Query 004761
Match_columns 732
No_of_seqs 459 out of 2786
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 2.2E-29 7.7E-34 272.4 26.8 265 460-725 47-338 (354)
2 3nmz_A APC variant protein; pr 100.0 2.9E-28 9.8E-33 271.5 27.6 262 463-725 166-454 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 1.6E-28 5.6E-33 276.0 24.5 276 446-722 3-361 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 1.7E-27 5.9E-32 271.1 28.2 279 444-723 47-386 (584)
5 1xm9_A Plakophilin 1; armadill 99.9 2.2E-26 7.5E-31 258.6 28.5 282 441-724 40-452 (457)
6 3now_A UNC-45 protein, SD10334 99.9 1.5E-26 5.1E-31 271.7 27.8 281 441-721 417-737 (810)
7 3nmz_A APC variant protein; pr 99.9 2.1E-26 7.1E-31 256.6 24.1 281 441-721 66-408 (458)
8 3l6x_A Catenin delta-1; cateni 99.9 9.5E-26 3.2E-30 256.8 29.9 282 440-723 85-478 (584)
9 3ul1_B Importin subunit alpha- 99.9 5E-26 1.7E-30 259.3 27.1 283 439-721 94-387 (510)
10 3tpo_A Importin subunit alpha- 99.9 1.2E-25 4.2E-30 257.3 29.2 283 439-721 113-406 (529)
11 3nmw_A APC variant protein; AR 99.9 5E-26 1.7E-30 246.2 23.1 245 439-683 67-338 (354)
12 3now_A UNC-45 protein, SD10334 99.9 3.9E-25 1.3E-29 259.7 27.9 282 441-723 491-784 (810)
13 4b8j_A Importin subunit alpha- 99.9 4.3E-24 1.5E-28 244.0 32.1 282 441-722 113-401 (528)
14 4hxt_A De novo protein OR329; 99.9 1.1E-23 3.7E-28 215.5 29.5 242 487-728 2-248 (252)
15 4hxt_A De novo protein OR329; 99.9 1E-23 3.5E-28 215.6 28.9 237 446-682 3-244 (252)
16 3tpo_A Importin subunit alpha- 99.9 1.9E-23 6.5E-28 239.1 33.4 281 441-721 158-449 (529)
17 3ul1_B Importin subunit alpha- 99.9 2.9E-23 9.9E-28 236.5 31.9 281 441-721 139-430 (510)
18 4b8j_A Importin subunit alpha- 99.9 3.6E-23 1.2E-27 236.3 31.9 278 444-721 73-358 (528)
19 4db8_A Armadillo-repeat protei 99.9 9.3E-24 3.2E-28 216.9 23.6 235 445-679 12-251 (252)
20 1wa5_B Importin alpha subunit; 99.9 6.2E-23 2.1E-27 234.6 32.8 282 441-722 126-413 (530)
21 4db8_A Armadillo-repeat protei 99.9 5.3E-23 1.8E-27 211.2 25.5 235 487-721 12-251 (252)
22 1wa5_B Importin alpha subunit; 99.9 3.2E-22 1.1E-26 228.7 32.9 278 444-721 86-370 (530)
23 2jdq_A Importin alpha-1 subuni 99.9 6.2E-22 2.1E-26 220.3 33.1 279 443-722 105-391 (450)
24 2jdq_A Importin alpha-1 subuni 99.9 3.9E-22 1.3E-26 222.0 31.4 276 445-721 64-347 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 1.2E-21 4.1E-26 222.9 28.9 278 444-722 16-340 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 1.7E-21 5.7E-26 228.3 28.7 278 443-721 12-336 (644)
27 1jdh_A Beta-catenin; beta-cate 99.9 6.3E-21 2.2E-25 216.9 29.4 280 441-722 97-386 (529)
28 3tt9_A Plakophilin-2; cell adh 99.9 1E-21 3.4E-26 199.0 19.8 195 444-639 7-230 (233)
29 3opb_A SWI5-dependent HO expre 99.9 3.2E-21 1.1E-25 222.5 24.2 286 442-727 373-734 (778)
30 2z6h_A Catenin beta-1, beta-ca 99.9 2.8E-20 9.6E-25 217.9 30.2 280 441-722 94-383 (644)
31 3tt9_A Plakophilin-2; cell adh 99.9 5.2E-21 1.8E-25 193.7 20.1 193 487-680 8-230 (233)
32 2f42_A STIP1 homology and U-bo 99.9 3.2E-22 1.1E-26 192.2 8.6 94 207-309 83-176 (179)
33 2z6g_A B-catenin; FULL-length, 99.9 6.1E-20 2.1E-24 219.3 28.3 277 444-721 149-472 (780)
34 4db6_A Armadillo repeat protei 99.9 7.1E-20 2.4E-24 182.6 24.1 196 444-639 11-210 (210)
35 2z6g_A B-catenin; FULL-length, 99.9 5E-20 1.7E-24 220.0 27.0 271 445-723 115-391 (780)
36 4db6_A Armadillo repeat protei 99.8 1.1E-19 3.8E-24 181.2 24.3 196 526-721 10-209 (210)
37 2kr4_A Ubiquitin conjugation f 99.8 4.9E-22 1.7E-26 169.2 5.6 73 234-307 9-81 (85)
38 2kre_A Ubiquitin conjugation f 99.8 7.2E-22 2.5E-26 173.1 6.5 74 233-307 23-96 (100)
39 1wgm_A Ubiquitin conjugation f 99.8 1.4E-21 4.9E-26 170.5 8.1 74 234-308 17-91 (98)
40 3m62_A Ubiquitin conjugation f 99.8 4.3E-20 1.5E-24 214.8 8.8 123 157-307 832-959 (968)
41 3opb_A SWI5-dependent HO expre 99.8 6.9E-18 2.3E-22 194.8 23.7 273 446-720 335-682 (778)
42 1t1h_A Gspef-atpub14, armadill 99.8 1.4E-19 4.9E-24 151.6 6.8 75 234-308 3-77 (78)
43 2c2l_A CHIP, carboxy terminus 99.8 1.3E-18 4.6E-23 182.2 13.9 79 231-309 200-278 (281)
44 1xqr_A HSPBP1 protein; armadil 99.8 1.2E-16 4.1E-21 168.3 25.9 233 446-679 29-287 (296)
45 1xqr_A HSPBP1 protein; armadil 99.8 4.2E-17 1.4E-21 171.8 22.3 181 542-722 54-239 (296)
46 2yu4_A E3 SUMO-protein ligase 99.7 4.5E-19 1.5E-23 153.9 4.6 73 236-308 4-85 (94)
47 2bay_A PRE-mRNA splicing facto 99.6 4.3E-17 1.5E-21 128.9 2.3 55 239-294 3-58 (61)
48 3ztg_A E3 ubiquitin-protein li 99.6 2.4E-15 8.3E-20 130.0 8.4 76 233-308 7-85 (92)
49 3htk_C E3 SUMO-protein ligase 99.6 1.8E-14 6.3E-19 144.4 13.6 70 236-305 178-251 (267)
50 3fl2_A E3 ubiquitin-protein li 99.5 3E-14 1E-18 130.3 5.1 70 236-305 49-119 (124)
51 3grl_A General vesicular trans 99.4 1.2E-11 4E-16 139.6 24.8 272 444-719 20-340 (651)
52 1z6u_A NP95-like ring finger p 99.4 7.5E-14 2.6E-18 131.6 5.1 69 236-304 75-144 (150)
53 2y43_A E3 ubiquitin-protein li 99.4 2.5E-13 8.5E-18 118.9 4.0 70 236-306 19-89 (99)
54 3grl_A General vesicular trans 99.4 1.2E-10 3.9E-15 131.6 26.3 276 444-719 59-392 (651)
55 2ckl_A Polycomb group ring fin 99.3 9.6E-13 3.3E-17 117.1 4.6 67 236-303 12-83 (108)
56 2egp_A Tripartite motif-contai 99.3 1.2E-13 4.2E-18 115.5 -1.9 64 235-298 8-77 (79)
57 3lrq_A E3 ubiquitin-protein li 99.3 1.2E-12 4.2E-17 114.7 4.3 71 236-306 19-90 (100)
58 3hct_A TNF receptor-associated 99.3 1.3E-12 4.3E-17 118.3 3.8 68 235-302 14-81 (118)
59 2ecw_A Tripartite motif-contai 99.3 6.4E-13 2.2E-17 112.6 1.5 64 235-298 15-83 (85)
60 4ayc_A E3 ubiquitin-protein li 99.3 4E-12 1.4E-16 118.3 7.0 64 237-303 51-114 (138)
61 1jm7_B BARD1, BRCA1-associated 99.3 1.8E-12 6.1E-17 117.1 4.1 68 236-306 19-87 (117)
62 3l11_A E3 ubiquitin-protein li 99.3 9.2E-13 3.1E-17 118.7 2.1 69 236-304 12-87 (115)
63 2ckl_B Ubiquitin ligase protei 99.3 1.7E-12 5.8E-17 124.7 3.8 69 236-304 51-121 (165)
64 2ecv_A Tripartite motif-contai 99.3 8.5E-13 2.9E-17 111.8 1.2 64 235-298 15-83 (85)
65 2ecy_A TNF receptor-associated 99.2 5E-12 1.7E-16 101.8 5.5 55 235-289 11-65 (66)
66 2csy_A Zinc finger protein 183 99.2 2.4E-12 8.2E-17 108.2 3.7 64 235-300 11-74 (81)
67 2yur_A Retinoblastoma-binding 99.2 6.7E-12 2.3E-16 103.5 5.7 59 234-292 10-71 (74)
68 1jm7_A BRCA1, breast cancer ty 99.2 7.7E-12 2.6E-16 111.9 4.7 69 237-305 19-89 (112)
69 2djb_A Polycomb group ring fin 99.2 1.6E-11 5.6E-16 100.6 5.8 58 235-293 11-69 (72)
70 3ltm_A Alpha-REP4; protein eng 99.1 3.2E-09 1.1E-13 105.3 21.5 188 444-682 18-206 (211)
71 2ysl_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 98.9 5.5 55 235-289 16-72 (73)
72 3hcs_A TNF receptor-associated 99.1 1.8E-11 6E-16 118.2 3.8 68 235-302 14-81 (170)
73 1g25_A CDK-activating kinase a 99.1 3.1E-11 1.1E-15 96.8 4.5 55 238-292 2-61 (65)
74 1oyz_A Hypothetical protein YI 99.1 2.3E-09 7.8E-14 111.3 20.1 197 444-678 22-220 (280)
75 1rmd_A RAG1; V(D)J recombinati 99.1 1.6E-11 5.5E-16 110.6 3.1 66 236-301 20-86 (116)
76 3knv_A TNF receptor-associated 99.1 9.1E-12 3.1E-16 116.0 0.8 66 235-300 27-101 (141)
77 3ltm_A Alpha-REP4; protein eng 99.1 4.4E-09 1.5E-13 104.3 20.1 189 486-725 18-207 (211)
78 3ltj_A Alpharep-4; protein eng 99.1 8E-09 2.7E-13 101.6 20.3 184 444-678 13-197 (201)
79 2ysj_A Tripartite motif-contai 99.1 9.5E-11 3.2E-15 93.3 5.1 46 235-280 16-63 (63)
80 3ng2_A RNF4, snurf, ring finge 99.1 5.5E-11 1.9E-15 97.0 3.2 58 235-293 6-70 (71)
81 3ltj_A Alpharep-4; protein eng 99.0 7.1E-09 2.4E-13 102.0 18.3 184 487-721 14-198 (201)
82 2ecj_A Tripartite motif-contai 99.0 4.3E-10 1.5E-14 87.7 4.8 46 235-280 11-58 (58)
83 4fdd_A Transportin-1; heat rep 99.0 5.2E-09 1.8E-13 126.1 16.7 279 442-722 125-472 (852)
84 2ct2_A Tripartite motif protei 99.0 6.5E-10 2.2E-14 94.7 6.2 54 234-287 10-69 (88)
85 2d8t_A Dactylidin, ring finger 99.0 2.9E-10 9.9E-15 92.8 3.7 51 236-287 12-62 (71)
86 1oyz_A Hypothetical protein YI 99.0 4.6E-08 1.6E-12 101.4 21.4 199 484-720 20-220 (280)
87 2xeu_A Ring finger protein 4; 98.9 2.1E-10 7.2E-15 91.4 1.8 55 238-293 2-63 (64)
88 1e4u_A Transcriptional repress 98.9 1.5E-09 5.3E-14 89.9 5.8 55 235-289 7-65 (78)
89 2ea6_A Ring finger protein 4; 98.9 1.1E-09 3.6E-14 88.7 4.0 51 235-286 11-68 (69)
90 2ect_A Ring finger protein 126 98.8 2E-09 6.9E-14 89.4 5.2 57 235-292 11-70 (78)
91 4fdd_A Transportin-1; heat rep 98.8 5.1E-08 1.7E-12 117.5 15.8 271 445-720 215-511 (852)
92 1chc_A Equine herpes virus-1 r 98.7 7.2E-09 2.5E-13 83.5 4.3 48 238-286 4-52 (68)
93 1b3u_A Protein (protein phosph 98.7 6.2E-07 2.1E-11 102.4 21.8 264 444-719 86-351 (588)
94 4ap4_A E3 ubiquitin ligase RNF 98.7 4E-09 1.4E-13 97.0 2.8 55 237-292 5-66 (133)
95 4gmo_A Putative uncharacterize 98.7 1.7E-07 5.9E-12 110.0 17.2 192 527-719 33-256 (684)
96 2ecm_A Ring finger and CHY zin 98.7 9.7E-09 3.3E-13 79.0 4.2 47 238-285 4-54 (55)
97 1b3u_A Protein (protein phosph 98.7 4.7E-07 1.6E-11 103.4 19.9 266 445-721 281-548 (588)
98 2ecn_A Ring finger protein 141 98.7 3.6E-09 1.2E-13 85.9 1.2 52 235-288 11-62 (70)
99 1bor_A Transcription factor PM 98.7 5.2E-09 1.8E-13 81.0 2.1 46 237-286 4-49 (56)
100 4gmo_A Putative uncharacterize 98.7 2.2E-07 7.6E-12 109.0 16.1 192 487-679 34-258 (684)
101 1ibr_B P95, importin beta-1 su 98.6 1E-07 3.4E-12 105.4 12.4 276 443-724 126-440 (462)
102 2ep4_A Ring finger protein 24; 98.6 2.3E-08 7.8E-13 82.1 5.1 52 235-287 11-65 (74)
103 2kiz_A E3 ubiquitin-protein li 98.6 3.4E-08 1.2E-12 79.8 5.5 51 235-286 10-63 (69)
104 1iym_A EL5; ring-H2 finger, ub 98.6 2.4E-08 8.3E-13 76.8 4.3 49 236-285 2-54 (55)
105 2vgl_B AP-2 complex subunit be 98.6 1.2E-06 4.2E-11 100.9 20.2 264 444-719 120-417 (591)
106 1v87_A Deltex protein 2; ring- 98.6 3.4E-08 1.2E-12 88.4 5.3 51 236-286 22-94 (114)
107 2l0b_A E3 ubiquitin-protein li 98.6 2.9E-08 1E-12 85.0 3.9 50 236-286 37-89 (91)
108 1x4j_A Ring finger protein 38; 98.6 3E-08 1E-12 81.6 3.7 49 237-286 21-72 (75)
109 2vgl_B AP-2 complex subunit be 98.5 8.8E-07 3E-11 102.2 16.6 261 445-724 49-314 (591)
110 2y1n_A E3 ubiquitin-protein li 98.5 3.5E-08 1.2E-12 105.5 3.2 49 239-287 332-380 (389)
111 4ic3_A E3 ubiquitin-protein li 98.5 2.6E-08 9.1E-13 81.7 1.5 44 238-286 23-67 (74)
112 4ap4_A E3 ubiquitin ligase RNF 98.4 4.1E-08 1.4E-12 90.0 0.9 57 236-293 69-132 (133)
113 3b2a_A TON_1937, putative unch 98.3 1.7E-05 5.8E-10 78.0 17.4 219 444-673 32-255 (265)
114 2ecg_A Baculoviral IAP repeat- 98.3 1.7E-07 5.7E-12 77.2 2.7 44 238-286 24-68 (75)
115 1wim_A KIAA0161 protein; ring 98.3 1.4E-07 4.8E-12 81.3 0.9 67 237-304 3-83 (94)
116 1qgr_A Protein (importin beta 98.3 2.1E-05 7.1E-10 94.3 19.8 274 443-723 126-439 (876)
117 1qgr_A Protein (importin beta 98.2 2.1E-05 7.1E-10 94.3 19.3 272 445-722 172-480 (876)
118 2vje_A E3 ubiquitin-protein li 98.2 5.4E-07 1.8E-11 71.6 3.4 49 236-285 5-56 (64)
119 2ecl_A Ring-box protein 2; RNF 98.2 7.7E-07 2.6E-11 74.3 4.0 48 238-286 14-76 (81)
120 2bpt_A Importin beta-1 subunit 98.2 1.1E-05 3.8E-10 96.5 15.2 268 445-721 369-668 (861)
121 1w63_A Adapter-related protein 98.2 1.7E-05 5.8E-10 91.9 16.1 251 446-721 108-414 (618)
122 2bpt_A Importin beta-1 subunit 98.2 3.7E-05 1.3E-09 91.9 19.2 274 443-722 132-441 (861)
123 1w63_A Adapter-related protein 98.2 7.1E-05 2.4E-09 86.7 20.7 258 444-721 141-452 (618)
124 2vje_B MDM4 protein; proto-onc 98.1 1.1E-06 3.6E-11 69.6 3.0 47 238-285 6-55 (63)
125 2yho_A E3 ubiquitin-protein li 98.1 3.8E-07 1.3E-11 75.7 -0.4 44 238-286 17-61 (79)
126 1u6g_C TIP120 protein, CAND1; 98.1 1E-05 3.5E-10 101.2 12.4 272 444-722 5-285 (1230)
127 1ibr_B P95, importin beta-1 su 98.1 3.7E-05 1.3E-09 84.6 15.2 265 447-722 3-289 (462)
128 3t6p_A Baculoviral IAP repeat- 98.0 1.2E-06 4.1E-11 93.2 1.2 45 237-286 293-338 (345)
129 3dpl_R Ring-box protein 1; ubi 98.0 4.9E-06 1.7E-10 73.0 4.6 47 238-285 36-100 (106)
130 2qk2_A LP04448P; mini spindles 97.9 6E-05 2.1E-09 76.1 12.8 180 449-638 19-205 (242)
131 2qk2_A LP04448P; mini spindles 97.9 8.5E-05 2.9E-09 75.0 12.7 183 532-722 19-206 (242)
132 2vgl_A Adaptor protein complex 97.9 0.00081 2.8E-08 77.7 22.6 252 445-719 146-431 (621)
133 1ho8_A Vacuolar ATP synthase s 97.8 0.00039 1.3E-08 76.0 17.7 228 491-719 171-474 (480)
134 2ea5_A Cell growth regulator w 97.8 1.6E-05 5.5E-10 63.8 4.8 45 237-286 13-58 (68)
135 1u6g_C TIP120 protein, CAND1; 97.8 3.6E-05 1.2E-09 96.3 10.5 226 445-681 48-286 (1230)
136 2d8s_A Cellular modulator of i 97.7 3.3E-05 1.1E-09 64.0 5.3 55 237-291 13-76 (80)
137 2vgl_A Adaptor protein complex 97.7 0.0015 5.2E-08 75.5 20.6 251 447-720 113-397 (621)
138 3b2a_A TON_1937, putative unch 97.7 0.0012 4.2E-08 65.0 16.1 221 487-720 33-260 (265)
139 1te4_A Conserved protein MTH18 97.7 8.3E-06 2.8E-10 74.3 0.8 119 445-595 12-130 (131)
140 4a0k_B E3 ubiquitin-protein li 97.6 9E-06 3.1E-10 72.4 0.0 45 240-285 49-111 (117)
141 1te4_A Conserved protein MTH18 97.6 1.5E-05 5.1E-10 72.6 1.3 119 486-635 11-130 (131)
142 2qk1_A Protein STU2; STU2P, XM 97.5 0.00019 6.4E-09 73.1 8.9 187 450-638 21-220 (249)
143 4ady_A RPN2, 26S proteasome re 97.4 0.0069 2.4E-07 71.9 21.2 233 447-721 431-676 (963)
144 3dad_A FH1/FH2 domain-containi 97.4 0.0049 1.7E-07 64.3 17.7 174 446-619 119-314 (339)
145 3dad_A FH1/FH2 domain-containi 97.4 0.0029 1E-07 66.0 15.6 145 575-719 124-284 (339)
146 2qk1_A Protein STU2; STU2P, XM 97.4 0.00063 2.1E-08 69.2 10.2 189 533-722 21-221 (249)
147 2iw3_A Elongation factor 3A; a 97.3 0.031 1.1E-06 67.0 25.3 262 445-724 54-327 (986)
148 3tjz_B Coatomer subunit gamma; 97.1 0.011 3.8E-07 62.9 16.6 246 448-725 71-320 (355)
149 3tjz_B Coatomer subunit gamma; 96.8 0.0058 2E-07 65.1 11.8 236 447-713 106-345 (355)
150 1ho8_A Vacuolar ATP synthase s 96.6 0.37 1.3E-05 52.7 24.2 195 444-640 76-303 (480)
151 2db0_A 253AA long hypothetical 96.6 0.33 1.1E-05 46.0 20.3 212 487-721 32-246 (253)
152 2fv2_A RCD1 required for cell 96.5 0.25 8.5E-06 49.4 19.8 229 446-677 4-266 (268)
153 4ady_A RPN2, 26S proteasome re 96.5 0.42 1.5E-05 56.8 25.3 233 446-721 393-641 (963)
154 2db0_A 253AA long hypothetical 96.5 0.63 2.2E-05 44.2 24.6 214 443-679 30-246 (253)
155 2ct0_A Non-SMC element 1 homol 96.4 0.0034 1.2E-07 50.8 5.0 48 239-286 15-64 (74)
156 1vyx_A ORF K3, K3RING; zinc-bi 96.4 0.0035 1.2E-07 48.6 4.5 48 238-285 5-58 (60)
157 2iw3_A Elongation factor 3A; a 96.3 0.046 1.6E-06 65.5 15.8 260 447-725 16-284 (986)
158 3oc3_A Helicase MOT1, MOT1; re 96.0 0.0099 3.4E-07 65.5 7.2 249 437-717 168-432 (800)
159 4ffb_C Protein STU2; tubulin f 95.8 0.23 7.7E-06 50.7 16.3 185 450-639 14-213 (278)
160 3k1l_B Fancl; UBC, ring, RWD, 95.4 0.0028 9.6E-08 65.8 0.4 47 239-285 308-372 (381)
161 3vk6_A E3 ubiquitin-protein li 95.3 0.013 4.4E-07 49.5 3.9 51 241-291 3-54 (101)
162 3i2d_A E3 SUMO-protein ligase 95.2 0.013 4.6E-07 61.7 4.5 63 238-300 248-314 (371)
163 3ebb_A Phospholipase A2-activa 95.1 0.65 2.2E-05 48.2 17.2 185 488-673 104-300 (304)
164 2of3_A ZYG-9; multifunctional 94.9 0.75 2.6E-05 46.6 16.5 178 448-637 49-235 (266)
165 3ebb_A Phospholipase A2-activa 94.7 2.2 7.4E-05 44.2 19.7 137 581-719 160-304 (304)
166 4ffb_C Protein STU2; tubulin f 94.4 0.61 2.1E-05 47.4 14.6 185 533-723 14-214 (278)
167 4fo9_A E3 SUMO-protein ligase 94.2 0.036 1.2E-06 58.3 4.9 64 237-300 213-280 (360)
168 1upk_A MO25 protein; transfera 94.1 1.7 5.8E-05 45.2 17.0 196 444-641 77-286 (341)
169 1wa5_C Importin alpha RE-expor 93.5 1.7 5.7E-05 52.5 18.7 248 460-721 376-670 (960)
170 2fv2_A RCD1 required for cell 93.4 1.9 6.3E-05 43.1 15.2 146 462-608 73-234 (268)
171 2jun_A Midline-1; B-BOX, TRIM, 93.2 0.044 1.5E-06 47.0 2.8 34 238-271 2-38 (101)
172 1wa5_C Importin alpha RE-expor 93.0 0.95 3.2E-05 54.7 15.3 217 456-678 416-669 (960)
173 2of3_A ZYG-9; multifunctional 91.5 2 6.8E-05 43.5 13.0 177 492-683 51-240 (266)
174 3u0r_A Apoptosis inhibitor 5; 88.9 11 0.00036 41.2 16.5 128 448-594 32-159 (507)
175 2f31_A Diaphanous protein homo 87.7 14 0.00049 36.3 15.8 168 450-618 5-207 (233)
176 2x1g_F Cadmus; transport prote 87.4 14 0.00047 44.4 18.6 210 457-679 476-722 (971)
177 3eg5_B Protein diaphanous homo 87.2 15 0.0005 39.2 16.6 170 448-618 69-273 (383)
178 3nw0_A Non-structural maintena 87.2 0.86 2.9E-05 45.5 6.4 49 239-287 180-230 (238)
179 2f31_A Diaphanous protein homo 86.8 9.8 0.00033 37.5 14.0 144 521-666 37-215 (233)
180 2x1g_F Cadmus; transport prote 85.5 36 0.0012 40.7 20.8 209 499-720 476-721 (971)
181 1lrv_A LRV, leucine-rich repea 84.2 0.83 2.8E-05 45.8 4.6 46 652-716 196-241 (244)
182 3eg5_B Protein diaphanous homo 83.9 23 0.00078 37.7 16.1 139 521-661 103-275 (383)
183 3m1i_C Exportin-1; heat repeat 81.4 44 0.0015 40.4 19.4 218 446-680 17-264 (1049)
184 2bnx_A Diaphanous protein homo 80.6 44 0.0015 35.5 16.8 176 449-625 8-219 (386)
185 2bnx_A Diaphanous protein homo 80.6 21 0.00072 38.0 14.3 142 568-709 46-220 (386)
186 4hat_C Exportin-1; heat repeat 78.6 18 0.00062 43.8 14.4 140 457-600 465-620 (1023)
187 2x19_B Importin-13; nuclear tr 78.4 53 0.0018 39.0 18.6 133 497-639 459-600 (963)
188 2x19_B Importin-13; nuclear tr 77.7 26 0.00089 41.8 15.5 153 455-619 459-621 (963)
189 3oc3_A Helicase MOT1, MOT1; re 77.5 2.7 9.2E-05 46.7 5.9 166 445-634 263-432 (800)
190 4hat_C Exportin-1; heat repeat 76.5 82 0.0028 38.1 19.3 218 445-679 16-263 (1023)
191 3u0r_A Apoptosis inhibitor 5; 71.1 26 0.00089 38.2 11.5 118 580-716 39-158 (507)
192 1weo_A Cellulose synthase, cat 71.1 7.9 0.00027 31.7 5.7 48 239-286 16-70 (93)
193 3c2g_A SYS-1 protein; beta-cat 70.7 1.1E+02 0.0036 32.0 15.5 125 552-677 266-401 (619)
194 3gjx_A Exportin-1; transport, 70.6 1E+02 0.0035 37.3 18.1 220 444-680 27-276 (1073)
195 3ibv_A Exportin-T; karyopherin 70.2 1.5E+02 0.005 35.7 19.4 217 447-680 8-261 (980)
196 3pwf_A Rubrerythrin; non heme 70.0 20 0.0007 33.4 9.4 31 235-285 134-164 (170)
197 3l9t_A Putative uncharacterize 68.1 55 0.0019 32.2 12.2 139 534-691 77-219 (240)
198 2kkx_A Uncharacterized protein 65.8 4.1 0.00014 34.2 3.0 57 232-289 19-82 (102)
199 3c2g_A SYS-1 protein; beta-cat 64.4 58 0.002 34.0 11.8 111 593-705 266-380 (619)
200 3qml_C Protein SLS1, nucleotid 63.6 1.1E+02 0.0037 31.3 13.7 145 530-679 24-189 (315)
201 2jvx_A NF-kappa-B essential mo 62.8 2.1 7.2E-05 27.3 0.6 16 237-252 1-16 (28)
202 1x5b_A Signal transducing adap 56.8 21 0.0007 33.1 6.6 72 444-515 51-124 (163)
203 3ldz_A STAM-1, signal transduc 56.3 14 0.00048 33.3 5.3 73 651-723 43-116 (140)
204 1mhq_A ADP-ribosylation factor 55.3 26 0.00089 31.9 6.9 72 444-515 37-115 (148)
205 3gjx_A Exportin-1; transport, 54.9 2.3E+02 0.0079 34.3 17.1 214 489-721 30-275 (1073)
206 3m1i_C Exportin-1; heat repeat 54.3 72 0.0024 38.5 12.8 138 457-598 465-618 (1049)
207 3qml_C Protein SLS1, nucleotid 54.1 1.9E+02 0.0066 29.4 14.3 146 570-720 23-188 (315)
208 3ldz_A STAM-1, signal transduc 54.0 18 0.00062 32.5 5.6 72 444-515 41-113 (140)
209 3mjh_B Early endosome antigen 53.9 3 0.0001 28.0 0.2 16 238-253 4-19 (34)
210 3ibv_A Exportin-T; karyopherin 53.1 3.6E+02 0.012 32.2 20.4 185 448-638 43-260 (980)
211 1x5b_A Signal transducing adap 52.7 23 0.0008 32.7 6.3 72 651-722 53-126 (163)
212 1mhq_A ADP-ribosylation factor 51.1 26 0.00088 31.9 6.2 72 651-722 39-117 (148)
213 1juq_A ADP-ribosylation factor 50.0 25 0.00087 32.8 6.1 72 444-515 49-127 (171)
214 3l9t_A Putative uncharacterize 48.8 1.1E+02 0.0036 30.2 10.5 135 447-602 72-211 (240)
215 3a6p_A Exportin-5; exportin-5, 48.5 1.7E+02 0.0058 35.9 14.9 217 447-681 13-278 (1204)
216 1lsh_A Lipovitellin (LV-1N, LV 46.7 4.3E+02 0.015 31.8 17.9 241 447-720 313-597 (1056)
217 1lsh_A Lipovitellin (LV-1N, LV 46.1 2.5E+02 0.0085 33.9 15.6 128 446-600 441-578 (1056)
218 3g2s_A C-terminal fragment of 46.0 32 0.0011 31.3 6.0 73 651-723 49-128 (149)
219 3zyq_A Hepatocyte growth facto 45.1 26 0.0009 34.2 5.6 73 651-723 46-120 (226)
220 1vdy_A Hypothetical protein (R 45.0 51 0.0018 29.6 7.0 75 651-725 50-134 (140)
221 1yuz_A Nigerythrin; rubrythrin 44.7 93 0.0032 29.7 9.3 28 237-284 169-196 (202)
222 1juq_A ADP-ribosylation factor 43.5 28 0.00097 32.4 5.3 72 651-722 51-129 (171)
223 1upk_A MO25 protein; transfera 43.1 3E+02 0.01 28.4 27.3 239 483-723 74-334 (341)
224 3gs3_A Symplekin, LD45768P; he 42.4 2.6E+02 0.009 27.6 13.2 145 444-596 14-171 (257)
225 3g2s_A C-terminal fragment of 41.9 39 0.0013 30.7 5.9 72 444-515 47-125 (149)
226 4abx_A DNA repair protein RECN 40.5 2.2E+02 0.0076 26.2 17.8 140 35-195 8-161 (175)
227 6rxn_A Rubredoxin; electron tr 39.0 9.4 0.00032 27.4 0.9 13 235-247 26-38 (46)
228 1lrv_A LRV, leucine-rich repea 37.2 17 0.00059 36.0 2.9 20 532-551 174-193 (244)
229 3o2t_A Symplekin; heat repeat, 34.0 4.4E+02 0.015 27.7 16.5 186 445-639 25-257 (386)
230 4rxn_A Rubredoxin; electron tr 34.0 12 0.00043 27.8 0.9 13 235-247 32-44 (54)
231 1e8j_A Rubredoxin; iron-sulfur 33.9 14 0.00048 27.2 1.2 14 234-247 31-44 (52)
232 2jne_A Hypothetical protein YF 33.2 3.5 0.00012 34.4 -2.4 41 239-285 32-72 (101)
233 3a6p_A Exportin-5; exportin-5, 32.4 3.8E+02 0.013 32.8 14.4 178 455-639 57-277 (1204)
234 2kw6_A Cyclin-dependent kinase 32.4 19 0.00064 27.5 1.6 41 44-84 16-56 (65)
235 1dvp_A HRS, hepatocyte growth 32.2 58 0.002 31.5 5.7 73 651-723 43-117 (220)
236 2nz7_A NOD1, caspase recruitme 32.0 23 0.00079 29.8 2.4 81 26-117 11-92 (98)
237 1l8d_A DNA double-strand break 31.2 11 0.00039 32.3 0.3 13 274-286 47-59 (112)
238 3zyq_A Hepatocyte growth facto 31.0 46 0.0016 32.5 4.7 72 444-515 44-117 (226)
239 3pst_A Protein DOA1; protein d 29.8 1.3E+02 0.0043 32.3 8.2 130 462-600 243-391 (425)
240 2kn9_A Rubredoxin; metalloprot 29.5 18 0.0006 29.4 1.1 15 234-248 55-69 (81)
241 1yk4_A Rubredoxin, RD; electro 29.5 16 0.00056 26.9 0.9 13 235-247 31-43 (52)
242 3gae_A Protein DOA1; UFD3, CDC 29.3 46 0.0016 33.1 4.5 129 462-600 71-219 (253)
243 2v3b_B Rubredoxin 2, rubredoxi 28.6 17 0.00058 27.1 0.8 13 235-247 32-44 (55)
244 1dvp_A HRS, hepatocyte growth 28.0 64 0.0022 31.2 5.2 72 444-515 41-114 (220)
245 2xqn_T Testin, TESS; metal-bin 27.1 34 0.0012 29.7 2.7 47 237-286 28-75 (126)
246 1dx8_A Rubredoxin; electron tr 26.2 20 0.00068 28.2 0.9 14 235-248 36-49 (70)
247 1m3v_A FLIN4, fusion of the LI 25.9 36 0.0012 29.5 2.7 52 237-289 30-84 (122)
248 1elk_A Target of MYB1; superhe 25.3 1.2E+02 0.0043 27.5 6.4 72 444-515 52-129 (157)
249 3l3f_X Protein DOA1, DOA1/UFD3 24.1 69 0.0024 33.6 4.8 129 462-599 180-327 (362)
250 2xjy_A Rhombotin-2; oncoprotei 24.1 49 0.0017 28.8 3.2 49 237-286 27-78 (131)
251 1s24_A Rubredoxin 2; electron 23.9 24 0.00081 29.0 0.9 13 235-247 64-76 (87)
252 3kat_A Nacht, LRR and PYD doma 23.3 96 0.0033 26.4 4.7 77 27-114 19-95 (107)
253 2lcq_A Putative toxin VAPC6; P 23.1 17 0.0006 33.5 -0.0 10 275-284 149-158 (165)
254 3o2t_A Symplekin; heat repeat, 23.0 6.3E+02 0.021 26.5 12.1 151 444-599 62-257 (386)
255 2m1l_A Cyclin-dependent kinase 22.7 36 0.0012 26.3 1.7 39 45-84 21-60 (69)
256 3gae_A Protein DOA1; UFD3, CDC 22.5 1.5E+02 0.005 29.3 6.7 101 580-683 101-221 (253)
257 1elk_A Target of MYB1; superhe 22.2 1.1E+02 0.0037 27.9 5.2 72 651-722 54-131 (157)
258 2ko5_A Ring finger protein Z; 21.8 50 0.0017 27.4 2.4 47 239-287 28-74 (99)
259 2o35_A Hypothetical protein DU 21.1 34 0.0012 28.6 1.3 13 260-272 42-54 (105)
260 1lko_A Rubrerythrin all-iron(I 20.6 25 0.00087 33.4 0.6 10 275-284 172-181 (191)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.2e-29 Score=272.43 Aligned_cols=265 Identities=26% Similarity=0.279 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhcCCc-hHHHHHHc
Q 004761 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNLSINDE-NKAMIAEA 527 (732)
Q Consensus 460 ~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs~~~~-~k~~i~~~ 527 (732)
+.+..|+++|.+++.+ +++|..|++.|++++|+.+|.+ .++.++.+|+++|.||+.++. ++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3456899999999976 7999999999999999999953 246789999999999998765 77777654
Q ss_pred -CCHHHHHHHHcCCCHHHHHHHHHHHHHhccC--chhHHHHHhcchHHHHHHh-hcCCCHHHHHHHHHHHHHhcc-Cchh
Q 004761 528 -GAIEPLIHVLKSGNGGAKENSAAALFSLSVL--EEYKAKIGRSGAVKALVDL-LGSGTLRGRKDAATALFNLSI-FHEN 602 (732)
Q Consensus 528 -g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~-~~~n 602 (732)
|++++|+.+|+++++++++.|+++|.+|+.. +++|..|.+.|+||.|+++ +++++..+++.|+.+|+||+. .++|
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 5699999999999999999999999999974 5789999999999999997 466789999999999999999 6688
Q ss_pred HHHHH-hhchHHHHHHhc-CCCh----HHHHHHHHHHHHHhC----ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHH
Q 004761 603 KARII-QAGAVKHLVDLM-DPST----GMVDKAVALLANLST----VGEGRLAIAREGGIPSLVEVVESGSQRGKENAAS 672 (732)
Q Consensus 603 ~~~lv-~~G~V~~Ll~lL-~~~~----~l~e~al~iL~nLa~----~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~ 672 (732)
+..++ ..|+++.|+++| +.+. .+++.|+++|.||+. .++++..+.+.|+++.|+++|++++...+++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 98888 799999999999 4332 589999999999985 8889999999999999999999999999999999
Q ss_pred HHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 673 ~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
+|++|+.++++.+..+++.|+++.|+.+++++++++++.|.++|.+|...++.
