Query 004763
Match_columns 732
No_of_seqs 379 out of 2591
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 12:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2198 tRNA cytosine-5-methyl 100.0 3.2E-68 6.9E-73 566.6 19.4 283 1-300 78-362 (375)
2 PRK11933 yebU rRNA (cytosine-C 100.0 2E-52 4.3E-57 468.7 31.8 379 16-645 59-442 (470)
3 COG0144 Sun tRNA and rRNA cyto 100.0 1.4E-52 2.9E-57 457.1 21.8 182 56-263 134-315 (355)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 2.2E-49 4.7E-54 419.9 14.1 181 56-264 63-247 (283)
5 KOG1122 tRNA and rRNA cytosine 100.0 3E-47 6.6E-52 409.2 13.3 193 43-268 211-403 (460)
6 TIGR00446 nop2p NOL1/NOP2/sun 100.0 8.9E-45 1.9E-49 381.0 20.2 172 56-256 49-220 (264)
7 PRK14903 16S rRNA methyltransf 100.0 1.2E-41 2.5E-46 380.1 22.4 179 56-263 215-393 (431)
8 PRK14901 16S rRNA methyltransf 100.0 3.5E-40 7.7E-45 368.7 19.8 201 17-255 204-404 (434)
9 TIGR00563 rsmB ribosomal RNA s 100.0 1.4E-39 3E-44 363.1 20.5 171 56-255 216-388 (426)
10 PRK14902 16S rRNA methyltransf 100.0 4.6E-38 1E-42 352.5 22.5 204 16-263 203-406 (444)
11 PRK14904 16S rRNA methyltransf 100.0 4.8E-38 1E-42 352.6 21.6 176 56-262 228-403 (445)
12 PRK10901 16S rRNA methyltransf 100.0 1.1E-36 2.5E-41 339.8 20.5 197 16-255 196-392 (427)
13 KOG2360 Proliferation-associat 100.0 1.1E-29 2.4E-34 271.6 12.4 178 55-260 190-369 (413)
14 COG2242 CobL Precorrin-6B meth 99.6 4.9E-14 1.1E-18 140.3 15.1 144 66-268 22-166 (187)
15 PRK15128 23S rRNA m(5)C1962 me 99.5 7.2E-14 1.6E-18 155.3 13.7 166 56-264 201-370 (396)
16 COG1092 Predicted SAM-dependen 99.4 8.2E-13 1.8E-17 145.9 13.2 167 54-263 196-366 (393)
17 PRK00377 cbiT cobalt-precorrin 99.4 6.2E-12 1.3E-16 126.8 14.4 149 59-264 22-171 (198)
18 TIGR00537 hemK_rel_arch HemK-r 99.3 2E-11 4.3E-16 120.9 15.8 156 68-262 9-164 (179)
19 PF10672 Methyltrans_SAM: S-ad 99.3 3.3E-12 7.1E-17 136.1 9.3 141 56-243 104-246 (286)
20 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.1E-11 4.5E-16 144.8 15.0 161 56-264 519-681 (702)
21 TIGR01177 conserved hypothetic 99.3 3E-11 6.5E-16 131.2 14.9 131 64-239 162-298 (329)
22 PF13659 Methyltransf_26: Meth 99.3 1.7E-11 3.7E-16 111.9 9.5 116 79-237 1-117 (117)
23 PRK14967 putative methyltransf 99.3 1.3E-10 2.9E-15 119.2 16.8 148 74-261 32-182 (223)
24 PF12847 Methyltransf_18: Meth 99.2 1.2E-10 2.6E-15 105.3 12.9 110 78-236 1-112 (112)
25 TIGR03704 PrmC_rel_meth putati 99.2 1.9E-10 4.1E-15 120.8 16.2 149 78-262 86-239 (251)
26 PF05175 MTS: Methyltransferas 99.2 1E-10 2.2E-15 115.4 11.2 144 65-262 18-161 (170)
27 PTZ00146 fibrillarin; Provisio 99.2 4.4E-10 9.5E-15 120.0 14.8 108 74-234 128-236 (293)
28 PRK07402 precorrin-6B methylas 99.2 3.4E-10 7.4E-15 113.8 13.3 146 58-262 20-167 (196)
29 PRK04266 fibrillarin; Provisio 99.2 5E-10 1.1E-14 116.0 14.5 108 74-234 68-175 (226)
30 TIGR03533 L3_gln_methyl protei 99.2 1.2E-09 2.7E-14 116.6 18.0 143 76-255 119-266 (284)
31 COG2226 UbiE Methylase involve 99.1 1.8E-10 4E-15 119.8 10.8 119 74-246 47-165 (238)
32 PRK08287 cobalt-precorrin-6Y C 99.1 9E-10 1.9E-14 109.9 15.1 128 69-256 22-149 (187)
33 PF08704 GCD14: tRNA methyltra 99.1 2.4E-10 5.2E-15 119.7 11.4 139 56-255 20-163 (247)
34 PF01209 Ubie_methyltran: ubiE 99.1 1.4E-10 3.1E-15 120.5 9.0 129 72-254 41-169 (233)
35 TIGR03534 RF_mod_PrmC protein- 99.1 1.3E-09 2.8E-14 112.5 16.0 143 78-255 87-233 (251)
36 TIGR00080 pimt protein-L-isoas 99.1 5.1E-10 1.1E-14 114.3 12.6 106 72-234 71-176 (215)
37 TIGR00138 gidB 16S rRNA methyl 99.1 2E-09 4.3E-14 107.7 15.8 157 46-263 3-167 (181)
38 PF01135 PCMT: Protein-L-isoas 99.1 4.3E-10 9.4E-15 115.2 10.9 105 72-233 66-170 (209)
39 PRK14968 putative methyltransf 99.1 3.6E-09 7.8E-14 104.2 16.8 146 73-255 18-165 (188)
40 PRK11805 N5-glutamine S-adenos 99.1 1.5E-09 3.3E-14 117.2 13.9 140 79-255 134-278 (307)
41 PRK09328 N5-glutamine S-adenos 99.0 4.9E-09 1.1E-13 110.0 16.2 146 75-255 105-254 (275)
42 TIGR02469 CbiT precorrin-6Y C5 99.0 5.2E-09 1.1E-13 95.7 14.1 109 73-235 14-122 (124)
43 COG2519 GCD14 tRNA(1-methylade 99.0 1.9E-09 4.1E-14 112.2 11.8 111 70-237 86-198 (256)
44 PRK13942 protein-L-isoaspartat 99.0 2.2E-09 4.8E-14 109.8 12.2 84 72-184 70-153 (212)
45 COG2518 Pcm Protein-L-isoaspar 99.0 2.5E-09 5.4E-14 108.9 11.8 105 70-234 64-168 (209)
46 PRK00121 trmB tRNA (guanine-N( 99.0 3.2E-09 7E-14 107.7 12.4 127 78-252 40-167 (202)
47 PRK00107 gidB 16S rRNA methylt 99.0 1.4E-08 3.1E-13 102.3 16.6 122 76-258 43-164 (187)
48 TIGR00536 hemK_fam HemK family 99.0 1.1E-08 2.4E-13 109.1 16.2 139 78-252 114-257 (284)
49 PRK03522 rumB 23S rRNA methylu 99.0 3.1E-09 6.7E-14 115.0 11.4 107 75-238 170-276 (315)
50 TIGR00438 rrmJ cell division p 98.9 1.2E-08 2.5E-13 102.1 14.1 118 75-235 29-146 (188)
51 PRK13944 protein-L-isoaspartat 98.9 9.6E-09 2.1E-13 104.5 13.0 106 72-234 66-172 (205)
