--~-~g~ty~r~~I~~~~~~~~~~cP--~~~~~l 284 (732)
.+-.||||.. -+-.| +++ | |=|..|-+|..+.|..|...|| -|+.-|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3457999973 34444 332 4 8899999999999999999999 665444
No 388
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=37.35 E-value=36 Score=32.36 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=34.0
Q ss_pred CccccccCcccCCCceecCCCc-----ccchHHHHHHHhcC-CCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQ-----TYERVFIQKWLDHG-LNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~-----ty~r~~I~~~~~~~-~~~cP~~~~~l~~ 286 (732)
.+-.|=||.+-.. +..-||.. -.=++|+++|+..+ ...||.|++++.-
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4557888887643 44456543 23689999999854 5689999998743
No 389
>PLN03205 ATR interacting protein; Provisional
Probab=37.28 E-value=3.9e+02 Score=29.53 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=91.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh---cCCHHHHHHhhc-----cCCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN---CGAIPPLLSLLY-----SEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~---~G~I~~Lv~lL~-----s~~~~v~~~A~~~L~nLs 515 (732)
+.+++.|+.+.+-++..+.-.+++.|..+..+--.++..+-. .+++. |..++. +....++..|+.+..-+.
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 456677888878888777888888777766543333333221 23332 333332 345567777777665444
Q ss_pred c--CCc-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccC-------------------chhHH--HH---Hh
Q 004761 516 I--NDE-NKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVL-------------------EEYKA--KI---GR 567 (732)
Q Consensus 516 ~--~~~-~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~-------------------~~~k~--~i---~~ 567 (732)
. +.. .|+.+....+++.+.++|+.+. ..++..|.-.|+-|... .+++. .- +-
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHH
Confidence 3 322 3677777788999999998754 56777777777654211 11111 01 11
Q ss_pred cchHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCc
Q 004761 568 SGAVKALVDLLGSG-----TLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 568 ~g~i~~Lv~lL~~~-----~~~~~~~Al~aL~nLs~~~ 600 (732)
..++..|.+.+... +.+..+.|+..|..+++..
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSG 518 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSG 518 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcC
Confidence 12455666666542 4566777888888777644
No 390
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.11 E-value=17 Score=40.54 Aligned_cols=67 Identities=21% Similarity=0.434 Sum_probs=49.9
Q ss_pred CCCCCccccccC-cccCCCceec--CCCcccchHHHHHHHhcC-CCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004761 234 VPIPPYFRCPLS-LELMIDPVIV--ASGQTYERVFIQKWLDHG-LNICPKTRQTLAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 234 ~~~p~~f~Cpi~-~~lm~dPV~~--~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 302 (732)
...|++..||+| .+.|.|-+.+ .|+.+||-.||.+.+..+ ...|+.|. .....+.|+..++..+..-
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~--~~~~~~~~p~~~r~~~n~~ 284 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASN--VLADDLLPPKTLRDTINRI 284 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhc--ccccccCCchhhHHHHHHH
Confidence 457999999999 9999999988 589999999999998754 23344443 2244667777776666544
No 391
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=36.60 E-value=4.5e+02 Score=30.90 Aligned_cols=138 Identities=22% Similarity=0.169 Sum_probs=69.3
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHhhcC----CCHHHHHHHHHHHHHhcc----
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDLLGS----GTLRGRKDAATALFNLSI---- 598 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~Al~aL~nLs~---- 598 (732)
++..+..++.++.... ..|+.+|..|.... ... ..+..+..|++. .++.....|+.++..|..
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4556667776654222 23445555554321 111 244556666654 345566667777776643
Q ss_pred Cc------hhHHHHHhhchHHHHHHhc-----CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC---CH
Q 004761 599 FH------ENKARIIQAGAVKHLVDLM-----DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG---SQ 664 (732)
Q Consensus 599 ~~------~n~~~lv~~G~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~---s~ 664 (732)
.. ..+...+....++.+...+ ..+..-...++.+|+|+-. ...++.+..++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 1112223344555555555 2344555667777777632 13567777776554 56
Q ss_pred HHHHHHHHHHHHHhcCChH
Q 004761 665 RGKENAASILLQLCLHSPK 683 (732)
Q Consensus 665 ~~~e~A~~~L~~L~~~~~~ 683 (732)
..+-.|+++|..+....++
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~ 557 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPE 557 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HH
T ss_pred HHHHHHHHHHHHHhhcCcH
Confidence 6777788888776555443
No 392
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=36.47 E-value=18 Score=37.93 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=19.7
Q ss_pred ccccccCcccCC--Cc-eecCCCcccchHH
Q 004761 239 YFRCPLSLELMI--DP-VIVASGQTYERVF 265 (732)
Q Consensus 239 ~f~Cpi~~~lm~--dP-V~~~~g~ty~r~~ 265 (732)
.|.||+|...|. +. +.=+.||+||..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999995 33 3335689998764
No 393
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=36.04 E-value=3.3e+02 Score=28.64 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=50.1
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHH----Hhhc--------cCCHHHHHHHHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENR-MIIGNCGAIPPLL----SLLY--------SEAQLTQEHAVTA 510 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r-~~i~~~G~I~~Lv----~lL~--------s~~~~v~~~A~~~ 510 (732)
...++.++..+...+++.+..++..|..+....+... ..+...|....+- .+|. .....+...|..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4567899999999999999999999999987654333 3355667555443 3333 2335567777777
Q ss_pred HHHhh
Q 004761 511 LLNLS 515 (732)
Q Consensus 511 L~nLs 515 (732)
|..|.
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 77763
No 394
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=35.90 E-value=23 Score=35.15 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=34.8
Q ss_pred cccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
..|.+|..|.---+.- .||..|-+.||++++++ .+.||.|+--.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 4599999986544432 57788999999999998 589999986443
No 395
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=35.73 E-value=1.3e+02 Score=35.55 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=107.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...++.|++++++.+..+|..-+.-+-....+- ...+.+.-.+|.+..-+.+.++.+++.++..+.-|+.--..+
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 457888999999988877766555554444321 223455667888888888899999999999887775321111
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcch-HHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGA-VKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~-i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
......++.+..+-.+....+|-+..-+|..++.+..... +.++ +.+...-+++.-...+++++.++.....+-++
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 1111122333332223345677777777777665422111 2222 23333445666667788888888877765544
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHH
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLA 634 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~ 634 (732)
.. +...++|.+..+. +++..+...|...+.
T Consensus 481 ~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 481 SE--VANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred hh--hhhhccccccccccCcccchhhHHHHHHH
Confidence 33 3344667777776 666666655554443
No 396
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=35.26 E-value=1.8e+02 Score=31.37 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhhc--hHHHHHHhc----CCChHHHHHHHHHHHHHhCChhhHHHHHH-------cCc
Q 004761 585 GRKDAATALFNLSIFHENKARIIQAG--AVKHLVDLM----DPSTGMVDKAVALLANLSTVGEGRLAIAR-------EGG 651 (732)
Q Consensus 585 ~~~~Al~aL~nLs~~~~n~~~lv~~G--~V~~Ll~lL----~~~~~l~e~al~iL~nLa~~~~~r~~i~~-------~~~ 651 (732)
++-.|+.++.++...+....++...+ .+..|++++ .-...++..|+.+|..++........+.. +|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 44556666666666677777888776 999999999 22567788899999999886543333332 455
Q ss_pred HHHHHHH
Q 004761 652 IPSLVEV 658 (732)
Q Consensus 652 I~~Lv~l 658 (732)
++.+++.
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 6666554
No 397
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.23 E-value=32 Score=28.54 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=22.5
Q ss_pred cccccCccc-----CCCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 240 FRCPLSLEL-----MIDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 240 f~Cpi~~~l-----m~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
-.|.||++= =-+|.+. .||.-.||.|.+-=.++|+..||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 358888753 2345454 3788889999998899999999999987754
No 398
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=34.86 E-value=1.2e+03 Score=30.76 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=78.2
Q ss_pred cCCHHHHHHH----HcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 527 AGAIEPLIHV----LKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 527 ~g~l~~Lv~l----L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
.+.++.++.+ |.+.++.++..+......+-..-+ ......++..|+..+-+++......|+.+|..|+...
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~-- 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN-- 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc--
Confidence 4566666654 556667777666655554433221 1223346788888887788777889999999998643
Q ss_pred HHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHH-HHhcCCHHHHH----HHHHHHH
Q 004761 603 KARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE-VVESGSQRGKE----NAASILL 675 (732)
Q Consensus 603 ~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~-lL~~~s~~~~e----~A~~~L~ 675 (732)
...+.. +..+..+++.+ .-+..-......+|..|+........-++ +-+..+++ .|.+.++..+. .|+..+.
T Consensus 505 ~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~-del~ivIRKQLss~~~~~K~~GIIGav~~i~ 583 (1426)
T PF14631_consen 505 PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQ-DELHIVIRKQLSSSNPKYKRIGIIGAVMMIK 583 (1426)
T ss_dssp HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHH-HHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhH-HHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Confidence 223333 45556666666 33344466778888888753311111111 12444444 45555554433 3444444
Q ss_pred HHhc
Q 004761 676 QLCL 679 (732)
Q Consensus 676 ~L~~ 679 (732)
.|+.