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999988899999999999999999999999999999999999999876544
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=271.54 Aligned_cols=262 Identities=27% Similarity=0.282 Sum_probs=235.5
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhcCCc-hHHHHHH-cCC
Q 004761 463 ASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNLSINDE-NKAMIAE-AGA 529 (732)
Q Consensus 463 ~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs~~~~-~k~~i~~-~g~ 529 (732)
-.|+++|.+++.+ +++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+.+++ ++..+.. .|+
T Consensus 166 ~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 3899999999765 8999999999999999999952 246789999999999998865 6666765 466
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccC--chhHHHHHhcchHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-CchhHHH
Q 004761 530 IEPLIHVLKSGNGGAKENSAAALFSLSVL--EEYKAKIGRSGAVKALVDLL-GSGTLRGRKDAATALFNLSI-FHENKAR 605 (732)
Q Consensus 530 l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~-~~~n~~~ 605 (732)
+++|+.+|.+++.++++.|+++|.+|+.. +++|..|.+.|+|+.|+++| ++++..+++.|+.+|+||+. +++|+..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999984 57899999999999999975 56789999999999999999 7789998
Q ss_pred HH-hhchHHHHHHhc-CCCh----HHHHHHHHHHHHHh----CChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 606 II-QAGAVKHLVDLM-DPST----GMVDKAVALLANLS----TVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 606 lv-~~G~V~~Ll~lL-~~~~----~l~e~al~iL~nLa----~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
++ ..|+++.|+.+| ..+. .+++.|+++|.||+ ..++++..+.+.|+++.|+++|.+++...+++|+++|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 88 799999999999 3332 58999999999998 48889999999999999999999999999999999999
Q ss_pred HHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 676 QLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 676 ~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
+|+.++++.+..+++.|+++.|+.+++++++++++.|.++|++|....+.
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 99988899999999999999999999999999999999999999877643
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=1.6e-28 Score=275.95 Aligned_cols=276 Identities=22% Similarity=0.246 Sum_probs=240.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
.++.||+.|++++++.+..|+..|++++.+++.++..+.+.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 479999999999999999999999999988888898999999999999999999999999999999999987 7899999
Q ss_pred HHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc--------CC--------CHHHHH
Q 004761 525 AEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG--------SG--------TLRGRK 587 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~ 587 (732)
++.|++++|+.+|. ++++++++.|+++|++|+..+++|..+.+ |++|.|+.+|. ++ ++.+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999999999999 99999999993 22 356677
Q ss_pred HHHHHHHHhccCchhHHHHHhh-chHHHHHHhc-C------CChHHHHHHHHHHHHHhCCh-------------------
Q 004761 588 DAATALFNLSIFHENKARIIQA-GAVKHLVDLM-D------PSTGMVDKAVALLANLSTVG------------------- 640 (732)
Q Consensus 588 ~Al~aL~nLs~~~~n~~~lv~~-G~V~~Ll~lL-~------~~~~l~e~al~iL~nLa~~~------------------- 640 (732)
.|+++|+|||.+++++..+++. |+++.|+.+| + .+..+++.|+.+|.||+...
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998899999997 9999999999 3 35568899999999997421
Q ss_pred --------------------------------hhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHh---
Q 004761 641 --------------------------------EGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCLHSPKF--- 684 (732)
Q Consensus 641 --------------------------------~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~--- 684 (732)
.+.+.+.+.++++.|+.+|.+ .++..++.|+++|.++|.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 122233445678899999876 46899999999999999865332
Q ss_pred H-HHHH-hCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 685 C-TLVL-QEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 685 ~-~~v~-~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
. +.++ +.|++|.|+.++.+++.++++.|.++|+++...
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 1 3344 689999999999999999999999999999764
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.7e-27 Score=271.08 Aligned_cols=279 Identities=22% Similarity=0.239 Sum_probs=240.2
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC--CchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN--DENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~~k 521 (732)
...++.||++|.+++++.+..|+..|++++..+.++|..+++.|+||.|+.+|++++..+++.|+++|.||+.. ++||
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 55689999999999999999999999999998999999999999999999999999999999999999999984 7899
Q ss_pred HHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc------------------CCC
Q 004761 522 AMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG------------------SGT 582 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~------------------~~~ 582 (732)
..+++.|++++|+.+|.+ ++.+++++|+++|++|+..+++|..|+. +++|+|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999997 5788999999999999999999999995 57999999872 125
Q ss_pred HHHHHHHHHHHHHhccCch-hHHHHHh-hchHHHHHHhc-C------CChHHHHHHHHHHHHHhCChh------------
Q 004761 583 LRGRKDAATALFNLSIFHE-NKARIIQ-AGAVKHLVDLM-D------PSTGMVDKAVALLANLSTVGE------------ 641 (732)
Q Consensus 583 ~~~~~~Al~aL~nLs~~~~-n~~~lv~-~G~V~~Ll~lL-~------~~~~l~e~al~iL~nLa~~~~------------ 641 (732)
..+++.|+.+|.||+..++ +|..+++ .|+++.|+.+| + .+...++.|+++|.||+...+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 7899999999999999875 5888887 57788999998 2 466789999999999987521
Q ss_pred --------------hHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCh----HhHHHHHhCCCHHHHHHchh
Q 004761 642 --------------GRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQLCLHSP----KFCTLVLQEGAVPPLVGLSQ 702 (732)
Q Consensus 642 --------------~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~----~~~~~v~~~G~i~~L~~Ll~ 702 (732)
|.+.+.+.++++.|+.+|. +.++.++|+|+++|.+||.++. ..+..+.++|+++.|+.|+.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 1112223345678899996 4689999999999999998652 22334455789999999999
Q ss_pred cCChHHHHHHHHHHHHhhccc
Q 004761 703 SGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 703 ~g~~~~k~kA~~lL~~l~~~~ 723 (732)
++++.+++.|.++|++|....
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhCCh
Confidence 999999999999999997653
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=2.2e-26 Score=258.63 Aligned_cols=282 Identities=21% Similarity=0.230 Sum_probs=245.4
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCc
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
....+.|+.||++|++++++.+..|+++|++++..++++|..+++.|+||.|+.+|. ++++.+++.|+++|.||+.+++
T Consensus 40 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~ 119 (457)
T 1xm9_A 40 VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119 (457)
T ss_dssp HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH
Confidence 445788999999999999999999999999999988999999999999999999999 8899999999999999999988
Q ss_pred hHHHHHHcCCHHHHHHHHc--------CC--------CHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCC-
Q 004761 520 NKAMIAEAGAIEPLIHVLK--------SG--------NGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSG- 581 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~--------~~--------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~- 581 (732)
+|..+++ |++++|+.+|. ++ +.++..+|+++|+||+..++++..+.+. |+++.|+.+|+++
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 9999999 99999999993 22 3456669999999999988889999987 9999999888630
Q ss_pred --------------------------------------------------------------------------------
Q 004761 582 -------------------------------------------------------------------------------- 581 (732)
Q Consensus 582 -------------------------------------------------------------------------------- 581 (732)
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence
Q ss_pred ------------------CHHHHHHHHHHHHHhccCchh------HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH
Q 004761 582 ------------------TLRGRKDAATALFNLSIFHEN------KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL 636 (732)
Q Consensus 582 ------------------~~~~~~~Al~aL~nLs~~~~n------~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL 636 (732)
++..++.|+++|.||+..+.. +..+.++|++|.|+++| +++..++..|+++|.||
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 244566788999999875432 22334689999999999 78899999999999999
Q ss_pred hCChhhHHHHHHcCcHHHHHHHHhcCC------HHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHH
Q 004761 637 STVGEGRLAIAREGGIPSLVEVVESGS------QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAK 709 (732)
Q Consensus 637 a~~~~~r~~i~~~~~I~~Lv~lL~~~s------~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k 709 (732)
+.+++.+..|.. ++++.|+++|..++ ++....++++|.+++.++++....+.+.|+++.|+.++.++ +++++
T Consensus 359 s~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 359 SRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp HTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred hcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 998888776654 79999999998763 46788999999999998899999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcccc
Q 004761 710 EKAQQLLSHFRNQRE 724 (732)
Q Consensus 710 ~kA~~lL~~l~~~~~ 724 (732)
++|..+|.++..+++
T Consensus 438 ~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 438 EAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHcchh
Confidence 999999998876554
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=1.5e-26 Score=271.69 Aligned_cols=281 Identities=16% Similarity=0.190 Sum_probs=251.3
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-----------------------------hhH---HHHHhcCC
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-----------------------------ENR---MIIGNCGA 488 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-----------------------------~~r---~~i~~~G~ 488 (732)
..+.+.++.||++|++++...+..|++.|.+++...+ .++ ..++++|+
T Consensus 417 v~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa 496 (810)
T 3now_A 417 IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496 (810)
T ss_dssp HHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred HHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence 4456889999999999999999999999999997542 123 67789999
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH--
Q 004761 489 IPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG-- 566 (732)
Q Consensus 489 I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-- 566 (732)
+|.|+.+|+++++.++++|+++|.||+.+++++..+++.|++++|+.+|.+++...+.+|+++|.+|+...+....+.
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 999999999999999999999999999988899999999999999999999999999999999999987544433322
Q ss_pred -hcchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh
Q 004761 567 -RSGAVKALVDLLGSG-TLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG 642 (732)
Q Consensus 567 -~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~ 642 (732)
..|++|+|+++|.++ +...+..|+.||.||+..+ +++..++++|+++.|+.+| +.+..++..|+.+|+||+.+++.
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~ 656 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV 656 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHH
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHH
Confidence 247999999999865 4556678999999999975 6888999999999999999 88888999999999999999998
Q ss_pred HHHHHH-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh-CCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 643 RLAIAR-EGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ-EGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 643 r~~i~~-~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~-~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+..+.+ .|+++.|+.++.+.+...++.|+++|.+++.+++..++.+++ .|+++.|+.++.+++.++++.|.++|.++.
T Consensus 657 ~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888885 678999999999999999999999999999988888899998 899999999999999999999999999986
Q ss_pred c
Q 004761 721 N 721 (732)
Q Consensus 721 ~ 721 (732)
.
T Consensus 737 ~ 737 (810)
T 3now_A 737 N 737 (810)
T ss_dssp T
T ss_pred h
Confidence 5
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=256.56 Aligned_cols=281 Identities=20% Similarity=0.209 Sum_probs=243.2
Q ss_pred cccCchHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccChhhHHHHHhcCCH----------HHHHHhhcc
Q 004761 441 VTTTPYVKKLIEDLNST------------SNEIQASAAAELRLLAKHNMENRMIIGNCGAI----------PPLLSLLYS 498 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I----------~~Lv~lL~s 498 (732)
....|.++.||++|+.. +++.+.+|+++|.+++..+++......+.|++ +.++.++.+
T Consensus 66 ~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 66 MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 45578899999999863 37999999999999999888888777777777 666777765
Q ss_pred CC--HH-----HH-------HHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcC-----------CCHHHHHHHHHHHH
Q 004761 499 EA--QL-----TQ-------EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKS-----------GNGGAKENSAAALF 553 (732)
Q Consensus 499 ~~--~~-----v~-------~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~-----------~~~e~~~~Aa~~L~ 553 (732)
.. .+ +. .+|+++|.|++.++++|..|.+.|++++|+.+|.. .++.++.+|+++|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 42 11 33 39999999999999999999999999999999952 23678999999999
Q ss_pred HhccCch-hHHHHHhc-chHHHHHHhhcCCCHHHHHHHHHHHHHhccC--chhHHHHHhhchHHHHHHhc--CCChHHHH
Q 004761 554 SLSVLEE-YKAKIGRS-GAVKALVDLLGSGTLRGRKDAATALFNLSIF--HENKARIIQAGAVKHLVDLM--DPSTGMVD 627 (732)
Q Consensus 554 ~Ls~~~~-~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e 627 (732)
+|+..++ ++..+... |+||.|+.+|+++++.+++.|+++|.||+.. ++++..+++.|+++.|+++| +.+..+.+
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 9998665 67777654 7799999999999999999999999999985 56899999999999999986 56788999
Q ss_pred HHHHHHHHHhC-ChhhHHHHH-HcCcHHHHHHHHhcCCH----HHHHHHHHHHHHHhc---CChHhHHHHHhCCCHHHHH
Q 004761 628 KAVALLANLST-VGEGRLAIA-REGGIPSLVEVVESGSQ----RGKENAASILLQLCL---HSPKFCTLVLQEGAVPPLV 698 (732)
Q Consensus 628 ~al~iL~nLa~-~~~~r~~i~-~~~~I~~Lv~lL~~~s~----~~~e~A~~~L~~L~~---~~~~~~~~v~~~G~i~~L~ 698 (732)
.|+.+|+||+. +++++..+. ..|+++.|+++|.++++ ..+++|+++|.+|+. .+++++..+.+.|+++.|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 99999999998 778888887 68999999999987654 489999999999997 6889999999999999999
Q ss_pred HchhcCChHHHHHHHHHHHHhhc
Q 004761 699 GLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 699 ~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.++.+++..+++.|.++|.++..
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHcCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999999973
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=9.5e-26 Score=256.77 Aligned_cols=282 Identities=22% Similarity=0.259 Sum_probs=238.6
Q ss_pred ccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcC
Q 004761 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKH-NMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~ 517 (732)
.....+.|+.||++|++++.+++..|+++|++|+.. +.++|..|++.|+|+.|+.+|++ .+..++++|+.+|+||+.+
T Consensus 85 ~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 85 DVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp HHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 355578899999999999999999999999999985 68999999999999999999997 6889999999999999999
Q ss_pred CchHHHHHHcCCHHHHHHHHc------------------CCCHHHHHHHHHHHHHhccCc-hhHHHHHhc-chHHHHHHh
Q 004761 518 DENKAMIAEAGAIEPLIHVLK------------------SGNGGAKENSAAALFSLSVLE-EYKAKIGRS-GAVKALVDL 577 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~------------------~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~-g~i~~Lv~l 577 (732)
+.+|..|++ +++++|+.+|. ..+.+++++|+++|+||+... +++..|.+. |+++.|+.+
T Consensus 165 ~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~ 243 (584)
T 3l6x_A 165 DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243 (584)
T ss_dssp GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence 999999986 57999999771 124789999999999999876 447777765 666677776
Q ss_pred hcC--------------------------------------------------------------------------CCH
Q 004761 578 LGS--------------------------------------------------------------------------GTL 583 (732)
Q Consensus 578 L~~--------------------------------------------------------------------------~~~ 583 (732)
|++ .++
T Consensus 244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~ 323 (584)
T 3l6x_A 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323 (584)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH
Confidence 542 124
Q ss_pred HHHHHHHHHHHHhccCc-----hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHH
Q 004761 584 RGRKDAATALFNLSIFH-----ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE 657 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~-----~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~ 657 (732)
.+++.|+.||.|||... .++..+.+.|+++.|+++| ..+..+++.|+++|.||+.++..+..| ..|+++.||.
T Consensus 324 ~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~ 402 (584)
T 3l6x_A 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVK 402 (584)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHH
Confidence 44566777777776543 2333445579999999999 788899999999999999998888766 6789999999
Q ss_pred HHhcC--------CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC--ChHHHHHHHHHHHHhhccc
Q 004761 658 VVESG--------SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG--TPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 658 lL~~~--------s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g--~~~~k~kA~~lL~~l~~~~ 723 (732)
+|.++ +.+....|+++|.+|+..++++.+.+.+.|+++.|+.++.++ .+++++.|..+|.+|..+.
T Consensus 403 LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 99876 578899999999999999999999999999999999999987 7899999999999997543
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=5e-26 Score=259.31 Aligned_cols=283 Identities=21% Similarity=0.266 Sum_probs=252.7
Q ss_pred cccccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 439 DEVTTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 439 ~~~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
+.....|.|+.||++|++ +++++|..|+++|.+++..+++++..+++.|+||.|+.+|.+++..+++.|+++|.||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 345668899999999974 5689999999999999999999999999999999999999999999999999999999987
Q ss_pred -CchHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCchhHHHH-HhcchHHHHHHhhcCCCHHHHHHHH
Q 004761 518 -DENKAMIAEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEEYKAKI-GRSGAVKALVDLLGSGTLRGRKDAA 590 (732)
Q Consensus 518 -~~~k~~i~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~i-~~~g~i~~Lv~lL~~~~~~~~~~Al 590 (732)
+.++..+.+.|++++|+.+|...+ .....+++++|.+++........+ ...|++|.|+.+|.++++.++..|+
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~ 253 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Confidence 456888899999999999998764 346789999999999866544333 3458999999999999999999999
Q ss_pred HHHHHhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHH
Q 004761 591 TALFNLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGK 667 (732)
Q Consensus 591 ~aL~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~ 667 (732)
++|.+|+..+.++ ..+++.|+++.|+++| +.+..++..++.+|+|++... ..+..+++.|+++.|+.++.++++..+
T Consensus 254 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~ 333 (510)
T 3ul1_B 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333 (510)
T ss_dssp HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHH
T ss_pred HHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHH
Confidence 9999999977655 4567899999999999 788899999999999997755 456788899999999999999999999
Q ss_pred HHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+.|+++|.+++.+++.....+.+.|+++.|+.++.+++.++|+.|.++|.++..
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999998864
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=1.2e-25 Score=257.28 Aligned_cols=283 Identities=21% Similarity=0.255 Sum_probs=253.8
Q ss_pred cccccCchHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 439 DEVTTTPYVKKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 439 ~~~~~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
+.....|.|+.||++|. +.+++.+..|+++|.+++.++.+++..+++.|+||.|+.+|.+++..+++.|+++|.||+.+
T Consensus 113 ~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 34566889999999997 45689999999999999999999999999999999999999999999999999999999987
Q ss_pred -CchHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCchhHHH-HHhcchHHHHHHhhcCCCHHHHHHHH
Q 004761 518 -DENKAMIAEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEEYKAK-IGRSGAVKALVDLLGSGTLRGRKDAA 590 (732)
Q Consensus 518 -~~~k~~i~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~-i~~~g~i~~Lv~lL~~~~~~~~~~Al 590 (732)
+.++..+.+.|++++|+.+|...+ .....+++++|.+++........ ....|++|.|+.+|.++++.++..|+
T Consensus 193 ~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~ 272 (529)
T 3tpo_A 193 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 272 (529)
T ss_dssp CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHH
Confidence 567889999999999999998654 35678999999999986654433 33458999999999999999999999
Q ss_pred HHHHHhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHH
Q 004761 591 TALFNLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGK 667 (732)
Q Consensus 591 ~aL~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~ 667 (732)
++|.+|+..+.++ ..++..|+++.|+++| +.+..++..++.+|+|++.+. ..+..+.+.|+++.|+.++.++++..+
T Consensus 273 ~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~ 352 (529)
T 3tpo_A 273 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 352 (529)
T ss_dssp HHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHH
T ss_pred HHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHH
Confidence 9999999977654 4677899999999999 888999999999999998754 567788899999999999999999999
Q ss_pred HHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
..|+++|.+++.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999998864
No 11
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=5e-26 Score=246.16 Aligned_cols=245 Identities=22% Similarity=0.237 Sum_probs=219.6
Q ss_pred cccccCchHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccCCHHHHHH
Q 004761 439 DEVTTTPYVKKLIEDLNS-----------TSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSEAQLTQEH 506 (732)
Q Consensus 439 ~~~~~~~~i~~Lv~~L~s-----------~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~~~~v~~~ 506 (732)
+...+.+.++.|+++|.+ .+++.+..|++.|++++..+..+|..+... |+||.|+.+|+++++++++.
T Consensus 67 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~ 146 (354)
T 3nmw_A 67 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 146 (354)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHH
Confidence 446668889999999952 246789999999999999988899888755 56999999999999999999
Q ss_pred HHHHHHHhhcC--CchHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhcc-CchhHHHHH-hcchHHHHHHhhcCC
Q 004761 507 AVTALLNLSIN--DENKAMIAEAGAIEPLIHV-LKSGNGGAKENSAAALFSLSV-LEEYKAKIG-RSGAVKALVDLLGSG 581 (732)
Q Consensus 507 A~~~L~nLs~~--~~~k~~i~~~g~l~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~-~~g~i~~Lv~lL~~~ 581 (732)
|+++|.||+.. +.+|..+.+.|++++|+.+ +++++.++++.|+++|++|+. .+++|..|. ..|+++.|+.+|+++
T Consensus 147 A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 147 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 226 (354)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence 99999999985 4689999999999999997 466789999999999999998 668888888 679999999999876
Q ss_pred CH----HHHHHHHHHHHHhcc----CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHh-CChhhHHHHHHcCc
Q 004761 582 TL----RGRKDAATALFNLSI----FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLS-TVGEGRLAIAREGG 651 (732)
Q Consensus 582 ~~----~~~~~Al~aL~nLs~----~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa-~~~~~r~~i~~~~~ 651 (732)
+. .+++.|+.+|.||+. .++++..++++|+++.|+++| +.+..+++.|+++|.||+ ..++.+..+.+.|+
T Consensus 227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 54 589999999999996 778999999999999999999 778899999999999999 47889999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
++.|+++++++++..++.|+++|.+|+.+++.
T Consensus 307 i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999997665
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=3.9e-25 Score=259.71 Aligned_cols=282 Identities=20% Similarity=0.181 Sum_probs=251.5
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
....|.++.|+++|+++++.++..|+++|.+++. +.++|..+.+.|++|+|+.+|.+++...++.|+++|.||+.+.+.
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 4556889999999999999999999999999996 467999999999999999999999999999999999999875443
Q ss_pred HHHH---HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 521 KAMI---AEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 521 k~~i---~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
...+ ...|++++|+.+|.++ +...+..|+++|.||+.. ++++..+.+.|+++.|+.+|.++++.+++.|+.+|.|
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3222 1246999999999866 345567899999999986 5778889999999999999999999999999999999
Q ss_pred hccCchhHHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHH-cCcHHHHHHHHhcCCHHHHHHHH
Q 004761 596 LSIFHENKARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAR-EGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 596 Ls~~~~n~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~-~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|+.+++.+..++. .|+++.|+.++ +.+..++..|+++|+||+. ++.....+++ .|+++.|+.++.+++.+.++.|+
T Consensus 650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~ 729 (810)
T 3now_A 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729 (810)
T ss_dssp HTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence 9999999988886 79999999999 7788999999999999998 6777888888 89999999999999999999999
Q ss_pred HHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC---ChHHHHHHHHHHHHhhccc
Q 004761 672 SILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG---TPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g---~~~~k~kA~~lL~~l~~~~ 723 (732)
++|.|++.++++....+.+.|+++.|+.+++.. ++++.+.|..+|+.+-++.
T Consensus 730 ~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999999998888999999999999999999765 5789999999999986554
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=4.3e-24 Score=243.99 Aligned_cols=282 Identities=24% Similarity=0.260 Sum_probs=255.0
Q ss_pred cccCchHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-C
Q 004761 441 VTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-D 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~ 518 (732)
....+.++.|++.|.+++ ++++..|+++|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh
Confidence 344678999999999886 99999999999999999899999999999999999999999999999999999999977 4
Q ss_pred chHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 519 ENKAMIAEAGAIEPLIHVL-KSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
.++..+...|++++|+.+| ...+..++.+|+++|.+|+............|+++.|+.+|.++++.++..|+.+|.+|+
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5688888999999999999 566899999999999999986544444555799999999999999999999999999999
Q ss_pred cCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcC-CHHHHHHHHHH
Q 004761 598 IFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESG-SQRGKENAASI 673 (732)
Q Consensus 598 ~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~-s~~~~e~A~~~ 673 (732)
...+++ ..+++.|+++.|+.+| +.+..++..|+.+|+||+.. +.....+.+.|+++.|+.+|.++ ++..+..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 877665 5778899999999999 77889999999999999984 45667788899999999999998 99999999999
Q ss_pred HHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 674 LLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 674 L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
|.+++.+++.....+++.|+++.|+.++.++++.+++.|.++|.++...
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999998888888999999999999999999999999999999998654
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.1e-23 Score=215.50 Aligned_cols=242 Identities=26% Similarity=0.314 Sum_probs=224.2
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE-NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~-~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~ 564 (732)
|+++.|+.+|.++++.++..|+++|.+++.... ++..+.+.|+++.|+.+|++++.+++..|+++|.+++.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 679999999999999999999999999988764 888999999999999999999999999999999999987 788999
Q ss_pred HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-
Q 004761 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLS-IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE- 641 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs-~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~- 641 (732)
+...|+++.|+.+|+++++.++..|+.+|.||+ ..++++..+++.|+++.|++++ +.+..++..++++|++|+...+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5677888999999999999999 7788999999999999998554
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 642 ~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.+..+.+.|+++.|+.++.++++..+..|+++|.+++.+++.....+.+.|+++.|+.+++++++.+++.|.++|.++..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 45788899999999999999999999999999999999888999999999999999999999999999999999999988
Q ss_pred cccCCcC
Q 004761 722 QREGSTG 728 (732)
Q Consensus 722 ~~~~~~~ 728 (732)
.......
T Consensus 242 ~~~~~~~ 248 (252)
T 4hxt_A 242 GGWLEHH 248 (252)
T ss_dssp TCBCCC-
T ss_pred CCCcccc
Confidence 7665543
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1e-23 Score=215.62 Aligned_cols=237 Identities=29% Similarity=0.336 Sum_probs=220.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
.++.|++.|.+++++.+..|++.|.+++..+++++..+.+.|+++.|+.+|.+++..++..|+++|.|++.+ +.++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 589999999999999999999999999999988999999999999999999999999999999999999987 6788999
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-h
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLS-VLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-N 602 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n 602 (732)
.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+...|+++.|+++|+++++.++..|+.+|.||+...+ +
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 567888889999999999999999999999999999999998654 5
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
+..+++.|+++.|+.++ +++..++..|+.+|.+|+. .++.+..+.+.|+++.|++++.++++..++.|+++|.+|+..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 57889999999999999 7788999999999999998 456678888999999999999999999999999999999985
Q ss_pred Ch
Q 004761 681 SP 682 (732)
Q Consensus 681 ~~ 682 (732)
.+
T Consensus 243 ~~ 244 (252)
T 4hxt_A 243 GW 244 (252)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=1.9e-23 Score=239.10 Aligned_cols=281 Identities=21% Similarity=0.224 Sum_probs=250.2
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhh
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA-----QLTQEHAVTALLNLS 515 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~-----~~v~~~A~~~L~nLs 515 (732)
....|.|+.|+++|.+++.+++..|+++|.+++.+++++|..+.+.|++++|+.+|...+ ..++..++++|.|++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999999999999999998653 457889999999999
Q ss_pred cCCchH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh-HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 516 INDENK-AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY-KAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 516 ~~~~~k-~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
.+.... ......++++.|+.+|.+++++++..|+++|.+++..... ...+...|+++.|+.+|.+.+..++..|+.+|
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 875443 3334567899999999999999999999999999986654 55667779999999999999999999999999
Q ss_pred HHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Q 004761 594 FNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENA 670 (732)
Q Consensus 594 ~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A 670 (732)
.||+... .++..+++.|+++.|+.+| +++..++..|+++|.||+.+. ..+..+.+.|+++.|+.++.+++..++..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 9998865 4667889999999999999 888899999999999998754 566788899999999999999999999999
Q ss_pred HHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 671 ASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 671 ~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+++|.+++.+ +++.+..+++.|+++.|+.++.+.++++...+..+|.++-.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999874 67888899999999999999999999999999998888754
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.92 E-value=2.9e-23 Score=236.49 Aligned_cols=281 Identities=21% Similarity=0.227 Sum_probs=248.9
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhh
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA-----QLTQEHAVTALLNLS 515 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~-----~~v~~~A~~~L~nLs 515 (732)
..+.+.|+.|++.|++++.+++..|+++|.+++.+++++|..+.+.|+++.|+.+|.+.+ ..++..++++|.|++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 455788999999999999999999999999999999999999999999999999998654 457889999999999
Q ss_pred cCCchH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh-HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 516 INDENK-AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY-KAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 516 ~~~~~k-~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
.+.... ......++++.|+.+|.+++.+++..|+++|.+|+..... ...+...|+++.|+.+|.+.+..++..|+.+|
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 875443 3333467899999999999999999999999999986655 45566779999999999999999999999999
Q ss_pred HHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Q 004761 594 FNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENA 670 (732)
Q Consensus 594 ~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A 670 (732)
.||+... .++..+++.|+++.|+.+| +++..++..|+++|.||+.+ ++.+..+.+.|+++.|+.++.+++..++..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9998865 4667889999999999999 78889999999999999875 4567788899999999999999999999999
Q ss_pred HHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 671 ASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 671 ~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+++|.+++.+ +++.+..+++.|+++.|+.++.+.++++...+..+|.++-.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999884 67788889999999999999999999999999998887744
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=3.6e-23 Score=236.35 Aligned_cols=278 Identities=20% Similarity=0.194 Sum_probs=251.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhhcC-Cch
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYSEA-QLTQEHAVTALLNLSIN-DEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s~~-~~v~~~A~~~L~nLs~~-~~~ 520 (732)
...++.|++.|.+++++.+..|+..|+.++.... .....+.+.|+++.|+.+|.+++ +.++..|+++|.|++.+ +.+
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3458999999999999999999999999976554 66788889999999999999876 99999999999999986 567
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhh-cCCCHHHHHHHHHHHHHhcc
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLL-GSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~ 598 (732)
+..+.+.|+++.|+.+|.+++++++..|+++|.+|+.. +.++..+...|+++.|+.+| .+.++.++..|+++|.+|+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999975 45688888889999999999 56789999999999999999
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~ 676 (732)
..++....+..|+++.|+.+| +.+..+...++++|.+|+.....+ ..+.+.|+++.|+.+|.++++..++.|+++|.+
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 866555666799999999999 788999999999999999877655 577889999999999999999999999999999
Q ss_pred HhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhc
Q 004761 677 LCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 677 L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~ 721 (732)
++.+++.....+++.|+++.|+.++.++ ++.+++.|.++|.++..
T Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 9998888889999999999999999999 89999999999999975
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=9.3e-24 Score=216.94 Aligned_cols=235 Identities=25% Similarity=0.315 Sum_probs=215.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc-CCchHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI-NDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~~k~~ 523 (732)
...+.+++.|.+++++++..|++.|+.+...+.+++..+.+.|+++.|+.+|.++++.++..|+++|.|++. ++.++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 347899999999999999999999977666577889999999999999999999999999999999999998 4678899
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-h
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-E 601 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~ 601 (732)
+.+.|+++.|+.+|++++++++..|+++|.+|+..+.++ ..+...|+++.|+.+|+++++.++..|+.+|.||+... +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999988888 78888899999999999999999999999999999855 5
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
++..+++.|+++.|+++| +++..++..|+.+|.+|+. .++.+..+.+.|+++.|++++.++++..++.|+++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 667888999999999999 7788999999999999985 55677888999999999999999999999999999999986
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=6.2e-23 Score=234.65 Aligned_cols=282 Identities=22% Similarity=0.225 Sum_probs=254.8
Q ss_pred cccCchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-C
Q 004761 441 VTTTPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-D 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~ 518 (732)
....+.++.|++.|.++ ++.++..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +
T Consensus 126 ~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 205 (530)
T ss_dssp HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc
Confidence 34467899999999987 899999999999999998888999999999999999999999999999999999999987 4
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
.++..+...|++++|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+
T Consensus 206 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 67888889999999999999988999999999999999764 44445556799999999999999999999999999999
Q ss_pred cCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 598 IFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 598 ~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
... +....+++.|+++.|+.+| +.+..++..|+.+|.+|+.. +.....+.+.|+++.|+.+|.++++..+..|+++|
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 865 4567788899999999999 78889999999999999975 44567778889999999999999999999999999
Q ss_pred HHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
.+++.++++....+++.|+++.|+.++.++++.++..|.++|.++...
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999998888888899999999999999999999999999999998654
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=5.3e-23 Score=211.23 Aligned_cols=235 Identities=25% Similarity=0.312 Sum_probs=217.7
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHh-hcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nL-s~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~ 564 (732)
...+.++..|++++++++..|+++|.++ +.++.++..+.+.|+++.|+.+|++++++++..|+++|.+++. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5688999999999999999999999775 4456678889999999999999999999999999999999998 6788999
Q ss_pred HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-h
Q 004761 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-E 641 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~ 641 (732)
+...|+++.|+.+|+++++.+++.|+.+|.||+..++++ ..+++.|+++.|+++| +++..++..|+++|.+|+... +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999988 8899999999999999 778899999999999999854 5
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 642 ~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.+..+.+.|+++.|++++.++++..++.|+++|.+++.+++.....+.+.|+++.|+.+++++++.+++.|.++|.++..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 66778889999999999999999999999999999999889999999999999999999999999999999999998854
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=3.2e-22 Score=228.73 Aligned_cols=278 Identities=20% Similarity=0.199 Sum_probs=250.5
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCC-ch
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYSE-AQLTQEHAVTALLNLSIND-EN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~-~~ 520 (732)
...++.|++.|.+++++.+..|+..|+.+.... ..++..+.+.|+++.|+.+|.++ ++.++..|+++|.+++... .+
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 456899999999999999999999999986542 35567788899999999999987 8999999999999999864 56
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 599 (732)
+..+...|+++.|+.+|.+++++++..|+++|.+|+.. +.++..+...|+++.|+.+|.+.++.++..|+++|.+|+.+
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 77888999999999999999999999999999999986 46788888889999999999998999999999999999987
Q ss_pred c-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004761 600 H-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676 (732)
Q Consensus 600 ~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~ 676 (732)
. ++.......|+++.|+.+| +.+..+...++++|.+|+... +....+.+.|+++.|+.++.++++..++.|+++|.+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 6 5556667789999999999 778899999999999999764 567778889999999999999999999999999999
Q ss_pred HhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 677 LCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 677 L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++.+++.....+++.|+++.|+.+++++++.+++.|.++|.++..