52 TIGR00479 rumA 23S rRNA (uraci 98.9 1.1E-08 2.3E-13 115.2 14.4 110 74-238 288-398 (431)
53 TIGR02752 MenG_heptapren 2-hep 98.9 9E-09 1.9E-13 105.5 12.6 112 73-235 40-151 (231)
54 PRK00312 pcm protein-L-isoaspa 98.9 1.3E-08 2.8E-13 103.5 12.8 105 72-236 72-176 (212)
55 PRK13168 rumA 23S rRNA m(5)U19 98.9 8.7E-09 1.9E-13 116.5 12.1 88 74-189 293-380 (443)
56 PF13847 Methyltransf_31: Meth 98.9 1.7E-08 3.7E-13 97.2 12.2 111 77-237 2-112 (152)
57 PRK11873 arsM arsenite S-adeno 98.9 1.4E-08 3.1E-13 106.9 12.7 115 72-237 71-185 (272)
58 COG2263 Predicted RNA methylas 98.9 5.5E-08 1.2E-12 97.3 15.0 127 73-261 40-166 (198)
59 PRK14966 unknown domain/N5-glu 98.9 4.6E-08 1E-12 109.2 16.0 145 76-255 249-397 (423)
60 PF02475 Met_10: Met-10+ like- 98.8 1.5E-08 3.3E-13 103.1 10.1 101 76-233 99-200 (200)
61 PLN02233 ubiquinone biosynthes 98.8 3.4E-08 7.3E-13 104.3 12.9 116 72-238 67-185 (261)
62 PRK09489 rsmC 16S ribosomal RN 98.8 7.9E-08 1.7E-12 105.4 16.0 129 64-242 182-310 (342)
63 PRK11188 rrmJ 23S rRNA methylt 98.8 4.3E-08 9.4E-13 100.3 13.1 129 76-253 49-180 (209)
64 COG4123 Predicted O-methyltran 98.8 4E-08 8.7E-13 102.8 12.6 153 67-255 33-186 (248)
65 COG2890 HemK Methylase of poly 98.8 7.4E-08 1.6E-12 102.9 14.7 144 81-263 113-261 (280)
66 TIGR00091 tRNA (guanine-N(7)-) 98.8 2.1E-08 4.5E-13 101.1 9.9 117 78-235 16-132 (194)
67 COG1041 Predicted DNA modifica 98.8 2.8E-08 6.1E-13 107.8 10.8 126 66-236 179-311 (347)
68 PRK15001 SAM-dependent 23S rib 98.7 1.7E-07 3.7E-12 104.0 15.8 135 56-238 204-343 (378)
69 PRK01544 bifunctional N5-gluta 98.7 1.8E-07 3.8E-12 107.7 16.2 142 78-255 138-285 (506)
70 PRK13943 protein-L-isoaspartat 98.7 8.9E-08 1.9E-12 104.2 12.8 105 73-234 75-179 (322)
71 COG2520 Predicted methyltransf 98.7 9.6E-08 2.1E-12 104.2 13.0 131 76-263 186-320 (341)
72 KOG1540 Ubiquinone biosynthesi 98.7 1.5E-07 3.2E-12 97.9 13.1 133 73-254 95-230 (296)
73 COG2265 TrmA SAM-dependent met 98.7 5.5E-08 1.2E-12 109.6 10.8 90 72-190 287-376 (432)
74 PRK08317 hypothetical protein; 98.7 2E-07 4.2E-12 94.5 13.9 129 73-253 14-146 (241)
75 PLN02244 tocopherol O-methyltr 98.7 1.8E-07 4E-12 102.4 13.6 108 77-237 117-225 (340)
76 TIGR02085 meth_trns_rumB 23S r 98.7 1E-07 2.2E-12 105.8 11.3 83 75-188 230-312 (374)
77 PRK14121 tRNA (guanine-N(7)-)- 98.7 1.5E-07 3.3E-12 104.3 12.5 119 76-238 120-238 (390)
78 PRK15451 tRNA cmo(5)U34 methyl 98.6 2.1E-07 4.7E-12 97.2 12.4 109 76-235 54-164 (247)
79 PLN02396 hexaprenyldihydroxybe 98.6 4.2E-07 9.2E-12 99.0 15.0 107 75-235 128-235 (322)
80 PRK10909 rsmD 16S rRNA m(2)G96 98.6 2E-07 4.3E-12 95.0 11.4 80 77-186 52-131 (199)
81 PF05958 tRNA_U5-meth_tr: tRNA 98.6 1.3E-07 2.8E-12 104.2 10.5 100 73-190 192-292 (352)
82 PLN02476 O-methyltransferase 98.6 1.9E-07 4E-12 99.6 11.2 147 39-235 80-228 (278)
83 KOG2904 Predicted methyltransf 98.6 3.5E-07 7.7E-12 95.9 12.4 146 79-252 149-300 (328)
84 PRK11207 tellurite resistance 98.6 4.7E-07 1E-11 91.6 13.0 109 73-234 25-133 (197)
85 PRK00517 prmA ribosomal protei 98.6 6.3E-07 1.4E-11 93.9 14.4 113 76-255 117-230 (250)
86 PF03602 Cons_hypoth95: Conser 98.6 1E-07 2.2E-12 95.8 8.1 83 78-187 42-125 (183)
87 PLN02781 Probable caffeoyl-CoA 98.6 3.4E-07 7.4E-12 95.3 12.2 119 69-236 59-179 (234)
88 TIGR00406 prmA ribosomal prote 98.6 1.1E-06 2.3E-11 94.3 15.6 117 76-253 157-274 (288)
89 COG2813 RsmC 16S RNA G1207 met 98.6 1.2E-06 2.7E-11 93.7 15.6 154 54-262 132-287 (300)
90 PRK11036 putative S-adenosyl-L 98.6 3.1E-07 6.8E-12 96.2 10.5 108 77-237 43-151 (255)
91 PRK10258 biotin biosynthesis p 98.6 7E-07 1.5E-11 93.0 13.0 116 63-237 27-142 (251)
92 PRK01683 trans-aconitate 2-met 98.5 4.6E-07 9.9E-12 94.7 11.5 105 73-235 26-130 (258)
93 PRK04338 N(2),N(2)-dimethylgua 98.5 2.5E-07 5.5E-12 102.9 9.9 101 78-234 57-157 (382)
94 TIGR00308 TRM1 tRNA(guanine-26 98.5 2.2E-07 4.7E-12 103.1 9.0 104 79-237 45-148 (374)
95 PRK15068 tRNA mo(5)U34 methylt 98.5 1.9E-06 4.2E-11 93.9 15.8 110 73-236 117-227 (322)
96 PF02353 CMAS: Mycolic acid cy 98.5 7.1E-07 1.5E-11 95.1 11.8 115 70-238 54-169 (273)
97 PF08241 Methyltransf_11: Meth 98.5 3.5E-07 7.5E-12 79.2 7.8 95 83-233 1-95 (95)
98 TIGR00740 methyltransferase, p 98.5 1.3E-06 2.7E-11 90.6 13.3 108 77-235 52-161 (239)
99 PRK14103 trans-aconitate 2-met 98.5 5.8E-07 1.2E-11 94.1 10.7 101 74-234 25-125 (255)
100 TIGR00452 methyltransferase, p 98.5 1.8E-06 3.9E-11 93.8 14.6 113 74-240 117-230 (314)
101 COG0293 FtsJ 23S rRNA methylas 98.5 5.1E-07 1.1E-11 92.0 9.8 139 76-260 43-181 (205)
102 cd02440 AdoMet_MTases S-adenos 98.5 1.3E-06 2.8E-11 74.8 11.0 103 81-234 1-103 (107)
103 PRK05031 tRNA (uracil-5-)-meth 98.5 3.7E-07 8E-12 100.9 9.5 60 79-149 207-266 (362)
104 KOG2915 tRNA(1-methyladenosine 98.5 1.3E-06 2.9E-11 91.6 12.8 134 72-263 99-236 (314)
105 PLN02336 phosphoethanolamine N 98.5 1.7E-06 3.6E-11 98.6 14.8 127 74-254 262-388 (475)