T Consensus 584 ~la~ 587 (1426)
T PF14631_consen 584 HLAA 587 (1426)
T ss_dssp HTT-
T ss_pred HHHH
Confidence 4444
No 399
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.84 E-value=7.9e+02 Score=28.61 Aligned_cols=202 Identities=17% Similarity=0.084 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH----HHHHhcC---CHHHHHHhhccCCHHH--HHHHHHHHHHhhcC
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENR----MIIGNCG---AIPPLLSLLYSEAQLT--QEHAVTALLNLSIN 517 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r----~~i~~~G---~I~~Lv~lL~s~~~~v--~~~A~~~L~nLs~~ 517 (732)
+-.|++.|+.-+.+........+.. .. ...| +.+...| ++..+...+.+..... ...++..+......
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~ 389 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARY 389 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc
Confidence 4556666666555544444444433 11 2233 3334445 4555666666544221 12222222222111
Q ss_pred CchHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHhcc----CchhHHHHHhcchHHHHHHhhc----CCCHHH
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSG----NGGAKENSAAALFSLSV----LEEYKAKIGRSGAVKALVDLLG----SGTLRG 585 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~i~~Lv~lL~----~~~~~~ 585 (732)
+ .. ..++.+..+++++ ...++..|.-++.+|.. .............++.|...|. .++...
T Consensus 390 P-t~------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 390 P-TE------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred C-CH------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 1 11 2355566666653 34455555555555532 2211111112235666666554 344555
Q ss_pred HHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc----CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHh
Q 004761 586 RKDAATALFNLSIFHENKARIIQAGAVKHLVDLM----DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL----~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~ 660 (732)
+..+++||.|+.... .++.+..++ ..+..++..|+.+|..++. ++. ..-+.+..++.
T Consensus 463 ~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~ 524 (574)
T smart00638 463 IQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYL 524 (574)
T ss_pred eeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHc
Confidence 677888888875432 444555555 2245677888888887764 221 13445556554
Q ss_pred c--CCHHHHHHHHHHHHH
Q 004761 661 S--GSQRGKENAASILLQ 676 (732)
Q Consensus 661 ~--~s~~~~e~A~~~L~~ 676 (732)
+ .+++.|-.|+.+|..
T Consensus 525 n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 525 NRAEPPEVRMAAVLVLME 542 (574)
T ss_pred CCCCChHHHHHHHHHHHh
Confidence 4 356677666655544
No 400
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.51 E-value=5.6e+02 Score=26.77 Aligned_cols=214 Identities=15% Similarity=0.122 Sum_probs=118.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcc----ChhhHHHHHh------c-CCHHHHHHhhcc--CCHHHHHHHHHHHHHh
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKH----NMENRMIIGN------C-GAIPPLLSLLYS--EAQLTQEHAVTALLNL 514 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~----~~~~r~~i~~------~-G~I~~Lv~lL~s--~~~~v~~~A~~~L~nL 514 (732)
..-+..|.+.++.+-..|+..|..+-.. ++..+.++.+ . |..+-|..++-. ..+...+.++.+|..|
T Consensus 10 W~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L 89 (262)
T PF14225_consen 10 WTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRL 89 (262)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHH
Confidence 3455666676666667777766665432 2334443332 1 444444444422 1334556677777776
Q ss_pred hcC--------CchHHHHHHcCCHHHHHHHHcCCC----HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC-
Q 004761 515 SIN--------DENKAMIAEAGAIEPLIHVLKSGN----GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG- 581 (732)
Q Consensus 515 s~~--------~~~k~~i~~~g~l~~Lv~lL~~~~----~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~- 581 (732)
... .+++-.+.-.+.+|.++.-+.+++ ......+|..|..++.... .+.+..++.....+
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~ 162 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGR 162 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcC
Confidence 532 123444444566888888887776 1344566667776663111 11222222222222
Q ss_pred ---CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHH
Q 004761 582 ---TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE 657 (732)
Q Consensus 582 ---~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~ 657 (732)
..+-...++..|..-.. ++ ....++..|+++| .+...++...+.+|..+-...+.+.. ...+.+..+.+
T Consensus 163 fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllr 235 (262)
T PF14225_consen 163 FRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLR 235 (262)
T ss_pred CCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHH
Confidence 23344445555543221 11 2234666788888 66778899999999999776655543 33446899999
Q ss_pred HHhcCCHHHHHHHHHHHHHHh
Q 004761 658 VVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 658 lL~~~s~~~~e~A~~~L~~L~ 678 (732)
+++++- ...|..+|-..-
T Consensus 236 lL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 236 LLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HhCCcc---HHHHHHHHHHHH
Confidence 997643 445666665443
No 401
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=34.10 E-value=3.4e+02 Score=31.94 Aligned_cols=74 Identities=22% Similarity=0.143 Sum_probs=41.1
Q ss_pred CHHHHHHHHc----CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC---CHHHHHHHHHHHHHhccCch
Q 004761 529 AIEPLIHVLK----SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG---TLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 529 ~l~~Lv~lL~----~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~---~~~~~~~Al~aL~nLs~~~~ 601 (732)
.++.+...|. .++.+.+..++.+|.|+-. ...++.|..++... +...+..|+.||..+.....
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 4445554443 3455666666777766532 23667777777655 45667777777776644332
Q ss_pred hHHHHHhhchHHHHHHhc
Q 004761 602 NKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL 619 (732)
.. +.+.|+.++
T Consensus 557 ~~-------v~~~l~~I~ 567 (618)
T PF01347_consen 557 EK-------VREILLPIF 567 (618)
T ss_dssp HH-------HHHHHHHHH
T ss_pred HH-------HHHHHHHHh
Confidence 22 344556665
No 402
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=33.96 E-value=2.6e+02 Score=30.50 Aligned_cols=140 Identities=14% Similarity=0.055 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc------C-CHHHHHHHHHHHHHhhcCCc
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS------E-AQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s------~-~~~v~~~A~~~L~nLs~~~~ 519 (732)
...+.+.+.+.+...+..|+..|+.=..- ...+|.++.++.. . +.......+.++..|..++.
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~tD~gl----------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRTDPGL----------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCCCc----------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 34556666566666666665554332211 1356677777643 2 45556666666666666654
Q ss_pred hHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC-C-HHHHH
Q 004761 520 NKAMIAEAGAIEPLIHVLKS----------GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG-T-LRGRK 587 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~----------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~-~~~~~ 587 (732)
-....--...++.++.++-. ....+|..|+.+|..++..-.+...-....++..|.+.+.+. . .....
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 33222222356666655521 225799999999998874211111111222344555554433 2 22345
Q ss_pred HHHHHHHHh
Q 004761 588 DAATALFNL 596 (732)
Q Consensus 588 ~Al~aL~nL 596 (732)
-|+..|..|
T Consensus 330 GAi~GL~~l 338 (343)
T cd08050 330 GAIVGLSAL 338 (343)
T ss_pred HHHHHHHHh
Confidence 555555544
No 403
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.53 E-value=20 Score=27.30 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=11.4
Q ss_pred CCCCccccccCcc
Q 004761 235 PIPPYFRCPLSLE 247 (732)
Q Consensus 235 ~~p~~f~Cpi~~~ 247 (732)
.+|++|.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 404
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=33.43 E-value=20 Score=35.85 Aligned_cols=26 Identities=27% Similarity=0.691 Sum_probs=21.2
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
.|.||+|+.++..|+ ..||.|...++
T Consensus 260 GfvCsVCLsvfc~p~---------------------~~C~~C~skF~ 285 (296)
T COG5242 260 GFVCSVCLSVFCRPV---------------------PVCKKCKSKFS 285 (296)
T ss_pred eeehhhhheeecCCc---------------------CcCcccccccc
Confidence 689999999998885 56888877664
No 405
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=32.72 E-value=2.5e+02 Score=23.84 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhCCC
Q 004761 30 IQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVL---NKECEELDMVVNEAREFMENWSPK 86 (732)
Q Consensus 30 ~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~---~~~l~~L~~al~~ak~Ll~~c~~~ 86 (732)
.+.|=..|+.+++-..||++.|...+ -++.+- +.+...=..-+++...+++.|.+.
T Consensus 3 l~~hRe~LV~rI~~v~plLD~Ll~n~-~it~E~y~~V~a~~T~qdkmRkLld~v~akG~~ 61 (85)
T cd08324 3 LKSNRELLVTHIRNTQCLVDNLLKND-YFSTEDAEIVCACPTQPDKVRKILDLVQSKGEE 61 (85)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccC-CccHHHHHHHHhCCCCHHHHHHHHHHHHhcCch
Confidence 46677789999999999999998776 333332 222222233445555555556554
No 406
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=32.48 E-value=1.1e+03 Score=29.61 Aligned_cols=176 Identities=17% Similarity=0.229 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhhcccccccch-HHHHHHHHHHHhhhhhHHHHH----hhCCC--------CC----------cHHHHH
Q 004761 8 CLINSISRFIHLVSCQTIKLKPI-QKDYKTMAGALKLLKPLLDEV----VDYKI--------PL----------DEVLNK 64 (732)
Q Consensus 8 ~l~~~~~~~~~~i~~~~~~~~~~-~k~~~~l~r~l~lL~~lleEl----~~~~~--------~~----------~~~~~~ 64 (732)
..+..|+.+.+.++....+.-+. +|||-+ +-+.|+|||- ++.+. .+ +.++.