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999888888889999999999999999999999999999999875
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=6.2e-22 Score=220.34 Aligned_cols=279 Identities=20% Similarity=0.212 Sum_probs=248.7
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCC--c
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSIND--E 519 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~--~ 519 (732)
..+.++.|++.|++++++++..|++.|.+++..++.++..+.+.|+++.|+.++.+ .+..++..|+++|.|++.+. .
T Consensus 105 ~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 184 (450)
T 2jdq_A 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184 (450)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 35789999999999999999999999999999988899999999999999999995 68999999999999999763 2
Q ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
.+..+. .++++.|+.+|.+++.+++..++++|.+|+... +.+..+...|+++.|+.+|.+.++.++..|+.+|.+|+.
T Consensus 185 ~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 185 PEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp CCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 333333 789999999999999999999999999999854 566677778999999999999999999999999999998
Q ss_pred Cchh-HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 599 FHEN-KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 599 ~~~n-~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
..+. ...+++.|+++.|+.+| +++..++..|+++|.+++. .++....+.+.++++.|+.++.++++.++..|+++|.
T Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 264 GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7654 45678899999999999 7788999999999999996 5566778888899999999999999999999999999
Q ss_pred HHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 676 QLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 676 ~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
+++.+ +++....+++.|+++.|+.++.++++++++.|..+|..+...
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99985 677888888999999999999999999999999999888653
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=3.9e-22 Score=221.97 Aligned_cols=276 Identities=22% Similarity=0.219 Sum_probs=248.2
Q ss_pred chHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-chHH
Q 004761 445 PYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-ENKA 522 (732)
Q Consensus 445 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~~k~ 522 (732)
+.++.|++.|+++ +++++..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.|++.+. .++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 7899999999988 8999999999999999988888888889999999999999999999999999999999875 5788
Q ss_pred HHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004761 523 MIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 599 (732)
.+.+.|+++.|+.+|.+ .+.+++..|+++|.+++... ..+..+ ..++++.|+.++.++++.++..|+++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 67999999999999999653 222222 268999999999999999999999999999986
Q ss_pred c-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004761 600 H-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676 (732)
Q Consensus 600 ~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~ 676 (732)
. +++..++..|+++.|+.+| +.+..++..|+.+|.+|+...+ ....+.+.|+++.|+.++.++++..+..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 5677888899999999999 7788999999999999998655 45567788999999999999999999999999999
Q ss_pred HhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 677 LCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 677 L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++.+++.....+++.|+++.|+.++.++++++++.|.++|.++..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888889999999999999999999999999999999864
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=1.2e-21 Score=222.92 Aligned_cols=278 Identities=23% Similarity=0.235 Sum_probs=239.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSE-AQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~k 521 (732)
.+.++.|+++|+++++.++..|+..|.+++... .++..+... |+++.|+.+|.++ ++.++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 667999999999999999999999999999765 577666654 8999999999754 8999999999999999988899
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF- 599 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~- 599 (732)
..+.+.|+++.|+.+|++++++++..|+++|.+|+.. ++.+..+...|+++.|+.+|++++.+.+..++.+|.+|+..
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999986 46677888889999999999999999999999999999874
Q ss_pred chhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHH---------------------
Q 004761 600 HENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLV--------------------- 656 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv--------------------- 656 (732)
++++..+++.|+++.|+.+| .........++.+|.+|+.+++.+..+.+.|+++.|+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 57888888889999999988 4455667778888888888888888777777665555
Q ss_pred ------------------HHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC--ChHHHHHHHHHH
Q 004761 657 ------------------EVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG--TPRAKEKAQQLL 716 (732)
Q Consensus 657 ------------------~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g--~~~~k~kA~~lL 716 (732)
+++.+.++..++.|+++|.+|+.++++.+..+.+.|+++.|+.++.+. .+.++..|..+|
T Consensus 255 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 444556777888899999999888888899999999999999999863 378999999999
Q ss_pred HHhhcc
Q 004761 717 SHFRNQ 722 (732)
Q Consensus 717 ~~l~~~ 722 (732)
.++...
T Consensus 335 ~nl~~~ 340 (529)
T 1jdh_A 335 RHLTSR 340 (529)
T ss_dssp HHHTSS
T ss_pred HHHHcC
Confidence 998653
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=1.7e-21 Score=228.26 Aligned_cols=278 Identities=23% Similarity=0.226 Sum_probs=245.1
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCch
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSE-AQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~ 520 (732)
..+.++.|+++|+++++.++..|+..|.+++... .++..+... |+++.|+.+|.+. ++.++..|+.+|.+|+.++++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3567999999999999999999999999999876 467666654 8999999999865 899999999999999999889
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI- 598 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~- 598 (732)
+..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. +..+..+...|+++.|+.+|++++++.+..++.+|.+|+.
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999975 4667778888999999999999999988999999999997
Q ss_pred CchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHH------------------
Q 004761 599 FHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEV------------------ 658 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~l------------------ 658 (732)
+++++..+++.|+++.|+.+| .......+.++.+|.+|+.+++.+..+.+.|+++.|+.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 678999999999999999999 345677889999999999999999999888877766554
Q ss_pred ---------------------HhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-C-hHHHHHHHHH
Q 004761 659 ---------------------VESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-T-PRAKEKAQQL 715 (732)
Q Consensus 659 ---------------------L~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~-~~~k~kA~~l 715 (732)
+.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++.+. + +.++..|..+
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 4456677888888888888888788889999999999999999873 3 7999999999
Q ss_pred HHHhhc
Q 004761 716 LSHFRN 721 (732)
Q Consensus 716 L~~l~~ 721 (732)
|.+|..
T Consensus 331 L~nL~~ 336 (644)
T 2z6h_A 331 LRHLTS 336 (644)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 999964
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=6.3e-21 Score=216.91 Aligned_cols=280 Identities=20% Similarity=0.206 Sum_probs=248.4
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE 519 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~ 519 (732)
....+.++.|++.|++++++.+..|+..|.+++..++.++..+.+.|+++.|+.+|.+++..++..++.+|.|++.. ++
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 34467899999999999999999999999999998778899999999999999999999999999999999999975 67
Q ss_pred hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
++..+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+...|+++.|+.++.++++..++.++++|.||+.
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 8889999999999999998876 456677899999999999999999999999999999999999999999999999998
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVES--GSQRGKENAASIL 674 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~L 674 (732)
...... ...|+++.|++++ +.+..++..|+++|.+|+... +.+..+.+.|+++.|++++.+ .++..++.|+.+|
T Consensus 257 ~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 754322 2358999999999 788999999999999998864 588999999999999999975 3478999999999
Q ss_pred HHHhcCChH---hHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhcc
Q 004761 675 LQLCLHSPK---FCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 675 ~~L~~~~~~---~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~ 722 (732)
.+|+.++++ .+..+.+.|+++.|+.+++++. +.+++.|.++|.++...
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 999986543 5678889999999999999987 58999999999998753
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=198.98 Aligned_cols=195 Identities=22% Similarity=0.233 Sum_probs=175.3
Q ss_pred CchHHHHHHHhcCCCH--HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cch
Q 004761 444 TPYVKKLIEDLNSTSN--EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~--~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~ 520 (732)
...++.+|++|.++++ +.+..|+..|++++..++.+|..+.+.|+||+|+.+|+++++.+++.|+++|.||+.+ ++|
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4568999999999987 8888999999999999999999999999999999999999999999999999999985 789
Q ss_pred HHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc----------------CCCH
Q 004761 521 KAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG----------------SGTL 583 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----------------~~~~ 583 (732)
+..+++.|++++|+.+|. .++.+++++|+++|++|+..+.+|..|++ +++++|++++. ..++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 57899999999999999999999999987 47999998763 1257
Q ss_pred HHHHHHHHHHHHhccC-chhHHHHHhh-chHHHHHHhc-C------CChHHHHHHHHHHHHHhCC
Q 004761 584 RGRKDAATALFNLSIF-HENKARIIQA-GAVKHLVDLM-D------PSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~-~~n~~~lv~~-G~V~~Ll~lL-~------~~~~l~e~al~iL~nLa~~ 639 (732)
.+++.|..+|+||+.. +++|..|.+. |+|+.|+.++ . .+...+|.|+.+|.||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999999985 4899999985 7899999999 1 2557899999999999864
No 29
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.2e-21 Score=222.53 Aligned_cols=286 Identities=13% Similarity=0.110 Sum_probs=240.7
Q ss_pred ccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCh-------------------------------------h-hHHH
Q 004761 442 TTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNM-------------------------------------E-NRMI 482 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~-------------------------------------~-~r~~ 482 (732)
.+.+.++.|++.++. .+......++..|.+++...+ + ++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 345668899999985 566778889999998875322 1 5678
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHH---HHHHHHHHHHHhccCc
Q 004761 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGG---AKENSAAALFSLSVLE 559 (732)
Q Consensus 483 i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e---~~~~Aa~~L~~Ls~~~ 559 (732)
+.++|+||.|+.++++.++.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++.. .+.+|+.+|.+|+...
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999999988654 8999999999999766
Q ss_pred hhHHHHHh---cchHHHHHHhhcC--CCH------------HHHHHHHHHHHHhccCch-----hHHHHHhh-chHHHHH
Q 004761 560 EYKAKIGR---SGAVKALVDLLGS--GTL------------RGRKDAATALFNLSIFHE-----NKARIIQA-GAVKHLV 616 (732)
Q Consensus 560 ~~k~~i~~---~g~i~~Lv~lL~~--~~~------------~~~~~Al~aL~nLs~~~~-----n~~~lv~~-G~V~~Ll 616 (732)
+....+.. .|+|++|+.+|.. +.. ..+..|+.||.||+..++ .+.++++. |+++.|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 66555532 3999999999983 211 237799999999999873 47888985 9999999
Q ss_pred Hhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHc------CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 004761 617 DLM-DPSTGMVDKAVALLANLSTVGEGR-LAIARE------GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLV 688 (732)
Q Consensus 617 ~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~------~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v 688 (732)
++| +.+..++..|+.+++||+.+++++ ..+.+. +.++.|+.+++.++.+.+..|+++|.+++..++..+..+
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 999 888899999999999999999875 355332 248899999999999999999999999987788888888
Q ss_pred HhC-CCHHHHHHchhc--CChHHHHHHHHHHHHhhccccCCc
Q 004761 689 LQE-GAVPPLVGLSQS--GTPRAKEKAQQLLSHFRNQREGST 727 (732)
Q Consensus 689 ~~~-G~i~~L~~Ll~~--g~~~~k~kA~~lL~~l~~~~~~~~ 727 (732)
++. ++++.|+.+++. +++.++..+..++.+|.+..+++.
T Consensus 693 l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~ 734 (778)
T 3opb_A 693 LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG 734 (778)
T ss_dssp TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT
T ss_pred HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 887 799999999999 789999999999999998655443
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=2.8e-20 Score=217.87 Aligned_cols=280 Identities=21% Similarity=0.204 Sum_probs=247.5
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc-CCc
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI-NDE 519 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~ 519 (732)
....+.++.|++.|+++++.++..|+..|.+++......+..+.+.|+++.|+.+|.+++..++..++.+|.+|+. +++
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 3446789999999999999999999999999998877888889999999999999999999999999999999997 577
Q ss_pred hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
++..+.+.|+++.|+.+|++++ ...+..++.+|.+|+....++..+...|+++.|+.++.+++...++.++++|.||+.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 8999999999999999999876 567889999999999999999999999999999999999999999999999999997
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESG--SQRGKENAASIL 674 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e~A~~~L 674 (732)
..... ....|+++.|+.+| +.+..+++.|+++|.+|+... +.+..+.+.|+++.|+.++.+. .+.+++.|+.+|
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 65332 22358999999999 778899999999999998864 6788899999999999999763 379999999999
Q ss_pred HHHhcCCh---HhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhcc
Q 004761 675 LQLCLHSP---KFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 675 ~~L~~~~~---~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~ 722 (732)
.+|+..++ ..+..+.+.|+++.|+.++.+.+ +.+++.|.++|.++...
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 99998644 34556888999999999999886 68999999999998653
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=5.2e-21 Score=193.75 Aligned_cols=193 Identities=23% Similarity=0.267 Sum_probs=172.7
Q ss_pred CCHHHHHHhhccCCH--HHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhH
Q 004761 487 GAIPPLLSLLYSEAQ--LTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYK 562 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~--~v~~~A~~~L~nLs~-~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k 562 (732)
-.++.|+.+|.++++ .++..|+++|.||+. ++.++..+.+.|++++|+.+|+++++++++.|+++|.+|+. ++++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999887 899999999999996 56789999999999999999999999999999999999998 57899
Q ss_pred HHHHhcchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-----C------------CChH
Q 004761 563 AKIGRSGAVKALVDLLG-SGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-----D------------PSTG 624 (732)
Q Consensus 563 ~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-----~------------~~~~ 624 (732)
..|.+.|+||+|+++|+ +++..+++.|+.+|+||+..+.+|..+++ +++++|++++ . .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 57899999999999999999999999887 5799999876 1 1447
Q ss_pred HHHHHHHHHHHHhC-ChhhHHHHHHcC-cHHHHHHHHhcC------CHHHHHHHHHHHHHHhcC
Q 004761 625 MVDKAVALLANLST-VGEGRLAIAREG-GIPSLVEVVESG------SQRGKENAASILLQLCLH 680 (732)
Q Consensus 625 l~e~al~iL~nLa~-~~~~r~~i~~~~-~I~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~ 680 (732)
+.+.|.++|.||+. ++++|.+|.+.+ +|+.|+.+++.+ +...+|+|+.+|.|||..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 89999999999987 568999999875 589999999762 567899999999999974
No 32
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.86 E-value=3.2e-22 Score=192.19 Aligned_cols=94 Identities=32% Similarity=0.484 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 207 QMNYIVDLISHIRDCMLKIERFEATSGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.++++..++..+.+. .....+|++|+||||+++|+|||+++|||||||.||++||..++.+||+||++++.
T Consensus 83 ~i~~~~~l~~~~~~~---------~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 83 YLMDMDELFSQVDEK---------RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp HHHHHHHHHHHHHHG---------GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HHHHHHHHHHHHhhh---------ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 455666666544331 23457899999999999999999999999999999999998754589999999999
Q ss_pred CCCcccHHHHHHHHHHHHHcCCC
Q 004761 287 TNLIPNYTVKAMIENWCEENNLR 309 (732)
Q Consensus 287 ~~l~pn~~l~~~i~~~~~~~~~~ 309 (732)
.+|+||+.|+++|+.|+..||+.
T Consensus 154 ~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 154 DQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp GGCEECHHHHHHHHHHHHHCTTC
T ss_pred hhCcchHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999874
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=6.1e-20 Score=219.32 Aligned_cols=277 Identities=23% Similarity=0.254 Sum_probs=234.5
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSE-AQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~k 521 (732)
.+.++.|++.|.+.++.++..|+..|.+++... .++..+... |+++.|+.+|.++ ++.++..|+.+|.+|+.+..++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 567899999999999999999999999999764 566666654 8999999999865 8999999999999999998888
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-C
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-F 599 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~ 599 (732)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. ++.+..+...|+++.|+.+|++.+..++..|+.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999986 4667777788999999999999888888888889998886 4
Q ss_pred chhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHH----------------------
Q 004761 600 HENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSL---------------------- 655 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~L---------------------- 655 (732)
.+++..+++.|+++.|+.+| .......+.++.+|.+|+.++..+..+++.|+++.|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 56777888888888888888 334455667788888888777777777666655544
Q ss_pred -----------------HHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc-CC-hHHHHHHHHHH
Q 004761 656 -----------------VEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS-GT-PRAKEKAQQLL 716 (732)
Q Consensus 656 -----------------v~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~-g~-~~~k~kA~~lL 716 (732)
++++.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++.. ++ +.++..|..+|
T Consensus 388 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 444555677888889999999998888888899999999999999987 34 48999999999
Q ss_pred HHhhc
Q 004761 717 SHFRN 721 (732)
Q Consensus 717 ~~l~~ 721 (732)
.++..
T Consensus 468 ~nL~~ 472 (780)
T 2z6g_A 468 RHLTS 472 (780)
T ss_dssp HHTTS
T ss_pred HHHHh
Confidence 99865
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=7.1e-20 Score=182.60 Aligned_cols=196 Identities=27% Similarity=0.306 Sum_probs=179.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~ 522 (732)
.+..+.|+.+|.+.+++++..|++.|.+++..+++++..+.+.|+++.|+.+|+++++.++..|+++|.|++.. +.++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999964 57788
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-c
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-H 600 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-~ 600 (732)
.+.+.|+++.|+.+|+++++.++..|+++|.+|+.. ++.+..+...|+++.|+.+|+++++.+++.|+.+|.||+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999964 45566778889999999999999999999999999999987 6
Q ss_pred hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 004761 601 ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~ 639 (732)
+++..+++.|+++.|++++ +.+..+++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 7888899999999999999 88899999999999999863
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=5e-20 Score=220.01 Aligned_cols=271 Identities=19% Similarity=0.237 Sum_probs=229.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.+++.|.+++.+.+..++..++.. ++..+. .|+++.|+.+|.+.++.+++.|+.+|.+|+.+..++..+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3478999999999988888888888743 344554 799999999999999999999999999999987788777
Q ss_pred HH-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-h
Q 004761 525 AE-AGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-E 601 (732)
Q Consensus 525 ~~-~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~ 601 (732)
.. .|+++.|+.+|.++ +.+++.+|+.+|.+|+...+++..++..|+++.|+.+|+++++.++..|+.+|.||+... .
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 75 48999999999866 899999999999999999889999999999999999999999999999999999999875 5
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHHHHHHHh
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGS-QRGKENAASILLQLC 678 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s-~~~~e~A~~~L~~L~ 678 (732)
++..+++.|+++.|+.+| +.+..+...++.+|.+|+. +++++..+.+.++++.|++++++++ ...++.|+.+|++||
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 666777899999999999 7778888999999999986 5788999999999999999998765 456778999999999
Q ss_pred cCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 679 LHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 679 ~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
. ++..+..+++.|+++.|+.++.++++..++.|.++|..+....
T Consensus 348 ~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 348 V-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp T-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred c-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 7 6678889999999999999999999999999999999887544
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=1.1e-19 Score=181.21 Aligned_cols=196 Identities=23% Similarity=0.293 Sum_probs=179.4
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CchhH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-FHENK 603 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~~n~ 603 (732)
..++.++|+.+|++++++++..|+++|.+++. .++++..+...|+++.|+.+|+++++.++..|+.+|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45789999999999999999999999999995 56778888999999999999999999999999999999996 56788
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
..+++.|+++.|+.+| +++..++..|+++|.||+.. ++.+..+.+.|+++.|++++.++++..++.|+++|.+++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999 77899999999999999964 456678889999999999999999999999999999999988
Q ss_pred hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+..+..+.+.|+++.|+.++.++++.++++|..+|+.|..
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998864
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.85 E-value=4.9e-22 Score=169.16 Aligned_cols=73 Identities=34% Similarity=0.465 Sum_probs=69.2
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
..+|++|.||||+++|+|||+++|||||||.||++||.. +.+||+||+++...+|+||+.|+++|+.|+..|+
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 458999999999999999999999999999999999985 4799999999999999999999999999999885
No 38
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.85 E-value=7.2e-22 Score=173.07 Aligned_cols=74 Identities=35% Similarity=0.452 Sum_probs=69.9
Q ss_pred CCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 233 GVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 233 ~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||+||++++..+|+||+.|++.|+.|+..|+
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999999999985 5899999999999999999999999999999886
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.84 E-value=1.4e-21 Score=170.52 Aligned_cols=74 Identities=28% Similarity=0.374 Sum_probs=70.4
Q ss_pred CCCCCccccccCcccCCCceecCCC-cccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASG-QTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
..+|++|.||||+++|+|||+++|| |||||.||++||.. +.+||+|++++...+|+||+.||+.|+.|+..++.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence 4689999999999999999999999 99999999999986 47999999999999999999999999999999975
No 40
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.80 E-value=4.3e-20 Score=214.84 Aligned_cols=123 Identities=20% Similarity=0.294 Sum_probs=97.4
Q ss_pred CCCCcCchHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 004761 157 QDDTIRCTDHLVKIIESL----GLTSNQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATS 232 (732)
Q Consensus 157 ~~~~~~~~~~~~~i~~~~----~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (732)
.|+|+|+++.|.++...+ |+.+...+ .++..|.+.+++++...+..| ..
T Consensus 832 ~DgRSy~~elF~~a~~il~~~~~l~~~~~i-~~~~~l~~~~~~~~~~~~~~e--------------------------~~ 884 (968)
T 3m62_A 832 KDERSFNRNLFVRAVDILGRKTGLASPEFI-EKLLNFANKAEEQRKADEEED--------------------------LE 884 (968)
T ss_dssp HCTTTCCHHHHHHHHHHHTTSTTSSCHHHH-HHHHHHHHHHHHHHHHHHHHH--------------------------HH
T ss_pred hcCCCCCHHHHHHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHHHHHHhhh--------------------------cc
Confidence 388999999998666544 57777766 555555555544322111100 01
Q ss_pred CCCCCCccccccCcccCCCceecCCC-cccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 233 GVPIPPYFRCPLSLELMIDPVIVASG-QTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 233 ~~~~p~~f~Cpi~~~lm~dPV~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
..++|++|+|||++++|+|||++++| +||||.+|++|+..+ .+||+||++|++++++||++||+.|++||..++
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~-~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD-STDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC-CCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 13599999999999999999999998 799999999999874 799999999999999999999999999999986
No 41
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.9e-18 Score=194.84 Aligned_cols=273 Identities=15% Similarity=0.145 Sum_probs=226.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCc----
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDE---- 519 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~---- 519 (732)
.++.+++.|..++.+.+..|+..|..++.+. +.|..+++. |+++.|+.++++ .+..+...++.+|.||+.+.+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 5678888898887777999999999999764 778888865 779999999985 788899999999999976321
Q ss_pred -----------------------------------hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 520 -----------------------------------NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 520 -----------------------------------~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
++..+.+.|++++|+.+++++++.+++.|+++|.+|+.+.++|..
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~ 493 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ 493 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345566899999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHhhcCCCHH---HHHHHHHHHHHhccCchhHHHHHh---hchHHHHHHhcC--CCh-------------
Q 004761 565 IGRSGAVKALVDLLGSGTLR---GRKDAATALFNLSIFHENKARIIQ---AGAVKHLVDLMD--PST------------- 623 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~---~~~~Al~aL~nLs~~~~n~~~lv~---~G~V~~Ll~lL~--~~~------------- 623 (732)
+...|+++.|+.+|.+++.. ++..|+.||.+|+...+....+-. .|+|++|+++|. +..
T Consensus 494 lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~ 573 (778)
T 3opb_A 494 LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573 (778)
T ss_dssp HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence 99999999999999987654 899999999999875543332211 499999999993 221
Q ss_pred HHHHHHHHHHHHHhCCh-----hhHHHHHHc-CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhH-HHHHhCC----
Q 004761 624 GMVDKAVALLANLSTVG-----EGRLAIARE-GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC-TLVLQEG---- 692 (732)
Q Consensus 624 ~l~e~al~iL~nLa~~~-----~~r~~i~~~-~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~-~~v~~~G---- 692 (732)
--...|+.+|.|||..+ +.|..|+++ |+++.|..+|.+++...+..|++++.||+. +++.+ ..+.+.+
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchh
Confidence 12668999999999986 357888885 899999999999999999999999999998 55543 3443322
Q ss_pred --CHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 693 --AVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 693 --~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.++.|+.|+++++.++|+.|.++|.++.
T Consensus 653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 653 LRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3778999999999999999999999984
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.78 E-value=1.4e-19 Score=151.65 Aligned_cols=75 Identities=60% Similarity=1.146 Sum_probs=71.9
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
..+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++...++.||+.|+++|+.|..+|++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999999999998778999999999999999999999999999999986
No 43
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=1.3e-18 Score=182.21 Aligned_cols=79 Identities=35% Similarity=0.533 Sum_probs=73.7
Q ss_pred cCCCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004761 231 TSGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNLR 309 (732)
Q Consensus 231 ~~~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 309 (732)
....++|++|.||||+++|+|||+++|||||||.||++||..++.+||+|+++++..+++||+.|++.|+.|+..|++.
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 3456789999999999999999999999999999999999987677999999999999999999999999999999874
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=1.2e-16 Score=168.26 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=187.2
Q ss_pred hHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHH
Q 004761 446 YVKKLIEDLNST------------SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLS-LLYSEAQLTQEHAVTALL 512 (732)
Q Consensus 446 ~i~~Lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~-lL~s~~~~v~~~A~~~L~ 512 (732)
.++..++.|.++ +.+.+..|+..|..++.. .++...+.+.|++++|+. +|.++++.+++.|+++|.
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456777777764 235678899999999964 578888899999999999 999999999999999999
Q ss_pred HhhcC-CchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHH
Q 004761 513 NLSIN-DENKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDA 589 (732)
Q Consensus 513 nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A 589 (732)
|++.+ +..+..+++.|++++|+.+|+++ +..++.+|+++|.+++... .....+...|+++.|+.+|++++..+++.|
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 99986 45788899999999999999964 7899999999999998754 556677788999999999999999999999
Q ss_pred HHHHHHhccC-chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHc-CcHHHHH----HHHhc
Q 004761 590 ATALFNLSIF-HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIARE-GGIPSLV----EVVES 661 (732)
Q Consensus 590 l~aL~nLs~~-~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~-~~I~~Lv----~lL~~ 661 (732)
+++|.+|+.. ++.+..+++.|+++.|+.+| +++..+++.|+.+|.+|+.... ........ ..+..++ +.++.
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~ 267 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 267 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc
Confidence 9999999874 66888999999999999999 7788999999999999988732 22222221 1232222 23332
Q ss_pred -C-CHHHHHHHHHHHHHHhc
Q 004761 662 -G-SQRGKENAASILLQLCL 679 (732)
Q Consensus 662 -~-s~~~~e~A~~~L~~L~~ 679 (732)
. +.+..+.|..++-++..
T Consensus 268 ~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 268 HEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp CGGGHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHcC
Confidence 2 45667777777666553
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=4.2e-17 Score=171.75 Aligned_cols=181 Identities=21% Similarity=0.217 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHH-hhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc
Q 004761 542 GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVD-LLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 542 ~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL 619 (732)
.+.+..|+..|.++....++...+...|++++|+. +|.++++.++..|+++|.|++.++ .++..+++.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 56788999999999998889998999999999999 999999999999999999999865 5778899999999999999
Q ss_pred --CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHH
Q 004761 620 --DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPP 696 (732)
Q Consensus 620 --~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~ 696 (732)
+++..++..|+++|.||+.+ +.+...+.+.|+++.|+.+|.++++..+..|+++|.+++.++++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 45788999999999999975 566778999999999999999999999999999999999988899999999999999
Q ss_pred HHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 697 LVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 697 L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
|+.++.++++.+++.|..+|.++-..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999888544
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-19 Score=153.93 Aligned_cols=73 Identities=26% Similarity=0.452 Sum_probs=65.6
Q ss_pred CCCccccccCcccCCCceecC-CCcccchHHHHHHHhcC-----CCCCCCCCCC---CCCCCCcccHHHHHHHHHHHHHc
Q 004761 236 IPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHG-----LNICPKTRQT---LAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~-----~~~cP~~~~~---l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
.+++|.||||+++|+|||+++ |||||||.||++||..+ ..+||+||.+ +...+|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 578999999999999999996 99999999999999753 4689995555 88899999999999999999888
Q ss_pred CC
Q 004761 307 NL 308 (732)
Q Consensus 307 ~~ 308 (732)
+-
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.64 E-value=4.3e-17 Score=128.87 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=50.6
Q ss_pred ccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 004761 239 YFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYT 294 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~ 294 (732)
.|.||||+++|+|||++ +|||||||.+|++|+..+ .+||+||++|..++|+||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 999999999999999865 57999999999999999863
No 48
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-15 Score=129.95 Aligned_cols=76 Identities=25% Similarity=0.446 Sum_probs=68.9
Q ss_pred CCCCCCccccccCcccCCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcCC
Q 004761 233 GVPIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDH-GLNICPKTRQTL-AHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 233 ~~~~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l-~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
...++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.||..++++|+.|...+++
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 346789999999999999999999 9999999999999975 447899999998 567899999999999999998875
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.8e-14 Score=144.44 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=63.8
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhc-CCCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDH-GLNICPK--TRQTLAHTNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~--~~~~l~~~~l~pn~~l~~~i~~~~~~ 305 (732)
...+|.||||+++|+|||+. .|||+|||.||.+||.. |..+||+ |++++...+|+||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 46799999999999999985 99999999999999986 3468999 98999999999999999999999764
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.46 E-value=3e-14 Score=130.30 Aligned_cols=70 Identities=14% Similarity=0.300 Sum_probs=63.9
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH-TNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~~~~ 305 (732)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.||..|+++|+.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 457799999999999999999999999999999999766799999999987 7899999999999988543
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.43 E-value=1.2e-11 Score=139.62 Aligned_cols=272 Identities=19% Similarity=0.189 Sum_probs=213.7
Q ss_pred CchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcC-Cc
Q 004761 444 TPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSIN-DE 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~-~~ 519 (732)
...|+.|+..+.+. -.+.++.|+..|+.+++.. +..++ .++++.|+..|+. .|.++...++.+|.++-.. +.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 45689999999754 5789999999999999754 33444 5789999999976 5889999999999887442 21
Q ss_pred -----------------hHHHH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--hHHHHHhc-chHHHHHHhh
Q 004761 520 -----------------NKAMI-AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--YKAKIGRS-GAVKALVDLL 578 (732)
Q Consensus 520 -----------------~k~~i-~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~-g~i~~Lv~lL 578 (732)
+...+ .+.+.++.|+.+|+..+...|.+++.+|..|+.... ++..|... ++|+.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 11222 356789999999999999999999999999987442 56677754 9999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc-C----CChHHHHHHHHHHHHHhCCh-hhHHHHHHcCc
Q 004761 579 GSGTLRGRKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM-D----PSTGMVDKAVALLANLSTVG-EGRLAIAREGG 651 (732)
Q Consensus 579 ~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL-~----~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~ 651 (732)
.+.....+-.|+..|.+|+..+.+..+++. .|+++.|+.++ . ....+++.|+.+|.||.+.. .++..+.+.++
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999899999999999999998888777777 69999999999 2 23467899999999998865 47888899999
Q ss_pred HHHHHHHHhcCCH------HHHHH---HHHHHHHHhcC------ChHhHHHHHhCCCHHHHHHchhcC--ChHHHHHHHH
Q 004761 652 IPSLVEVVESGSQ------RGKEN---AASILLQLCLH------SPKFCTLVLQEGAVPPLVGLSQSG--TPRAKEKAQQ 714 (732)
Q Consensus 652 I~~Lv~lL~~~s~------~~~e~---A~~~L~~L~~~------~~~~~~~v~~~G~i~~L~~Ll~~g--~~~~k~kA~~ 714 (732)
++.|..++..+.+ ....+ +..++.-|+.. ++.++..+.+.|+++.|+.++... ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999865321 12233 66666666664 235788889999999999998875 3567777766
Q ss_pred HHHHh
Q 004761 715 LLSHF 719 (732)
Q Consensus 715 lL~~l 719 (732)
++..+
T Consensus 336 tla~~ 340 (651)
T 3grl_A 336 TVSEV 340 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.42 E-value=7.5e-14 Score=131.63 Aligned_cols=69 Identities=20% Similarity=0.387 Sum_probs=64.0
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT-NLIPNYTVKAMIENWCE 304 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-~l~pn~~l~~~i~~~~~ 304 (732)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.||..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999998767899999999887 89999999999998863
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.5e-13 Score=118.94 Aligned_cols=70 Identities=20% Similarity=0.385 Sum_probs=64.4
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
+++++.||||++.|.|||++ +|||+||+.||.+|+..+ .+||.|++++...++.||..++++|+.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 35679999999999999998 899999999999999864 78999999999889999999999999998765
No 54
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.36 E-value=1.2e-10 Score=131.62 Aligned_cols=276 Identities=14% Similarity=0.085 Sum_probs=214.0
Q ss_pred CchHHHHHHHhcC--CCHHHHHHHHHHHHHHhccChh-----------------hH-HHHHhcCCHHHHHHhhccCCHHH
Q 004761 444 TPYVKKLIEDLNS--TSNEIQASAAAELRLLAKHNME-----------------NR-MIIGNCGAIPPLLSLLYSEAQLT 503 (732)
Q Consensus 444 ~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~-----------------~r-~~i~~~G~I~~Lv~lL~s~~~~v 503 (732)
...++.|+.-|+. .+.+....++..|.++...+.. +. ..+.+.+.|+.|+.+|.+.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 4457889999875 4678888899999776544322 12 22345689999999999999999
Q ss_pred HHHHHHHHHHhhcCCc--hHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH-hcchHHHHHHhhc
Q 004761 504 QEHAVTALLNLSINDE--NKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG-RSGAVKALVDLLG 579 (732)
Q Consensus 504 ~~~A~~~L~nLs~~~~--~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~ 579 (732)
+..++..|..|+.... ++..+. ..++++.|+.+|++....+|..|+.+|.+|+..+.....+. -.|+++.|+.+++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999987643 577777 45999999999999999999999999999998776655554 5599999999998
Q ss_pred CCC----HHHHHHHHHHHHHhccCch-hHHHHHhhchHHHHHHhc-CC-Ch------HH--HHHHHHHHHHHhCC-----
Q 004761 580 SGT----LRGRKDAATALFNLSIFHE-NKARIIQAGAVKHLVDLM-DP-ST------GM--VDKAVALLANLSTV----- 639 (732)
Q Consensus 580 ~~~----~~~~~~Al~aL~nLs~~~~-n~~~lv~~G~V~~Ll~lL-~~-~~------~l--~e~al~iL~nLa~~----- 639 (732)
.+. ..+..+++.+|.||..++. |+..+.+.|+++.|..+| .. .. .+ ...++.++..|+..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 643 4778999999999998764 899999999999999999 22 11 11 22367777777664
Q ss_pred --hhhHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHhHHHHHhCC---------CHHHHHHchhcCC-
Q 004761 640 --GEGRLAIAREGGIPSLVEVVESG--SQRGKENAASILLQLCLHSPKFCTLVLQEG---------AVPPLVGLSQSGT- 705 (732)
Q Consensus 640 --~~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G---------~i~~L~~Ll~~g~- 705 (732)
+.++.++.+.|++..|++++... ....+..|+.++..++++++..+..+.+.. ++..|+.++.+..