106 COG2227 UbiG 2-polyprenyl-3-me 98.5 3.4E-07 7.4E-12 94.9 8.1 106 77-237 58-163 (243)
107 PHA03412 putative methyltransf 98.5 7.7E-07 1.7E-11 92.7 10.7 114 77-233 48-161 (241)
108 COG2264 PrmA Ribosomal protein 98.5 1.6E-06 3.5E-11 93.0 13.3 127 76-263 160-286 (300)
109 PTZ00098 phosphoethanolamine N 98.5 1.4E-06 3.1E-11 92.1 12.8 110 73-236 47-157 (263)
110 PLN02672 methionine S-methyltr 98.5 2E-06 4.2E-11 105.8 15.6 145 79-255 119-295 (1082)
111 PF06325 PrmA: Ribosomal prote 98.5 1.2E-06 2.5E-11 94.4 12.0 123 76-263 159-281 (295)
112 PF01728 FtsJ: FtsJ-like methy 98.5 1.8E-07 4E-12 92.7 5.3 142 75-262 20-163 (181)
113 PF01170 UPF0020: Putative RNA 98.5 1.3E-06 2.7E-11 87.5 11.4 129 72-237 22-151 (179)
114 PF13649 Methyltransf_25: Meth 98.4 5.7E-07 1.2E-11 80.7 7.8 101 82-229 1-101 (101)
115 PF02384 N6_Mtase: N-6 DNA Met 98.4 8.4E-07 1.8E-11 95.4 10.4 160 55-236 23-184 (311)
116 TIGR02143 trmA_only tRNA (urac 98.4 9E-07 1.9E-11 97.6 10.6 59 80-149 199-257 (353)
117 COG0742 N6-adenine-specific me 98.4 1.4E-06 3E-11 87.7 10.8 82 78-187 43-125 (187)
118 TIGR00477 tehB tellurite resis 98.4 2.3E-06 5E-11 86.4 12.5 107 73-234 25-132 (195)
119 PLN03075 nicotianamine synthas 98.4 2.5E-06 5.5E-11 91.7 12.6 109 78-235 123-233 (296)
120 TIGR00095 RNA methyltransferas 98.4 1.6E-06 3.5E-11 87.5 10.3 83 78-187 49-132 (189)
121 PRK00216 ubiE ubiquinone/menaq 98.4 3.7E-06 8.1E-11 85.6 12.3 115 73-238 46-161 (239)
122 PF01596 Methyltransf_3: O-met 98.3 3.9E-07 8.6E-12 93.2 4.8 115 73-236 40-156 (205)
123 PRK00811 spermidine synthase; 98.3 7.3E-06 1.6E-10 87.7 14.0 127 78-253 76-207 (283)
124 PRK11705 cyclopropane fatty ac 98.3 3.3E-06 7.1E-11 94.2 11.3 110 72-238 161-270 (383)
125 PF09445 Methyltransf_15: RNA 98.3 1.9E-06 4.2E-11 85.1 8.4 83 80-191 1-84 (163)
126 COG4122 Predicted O-methyltran 98.3 2.9E-06 6.3E-11 87.6 10.0 123 64-238 45-169 (219)
127 PHA03411 putative methyltransf 98.3 1E-05 2.2E-10 86.2 14.1 143 74-255 60-206 (279)
128 PRK12335 tellurite resistance 98.3 6.8E-06 1.5E-10 87.9 12.8 102 78-234 120-222 (287)
129 PRK04457 spermidine synthase; 98.3 8.7E-06 1.9E-10 86.3 13.3 115 77-238 65-180 (262)
130 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 7.1E-06 1.5E-10 82.7 11.7 110 76-238 37-146 (223)
131 COG2230 Cfa Cyclopropane fatty 98.2 6E-06 1.3E-10 88.1 11.1 114 70-237 64-178 (283)
132 smart00650 rADc Ribosomal RNA 98.2 8.1E-06 1.8E-10 80.3 11.2 80 73-186 8-87 (169)
133 TIGR02716 C20_methyl_CrtF C-20 98.2 1.2E-05 2.6E-10 86.5 13.3 118 73-243 144-262 (306)
134 PRK06922 hypothetical protein; 98.2 1.1E-05 2.4E-10 94.4 13.6 128 73-239 413-541 (677)
135 smart00828 PKS_MT Methyltransf 98.2 2.6E-05 5.7E-10 79.6 14.6 104 80-236 1-105 (224)
136 PF01269 Fibrillarin: Fibrilla 98.2 1.4E-05 3E-10 82.4 11.9 137 74-263 69-210 (229)
137 TIGR01983 UbiG ubiquinone bios 98.2 1.1E-05 2.4E-10 82.2 11.2 108 77-237 44-151 (224)
138 PRK05134 bifunctional 3-demeth 98.2 1.4E-05 3.1E-10 82.1 11.8 110 75-238 45-154 (233)
139 PRK01581 speE spermidine synth 98.2 1.5E-05 3.2E-10 87.9 12.3 137 70-255 143-289 (374)
140 KOG1596 Fibrillarin and relate 98.2 8E-06 1.7E-10 84.4 9.2 127 74-253 152-282 (317)
141 PRK03612 spermidine synthase; 98.1 1.4E-05 3.1E-10 92.4 12.5 128 77-252 296-430 (521)
142 PLN02490 MPBQ/MSBQ methyltrans 98.1 1E-05 2.2E-10 88.8 10.4 103 77-234 112-214 (340)
143 TIGR00417 speE spermidine synt 98.1 2.7E-05 5.8E-10 82.7 13.0 129 74-252 69-201 (270)
144 TIGR02072 BioC biotin biosynth 98.1 1.5E-05 3.3E-10 81.0 10.6 102 78-235 34-135 (240)
145 TIGR00006 S-adenosyl-methyltra 98.1 3.7E-05 8.1E-10 83.1 13.6 90 73-188 15-104 (305)
146 PF02390 Methyltransf_4: Putat 98.1 1.7E-05 3.7E-10 80.5 10.1 135 81-262 20-157 (195)
147 TIGR02021 BchM-ChlM magnesium 98.0 5.5E-05 1.2E-09 77.3 12.4 62 76-148 53-115 (219)
148 PRK14896 ksgA 16S ribosomal RN 98.0 1.1E-05 2.5E-10 85.0 7.3 80 73-188 24-103 (258)
149 TIGR03438 probable methyltrans 98.0 6.2E-05 1.3E-09 81.2 13.1 122 77-250 62-189 (301)
150 PF13489 Methyltransf_23: Meth 98.0 2.2E-05 4.7E-10 74.8 8.5 99 76-238 20-118 (161)
151 COG2521 Predicted archaeal met 98.0 6.7E-06 1.5E-10 84.8 5.1 133 75-255 131-269 (287)
152 PLN02336 phosphoethanolamine N 98.0 6.8E-05 1.5E-09 85.5 13.1 111 73-235 32-142 (475)
153 PLN02589 caffeoyl-CoA O-methyl 98.0 4.2E-05 9.2E-10 80.5 10.5 121 65-233 66-188 (247)
154 PRK00050 16S rRNA m(4)C1402 me 98.0 1.3E-05 2.8E-10 86.5 6.7 90 73-189 14-103 (296)
155 COG0275 Predicted S-adenosylme 97.9 0.00016 3.5E-09 77.5 14.7 193 72-299 17-300 (314)
156 KOG4589 Cell division protein 97.9 6.2E-05 1.3E-09 75.5 10.7 133 76-254 67-200 (232)
157 PF08242 Methyltransf_12: Meth 97.9 4.8E-06 1E-10 74.1 2.7 99 83-231 1-99 (99)
158 PTZ00338 dimethyladenosine tra 97.9 2.6E-05 5.5E-10 84.2 8.3 84 72-189 30-114 (294)
159 PF01795 Methyltransf_5: MraW 97.9 1.3E-05 2.8E-10 86.7 5.9 194 73-300 15-299 (310)