T Consensus 938 p~~~~ifdl~~~~s~~~~s~is~~yKnFLn-----e~ViPvLEeCl~aL~~nn~~~L~kaLA~FP~d~qWSaFNs~EA~- 1011 (1439)
T PF12252_consen 938 PDLEGIFDLQHRFSGVEDSKISQEYKNFLN-----EKVIPVLEECLNALRENNMDMLQKALAAFPSDKQWSAFNSEEAR- 1011 (1439)
T ss_pred chHHhHHHHHHHhhhhhhccccHHHHHHHH-----hccHHHHHHHHHHHHhcCHHHHHHHHHhCCCcccchhcCcHHHH-
Confidence 45677778888887655443333 666543 2345555552 33221 11 11222
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhHH--HhcchHHHHHHHHHHHHHHHHHHhhcccCC--CCChhh--HHHHHHHHHh
Q 004761 65 ECEELDMVVNEAREFMENWSPKMSKIFS--VLHSEPLMMKIQSSSLEICHILYRLLQSSP--SNSSMS--AVQHCMQEIH 138 (732)
Q Consensus 65 ~l~~L~~al~~ak~Ll~~c~~~~Sklyl--l~~~~~i~~~f~~~~~~i~~~L~~lp~~~~--~~s~e~--~~~~~~~~~~ 138 (732)
.-...|+..|.+++. |+.| +++|+.-+.+ |.+...+ ++|..||-..= .|+.+. ||..+.|++.
T Consensus 1012 ---~AK~QMDaIKqmIek------Kv~L~~L~qCqdALeK-qnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~Le 1080 (1439)
T PF12252_consen 1012 ---QAKAQMDAIKQMIEK------KVVLQALTQCQDALEK-QNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLE 1080 (1439)
T ss_pred ---HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh-hhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHH
Confidence 235567778888872 4443 4445444433 3333332 45666665421 155555 7777777654
Q ss_pred hhHH----------HHHHHHHHHHH-------HccCCCCcCchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 004761 139 CLKQ----------ERIMEHITKAM-------RGLQDDTIRCTDHLVKIIESLGLTSNQELLKESLAVEMERIRAERNQN 201 (732)
Q Consensus 139 ~~~~----------~~~~~~i~~~l-------~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~ 201 (732)
.... +..+.....++ ...+...-.+.+..++....+ ..|.+|+..|++|+-+.....
T Consensus 1081 sLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~l-----nnlqqElklLRnEK~Rmh~~~- 1154 (1439)
T PF12252_consen 1081 SLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANL-----NNLQQELKLLRNEKIRMHSGT- 1154 (1439)
T ss_pred HHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH-----HHHHHHHHHHHhHHHhhccCC-
Confidence 4321 22222222122 222222223444444433333 357788888888776553333
Q ss_pred CCCcch
Q 004761 202 KGHSDQ 207 (732)
Q Consensus 202 ~~~~~~ 207 (732)
...++
T Consensus 1155 -dkVDF 1159 (1439)
T PF12252_consen 1155 -DKVDF 1159 (1439)
T ss_pred -CcccH
Confidence 33454
No 407
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=32.14 E-value=9.8e+02 Score=30.73 Aligned_cols=229 Identities=18% Similarity=0.110 Sum_probs=116.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHHHHHh-hc------cC--CHHHHHHHHHHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME--NRMIIGNCGAIPPLLSL-LY------SE--AQLTQEHAVTALL 512 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~i~~~G~I~~Lv~l-L~------s~--~~~v~~~A~~~L~ 512 (732)
.+.++.|+..+-++.+++|..+.-.++.+.+.... ++.. .+.-++..+.-+ |. ++ -..+++.++++|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~-led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYEL-LEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHH-HHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 56678899999999999999888888888754321 2211 121122222111 10 11 1356788888887
Q ss_pred HhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH--hcchHHHHHHhhcCCCHHHHHHHH
Q 004761 513 NLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG--RSGAVKALVDLLGSGTLRGRKDAA 590 (732)
Q Consensus 513 nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~~~~~Al 590 (732)
.+-.+..... ....++.+..++.....+++.-.+..+.+.-. -....+. -.-+++..++.|.+.+..++..|+
T Consensus 155 ~~l~~~~~s~---~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a--ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 155 AYLKHMDESL---IKETLDILLQMLRQPNWEIRHGGLLGIKYNVA--IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHHhhhhHh---hHHHHHHHHHHHcCcchhheechHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 6654421111 11235556666665544444332222222111 0011111 113556667777777777777777
Q ss_pred HHHHHhccCch--hHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHH----HHcCcHHHHHHHHhc
Q 004761 591 TALFNLSIFHE--NKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAI----AREGGIPSLVEVVES 661 (732)
Q Consensus 591 ~aL~nLs~~~~--n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i----~~~~~I~~Lv~lL~~ 661 (732)
.++.-....-. ....| .-+|..+..++ +.-..-.......|..++...+...-. .+.|.+|.+.-.+++
T Consensus 230 ~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 77765544321 11122 22444444443 111111222334445555554322111 123557777777777
Q ss_pred CCHHHHHHHHHHHHHHhcC
Q 004761 662 GSQRGKENAASILLQLCLH 680 (732)
Q Consensus 662 ~s~~~~e~A~~~L~~L~~~ 680 (732)
.=..++..++..+..|...
T Consensus 308 ~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 308 TISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6566777777777777663
No 408
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=31.74 E-value=8.1e+02 Score=27.81 Aligned_cols=245 Identities=15% Similarity=0.119 Sum_probs=112.1
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 447 VKKLIEDLNS--TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 447 i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
|..+.+.|-. ...+.+..++..+..+.+..... ..... ..+...+. ...++....-+.+|..|+.+...- .
T Consensus 29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~ 102 (464)
T PF11864_consen 29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D 102 (464)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h
Confidence 4555555533 24577888888888888765321 00011 01122222 233333344455555565443332 2
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC---chhHH--HH-Hhc----chHHHHHHhhcCC----CHHHHHHH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL---EEYKA--KI-GRS----GAVKALVDLLGSG----TLRGRKDA 589 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~--~i-~~~----g~i~~Lv~lL~~~----~~~~~~~A 589 (732)
..+.+..+.|...|..-. .++..-...+.. ...+. .+ .+. ..+..++++++-+ +.......
T Consensus 103 ~~~~~i~~~L~~wl~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~l 177 (464)
T PF11864_consen 103 FFEYEIGPFLLSWLEPSY-----QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSL 177 (464)
T ss_pred hcccchHHHHHHHHHHHH-----HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 346667777777774211 111111111100 00000 00 011 2344444444432 23444444
Q ss_pred HHHHHHhccCchhHH----------HHHhhc-----hHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCc
Q 004761 590 ATALFNLSIFHENKA----------RIIQAG-----AVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGG 651 (732)
Q Consensus 590 l~aL~nLs~~~~n~~----------~lv~~G-----~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~ 651 (732)
+..+..+|....+.. .++..| .++.++..| .....+...+-.++.||+...-|.. +
T Consensus 178 v~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~------~ 251 (464)
T PF11864_consen 178 VDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS------A 251 (464)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH------H
Confidence 444555543322111 122222 223344444 1222455667777777777655433 3
Q ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHHHhcCChHhHHHHHh-CC--CHHHHHHchhcCChHH
Q 004761 652 IPSLVEVVESG------SQRGKENAASILLQLCLHSPKFCTLVLQ-EG--AVPPLVGLSQSGTPRA 708 (732)
Q Consensus 652 I~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~~~~~~~~v~~-~G--~i~~L~~Ll~~g~~~~ 708 (732)
+..|..+|... +......|+.+|..+..+.++....-+. .- +++.|...++.+++++
T Consensus 252 i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v 317 (464)
T PF11864_consen 252 IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRV 317 (464)
T ss_pred HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCee
Confidence 55667777322 2334456777777666654222221222 22 6777888888776654
No 409
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=31.55 E-value=1.1e+02 Score=26.64 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCcch
Q 004761 28 KPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSK 89 (732)
Q Consensus 28 ~~~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~~Sk 89 (732)
...++|=..|++++.-..|+++.+...+ -+++.-......-...-++|+.|+..-..+|++
T Consensus 9 ~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~-Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~ 69 (94)
T cd08329 9 SLIRKNRMALFQHLTSVLPILDSLLSAN-VITEQEYDVIKQKTQTPLQARELIDTVLVKGNA 69 (94)
T ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHcCCChHHHHHHHHHHHHhhhHH
Confidence 4568999999999988999999999887 556665666665555569999999876655433
No 410
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=31.45 E-value=2.2e+02 Score=30.74 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCC---CHHHHHHHHHHHHHhccCchhHHHHHh-------hc
Q 004761 543 GAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSG---TLRGRKDAATALFNLSIFHENKARIIQ-------AG 610 (732)
Q Consensus 543 e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~---~~~~~~~Al~aL~nLs~~~~n~~~lv~-------~G 610 (732)
.+|..|.+++.++.........+... ..+..|+++++.+ ...++..|+.+|..|+....-...++. .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 35667777787777666666666655 4999999999865 367888999999999886643333332 45
Q ss_pred hHHHHHH
Q 004761 611 AVKHLVD 617 (732)
Q Consensus 611 ~V~~Ll~ 617 (732)
++..+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5555544
No 411
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.38 E-value=44 Score=36.99 Aligned_cols=70 Identities=14% Similarity=0.300 Sum_probs=42.8
Q ss_pred ccccccCc-ccCCCc---eecCCCcccchHHHHHHHhc-----CCCCCCCC--CCCCCCC---CCcccHHHHHHHHHHHH
Q 004761 239 YFRCPLSL-ELMIDP---VIVASGQTYERVFIQKWLDH-----GLNICPKT--RQTLAHT---NLIPNYTVKAMIENWCE 304 (732)
Q Consensus 239 ~f~Cpi~~-~lm~dP---V~~~~g~ty~r~~I~~~~~~-----~~~~cP~~--~~~l~~~---~l~pn~~l~~~i~~~~~ 304 (732)
...|+||. +.+.-. .+..|||-||..|..+++.. ....||.- ...++.. .+.|+ .++...++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 56799999 433221 24679999999999999972 23457643 3334432 34444 56666665555
Q ss_pred HcCCC
Q 004761 305 ENNLR 309 (732)
Q Consensus 305 ~~~~~ 309 (732)
+.-++
T Consensus 225 e~~i~ 229 (384)
T KOG1812|consen 225 EEVIP 229 (384)
T ss_pred HHhhh
Confidence 55443
No 412
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.33 E-value=2e+02 Score=34.00 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh------hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh--
Q 004761 571 VKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ------AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-- 641 (732)
Q Consensus 571 i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~------~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-- 641 (732)
..-++.+|.+.+-..+-.-+.++.|+..+-....++++ +..+..|.+-| +..+-.+.+|+.++..++.-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 45667888888777676777788888765433334544 23444455555 7788899999999999876432
Q ss_pred --hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 642 --GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 642 --~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
.|.+ .+...+.-++..+.-++.+|+..+..|-..