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23577889999999999998764 678899999999999999999999888653 2333444455444
Q ss_pred hHHHHHHHHHHHHh
Q 004761 706 PRAKEKAQQLLSHF 719 (732)
Q Consensus 706 ~~~k~kA~~lL~~l 719 (732)
...|-.|..+++.+
T Consensus 379 ~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 379 FVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57787777777766
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.31 E-value=9.6e-13 Score=117.14 Aligned_cols=67 Identities=18% Similarity=0.399 Sum_probs=61.5
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHT----NLIPNYTVKAMIENWC 303 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~pn~~l~~~i~~~~ 303 (732)
+++++.||||+++|.|||++ +|||+||+.||.+|+..+ .+||.|++++... .+.+|..++++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 56889999999999999998 999999999999999876 7899999999875 7899999999998874
No 56
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-13 Score=115.48 Aligned_cols=64 Identities=20% Similarity=0.400 Sum_probs=57.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcC------CCCCCCCCCCCCCCCCcccHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHG------LNICPKTRQTLAHTNLIPNYTVKAM 298 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~------~~~cP~~~~~l~~~~l~pn~~l~~~ 298 (732)
.+.+++.||||++.|.|||+++|||+||+.||.+|+... ..+||.|++++...++.||+.|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 467899999999999999999999999999999999863 5789999999998899999876544
No 57
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=114.66 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=64.3
Q ss_pred CCCccccccCcccCCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004761 236 IPPYFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
+.++|.||||+++|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+++|..+..+++......
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4467999999999999999 9999999999999999987679999999999999999999999888876654
No 58
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.28 E-value=1.3e-12 Score=118.28 Aligned_cols=68 Identities=22% Similarity=0.443 Sum_probs=62.9
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 302 (732)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 57789999999999999999999999999999999987766999999999998999999999988764
No 59
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=6.4e-13 Score=112.60 Aligned_cols=64 Identities=30% Similarity=0.507 Sum_probs=57.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH-----GLNICPKTRQTLAHTNLIPNYTVKAM 298 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~pn~~l~~~ 298 (732)
.+.++|.||||++.|.+||+++|||+||+.||.+|+.. +...||.|++++...++.||+.++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 46789999999999999999999999999999999986 25789999999999899999776554
No 60
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=4e-12 Score=118.32 Aligned_cols=64 Identities=16% Similarity=0.388 Sum_probs=53.0
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWC 303 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 303 (732)
.++|.||||++.|.|||+++|||+||+.||.+|+... .+||.|++++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 3578999999999999999999999999999999864 7899999998653 34566666666554
No 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=1.8e-12 Score=117.11 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=62.9
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++...++.||+.|+++|..|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 35679999999999999999 9999999999999997 68999999998889999999999999997765
No 62
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.26 E-value=9.2e-13 Score=118.65 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=62.4
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH-------TNLIPNYTVKAMIENWCE 304 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-------~~l~pn~~l~~~i~~~~~ 304 (732)
..++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|...|+.|..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 446899999999999999999999999999999998877899999999864 678899999999999853
No 63
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.26 E-value=1.7e-12 Score=124.72 Aligned_cols=69 Identities=20% Similarity=0.387 Sum_probs=62.0
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAH-TNLIPNYTVKAMIENWCE 304 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~~~ 304 (732)
+.+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++.. ..+.||..++++|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45688999999999999998 9999999999999999877899999999854 579999999999999844
No 64
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=8.5e-13 Score=111.83 Aligned_cols=64 Identities=23% Similarity=0.500 Sum_probs=57.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH-----GLNICPKTRQTLAHTNLIPNYTVKAM 298 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~pn~~l~~~ 298 (732)
.+++++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++...++.||+.|+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 46789999999999999999999999999999999976 35789999999999999999876544
No 65
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5e-12 Score=101.78 Aligned_cols=55 Identities=9% Similarity=0.309 Sum_probs=49.8
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNL 289 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 289 (732)
.+++++.||||++.|++||+++|||+||+.||.+|+..+..+||.|++++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4678999999999999999999999999999999997666899999999876654
No 66
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.4e-12 Score=108.21 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.||..+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 35678999999999999999999999999999999986 478999999996 67889966655543
No 67
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.24 E-value=6.7e-12 Score=103.52 Aligned_cols=59 Identities=25% Similarity=0.423 Sum_probs=50.5
Q ss_pred CCCCCccccccCcccCCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCCC-CCCCccc
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDH-GLNICPKTRQTLA-HTNLIPN 292 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~-~~~l~pn 292 (732)
..+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++. ...+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 45788999999999999999999 9999999999999985 3468999999854 3456666
No 68
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=7.7e-12 Score=111.92 Aligned_cols=69 Identities=19% Similarity=0.433 Sum_probs=60.7
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHG--LNICPKTRQTLAHTNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~ 305 (732)
.+.+.||||++.|.|||+++|||+||+.||.+|+..+ ..+||.|++++....+.+|..+.++++.+...
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999853 35899999999999999998888887777553
No 69
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=100.59 Aligned_cols=58 Identities=21% Similarity=0.416 Sum_probs=52.3
Q ss_pred CCCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004761 235 PIPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 293 (732)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+... .+||.|++++...++.+|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCSCCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCcccccccC
Confidence 467899999999999999997 999999999999999864 7899999999988887763
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.15 E-value=3.2e-09 Score=105.31 Aligned_cols=188 Identities=24% Similarity=0.256 Sum_probs=158.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...++.|++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 5568999999999999999999999987653 3679999999999999999999999988752
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.+.++.|+..|++.++.++..|+.+|..+.. .++++.|+.+|.+.++.++..|+.+|.++..
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 4578999999999999999999999987743 4688999999999999999999999998843
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
..+++.|..++ +++..++..++.+|..+.. ..+++.|..++.++++.++..|+.+|..+..+..
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 35889999999 7888999999999998843 2357888899999999999999999998877543
No 71
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.3e-11 Score=98.92 Aligned_cols=55 Identities=18% Similarity=0.480 Sum_probs=48.9
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKTRQTLAHTNL 289 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l 289 (732)
.+++++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|++++...++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 46789999999999999999999999999999999973 45789999999876554
No 72
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=1.8e-11 Score=118.19 Aligned_cols=68 Identities=22% Similarity=0.443 Sum_probs=62.7
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 302 (732)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 57889999999999999999999999999999999987667999999999998999999999888753
No 73
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=3.1e-11 Score=96.81 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=50.3
Q ss_pred CccccccCcc-cCCCc----eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLE-LMIDP----VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~-lm~dP----V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
+++.||||++ .+.+| |+++|||+||+.||.+|+..+...||.|++++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777889999999998888876
No 74
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.13 E-value=2.3e-09 Score=111.35 Aligned_cols=197 Identities=13% Similarity=0.044 Sum_probs=146.8
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...++.|++.|.++++.++..|++.|..+.. .++++.|+.+|.++++.++..|+.+|.++.........
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~ 90 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 90 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH
Confidence 3458999999999999999999999988762 24688899999999999999999999988644322111
Q ss_pred HHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 IAEAGAIEPLI-HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~~g~l~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
.++.|. .++++.++.++..++.+|..+..... .....+++.|+.++.+.++.++..|+.+|.++..
T Consensus 91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 233333 24567788999999999988753211 0112467888888988889999999999887643
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~ 678 (732)
.++++.|+.++ +++..+...|+..|..+.... ..+++.|+.++.+.++.++..|+.+|..+.
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 34788888888 777888888888888874321 124677888888888888888888887765
No 75
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=1.6e-11 Score=110.63 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=56.3
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLI-PNYTVKAMIEN 301 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-pn~~l~~~i~~ 301 (732)
++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++...++. ++..+.+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 3467899999999999999999999999999999998667999999999887765 45666666643
No 76
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=9.1e-12 Score=115.99 Aligned_cols=66 Identities=14% Similarity=0.313 Sum_probs=57.1
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC---------CCCCcccHHHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA---------HTNLIPNYTVKAMIE 300 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~---------~~~l~pn~~l~~~i~ 300 (732)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++. ...+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 467899999999999999999999999999999999887679999998753 235668888888775
No 77
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.10 E-value=4.4e-09 Score=104.30 Aligned_cols=189 Identities=22% Similarity=0.214 Sum_probs=157.8
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 486 CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565 (732)
Q Consensus 486 ~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 565 (732)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+..|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4679999999999999999999999987642 467999999999999999999999998764
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHH
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
..++++.|+.+|.+.++.++..|+.+|..+.. .++++.|+.++ +++..++..|+.+|..+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 24688999999999999999999999998753 36889999999 8888999999999998843
Q ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcccc
Q 004761 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..+++++++.++..|...|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2478999999999999999999999998853 2357789999999999999999999998876644
Q ss_pred C
Q 004761 725 G 725 (732)
Q Consensus 725 ~ 725 (732)
+
T Consensus 207 ~ 207 (211)
T 3ltm_A 207 H 207 (211)
T ss_dssp -
T ss_pred C
Confidence 3
No 78
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.07 E-value=8e-09 Score=101.61 Aligned_cols=184 Identities=25% Similarity=0.265 Sum_probs=157.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
.+..+.+++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4557899999999999999999999987653 2578999999999999999999999987742
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
...++.|+..|.+.++.++..|+.+|..+.. ..+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 3578999999999999999999999987643 3588999999999999999999999988743
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~ 678 (732)
.++++.|..++ +++..++..|+.+|..+.. ..+++.|..++.+.++.++..|+.+|..+-
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46889999999 7788999999999998832 236788888999999999999999988754
No 79
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=9.5e-11 Score=93.28 Aligned_cols=46 Identities=22% Similarity=0.508 Sum_probs=41.9
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc--CCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKT 280 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~~ 280 (732)
.+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999999999999999999999999999999985 45689987
No 80
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.06 E-value=5.5e-11 Score=97.00 Aligned_cols=58 Identities=21% Similarity=0.454 Sum_probs=52.4
Q ss_pred CCCCccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004761 235 PIPPYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 293 (732)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.|++++...++.|++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 356789999999999999 899999999999999999876 6999999999988888864
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.04 E-value=7.1e-09 Score=101.97 Aligned_cols=184 Identities=22% Similarity=0.224 Sum_probs=157.0
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
+..+.++.+|.++++.++..|+.+|..+.. .+.++.|+..|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 567889999999999999999999987652 357899999999999999999999998764
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHH
Q 004761 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLA 645 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~ 645 (732)
...+++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.++ +++..++..|+.+|+.+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 23688999999999999999999999988743 35888999999 7888999999999998743
Q ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 646 IAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 646 i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
...++.|..++.+.++.++..|+.+|..+.. + .+++.|..+++++++.++..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999998832 2 257788889999999999999999988754
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=4.3e-10 Score=87.73 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=41.6
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc--CCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKT 280 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~~ 280 (732)
.+.+++.||||++.+.+||+++|||+||+.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46688999999999999999999999999999999865 56789987
No 83
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.96 E-value=5.2e-09 Score=126.11 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=190.5
Q ss_pred ccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH----hcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 442 TTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG----NCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~----~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
.|.+.++.|++.+.++++..+..|+.+|..+++..+.....-. -.+.++.|+.++.+.++.++..|+.+|.++...
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999865433211000 123567777888888999999999999877644
Q ss_pred CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
......-.-.+.++.++..+.+++++++..|+.+|..++.... ..+.. .++++.++.++++.++.++..|+.++.+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM--DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 2221111113567888888888999999999999998876322 12221 2577888888888888888888888777
Q ss_pred hccCchhHH-------H------------------------------------------------HH---hh----chHH
Q 004761 596 LSIFHENKA-------R------------------------------------------------II---QA----GAVK 613 (732)
Q Consensus 596 Ls~~~~n~~-------~------------------------------------------------lv---~~----G~V~ 613 (732)
++.....+. . +. .. .+++
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~ 362 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILP 362 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 764321100 0 00 01 1333
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCC
Q 004761 614 HLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692 (732)
Q Consensus 614 ~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G 692 (732)
.+.+++ +.+..+++.|+.+|++++........-.-.+.++.++..+.+.++.++..|+++|.+++...+.......-.+
T Consensus 363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ 442 (852)
T 4fdd_A 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP 442 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344444 5677788888888888887553211111134678888889889999999999999998873221100111125
Q ss_pred CHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 693 AVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 693 ~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
+++.|+..+.+++++++..|..+|..+.+.
T Consensus 443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 443 LMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 678888889888999999999999888653
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=6.5e-10 Score=94.66 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=47.9
Q ss_pred CCCCCccccccCcccCCC----ceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCC
Q 004761 234 VPIPPYFRCPLSLELMID----PVIVASGQTYERVFIQKWLDHG--LNICPKTRQTLAHT 287 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~d----PV~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~ 287 (732)
..+.+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.|++++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 346788999999999999 9999999999999999999864 47899999987654
No 85
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.9e-10 Score=92.81 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=46.1
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
..+++.||||++.|.|||+++|||+||+.||.+|+..+ .+||.|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHh
Confidence 45789999999999999999999999999999999876 7899999987643
No 86
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.95 E-value=4.6e-08 Score=101.39 Aligned_cols=199 Identities=14% Similarity=0.039 Sum_probs=153.5
Q ss_pred HhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHH
Q 004761 484 GNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKA 563 (732)
Q Consensus 484 ~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~ 563 (732)
...+.++.|+..|.++++.++..|+.+|.++. ..+.++.|+.+|.++++.++..|+.+|..+........
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 34578999999999999999999999999886 13468899999999999999999999998864332111
Q ss_pred HHHhcchHHHHHH-hhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 564 KIGRSGAVKALVD-LLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 564 ~i~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
..++.|.+ ++.+.++.++..|+.+|.++...... ....+++.|+.++ +++..++..|+..|.++..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 13344442 45778899999999999998643211 1235788899999 8888999999999887643
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 642 ~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
..+++.|+.++.+.++.++..|+++|..+...++ .+++.|..+++++++.++..|...|..+.
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999998864333 24567777777777888888887777664
No 87
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.93 E-value=2.1e-10 Score=91.37 Aligned_cols=55 Identities=22% Similarity=0.509 Sum_probs=49.3
Q ss_pred CccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004761 238 PYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 293 (732)
+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++...++.|++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 468899999999998 88999999999999999987 47999999999988887753
No 88
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.89 E-value=1.5e-09 Score=89.92 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=47.6
Q ss_pred CCCCccccccCcccC--CCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELM--IDPVIVA--SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNL 289 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm--~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 289 (732)
...+++.||||++.+ .||++.+ |||+||+.||.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999999 5777776 999999999999998777899999999876554
No 89
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=88.69 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=46.1
Q ss_pred CCCCccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
..++++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 467899999999999999 88999999999999999987 4799999998764
No 90
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.85 E-value=2e-09 Score=89.42 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=49.5
Q ss_pred CCCCccccccCcccCCCc---eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 235 PIPPYFRCPLSLELMIDP---VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dP---V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
...+++.||||++.|.+| ++++|||+|++.||.+|+... .+||.|++++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 345789999999999987 446999999999999999765 799999999988887776
No 91
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.77 E-value=5.1e-08 Score=117.46 Aligned_cols=271 Identities=13% Similarity=0.038 Sum_probs=185.4
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.+++.+.+++++++..|+.+|..++...+..-.... .+.++.++..+.+.+..++..|+..+.+++.....+..+
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4578888888899999999999999999977654321111 146778888888889999999999999988654333322
Q ss_pred H--HcCCHHHHHHHH-----------cC-----------CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC
Q 004761 525 A--EAGAIEPLIHVL-----------KS-----------GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS 580 (732)
Q Consensus 525 ~--~~g~l~~Lv~lL-----------~~-----------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~ 580 (732)
. -...++.++..+ .+ .+..++..|+.+|..|+..... .+ -..+++.+..++.+
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFH 370 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcC
Confidence 1 112344455554 22 1223578888888888753211 11 12467888888888
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHH
Q 004761 581 GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEV 658 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~l 658 (732)
.+...++.|+.+|.+++........-.-.++++.++.++ +++..++..++.+|.+++..-... ....-.+.++.|++.
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 899999999999999998665322223367889999999 888999999999999988632110 000112357888888
Q ss_pred HhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 659 VESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 659 L~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+.+.++.+++.|+++|.++|...+....... .++++.|+.+++....+....+..++..+.
T Consensus 451 L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 451 ILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 8888999999999999999974322111111 356778888887766665555555555543
No 92
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.72 E-value=7.2e-09 Score=83.55 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=42.8
Q ss_pred CccccccCcccCCCc-eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDP-VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dP-V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
++..||||++.+.+| ++++|||+||+.||.+|+..+ .+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 567899999999998 678999999999999999865 799999998753
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.71 E-value=6.2e-07 Score=102.36 Aligned_cols=264 Identities=11% Similarity=0.068 Sum_probs=184.8
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...++.|...+.+.++.++..|+..|..++...+.. . ...-.++.+..+..+++...+..|+.+|..+...-...
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~-- 160 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-- 160 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--
Confidence 345666667677788999999999999998765432 1 22235667777777888999999999998886542221
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.....++.+..++++.++.+|..|+.+|..++..-... ......+|.+..++.+.+..++..|+.+|..++..-+.
T Consensus 161 -~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 161 -VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp -HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-
Confidence 12345777778888889999999999999987543222 12346789999999999999999999999988764221
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
......+++.+..++ +++..++..++.+|..++..... .......++.+.+++...++.++..|+.+|..++..-+
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 123345777788888 77788999999999998763211 12233568899999998999999999999999987432
Q ss_pred -HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 683 -KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 683 -~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
+......-..++|.+..++++.++.+|+.|..+|..+
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2111111233556666666666666666665554443
No 94
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.71 E-value=4e-09 Score=96.96 Aligned_cols=55 Identities=20% Similarity=0.452 Sum_probs=50.2
Q ss_pred CCccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 237 PPYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
++++.||||++.|.+| |+++|||+||+.||.+|+... .+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 6789999999999999 999999999999999999875 699999999988777765
No 95
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.70 E-value=1.7e-07 Score=109.95 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=150.3
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHH-HhhcCCCHHHHHHHHHHHHHhccC--chhH
Q 004761 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALV-DLLGSGTLRGRKDAATALFNLSIF--HENK 603 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv-~lL~~~~~~~~~~Al~aL~nLs~~--~~n~ 603 (732)
.+.+.|+++.|++++++.|..|+++|.+|+.+...+..+...|++..++ .+|.+.+..++..|+.+|.||+.. .+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3457778888999999999999999999998888888888888887754 578888999999999999999975 4688
Q ss_pred HHHHhhchHHHHHHhc-CC--------------C-------hHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHh
Q 004761 604 ARIIQAGAVKHLVDLM-DP--------------S-------TGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~--------------~-------~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~ 660 (732)
..+++.|++++|..++ .. . ..+.+.++.+|++||... +....+...++++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 8999999999999987 10 0 124567889999998754 45567777888999999874
Q ss_pred c---CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCH---HHHHHchhcCChHHHHHHHHHHHHh
Q 004761 661 S---GSQRGKENAASILLQLCLHSPKFCTLVLQEGAV---PPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 661 ~---~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i---~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
+ ........|+.+|+.++..++.....+.+.|.. ..|..+..+.++ .+.-+..+|.++
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni 256 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNV 256 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhH
Confidence 3 246789999999999999999998888887753 334443444433 345666777665
No 96
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.70 E-value=9.7e-09 Score=79.01 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=42.5
Q ss_pred CccccccCcccCCC----ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMID----PVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~d----PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999977 8889999999999999999987 89999998874
No 97
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.69 E-value=4.7e-07 Score=103.36 Aligned_cols=266 Identities=11% Similarity=0.058 Sum_probs=182.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
..++.+++.++..+++++..|+..|..++..... .+....-...+|.+..++.+.+..++..++.+|..++..-.. .
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h
Confidence 4578888999999999999999999988865322 121112235678888999999999999999999888632111 1
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
......++.+..++++.++++|..++.+|..+...-... . .....+|.+..++.+.+.+++..++.+|..++..-+..
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH
Confidence 122346788889998888999999888887765421111 1 12357788888888888888988888888886421111
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
.....+++.++.++ +.+..+++.|+.+|..++..-... ......++.|..++.+.+...+..++.++..++..-+
T Consensus 437 --~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 437 --FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp --GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC
Confidence 12234678888888 777888888888888886532221 1122456777777777778888888888887776311
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
. ......+++.|..++.+.++.+|..|..+|..+..
T Consensus 513 ~---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 513 Q---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp H---HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred H---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 1 12233577788888877778888888777776654
No 98
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=3.6e-09 Score=85.94 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=46.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
...+++.||||++.+.+ |+++|||+||+.||.+|+.. +.+||.|++++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 45678999999999999 99999999999999999984 579999999887544
No 99
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=5.2e-09 Score=81.03 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=40.9
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.+++.||||++.+.|||+++|||+||+.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467899999999999999999999999999873 4689999998754
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.65 E-value=2.2e-07 Score=109.03 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=147.6
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHhccC--chhHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI-HVLKSGNGGAKENSAAALFSLSVL--EEYKA 563 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~ 563 (732)
+.|.+++..|+++++..+..|+.+|.||+.++..+..+...|++.+++ .+|.+.+.+++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 346667788999999999999999999998888889999999998866 578888999999999999999875 35677
Q ss_pred HHHhcchHHHHHHhhcCCC---------------------HHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc--
Q 004761 564 KIGRSGAVKALVDLLGSGT---------------------LRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-- 619 (732)
Q Consensus 564 ~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-- 619 (732)
.+.+.|++++|..+++... ......++.+|++||... +....+...|+++.|+.+|
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8889999999999886311 123446788999998754 4556788899999999998
Q ss_pred -C-CChHHHHHHHHHHHHHhCCh-hhHHHHHHcCc---HHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 620 -D-PSTGMVDKAVALLANLSTVG-EGRLAIAREGG---IPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 620 -~-~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~---I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
+ ....+...|+.+|.+|+... +....+.+.+. ...+..+.. .+...+-.++++|.++..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 2 35678999999999998865 44556666553 233333333 333446678999999853
No 101
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.65 E-value=1e-07 Score=105.45 Aligned_cols=276 Identities=11% Similarity=0.042 Sum_probs=188.0
Q ss_pred cCchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcC
Q 004761 443 TTPYVKKLIEDLNST--SNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~ 517 (732)
|...++.|++.+.++ ++..+..|+..|..+++.. +..-.... ...++.++.+|.+. +..++..|+.++.++...
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567899999999988 8899999999999998643 21100111 13677788888877 799999999999986432
Q ss_pred Cc-hH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh--HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 518 DE-NK-AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY--KAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 518 ~~-~k-~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
-. +. ......-.++.+...+.+.+.+++..++.+|..+...... ...+ ..++++.++..+++.++.++..|+..+
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 11 10 0011111355566667777899999999999888753211 1111 116778888888888899999999998
Q ss_pred HHhccCchh------------------HHHHHh---hchHHHHHHhc-CC-------ChHHHHHHHHHHHHHhCChhhHH
Q 004761 594 FNLSIFHEN------------------KARIIQ---AGAVKHLVDLM-DP-------STGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 594 ~nLs~~~~n------------------~~~lv~---~G~V~~Ll~lL-~~-------~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
.+++..... ...+++ ..++|.++..+ .. +..++..|+.+|..|+..-. .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~ 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H
Confidence 888754210 001111 34677777777 21 23567788888888865332 1
Q ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
.+. ...++.+...+.+.+...++.|+.+|..++.+.. +.....+ ..+++.|+.++++.++++|..|.++|..+...-
T Consensus 362 ~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 362 DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 222 1356777777888899999999999999997532 2111111 468999999999999999999999999987764
Q ss_pred c
Q 004761 724 E 724 (732)
Q Consensus 724 ~ 724 (732)
.
T Consensus 440 ~ 440 (462)
T 1ibr_B 440 P 440 (462)
T ss_dssp G
T ss_pred c
Confidence 3
No 102
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=2.3e-08 Score=82.05 Aligned_cols=52 Identities=17% Similarity=0.343 Sum_probs=45.6
Q ss_pred CCCCccccccCcccCCCceec---CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIV---ASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~---~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
...++..||||++.|.+|+.+ +|||+|++.||.+|+... .+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 466789999999999988765 999999999999999875 5899999988653
No 103
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.62 E-value=3.4e-08 Score=79.80 Aligned_cols=51 Identities=18% Similarity=0.400 Sum_probs=43.5
Q ss_pred CCCCccccccCcccCC---CceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMI---DPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
....+..||||++.|. +|++++|||+|++.||.+|+..+ .+||.|+.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 3457789999999884 56789999999999999999875 679999998754
No 104
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.61 E-value=2.4e-08 Score=76.77 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=42.9
Q ss_pred CCCccccccCcccCCC---ceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMID---PVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d---PV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
+.++..||||++.|.+ |++++ |||+|++.||.+|+... .+||.|++++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 3467889999999999 88887 99999999999999864 78999998763
No 105
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.60 E-value=1.2e-06 Score=100.95 Aligned_cols=264 Identities=14% Similarity=0.107 Sum_probs=176.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchH-H
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK-A 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k-~ 522 (732)
+..++.+.+.|.+.++.++..|+.++..+.+.+++. +.+.++++.|..+|.+.++.++..|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 345677889999999999999999999999876542 233478899999999999999999999999998754311 0
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC---
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF--- 599 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--- 599 (732)
.-...+.+..|+..+...++-.+...+.+|..+...++.. ...+++.+..++++.++.++..|+.++.++...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 0011234677777777778878888888887776543211 135678888889988899999999999998742
Q ss_pred chhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCC-hh------------------hH-HHH------HHcCc--
Q 004761 600 HENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTV-GE------------------GR-LAI------AREGG-- 651 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~-~~------------------~r-~~i------~~~~~-- 651 (732)
++.....+-..+++.|+.+++++.+++..|+..|..++.. ++ .| .++ .+...
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~ 352 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 352 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHH
Confidence 2222222334455666665566777777788777777531 10 11 111 11222
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 652 --IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 652 --I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
++.|..++.+.+...+..+++++..++.+.+.... ..++.|+.++....+.++..+...++.+
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34455556677889999999999998876543222 2355666666665555555444444433
No 106
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.59 E-value=3.4e-08 Score=88.36 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=43.7
Q ss_pred CCCccccccCcccCCCce------------------ecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDPV------------------IVASGQTYERVFIQKWLDH----GLNICPKTRQTLAH 286 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV------------------~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~ 286 (732)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. .+.+||.||..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 456679999999999987 7899999999999999963 45789999988754
No 107
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.57 E-value=2.9e-08 Score=85.03 Aligned_cols=50 Identities=14% Similarity=0.424 Sum_probs=44.2
Q ss_pred CCCccccccCcccCCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
..++..||||++.|.+ +++++|||.|++.||.+|+... .+||.|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 4567899999999988 8889999999999999999864 699999998754
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=3e-08 Score=81.59 Aligned_cols=49 Identities=14% Similarity=0.344 Sum_probs=43.7
Q ss_pred CCccccccCcccCCCc---eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDP---VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dP---V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.++..||||++.|.+| ++++|||+|++.||.+|+... .+||.|++++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 4678899999999998 778999999999999999875 689999998764
No 109
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.54 E-value=8.8e-07 Score=102.17 Aligned_cols=261 Identities=16% Similarity=0.174 Sum_probs=186.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
.....+++.+.+.+.+.++.+.-.+..+++.+++.. .-++..|.+-|.++|+.++..|+.+|.++.. ++...
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~-- 120 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE-- 120 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH--
Confidence 345778899999998888877778888876554432 1346677788889999999999999988852 22222
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH-
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK- 603 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~- 603 (732)
..++.+..+|.+.++.+|..|+.++..+..... ..+...++++.|..+|.+.++.++..|+.+|..++...+..
T Consensus 121 ---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 ---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred ---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 236778899999999999999999999876321 12223478899999999999999999999999998865422
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc---
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL--- 679 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~--- 679 (732)
..-...+.+..|+..+ +.++-.+-..+.+|..++..++.. ....++.+..++++.++.++..|+.++..+..
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 1112235567777777 556666777778887777543211 12346677777888889999999999999874
Q ss_pred CChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcccc
Q 004761 680 HSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 680 ~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
.+++....+. ..+.+.|+.++. +++.+|-.|...|..+....+
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhCh
Confidence 2344444333 345677777664 678889888888877765433
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.50 E-value=3.5e-08 Score=105.52 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=44.8
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
...||||++.+.|||+++|||+||+.||..|+..+..+||.||+++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999986668999999988654
No 111
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.49 E-value=2.6e-08 Score=81.75 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=40.4
Q ss_pred CccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 56789999999999999999999 999999999 689999998754
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.41 E-value=4.1e-08 Score=90.04 Aligned_cols=57 Identities=21% Similarity=0.456 Sum_probs=51.2
Q ss_pred CCCccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004761 236 IPPYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 293 (732)
-++.+.||||++.+.+| |+++|||+|+..||.+|+... .+||.|+.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 35789999999999998 889999999999999999875 6999999999888887764
No 113
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.34 E-value=1.7e-05 Score=77.98 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=160.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k 521 (732)
+..+..|+++|...++.++..|+..|..+.+..+. -+....+ ..++.++.++++.|..+...|+.+|.-|-.+ +-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 44678899999999999999999999999987432 3333333 5799999999999999999999999888655 3334
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
..+.. ....|..++++++.-.+++|+-.+..+......+ +++..+..++.+.+.+.+..|++++.|++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 43332 3667888889999999999999999985433322 456788889988899999999999999998664
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH--hcCCHHHHHHHHHH
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVV--ESGSQRGKENAASI 673 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL--~~~s~~~~e~A~~~ 673 (732)
... +-.+++.-+-++| +.++.+++.|+.+|..+...+=-.+.+.+--++...++-+ ..|.|..++.|-.+
T Consensus 183 D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 183 DSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp SCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 332 1234555667777 7799999999999999988653211111212233444422 45778777766544
No 114
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.7e-07 Score=77.15 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=39.1
Q ss_pred CccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
+++.||||++.+.|||+++|||+ ||+.|+.++ ..||.||+++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 45779999999999999999999 999999643 689999998865
No 115
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.27 E-value=1.4e-07 Score=81.25 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=49.3
Q ss_pred CCccccccCcccCCCceec---CCCcccchHHHHHHHhc----C---CCCCCC--CCCC--CCCCCCcccHHHHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVIV---ASGQTYERVFIQKWLDH----G---LNICPK--TRQT--LAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~---~~g~ty~r~~I~~~~~~----~---~~~cP~--~~~~--l~~~~l~pn~~l~~~i~~~ 302 (732)
.+.|.||||++.+.+|+++ +|||+||+.||..||.. | ...||. |+.. +.... +.+......+++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~-i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE-IECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH-HHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH-HHHHCCHHHHHHH
Confidence 3578999999999999875 69999999999999862 3 247999 9887 54422 2233335566667
Q ss_pred HH
Q 004761 303 CE 304 (732)
Q Consensus 303 ~~ 304 (732)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 116
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.26 E-value=2.1e-05 Score=94.32 Aligned_cols=274 Identities=12% Similarity=0.053 Sum_probs=185.4
Q ss_pred cCchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHh--cCCHHHHHHhhccC--CHHHHHHHHHHHHHhh
Q 004761 443 TTPYVKKLIEDLNST--SNEIQASAAAELRLLAKHN-MENRMIIGN--CGAIPPLLSLLYSE--AQLTQEHAVTALLNLS 515 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~i~~--~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs 515 (732)
|...++.+++.+.++ ++..+..++..|..++... ++ .+.. ...++.+...+.++ +..++..|+.+|.++.
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999988 8899999999999998642 21 1111 24566677777766 6889999999999876
Q ss_pred cC-Cch-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch-hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHH
Q 004761 516 IN-DEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE-YKAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 516 ~~-~~~-k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
.. ..+ .........++.+...+...+.+++..++.+|..+..... .-.......+++.++..+.+.++.++..|+..
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~ 282 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 42 111 0011111246666777777788999999999988875221 11111223678888888888888999999999
Q ss_pred HHHhccCch---------------------hHHHHHhhchHHHHHHhc-C-------CChHHHHHHHHHHHHHhCChhhH
Q 004761 593 LFNLSIFHE---------------------NKARIIQAGAVKHLVDLM-D-------PSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 593 L~nLs~~~~---------------------n~~~lv~~G~V~~Ll~lL-~-------~~~~l~e~al~iL~nLa~~~~~r 643 (732)
+.+++.... ...+-.-..+++.++..+ . .+..++..|+.+|..++..-.
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-- 360 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--
Confidence 888875421 000001134677777777 2 123567777778877765322
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..+.. ..++.+...+.+.+...++.|+.+|..++.+.. +...... ..+++.|+..+.+.++.+|..|.++|..+.+.
T Consensus 361 ~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 361 DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 11111 245666667777889999999999999988643 3332222 34789999999988899999999999988765
Q ss_pred c
Q 004761 723 R 723 (732)
Q Consensus 723 ~ 723 (732)
-
T Consensus 439 ~ 439 (876)
T 1qgr_A 439 L 439 (876)
T ss_dssp C
T ss_pred C
Confidence 4
No 117
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.24 E-value=2.1e-05 Score=94.29 Aligned_cols=272 Identities=14% Similarity=0.095 Sum_probs=181.7
Q ss_pred chHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-ch
Q 004761 445 PYVKKLIEDLNST--SNEIQASAAAELRLLAKHNMENRM-IIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-EN 520 (732)
Q Consensus 445 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~-~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~~ 520 (732)
..++.+++.+..+ +.+++..|+.++..++..-..+-. .......++.+...+.+.+.+++..++.+|..+.... ..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 3467777888776 688899999999988754322110 0011125667777777888999999999999886532 21
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh-----H--------------HHH--HhcchHHHHHHhhc
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY-----K--------------AKI--GRSGAVKALVDLLG 579 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-----k--------------~~i--~~~g~i~~Lv~lL~ 579 (732)
-........++.++..+.+.++.++..|+..+..++..... . ..+ .-...++.++..|.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 12222336688888888877888999999888877643100 0 000 01245677778775
Q ss_pred C-------CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh--hHHHHHHc
Q 004761 580 S-------GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE--GRLAIARE 649 (732)
Q Consensus 580 ~-------~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~--~r~~i~~~ 649 (732)
. .+...++.|+.+|..++..-+. .++ ..+++.+...+ +.+..+++.|+.+|..++.... ...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 2456788888888888764321 111 24566666667 7788899999999999987542 112222 2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhH--HHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 650 GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC--TLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 650 ~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~--~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..++.++..+.+.++.++..|+++|.+++...+... .... ..+++.|+..+.+. ++++..|.++|..+...
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 368889999988899999999999999998533210 0011 24577788888774 88999999888887654
No 118
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.23 E-value=5.4e-07 Score=71.59 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=43.6
Q ss_pred CCCccccccCcccCCCceec--CCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDPVIV--ASGQT-YERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~--~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
-+++..|+||++-.+|+|++ +|||. ||..|+.+|+..+ ..||.||+++.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchh
Confidence 34677899999999999988 99999 8999999999764 68999999875
No 119
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=7.7e-07 Score=74.30 Aligned_cols=48 Identities=17% Similarity=0.422 Sum_probs=40.8
Q ss_pred CccccccCcccCCC--------------ceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMID--------------PVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~d--------------PV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... .+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56679999999988 4555 599999999999999875 699999998753
No 120
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.19 E-value=1.1e-05 Score=96.49 Aligned_cols=268 Identities=12% Similarity=0.121 Sum_probs=174.7
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch---
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN--- 520 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~--- 520 (732)
..++.+.+.+.+.++..+..|+..+..++.... ..-.... ...++.|+..+.+.++.++..++++|..++..-..