160 PF05401 NodS: Nodulation prot 97.9 9E-05 2E-09 75.3 11.2 141 74-268 39-185 (201)
161 PRK11088 rrmA 23S rRNA methylt 97.9 5E-05 1.1E-09 80.5 9.7 98 77-235 84-181 (272)
162 COG4076 Predicted RNA methylas 97.9 1.5E-05 3.1E-10 79.9 5.1 99 80-232 34-132 (252)
163 COG0220 Predicted S-adenosylme 97.9 6.4E-05 1.4E-09 78.3 9.6 125 80-251 50-174 (227)
164 PF03848 TehB: Tellurite resis 97.8 0.00018 3.9E-09 73.1 12.2 106 75-235 27-133 (192)
165 TIGR03840 TMPT_Se_Te thiopurin 97.8 0.00015 3.3E-09 74.6 11.2 110 77-238 33-155 (213)
166 TIGR02987 met_A_Alw26 type II 97.8 0.00012 2.7E-09 84.7 11.8 159 78-253 31-215 (524)
167 smart00138 MeTrc Methyltransfe 97.8 0.0002 4.4E-09 76.0 12.4 113 77-234 98-241 (264)
168 PLN02585 magnesium protoporphy 97.8 0.00043 9.3E-09 75.5 14.8 46 78-134 144-189 (315)
169 KOG1270 Methyltransferases [Co 97.8 8.3E-05 1.8E-09 78.2 8.6 100 79-235 90-195 (282)
170 KOG1271 Methyltransferases [Ge 97.8 0.00012 2.6E-09 73.4 9.1 114 80-242 69-188 (227)
171 KOG1099 SAM-dependent methyltr 97.7 8.2E-05 1.8E-09 76.7 7.5 134 79-258 42-183 (294)
172 KOG1663 O-methyltransferase [S 97.7 0.00025 5.4E-09 73.4 10.7 147 40-235 34-183 (237)
173 KOG2671 Putative RNA methylase 97.7 4.4E-05 9.6E-10 82.6 5.5 146 57-233 187-352 (421)
174 COG0286 HsdM Type I restrictio 97.7 0.00079 1.7E-08 77.6 15.8 175 58-253 166-346 (489)
175 PLN02366 spermidine synthase 97.7 0.0006 1.3E-08 74.1 13.9 111 77-233 90-204 (308)
176 PRK10742 putative methyltransf 97.6 0.00013 2.9E-09 76.6 8.0 90 68-188 76-176 (250)
177 PRK00274 ksgA 16S ribosomal RN 97.6 0.00013 2.8E-09 77.6 8.1 80 73-187 37-116 (272)
178 PRK07580 Mg-protoporphyrin IX 97.6 0.00052 1.1E-08 70.1 12.0 59 76-145 61-120 (230)
179 PRK06202 hypothetical protein; 97.6 0.00039 8.4E-09 71.8 11.1 110 74-234 56-165 (232)
180 PRK11727 23S rRNA mA1618 methy 97.6 0.00074 1.6E-08 73.8 13.2 88 78-191 114-204 (321)
181 PLN02823 spermine synthase 97.6 0.00067 1.4E-08 74.6 12.4 136 70-252 96-237 (336)
182 KOG2187 tRNA uracil-5-methyltr 97.6 0.00017 3.8E-09 81.7 7.8 114 73-239 378-493 (534)
183 TIGR03587 Pse_Me-ase pseudamin 97.5 0.00055 1.2E-08 70.0 10.8 60 75-148 40-99 (204)
184 PF02527 GidB: rRNA small subu 97.5 0.00046 9.9E-09 69.8 9.8 97 81-234 51-147 (184)
185 PRK05785 hypothetical protein; 97.5 0.00055 1.2E-08 71.0 10.5 92 77-229 50-141 (226)
186 COG1889 NOP1 Fibrillarin-like 97.5 0.0013 2.8E-08 67.0 12.7 140 75-268 73-217 (231)
187 COG4106 Tam Trans-aconitate me 97.5 0.00033 7.2E-09 72.0 8.1 100 76-233 28-127 (257)
188 COG3963 Phospholipid N-methylt 97.4 0.0011 2.3E-08 65.8 10.8 144 42-237 11-158 (194)
189 PRK13255 thiopurine S-methyltr 97.4 0.0012 2.5E-08 68.4 11.7 42 76-128 35-76 (218)
190 PRK01544 bifunctional N5-gluta 97.4 0.00063 1.4E-08 78.7 10.4 117 78-236 347-463 (506)
191 KOG1661 Protein-L-isoaspartate 97.4 0.00054 1.2E-08 70.1 8.5 105 73-233 75-191 (237)
192 PF03291 Pox_MCEL: mRNA cappin 97.4 0.00092 2E-08 73.4 10.8 118 78-238 62-189 (331)
193 TIGR00755 ksgA dimethyladenosi 97.4 0.00057 1.2E-08 71.8 8.7 65 73-150 24-88 (253)
194 KOG1098 Putative SAM-dependent 97.3 0.00021 4.5E-09 82.1 5.0 127 76-252 42-172 (780)
195 KOG2899 Predicted methyltransf 97.3 0.0012 2.6E-08 68.9 9.2 47 78-133 58-104 (288)
196 PRK11760 putative 23S rRNA C24 97.2 0.00098 2.1E-08 73.1 8.1 75 76-189 209-283 (357)
197 PF08003 Methyltransf_9: Prote 97.2 0.0032 7E-08 68.0 11.7 107 78-238 115-222 (315)
198 COG0030 KsgA Dimethyladenosine 97.2 0.0016 3.4E-08 69.1 9.1 85 71-188 23-107 (259)
199 PF01564 Spermine_synth: Sperm 97.1 0.0015 3.2E-08 68.9 8.2 134 70-253 69-207 (246)
200 PRK11783 rlmL 23S rRNA m(2)G24 97.1 0.0059 1.3E-07 73.5 14.1 124 77-235 189-347 (702)
201 PF07021 MetW: Methionine bios 97.1 0.0028 6.1E-08 64.4 9.4 71 76-182 11-81 (193)
202 COG0116 Predicted N6-adenine-s 97.0 0.0068 1.5E-07 67.4 12.7 129 72-236 185-345 (381)
203 KOG4300 Predicted methyltransf 97.0 0.0023 4.9E-08 65.6 8.0 104 78-234 76-181 (252)
204 PF02005 TRM: N2,N2-dimethylgu 97.0 0.0024 5.1E-08 71.4 9.0 104 79-237 50-155 (377)
205 PF05185 PRMT5: PRMT5 arginine 97.0 0.0026 5.7E-08 72.6 9.1 126 79-251 187-315 (448)
206 COG0357 GidB Predicted S-adeno 96.9 0.0032 6.9E-08 65.2 8.8 132 44-232 24-165 (215)
207 PF05219 DREV: DREV methyltran 96.8 0.0047 1E-07 65.4 9.1 94 78-234 94-187 (265)
208 KOG3420 Predicted RNA methylas 96.8 0.001 2.2E-08 64.6 3.8 92 65-191 33-126 (185)
209 PF00891 Methyltransf_2: O-met 96.7 0.0093 2E-07 61.9 10.1 115 73-247 95-211 (241)
210 PF12147 Methyltransf_20: Puta 96.7 0.02 4.3E-07 61.7 12.4 130 79-254 136-266 (311)
211 PF01861 DUF43: Protein of unk 96.7 0.014 3.1E-07 61.2 11.0 124 78-255 44-170 (243)
212 TIGR00478 tly hemolysin TlyA f 96.5 0.0043 9.3E-08 64.8 6.1 39 77-125 74-112 (228)
213 KOG1541 Predicted protein carb 96.5 0.016 3.4E-07 60.1 9.8 143 57-253 27-174 (270)