T Consensus 381 ~~~r~e-----v~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRHE-----VIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 2333 344556667777778899999888777653
No 413
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=31.14 E-value=47 Score=32.08 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=20.1
Q ss_pred hHHHHHH---HhcCCCCCCCCCCCCCCC-CCcc
Q 004761 263 RVFIQKW---LDHGLNICPKTRQTLAHT-NLIP 291 (732)
Q Consensus 263 r~~I~~~---~~~~~~~cP~~~~~l~~~-~l~p 291 (732)
|...++. ...|.+.||.|++|+... ++.|
T Consensus 142 Rafa~Ra~~VVaAGRP~CPlCg~PldP~GH~Cp 174 (177)
T TIGR03847 142 RAFAKRARRVVAAGRPPCPLCGRPIDPDGHICP 174 (177)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCCccCC
Confidence 4444443 357889999999999753 4544
No 414
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=30.95 E-value=22 Score=33.55 Aligned_cols=23 Identities=30% Similarity=0.800 Sum_probs=17.2
Q ss_pred CCCcccchHHHHHHHhc----------CCCCCCCCCCC
Q 004761 256 ASGQTYERVFIQKWLDH----------GLNICPKTRQT 283 (732)
Q Consensus 256 ~~g~ty~r~~I~~~~~~----------~~~~cP~~~~~ 283 (732)
.+||+| +-||.+ |.-+||+||..
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCC
Confidence 368999 468852 55689999975
No 415
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.75 E-value=51 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=29.5
Q ss_pred ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHH
Q 004761 254 IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295 (732)
Q Consensus 254 ~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l 295 (732)
|-.--+|||..|-+.-|. ..||.||-.|......|.-.|
T Consensus 24 ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 24 ICTFECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 434468999999887763 589999998887777775433
No 416
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=30.30 E-value=2.3e+02 Score=23.80 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004761 29 PIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPK 86 (732)
Q Consensus 29 ~~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~ 86 (732)
++++|=..|+.++.-+.|+++.|...+ -+++........-..--++|+.|+...-.+
T Consensus 2 fv~~~r~~Li~~v~~v~~ilD~L~~~~-Vit~e~~~~I~a~~T~~~kar~Lld~l~~k 58 (82)
T cd08330 2 FVDQHREALIARVTNVDPILDKLHGKK-VITQEQYSEVRAEKTNQEKMRKLFSFVRSW 58 (82)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHCC-CCCHHHHHHHHcCCCcHHHHHHHHHHHHcc
Confidence 357788889999999999999999776 556666655555555567888887765444
No 417
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=30.20 E-value=8.2e+02 Score=31.95 Aligned_cols=104 Identities=11% Similarity=0.148 Sum_probs=46.1
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh-ccCchhHHHHH
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARII 607 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL-s~~~~n~~~lv 607 (732)
++..++.+|......+|..|+.+|..+...+.. .+....+-..+-.-+.+....++++|+-.+..- ..+++...+..
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY 894 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYY 894 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 344455555544555666666666555443221 111111112222223334455555555555422 22222222211
Q ss_pred hhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 004761 608 QAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 608 ~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~ 639 (732)
+ .+.+-+ +..-.++..++.+|.-+|..
T Consensus 895 ~-----~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 895 D-----QIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred H-----HHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 1 222222 45556677777777777753
No 418
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=30.09 E-value=7.8e+02 Score=27.11 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=74.9
Q ss_pred chHHHHHHhhcCCC-HHHHHHHHHHHHHhccCchhHH-HHHhhchHHHHHHhc--C--CChHHHHHHHHHHHHHhCChhh
Q 004761 569 GAVKALVDLLGSGT-LRGRKDAATALFNLSIFHENKA-RIIQAGAVKHLVDLM--D--PSTGMVDKAVALLANLSTVGEG 642 (732)
Q Consensus 569 g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~n~~-~lv~~G~V~~Ll~lL--~--~~~~l~e~al~iL~nLa~~~~~ 642 (732)
.-.+.+-.-+...+ ..-+.+|+..|..|+...+... .++ .+.+..++.-. + .+..-.+.|+.++..|+.....
T Consensus 210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 33344443343222 4456788889989986433221 121 23333333322 2 3445678899999999875432
Q ss_pred H----H---------HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHH
Q 004761 643 R----L---------AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 643 r----~---------~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
. . .+.....+|-|. --.+..|-.+..|+..+..+-..-+. ..+ .+++|.|+..+++++.-+.
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~~~vv~ 363 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSSSYVVH 363 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS-HHHH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCCCcchh
Confidence 1 1 111111122221 00134566788888888877664222 222 2479999999999998888
Q ss_pred HHHHHHH
Q 004761 710 EKAQQLL 716 (732)
Q Consensus 710 ~kA~~lL 716 (732)
..|+.++
T Consensus 364 tyAA~~i 370 (370)
T PF08506_consen 364 TYAAIAI 370 (370)
T ss_dssp HHHHHHH
T ss_pred hhhhhhC
Confidence 8887654
No 419
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=29.80 E-value=23 Score=26.60 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=8.4
Q ss_pred CCCCccccccCcc
Q 004761 235 PIPPYFRCPLSLE 247 (732)
Q Consensus 235 ~~p~~f~Cpi~~~ 247 (732)
.+|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999974
No 420
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=29.31 E-value=8.4e+02 Score=27.25 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=101.8
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHHhccCchhHH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIFHENKA 604 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~n~~ 604 (732)
++|--..+-.+|..-+. .+|+..-|..+.. +++..++ ..++.+|..+- +..+...+.++.-|+.....-.
T Consensus 11 ~age~~~I~e~l~~~n~---k~aa~~kFd~a~~-d~r~eL~-----e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~ 81 (532)
T KOG4464|consen 11 EAGEADKIEEFLRKYNF---KHAAVFKFDSANS-DDRKELG-----ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLE 81 (532)
T ss_pred hcCCchhHHHHHHHhhh---hhhhhhcccccch-hhHHHHH-----HHHHHHHhcCCCchhhhhHHHHHHHHhccccccc
Confidence 34444444445543322 2444444443332 2344443 45566666664 3445566677777776554333
Q ss_pred HHHhhchHHHHHHhc-----------CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhc-----CCHHHH
Q 004761 605 RIIQAGAVKHLVDLM-----------DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVES-----GSQRGK 667 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-----------~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~-----~s~~~~ 667 (732)
-+.....++.|+.+- ..+..+...++.+|.|+..++. .|....+......+.+.+.. .-...+
T Consensus 82 ~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~ 161 (532)
T KOG4464|consen 82 PLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSS 161 (532)
T ss_pred cccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccch
Confidence 333333344444442 1244678899999999988664 56666666555555555422 111223
Q ss_pred HHHHHHHHHHhcCChHhHH-HHHhCCCHHHHHHchhcC---------Ch---HHHHHHHHHHHHhhc
Q 004761 668 ENAASILLQLCLHSPKFCT-LVLQEGAVPPLVGLSQSG---------TP---RAKEKAQQLLSHFRN 721 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~-~v~~~G~i~~L~~Ll~~g---------~~---~~k~kA~~lL~~l~~ 721 (732)
-.=+..|.-+..-.+..+. .+.+.++++.+...+... .+ .--..|.++|+.|=+
T Consensus 162 ~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FN 228 (532)
T KOG4464|consen 162 IFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFN 228 (532)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 3344555555554444444 455678889888888642 12 445678888887744
No 421
>PRK14707 hypothetical protein; Provisional
Probab=29.23 E-value=1.7e+03 Score=30.69 Aligned_cols=232 Identities=17% Similarity=0.082 Sum_probs=102.8
Q ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHH-hhcCCchHHH
Q 004761 446 YVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLN-LSINDENKAM 523 (732)
Q Consensus 446 ~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~n-Ls~~~~~k~~ 523 (732)
.+...+.-|+. ++......|+..|..-.-.+++-+..+-..|.-..|-.+-+-++..+...++..|.- ++.+.+.+..