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 345677777888899999999999999996542 2111112 24788889999989999999999999988743100
Q ss_pred -HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--hHHHHHh--cchHHHHHHhhcCCC--HHHHHHHHHHH
Q 004761 521 -KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--YKAKIGR--SGAVKALVDLLGSGT--LRGRKDAATAL 593 (732)
Q Consensus 521 -k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~--~g~i~~Lv~lL~~~~--~~~~~~Al~aL 593 (732)
... -...++.++..|++. +.++..|+++|.+++..-. ....+.. ..+++.|+.++.+.+ +.++..++.+|
T Consensus 448 ~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 011 123477788888765 8899999999988864211 0011111 256788888887533 67888899999
Q ss_pred HHhccCchhH-HHHHhhchHHHHHHhc-CC---------------ChHHHHHHHHHHHHHhCChhhHHHHHH--cCcHHH
Q 004761 594 FNLSIFHENK-ARIIQAGAVKHLVDLM-DP---------------STGMVDKAVALLANLSTVGEGRLAIAR--EGGIPS 654 (732)
Q Consensus 594 ~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~---------------~~~l~e~al~iL~nLa~~~~~r~~i~~--~~~I~~ 654 (732)
..+....+.. ...+ ..+++.+++.+ .. ...++..++.+|.+++..-.. .+.. ...++.
T Consensus 525 ~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~ 601 (861)
T 2bpt_A 525 TTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGL 601 (861)
T ss_dssp HHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHH
T ss_pred HHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHH
Confidence 9987643322 2222 24666666666 11 223556778888887653221 1111 134677
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 655 LVEVVESGSQ-RGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 655 Lv~lL~~~s~-~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++..+...+. ..++.++.++..++...+. ....+- .+++.|...+....+.++..|..++..+.+
T Consensus 602 l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 7777877665 7889999888888764222 222222 378888888877778888888888776643
No 121
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.18 E-value=1.7e-05 Score=91.87 Aligned_cols=251 Identities=14% Similarity=0.065 Sum_probs=153.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
.+..+.+.|.++++.++..|++.|..+.. ++ +. ...++.+..+|.+.++.++..|+.++.++... ++..
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--- 177 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--- 177 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG---
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH---
Confidence 36788899999999999999999999873 22 22 24678889999999999999999999999753 2221
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcC---------------CCHHHHHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGS---------------GTLRGRKD 588 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~ 588 (732)
.+.++.+..+|.+.++.++..|+.+|..++..+... ..+ ...+|.++.+|.. .++-.+..
T Consensus 178 --~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 --EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp --GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred --HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 256777888888889999999999999998654221 111 2566777776652 25666677
Q ss_pred HHHHHHHhccCchhH-HHHH--------------------h-----------------hchHHHHHHhc-CCChHHHHHH
Q 004761 589 AATALFNLSIFHENK-ARII--------------------Q-----------------AGAVKHLVDLM-DPSTGMVDKA 629 (732)
Q Consensus 589 Al~aL~nLs~~~~n~-~~lv--------------------~-----------------~G~V~~Ll~lL-~~~~~l~e~a 629 (732)
.+.+|..++...+.. ..+. - ..++..|..++ +.+..++..|
T Consensus 254 il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~a 333 (618)
T 1w63_A 254 ILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVA 333 (618)
T ss_dssp HHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 777777776643221 1000 0 01233333333 2333333444
Q ss_pred HHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHH
Q 004761 630 VALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 630 l~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
+..|..++... ..+. ......++..+.+.+...+..|+.+|..++..+ +... +++.|...+.+.+...|
T Consensus 334 L~~L~~i~~~~---p~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l~~~d~e~r 402 (618)
T 1w63_A 334 LTSLLKTVQTD---HNAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN--NIRG-----MMKELLYFLDSCEPEFK 402 (618)
T ss_dssp HHHHHHHHHHH---HHHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhhC---HHHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHHHhCCHHHH
Confidence 44443333211 0111 113345555555556666666666666666532 1122 23556666666666666
Q ss_pred HHHHHHHHHhhc
Q 004761 710 EKAQQLLSHFRN 721 (732)
Q Consensus 710 ~kA~~lL~~l~~ 721 (732)
+.+...+..+..
T Consensus 403 ~~~v~~I~~la~ 414 (618)
T 1w63_A 403 ADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 122
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.17 E-value=3.7e-05 Score=91.88 Aligned_cols=274 Identities=11% Similarity=0.056 Sum_probs=183.3
Q ss_pred cCchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCh-hhH--HHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhc
Q 004761 443 TTPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNM-ENR--MIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSI 516 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~-~~r--~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~ 516 (732)
|...++.|++.+.++ ++..+..|+..+..+++.-. +.+ ... ....++.+...+.+. +..++..|+.+|.++..
T Consensus 132 w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 466789999999988 88999999999999986422 110 000 013456667777776 79999999999988642
Q ss_pred C-Cch-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHH
Q 004761 517 N-DEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--YKAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 517 ~-~~~-k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
. ..+ .........++.|...+.+++.+++..++.+|..+..... ....+. ...++.+...+.+.+..++..|+.+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 111 0000112246666777888889999999999988865221 112111 1566777778888889999999999
Q ss_pred HHHhccCchhH-----------------HHHHhhchHHHHHHhc-CC-------ChHHHHHHHHHHHHHhCChhhHHHHH
Q 004761 593 LFNLSIFHENK-----------------ARIIQAGAVKHLVDLM-DP-------STGMVDKAVALLANLSTVGEGRLAIA 647 (732)
Q Consensus 593 L~nLs~~~~n~-----------------~~lv~~G~V~~Ll~lL-~~-------~~~l~e~al~iL~nLa~~~~~r~~i~ 647 (732)
+..++...... ..-.-..+++.++..+ .. +..+...+..+|..++..-. ..+.
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~ 367 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH
Confidence 98887643110 0111146788888887 31 23677788888888875321 1111
Q ss_pred HcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 648 REGGIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 648 ~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
...++.+.+.+.+.+...++.|+.+|..++.+. ++.....+. .+++.|+..+.+.++.+|..|.++|..+...
T Consensus 368 -~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 368 -EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 123555666667788899999999999999753 233333333 4788999999988999999999888877654
No 123
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.16 E-value=7.1e-05 Score=86.68 Aligned_cols=258 Identities=14% Similarity=0.077 Sum_probs=165.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-HH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~-k~ 522 (732)
+..++.+.+.|.+.++.++..|+.++..+.+.+++.- .++++.+..+|.+.|+.++..|+.+|..++..... ..
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3456788899999999999999999999998776532 26788888999999999999999999998764321 11
Q ss_pred HHHHcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHhccCchh-HHHHH--------------------
Q 004761 523 MIAEAGAIEPLIHVLKS---------------GNGGAKENSAAALFSLSVLEEY-KAKIG-------------------- 566 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~-------------------- 566 (732)
.+ ...++.++.+|.+ .++-.+...+.+|..+...+.. ...+.
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 22 2567777777653 2566777788888777654321 11100
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch--hHHH-------HHh------hchHHHHHHhc-CCChHHHHHHH
Q 004761 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE--NKAR-------IIQ------AGAVKHLVDLM-DPSTGMVDKAV 630 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--n~~~-------lv~------~G~V~~Ll~lL-~~~~~l~e~al 630 (732)
...++..++.+ ..++.....|...|..+..+.+ .|.. ++. ......++..+ +++..++..|+
T Consensus 294 ~~ea~~~i~~l--~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~al 371 (618)
T 1w63_A 294 LYETVLTIMDI--KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 00112222221 1123333344555554433221 1111 111 12234566666 77899999999
Q ss_pred HHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHH
Q 004761 631 ALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKE 710 (732)
Q Consensus 631 ~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~ 710 (732)
.+|..++..... .. .+..|.+++...+.+.+..++.++..+|..-+..... .++.|+.++..+...++.
T Consensus 372 elL~~l~~~~nv-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~-----~v~~ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 372 ELSFALVNGNNI-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW-----HIDTIMRVLTTAGSYVRD 440 (618)
T ss_dssp HHHHHHCCSSST-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH-----HHHHHHHHHHHTGGGSCS
T ss_pred HHHHHHcccccH-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH-----HHHHHHHHHHhccchhHH
Confidence 999999885432 22 3678888888889999999999999999853222222 268899999887665555
Q ss_pred HHHHHH-HHhhc
Q 004761 711 KAQQLL-SHFRN 721 (732)
Q Consensus 711 kA~~lL-~~l~~ 721 (732)
.+...+ ..+++
T Consensus 441 ~~~~~l~~ii~~ 452 (618)
T 1w63_A 441 DAVPNLIQLITN 452 (618)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 444444 44443
No 124
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.12 E-value=1.1e-06 Score=69.63 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=42.5
Q ss_pred CccccccCcccCCCceec--CCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIV--ASGQT-YERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~--~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
.+..|+||++-.+|||++ +|||. ||..|+.+|+..+ ..||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhh
Confidence 456899999999999998 99998 9999999999765 78999999875
No 125
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.08 E-value=3.8e-07 Score=75.73 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=39.7
Q ss_pred CccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
++..|+||++.+.|||+++|||. ||+.|+.+|. .||.||+++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 45679999999999999999999 9999999873 89999998865
No 126
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.08 E-value=1e-05 Score=101.23 Aligned_cols=272 Identities=12% Similarity=0.068 Sum_probs=183.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...+..+++.+.+++++.+..|...|.+..+.....-.--.....++.|+..|.+.+..++..|+.+|.+++..-.. ..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 34578899999999999999999988877644211000001113567788888889999999999999999754222 11
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH------HHHHhcchHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK------AKIGRSGAVKALVDLLG-SGTLRGRKDAATALFNL 596 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k------~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nL 596 (732)
-...++.|+..|.+++..+|..|+.+|..++..-... ..-.....+|.|+..+. +.++..+..|+.+|..+
T Consensus 84 --~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 --VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp --HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1235677778888888888988888888776421111 11112367899999998 47889999999999998
Q ss_pred ccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGS-QRGKENAASIL 674 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s-~~~~e~A~~~L 674 (732)
+...+....-.-..+++.|+..| +++..++..|+.+|..++...... + -...++.++..+.... ...+..++.++
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 75211100001245777888888 778889999999999998754321 2 1235788888776542 34566678888
Q ss_pred HHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..++...+..... .-..+++.++..+++.++.+|+.|..++..+.+.
T Consensus 239 ~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 239 AAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7777643321110 0135789999999888888898888888777554
No 127
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.07 E-value=3.7e-05 Score=84.61 Aligned_cols=265 Identities=12% Similarity=0.040 Sum_probs=176.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcCCc-hH-H
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSINDE-NK-A 522 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~~-~k-~ 522 (732)
+..++..+.+++.+.+..|-..|..+.+.+ ..+++..|+.++.+. +..++..|..+|.|+..... .. .
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 456777777889999999999998866421 125667788888664 68899999999999854321 00 0
Q ss_pred H-------H---HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC--CHHHHHHHH
Q 004761 523 M-------I---AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG--TLRGRKDAA 590 (732)
Q Consensus 523 ~-------i---~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~Al 590 (732)
. + .....-..|+..|.+.+..+ ..++.+|..++..+... -...+.++.|+..+.++ ++..+..|+
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 0 0 01122334667777776666 77777887776532110 01247899999999988 899999999
Q ss_pred HHHHHhccCc-hhHHHHHhhchHHHHHHhc-CC--ChHHHHHHHHHHHHHhCChhhHH--HHHHcCcHHHHHHHHhcCCH
Q 004761 591 TALFNLSIFH-ENKARIIQAGAVKHLVDLM-DP--STGMVDKAVALLANLSTVGEGRL--AIAREGGIPSLVEVVESGSQ 664 (732)
Q Consensus 591 ~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~--~~~l~e~al~iL~nLa~~~~~r~--~i~~~~~I~~Lv~lL~~~s~ 664 (732)
.+|..++..- .....-.-..+++.++..+ +. +..++..|+.++.++...-+... .....-.++.+...+.+.++
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (462)
T ss_dssp HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence 9999998632 1111111134777888888 54 68889999999998765322110 00111135556666677889
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 665 ~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..+..++.+|..++...++.....+..++++.++..+...++.++..|.+.+..+.+.
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999875544222222226677778888888889999999888777554
No 128
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.99 E-value=1.2e-06 Score=93.16 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=41.0
Q ss_pred CCccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 357899999999999999999999 999999988 689999998754
No 129
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.97 E-value=4.9e-06 Score=72.97 Aligned_cols=47 Identities=15% Similarity=0.381 Sum_probs=40.2
Q ss_pred CccccccCcccCCCc------------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDP------------------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dP------------------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
++-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 345799999999987 34789999999999999986 479999999763
No 130
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.94 E-value=6e-05 Score=76.12 Aligned_cols=180 Identities=11% Similarity=0.094 Sum_probs=133.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCc-hHHHHH
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENR-MIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDE-NKAMIA 525 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r-~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~-~k~~i~ 525 (732)
.+.+.+.+.++..+..|+..|..+....+..- ..+ ...++.|...+. +.+..++..|+.+|..|+..-. .-.. .
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 47788889999999999999999886532110 000 134667788884 8899999999999999984311 1111 1
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-chhH-
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENK- 603 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-~~n~- 603 (732)
-...++.|+..+.+.+..+|..|..+|..+...... ...++.+...|++.++.++..++.+|..+... ....
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 234688999999999999999999999988764321 24678899999999999999999999996443 2211
Q ss_pred -HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 604 -ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 604 -~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
...+ ..+++.|+.++ +.+..++..|..+|..++.
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1222 36889999999 8889999999999988865
No 131
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.88 E-value=8.5e-05 Score=74.99 Aligned_cols=183 Identities=14% Similarity=0.095 Sum_probs=134.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCchhHHHHHhh
Q 004761 532 PLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLG-SGTLRGRKDAATALFNLSIFHENKARIIQA 609 (732)
Q Consensus 532 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~ 609 (732)
.+.+.+.+.+...|..|+..|..+... +..... .-..+++.|..++. +.+..++..|+.+|..|+..-.....-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 367778888899999999999887653 111000 00146788888894 889999999999999998633221122234
Q ss_pred chHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CChHh-HH
Q 004761 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL-HSPKF-CT 686 (732)
Q Consensus 610 G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~-~~~~~-~~ 686 (732)
.+++.|++.+ +.+..+++.|..+|.+++..... ...++.+...+.+.++.+++.++..|..+.. .+++. ..
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 5889999999 88889999999999999875421 1246778888888899999999999999654 33431 12
Q ss_pred HHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 687 LVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 687 ~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..+. .++|.|+.++.+..+++|..|..+|..+...
T Consensus 172 ~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 172 KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2222 5799999999998999999999988877543
No 132
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.88 E-value=0.00081 Score=77.73 Aligned_cols=252 Identities=11% Similarity=0.110 Sum_probs=166.7
Q ss_pred chHHHHHHHh--cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 445 PYVKKLIEDL--NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 445 ~~i~~Lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
..++.+.+.| .+.++.++..|+.++..+.+.+++. +...++++.|..+|.+.|+.++..|+.+|..++.....
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4457788888 7889999999999999999876542 22248999999999999999999999999988754321
Q ss_pred HHHHcCCHHHHHH----HHcCC-------------CHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHhhc----
Q 004761 523 MIAEAGAIEPLIH----VLKSG-------------NGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDLLG---- 579 (732)
Q Consensus 523 ~i~~~g~l~~Lv~----lL~~~-------------~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~---- 579 (732)
.+ ...++.++. ++..+ ++-.+.....+|..+...+ +.+..+. ..+..++..+.
T Consensus 221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK 296 (621)
T ss_dssp HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence 11 123444444 33322 4557777788877776532 2222222 23444443321
Q ss_pred -----CCCH--HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCc
Q 004761 580 -----SGTL--RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGG 651 (732)
Q Consensus 580 -----~~~~--~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~ 651 (732)
+.+. .+...|+.++.++...++-. ..++..|..+| +.+.+++-.++..|..++........+. .-
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-----VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HH
Confidence 1122 67778888888886433221 24677888888 7788999999999999987643222232 34
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 652 IPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 652 I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
...++..+. +.+...+..|+.+|..++. +.+...+ +..|...+...+...++.+...+..+
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI-----VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 677778788 7888999999999999986 3444443 33455555555666666665555444
No 133
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.85 E-value=0.00039 Score=76.04 Aligned_cols=228 Identities=12% Similarity=0.083 Sum_probs=157.4
Q ss_pred HHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHHHHHHcC--CHHHHHHHHcC---------------C--CHHHHHHHHH
Q 004761 491 PLLSLLYS-EAQLTQEHAVTALLNLSINDENKAMIAEAG--AIEPLIHVLKS---------------G--NGGAKENSAA 550 (732)
Q Consensus 491 ~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g--~l~~Lv~lL~~---------------~--~~e~~~~Aa~ 550 (732)
.++..|.+ .+...+..++.+|..|...+..|..+.+.+ .+++++.++.. + ....+.+++-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 34555554 345667788999998988888888887543 36666654431 1 2456889999
Q ss_pred HHHHhccCchhHHHHHhcchH--HHHHHhhcCC-CHHHHHHHHHHHHHhccCch-h----HH-HHHhhchHHHHHHhc--
Q 004761 551 ALFSLSVLEEYKAKIGRSGAV--KALVDLLGSG-TLRGRKDAATALFNLSIFHE-N----KA-RIIQAGAVKHLVDLM-- 619 (732)
Q Consensus 551 ~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~~~-n----~~-~lv~~G~V~~Ll~lL-- 619 (732)
++|-|+..++....+...+.. +.|+.+++.. ...+.+-++.+|.||..... + .. .++..++ +++++.|
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999988877777766643 7788888764 48899999999999988641 1 12 2333444 5566666
Q ss_pred --CCChHHHHHHHHHHHHH-------hC---------------ChhhHH-HHH--------HcC--cHHHHHHHHhc---
Q 004761 620 --DPSTGMVDKAVALLANL-------ST---------------VGEGRL-AIA--------REG--GIPSLVEVVES--- 661 (732)
Q Consensus 620 --~~~~~l~e~al~iL~nL-------a~---------------~~~~r~-~i~--------~~~--~I~~Lv~lL~~--- 661 (732)
-.++++.+..-.+...| ++ +|..+. .+. +.+ .+..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 24666555433322222 11 122221 222 222 37889999973
Q ss_pred -------CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 662 -------GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 662 -------~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
.++....-||.=+..++++-|..+..+-+.|+-..++.|+.+.++++|..|..+++-+
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2466777788889999998899888888899999999999999999999998887655
No 134
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.6e-05 Score=63.77 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=40.3
Q ss_pred CCccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.++..|+||++-..|||+++|||. ||..|+.+ ...||.||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 467899999999999999999999 99999984 3689999998765
No 135
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.82 E-value=3.6e-05 Score=96.30 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=156.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchH---
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK--- 521 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k--- 521 (732)
..++.+++.|.+.++++|..|+.+|..++...... .+ ...++.|+..|.+++..++..|..+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 45788999999999999999999999998654331 11 135667888888888888999999998886431111
Q ss_pred ---HHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCc-h-hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 522 ---AMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLE-E-YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 522 ---~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~-~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
..-.....++.|+..+. +++...+..|+.+|..++... . ... .....++.|+..|.+.++.+++.|+.+|..
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11123457888999998 477899999999999887311 0 000 012467888888888889999999999999
Q ss_pred hccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHH--cCcHHHHHHHHhcCCHHHHHHHH
Q 004761 596 LSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAR--EGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~--~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
++...+.. + -...++.++..| ..+...+..++.++..++..... .+.. ...++.+++.+...++..++.|+
T Consensus 202 l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~ 276 (1230)
T 1u6g_C 202 LVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCI 276 (1230)
T ss_dssp HTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred HHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 98765432 2 235688888888 32233445567777766542211 1221 24588888888888888999999
Q ss_pred HHHHHHhcCC
Q 004761 672 SILLQLCLHS 681 (732)
Q Consensus 672 ~~L~~L~~~~ 681 (732)
.++..++...
T Consensus 277 ~~l~~l~~~~ 286 (1230)
T 1u6g_C 277 QAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHHC
Confidence 9998888753
No 136
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=3.3e-05 Score=64.01 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=44.6
Q ss_pred CCccccccCcccC--CCceecCCC-----cccchHHHHHHHhcC-CCCCCCCCCCCCCC-CCcc
Q 004761 237 PPYFRCPLSLELM--IDPVIVASG-----QTYERVFIQKWLDHG-LNICPKTRQTLAHT-NLIP 291 (732)
Q Consensus 237 p~~f~Cpi~~~lm--~dPV~~~~g-----~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~-~l~p 291 (732)
.++-.|+||++-+ .+|++++|+ |.|-+.||.+|+... ..+||+|+.++... .+.|
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 3567899999876 579999996 999999999999864 46899999998643 3444
No 137
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.69 E-value=0.0015 Score=75.46 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=170.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--ccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL--~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
+..+.+.|.++++.++-.|++.|..+.. ++ +.+ ..++.+..+| .+.++.++..|+.++.++..... ..+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~ 183 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLV 183 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhc
Confidence 5678889999999999999999999853 22 232 4567788888 78899999999999999875321 111
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc----CC-------------CHHHHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG----SG-------------TLRGRK 587 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----~~-------------~~~~~~ 587 (732)
-..+.++.+..+|.+.++.++.+|+.+|..++..+. ..+ ...+|.++..|. .+ ++-.+.
T Consensus 184 ~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi 259 (621)
T 2vgl_A 184 PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSV 259 (621)
T ss_dssp CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHH
T ss_pred CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHH
Confidence 124789999999998899999999999999876332 111 134454444332 21 466777
Q ss_pred HHHHHHHHhccCc--hhHHHHHhhchHHHHHHhc-C-C----------ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHH
Q 004761 588 DAATALFNLSIFH--ENKARIIQAGAVKHLVDLM-D-P----------STGMVDKAVALLANLSTVGEGRLAIAREGGIP 653 (732)
Q Consensus 588 ~Al~aL~nLs~~~--~n~~~lv~~G~V~~Ll~lL-~-~----------~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~ 653 (732)
..+..|..++..+ +.+..+.+ .+..++..+ + + ...+.-.|+.++..+...++... .++.
T Consensus 260 ~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~ 332 (621)
T 2vgl_A 260 KLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACN 332 (621)
T ss_dssp HHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHH
Confidence 7777777776532 23333333 344444332 1 1 22667778888887764433222 3566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchh-cCChHHHHHHHHHHHHhh
Q 004761 654 SLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQ-SGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 654 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~ 720 (732)
.|..++.+.++..+..|+..|..++...+. ..++. .....++..+. +.+..+|.+|..+|-.+-
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVK-THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 788888888999999999999999986542 12232 24667777777 777889999888876654
No 138
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.66 E-value=0.0012 Score=64.97 Aligned_cols=221 Identities=18% Similarity=0.106 Sum_probs=158.3
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE-NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKA 563 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~-~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~ 563 (732)
+.+..|..+|...|+.++.+|+.+|.++-.. +. -+.... ...++.++.++++.+..+...|+.+|..|.... -...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3577899999999999999999999998654 22 233333 347999999999999999999999999886532 1122
Q ss_pred HHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh
Q 004761 564 KIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG 642 (732)
Q Consensus 564 ~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~ 642 (732)
.+. -++.+|.+++.++++-....|+-.+..|...... .+++..+.+++ +.+..++..++.+|.+++...+.
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 222 2467888999999999999999999988443322 24677888888 88999999999999999875432
Q ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--hHhHHHHHhCCCHHHHHHch-hcCChHHHHHHHHHHHHh
Q 004761 643 RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS--PKFCTLVLQEGAVPPLVGLS-QSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 643 r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~--~~~~~~v~~~G~i~~L~~Ll-~~g~~~~k~kA~~lL~~l 719 (732)
... . .+.+.-+-.++.+.++..++.|..+|..+.+.- .+....+. ++....-.+. ..|.|..+.||...-..+
T Consensus 184 ~~i-~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 184 SGH-L-TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCC-G-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHH-H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 111 1 124455667788899999999999999998852 11111111 2233334455 578899999988766554
Q ss_pred h
Q 004761 720 R 720 (732)
Q Consensus 720 ~ 720 (732)
.
T Consensus 260 e 260 (265)
T 3b2a_A 260 D 260 (265)
T ss_dssp H
T ss_pred H
Confidence 3
No 139
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.66 E-value=8.3e-06 Score=74.33 Aligned_cols=119 Identities=22% Similarity=0.209 Sum_probs=90.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.++..|+++++.++..|+..|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 346788899998888888777777655431 237899999999999999999999988752
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
...++.|+..|++.++.+|..|+++|..+. ...+++.|+.++++.++.++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235889999999999999999999998774 23578999999998889999999988764
No 140
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.59 E-value=9e-06 Score=72.36 Aligned_cols=45 Identities=16% Similarity=0.426 Sum_probs=0.0
Q ss_pred cccccCcccCCCce-----------------e-cCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMIDPV-----------------I-VASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 240 f~Cpi~~~lm~dPV-----------------~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
=.|+||++-|.+|. + .+|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 47999999999853 2 489999999999999987 479999998753
No 141
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.58 E-value=1.5e-05 Score=72.61 Aligned_cols=119 Identities=21% Similarity=0.175 Sum_probs=90.4
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 486 CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565 (732)
Q Consensus 486 ~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 565 (732)
...++.|+.+|.++++.++..|+.+|.++.. ..++.|+..|++.++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4678889999999999999988888876531 136889999999999999999999988753
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHH
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLAN 635 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~n 635 (732)
..+++.|+.+|++.++.++..|+.+|.++. ...+++.|+.++ +++..++..|+..|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999875 245788999999 7788888888887754
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00019 Score=73.12 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=130.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHh-cCCHHHHHHhh-ccCCHHHHHHHHHHHHHhhcC-C-chHH-H
Q 004761 450 LIEDLNSTSNEIQASAAAELRL-LAKHNMENRMIIGN-CGAIPPLLSLL-YSEAQLTQEHAVTALLNLSIN-D-ENKA-M 523 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~~-~G~I~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~-~-~~k~-~ 523 (732)
+-+.+.+.++..+..|+..|.. +....+.......+ ...+..|...+ +..+..++..|+.+|..|+.. . ..-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566789999999999999999 87443211000011 12466777788 678999999999999999842 1 1111 1
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHH-H-hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI-G-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i-~-~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
.. .-.++.++..+++....++..+..+|..+...-+- ... . -...++.|+..|++.++.++..++.+|..+.....
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 11 22688899999888888888888888777642100 001 0 11467889999999999999999999998876433
Q ss_pred h---HH-HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 602 N---KA-RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 602 n---~~-~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
. .- ..+...++|.|.+++ +.+..++..|..+|..++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 11 222257899999999 8889999999998888764
No 143
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.42 E-value=0.0069 Score=71.85 Aligned_cols=233 Identities=18% Similarity=0.137 Sum_probs=157.3
Q ss_pred HHHHHHHhcCCC--------HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 004761 447 VKKLIEDLNSTS--------NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 447 i~~Lv~~L~s~~--------~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 518 (732)
+..|...|.+.+ +.++..|+-.|....-.+. + ..+++.|..+|..++..+.+.|..+|+.+-...
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence 455666665444 4566667777776543321 1 134667888888777777778888888765544
Q ss_pred chHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 004761 519 ENKAMIAEAGAIEPLIHVL-KSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFNL 596 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nL 596 (732)
.|.. ++..|+..+ .+.+..++..++..|.-+.. +....++.+++.|.. .++-++..|+.++.--
T Consensus 504 gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alglA 569 (963)
T 4ady_A 504 GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIALA 569 (963)
T ss_dssp CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4433 245555544 34467788888888776543 334567888888764 5677888777777654
Q ss_pred ccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHH-HhcCCHHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEV-VESGSQRGKENAASI 673 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~l-L~~~s~~~~e~A~~~ 673 (732)
....+|. .+|+.|+..+ +.+..++..|+..|+.++...+ ..++.++.+ ++++++.+|..|+.+
T Consensus 570 yaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalA 635 (963)
T 4ady_A 570 YAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFA 635 (963)
T ss_dssp TTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHH
T ss_pred hcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4444443 3667777777 6677888888888888765432 357777774 466899999999999
Q ss_pred HHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 674 LLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 674 L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
|..+|.+++. .. ++..|..++.+.++.+++.|...|..+-.
T Consensus 636 LGli~aGn~~--~~-----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 636 LGIACAGKGL--QS-----AIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHTSSSCC--HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHhccCCCc--HH-----HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 9999987653 22 35567777777788888888888887744
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.41 E-value=0.0049 Score=64.32 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=131.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.+..+++.|.+.+....+.++..|+.+-..+...-..++..+|+..|+......+...+..++++|.+|-........++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 35778899988888899999999998554555666667777889999999999999999999999999988777776666
Q ss_pred -HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch-hHHHHHhc-c---------hHHHHHHhhc---CCCHHHHHHHH
Q 004761 526 -EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE-YKAKIGRS-G---------AVKALVDLLG---SGTLRGRKDAA 590 (732)
Q Consensus 526 -~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~-g---------~i~~Lv~lL~---~~~~~~~~~Al 590 (732)
....+..+..++.+.+..+...|+.+|..+....+ +...+... . .+..|+.+|. .++.+.+..|+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 55788999999998788899999999999976543 33333221 1 3679999997 67888888888
Q ss_pred HHHHHhccC-c--hhHHHHH----hhchHHHHHHhc
Q 004761 591 TALFNLSIF-H--ENKARII----QAGAVKHLVDLM 619 (732)
Q Consensus 591 ~aL~nLs~~-~--~n~~~lv----~~G~V~~Ll~lL 619 (732)
..|-.+... + +.+..++ +.|+-..+...+
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l 314 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHL 314 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHH
Confidence 877666443 2 2233333 345555566656
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.39 E-value=0.0029 Score=65.98 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=119.2
Q ss_pred HHhhcCCCHHHHHHHHHHHHH-hccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHc-Cc
Q 004761 575 VDLLGSGTLRGRKDAATALFN-LSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIARE-GG 651 (732)
Q Consensus 575 v~lL~~~~~~~~~~Al~aL~n-Ls~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~-~~ 651 (732)
++-|.+++.+.++.++.-|.. ++....-...++..+++..|+.+. ..+.+....++.+|.+|..+..|-..++.+ ..
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f 203 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT 203 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence 344456778888888888888 566677888999999999999999 778999999999999999999999888864 47
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhC--------C--CHHHHHHchh---cCChHHHHHHHHHHHH
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQE--------G--AVPPLVGLSQ---SGTPRAKEKAQQLLSH 718 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~--------G--~i~~L~~Ll~---~g~~~~k~kA~~lL~~ 718 (732)
|..+..++.+....+...|..+|..+|..++.+...+.++ | -...|+.+++ +++...+.+|..++.-
T Consensus 204 I~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~ 283 (339)
T 3dad_A 204 IQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK 283 (339)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 9999999998888999999999999999776544444331 2 3778999998 6788999999888765
Q ss_pred h
Q 004761 719 F 719 (732)
Q Consensus 719 l 719 (732)
+
T Consensus 284 l 284 (339)
T 3dad_A 284 T 284 (339)
T ss_dssp H
T ss_pred H
Confidence 4
No 146
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00063 Score=69.20 Aligned_cols=189 Identities=8% Similarity=0.074 Sum_probs=131.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH-hccC-chhHHHHHh-cchHHHHHHhh-cCCCHHHHHHHHHHHHHhccCch-hHHH-H
Q 004761 533 LIHVLKSGNGGAKENSAAALFS-LSVL-EEYKAKIGR-SGAVKALVDLL-GSGTLRGRKDAATALFNLSIFHE-NKAR-I 606 (732)
Q Consensus 533 Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~-~~~k~~i~~-~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~~~~-n~~~-l 606 (732)
+...+.+.+..-|..|+..|.. +... ......... ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456778889999999999988 7631 110000111 14577888888 68899999999999999985221 1111 1
Q ss_pred HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHH--HcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-
Q 004761 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIA--REGGIPSLVEVVESGSQRGKENAASILLQLCLHSP- 682 (732)
Q Consensus 607 v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~--~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~- 682 (732)
...-+++.+++.+ +....+++.+..+|..++..-+. .... -...++.|...+.+.++.+++.++.+|..++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2234789999999 77788888888888888653210 0000 00246778888888899999999999999887544
Q ss_pred --HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 683 --KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 683 --~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
......+...++|.|..++.+.++.+|..|..+|..+...
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2222233357899999999999999999999999887654
No 147
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.30 E-value=0.031 Score=66.95 Aligned_cols=262 Identities=17% Similarity=0.172 Sum_probs=179.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh---hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc--CCc
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME---NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI--NDE 519 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~---~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~--~~~ 519 (732)
+.+..|.+.+...... ..|+..+..++..... .--.+. +.++.++..+......++..|..++..+.. ++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 4567777777654333 7888899999855421 111222 567777777777788888888877776643 232
Q ss_pred hHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 520 NKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
.. ...++.|+..|.+. ....+..|+.+|..|+... ...++.. ..||.+-+.+-+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 32 23588899888765 5889999999999998633 3445443 7899999999999999999999999999
Q ss_pred ccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
|..-+|+.. ...+|.|++.+ +++. +..++..|..-....+.-..-. +=.+|.|.+-|...+...+..++.++-
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEEc
Confidence 886555431 35788999998 5533 4555554444322222111000 002455555566668888999999999
Q ss_pred HHhc--CChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhcccc
Q 004761 676 QLCL--HSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 676 ~L~~--~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~~~~ 724 (732)
|||+ .+|.....++ ...+|.|......- +|++|+.|..++..|.+...
T Consensus 277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999 5666555444 45788888877654 69999999999998876543
No 148
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.08 E-value=0.011 Score=62.90 Aligned_cols=246 Identities=12% Similarity=0.022 Sum_probs=148.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
...++.+.+.+.+.++-.--.+..+++..++. + =++..|.+=+.++++-++-.|+++|.++...+- -.
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~~----- 138 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-LQ----- 138 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-HH-----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-HH-----
Confidence 44677888999888877777777887763321 1 245567777888999999999999999864331 11
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARII 607 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv 607 (732)
...+++-+.|.+.++-++..|+.+...|.... .+.+ .+.++.+-+++.+.++.++..|+.+|+.+...+..
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~----- 209 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL----- 209 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-----
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-----
Confidence 23556777888899999999999998887533 3333 26889999999999999999999999999875421
Q ss_pred hhchHHHHHHhc-CC---ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 608 QAGAVKHLVDLM-DP---STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 608 ~~G~V~~Ll~lL-~~---~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
++..|+.-+ .. ++-.+-..+.++..++...+. -.....+..+...+++.++.+.-.|+.++..+......
T Consensus 210 ---a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~ 283 (355)
T 3tjz_B 210 ---AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK 283 (355)
T ss_dssp ---HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence 344444444 21 222222233333333322100 01123456666778888999999999999887552221
Q ss_pred hHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 684 FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 684 ~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
+. ..++..|..++.+.++.+|=.|...|..+...+++
T Consensus 284 ----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 284 ----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred ----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 11 34466777777777777777776666555554443
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.84 E-value=0.0058 Score=65.14 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=127.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+..+.+.+.++++-++-.|++.|..+...+. .+ ...+.+.+.|.+.++-++..|+-+...|.... .+. +
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m------~~-~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~-v- 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTM------LQ-AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV-V- 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT------HH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH-H-
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH------HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH-H-
Confidence 6788999999999999999999999875432 11 34556777888999999999999998886543 222 2
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC---CHHHHHHHHHHHHHhccCchhH
Q 004761 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG---TLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~---~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.+.++.+-.++.+.++-+..+|.++|..+...+. .++..|+.-+..+ ++-++-.-++.+..++..++
T Consensus 175 ~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~-- 244 (355)
T 3tjz_B 175 KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED-- 244 (355)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--
Confidence 2689999999999999999999999999976442 1344455544443 34444333444333333220
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
.-.....++.+..+| ..+..++-.|+.++..+...+.. .. ..++..|..++.+.++..+--|+..|..+....|
T Consensus 245 -~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 245 -GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp -------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred -hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 012234556666677 66788888899888887553221 11 2346667777888888899999998888888666
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHH
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQ 713 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~ 713 (732)
..... .-.-+..++.+++.-...-|.