214 COG0421 SpeE Spermidine syntha 96.4 0.015 3.3E-07 62.5 9.4 120 70-237 69-192 (282)
215 KOG2730 Methylase [General fun 96.3 0.0026 5.5E-08 65.7 3.0 89 78-195 94-184 (263)
216 PRK13256 thiopurine S-methyltr 96.3 0.029 6.3E-07 58.6 10.8 115 75-238 40-166 (226)
217 KOG0820 Ribosomal RNA adenine 96.2 0.018 3.9E-07 61.3 8.5 80 73-186 53-133 (315)
218 TIGR02081 metW methionine bios 96.2 0.019 4.1E-07 57.7 8.3 55 77-148 12-66 (194)
219 KOG3191 Predicted N6-DNA-methy 96.1 0.17 3.6E-06 51.3 14.1 144 79-259 44-189 (209)
220 TIGR00497 hsdM type I restrict 96.1 0.033 7.2E-07 64.5 10.8 153 56-232 193-352 (501)
221 cd00315 Cyt_C5_DNA_methylase C 96.1 0.011 2.3E-07 63.3 6.3 79 81-194 2-80 (275)
222 PF00398 RrnaAD: Ribosomal RNA 96.0 0.016 3.5E-07 61.4 7.4 65 73-150 25-89 (262)
223 PF05724 TPMT: Thiopurine S-me 96.0 0.032 7E-07 57.8 9.5 114 75-239 34-159 (218)
224 KOG3010 Methyltransferase [Gen 96.0 0.026 5.6E-07 59.2 8.6 125 75-255 29-157 (261)
225 COG1867 TRM1 N2,N2-dimethylgua 95.8 0.023 5.1E-07 62.7 7.6 121 79-255 53-173 (380)
226 PF10294 Methyltransf_16: Puta 95.8 0.035 7.6E-07 55.3 8.4 59 76-144 43-104 (173)
227 TIGR01444 fkbM_fam methyltrans 95.8 0.03 6.6E-07 52.8 7.6 57 81-146 1-57 (143)
228 PLN02232 ubiquinone biosynthes 95.8 0.026 5.6E-07 55.4 7.3 81 115-238 1-84 (160)
229 PF04816 DUF633: Family of unk 95.7 0.21 4.6E-06 51.4 13.7 120 82-262 1-121 (205)
230 KOG1499 Protein arginine N-met 95.6 0.062 1.4E-06 59.0 9.8 112 77-239 59-171 (346)
231 KOG1253 tRNA methyltransferase 95.5 0.012 2.7E-07 66.8 4.0 114 72-237 103-217 (525)
232 COG3897 Predicted methyltransf 95.4 0.035 7.6E-07 56.6 6.4 57 78-145 79-135 (218)
233 TIGR03439 methyl_EasF probable 95.3 0.34 7.3E-06 53.3 14.3 134 76-251 74-210 (319)
234 COG1189 Predicted rRNA methyla 95.2 0.071 1.5E-06 55.9 8.2 38 78-125 79-116 (245)
235 KOG1975 mRNA cap methyltransfe 95.1 0.079 1.7E-06 57.7 8.5 130 76-254 115-250 (389)
236 KOG2361 Predicted methyltransf 95.1 0.055 1.2E-06 56.8 7.1 109 81-234 74-182 (264)
237 PF13578 Methyltransf_24: Meth 95.1 0.018 3.9E-07 52.0 3.1 102 83-233 1-103 (106)
238 PF08123 DOT1: Histone methyla 94.8 0.12 2.6E-06 53.2 8.7 51 73-132 37-87 (205)
239 PF06080 DUF938: Protein of un 94.5 0.24 5.2E-06 51.1 9.8 133 79-254 26-164 (204)
240 COG1064 AdhP Zn-dependent alco 94.4 0.15 3.2E-06 56.4 8.6 99 74-239 162-261 (339)
241 PF04445 SAM_MT: Putative SAM- 94.2 0.1 2.2E-06 54.9 6.5 86 69-185 64-160 (234)
242 PF01739 CheR: CheR methyltran 93.9 0.38 8.2E-06 49.3 9.9 117 78-235 31-175 (196)
243 PF00145 DNA_methylase: C-5 cy 93.9 0.24 5.2E-06 52.8 8.9 78 81-194 2-79 (335)
244 PRK00536 speE spermidine synth 93.8 0.63 1.4E-05 49.8 11.6 121 70-255 65-189 (262)
245 COG4976 Predicted methyltransf 93.6 0.1 2.2E-06 54.6 5.2 129 75-263 122-263 (287)
246 PF13679 Methyltransf_32: Meth 93.6 0.27 5.9E-06 47.2 7.9 56 75-135 22-77 (141)
247 PRK10611 chemotaxis methyltran 93.6 0.31 6.7E-06 52.8 9.0 50 80-130 117-166 (287)
248 KOG2078 tRNA modification enzy 93.4 0.038 8.2E-07 62.0 1.8 64 76-150 247-312 (495)
249 KOG1500 Protein arginine N-met 93.3 0.42 9.2E-06 52.4 9.5 122 78-253 177-302 (517)
250 KOG2782 Putative SAM dependent 93.3 0.033 7.1E-07 57.6 1.1 103 65-190 24-132 (303)
251 KOG1227 Putative methyltransfe 93.2 0.051 1.1E-06 58.6 2.4 59 78-146 194-254 (351)
252 PRK01747 mnmC bifunctional tRN 93.2 1.1 2.3E-05 53.8 13.7 137 77-259 56-223 (662)
253 PF10354 DUF2431: Domain of un 92.9 1.3 2.9E-05 44.1 11.7 60 173-241 72-131 (166)
254 PF06962 rRNA_methylase: Putat 92.6 0.89 1.9E-05 44.3 9.6 109 113-254 1-113 (140)
255 PF03059 NAS: Nicotianamine sy 92.4 1.1 2.3E-05 48.5 10.9 105 80-233 122-228 (276)
256 PF05891 Methyltransf_PK: AdoM 91.7 0.4 8.6E-06 49.9 6.4 104 78-233 55-159 (218)
257 KOG0024 Sorbitol dehydrogenase 91.7 0.57 1.2E-05 51.4 7.9 108 74-237 165-275 (354)
258 PF05971 Methyltransf_10: Prot 91.2 1.2 2.7E-05 48.5 9.9 155 79-263 103-283 (299)
259 COG4798 Predicted methyltransf 91.1 2.5 5.5E-05 43.5 11.3 40 72-119 42-81 (238)
260 COG4262 Predicted spermidine s 90.9 1.8 4E-05 48.2 10.8 81 75-185 286-374 (508)
261 COG0500 SmtA SAM-dependent met 90.9 4 8.7E-05 35.5 11.3 108 82-243 52-163 (257)
262 PF01234 NNMT_PNMT_TEMT: NNMT/ 90.7 0.84 1.8E-05 48.7 7.9 51 211-263 175-237 (256)
263 PF05148 Methyltransf_8: Hypot 90.7 1.1 2.3E-05 46.6 8.3 124 65-262 59-184 (219)
264 TIGR00675 dcm DNA-methyltransf 90.1 0.48 1E-05 51.8 5.6 77 82-194 1-77 (315)
265 PRK04148 hypothetical protein; 89.5 0.72 1.6E-05 44.6 5.7 53 78-148 16-69 (134)
266 PF04989 CmcI: Cephalosporin h 89.2 0.52 1.1E-05 48.7 4.8 133 58-233 11-145 (206)
267 COG1352 CheR Methylase of chem 88.8 4.2 9E-05 43.8 11.4 47 79-129 97-147 (268)
268 PRK11524 putative methyltransf 88.4 0.8 1.7E-05 49.2 5.8 45 77-132 207-251 (284)
269 COG1063 Tdh Threonine dehydrog 88.3 2.6 5.6E-05 46.6 9.9 104 75-235 165-269 (350)