T Consensus 374 ~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~ 453 (2710)
T PRK14707 374 GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKA 453 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhh
Confidence 34555555543 344566677777766555667777766655544444444455777777777766643 4444444443
Q ss_pred HHHcCCHHHHHHHHc-CCCHHHHHHHHHHH-HHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH-HHhccCc
Q 004761 524 IAEAGAIEPLIHVLK-SGNGGAKENSAAAL-FSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL-FNLSIFH 600 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L-~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL-~nLs~~~ 600 (732)
+--.+ +...+..|. =++..+...|+..| ..|+...+.+..+-..++...|-.+=+-.+......|+..| ..+.. +
T Consensus 454 ~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~ 531 (2710)
T PRK14707 454 LDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-E 531 (2710)
T ss_pred cChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-c
Confidence 32222 222333332 23333343444444 33443333333332223333333333333322222222222 22221 1
Q ss_pred hhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 004761 601 ENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQL 677 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L 677 (732)
.........--+..++.-| .++...++.+..-|..+.....+...-.+.-.|..++..|.. ........|+..|...
T Consensus 532 ~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~ 611 (2710)
T PRK14707 532 LQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAER 611 (2710)
T ss_pred hhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHH
Confidence 1112221222222333333 345555666666666554433333333334456777776644 2333333344444333
Q ss_pred hc
Q 004761 678 CL 679 (732)
Q Consensus 678 ~~ 679 (732)
..
T Consensus 612 l~ 613 (2710)
T PRK14707 612 LV 613 (2710)
T ss_pred hc
Confidence 33
No 422
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=28.81 E-value=5.7e+02 Score=25.12 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=65.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCchh------------------HHHHHhc--chHHHHHHhhcCC-CHHHHHHH
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEEY------------------KAKIGRS--GAVKALVDLLGSG-TLRGRKDA 589 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~------------------k~~i~~~--g~i~~Lv~lL~~~-~~~~~~~A 589 (732)
..+.-++.++++.+|..|+.+|..|-..... -..++.. ..-..|+..|..+ +.......
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3344567778899999999999877432110 0111111 2234555566554 57778888
Q ss_pred HHHHHHhccCch-hHHHHHhhchHHHHHHh----c-CCChHHHHHHHHHHHHHhCCh
Q 004761 590 ATALFNLSIFHE-NKARIIQAGAVKHLVDL----M-DPSTGMVDKAVALLANLSTVG 640 (732)
Q Consensus 590 l~aL~nLs~~~~-n~~~lv~~G~V~~Ll~l----L-~~~~~l~e~al~iL~nLa~~~ 640 (732)
+++|..|....+ +|- ..|.++.++.- + +.+.++...++.++..|....
T Consensus 123 lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 899988877543 332 23555444443 4 667788888888888876543
No 423
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.79 E-value=27 Score=36.24 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=21.9
Q ss_pred ccchHHHHHHHh------------cCCCCCCCCCCCCCCC
Q 004761 260 TYERVFIQKWLD------------HGLNICPKTRQTLAHT 287 (732)
Q Consensus 260 ty~r~~I~~~~~------------~~~~~cP~~~~~l~~~ 287 (732)
-.||+|+.+||. +|..+||.||+.++-.
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 467899999984 2567899999987653
No 424
>PLN02400 cellulose synthase
Probab=28.79 E-value=33 Score=42.37 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=37.4
Q ss_pred ccccccCcc-----cCCCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLE-----LMIDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~-----lm~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
.=.|.||++ ..-+|-+. .||.-.||.|.+-=-++|+..||+|+..+.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 337999986 35567765 488889999996656789999999999886
No 425
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.76 E-value=3.8e+02 Score=30.62 Aligned_cols=111 Identities=20% Similarity=0.279 Sum_probs=69.9
Q ss_pred hchHHHHHHhcCCChHHHHHHHHHHHHHhCChhhHHHH----HHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcC---
Q 004761 609 AGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAI----AREGGIPSLVEVVE-SGSQRGKENAASILLQLCLH--- 680 (732)
Q Consensus 609 ~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r~~i----~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~--- 680 (732)
.++|+.+++.+ ..+.+.+-.+.++. +..++++..+ .+.+.|+.|+.+|. ..+...+.+|+.+|..+..-
T Consensus 20 ~~~v~~llkHI-~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 20 PNFVDNLLKHI-DTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred ccHHHHHHHhc-CCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 46777777776 23344444444444 3333344333 45788999999996 35778899999887777542
Q ss_pred C----------hHhHHHHHhCCCHHHHHHchh--cCChHHHHHHHHHHHHhhcc
Q 004761 681 S----------PKFCTLVLQEGAVPPLVGLSQ--SGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 681 ~----------~~~~~~v~~~G~i~~L~~Ll~--~g~~~~k~kA~~lL~~l~~~ 722 (732)
. ......+.....+..|+..+- .+..-+-....-++.++|+.
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 1 123445556677888888777 34445555666688888665
No 426
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=28.76 E-value=8.2e+02 Score=26.94 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=35.1
Q ss_pred CccccccCcccCC--Cce--ecCCCcccchHHHHHHHhc-CCCCCCCCC
Q 004761 238 PYFRCPLSLELMI--DPV--IVASGQTYERVFIQKWLDH-GLNICPKTR 281 (732)
Q Consensus 238 ~~f~Cpi~~~lm~--dPV--~~~~g~ty~r~~I~~~~~~-~~~~cP~~~ 281 (732)
-++.|-.|++.+- |-- -+||.|.|--.|.+.++.. +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4678999998863 222 3799999999999999864 557899997
No 427
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.75 E-value=2.6e+02 Score=24.80 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=49.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHc---hhcC---ChHHHHHHHHHHHHhh
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGL---SQSG---TPRAKEKAQQLLSHFR 720 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~L---l~~g---~~~~k~kA~~lL~~l~ 720 (732)
++..|.+.|.+.++..+..|+.+|-.+..+++ .....+........++.+ -..| +..+|+++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 46667777888899999999999999998754 566666666555555442 1122 4688999998887643
No 428
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=28.67 E-value=1.5e+02 Score=25.06 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHH--hhhhhHHHHHhhCCCCCcHHHHHHHHH-HHHHHHHHHHHHHhhCCCcch
Q 004761 30 IQKDYKTMAGAL--KLLKPLLDEVVDYKIPLDEVLNKECEE-LDMVVNEAREFMENWSPKMSK 89 (732)
Q Consensus 30 ~~k~~~~l~r~l--~lL~~lleEl~~~~~~~~~~~~~~l~~-L~~al~~ak~Ll~~c~~~~Sk 89 (732)
+|++=..+++.+ ..|.+||+.|.+.+ -+...-...+.. -....++|+.|+.+...+|+.
T Consensus 2 ~~~~r~~~i~~l~~~~i~~llD~Ll~~~-Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG~~ 63 (83)
T cd08325 2 LKEKRVKFIESVGKGVINGLLDDLLEKN-VLNEEEMEKIKEENNTIMDKARVLVDSVTEKGQE 63 (83)
T ss_pred ccchHHHHHHHhhHhhHHHHHHHHHHcC-CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHhHH
Confidence 456666777776 68999999999887 455544444443 445789999999998876444
No 429
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=28.50 E-value=67 Score=25.79 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004761 166 HLVKIIESLGLTSNQELLKESLAVEM 191 (732)
Q Consensus 166 ~~~~i~~~~~l~~~~~~~~e~~~l~~ 191 (732)
.+..|++.+|++|...+..-+.+|++
T Consensus 27 t~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 27 TVREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp -HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 78889999999999988777777665
No 430
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=28.16 E-value=29 Score=26.84 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=19.4
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.|.||.|..-+.=|=... |.. -.||.||..|.-
T Consensus 2 ~~~CP~CG~~iev~~~~~-Gei--------------V~Cp~CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEIELENPEL-GEL--------------VICDECGAELEV 34 (54)
T ss_pred ccCCCCCCCEEecCCCcc-CCE--------------EeCCCCCCEEEE
Confidence 378999988443221111 322 269999987743
No 431
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=27.94 E-value=50 Score=24.62 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=18.0
Q ss_pred ceecCCCc-----ccchHHHHHHHh-cCCCCCCCC
Q 004761 252 PVIVASGQ-----TYERVFIQKWLD-HGLNICPKT 280 (732)
Q Consensus 252 PV~~~~g~-----ty~r~~I~~~~~-~~~~~cP~~ 280 (732)
|.+.||+- -.=+.|+++|+. .+..+|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67777642 345889999997 455678876
No 432
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=27.90 E-value=51 Score=31.84 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.2
Q ss_pred hcCCCCCCCCCCCCCCC
Q 004761 271 DHGLNICPKTRQTLAHT 287 (732)
Q Consensus 271 ~~~~~~cP~~~~~l~~~ 287 (732)
..|++.||.|++|+...