T Consensus 320 ~~v~~-----~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 320 SAVTA-----CNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp -------------------------------
T ss_pred HHHHH-----HHHHHHHHccCCcHhHHHHHH
Confidence 53332 233345555555544444443
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.64 E-value=0.37 Score=52.73 Aligned_cols=195 Identities=14% Similarity=0.108 Sum_probs=128.8
Q ss_pred CchHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCh---hhHHHHHhcCCH-HHHH-HhhccCCHHHHHHHHHHHHHhhcC
Q 004761 444 TPYVKKLIEDLN-STSNEIQASAAAELRLLAKHNM---ENRMIIGNCGAI-PPLL-SLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 444 ~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~---~~r~~i~~~G~I-~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
...+..+++.|+ ..+.+.....+..+..+...++ ..-..+.+.... ..+. .++..++.-.+..+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 455778899887 4567888899999998887765 222233333222 2233 334444455556666555555422
Q ss_pred -CchHHHHHHcCCHH--HHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcC-----------
Q 004761 518 -DENKAMIAEAGAIE--PLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGS----------- 580 (732)
Q Consensus 518 -~~~k~~i~~~g~l~--~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~----------- 580 (732)
......+ ...+. -++..|... +...+..++.+|..|...+++|..+... +.+++++.+++.
T Consensus 156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 1111111 11122 355556553 3556667889999999999999998865 357777765541
Q ss_pred ----C--CHHHHHHHHHHHHHhccCchhHHHHHhhchH--HHHHHhc--CCChHHHHHHHHHHHHHhCCh
Q 004761 581 ----G--TLRGRKDAATALFNLSIFHENKARIIQAGAV--KHLVDLM--DPSTGMVDKAVALLANLSTVG 640 (732)
Q Consensus 581 ----~--~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V--~~Ll~lL--~~~~~l~e~al~iL~nLa~~~ 640 (732)
+ ..+.+..++.+++-|+..++....+...++. +.|++++ +....++.-++++|.||....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~ 303 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR 303 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc
Confidence 1 2456788999999999999888888887755 6777777 677889999999999998754
No 151
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.33 Score=46.04 Aligned_cols=212 Identities=12% Similarity=0.177 Sum_probs=143.0
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
.++..++.+|..+-..++.+|+.++.+++.. ++...- .+..|+.+++ +.........+.++..++.... .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence 3567788899888889999999999998764 332222 2444555544 4556666677777777765221 1
Q ss_pred HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH
Q 004761 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
+. .+.+|.+..=.+-++++.+.+-..+|..+...++. .-.+++.-+..++ +++..-.-.|+..+..+..+.
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--- 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--- 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT---
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC---
Confidence 11 13567777777788999999999999988764332 2235667778888 666555556666666664432
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
..-+ ...+|.|..+|..++.-++..|+.+|.+++..++..+..+. ..+ .=+...++-++++..+.|..+.-
T Consensus 176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~-----~kl-~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI-----KRL-EELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH-----HHH-HHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH-----HHH-HHhcCcHHHHHHHHHHHHHHHHH
Confidence 2222 35799999999999999999999999999999988665443 222 33344456677777666655543
No 152
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.50 E-value=0.25 Score=49.37 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=152.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH-hcCCHHHHHHhh-------ccC-----CHHHHHHHHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG-NCGAIPPLLSLL-------YSE-----AQLTQEHAVTALL 512 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~-~~G~I~~Lv~lL-------~s~-----~~~v~~~A~~~L~ 512 (732)
.+..++..|..+ +.+..|+.+|..--..-++---.+= ..|.+..|++=. +.+ ...-..+|+..|.
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 355667666544 4577777666543222222222222 347666664422 111 1334578888888
Q ss_pred HhhcCCchHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCch--hHHHHHhcchHHHHHHhhcCCCHHH
Q 004761 513 NLSINDENKAMIAEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEE--YKAKIGRSGAVKALVDLLGSGTLRG 585 (732)
Q Consensus 513 nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~ 585 (732)
-++.+++.|..+..+...-.|..+|+..+ +..|..+++++..|...++ .-..+...+++|..+..+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 88999999999999987777778887664 4588999999999986543 3344556799999999999999999
Q ss_pred HHHHHHHHHHhccCchhHHHHH-------h-hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcC--cH-
Q 004761 586 RKDAATALFNLSIFHENKARII-------Q-AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREG--GI- 652 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv-------~-~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~--~I- 652 (732)
+..|..++..+-.++.+-..+. . ..++..++.-+ .++..+....+.+-..|+.++..|.++...- .+
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 9999999998877765433332 2 23444444444 6788899999999999999999998887521 11
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHH
Q 004761 653 -PSLVEVVESGSQRGKENAASILLQL 677 (732)
Q Consensus 653 -~~Lv~lL~~~s~~~~e~A~~~L~~L 677 (732)
..+..+++ +++..+..-...+.|+
T Consensus 242 d~tf~~~l~-~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQVLK-DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHHHHT-SCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 11222232 4666666665555554
No 153
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.49 E-value=0.42 Score=56.79 Aligned_cols=233 Identities=14% Similarity=0.055 Sum_probs=153.0
Q ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC--------HHHHHHHHHHHHHh
Q 004761 446 YVKKLIEDLN---STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA--------QLTQEHAVTALLNL 514 (732)
Q Consensus 446 ~i~~Lv~~L~---s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~--------~~v~~~A~~~L~nL 514 (732)
.+..|-+.|. +.++.++..|+..|..+...... .++..|...|.+++ +.++..|+..|+..
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3566667776 66788899999999998765421 14667888887654 56777777788765
Q ss_pred hcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc-CCCHHHHHHHHHHH
Q 004761 515 SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG-SGTLRGRKDAATAL 593 (732)
Q Consensus 515 s~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL 593 (732)
.....+. .+++.|..+|.+.+...+..|+.+|.-+-.-..+ ..++..|+..+. +.+..+++.++.+|
T Consensus 465 ~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 465 AMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp STTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 4443332 2467788888877766666666666544221111 135566666643 45678888888888
Q ss_pred HHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHH
Q 004761 594 FNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENA 670 (732)
Q Consensus 594 ~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A 670 (732)
..+....+ ..++.+++.| +.++.++..++.+++.-....... .+|..|++.+. +.++.++..|
T Consensus 533 Gll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraA 598 (963)
T 4ady_A 533 ALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAA 598 (963)
T ss_dssp HHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHH
Confidence 87765433 3566777777 566666666666666443332221 24666666553 4577889999
Q ss_pred HHHHHHHhcCChHhHHHHHhCCCHHHHHH-chhcCChHHHHHHHHHHHHhhc
Q 004761 671 ASILLQLCLHSPKFCTLVLQEGAVPPLVG-LSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 671 ~~~L~~L~~~~~~~~~~v~~~G~i~~L~~-Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+..|.-+..++++ .++.++. +++++++.+|..|..+|.++..
T Consensus 599 ViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 599 VIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp HHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999887776542 4555555 5567889999999999988754
No 154
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.63 Score=44.15 Aligned_cols=214 Identities=20% Similarity=0.206 Sum_probs=144.1
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCchH
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~k 521 (732)
++..+..+++.|..+-+.+|..|+..+..+++.-++...-+ +.-|+.+++ +...........+++.++...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--- 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--- 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence 35678899999999999999999999999998877644333 334556654 455555455667887777432
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
..++ .+.+|.|..-..-|++.++.+.+.+|..++... -..+ .+++.-+..++.+.+..-+-.|+..+. .-.+
T Consensus 102 Pe~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~--~~v~rdi~smltskd~~Dkl~aLnFi~---alGe 173 (253)
T 2db0_A 102 PELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLM--ASIVRDFMSMLSSKNREDKLTALNFIE---AMGE 173 (253)
T ss_dssp HHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHH--HHHHHHHHHHTSCSSHHHHHHHHHHHH---TCCT
T ss_pred HHHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHH--HHHHHHHHHHhcCCChHHHHHHHHHHH---HHhc
Confidence 1111 134666666677899999999999999887522 1111 135566777888777555555555544 4445
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
|..+-+ .-.+|.|..+| +.+.-+.-.|+.+|.+++...+ -|.. |...++-+...|..++......|..+..
T Consensus 174 n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 174 NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 554433 35788899999 7788888889999999998654 3333 3334455666777777777766666554
No 155
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.43 E-value=0.0034 Score=50.78 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=38.3
Q ss_pred ccccccCcccCCCcee-cCCCcccchHHHHHHHhcC-CCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHG-LNICPKTRQTLAH 286 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~ 286 (732)
--.|+||.+++..=+. ..|||.|=..||.+||... ..+||.|+++...
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3569999999874433 2699999999999999753 4789999988653
No 156
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.37 E-value=0.0035 Score=48.61 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=39.8
Q ss_pred CccccccCcccCCCceecCCCc-----ccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQ-----TYERVFIQKWLDH-GLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~ 285 (732)
+.-.|.||++-..+|.+.||.. -|=+.|+.+|+.. ++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456999999888998888653 7889999999974 6689999998875
No 157
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.29 E-value=0.046 Score=65.51 Aligned_cols=260 Identities=12% Similarity=0.102 Sum_probs=171.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc---hHH-
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE---NKA- 522 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~---~k~- 522 (732)
+..+++.+...+...+..|+..+..+.......+ ....+.+..|...+...... +.|+.++..|+.... ..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence 4456666766555566778888888765432111 11125566677777654333 999999999985421 122
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc--CchhHHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhccC
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV--LEEYKAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLSIF 599 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~ 599 (732)
.++ +.++.++..+.+....++..|..++..+.. .+... ..++|.|+..|.+. ..+.+..|+.+|..|+..
T Consensus 92 ~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 92 YIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred chH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 222 468888888777667777776666655532 12111 34689999999765 589999999999999875
Q ss_pred chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004761 600 HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~ 678 (732)
........=..+||.+.+.+ +..+.+...|..++..+|..-+++. -...||.|++-+.+++. ...++..|...+
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~t 239 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATT 239 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence 43222222257899999999 8889999999999999987544322 13469999999987643 555677776654
Q ss_pred cC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 679 LH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 679 ~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
.- .-+.-... =.+|.|..-+...+...|++++-+..+|.+.-.+
T Consensus 240 fv~~v~~~~l~---~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 240 FVAEVTPATLS---IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp CCSCCCHHHHH---HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred eEeeecchhHH---HHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 41 11111111 1367777777777888899999999999876544
No 158
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.97 E-value=0.0099 Score=65.50 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=155.5
Q ss_pred CccccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhc-------cCC---HHHH
Q 004761 437 RSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC--GAIPPLLSLLY-------SEA---QLTQ 504 (732)
Q Consensus 437 ~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--G~I~~Lv~lL~-------s~~---~~v~ 504 (732)
+.+|.-+ ....|+..|-++.+++|-.|+-.||.+.+.....-...... ...-.|+..|. .+| ..++
T Consensus 168 ~~eWPfq--fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVR 245 (800)
T 3oc3_A 168 PIENVLD--FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVR 245 (800)
T ss_dssp CCCSGGG--TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHH
T ss_pred CCCCHHH--HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehH
Confidence 3445543 77889999999999999999999999886543210000111 22223333331 112 5689
Q ss_pred HHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH-hcchHHHHHHhhcCCCH
Q 004761 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG-RSGAVKALVDLLGSGTL 583 (732)
Q Consensus 505 ~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~ 583 (732)
|.|+.+|+.+ ..-... ...+..|+..+.....+++-.++-.|.++. +.+. -.++++.++.-|++.+.
T Consensus 246 ETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL~~Ld~Vv~aVL~GL~D~DD 313 (800)
T 3oc3_A 246 DAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFVEDKDGLCRKLVSLLSSPDE 313 (800)
T ss_dssp HHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGCCCHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHHHHHHHHHHHHHhhcCCccc
Confidence 9999999888 542211 344555555567778999999999999881 1111 23678889999999999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh
Q 004761 584 RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~ 660 (732)
+++..|+.+|.-++ .++.. ..++..+.+.| ++=..-.-..+.+|+.|+..+.. +-.....+|.|...++
T Consensus 314 DVRAVAAetLiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLR 385 (800)
T 3oc3_A 314 DIKLLSAELLCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFT 385 (800)
T ss_dssp HHHHHHHHHHTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGT
T ss_pred HHHHHHHHHhhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhc
Confidence 99999999999888 22111 12344455555 21112244566777887776631 1111245888888999
Q ss_pred cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHH
Q 004761 661 SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717 (732)
Q Consensus 661 ~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~ 717 (732)
+.-..+|..++.+|..+. +......+ ...++-..++.+++.+..+.+
T Consensus 386 HtITSVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 386 SPVPEVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CSSHHHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999988777 22222222 223444556666666555443
No 159
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.23 Score=50.72 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=118.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhH--HHHH-hc-CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC--C-c-hH
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENR--MIIG-NC-GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN--D-E-NK 521 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r--~~i~-~~-G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~-~-~k 521 (732)
|-+.|.+.++..|..|+..|..+....+... .... .. ...+.+-..+...|..++..++.+|..+... . . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5688999999999999999988775433211 1111 12 3455666788889999999999999887542 1 1 11
Q ss_pred --HHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 522 --AMIAEAGAIEPLIHV-LKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 522 --~~i~~~g~l~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
....-...++.|+.- |.++...++..|..++..+....... ..+++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 122234467777764 67777888888887776664321111 1235667777888899999999999987754
Q ss_pred CchhH---HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 004761 599 FHENK---ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 599 ~~~n~---~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~ 639 (732)
.-+.. ....-..+++.+..+| +.+..+++.|..++..+-..
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 21110 1111123444556666 78899999999998887654
No 160
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.44 E-value=0.0028 Score=65.80 Aligned_cols=47 Identities=19% Similarity=0.539 Sum_probs=38.0
Q ss_pred ccccccCcccCCC----cee----cCCCcccchHHHHHHHhcC----------CCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMID----PVI----VASGQTYERVFIQKWLDHG----------LNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~d----PV~----~~~g~ty~r~~I~~~~~~~----------~~~cP~~~~~l~ 285 (732)
...|+||+..+.+ |-. ..|||.|-..||.+||... ..+||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3469999999988 543 3699999999999999742 146999999875
No 161
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.30 E-value=0.013 Score=49.55 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=40.1
Q ss_pred ccccCcccCCCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 241 RCPLSLELMIDPV-IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 241 ~Cpi~~~lm~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
.||+|.-.+..=. ++||+|.||-.|+..|...+..+||.|+.++..-+..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 4777777665544 57999999999999999888789999999876533333
No 162
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.013 Score=61.68 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=53.1
Q ss_pred CccccccCcccCCCcee-cCCCcc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 238 PYFRCPLSLELMIDPVI-VASGQT--YERVFIQKWLD-HGLNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~-~~~g~t--y~r~~I~~~~~-~~~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
-.+.|||++..|+.||- ..|.|. ||...+..... .+...||+|++.+...+|+.+.-+...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 36899999999999998 579997 99988877654 45678999999999999999987777654
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.13 E-value=0.65 Score=48.17 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=108.7
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHH----HHHcC-CCHHHHHHHHHHHHHhccCchhH
Q 004761 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI----HVLKS-GNGGAKENSAAALFSLSVLEEYK 562 (732)
Q Consensus 488 ~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv----~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k 562 (732)
.+..|..++ +...+.+--++-+|.-+..++.....+.+.+.-..++ ..+.. +.+..+..++.+++|+..+...+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 345566665 3333344445555554444444444444332222333 33322 34667899999999999988888
Q ss_pred HHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh-HHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHh
Q 004761 563 AKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN-KARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 563 ~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n-~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa 637 (732)
..+... .+++.+...+...+...+..+...++|++...-+ +..=....++..+..++ ..+.+....++-+|++|+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 777643 5666666666667888999999999999874211 10000112444444455 457788899999999998
Q ss_pred CChhhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHH
Q 004761 638 TVGEGRLAIAREGGIPSLVEVVES--GSQRGKENAASI 673 (732)
Q Consensus 638 ~~~~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~ 673 (732)
..+.....+.+.-++...++-+.+ ..+++.+.|-.+
T Consensus 263 ~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 263 SDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp TTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred hCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 765544555554445544444433 345555544333
No 164
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.94 E-value=0.75 Score=46.63 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=117.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcC-CHHHHHHhhccCCHHHHHHHHHHHHHhhc---CCchHHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCG-AIPPLLSLLYSEAQLTQEHAVTALLNLSI---NDENKAM 523 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G-~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~~~~k~~ 523 (732)
+.+...|-+.+...+..|+..|......+++ .++...+ .++.+.--+.+.+..+...++.+|..+.. ..+.+..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3566667777888888899888887654432 2222211 12222222346788888888888776521 1111111
Q ss_pred HHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 IAE-AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~-~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
-.+ .-.+|.|+.-+.+....+|..+-.+|..+.. ......+++.+++-+++.+.+.+..++..+..+-...+.
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 111 2368889998877778888888777766542 112235678888888999999999999998888553322
Q ss_pred HHHHHhhchH---HHHHHhc-CCChHHHHHHHHHHHHHh
Q 004761 603 KARIIQAGAV---KHLVDLM-DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 603 ~~~lv~~G~V---~~Ll~lL-~~~~~l~e~al~iL~nLa 637 (732)
. ...++ +.+..++ +.+..+++.|+.++..+-
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 24467 9999999 889999999998887653
No 165
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.69 E-value=2.2 Score=44.20 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHh--hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh---hHHHHHHcCcHHH
Q 004761 581 GTLRGRKDAATALFNLSIFHENKARIIQ--AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE---GRLAIAREGGIPS 654 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~n~~~lv~--~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~---~r~~i~~~~~I~~ 654 (732)
..+..+..+++++.|+-.++..+..+.. ..+++.+...+ +.+..++..+..++.|++..-- ..+.. ...+..
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~ 237 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL 237 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence 3566788999999999999888887765 24555566555 6678888888889999975311 00110 113344
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc-CChHHHHHHHHHHHHh
Q 004761 655 LVEVVES-GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS-GTPRAKEKAQQLLSHF 719 (732)
Q Consensus 655 Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l 719 (732)
+..+++. .+.++...++.+|.+|...+++..+.+...|+-..+-.+... ..+++++.|+.+|.+|
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 4455543 578888899999999998777766666667777666666665 3578999998888653
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.61 Score=47.44 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=119.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCch---hHHHHHh-c-chHHHHHHhhcCCCHHHHHHHHHHHHHhccCch------
Q 004761 533 LIHVLKSGNGGAKENSAAALFSLSVLEE---YKAKIGR-S-GAVKALVDLLGSGTLRGRKDAATALFNLSIFHE------ 601 (732)
Q Consensus 533 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~k~~i~~-~-g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~------ 601 (732)
|-..|.+.+...|..|.-.|..+..... ....... . ...+.+-..+.+.+..+...++.+|..++..-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567888888999988888876543211 1111111 2 344566678888999999999999988865321
Q ss_pred hHHHHHhhchHHHHHHh-c-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 602 NKARIIQAGAVKHLVDL-M-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~l-L-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
......-..+++.|++- | +....+++.++.++..++........ .+..++..+.+.++..+..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 12233345678888875 6 77788888888888776542211111 23455566778899999999988887654
Q ss_pred C-ChHh--HHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 680 H-SPKF--CTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 680 ~-~~~~--~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
. +... ....+. .+++.+..++.+.++.+|..|..++..+-.+-
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 2 1111 111111 24556777888889999999999988776653
No 167
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.23 E-value=0.036 Score=58.30 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=54.2
Q ss_pred CCccccccCcccCCCcee-cCCCcc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVI-VASGQT--YERVFIQKWLD-HGLNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~-~~~g~t--y~r~~I~~~~~-~~~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
.-.+.|||++..|+.||- ..|.|. ||...+..... .+...||+|++.+...+|..+.-+...+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 347899999999999998 579988 99998888765 45678999999999999999887777765
No 168
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.09 E-value=1.7 Score=45.21 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=142.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHH----HHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMI----IGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 518 (732)
.+.+..|+..|..-+.+.+..+.....++.+.....+-. +.. ...+..|+.-. +++++--.+-..|..+..++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhH
Confidence 456778888888888899998888888888765433222 221 12222222222 24455556666777777777
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhH-HHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYK-AKIGRS--GAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k-~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
.....+...+.+..+...+..++-++...|..++..|... .... ..+... ..+...-.||.+++--+++.+++.|.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 7777777878888999999999999999999999887543 2222 222222 46677778999999999999999999
Q ss_pred HhccCchhHHHHHh----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 595 NLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 595 nLs~~~~n~~~lv~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
.|-..+.|...|.. ..-+..++.+| +.+..++-.|..++...+.+|.
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99999888776554 46778888888 8899999999999998776653
No 169
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.54 E-value=1.7 Score=52.52 Aligned_cols=248 Identities=12% Similarity=0.082 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc------cCCHHHHHHHHHHHHHhhcCCc-------------h
Q 004761 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY------SEAQLTQEHAVTALLNLSINDE-------------N 520 (732)
Q Consensus 460 ~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~------s~~~~v~~~A~~~L~nLs~~~~-------------~ 520 (732)
..+..|...|..++..-. ..+.. -.++.+...+. +.+...++.|+.++..++.... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456778888888886543 11211 12333334444 4567889999999999874311 1
Q ss_pred HHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 521 KAMIAEAGAIEPLIHVLKSG---NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
-..+. ...++..|.+. .+-+|..|+++|..++..- .+.. -..+++.++..|.+.++.++..|+.||.+++
T Consensus 452 l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 452 VVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 11111 11233345555 7889999999999987632 1221 2357888888888888999999999999998
Q ss_pred cCch---------hHHHHHh--hchHHHHHHhc-CCC---hH--HHHHHHHHHHHHhCCh--hhHHHHHHcCcHHHHHHH
Q 004761 598 IFHE---------NKARIIQ--AGAVKHLVDLM-DPS---TG--MVDKAVALLANLSTVG--EGRLAIAREGGIPSLVEV 658 (732)
Q Consensus 598 ~~~~---------n~~~lv~--~G~V~~Ll~lL-~~~---~~--l~e~al~iL~nLa~~~--~~r~~i~~~~~I~~Lv~l 658 (732)
...+ .+..+.. ..+++.|+.++ ... .. ..+.++.+|..++..- +... ... ..++.|...
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~ 602 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEI 602 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHH
Confidence 7421 2222322 45666677777 320 11 2244555555443211 1100 000 123444444
Q ss_pred Hh----c-CCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 659 VE----S-GSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 659 L~----~-~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+. + .++.....++.+|..++.. +++....+ ...++|.+..+++.........+..++..+-+
T Consensus 603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 32 2 3556667788888887775 44433333 34467888888887655555556665555543
No 170
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.43 E-value=1.9 Score=43.13 Aligned_cols=146 Identities=18% Similarity=0.100 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhhcCCc--hHHHHHHcCCHHHHH
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA-----QLTQEHAVTALLNLSINDE--NKAMIAEAGAIEPLI 534 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~-----~~v~~~A~~~L~nLs~~~~--~k~~i~~~g~l~~Lv 534 (732)
.-.|+..+.-+|.+ ++.|..+.++...-.|-.+|+..+ .-++-.++.+++.|...++ ....+.+.+.++..+
T Consensus 73 VcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 34677777888865 588999999887777888886532 4577888889988876533 345666888999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc--------chHHHHHH-hhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 535 HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS--------GAVKALVD-LLGSGTLRGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 535 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--------g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
+.+..|+.-.+..|+.++..+..++..-..+-.. .++..+|. +.+..+++..+..+++-..|+.++..+..
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999998888777655444321 23333443 34567899999999999999999888876
Q ss_pred HHh
Q 004761 606 IIQ 608 (732)
Q Consensus 606 lv~ 608 (732)
+..
T Consensus 232 L~~ 234 (268)
T 2fv2_A 232 LRQ 234 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 171
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.19 E-value=0.044 Score=47.01 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred CccccccCccc-CCCcee--cCCCcccchHHHHHHHh
Q 004761 238 PYFRCPLSLEL-MIDPVI--VASGQTYERVFIQKWLD 271 (732)
Q Consensus 238 ~~f~Cpi~~~l-m~dPV~--~~~g~ty~r~~I~~~~~ 271 (732)
+++.|+||.+. ..+||. +.||++||+.|++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 56889999964 899999 99999999999999543
No 172
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.99 E-value=0.95 Score=54.71 Aligned_cols=217 Identities=10% Similarity=0.060 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhc-----CCHHH----HHHhhccC---CHHHHHHHHHHHHHhhcCCchHHH
Q 004761 456 STSNEIQASAAAELRLLAKHNMENRMIIGNC-----GAIPP----LLSLLYSE---AQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 456 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-----G~I~~----Lv~lL~s~---~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+.++..+..|+..+..++........ -... ...+. ++..|.+. ++.++..|+++|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH
Confidence 45677888899999998753210000 0000 12222 33345555 8999999999999987542 1221
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch---------hHHHHHh--cchHHHHHHhhcCCC---HH--HHH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE---------YKAKIGR--SGAVKALVDLLGSGT---LR--GRK 587 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---------~k~~i~~--~g~i~~Lv~lL~~~~---~~--~~~ 587 (732)
-...++.++..|.+.+..++..|+.+|.+++...+ .+..+.. ...++.|+.++.... +. ...
T Consensus 494 --l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 --LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred --HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 22357778888887788899999999999886421 2333332 256777888887641 11 234
Q ss_pred HHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc------CCChHHHHHHHHHHHHHhCC--hhhHHHHHHcCcHHHHHHH
Q 004761 588 DAATALFNLSIFH-ENKARIIQAGAVKHLVDLM------DPSTGMVDKAVALLANLSTV--GEGRLAIAREGGIPSLVEV 658 (732)
Q Consensus 588 ~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL------~~~~~l~e~al~iL~nLa~~--~~~r~~i~~~~~I~~Lv~l 658 (732)
.++.+|..++..- +.-.. .-..+++.|+..+ ..+......++.+|..++.. ++....+ ....++.+..+
T Consensus 572 ~l~~al~~vv~~~~~~~~p-~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~i 649 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQP-LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHH
Confidence 5566666554321 11111 1123445555555 12445556677777777653 2222222 23356777777
Q ss_pred HhcCCHHHHHHHHHHHHHHh
Q 004761 659 VESGSQRGKENAASILLQLC 678 (732)
Q Consensus 659 L~~~s~~~~e~A~~~L~~L~ 678 (732)
+........+.+..++..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 76654445555666655444
No 173
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.46 E-value=2 Score=43.49 Aligned_cols=177 Identities=14% Similarity=0.060 Sum_probs=108.7
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHH----HHcCCCHHHHHHHHHHHHHhcc---CchhHHH
Q 004761 492 LLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIH----VLKSGNGGAKENSAAALFSLSV---LEEYKAK 564 (732)
Q Consensus 492 Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~----lL~~~~~e~~~~Aa~~L~~Ls~---~~~~k~~ 564 (732)
+...|.+.|.+-+..|+..|..... .+...+.. .++.++. .+.+.+..+...++.+|..+.. ..+++-.
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4455556676666667666654321 12222221 2333333 2335566666666666655421 1111111
Q ss_pred HHh-cchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 565 IGR-SGAVKALVDLLGSGTLRGRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 565 i~~-~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
-.+ .-.+|.|++-+.+....++..+-.++..++. ++. ..+++.+++-+ +.+...++.++..+..+-...
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~- 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNA- 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-
Confidence 111 2468999999988888888877777766543 222 23566677767 778899999999888874422
Q ss_pred hHHHHHHcCcH---HHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 642 GRLAIAREGGI---PSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 642 ~r~~i~~~~~I---~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
|-. ...++ +.+.+++.+.+..++..|+.++..+...-++
T Consensus 199 G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 199 GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 111 23468 9999999999999999999999988775333
No 174
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.89 E-value=11 Score=41.21 Aligned_cols=128 Identities=20% Similarity=0.187 Sum_probs=89.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
..++...+ ++...++-|+..|....++-++... -+|..++.+...+|..++.+|+..|..+|.+ ++...
T Consensus 32 ~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k---- 100 (507)
T 3u0r_A 32 QVILDGVK-GGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR---- 100 (507)
T ss_dssp HHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH----
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh----
Confidence 44555444 4688899999999999999887554 4677899999999999999999999999988 55443
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
..+.|+++|...+..-....-.+|..|...+ ..+.+..|..-+..++..+++.++..|.
T Consensus 101 -iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 101 -VADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp -HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3567889999877554443333333332211 1244555655555567778888777775
No 175
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=87.74 E-value=14 Score=36.27 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=100.4
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc----C-------CHHHHHHHHHHHHHhhc
Q 004761 450 LIEDLNSTS-NEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS----E-------AQLTQEHAVTALLNLSI 516 (732)
Q Consensus 450 Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s----~-------~~~v~~~A~~~L~nLs~ 516 (732)
.|+.|++.. .+....-+..|+..-+.++ ..-..+ ..||+..|+.+|.. . +...+..++.+|..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 455555432 2222334444443333333 223333 46788888888852 1 35667788888888876
Q ss_pred CCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--h-HHHHH----------hcchHHHHHHhhcC-C
Q 004761 517 NDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--Y-KAKIG----------RSGAVKALVDLLGS-G 581 (732)
Q Consensus 517 ~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i~----------~~g~i~~Lv~lL~~-~ 581 (732)
+..+...+. ..+++..|+..|.+..+.++..++-+|..++..++ + ...+. +..-...+++.++. .
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~ 163 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 163 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC
Confidence 666666555 45789999999988889999999888888776543 3 22221 22345667787774 3
Q ss_pred CHHHHHHHHHHHHHhccCch-------hHHHHHhhchHHHHHHh
Q 004761 582 TLRGRKDAATALFNLSIFHE-------NKARIIQAGAVKHLVDL 618 (732)
Q Consensus 582 ~~~~~~~Al~aL~nLs~~~~-------n~~~lv~~G~V~~Ll~l 618 (732)
+.+.+..++..+-.+...++ -|..+...|..+.+-.+
T Consensus 164 ~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 207 (233)
T 2f31_A 164 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 207 (233)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 45555555555555554443 23445566766665444
No 176
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.43 E-value=14 Score=44.37 Aligned_cols=210 Identities=15% Similarity=0.091 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh---c--cCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 004761 457 TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL---Y--SEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAI 530 (732)
Q Consensus 457 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL---~--s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l 530 (732)
.++..+..|+..+..++..-.... ...++.++.++ . ..++.++..++++|..++.. ..+...+ ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 466788899999999986543221 13344444433 2 23789999999999988742 1121111 1245
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcCC--CHHHHHHHHHHHHHhccC-c-hhHH
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGSG--TLRGRKDAATALFNLSIF-H-ENKA 604 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~--~~~~~~~Al~aL~nLs~~-~-~n~~ 604 (732)
+.|+..|. +.++..|+.++.+++. +.+..+.. ...+..|..++..+ +...+..+..++..++.. + +.+.
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 66666663 6788999999999984 33444443 26677777888763 467788888888887653 2 3333
Q ss_pred HHHhhchHHHHHHhc----C-C--ChHHHHHHHHHHHHHh---CChhh-----H------HHH--HHcCcHHHHHHHHhc
Q 004761 605 RIIQAGAVKHLVDLM----D-P--STGMVDKAVALLANLS---TVGEG-----R------LAI--AREGGIPSLVEVVES 661 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL----~-~--~~~l~e~al~iL~nLa---~~~~~-----r------~~i--~~~~~I~~Lv~lL~~ 661 (732)
..+ ...+++++..+ . . +..........+..|+ ..-.. . ..+ .....++.+..++..
T Consensus 624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 222 23444444433 1 1 2222333333333332 21000 0 000 112356666666653
Q ss_pred --CCHHHHHHHHHHHHHHhc
Q 004761 662 --GSQRGKENAASILLQLCL 679 (732)
Q Consensus 662 --~s~~~~e~A~~~L~~L~~ 679 (732)
.++...+.++.++..++.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 367889999998888765
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=87.23 E-value=15 Score=39.23 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=108.0
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHh
Q 004761 448 KKLIEDLNSTS-NEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNL 514 (732)
Q Consensus 448 ~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nL 514 (732)
...|+.|.++. .+.....+..|+.-.+.++ ..-..+. .+|+..|+.+|.. .+...+..++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 44566666553 2222344555554433333 2323344 6788999988851 2457788888888888
Q ss_pred hcCCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--h-HHHHH----------hcchHHHHHHhhcC
Q 004761 515 SINDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--Y-KAKIG----------RSGAVKALVDLLGS 580 (732)
Q Consensus 515 s~~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i~----------~~g~i~~Lv~lL~~ 580 (732)
..+..+...+. ...++..|+..|.+..+.++..++-+|..++..++ + ...+. +..-+..+++.|+.
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 76666666565 45789999999999899999999999988877543 2 22221 22346778888887
Q ss_pred -CCHHHHHHHHHHHHHhccCch-------hHHHHHhhchHHHHHHh
Q 004761 581 -GTLRGRKDAATALFNLSIFHE-------NKARIIQAGAVKHLVDL 618 (732)
Q Consensus 581 -~~~~~~~~Al~aL~nLs~~~~-------n~~~lv~~G~V~~Ll~l 618 (732)
.+.+.+..++..+-.+....+ -|..+...|..+.+-.+
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 456666666666655555443 23455667877776653
No 178
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=87.23 E-value=0.86 Score=45.46 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=37.7
Q ss_pred ccccccCcccCCCceec-CCCcccchHHHHHHHhcC-CCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHG-LNICPKTRQTLAHT 287 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~ 287 (732)
-..|.||.++..-=+.= .||+.|-+.|+.+|+... ...||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34599999987744332 289999999999999753 46899999886553
No 179
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=86.83 E-value=9.8 Score=37.49 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=92.6
Q ss_pred HHHHHHcCCHHHHHHHHcC----C-------CHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCCCHHHHHH
Q 004761 521 KAMIAEAGAIEPLIHVLKS----G-------NGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSGTLRGRKD 588 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~----~-------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~ 588 (732)
...+ ..+|+..|+.+|.. + +......++.+|..+..+......+... +++..|+..|.+.++.++..
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 3344 35667777776642 1 2345667888888888777666666654 88999999999899999999
Q ss_pred HHHHHHHhccCch--h-HHHHHhh----------chHHHHHHhc--CCChHHHHHHHHHHHHHhCChh---hH----HHH
Q 004761 589 AATALFNLSIFHE--N-KARIIQA----------GAVKHLVDLM--DPSTGMVDKAVALLANLSTVGE---GR----LAI 646 (732)
Q Consensus 589 Al~aL~nLs~~~~--n-~~~lv~~----------G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~---~r----~~i 646 (732)
++..|..+|..++ + ...+.++ .-...+++.+ .........++..+-.+...++ .| .++
T Consensus 116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 195 (233)
T 2f31_A 116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 195 (233)
T ss_dssp HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999988764 4 4444332 2445577777 3345566666666666666553 23 333
Q ss_pred HHcCcHHHHHHHHhc-CCHHH
Q 004761 647 AREGGIPSLVEVVES-GSQRG 666 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~~-~s~~~ 666 (732)
.. -|+..+++.++. .++..