270 PF00107 ADH_zinc_N: Zinc-bind 88.2 0.82 1.8E-05 42.2 5.0 88 90-236 3-90 (130)
271 PF01555 N6_N4_Mtase: DNA meth 86.9 1.1 2.4E-05 45.0 5.5 42 76-128 189-230 (231)
272 PF01189 Nol1_Nop2_Fmu: NOL1/N 86.9 0.0013 2.8E-08 70.7 -16.6 65 180-244 1-65 (283)
273 KOG3115 Methyltransferase-like 86.9 2.3 4.9E-05 44.1 7.5 117 79-237 61-185 (249)
274 TIGR02822 adh_fam_2 zinc-bindi 86.6 5.9 0.00013 43.0 11.3 51 74-138 161-212 (329)
275 COG0270 Dcm Site-specific DNA 86.5 2.1 4.6E-05 47.0 7.8 84 79-195 3-86 (328)
276 PRK09880 L-idonate 5-dehydroge 86.2 6.4 0.00014 42.8 11.3 52 75-138 166-217 (343)
277 TIGR03451 mycoS_dep_FDH mycoth 85.3 3.4 7.4E-05 45.2 8.7 52 74-137 172-223 (358)
278 COG2933 Predicted SAM-dependen 84.9 1.7 3.8E-05 46.4 5.8 70 76-184 209-278 (358)
279 COG2384 Predicted SAM-dependen 84.3 19 0.00041 37.8 12.9 120 77-255 15-135 (226)
280 cd08230 glucose_DH Glucose deh 84.0 4.6 9.9E-05 44.1 9.0 49 76-137 170-221 (355)
281 cd08237 ribitol-5-phosphate_DH 83.9 5 0.00011 43.7 9.2 46 75-128 160-206 (341)
282 PF03141 Methyltransf_29: Puta 83.6 1.6 3.4E-05 50.5 5.2 102 80-239 119-223 (506)
283 PF05430 Methyltransf_30: S-ad 83.2 1.7 3.8E-05 41.3 4.6 58 175-258 49-106 (124)
284 PF10237 N6-adenineMlase: Prob 83.1 2.9 6.3E-05 41.7 6.3 60 174-264 84-143 (162)
285 PRK13699 putative methylase; P 82.9 2.4 5.2E-05 44.3 5.9 48 76-134 161-208 (227)
286 cd08281 liver_ADH_like1 Zinc-d 82.7 4.3 9.4E-05 44.7 8.2 52 74-137 187-238 (371)
287 PRK10458 DNA cytosine methylas 82.0 4.6 9.9E-05 46.8 8.2 99 78-192 87-185 (467)
288 PRK11524 putative methyltransf 81.9 1.9 4.2E-05 46.3 4.9 57 175-238 26-82 (284)
289 PF11599 AviRa: RRNA methyltra 81.5 3.2 7E-05 43.3 6.0 48 78-132 51-98 (246)
290 cd08254 hydroxyacyl_CoA_DH 6-h 80.1 11 0.00023 40.1 9.9 45 75-128 162-206 (338)
291 PHA01634 hypothetical protein 79.8 8.3 0.00018 37.4 7.7 48 78-135 28-75 (156)
292 KOG3987 Uncharacterized conser 79.0 0.85 1.9E-05 47.2 1.0 39 78-127 112-150 (288)
293 PF09243 Rsm22: Mitochondrial 77.4 13 0.00028 39.9 9.4 47 80-134 35-81 (274)
294 PRK10309 galactitol-1-phosphat 76.9 16 0.00034 39.7 10.1 52 74-137 156-207 (347)
295 COG1568 Predicted methyltransf 76.5 3.3 7.1E-05 44.8 4.4 141 54-249 127-273 (354)
296 TIGR03201 dearomat_had 6-hydro 76.3 16 0.00034 39.9 9.9 50 74-137 162-212 (349)
297 TIGR03366 HpnZ_proposed putati 75.6 14 0.0003 39.0 9.1 51 75-137 117-167 (280)
298 KOG3045 Predicted RNA methylas 74.9 14 0.0003 39.8 8.5 112 79-265 181-293 (325)
299 PLN02740 Alcohol dehydrogenase 74.0 17 0.00038 40.2 9.7 53 74-138 194-246 (381)
300 cd08239 THR_DH_like L-threonin 73.5 14 0.00029 39.9 8.5 52 74-137 159-210 (339)
301 PRK09424 pntA NAD(P) transhydr 72.8 26 0.00056 41.2 10.9 50 74-137 160-210 (509)
302 TIGR02818 adh_III_F_hyde S-(hy 71.5 14 0.0003 40.8 8.1 52 74-137 181-232 (368)
303 TIGR02825 B4_12hDH leukotriene 68.7 26 0.00056 37.5 9.3 51 74-138 134-186 (325)
304 cd08238 sorbose_phosphate_red 68.2 22 0.00047 39.9 8.9 49 74-129 171-221 (410)
305 PLN03154 putative allyl alcoho 67.8 14 0.00031 40.5 7.1 52 74-138 154-207 (348)
306 PLN02827 Alcohol dehydrogenase 67.6 27 0.00059 38.8 9.4 52 74-137 189-240 (378)
307 KOG0023 Alcohol dehydrogenase, 66.5 22 0.00047 39.5 8.0 59 75-147 178-238 (360)
308 PF01555 N6_N4_Mtase: DNA meth 64.9 12 0.00027 37.3 5.5 80 177-262 1-80 (231)
309 KOG1709 Guanidinoacetate methy 64.7 41 0.0009 35.5 9.1 112 77-243 100-212 (271)
310 PRK12429 3-hydroxybutyrate deh 63.6 48 0.001 33.7 9.7 61 79-148 4-64 (258)
311 KOG3178 Hydroxyindole-O-methyl 63.4 23 0.0005 39.5 7.6 101 79-238 178-278 (342)
312 PF03721 UDPG_MGDP_dh_N: UDP-g 63.0 54 0.0012 33.1 9.7 127 88-262 7-149 (185)
313 PRK13699 putative methylase; P 61.9 33 0.00072 35.8 8.2 71 174-255 18-88 (227)
314 cd08277 liver_alcohol_DH_like 61.8 50 0.0011 36.3 10.0 53 74-138 180-232 (365)
315 PRK12939 short chain dehydroge 61.3 54 0.0012 33.1 9.6 61 79-148 7-67 (250)
316 PF13636 Nol1_Nop2_Fmu_2: pre- 61.1 8.1 0.00018 35.4 3.1 70 556-645 11-80 (102)
317 cd08278 benzyl_alcohol_DH Benz 60.3 41 0.00088 37.0 9.0 47 74-128 182-228 (365)
318 PRK06194 hypothetical protein; 59.2 1.2E+02 0.0025 31.8 11.9 61 79-148 6-66 (287)
319 cd08295 double_bond_reductase_ 59.1 59 0.0013 35.1 9.9 54 74-138 147-200 (338)
320 cd08242 MDR_like Medium chain 58.7 89 0.0019 33.1 11.1 51 74-137 151-201 (319)
321 cd05278 FDH_like Formaldehyde 58.4 38 0.00082 36.3 8.2 47 74-128 163-209 (347)
322 PRK06181 short chain dehydroge 57.7 72 0.0016 32.8 9.9 59 81-148 3-61 (263)
323 cd08300 alcohol_DH_class_III c 57.6 60 0.0013 35.7 9.8 52 74-137 182-233 (368)
324 KOG1269 SAM-dependent methyltr 56.7 23 0.0005 39.9 6.3 112 67-232 99-212 (364)
325 cd08294 leukotriene_B4_DH_like 56.6 77 0.0017 33.6 10.1 49 74-137 139-190 (329)
326 PF11899 DUF3419: Protein of u 56.3 16 0.00035 41.3 5.0 63 58-131 14-77 (380)
327 PRK07533 enoyl-(acyl carrier p 55.8 94 0.002 32.3 10.4 133 78-234 9-147 (258)