T Consensus 151 aAGRP~CPlCg~PlDP~ 167 (171)
T PF11290_consen 151 AAGRPPCPLCGEPLDPE 167 (171)
T ss_pred hCCCCCCCCCCCCCCCC
Confidence 46889999999998753
No 433
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.89 E-value=31 Score=23.85 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=7.5
Q ss_pred CCCCCCCCC
Q 004761 275 NICPKTRQT 283 (732)
Q Consensus 275 ~~cP~~~~~ 283 (732)
..||.|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 589999875
No 434
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.87 E-value=31 Score=37.33 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCccccccCcccCCCce----ecCCCcccchHHHHHH-HhcCCCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPV----IVASGQTYERVFIQKW-LDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV----~~~~g~ty~r~~I~~~-~~~~~~~cP~~~~~l~~~~ 288 (732)
-.+|.||+...+|.+=- +-.+|..||-.+|++- +...+..+-+|..|++..+
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~D 155 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRAD 155 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhc
Confidence 46899999999998753 2359999999999984 2333333444444444333
No 435
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.05 E-value=19 Score=27.60 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCC
Q 004761 275 NICPKTRQTLAH 286 (732)
Q Consensus 275 ~~cP~~~~~l~~ 286 (732)
..||+|+.+|+.
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 389999988754
No 436
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=26.04 E-value=4.2e+02 Score=28.84 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=57.2
Q ss_pred hHHHHHHhhcCC-------CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-----CC------ChHHHHHHHH
Q 004761 570 AVKALVDLLGSG-------TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-----DP------STGMVDKAVA 631 (732)
Q Consensus 570 ~i~~Lv~lL~~~-------~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-----~~------~~~l~e~al~ 631 (732)
.+|.++.++.++ +.......+..+..|..++.-.-...=.-.+|.++..+ .. +-.+++.|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 345555554432 34445556666666766665443333344777777666 11 2367888999
Q ss_pred HHHHHhCChhhHHHHHHcCcHHHHHHHHhc-C-CHHHHHHHHHHHHHHh
Q 004761 632 LLANLSTVGEGRLAIAREGGIPSLVEVVES-G-SQRGKENAASILLQLC 678 (732)
Q Consensus 632 iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~-s~~~~e~A~~~L~~L~ 678 (732)
+|..+|..-.....-+....+..+.+.+.+ . +.....-|+..|..|.
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 999887531111111111223355554433 2 2233666666666654
No 437
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=25.53 E-value=38 Score=27.12 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=9.4
Q ss_pred ccchHHHHHHHhc
Q 004761 260 TYERVFIQKWLDH 272 (732)
Q Consensus 260 ty~r~~I~~~~~~ 272 (732)
-|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999974
No 438
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.47 E-value=3.8e+02 Score=25.06 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=55.3
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHH-HHHchhc-C--ChHHHHHHHHHHHHhhcccc
Q 004761 651 GIPSLVEVVES-GSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPP-LVGLSQS-G--TPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 651 ~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~-L~~Ll~~-g--~~~~k~kA~~lL~~l~~~~~ 724 (732)
++..|-+.|.. .++.+...|+.+|-.+..+.+ ....++...+.+.- |+.++.. . ...+|.++..+++.....-.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 46677777764 578888889888888777654 56667777788886 8888863 2 34889998888887766544
Q ss_pred C
Q 004761 725 G 725 (732)
Q Consensus 725 ~ 725 (732)
+
T Consensus 119 ~ 119 (141)
T cd03565 119 G 119 (141)
T ss_pred C
Confidence 3
No 439
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=25.26 E-value=81 Score=29.90 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS 703 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~ 703 (732)
|..|+.+|.+.++.....|+.+|.+..- -.+.+..+..+.+.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL----------vyDaf~dv~~~ak~ 137 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL----------VYDAFNDVAELAKA 137 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T----------TCCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH----------HHhhHHHHHHHHHc
Confidence 7888888877667777777777754322 23345556666655
No 440
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=24.97 E-value=74 Score=28.40 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHH
Q 004761 464 SAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAV 508 (732)
Q Consensus 464 ~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~ 508 (732)
.+++.+..|+ ..|+.-..+++.|+++.|+.+|.++|.++...++
T Consensus 65 ~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~vi 108 (108)
T PF08216_consen 65 EEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDIAIDVI 108 (108)
T ss_pred HHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcceehccC
No 441
>PRK07758 hypothetical protein; Provisional
Probab=24.82 E-value=48 Score=28.73 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=20.6
Q ss_pred CCcccchHHHHHHHhcCCCCCCCCCCCCC-CCCCcccHHHH
Q 004761 257 SGQTYERVFIQKWLDHGLNICPKTRQTLA-HTNLIPNYTVK 296 (732)
Q Consensus 257 ~g~ty~r~~I~~~~~~~~~~cP~~~~~l~-~~~l~pn~~l~ 296 (732)
-||+|.++. ..++||.|..... ..++.|-...+
T Consensus 12 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~LSvR 45 (95)
T PRK07758 12 KGHEYYKSS-------DCPTCPTCEKERKPKEGFLSLLSAP 45 (95)
T ss_pred cccceeccC-------CCCCCcccccccCCCCCCCccccHH
Confidence 488885543 5678888876654 34666654443
No 442
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.97 E-value=1.2e+03 Score=27.12 Aligned_cols=98 Identities=13% Similarity=-0.078 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-----------CCChHHHHHHHHHHHHHhCChhhHHHHHHcC
Q 004761 582 TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-----------DPSTGMVDKAVALLANLSTVGEGRLAIAREG 650 (732)
Q Consensus 582 ~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-----------~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~ 650 (732)
+.+.....+..++.|..++.....-.=.-.+|.++..+ +.+..+++-|+.++..+|..-.....-....
T Consensus 260 nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~R 339 (576)
T KOG2549|consen 260 NLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPR 339 (576)
T ss_pred cHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34455556666666666655443333345666666655 1234577888888888876443322223444
Q ss_pred cHHHHHHHHhc--CCHHHHHHHHHHHHHHhc
Q 004761 651 GIPSLVEVVES--GSQRGKENAASILLQLCL 679 (732)
Q Consensus 651 ~I~~Lv~lL~~--~s~~~~e~A~~~L~~L~~ 679 (732)
.+..+.+.+.. .......-|+..|..|..
T Consensus 340 it~tl~k~l~D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 340 ITRTLSKALLDNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHHhhh
Confidence 55666665543 234455566666666655
No 443
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=23.85 E-value=49 Score=26.12 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCC
Q 004761 273 GLNICPKTRQTLAHT 287 (732)
Q Consensus 273 ~~~~cP~~~~~l~~~ 287 (732)
.|+.||.||.+++.+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 467899999987653
No 444
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=23.84 E-value=5e+02 Score=31.21 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=67.3
Q ss_pred cchHHHHHHhhcC--------CCHHHHHHHHHHHHHhcc--C-chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHH
Q 004761 568 SGAVKALVDLLGS--------GTLRGRKDAATALFNLSI--F-HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLAN 635 (732)
Q Consensus 568 ~g~i~~Lv~lL~~--------~~~~~~~~Al~aL~nLs~--~-~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~n 635 (732)
.|.++.++..|.. .+++..+.|++.+.++.. . +.-...+.+.=+++.++..+ +...-++.+|+.++..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4788999998831 246677788888887765 2 22223455556777777777 6666678888988888
Q ss_pred HhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 636 LSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 636 La~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
+.. +-+...+-..+.......+.+.+-.++-.|+-+|-.+..++
T Consensus 487 ~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 487 IEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 732 11111111123344444555555556666666666666543
No 445
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=23.76 E-value=50 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
..+|.-|.||-|.+ ..=||-+ +| ..++..||.|+....
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~------~k-------~~~h~~C~~CG~y~~ 53 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKI------KK-------NIAIITCGNCGLYTE 53 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeec------CC-------CcceEECCCCCCccC
Confidence 45789999999996 2333322 12 146788999997653
No 446
>PRK14707 hypothetical protein; Provisional
Probab=23.41 E-value=2.1e+03 Score=29.87 Aligned_cols=266 Identities=15% Similarity=0.078 Sum_probs=127.3
Q ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHH-hhcCCchHH
Q 004761 446 YVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLN-LSINDENKA 522 (732)
Q Consensus 446 ~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~n-Ls~~~~~k~ 522 (732)
.|..++.-++. ++......|+..|.....+...-+.. .+.-++-..++.|+ -.+..+..+|+.+|.. +..+..-++
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~-~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~ 284 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE-LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRK 284 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh-CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence 34555555543 22233455666555444444333333 33344555555554 4666666777666643 444444344
Q ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHH-HHHHHHHhccCchhHHHHHhcchHHHHHHhhcC-C-CHHHHHHHHHHHHHhcc
Q 004761 523 MIAEAGAIEPLIHVL-KSGNGGAKEN-SAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS-G-TLRGRKDAATALFNLSI 598 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL-~~~~~e~~~~-Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~-~~~~~~~Al~aL~nLs~ 598 (732)
.+-..+ +.-.+.-| +=.+..+... |..+-..|....+-+..+-..+ +..+++-|.. . +....+.|.....-|+.