T Consensus 196 ~~-~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 196 MR-LGLHQVLQELREIENEDM 215 (233)
T ss_dssp HH-TTHHHHHHHHHHCCCHHH
T ss_pred HH-CChHHHHHHHhccCCHHH
Confidence 44 456566665554 44443
No 180
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.49 E-value=36 Score=40.70 Aligned_cols=209 Identities=12% Similarity=0.021 Sum_probs=115.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHH---c--CCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHH
Q 004761 499 EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVL---K--SGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVK 572 (732)
Q Consensus 499 ~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL---~--~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~ 572 (732)
.+...++.|+.+|..++....... ...++.++.++ . +.++.++..++++|..++..- .+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 466788999999998875422111 13344444433 3 246889999999999887421 111111 14667
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh--hchHHHHHHhc-C--CChHHHHHHHHHHHHHhCC--hhhHHH
Q 004761 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ--AGAVKHLVDLM-D--PSTGMVDKAVALLANLSTV--GEGRLA 645 (732)
Q Consensus 573 ~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~--~G~V~~Ll~lL-~--~~~~l~e~al~iL~nLa~~--~~~r~~ 645 (732)
.|+..|. +.+...|+.++.+++.. .+..+.. .+++..+..++ . .+......++.++..++.. ++....
T Consensus 550 ~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7777772 67889999999999953 2233332 45666666666 3 3566777777777776542 233322
Q ss_pred HHHcCcHHHHHH----HHhcC--CHHHHHHHHHHHHHHhcC-----Ch-----------HhHHHHHhCCCHHHHHHchhc
Q 004761 646 IAREGGIPSLVE----VVESG--SQRGKENAASILLQLCLH-----SP-----------KFCTLVLQEGAVPPLVGLSQS 703 (732)
Q Consensus 646 i~~~~~I~~Lv~----lL~~~--s~~~~e~A~~~L~~L~~~-----~~-----------~~~~~v~~~G~i~~L~~Ll~~ 703 (732)
... ..++.++. ++... ++..+...+..|..|+.. .. +.... ....+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHh
Confidence 222 12333333 33332 444445555555554431 10 00111 123467777777754
Q ss_pred C--ChHHHHHHHHHHHHhh
Q 004761 704 G--TPRAKEKAQQLLSHFR 720 (732)
Q Consensus 704 g--~~~~k~kA~~lL~~l~ 720 (732)
. ++.+.+.|..+++.+-
T Consensus 703 ~~~~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAI 721 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 3 5688888888887753
No 181
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=84.18 E-value=0.83 Score=45.79 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHH
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 716 (732)
.+.|..++...+..++..++..| | .+.|..| +..+..++..|...|
T Consensus 196 ~~~L~~Ll~D~d~~VR~~aa~~l-----------------~-~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 196 GDDLLELLHDPDWTVRLAAVEHA-----------------S-LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGGCSSHHHHHHHHHHS-----------------C-HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcC-----------------C-HHHHHHc-cCCCHHHHHHHHHHh
Confidence 34555566666666666666553 1 4666667 777788888876544
No 182
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=83.91 E-value=23 Score=37.69 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=94.4
Q ss_pred HHHHHHcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCCCHHHHHH
Q 004761 521 KAMIAEAGAIEPLIHVLKS-----------GNGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSGTLRGRKD 588 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~-----------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~ 588 (732)
...+. .+|+..|+.+|.. .+......++.+|..+..+......+... .++..|+..|.+..+.++..
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 45555 6678888888752 12356677888898888777666666655 89999999999999999999
Q ss_pred HHHHHHHhccCch--h-HHHHHh----------hchHHHHHHhc-C-CChHHHHHHHHHHHHHhCChh---hH----HHH
Q 004761 589 AATALFNLSIFHE--N-KARIIQ----------AGAVKHLVDLM-D-PSTGMVDKAVALLANLSTVGE---GR----LAI 646 (732)
Q Consensus 589 Al~aL~nLs~~~~--n-~~~lv~----------~G~V~~Ll~lL-~-~~~~l~e~al~iL~nLa~~~~---~r----~~i 646 (732)
|+..|..+|..++ + ...+++ ..-...+++.| . .+......++..+-.+...++ .| .++
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 261 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 261 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999998764 3 444433 23456677777 3 455666667777776766543 33 333
Q ss_pred HHcCcHHHHHHHHhc
Q 004761 647 AREGGIPSLVEVVES 661 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~~ 661 (732)
... |+..++..++.
T Consensus 262 ~~~-Gl~~il~~lr~ 275 (383)
T 3eg5_B 262 MRL-GLHQVLQELRE 275 (383)
T ss_dssp HHT-THHHHHHHHTT
T ss_pred HHC-ChHHHHHHHhc
Confidence 344 55555555654
No 183
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=81.42 E-value=44 Score=40.44 Aligned_cols=218 Identities=12% Similarity=0.036 Sum_probs=126.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhc------CC
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSI------ND 518 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~------~~ 518 (732)
.+..+++.+.+++.+.+..|-..|..+-+.. ++...+..+|. +.+..++..|+.+|.|... .+
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 3556666666666777778888887765432 55566666664 4678899999999988742 22
Q ss_pred chHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSG-----NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
+.+..+. ...+..+...-..+ +..++...+.++..++..+-. -...+.++.|+.+++ .++..+..++.+|
T Consensus 87 ~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 87 DHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 2333332 22333333322111 244566666666666542111 012378899999986 5566677777777
Q ss_pred HHhccC-----c----hhH-----HHHHh--hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHH
Q 004761 594 FNLSIF-----H----ENK-----ARIIQ--AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSL 655 (732)
Q Consensus 594 ~nLs~~-----~----~n~-----~~lv~--~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~L 655 (732)
..|+.. . ..+ ..+.. ..++..+...+ ..+..+...++.++.+....-+. ..+.+...+..+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHH
Confidence 777631 1 111 11222 12233334444 34567888889888877654432 223445556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 656 VEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 656 v~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
.+.+. .++..+..|+.+|..+...
T Consensus 241 ~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 63222 2678888899998888764
No 184
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=80.63 E-value=44 Score=35.45 Aligned_cols=176 Identities=17% Similarity=0.158 Sum_probs=104.6
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhh
Q 004761 449 KLIEDLNSTS-NEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 449 ~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs 515 (732)
..|+.|.+.. .+.....+..|+..-+.++ ..-..+. .+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 3455555443 2212234444544333333 2223333 5788888888752 14567788888888887
Q ss_pred cCCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--h-HHHHH----------hcchHHHHHHhhcC-
Q 004761 516 INDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--Y-KAKIG----------RSGAVKALVDLLGS- 580 (732)
Q Consensus 516 ~~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i~----------~~g~i~~Lv~lL~~- 580 (732)
.+..+...+. ..+++..|+..|.+..+.++..++-+|..++..++ + ...+. +..-+..+|+.++.
T Consensus 87 N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 87 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 6665655555 45789999999988888999888888887776543 2 22221 22345668888874
Q ss_pred CCHHHHHHHHHHHHHhccCch-------hHHHHHhhchHHHHHHhc-CCChHH
Q 004761 581 GTLRGRKDAATALFNLSIFHE-------NKARIIQAGAVKHLVDLM-DPSTGM 625 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~-------n~~~lv~~G~V~~Ll~lL-~~~~~l 625 (732)
.+.+.+..++..+-.|...++ -|..+...|..+.+-.+- ..++.+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 445656555555555555443 244566778777765444 344443
No 185
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=80.58 E-value=21 Score=37.99 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=91.3
Q ss_pred cchHHHHHHhhcC----C-------CHHHHHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHH
Q 004761 568 SGAVKALVDLLGS----G-------TLRGRKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLA 634 (732)
Q Consensus 568 ~g~i~~Lv~lL~~----~-------~~~~~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~ 634 (732)
.+++..|+.+|.. + +......++.||..|..+..+...++. .+++..|...| .....+...++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3556666666531 1 245567788999999888777776665 57888888888 667788888999999
Q ss_pred HHhCChh--h-HHHHHH----------cCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCh--H----hHHHHHhCCCH
Q 004761 635 NLSTVGE--G-RLAIAR----------EGGIPSLVEVVES-GSQRGKENAASILLQLCLHSP--K----FCTLVLQEGAV 694 (732)
Q Consensus 635 nLa~~~~--~-r~~i~~----------~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~--~----~~~~v~~~G~i 694 (732)
.+|..++ | ...+.+ ..-...++..+.. .+.+.+-.+...+-.+....+ + .+..+...|+.
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9988664 6 444432 1235667777764 444555544444444554322 2 44556678887
Q ss_pred HHHHHchhcCChHHH
Q 004761 695 PPLVGLSQSGTPRAK 709 (732)
Q Consensus 695 ~~L~~Ll~~g~~~~k 709 (732)
+.|-.+-..+++...
T Consensus 206 ~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 206 QVLQELREIENEDMK 220 (386)
T ss_dssp HHHHHHTTCCCHHHH
T ss_pred HHHHHHhccCChhHH
Confidence 777766655665543
No 186
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.65 E-value=18 Score=43.82 Aligned_cols=140 Identities=8% Similarity=-0.042 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC---CH--HHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 004761 457 TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE---AQ--LTQEHAVTALLNLSIN-DENKAMIAEAGAI 530 (732)
Q Consensus 457 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~---~~--~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l 530 (732)
.++..+..++.+++.++..-.+....-.-..+++.|+.++.+. +. .++..++++|+..+.- ..+.. +. ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L-~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HH-HHHH
Confidence 5788999999999999865433322111124677888877631 23 3344566777765421 11111 11 1234
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh------cchHHHH----HHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR------SGAVKAL----VDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~------~g~i~~L----v~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
..|+..+...++.++..|++++.+|+. +.+..+.. ...++.+ ...+..-.......+..++..+...-
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 445555555668899999999999985 33344431 1133433 33444456666777777888776643
No 187
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=78.35 E-value=53 Score=39.04 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=84.3
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHH
Q 004761 497 YSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVL---KSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVK 572 (732)
Q Consensus 497 ~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL---~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~ 572 (732)
.+.+...++.++.++..++..-... ....++.++..+ ..+++.++..+++++..++.. ..+... -..+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHH
Confidence 4567888999999999987542110 012344444443 334677899999999888752 111111 236788
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh--hchHHHHHHhc-C--CChHHHHHHHHHHHHHhCC
Q 004761 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ--AGAVKHLVDLM-D--PSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 573 ~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~--~G~V~~Ll~lL-~--~~~~l~e~al~iL~nLa~~ 639 (732)
.++..|.+ +.++..|+.+|.+++.. .+..+.. ..++..|..++ . -+......++.+++.++..
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 88888865 78889999999999852 2222221 34555556666 3 2456777778888887653
No 188
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=77.65 E-value=26 Score=41.78 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=95.4
Q ss_pred cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh---ccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 004761 455 NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL---YSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAI 530 (732)
Q Consensus 455 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL---~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l 530 (732)
.+.++..+..++.++..++..-... ....++.++..+ ..+++.++..++++|..++.. ..+. .. -...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHHH
Confidence 4567788888999999988653221 123344455444 235788999999999988742 1122 22 23678
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCc--hhHH
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGSG--TLRGRKDAATALFNLSIFH--ENKA 604 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~--~~~~~~~Al~aL~nLs~~~--~n~~ 604 (732)
+.|+..|.+ +.++..|+.+|.+++. +.+..+.. ...+..|..++..+ +...+..+..++..+...- +...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888854 7889999999999984 22222222 14556666666653 4677888888888887533 2333
Q ss_pred HHHhhchHHHHHHhc
Q 004761 605 RIIQAGAVKHLVDLM 619 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL 619 (732)
..+ ...++++...+
T Consensus 608 ~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 608 KNL-HSLISPYIQQL 621 (963)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH
Confidence 322 34455555444
No 189
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=77.55 E-value=2.7 Score=46.71 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=106.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..+..++..+....++++..++-.|+.+ ++--.. -.+.++.++..|.+.|.+++..|+.+|.-++ .++...
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DLL~~-----Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~-- 333 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYL-KEFVED-----KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD-- 333 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGGCCC-----HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH--
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHH-HHHHHH-----HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHH--
Confidence 3456677777888899999999999988 211010 1356778888889999999999999997777 221111
Q ss_pred HHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 525 AEAGAIEPLIHVLKSGN--GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~--~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
..+..+...|.+.+ .......+..|..|...+.. .-.....+|.|..++++.-+.++.+++.+|..+.
T Consensus 334 ---~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----- 403 (800)
T 3oc3_A 334 ---LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----- 403 (800)
T ss_dssp ---HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-----
T ss_pred ---HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-----
Confidence 12333444444321 11222233344444332211 0011278899999999999999999999998877
Q ss_pred HHHHHhhchHHHHHHhc--CCChHHHHHHHHHHH
Q 004761 603 KARIIQAGAVKHLVDLM--DPSTGMVDKAVALLA 634 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~ 634 (732)
...+++.+.+-+ ..+..+.+.+..+..
T Consensus 404 -----~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 -----EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp -----CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -----hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 223455555544 778888888877764
No 190
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=76.53 E-value=82 Score=38.06 Aligned_cols=218 Identities=13% Similarity=0.039 Sum_probs=132.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhc-----CC
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSI-----ND 518 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~-----~~ 518 (732)
..+..+++.+.+++.+.+..|-..|..+-+.. ++...+..+|. +.++.++--|+.+|.+... -+
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 45677887777777677778888887765442 45555556664 4678899999999987643 12
Q ss_pred chHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSG-----NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
...........+..+......+ ..-++...+.++..++..+-.. .....++.++.+++.+ +.....++..|
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~---~Wp~~l~dL~~~l~~~-~~~~~~~L~iL 161 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSSSS-VNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHTTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh---hchHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 2222222333455454433221 2234444555555554321000 1247888899988653 45567777777
Q ss_pred HHhccC---------chhHHHH-----Hh--hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHH
Q 004761 594 FNLSIF---------HENKARI-----IQ--AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSL 655 (732)
Q Consensus 594 ~nLs~~---------~~n~~~l-----v~--~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~L 655 (732)
..|+.. ...|..- .. ..++..+..+| ..+..+...++.++......-. -..+.+.+.++.+
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l 240 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHHH
Confidence 665431 1122221 11 12344444444 4567788889999998877543 2345567778888
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHHhc
Q 004761 656 V-EVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 656 v-~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
. .++. ++..++.|+.+|..+..
T Consensus 241 ~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 241 STKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CHHHHHHHHHHHHHHHc
Confidence 8 7774 57899999999999987
No 191
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=71.09 E-value=26 Score=38.21 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHhcc-CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHH
Q 004761 580 SGTLRGRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE 657 (732)
Q Consensus 580 ~~~~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~ 657 (732)
.++...++.|...|..... .++-. ..++..+++++ +.+..++..|+.-|-.+|.. +... .....|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHHH
Confidence 3457777777777665543 33332 23556777777 67777888888888888876 3322 23567788
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHH
Q 004761 658 VVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716 (732)
Q Consensus 658 lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 716 (732)
+|.+.++......-.+|..+...++. |.+..|+.-+.+|++.+|+++...|
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHH
Confidence 88888877777777777777776655 3344455555556777777766655
No 192
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.07 E-value=7.9 Score=31.75 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=37.3
Q ss_pred ccccccCccc-----CCCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLEL-----MIDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 239 ~f~Cpi~~~l-----m~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.-.|.||++= =-+|.+. .|+...||.|.+-=..+|+..||.|+.++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3569999863 1235454 4889999999998889999999999988854
No 193
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=70.70 E-value=1.1e+02 Score=32.03 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=89.0
Q ss_pred HHHhccCchh-HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHH
Q 004761 552 LFSLSVLEEY-KAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDK 628 (732)
Q Consensus 552 L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~ 628 (732)
|.+|..++.+ -+-++...++..+...+...+....++.++.|...+....-+..= -...+|.++..+ .++.+++-.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcceEEe
Confidence 3455555544 556777888899989999999999999999998877654322110 135778888888 788899999
Q ss_pred HHHHHHHHhCChhhHHH-HHHcCcHHHHHHHHhc-------CCHHHHHHHHHHHHHH
Q 004761 629 AVALLANLSTVGEGRLA-IAREGGIPSLVEVVES-------GSQRGKENAASILLQL 677 (732)
Q Consensus 629 al~iL~nLa~~~~~r~~-i~~~~~I~~Lv~lL~~-------~s~~~~e~A~~~L~~L 677 (732)
.-+.|.|++.+.....+ .+..|+|+.|-..+.. .+..-+..||.++++-
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 99999999988765444 4567889998887632 2334455666666553
No 194
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=70.62 E-value=1e+02 Score=37.34 Aligned_cols=220 Identities=13% Similarity=0.005 Sum_probs=132.6
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcC-----
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSIN----- 517 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~----- 517 (732)
-..+..++..+.+++.+.+..|-..|..+-+ ++ ++...+..+|. +.++.++--|+.+|.+....
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L 96 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKIL 96 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhC
Confidence 3456778888888888878888888876654 33 44555555564 45789999999999886431
Q ss_pred CchHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHH
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSG-----NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
+.....-.....+..+...-..+ ++..+...+.++..++..+-.. .....++-++.++.. ++......+.+
T Consensus 97 ~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 97 PRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 22222222333455555443322 3445555555555554321000 123677888887754 45567777788
Q ss_pred HHHhccC--c-------hhHH-----HHHh--hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHH
Q 004761 593 LFNLSIF--H-------ENKA-----RIIQ--AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPS 654 (732)
Q Consensus 593 L~nLs~~--~-------~n~~-----~lv~--~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~ 654 (732)
|..|+.. . ..|. .+.. ..+++.+..+| ..+..+...++.+|......-+. ..+.+.+.++.
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~ 251 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHH
Confidence 8777642 1 1111 2222 12333344444 45777888899999998886542 34566777777
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 655 LV-EVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 655 Lv-~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
++ .++ .++..+..|+.+|..+...
T Consensus 252 L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 252 LIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 74 555 4688999999999999875
No 195
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=70.24 E-value=1.5e+02 Score=35.66 Aligned_cols=217 Identities=12% Similarity=0.043 Sum_probs=125.1
Q ss_pred HHHHHH-HhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC---CHHHHHHHHHHHHHhhc--CCc
Q 004761 447 VKKLIE-DLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE---AQLTQEHAVTALLNLSI--NDE 519 (732)
Q Consensus 447 i~~Lv~-~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~---~~~v~~~A~~~L~nLs~--~~~ 519 (732)
|...++ .+.. .+++.+.+|-..|..+-+.. ++......+|.++ +..++--|+.+|.+.-. .++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSS----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 444443 3333 26788888888887775442 4455566677543 68888888888876532 333
Q ss_pred ----hHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCH-HHHHHHHHHH
Q 004761 520 ----NKAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTL-RGRKDAATAL 593 (732)
Q Consensus 520 ----~k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~Al~aL 593 (732)
.+..+. ...+..+...-. .+..-++...+.+|..+....-. -.....++.|+.++..++. .+....+++|
T Consensus 78 ~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 78 SNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp TSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 333332 223333333100 13355777777777666542100 0223678888888876443 3455556666
Q ss_pred HHhccC----c-----h--hH-----HHHHhh---chHHHHHHhc-----CCChHHHHHHHHHHHHHhCChhhHHHHHHc
Q 004761 594 FNLSIF----H-----E--NK-----ARIIQA---GAVKHLVDLM-----DPSTGMVDKAVALLANLSTVGEGRLAIARE 649 (732)
Q Consensus 594 ~nLs~~----~-----~--n~-----~~lv~~---G~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~~r~~i~~~ 649 (732)
..|+.. . . .| ..+.+. -+++..+.+| ..+..++..++.+|......-.. ..+.+.
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~ 232 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNE 232 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-Hhhhcc
Confidence 644321 0 0 11 122221 1234444444 35777888899999888775432 344455
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 650 GGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 650 ~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
+.++.+.+++. ++..++.|+.+|..+...
T Consensus 233 ~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 233 PCMNLLYSFLQ--IEELRCAACETMTEIVNK 261 (980)
T ss_dssp HHHHHHHHHTT--SHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHcC--ChHHHHHHHHHHHHHHHc
Confidence 56777777775 488999999999999875
No 196
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=70.02 E-value=20 Score=33.40 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
..+..+.||+|+.++.+ .-...||+|+.+-.
T Consensus 134 ~~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 134 EIKKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp CCSCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 44567889887766541 22358999997643
No 197
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=68.14 E-value=55 Score=32.21 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=93.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHH-hhcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhhch
Q 004761 534 IHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVD-LLGSGTLRGRKDAATALFNLSI-FHENKARIIQAGA 611 (732)
Q Consensus 534 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~ 611 (732)
..+.++...++|..|+.+|..+ .. ...+++.+.. +-.+.+-++++.+..++..++. ....+ .
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-------~ 140 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-------A 140 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------T
T ss_pred HHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------H
Confidence 3455566688999999888776 21 1235666666 4556778999999999998875 22221 5
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHH-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 004761 612 VKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAR-EGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVL 689 (732)
Q Consensus 612 V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~-~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~ 689 (732)
++.+.... +++..++..|...+.--+..+.-+ .+ .-.++.|-.+..+.+.-++....+.|..++..+|+.+..++
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 66777777 888888877766554322221110 00 11345555566677888999999999999999999888877
Q ss_pred hC
Q 004761 690 QE 691 (732)
Q Consensus 690 ~~ 691 (732)
+.
T Consensus 218 ~~ 219 (240)
T 3l9t_A 218 KN 219 (240)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 198
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=65.79 E-value=4.1 Score=34.19 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=43.8
Q ss_pred CCCCCC-CccccccCcccCCCceecC--CC----cccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004761 232 SGVPIP-PYFRCPLSLELMIDPVIVA--SG----QTYERVFIQKWLDHGLNICPKTRQTLAHTNL 289 (732)
Q Consensus 232 ~~~~~p-~~f~Cpi~~~lm~dPV~~~--~g----~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 289 (732)
..+.-| +.+.|||+++.-+.=|.+. -| .-||..++.+-...| ..=|.+|.|++...+
T Consensus 19 ~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~sMI 82 (102)
T 2kkx_A 19 ERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITASII 82 (102)
T ss_dssp TTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCTTTE
T ss_pred hhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCHhhE
Confidence 344445 5778999999999999874 22 249999999998877 456999999876543
No 199
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=64.40 E-value=58 Score=33.96 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=86.0
Q ss_pred HHHhccCchh-HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHH-cCcHHHHHHHHh-cCCHHHHH
Q 004761 593 LFNLSIFHEN-KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAR-EGGIPSLVEVVE-SGSQRGKE 668 (732)
Q Consensus 593 L~nLs~~~~n-~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~-~~~I~~Lv~lL~-~~s~~~~e 668 (732)
|.||..++.| ..-++++++|..+...+ .++.++....+.+|-.++....-. ... ...+|.++..+. ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~--~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA--KTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG--TSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh--hccccccchHHHHHhccCCCcceEE
Confidence 4455565544 45789999999999999 889999999999998876643211 111 235788888775 57889999
Q ss_pred HHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC
Q 004761 669 NAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT 705 (732)
Q Consensus 669 ~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~ 705 (732)
...+.|.+...+.......++..|+++.|...+..-+
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~ 380 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYP 380 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCC
Confidence 9999999999988788888899999999999887543
No 200
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=63.62 E-value=1.1e+02 Score=31.27 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=96.5
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 530 IEPLIHVLKSG------NGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 530 l~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
+..+..++++| +.+....|+..|..+|..-..-..|... ..+..|+ +.....+..++.|.++|.....+++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 44556667776 3445678888898888776666666652 5555555 3334567789999999998888665
Q ss_pred hH-HHHHh--hchHHHHHHhc-C-------CChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC--CHHHHH
Q 004761 602 NK-ARIIQ--AGAVKHLVDLM-D-------PSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG--SQRGKE 668 (732)
Q Consensus 602 n~-~~lv~--~G~V~~Ll~lL-~-------~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e 668 (732)
.. ..+.+ ...|..+..-| . ....+...-+++|..|...+. .+ ...++..|.+++... .+..+.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHH
Confidence 33 33333 34555554444 1 244677788899999988762 12 144778888887766 889999
Q ss_pred HHHHHHHHHhc
Q 004761 669 NAASILLQLCL 679 (732)
Q Consensus 669 ~A~~~L~~L~~ 679 (732)
.++.++..+-.
T Consensus 179 Kvl~li~d~f~ 189 (315)
T 3qml_C 179 KVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99888877663
No 201
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=62.84 E-value=2.1 Score=27.33 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.2
Q ss_pred CCccccccCcccCCCc
Q 004761 237 PPYFRCPLSLELMIDP 252 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dP 252 (732)
|..|.||+|+.-|-||
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 5678899999888776
No 202
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=56.77 E-value=21 Score=33.11 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=56.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|++.++.++..|+..|-.+.+.. ......++...++..|+.++.. .++.+++.++..+..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999999874 3455566666788888888865 57889999988886654
No 203
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.29 E-value=14 Score=33.28 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=54.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
++..|.+.|.++++..+..|+.+|-.+..+. ......+.....+.-|..++...++.+++++..++......-
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 4677888888899999999988887776664 344555555556666777777777899999999888765543
No 204
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=55.28 E-value=26 Score=31.86 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcc------CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYS------EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s------~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|++.++.++..|+..|-.+.+.. ......++...++..|+.++.. .+..+++.++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345788889999999999999999999999874 3456667777888899998863 47899999998887654
No 205
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=54.94 E-value=2.3e+02 Score=34.29 Aligned_cols=214 Identities=14% Similarity=0.092 Sum_probs=120.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccC------chh
Q 004761 489 IPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVL------EEY 561 (732)
Q Consensus 489 I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~------~~~ 561 (732)
+..++..+.+++...+..|-..|..+-.+++ +...+..+|.. .++.+|..|+.+|.+.... ++.
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 4456666666777778888888876655443 33444444544 3688999999999887542 222
Q ss_pred HHHHHhcchHHHHHHhhcC-----CCHHHHHHHHHHHHHhcc--CchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHH
Q 004761 562 KAKIGRSGAVKALVDLLGS-----GTLRGRKDAATALFNLSI--FHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLA 634 (732)
Q Consensus 562 k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~Al~aL~nLs~--~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~ 634 (732)
+..+. ...+..+...-.. .++..+...+.++..+.. .++.- .+.++-++.++..+...++..+.+|.
T Consensus 101 ~~~LR-~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 101 CEGIK-KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTSESLCQNNMVILK 174 (1073)
T ss_dssp HHHHH-HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33322 2344444443322 234555555556665544 22221 23555566655334455677777777
Q ss_pred HHhCC-----h----hh-----HHHHHHc--CcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHH
Q 004761 635 NLSTV-----G----EG-----RLAIARE--GGIPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPL 697 (732)
Q Consensus 635 nLa~~-----~----~~-----r~~i~~~--~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L 697 (732)
.|+.. . .. +..+... ..+..+..++. ..++.....+..+|..+..-=+ ...+++.+.++.|
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L 252 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHH
Confidence 77542 0 01 2233332 01233333443 3567777777888887766322 2457778888887
Q ss_pred -HHchhcCChHHHHHHHHHHHHhhc
Q 004761 698 -VGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 698 -~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
..++ +.+..+..|..+|..+-.
T Consensus 253 ~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 253 IYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CChHHHHHHHHHHHHHHh
Confidence 4666 467888889888776643
No 206
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=54.33 E-value=72 Score=38.53 Aligned_cols=138 Identities=8% Similarity=-0.028 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-----CCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 004761 457 TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-----EAQLTQEHAVTALLNLSIN-DENKAMIAEAGAI 530 (732)
Q Consensus 457 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-----~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l 530 (732)
.++..+..|+.++..++.........-.-...++.|+.+... +.+.++..+++++...+.. ..+...+ ...+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence 567888899999999885432221100011233444443321 1233444577888776532 1122211 2356
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH----------hcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG----------RSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~----------~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
+.|+..|.+.++.++..|+.+|.+++.. .+..+. -...+..+..++..-+.........++..+..
T Consensus 543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6777778777899999999999999863 333332 11344444455555444444555556555543
No 207
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=54.12 E-value=1.9e+02 Score=29.44 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=89.5
Q ss_pred hHHHHHHhhcCC------CHHHHHHHHHHHHHhccCchhHHHHHh--hchHHHHHHhcCCChHHHHHHHHHHHHHhC-Ch
Q 004761 570 AVKALVDLLGSG------TLRGRKDAATALFNLSIFHENKARIIQ--AGAVKHLVDLMDPSTGMVDKAVALLANLST-VG 640 (732)
Q Consensus 570 ~i~~Lv~lL~~~------~~~~~~~Al~aL~nLs~~~~n~~~lv~--~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~-~~ 640 (732)
.+.....+++++ +......|+-.|..+|-.-.-..++++ -..+..|+-.......+.+.|..+++.-.+ +|
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 344555566655 234566777777777766555556665 233444431114466788999999886655 45
Q ss_pred hhHHHHHH--cCcHHHHHHHHhc-------CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC--ChHHH
Q 004761 641 EGRLAIAR--EGGIPSLVEVVES-------GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG--TPRAK 709 (732)
Q Consensus 641 ~~r~~i~~--~~~I~~Lv~lL~~-------~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g--~~~~k 709 (732)
.....+.+ ...+..+..-|.. .+......-+++|-.|........ ...+..|..+...+ .+.+|
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHHH
Confidence 55555554 2345555544432 244556666778888877542221 34678888888877 89999
Q ss_pred HHHHHHHHHhh
Q 004761 710 EKAQQLLSHFR 720 (732)
Q Consensus 710 ~kA~~lL~~l~ 720 (732)
.|+..++..+-
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999776664
No 208
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.96 E-value=18 Score=32.54 Aligned_cols=72 Identities=7% Similarity=0.047 Sum_probs=56.8
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|.+.++.++..|+..|-.+.+... .....++...++..|+.+++..++.++..++..+...+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4457788899999999999999999999887653 33445555567888888887788999999998887654
No 209
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.88 E-value=3 Score=27.96 Aligned_cols=16 Identities=19% Similarity=0.330 Sum_probs=12.2
Q ss_pred CccccccCcccCCCce
Q 004761 238 PYFRCPLSLELMIDPV 253 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV 253 (732)
+.|.||||+.-+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3589999988777663
No 210
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=53.08 E-value=3.6e+02 Score=32.21 Aligned_cols=185 Identities=11% Similarity=0.040 Sum_probs=103.7
Q ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHhcc-Chh----hHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCC
Q 004761 448 KKLIEDLNST---SNEIQASAAAELRLLAKH-NME----NRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 448 ~~Lv~~L~s~---~~~~~~~Al~~L~~La~~-~~~----~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~ 518 (732)
......|... +++++.-|+..|.+..+. +++ .+..+.+ ..+..+...-. .....++.....+|..+....
T Consensus 43 ~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~ 121 (980)
T 3ibv_A 43 KICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQL 121 (980)
T ss_dssp HHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh
Confidence 4455566543 678888888888866651 223 3433332 22333332100 134567777777776665321
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhcc----C-----ch--h-----HHHHHhc---chHHHHHHhh
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSV----L-----EE--Y-----KAKIGRS---GAVKALVDLL 578 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~----~-----~~--~-----k~~i~~~---g~i~~Lv~lL 578 (732)
.. -...+.++.|+.++..++. ......+.+|..++. . ++ . |+.+... .+++....+|
T Consensus 122 ~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL 198 (980)
T 3ibv_A 122 YP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMM 198 (980)
T ss_dssp TT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred Cc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHH
Confidence 00 0134567777777765543 344455555553321 0 00 1 2233221 1234444444
Q ss_pred c----CCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhC
Q 004761 579 G----SGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLST 638 (732)
Q Consensus 579 ~----~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~ 638 (732)
. ..++.....++.+|......-+ -..++..+.++.+..+|. ++.+.+.|+.+|..+..
T Consensus 199 ~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~-~~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 199 LAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQ-IEELRCAACETMTEIVN 260 (980)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTT-SHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcC-ChHHHHHHHHHHHHHHH
Confidence 3 3677888889999887776433 235566788888888883 36788999999888765
No 211
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.69 E-value=23 Score=32.74 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=55.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhc-CChHHHHHHHHHHHHhhcc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQS-GTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~ 722 (732)
++..|.+.|.++++.++..|+.+|-.+..+. .....++.....+.-|+.++.. .++.+++++..++..-...
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4667888888899999999998888877764 4566566666677778888875 3579999998888766554
No 212
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.11 E-value=26 Score=31.88 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=57.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhc------CChHHHHHHHHHHHHhhcc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQS------GTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~------g~~~~k~kA~~lL~~l~~~ 722 (732)
++..|.+.|.++++.++..|+.+|-.+..+. ......+.....+.-|+.++.. .++.+++++..++..-...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5777888889999999999999998888774 4566777777788889988874 2578999988888766544
No 213
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.05 E-value=25 Score=32.77 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=57.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc------CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS------EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s------~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|++.++.++..|+..|-.+.+... ..+..++...++..|+.++.. .+..+++.++.++..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3446788899999999999999999999998754 455667777888899998862 36889999999887654
No 214
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=48.85 E-value=1.1e+02 Score=30.17 Aligned_cols=135 Identities=17% Similarity=0.083 Sum_probs=86.0
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHHHhhc--CCchHH
Q 004761 447 VKKLIEDL-NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLS-LLYSEAQLTQEHAVTALLNLSI--NDENKA 522 (732)
Q Consensus 447 i~~Lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~-lL~s~~~~v~~~A~~~L~nLs~--~~~~k~ 522 (732)
+..+...| .++..+++..|+..|..+ ... ...++.+.. +-..++-.+++.+..++..++. +++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 33455444 456677888888877766 211 123455555 3345678899999999988764 222
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
..++.+...+.+++..+|..|+-.+.--+..... .... -+++.|-.+..+.+.-+++....+|..++..++
T Consensus 139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 1567788889999999998888765321211100 0111 245555566666778889999999999998665
Q ss_pred h
Q 004761 602 N 602 (732)
Q Consensus 602 n 602 (732)
.
T Consensus 211 d 211 (240)
T 3l9t_A 211 D 211 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 215
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=48.46 E-value=1.7e+02 Score=35.92 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=117.2
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--ccCCHHHHHHHHHHHHHhhc------
Q 004761 447 VKKLIEDLNST--SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQEHAVTALLNLSI------ 516 (732)
Q Consensus 447 i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL--~s~~~~v~~~A~~~L~nLs~------ 516 (732)
+..+++.+.++ +.+.+..|-..|..+-+.. .+...+...| .+.+..++.-|..+|.|...
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44555444444 5667888888887765332 2334444333 35578899999999988642
Q ss_pred CCchHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 517 NDENKAMIAEAGAIEPLIHVLKS---GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 517 ~~~~k~~i~~~g~l~~Lv~lL~~---~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
.++.+..+. ...+..+...-.. ....++...+.++..++..+-.. .....++.|+.++.. ++..+..++.+|
T Consensus 83 ~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 83 SRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp CHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 222333332 2234333322111 34567777777777766432110 124788999998876 556677888888
Q ss_pred HHhccC-------chhHHH-----HHhh--chHHHHHHhc-CC-------------------ChHHHHHHHHHHHHHhCC
Q 004761 594 FNLSIF-------HENKAR-----IIQA--GAVKHLVDLM-DP-------------------STGMVDKAVALLANLSTV 639 (732)
Q Consensus 594 ~nLs~~-------~~n~~~-----lv~~--G~V~~Ll~lL-~~-------------------~~~l~e~al~iL~nLa~~ 639 (732)
..|+.. ...+.. +.+. .+++.+..++ .. +..+...++.++.+....