328 cd08293 PTGR2 Prostaglandin re 55.2 42 0.00092 36.0 7.9 52 75-138 149-204 (345)
329 PF06859 Bin3: Bicoid-interact 54.7 13 0.00027 35.0 3.2 20 214-233 23-42 (110)
330 PRK08594 enoyl-(acyl carrier p 54.6 93 0.002 32.4 10.2 64 78-148 6-70 (257)
331 PF07669 Eco57I: Eco57I restri 54.2 48 0.001 30.4 7.0 78 176-263 2-81 (106)
332 TIGR01202 bchC 2-desacetyl-2-h 54.2 75 0.0016 34.1 9.6 18 217-234 213-230 (308)
333 cd08236 sugar_DH NAD(P)-depend 54.2 46 0.00099 35.7 8.0 44 73-127 154-200 (343)
334 PRK05599 hypothetical protein; 54.0 81 0.0018 32.5 9.5 60 81-149 2-61 (246)
335 PRK08339 short chain dehydroge 52.9 1.9E+02 0.0041 30.1 12.2 62 79-148 8-69 (263)
336 cd08234 threonine_DH_like L-th 52.6 92 0.002 33.1 10.0 47 73-127 154-200 (334)
337 TIGR02819 fdhA_non_GSH formald 52.1 71 0.0015 35.9 9.3 52 74-137 181-232 (393)
338 cd08301 alcohol_DH_plants Plan 51.4 79 0.0017 34.6 9.5 52 74-137 183-234 (369)
339 PF07091 FmrO: Ribosomal RNA m 50.8 49 0.0011 35.5 7.2 54 75-137 102-155 (251)
340 KOG1501 Arginine N-methyltrans 50.5 30 0.00066 39.8 5.9 57 81-147 69-126 (636)
341 cd08255 2-desacetyl-2-hydroxye 50.5 74 0.0016 32.9 8.6 45 73-128 92-139 (277)
342 PRK08324 short chain dehydroge 50.2 86 0.0019 38.0 10.2 133 78-235 421-557 (681)
343 cd08283 FDH_like_1 Glutathione 49.7 24 0.00053 39.1 5.2 48 73-129 179-227 (386)
344 PRK13394 3-hydroxybutyrate deh 49.6 1.7E+02 0.0036 29.9 11.0 61 79-148 7-67 (262)
345 PF00106 adh_short: short chai 49.0 1.5E+02 0.0032 28.0 9.8 92 86-195 6-99 (167)
346 PRK07326 short chain dehydroge 49.0 1.1E+02 0.0023 30.9 9.3 60 79-148 6-65 (237)
347 PRK08643 acetoin reductase; Va 48.8 2E+02 0.0044 29.3 11.5 59 81-148 4-62 (256)
348 cd08232 idonate-5-DH L-idonate 48.7 78 0.0017 33.9 8.7 42 77-127 164-206 (339)
349 PRK12937 short chain dehydroge 48.5 1.2E+02 0.0026 30.6 9.6 137 79-238 5-142 (245)
350 PF07279 DUF1442: Protein of u 48.1 59 0.0013 34.1 7.1 70 69-146 33-105 (218)
351 PLN02514 cinnamyl-alcohol dehy 47.8 1.2E+02 0.0027 33.1 10.2 50 76-137 178-227 (357)
352 cd05285 sorbitol_DH Sorbitol d 47.4 1.3E+02 0.0028 32.5 10.1 48 73-128 157-204 (343)
353 PLN03209 translocon at the inn 47.2 3.8E+02 0.0083 32.2 14.5 68 73-148 74-149 (576)
354 PRK15182 Vi polysaccharide bio 46.1 2.4E+02 0.0052 32.4 12.4 118 87-254 12-138 (425)
355 PF02086 MethyltransfD12: D12 45.8 26 0.00056 36.3 4.4 43 78-131 20-62 (260)
356 PF03492 Methyltransf_7: SAM d 45.2 1.3E+02 0.0029 33.3 9.9 43 79-121 17-66 (334)
357 cd08285 NADP_ADH NADP(H)-depen 44.8 1.5E+02 0.0031 32.2 10.1 52 74-137 162-213 (351)
358 PRK06079 enoyl-(acyl carrier p 44.8 1.9E+02 0.004 29.9 10.5 131 79-235 7-143 (252)
359 PRK06914 short chain dehydroge 44.6 1.5E+02 0.0033 30.8 9.9 60 81-148 5-65 (280)
360 PLN02668 indole-3-acetate carb 43.9 1.8E+02 0.004 33.1 10.8 52 79-130 64-121 (386)
361 PRK08945 putative oxoacyl-(acy 43.8 1.9E+02 0.004 29.5 10.2 63 76-146 9-71 (247)
362 PRK07576 short chain dehydroge 43.8 2.4E+02 0.0051 29.3 11.2 62 78-148 8-69 (264)
363 TIGR01963 PHB_DH 3-hydroxybuty 43.7 3.4E+02 0.0073 27.4 12.1 55 86-148 7-61 (255)
364 PRK08415 enoyl-(acyl carrier p 43.6 2.1E+02 0.0045 30.3 10.8 133 79-235 5-143 (274)
365 PRK07523 gluconate 5-dehydroge 43.3 2.4E+02 0.0051 28.9 10.9 62 78-148 9-70 (255)
366 PRK06701 short chain dehydroge 43.3 1.6E+02 0.0034 31.3 9.9 132 78-236 45-182 (290)
367 PRK05867 short chain dehydroge 43.2 2.1E+02 0.0045 29.3 10.5 61 79-148 9-69 (253)
368 PRK06113 7-alpha-hydroxysteroi 43.0 2.3E+02 0.005 29.0 10.8 61 79-148 11-71 (255)
369 PRK06949 short chain dehydroge 42.9 3.6E+02 0.0079 27.3 12.3 61 79-148 9-69 (258)
370 TIGR03026 NDP-sugDHase nucleot 42.6 2.8E+02 0.0061 31.3 12.3 35 219-254 104-138 (411)
371 PLN02586 probable cinnamyl alc 41.6 1.4E+02 0.0029 33.0 9.4 50 76-137 181-230 (360)
372 PRK12829 short chain dehydroge 41.1 1.1E+02 0.0024 31.3 8.0 61 77-148 9-69 (264)
373 PRK07102 short chain dehydroge 40.8 2.3E+02 0.0049 28.7 10.3 60 81-148 3-62 (243)
374 PRK08340 glucose-1-dehydrogena 40.7 1.7E+02 0.0038 30.0 9.5 58 81-148 2-59 (259)
375 PRK08085 gluconate 5-dehydroge 40.4 2.7E+02 0.0057 28.5 10.8 61 79-148 9-69 (254)
376 PRK07063 short chain dehydroge 40.4 2.1E+02 0.0045 29.4 10.0 62 79-148 7-69 (260)
377 PRK07832 short chain dehydroge 40.4 1.4E+02 0.003 31.1 8.8 55 86-147 6-60 (272)
378 PRK07478 short chain dehydroge 40.2 2.7E+02 0.0058 28.4 10.8 61 79-148 6-66 (254)
379 PLN02702 L-idonate 5-dehydroge 40.1 2.3E+02 0.0051 30.8 10.9 53 74-138 177-229 (364)
380 PRK07231 fabG 3-ketoacyl-(acyl 39.8 2.2E+02 0.0047 28.8 9.9 60 79-148 5-64 (251)
381 TIGR02415 23BDH acetoin reduct 39.6 2.5E+02 0.0055 28.4 10.4 55 86-148 6-60 (254)
382 cd08298 CAD2 Cinnamyl alcohol 39.1 2.8E+02 0.006 29.4 11.1 45 74-127 163-207 (329)
383 cd08233 butanediol_DH_like (2R 38.9 1.7E+02 0.0038 31.5 9.6 47 74-128 168-214 (351)