T Consensus 285 al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 285 ALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARG-LSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred hcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 333222 22223333 2234344444 4444444544333332222222 2333333332 2 34444544444456666
Q ss_pred CchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHH-HHhCChhhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLA-NLSTVGEGRLAIAREGGIPSLVEVVES-GSQRGKENAASIL 674 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~-nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L 674 (732)
.++-+..+- ...|..++.-| -++...+..++..|+ .|+..++-+..+-. .++..++.-|.. ++..+...|+..|
T Consensus 363 d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 363 DPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP-QGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred CHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 655554443 33444555555 455566666666655 56777766666543 345555555543 5556666666666
Q ss_pred HHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHH
Q 004761 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLL 716 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL 716 (732)
..-..++.+.++.+--.++...|-.+.+=. ++-.++.|..+.
T Consensus 441 A~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La 483 (2710)
T PRK14707 441 AGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALA 483 (2710)
T ss_pred HHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHH
Confidence 655555666655444344444444444332 233333333333
No 447
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=23.31 E-value=35 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=21.4
Q ss_pred ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 254 IVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 254 ~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
+-.+.|-.|..|+..-+..+ ..||.|+.+|+.
T Consensus 16 i~C~dHYLCl~CLt~ml~~s-~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRS-DRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSS-SEETTTTEE---
T ss_pred eeecchhHHHHHHHHHhccc-cCCCcccCcCcc
Confidence 44567889999998877665 789999999864
No 448
>PRK12495 hypothetical protein; Provisional
Probab=22.92 E-value=77 Score=31.87 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=11.2
Q ss_pred CCCccccccCcccC
Q 004761 236 IPPYFRCPLSLELM 249 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm 249 (732)
.+..|.||.|+..+
T Consensus 39 tmsa~hC~~CG~PI 52 (226)
T PRK12495 39 TMTNAHCDECGDPI 52 (226)
T ss_pred ccchhhcccccCcc
Confidence 46789999999854
No 449
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=22.79 E-value=47 Score=34.51 Aligned_cols=52 Identities=17% Similarity=0.414 Sum_probs=30.8
Q ss_pred CCCccccccCcccCCC-------------cee-cCCCcccchHHHHH-HHhc--C--CCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMID-------------PVI-VASGQTYERVFIQK-WLDH--G--LNICPKTRQTLAHT 287 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d-------------PV~-~~~g~ty~r~~I~~-~~~~--~--~~~cP~~~~~l~~~ 287 (732)
-+.-|.|++|...+.- |-. .-||.-|.|.++-+ ++.. | ...||.|++.|.+.
T Consensus 158 s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 158 SKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred ccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 3677888888877532 322 23666676654333 3331 2 23599999888663
No 450
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=22.58 E-value=11 Score=43.66 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=89.3
Q ss_pred HHHhccCchhHHHHHhc-chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHH
Q 004761 552 LFSLSVLEEYKAKIGRS-GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKA 629 (732)
Q Consensus 552 L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~a 629 (732)
..+|++...|+..+... -....||..-...-......|+.++.||+..... .+-....+..+.+-+ +.+..+...+
T Consensus 17 ~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt~~--e~S~~~~L~t~t~Gi~S~drflimr~ 94 (847)
T KOG2312|consen 17 SRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPTSG--ESSLIKQLLTPTRGISSPDRFLIMRA 94 (847)
T ss_pred eeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcchh--hhhHHHHHhhhccCCCCCCceeEeec
Confidence 45677777888877765 3444555444444566778899999999872110 111111122222222 4567778889
Q ss_pred HHHHHHHhCChhhHHHHHH---cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh-CCCHHHHHHchh
Q 004761 630 VALLANLSTVGEGRLAIAR---EGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ-EGAVPPLVGLSQ 702 (732)
Q Consensus 630 l~iL~nLa~~~~~r~~i~~---~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~-~G~i~~L~~Ll~ 702 (732)
+.+|.+||....+-..|.+ .++...++..+--.+-...-....+|+.|...+...|..+.+ .+++..|+.+..
T Consensus 95 lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~t 171 (847)
T KOG2312|consen 95 LEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLST 171 (847)
T ss_pred cccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccch
Confidence 9999999986655443333 334555555443333334455566677777766666776765 678888888764
No 451
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.38 E-value=7.6e+02 Score=24.34 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=50.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
...++.+++.|......-+.-|...+..+.......+..=+=.-.|.+|-..|.+.|+++...++.+|..|..
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3457788888876655556666666666665522333222233567777788889999999999999998843
No 452
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=22.32 E-value=1.4e+02 Score=30.23 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCcccchHHHHHHHhcCCCCCCCCCCCCCCC-----CCcccHHHHHHH
Q 004761 257 SGQTYERVFIQKWLDHGLNICPKTRQTLAHT-----NLIPNYTVKAMI 299 (732)
Q Consensus 257 ~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-----~l~pn~~l~~~i 299 (732)
||++|++..+........+.||.|+.++.+. +..|...+....
T Consensus 119 C~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~ 166 (222)
T cd01413 119 CGSKYDLEEVKYAKKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAI 166 (222)
T ss_pred CCCCcchhHHHHhccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHH
Confidence 6777877766333323347899999877652 446655554443
No 453
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.22 E-value=9.1e+02 Score=28.95 Aligned_cols=58 Identities=22% Similarity=0.100 Sum_probs=39.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcc--Cc----hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHH
Q 004761 533 LIHVLKSGNGGAKENSAAALFSLSV--LE----EYKAKIGRSGAVKALVDLLGSGTLRGRKDAAT 591 (732)
Q Consensus 533 Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~----~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~ 591 (732)
|..-|+-.+.++|.+|+-.++++-. .+ +.++.+.+. -...|.++|+++-+.++..|..
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~ 242 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAIL 242 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHH
Confidence 4456777889999999999998853 12 234445444 3477888898887766655444
No 454
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=22.10 E-value=34 Score=35.35 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=25.8
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC--CCCCcccH
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA--HTNLIPNY 293 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~--~~~l~pn~ 293 (732)
-.|.|+||+.++..++ +.||.|...++ .....||.
T Consensus 272 iG~VCSVCLSVfC~~~---------------------PiC~~C~s~F~~t~~Pv~p~~ 308 (314)
T KOG2487|consen 272 IGFVCSVCLSVFCRFV---------------------PICKTCKSKFSFTKYPVKPNR 308 (314)
T ss_pred eeeehHHHHHHhhCCC---------------------CccchhhhhcccccCccchhh
Confidence 3688999999888774 67899888874 34455664
No 455
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.82 E-value=60 Score=22.90 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=18.4
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.+|.||-|+..+.-..-... .....||.||..+
T Consensus 4 Y~y~C~~Cg~~fe~~~~~~~--------------~~~~~CP~Cg~~~ 36 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKISD--------------DPLATCPECGGDV 36 (41)
T ss_pred EEEEcCCCCCEEEEEEecCC--------------CCCCCCCCCCCcc
Confidence 46778766665543221111 1235799999843
No 456
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.70 E-value=4.7e+02 Score=23.05 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=49.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhc------cCCHHHHHHHHHHHHHh
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLY------SEAQLTQEHAVTALLNL 514 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~------s~~~~v~~~A~~~L~nL 514 (732)
..+..|-+.|.+.++..+..|+..|-.+.+... .....+....++..++.+.. ..+..+++.+..++...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456788889999999999999999999998754 44556666666666655321 12577788877776543
No 457
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.59 E-value=86 Score=33.03 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=35.4
Q ss_pred CCCccccccCcccC--------------CCc-----eecCCCcccchHHHHHHHhc----C----CCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELM--------------IDP-----VIVASGQTYERVFIQKWLDH----G----LNICPKTRQTLAH 286 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm--------------~dP-----V~~~~g~ty~r~~I~~~~~~----~----~~~cP~~~~~l~~ 286 (732)
=+.+-.||+|+.+= -|+ -.-||||........-|-+- | +..||+|.+.|..
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 35678899998752 121 12479999888888778652 2 3469999988864
No 458
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=21.54 E-value=8.4e+02 Score=26.76 Aligned_cols=173 Identities=13% Similarity=0.133 Sum_probs=92.1
Q ss_pred cCCHHHHHHHHHHHHHhhc-C--CchHHHHHHcCCHHHHHHHHc----C----C---CHHHHHHHHHHHHHhccCchhHH
Q 004761 498 SEAQLTQEHAVTALLNLSI-N--DENKAMIAEAGAIEPLIHVLK----S----G---NGGAKENSAAALFSLSVLEEYKA 563 (732)
Q Consensus 498 s~~~~v~~~A~~~L~nLs~-~--~~~k~~i~~~g~l~~Lv~lL~----~----~---~~e~~~~Aa~~L~~Ls~~~~~k~ 563 (732)
+.+...+..|...|.+.-. + ......+.+ -++.+++.++ . + +..+...|+.+|..+..+.+...
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 3445556666666666422 1 122333322 2444444332 1 2 45677788888888876655544
Q ss_pred HHHhc---chHHHHHHhhcCCC--HHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc----C--CChHHHHHHHHH
Q 004761 564 KIGRS---GAVKALVDLLGSGT--LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM----D--PSTGMVDKAVAL 632 (732)
Q Consensus 564 ~i~~~---g~i~~Lv~lL~~~~--~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL----~--~~~~l~e~al~i 632 (732)
.+... -.+...+..+.+.+ ......++.+|..=... ..++....+..++..+ + .+..+..+.+.+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS----PKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC----CcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 44433 13455555554432 33444444444322111 2234444555555555 2 356778888999
Q ss_pred HHHHhCChhhHHHHHH-cC-cHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004761 633 LANLSTVGEGRLAIAR-EG-GIPSLVEVVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 633 L~nLa~~~~~r~~i~~-~~-~I~~Lv~lL~~~s~~~~e~A~~~L~~L~ 678 (732)
+.+|.... ...|.+ .+ .++.++..+-+.....+..|..++..+.