T Consensus 158 ~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 158 LRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 888542 112221 1111 2223333333 10 122444555555554443
Q ss_pred hhhHHHHHHcC--cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 640 GEGRLAIAREG--GIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 640 ~~~r~~i~~~~--~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
-.. ..+.+.. .++.+..++. ++..+..|+.+|..++...
T Consensus 238 i~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 238 VSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp SCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred cCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 222 2223332 4555665554 4677899999999998743
No 216
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=46.71 E-value=4.3e+02 Score=31.83 Aligned_cols=241 Identities=14% Similarity=0.079 Sum_probs=122.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHH----HHhcC---CHHHHHHhhccCCHHHHHHHHHHHHHhhc-CC
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMI----IGNCG---AIPPLLSLLYSEAQLTQEHAVTALLNLSI-ND 518 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----i~~~G---~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~ 518 (732)
.-.|++.|+.-+.+........+. .....|.. +...| ++..+..++.+......+ |+.+|..+.. -.
T Consensus 313 f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~ 387 (1056)
T 1lsh_A 313 FLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQ 387 (1056)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCC
Confidence 345677777666554443333332 12333333 33345 344555666555433333 3333322211 11
Q ss_pred chHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHhc----cCchhHHHHHhcchHHH----HHHhhcCCCHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKS----GNGGAKENSAAALFSLS----VLEEYKAKIGRSGAVKA----LVDLLGSGTLRGR 586 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls----~~~~~k~~i~~~g~i~~----Lv~lL~~~~~~~~ 586 (732)
.... .+..+..+++. .++.++..+.-++.+|. .....+ ....++. |.+.+..++..-+
T Consensus 388 Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~ 457 (1056)
T 1lsh_A 388 ATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEI 457 (1056)
T ss_dssp CCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHH
T ss_pred CCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHH
Confidence 2222 34445555654 34555555555555553 221110 1122344 4444556777788
Q ss_pred HHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-C-----C--ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHH
Q 004761 587 KDAATALFNLSIFHENKARIIQAGAVKHLVDLM-D-----P--STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEV 658 (732)
Q Consensus 587 ~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~-----~--~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~l 658 (732)
..+++||.|+-.. ..++.|..++ . . ...+...|+.+|..++..... ..-+.+.++
T Consensus 458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i 520 (1056)
T 1lsh_A 458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPI 520 (1056)
T ss_dssp HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHH
T ss_pred HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHH
Confidence 8999999998652 3567777776 2 1 235667788888887643210 123455666
Q ss_pred Hh--cCCHHHHHHHHHHHHHHhcCChHhHHHHHh----CC-------CHHHHHHchhcCChH---HHHHHHHHHHHhh
Q 004761 659 VE--SGSQRGKENAASILLQLCLHSPKFCTLVLQ----EG-------AVPPLVGLSQSGTPR---AKEKAQQLLSHFR 720 (732)
Q Consensus 659 L~--~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~----~G-------~i~~L~~Ll~~g~~~---~k~kA~~lL~~l~ 720 (732)
.. ...++.|-.|+.+|...+- +......+.+ +. +...|-.+.++..|. .+.+|..+++++.
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm~t~P-~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~~a~~~l~ 597 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFFESKP-SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKMLG 597 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHHHTCC-CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHHHHHTTSC
T ss_pred hcCCCCChHHHHHHHHHHHHHCc-CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc
Confidence 63 3567788777777764222 2232222221 11 244566677776653 4455666666653
No 217
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=46.15 E-value=2.5e+02 Score=33.92 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=86.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-------CCHHHHHHHHHHHHHhhcCC
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-------EAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-------~~~~v~~~A~~~L~nLs~~~ 518 (732)
....+.+.+...+.+.+.-+++.|.|+... ..++.|..++.. ....++..|+++|.+++...
T Consensus 441 i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 441 LHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD 509 (1056)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence 345566667777888888899999998732 357777777742 24678889999999887532
Q ss_pred chHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLK--SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFN 595 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~n 595 (732)
..+ +-+.+..+.. ..+.++|..|..+|..-.-. ...+..+...+.. .+.++.......|.+
T Consensus 510 p~~-------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~---------~~~l~~ia~~l~~E~~~QV~sfv~S~l~s 573 (1056)
T 1lsh_A 510 PRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPS---------VALVSMVAVRLRREPNLQVASFVYSQMRS 573 (1056)
T ss_dssp HHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC---------HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHH-------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC---------HHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 111 2334566663 45689998888887643221 1245666666665 568888888889999
Q ss_pred hccCc
Q 004761 596 LSIFH 600 (732)
Q Consensus 596 Ls~~~ 600 (732)
++...
T Consensus 574 la~s~ 578 (1056)
T 1lsh_A 574 LSRSS 578 (1056)
T ss_dssp HTTCC
T ss_pred HHhcC
Confidence 98754
No 218
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=45.97 E-value=32 Score=31.26 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=56.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhc------CChHHHHHHHHHHHHhhccc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQS------GTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~------g~~~~k~kA~~lL~~l~~~~ 723 (732)
++..|.+.|.+.++.++..|+.+|-.+..+.+ .+...+.....+.-|+.++.. .++.+|+++..++..-...-
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 56788888889999999999999888877644 455666666677788888863 35789999988887765543
No 219
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.09 E-value=26 Score=34.25 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=55.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhccc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~~ 723 (732)
++..|.+.|.+.++.++..|+.+|-.+..+. .....++.....+..|..++...+ +.+|+++..++......-
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4677888888999999999999888887763 345566666666677777776544 689999999888776543
No 220
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=44.98 E-value=51 Score=29.61 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=50.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhC-CCHHHHHHchh-----cCC---hHHHHHHHHHHHHhh
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQE-GAVPPLVGLSQ-----SGT---PRAKEKAQQLLSHFR 720 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~-G~i~~L~~Ll~-----~g~---~~~k~kA~~lL~~l~ 720 (732)
.+..|.+-|...++..+..|+.+|-.||.++ +.++..+.+. ..|..|...-- .|+ ..+|.+|.+++.+|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 3566777778888999999999999999864 4555555543 22333332221 122 468999999999997
Q ss_pred ccccC
Q 004761 721 NQREG 725 (732)
Q Consensus 721 ~~~~~ 725 (732)
.....
T Consensus 130 d~~~~ 134 (140)
T 1vdy_A 130 SEENG 134 (140)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 76543
No 221
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=44.67 E-value=93 Score=29.70 Aligned_cols=28 Identities=18% Similarity=0.435 Sum_probs=18.7
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
...+.|++|+.++. | .....||+|+.+-
T Consensus 169 ~~~~~C~~CG~i~~-------g-------------~~p~~CP~C~~~k 196 (202)
T 1yuz_A 169 DKFHLCPICGYIHK-------G-------------EDFEKCPICFRPK 196 (202)
T ss_dssp CCEEECSSSCCEEE-------S-------------SCCSBCTTTCCBG
T ss_pred CcEEEECCCCCEEc-------C-------------cCCCCCCCCCCCh
Confidence 45788888777653 1 0125899999763
No 222
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=43.53 E-value=28 Score=32.44 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=56.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhc------CChHHHHHHHHHHHHhhcc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQS------GTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~------g~~~~k~kA~~lL~~l~~~ 722 (732)
++..|.+.|.++++.++..|+.+|-.+..+.+ ....++.....+.-|+.++.. .++.+|+|+..++..-...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999988888754 455567677778888888863 2478999998888766543
No 223
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=43.06 E-value=3e+02 Score=28.43 Aligned_cols=239 Identities=13% Similarity=0.095 Sum_probs=162.8
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc-h----HHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhc
Q 004761 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE-N----KAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLS 556 (732)
Q Consensus 483 i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~-~----k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls 556 (732)
+...+.+..|+..|..=+.+.+..+..+..++-.... + ...+.. -.+.|..++.. +++++..++-..|....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 3445888899999988899999999999988865432 2 223332 22222233322 14667777778888888
Q ss_pred cCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhh---chHHHHHHhc-CCChHHHHHHHH
Q 004761 557 VLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQA---GAVKHLVDLM-DPSTGMVDKAVA 631 (732)
Q Consensus 557 ~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~---G~V~~Ll~lL-~~~~~l~e~al~ 631 (732)
.++.....+...+.+..+.+++..++=++..+|..++..|-..+ .....++.. ..+...-.+| +++--++..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 87777777777777888999999999999999999999886543 333444442 3556666767 666677889999
Q ss_pred HHHHHhCChhhHHHHHH----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---ChHhHHHHHh--CCCHHHHHHchh
Q 004761 632 LLANLSTVGEGRLAIAR----EGGIPSLVEVVESGSQRGKENAASILLQLCLH---SPKFCTLVLQ--EGAVPPLVGLSQ 702 (732)
Q Consensus 632 iL~nLa~~~~~r~~i~~----~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~---~~~~~~~v~~--~G~i~~L~~Ll~ 702 (732)
+|+.|...+.+-..+.. ..-+..++.+|++.+...+-.|..+.--+..+ .+.....+.. ...+.-|-.+..
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~ 311 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQN 311 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999887777666654 22488889999999999999999998887774 2334444443 345555555555
Q ss_pred cC--ChHHHHHHHHHHHHhhccc
Q 004761 703 SG--TPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 703 ~g--~~~~k~kA~~lL~~l~~~~ 723 (732)
+. ++.-...=.-+++.+.+..
T Consensus 312 d~~eDeqF~dEK~~lI~~I~~L~ 334 (341)
T 1upk_A 312 DRTEDEQFNDEKTYLVKQIRDLK 334 (341)
T ss_dssp TC-CCSHHHHHHHHHHHHHHTCC
T ss_pred CCcchhhHHHHHHHHHHHHHhCC
Confidence 43 3333333334666666654
No 224
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=42.37 E-value=2.6e+02 Score=27.59 Aligned_cols=145 Identities=13% Similarity=0.046 Sum_probs=87.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
.+.|-.|+...+....+.+...++..+.++-+... . +. ..+++.++.+-...+.+++.-.+..|...+.... .
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp--~-ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---~ 86 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCA--E-LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---E 86 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTG--G-GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---G
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCH--h-HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---H
Confidence 44455666666654557888999999997765321 1 11 2466677777667788899888888877763211 1
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh--------ccCch---hHHHHHh--cchHHHHHHhhcCCCHHHHHHHH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSL--------SVLEE---YKAKIGR--SGAVKALVDLLGSGTLRGRKDAA 590 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~L--------s~~~~---~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Al 590 (732)
.....++.|..+|++.++.+...+..+..++ +.++. ....... ...=..++.++.+++..++..|+
T Consensus 87 -l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~i 165 (257)
T 3gs3_A 87 -LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAI 165 (257)
T ss_dssp -GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence 1223577777888877777776665554433 22221 1111111 13334556667777777777777
Q ss_pred HHHHHh
Q 004761 591 TALFNL 596 (732)
Q Consensus 591 ~aL~nL 596 (732)
+.+..+
T Consensus 166 KF~e~v 171 (257)
T 3gs3_A 166 KFLEGV 171 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 225
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.93 E-value=39 Score=30.69 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=57.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcc------CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYS------EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s------~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|.+.++.++..|+..|-.+.+.... ....++...++.-|+.++.. .+..+++.++.++..-+
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 44578888999999999999999999999876543 35556666788889988863 57889999998887764
No 226
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=40.49 E-value=2.2e+02 Score=26.17 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=85.9
Q ss_pred HHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhcch--HHHHHHHHHHHHHHH
Q 004761 35 KTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSE--PLMMKIQSSSLEICH 112 (732)
Q Consensus 35 ~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~~Sklyll~~~~--~i~~~f~~~~~~i~~ 112 (732)
+...++..+|..-++||...+ + .|.--..|+.-+..|..+..+.+.+.. .|-++.++ .+...+..+...+..
T Consensus 8 ~e~~~~~d~L~~ql~El~~~~-l-~~gE~eeLe~e~~rL~nae~l~~~~~~----a~~~L~~~e~~~~~~L~~a~~~L~~ 81 (175)
T 4abx_A 8 RERARQIDLLAFQVQEISEVS-P-DPGEEEGLNTELSRLSNLHTIAQAAAG----GVELLSDGDLNAAGLIGEAVRALNA 81 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-C-CCChHHHHHHHHHHHHCHHHHHHHHHH----HHHHHhCCcchHHHHHHHHHHHHHH
Confidence 456788999999999998876 2 234456778888888888888887744 34444432 677777777777666
Q ss_pred HHHhhcccCCCCChhhHHHHHHHHHhhhHH--HHHHHHHHHHHHccCCCCcCchHHHH----------HHHHHcCCCCHH
Q 004761 113 ILYRLLQSSPSNSSMSAVQHCMQEIHCLKQ--ERIMEHITKAMRGLQDDTIRCTDHLV----------KIIESLGLTSNQ 180 (732)
Q Consensus 113 ~L~~lp~~~~~~s~e~~~~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~----------~i~~~~~l~~~~ 180 (732)
.-.. + . .+..+.+.+..+.. +++...+...+ ++..++++.|. .+.+|.| .++.
T Consensus 82 l~~~------d--~--~l~~~~e~l~~a~~~l~d~~~~L~~y~----~~le~DP~rL~~ie~RL~~l~~L~RKyg-~~~e 146 (175)
T 4abx_A 82 GAKY------D--E--TVMQLQNELRAALESVQAIAGELRDVA----EGSAADPEALDRVEARLSALSKLKNKYG-PTLE 146 (175)
T ss_dssp HHTT------C--H--HHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCCCCHHHHHHHHHHHHHHHHHHHHHC-SSHH
T ss_pred HHHh------C--h--hHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHH
Confidence 4211 1 1 23344444444333 45555555443 33456666554 4555666 5677
Q ss_pred HHHHHHHHHHHHHHH
Q 004761 181 ELLKESLAVEMERIR 195 (732)
Q Consensus 181 ~~~~e~~~l~~~~~~ 195 (732)
++..-...+++++..
T Consensus 147 ell~~~~~~~~eL~~ 161 (175)
T 4abx_A 147 DVVEFGAQAAEELAG 161 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555555555543
No 227
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=38.96 E-value=9.4 Score=27.42 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=11.4
Q ss_pred CCCCccccccCcc
Q 004761 235 PIPPYFRCPLSLE 247 (732)
Q Consensus 235 ~~p~~f~Cpi~~~ 247 (732)
.+|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 4899999999985
No 228
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=37.24 E-value=17 Score=36.02 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=12.2
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q 004761 532 PLIHVLKSGNGGAKENSAAA 551 (732)
Q Consensus 532 ~Lv~lL~~~~~e~~~~Aa~~ 551 (732)
.+..++++.+.+++..++..
T Consensus 174 ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 34455566667777766654
No 229
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=33.98 E-value=4.4e+02 Score=27.71 Aligned_cols=186 Identities=13% Similarity=0.103 Sum_probs=110.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKH-NMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+.|-.|+........+.+...++.++.+.-+ ++. .-.++++.++.+-...+.+++.-.+..|...+... ..
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~e 96 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IE 96 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GG
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HH
Confidence 3444455444332235788889999887643 332 22478999999988889999998888887766421 11
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh---c-----cCchh---HHHHHh--cchHHHHHHhhcCCCHHHHHHHH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSL---S-----VLEEY---KAKIGR--SGAVKALVDLLGSGTLRGRKDAA 590 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~L---s-----~~~~~---k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Al 590 (732)
++ ...++.|..+|.+.++.+...+..+..++ + ..+.. ...... ..+-..++.++.+++..++..|+
T Consensus 97 l~-~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 97 LL-LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 11 23577778888877777666555444333 1 11111 111111 13445667778888899999998
Q ss_pred HHHHHhc--cCc---h-----------------------hHHHHHh--hchHHHHHHhc-C--CChHHHHHHHHHHHHHh
Q 004761 591 TALFNLS--IFH---E-----------------------NKARIIQ--AGAVKHLVDLM-D--PSTGMVDKAVALLANLS 637 (732)
Q Consensus 591 ~aL~nLs--~~~---~-----------------------n~~~lv~--~G~V~~Ll~lL-~--~~~~l~e~al~iL~nLa 637 (732)
+.+..+- ..+ + +...+-+ .|.+..|+.++ . .+......++..|++|+
T Consensus 176 KFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Ia 255 (386)
T 3o2t_A 176 KFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIA 255 (386)
T ss_dssp HHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 8777643 110 0 1122222 46777888887 2 23445556777777776
Q ss_pred CC
Q 004761 638 TV 639 (732)
Q Consensus 638 ~~ 639 (732)
..
T Consensus 256 k~ 257 (386)
T 3o2t_A 256 RQ 257 (386)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 230
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=33.96 E-value=12 Score=27.77 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=11.6
Q ss_pred CCCCccccccCcc
Q 004761 235 PIPPYFRCPLSLE 247 (732)
Q Consensus 235 ~~p~~f~Cpi~~~ 247 (732)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999985
No 231
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=33.88 E-value=14 Score=27.22 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=12.0
Q ss_pred CCCCCccccccCcc
Q 004761 234 VPIPPYFRCPLSLE 247 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~ 247 (732)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 35899999999986
No 232
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.24 E-value=3.5 Score=34.41 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=26.0
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
+..||.|...|. + ..|+.+|-.|=+.+... ..||.|+++|.
T Consensus 32 ~~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~~--a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLD-Q---DNGHARCRSCGEFIEMK--ALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEE-E---ETTEEEETTTCCEEEEE--EECTTTCSBCE
T ss_pred cccCccCCCcce-e---cCCEEECccccchhhcc--ccCcchhhHHH
Confidence 368999998764 2 24444476663322222 47999999884
No 233
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=32.44 E-value=3.8e+02 Score=32.78 Aligned_cols=178 Identities=11% Similarity=0.041 Sum_probs=98.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcc-----ChhhHHHHHhcCCHHHHHHhhcc---CCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 455 NSTSNEIQASAAAELRLLAKH-----NMENRMIIGNCGAIPPLLSLLYS---EAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 455 ~s~~~~~~~~Al~~L~~La~~-----~~~~r~~i~~~G~I~~Lv~lL~s---~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
.+.+..++..|+..|++..+. +++.|..|.+ ..+..+...-.. ....++.....++..++..+-.. -.
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HW 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cc
Confidence 355788888899888887643 4455555553 223333322111 35677777777777775431110 13
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-------chhHH-----HHHhc--chHHHHHHhhcC------------
Q 004761 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-------EEYKA-----KIGRS--GAVKALVDLLGS------------ 580 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-------~~~k~-----~i~~~--g~i~~Lv~lL~~------------ 580 (732)
.+.++.|+.+++. +...++.+..+|..|+.. ...+. .+... .+++.+..++..
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5678888888866 455677788888777531 11111 12221 334444445532
Q ss_pred -------CCHHHHHHHHHHHHHhccCchhHHHHHhh--chHHHHHHhcCCChHHHHHHHHHHHHHhCC
Q 004761 581 -------GTLRGRKDAATALFNLSIFHENKARIIQA--GAVKHLVDLMDPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 581 -------~~~~~~~~Al~aL~nLs~~~~n~~~lv~~--G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~ 639 (732)
.+......++.++.+....-+. ..+++. ..++.+..++. +..+...|+.+|..++..
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~-~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN-EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG-CTTTHHHHHHHHHHHHTC
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC-CHHHHHHHHHHHHHHHhC
Confidence 1233556677777655443222 122232 26666666662 345677888888888763
No 234
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=32.42 E-value=19 Score=27.55 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=28.2
Q ss_pred hhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004761 44 LKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWS 84 (732)
Q Consensus 44 L~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~ 84 (732)
|..++||+...-.|--.....+.+-|..-+..|+.|+..|.
T Consensus 16 LL~VIeEmgkdIrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 16 LLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHTTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 44567887521101112346688999999999999999995
No 235
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.19 E-value=58 Score=31.49 Aligned_cols=73 Identities=8% Similarity=0.091 Sum_probs=55.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhccc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~~~ 723 (732)
++..|.+.|.++++.++..|+.+|-.+..+.+. ...++.....+..|..++.+. ++.+++++.+++..-...-
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 466777888889999999999999988887544 555666656777778877654 4789999888887765443
No 236
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=31.99 E-value=23 Score=29.81 Aligned_cols=81 Identities=9% Similarity=0.092 Sum_probs=57.2
Q ss_pred cccchHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHH-HHHHHHHHHHHHHHhhCCCcchhHHHhcchHHHHHHH
Q 004761 26 KLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECE-ELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQ 104 (732)
Q Consensus 26 ~~~~~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~-~L~~al~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~ 104 (732)
.....+++=..+++++.-+.++|+.|...+ -+.+.- .... .-...-++|+.|+.....+ |+.....|.
T Consensus 11 ~~~~L~~~R~~LV~~l~~V~~lLD~LL~~~-VL~~ee-~~I~~~~~T~~~kaR~Lld~v~~K---------G~~A~~~F~ 79 (98)
T 2nz7_A 11 HIQLLKSNRELLVTHIRNTQCLVDNLLKND-YFSAED-AEIVCACPTQPDKVRKILDLVQSK---------GEEVSEFFL 79 (98)
T ss_dssp HHHHHHHTHHHHHHHCCCCHHHHHHHHHTT-SSCHHH-HHHHHTCCSHHHHHHHHHHHHHHH---------CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHcC-CCCHHH-HHHHccCCCcHHHHHHHHHHHHHH---------hHHHHHHHH
Confidence 334457777779999999999999999776 344433 3332 2355678999999866443 677778888
Q ss_pred HHHHHHHHHHHhh
Q 004761 105 SSSLEICHILYRL 117 (732)
Q Consensus 105 ~~~~~i~~~L~~l 117 (732)
....+..++|-.+
T Consensus 80 ~~L~e~~~~~~~~ 92 (98)
T 2nz7_A 80 YLLQQLADAYVDL 92 (98)
T ss_dssp HHHHHHHHSSGGG
T ss_pred HHHHHhCccchhh
Confidence 8888888776443
No 237
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.19 E-value=11 Score=32.29 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 004761 274 LNICPKTRQTLAH 286 (732)
Q Consensus 274 ~~~cP~~~~~l~~ 286 (732)
+..||+||+++.+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3579999999863
No 238
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.05 E-value=46 Score=32.48 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=56.1
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|.+.++.++..|+..|-.+.+.... ....++...++..|+.++.. .+..+++.++.+|...+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44578889999999999999999999999876433 45555566777778887754 57889999998887764
No 239
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.78 E-value=1.3e+02 Score=32.32 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHHHhhcCCchHHHHH-HcCCHHHHHHHHcC
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLS-LLYSEAQLTQEHAVTALLNLSINDENKAMIA-EAGAIEPLIHVLKS 539 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~-~~g~l~~Lv~lL~~ 539 (732)
+..++..+|.+..+.+.+ +.+..++. .+.+..+..+-.++++|.|+-.++.....++ .......+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 556777888777654322 22332332 2334567888899999999988877434344 32234556655432
Q ss_pred C--------CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc---------CCCHHHHHHHHHHHHHhccCc
Q 004761 540 G--------NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG---------SGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 540 ~--------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---------~~~~~~~~~Al~aL~nLs~~~ 600 (732)
. +..++..++.+++|++...... . .....+..+++++. ..+.++..-++.||.+|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~-~-~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKG-N-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS-C-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcc-c-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 2457778888889988632110 0 01234455666655 247788889999999998643
No 240
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=29.50 E-value=18 Score=29.36 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.6
Q ss_pred CCCCCccccccCccc
Q 004761 234 VPIPPYFRCPLSLEL 248 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~l 248 (732)
.++|+++.||+|..-
T Consensus 55 edlPddW~CPvCga~ 69 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAA 69 (81)
T ss_dssp TTSCTTCCCTTTCCC
T ss_pred hHCCCCCcCCCCCCC
Confidence 358999999999863
No 241
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=29.47 E-value=16 Score=26.87 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=11.6
Q ss_pred CCCCccccccCcc
Q 004761 235 PIPPYFRCPLSLE 247 (732)
Q Consensus 235 ~~p~~f~Cpi~~~ 247 (732)
.+|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 242
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=29.33 E-value=46 Score=33.09 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHHHhhcCCc-hHHHHHHcCCHHHHHHHHcC
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLS-LLYSEAQLTQEHAVTALLNLSINDE-NKAMIAEAGAIEPLIHVLKS 539 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~~-~k~~i~~~g~l~~Lv~lL~~ 539 (732)
+..++..+|.+..+.+.+ +.+..++. .+.+.++..+--+++++.|+-.++. .+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 556777888777654322 23333322 2334567888999999999988877 66666543334445544322
Q ss_pred --------CCHHHHHHHHHHHHHhccCchh-HHHHHhcchHHHHHHhhcC---------CCHHHHHHHHHHHHHhccCc
Q 004761 540 --------GNGGAKENSAAALFSLSVLEEY-KAKIGRSGAVKALVDLLGS---------GTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 540 --------~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~---------~~~~~~~~Al~aL~nLs~~~ 600 (732)
.+..++..++..++|++..... +. .......+++++.. .+.++..-++.||.+|...+
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 1345777888888998863211 00 12334455555542 26678888888888887533
No 243
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=28.57 E-value=17 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=11.5
Q ss_pred CCCCccccccCcc
Q 004761 235 PIPPYFRCPLSLE 247 (732)
Q Consensus 235 ~~p~~f~Cpi~~~ 247 (732)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4899999999986
No 244
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.98 E-value=64 Score=31.20 Aligned_cols=72 Identities=10% Similarity=0.003 Sum_probs=55.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|.+.++.++..|+..|-.+.+.... .+..++...++..|+.++.. .+..+++.++..+..-+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 44577888999999999999999999999987543 45566666788888888764 46888888888776654
No 245
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=27.07 E-value=34 Score=29.68 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=37.9
Q ss_pred CCccccccCcccCCC-ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMID-PVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~d-PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
|+-|.|..|...+.+ +.....|..||+.+..+-+ .+.|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 567999999988876 6677899999999876543 3689999998764
No 246
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=26.21 E-value=20 Score=28.21 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=12.1
Q ss_pred CCCCccccccCccc
Q 004761 235 PIPPYFRCPLSLEL 248 (732)
Q Consensus 235 ~~p~~f~Cpi~~~l 248 (732)
.+|+++.||+|..-
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 48999999999874
No 247
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.92 E-value=36 Score=29.52 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=40.3
Q ss_pred CCccccccCcccCCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNL 289 (732)
Q Consensus 237 p~~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 289 (732)
|+-|.|..|...+.| +.....|..||+.+..+-|... ..|-.|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~-~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC-CSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC-CccccCCCCcCchhe
Confidence 456999999999974 5667899999999988877431 279999988876444
No 248
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=25.26 E-value=1.2e+02 Score=27.46 Aligned_cols=72 Identities=6% Similarity=0.100 Sum_probs=54.2
Q ss_pred CchHHHHHHHhc-CCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHH-HHHhhcc---CCHHHHHHHHHHHHHhh
Q 004761 444 TPYVKKLIEDLN-STSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPP-LLSLLYS---EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~-Lv~lL~s---~~~~v~~~A~~~L~nLs 515 (732)
...+..|.+.|+ ..++.++..|+..|-.+.+.. ......++...++.- |+.++.. .+..+++.++..+..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 445678889997 488999999999999999875 445556666678887 7887742 34688888888886654
No 249
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.15 E-value=69 Score=33.62 Aligned_cols=129 Identities=14% Similarity=0.104 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc-CCHHHHHHHHc-
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLS-LLYSEAQLTQEHAVTALLNLSINDENKAMIAEA-GAIEPLIHVLK- 538 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~-g~l~~Lv~lL~- 538 (732)
+..++..+|.+..+.+.. +.+..++. .+.+..+..+-.++++|.|+-.++.....++.. .....+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 556777888777654321 33333332 233456788889999999998887743434322 12334444432
Q ss_pred ---CC----CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc---------CCCHHHHHHHHHHHHHhccC
Q 004761 539 ---SG----NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG---------SGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 539 ---~~----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---------~~~~~~~~~Al~aL~nLs~~ 599 (732)
.. +..++..++.+++|++..... .. .....+..+++++. ..+.++..-++.||.+|...
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~-~~-~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTK-GN-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHH-TC-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhc-cc-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 11 345777888888998863211 00 01234456666665 24788889999999999863
No 250
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.09 E-value=49 Score=28.81 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=39.1
Q ss_pred CCccccccCcccCC---CceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMI---DPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
|+-|.|..|...+. .+.....|..||+.+..+-+... ..|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~-~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD-GLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC-EECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc-cChhhcCCccCc
Confidence 67899999999985 37778899999999987766321 279999988754
No 251
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=23.85 E-value=24 Score=29.01 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=11.7
Q ss_pred CCCCccccccCcc
Q 004761 235 PIPPYFRCPLSLE 247 (732)
Q Consensus 235 ~~p~~f~Cpi~~~ 247 (732)
.+|+++.||+|+.
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999986
No 252
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=23.34 E-value=96 Score=26.44 Aligned_cols=77 Identities=9% Similarity=0.039 Sum_probs=54.1
Q ss_pred ccchHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhcchHHHHHHHHH
Q 004761 27 LKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSS 106 (732)
Q Consensus 27 ~~~~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~ 106 (732)
..+++++-..|+.++.-+.+++++|.. + -+++........-...-++++.|+..-..+ |......|..+
T Consensus 19 ~~fv~~hR~~Li~rv~~V~~ILD~Ll~-~-VLteee~e~I~ae~T~q~k~R~Lld~v~~k---------G~~A~~~F~~~ 87 (107)
T 3kat_A 19 LHFVDQYREQLIARVTSVEVVLDKLHG-Q-VLSQEQYERVLAENTRPSQMRKLFSLSQSW---------DRKCKDGLYQA 87 (107)
T ss_dssp CHHHHHTHHHHHTTCCCHHHHHHHHTT-T-TSCHHHHHHHHHCCSHHHHHHHHHHGGGGC---------CTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHH-h-hCCHHHHHHHHhCCCCHHHHHHHHHHhhcC---------CHHHHHHHHHH
Confidence 456699999999999999999999986 4 677766666665566678888888754332 34445555555
Q ss_pred HHHHHHHH
Q 004761 107 SLEICHIL 114 (732)
Q Consensus 107 ~~~i~~~L 114 (732)
..+....|
T Consensus 88 L~e~dp~L 95 (107)
T 3kat_A 88 LKETHPHL 95 (107)
T ss_dssp HHHHCHHH
T ss_pred HHHcCHHH
Confidence 55544443
No 253
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.06 E-value=17 Score=33.52 Aligned_cols=10 Identities=20% Similarity=0.790 Sum_probs=8.3
Q ss_pred CCCCCCCCCC
Q 004761 275 NICPKTRQTL 284 (732)
Q Consensus 275 ~~cP~~~~~l 284 (732)
..||.||.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 5899999875
No 254
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=23.04 E-value=6.3e+02 Score=26.50 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=92.6
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhh--------
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS-------- 515 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs-------- 515 (732)
..+++.++++-...+.++++..+..|...++...+.- .-.++.|..+|.+.++.+...++.+..++-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678889998888899999999999998887654442 235667888888888988877777666552
Q ss_pred cCCch-----HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc--Cc---h-----------------------hH
Q 004761 516 INDEN-----KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV--LE---E-----------------------YK 562 (732)
Q Consensus 516 ~~~~~-----k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~---~-----------------------~k 562 (732)
.++.. ...-.-...-..++.++.+++..+|..++..+..+-. .. + +.
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~ 216 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQY 216 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCH
Confidence 12211 0000001122345566777888888888877655421 10 0 11
Q ss_pred HHHH-h-cchHHHHHHhhcCC--CHHHHHHHHHHHHHhccC
Q 004761 563 AKIG-R-SGAVKALVDLLGSG--TLRGRKDAATALFNLSIF 599 (732)
Q Consensus 563 ~~i~-~-~g~i~~Lv~lL~~~--~~~~~~~Al~aL~nLs~~ 599 (732)
..+. + .+.+..|+.++... ++.....++.+|.+|+..
T Consensus 217 ~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~ 257 (386)
T 3o2t_A 217 NVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ 257 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh
Confidence 2222 2 26778888888753 344445556666666553
No 255
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=22.72 E-value=36 Score=26.30 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=26.6
Q ss_pred hhHHHHHhh-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004761 45 KPLLDEVVD-YKIPLDEVLNKECEELDMVVNEAREFMENWS 84 (732)
Q Consensus 45 ~~lleEl~~-~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~ 84 (732)
..++||+.. .+ |---....+.+-|..-+..|+.|+..|-
T Consensus 21 L~vIeEmgkdir-PTyagsks~~ERLkRgI~hAr~LVRECl 60 (69)
T 2m1l_A 21 LSVIEEMGKEIR-PTYAGSKSAMERLKRGIIHARALVRECL 60 (69)
T ss_dssp HHHHHHHHTTHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccc-chhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 345677642 21 1111235688999999999999999995
No 256
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.49 E-value=1.5e+02 Score=29.35 Aligned_cols=101 Identities=10% Similarity=0.056 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHhccCch-hHHHHHhhchHHHHHHhc-----C----CChHHHHHHHHHHHHHhCChhh-HHHHHH
Q 004761 580 SGTLRGRKDAATALFNLSIFHE-NKARIIQAGAVKHLVDLM-----D----PSTGMVDKAVALLANLSTVGEG-RLAIAR 648 (732)
Q Consensus 580 ~~~~~~~~~Al~aL~nLs~~~~-n~~~lv~~G~V~~Ll~lL-----~----~~~~l~e~al~iL~nLa~~~~~-r~~i~~ 648 (732)
..++..+..+++++.|+-.++. .+..+........+++.+ + .+.+++-.+..++.|++..--. +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467788899999999999888 666665544445555544 1 1345666677778888652110 00 1
Q ss_pred cCcHHHHHHHHhc---------CCHHHHHHHHHHHHHHhcCChH
Q 004761 649 EGGIPSLVEVVES---------GSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 649 ~~~I~~Lv~lL~~---------~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
......+++.+.. .++++...++.+|.+|...++.
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 2234455555542 2667777788888888764443
No 257
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.24 E-value=1.1e+02 Score=27.93 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHH-HHHchhc-C--ChHHHHHHHHHHHHhhcc
Q 004761 651 GIPSLVEVVE-SGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPP-LVGLSQS-G--TPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 651 ~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~-L~~Ll~~-g--~~~~k~kA~~lL~~l~~~ 722 (732)
++..|.+.|. ++++.++..|+.+|-.+..+. ......+.....+.- |+.++.. + ...+|+++..++..-...
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4667888887 478999999999988887764 456666766667776 7777742 2 248999988888776554
No 258
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=21.81 E-value=50 Score=27.40 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=36.0
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
.+.|--|-.-.+ =.|..+.|-+|+.|+..-+..+ ..||.|+.+|..+
T Consensus 28 ~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~S-drCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSVS-NRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSSS-SEETTTTEECCCC
T ss_pred cccChhhccccC-CeeeecchhhHHHHHHHHHhhc-cCCcccCCcCCcc
Confidence 567888876544 3455678999999998877655 6899999998654
No 259
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.09 E-value=34 Score=28.59 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=11.3
Q ss_pred ccchHHHHHHHhc
Q 004761 260 TYERVFIQKWLDH 272 (732)
Q Consensus 260 ty~r~~I~~~~~~ 272 (732)
-|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999999974
No 260
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.57 E-value=25 Score=33.39 Aligned_cols=10 Identities=20% Similarity=0.683 Sum_probs=8.0
Q ss_pred CCCCCCCCCC
Q 004761 275 NICPKTRQTL 284 (732)
Q Consensus 275 ~~cP~~~~~l 284 (732)
..||+|+.+-
T Consensus 172 ~~CP~C~~~k 181 (191)
T 1lko_A 172 ELCPACAHPK 181 (191)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCcCCH
Confidence 4899999863
Done!