T Consensus 158 ~~~ll~q~--p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 158 YKRLLSQF--PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 99887643 233433 22 5777777666656666666666665544
No 459
>PRK00420 hypothetical protein; Validated
Probab=21.50 E-value=57 Score=29.36 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCC
Q 004761 273 GLNICPKTRQTLA 285 (732)
Q Consensus 273 ~~~~cP~~~~~l~ 285 (732)
|...||.|+..+.
T Consensus 39 g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 39 GEVVCPVHGKVYI 51 (112)
T ss_pred CceECCCCCCeee
Confidence 3345899987653
No 460
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=21.34 E-value=49 Score=30.50 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=16.8
Q ss_pred cCCCcccchHHHHHHHhcCCCCCCCCCCC
Q 004761 255 VASGQTYERVFIQKWLDHGLNICPKTRQT 283 (732)
Q Consensus 255 ~~~g~ty~r~~I~~~~~~~~~~cP~~~~~ 283 (732)
+.||++|+-...+ +..| ||.||-.
T Consensus 5 t~Cg~~f~dgs~e--il~G---CP~CGg~ 28 (131)
T PF09845_consen 5 TKCGRVFEDGSKE--ILSG---CPECGGN 28 (131)
T ss_pred CcCCCCcCCCcHH--HHcc---CcccCCc
Confidence 5699999766544 4334 9999864
No 461
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=21.05 E-value=1.1e+02 Score=29.35 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=31.0
Q ss_pred hhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004761 43 LLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSP 85 (732)
Q Consensus 43 lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~ 85 (732)
-|..++||+...-.|--.....+.+.|..-+..||.|++.|-.
T Consensus 139 ~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRecl~ 181 (189)
T KOG4713|consen 139 DLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVRECLQ 181 (189)
T ss_pred HHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHHHH
Confidence 3456778886332233334577889999999999999999954
No 462
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.03 E-value=6.6e+02 Score=23.50 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 562 KAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 562 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
|........-..+..+|.++++++++.|+.||..-
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44444446667888999999999999999999864
No 463
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.82 E-value=72 Score=28.24 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=16.0
Q ss_pred ccccccCcc----cCCCceecC-CCcccchHHHH
Q 004761 239 YFRCPLSLE----LMIDPVIVA-SGQTYERVFIQ 267 (732)
Q Consensus 239 ~f~Cpi~~~----lm~dPV~~~-~g~ty~r~~I~ 267 (732)
.-+||=|+. |=+||++-| ||.+|-|+..+
T Consensus 9 KridPetg~KFYDLNrdPiVsPytG~s~P~s~fe 42 (129)
T COG4530 9 KRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFE 42 (129)
T ss_pred cccCccccchhhccCCCccccCcccccchHHHHH
Confidence 345666654 445666654 66666555433
No 464
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=20.69 E-value=1.4e+02 Score=28.94 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=32.4
Q ss_pred CCCcccchHHHHHHHhcC-CCCCCCCCCCCCC-----CCCcccHHHHHHHHHHHHHc
Q 004761 256 ASGQTYERVFIQKWLDHG-LNICPKTRQTLAH-----TNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 256 ~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~-----~~l~pn~~l~~~i~~~~~~~ 306 (732)
.||+.|++..+....... .+.||.|+..+.+ .+-.| ..+.+.++ |...-
T Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~-~~~~~ 164 (178)
T PF02146_consen 110 KCGKEYDREDIVDSIDEEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIE-DAEEA 164 (178)
T ss_dssp TTSBEEEGHHHHHHHHTTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHH-HHHH-
T ss_pred CCCccccchhhcccccccccccccccCccCCCCeeecCCCCH-HHHHHHHH-HHHcC
Confidence 488889888877665543 4689999988754 24455 56666666 55543
No 465
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.59 E-value=33 Score=29.98 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCCcccH
Q 004761 273 GLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 273 ~~~~cP~~~~~l~~~~l~pn~ 293 (732)
|...||.||.++..--+.-|.
T Consensus 48 G~t~CP~Cg~~~e~~fvva~~ 68 (115)
T COG1885 48 GSTSCPKCGEPFESAFVVANT 68 (115)
T ss_pred ccccCCCCCCccceeEEEecc
Confidence 556799999988665455553
No 466
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=20.58 E-value=1.1e+03 Score=25.71 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHHhh---chHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHH
Q 004761 582 TLRGRKDAATALFNLSIFHENKARIIQA---GAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSL 655 (732)
Q Consensus 582 ~~~~~~~Al~aL~nLs~~~~n~~~lv~~---G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~L 655 (732)
+.+....|+++|..+..++.--..+-.. -++...+..+ ..+..++...+++|..=-..+ .+.....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~----~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP----KIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC----cccchhhHHHH
Confidence 4677888999999888776544433321 2455555555 335566666666666422211 13233334444
Q ss_pred HHHH---h--cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCC-CHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 656 VEVV---E--SGSQRGKENAASILLQLCLHSPKFCTLVLQEG-AVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 656 v~lL---~--~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G-~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+..+ . -++......++.++.+|....|.. .+...+ -++.|+..+-+....++.+|..++..+.
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4433 2 245666777788888888765542 111222 3566666666666677777777665553
No 467
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.41 E-value=2.6e+02 Score=27.38 Aligned_cols=63 Identities=25% Similarity=0.420 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcC---ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLH---SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~---~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
++.++++..+.+...+..|+.++..+-+. +|. -.+|.|+.|..+.++.++.+|..+++.+.+.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 55666666677788888888887665553 222 2478899999888899999999998887554
No 468
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=20.41 E-value=6e+02 Score=25.63 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHh-hCCCcchhHHHhcchHHHHHHHHH
Q 004761 28 KPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMEN-WSPKMSKIFSVLHSEPLMMKIQSS 106 (732)
Q Consensus 28 ~~~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~-c~~~~Sklyll~~~~~i~~~f~~~ 106 (732)
..+.|||.++-.-+.=+.||++.++..- ++....-+.-+ ++-...||+. |...|.+|++.. .+.--.=|+..
T Consensus 68 ~vF~KyC~k~~~~~~C~~~f~~~v~~Cl---~~ee~~~~~~~---~~i~~~ll~fvC~k~Gd~Ialf~-~~~g~eC~~~~ 140 (213)
T PF07165_consen 68 EVFNKYCPKRPQAKECFDPFTEKVKPCL---DEEEKEILDVM---MNIIPSLLDFVCYKDGDRIALFI-AEGGPECFESL 140 (213)
T ss_pred HHHHHHhHhhHHHHHHHHHHHhhcccCC---CHHHHHHHHHH---HHHHHHHHHHHHcCCchhhHhhc-ccCcHHHHHHh
Confidence 3569999999999999999999998653 45555444433 4444455555 887778887633 22223334444
Q ss_pred HHHHHHHHHh
Q 004761 107 SLEICHILYR 116 (732)
Q Consensus 107 ~~~i~~~L~~ 116 (732)
...|.+....
T Consensus 141 ~~~i~~C~~~ 150 (213)
T PF07165_consen 141 KDNIQQCANK 150 (213)
T ss_pred hHHHHHHHHH
Confidence 5555555543
No 469
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.30 E-value=2.1e+02 Score=25.78 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCH
Q 004761 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNG 542 (732)
Q Consensus 488 ~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~ 542 (732)
+|+.|+.-|...++++...|+.+|...+.++.....++... |.+..+-+.|.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~--p~l~~L~~~g~~ 61 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLR--PSLDHLGDIGSP 61 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcC--cHHHHHHHcCHH
No 470
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.20 E-value=1.6e+02 Score=29.89 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=38.1
Q ss_pred ccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC-c-------c-----------cHHHHHHHHH
Q 004761 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNL-I-------P-----------NYTVKAMIEN 301 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l-~-------p-----------n~~l~~~i~~ 301 (732)
.|++|.+.+.. .++..|..|...|-.- ...||.|+.++..... - | +-.++++|..
T Consensus 7 ~C~~C~~~~~~-----~~~~lC~~C~~~l~~~-~~~C~~Cg~~~~~~~~~C~~C~~~~~~~~~~~a~~~Y~g~~r~lI~~ 80 (227)
T PRK11595 7 LCWLCRMPLAL-----SHWGICSVCSRALRTL-KTCCPQCGLPATHPHLPCGRCLQKPPPWQRLVFVSDYAPPLSGLIHQ 80 (227)
T ss_pred cCccCCCccCC-----CCCcccHHHHhhCCcc-cCcCccCCCcCCCCCCCcHHHHcCCCchhheeeeeecccHHHHHHHH
Confidence 59999986532 2345788888775322 2579999987543211 1 1 2247888888
Q ss_pred HHHHcC
Q 004761 302 WCEENN 307 (732)
Q Consensus 302 ~~~~~~ 307 (732)
|+-.+.
T Consensus 81 ~Ky~~~ 86 (227)
T PRK11595 81 LKFSRR 86 (227)
T ss_pred HHHCcc
Confidence 876654
Done!