384 PF11968 DUF3321: Putative met 38.7 62 0.0014 34.0 5.7 41 215-255 124-173 (219)
385 PRK08265 short chain dehydroge 38.5 2.6E+02 0.0057 28.9 10.5 58 79-148 6-63 (261)
386 PRK06505 enoyl-(acyl carrier p 38.4 2.5E+02 0.0055 29.5 10.5 61 79-148 7-68 (271)
387 cd05281 TDH Threonine dehydrog 38.3 1E+02 0.0023 33.1 7.7 42 75-128 160-205 (341)
388 PRK06139 short chain dehydroge 37.8 2.9E+02 0.0064 30.2 11.2 61 79-148 7-67 (330)
389 cd08231 MDR_TM0436_like Hypoth 37.5 3E+02 0.0064 29.9 11.1 50 77-138 176-225 (361)
390 PRK06197 short chain dehydroge 37.4 3.4E+02 0.0074 28.8 11.4 64 78-149 15-79 (306)
391 PLN02178 cinnamyl-alcohol dehy 37.4 1.5E+02 0.0033 33.0 9.0 48 77-137 177-225 (375)
392 PF05050 Methyltransf_21: Meth 37.3 63 0.0014 30.5 5.2 40 84-130 1-42 (167)
393 cd00401 AdoHcyase S-adenosyl-L 37.1 1.4E+02 0.003 34.3 8.6 42 77-128 200-242 (413)
394 cd08261 Zn_ADH7 Alcohol dehydr 36.9 1.4E+02 0.0031 31.9 8.4 45 73-127 154-199 (337)
395 PRK00050 16S rRNA m(4)C1402 me 36.8 64 0.0014 35.3 5.7 69 215-300 216-284 (296)
396 COG4152 ABC-type uncharacteriz 36.7 61 0.0013 35.0 5.3 93 175-288 147-255 (300)
397 cd08270 MDR4 Medium chain dehy 36.4 3.1E+02 0.0067 28.5 10.8 50 76-137 130-179 (305)
398 cd08282 PFDH_like Pseudomonas 36.3 2.3E+02 0.0049 31.2 10.1 111 75-233 173-283 (375)
399 COG0677 WecC UDP-N-acetyl-D-ma 36.1 83 0.0018 36.0 6.5 123 88-253 16-145 (436)
400 PF03141 Methyltransf_29: Puta 36.1 49 0.0011 38.7 4.9 31 214-251 446-476 (506)
401 KOG3492 Ribosome biogenesis pr 35.6 1.2E+02 0.0026 30.3 6.6 121 502-645 10-135 (180)
402 PRK09242 tropinone reductase; 35.4 2.9E+02 0.0062 28.3 10.1 62 79-148 9-71 (257)
403 PRK07831 short chain dehydroge 35.1 4.4E+02 0.0096 27.0 11.6 65 77-148 15-80 (262)
404 PRK06603 enoyl-(acyl carrier p 35.1 2.9E+02 0.0063 28.7 10.2 36 79-121 8-44 (260)
405 PRK05786 fabG 3-ketoacyl-(acyl 35.0 3.5E+02 0.0076 27.1 10.5 60 79-148 5-64 (238)
406 PRK12826 3-ketoacyl-(acyl-carr 35.0 4.3E+02 0.0092 26.5 11.2 61 79-148 6-66 (251)
407 cd08265 Zn_ADH3 Alcohol dehydr 34.9 2.4E+02 0.0053 31.1 10.1 53 74-138 199-251 (384)
408 PRK07454 short chain dehydroge 34.9 2.6E+02 0.0057 28.2 9.7 61 79-148 6-66 (241)
409 PRK07666 fabG 3-ketoacyl-(acyl 34.3 4.3E+02 0.0094 26.5 11.1 61 79-148 7-67 (239)
410 PRK06172 short chain dehydroge 33.5 3.1E+02 0.0068 27.9 10.0 61 79-148 7-67 (253)
411 PRK06198 short chain dehydroge 33.3 4E+02 0.0086 27.2 10.8 61 79-148 6-67 (260)
412 cd05279 Zn_ADH1 Liver alcohol 32.8 2.6E+02 0.0057 30.6 9.9 52 74-137 179-230 (365)
413 PRK05650 short chain dehydroge 31.9 4.6E+02 0.01 27.1 11.1 59 81-148 2-60 (270)
414 PRK10083 putative oxidoreducta 31.8 3.1E+02 0.0068 29.2 10.1 53 74-137 156-208 (339)
415 PRK05876 short chain dehydroge 31.8 5E+02 0.011 27.2 11.4 61 79-148 6-66 (275)
416 PRK07677 short chain dehydroge 31.6 4.5E+02 0.0097 26.8 10.8 60 80-148 2-61 (252)
417 cd08284 FDH_like_2 Glutathione 30.7 2.8E+02 0.0061 29.6 9.5 47 74-128 163-209 (344)
418 PRK12384 sorbitol-6-phosphate 30.4 6E+02 0.013 25.9 11.6 61 80-148 3-64 (259)
419 TIGR02632 RhaD_aldol-ADH rhamn 30.3 3.7E+02 0.0081 32.7 11.3 62 79-148 414-476 (676)
420 COG0604 Qor NADPH:quinone redu 30.2 3.4E+02 0.0074 29.8 10.1 51 74-138 138-190 (326)
421 PRK07024 short chain dehydroge 30.1 3.1E+02 0.0068 28.1 9.4 58 81-148 4-61 (257)
422 PRK06196 oxidoreductase; Provi 30.0 3.4E+02 0.0073 29.0 9.9 57 79-148 26-82 (315)
423 PRK07984 enoyl-(acyl carrier p 30.0 4.3E+02 0.0093 27.6 10.5 35 79-120 6-41 (262)
424 cd08256 Zn_ADH2 Alcohol dehydr 29.7 3E+02 0.0064 29.7 9.5 51 74-136 170-220 (350)
425 PRK10754 quinone oxidoreductas 29.5 3.2E+02 0.0068 29.0 9.6 51 75-137 137-187 (327)
426 cd08286 FDH_like_ADH2 formalde 29.5 2.4E+02 0.0053 30.2 8.8 51 75-137 163-213 (345)
427 PRK06484 short chain dehydroge 29.4 3.6E+02 0.0077 31.0 10.6 132 78-236 268-401 (520)
428 COG5459 Predicted rRNA methyla 29.3 1.1E+02 0.0024 34.6 5.9 23 212-235 203-225 (484)
429 PRK07062 short chain dehydroge 29.3 4.4E+02 0.0096 27.0 10.4 62 79-148 8-70 (265)
430 PRK08063 enoyl-(acyl carrier p 29.1 5.7E+02 0.012 25.8 11.0 61 79-148 4-65 (250)
431 PRK07806 short chain dehydroge 29.1 4.9E+02 0.011 26.2 10.6 128 79-235 6-134 (248)
432 PRK07889 enoyl-(acyl carrier p 29.0 2.2E+02 0.0047 29.5 8.1 35 79-120 7-42 (256)
433 PRK12742 oxidoreductase; Provi 28.5 4.8E+02 0.01 26.1 10.3 41 79-127 6-47 (237)
434 PRK09186 flagellin modificatio 28.4 3.2E+02 0.0069 27.7 9.0 62 79-148 4-66 (256)
435 PRK08159 enoyl-(acyl carrier p 28.3 4E+02 0.0087 28.0 10.0 133 79-235 10-148 (272)
436 cd08243 quinone_oxidoreductase 28.2 3.5E+02 0.0076 28.1 9.5 52 75-138 139-190 (320)
437 PF02254 TrkA_N: TrkA-N domain 28.0 1.5E+02 0.0032 26.6 5.8 47 87-148 4-51 (116)
438 PRK07453 protochlorophyllide o 27.9 5E+02 0.011 27.8 10.8 61 79-148 6-66 (322)
439 cd05288 PGDH Prostaglandin deh 27.8 3.1E+02 0.0068 28.9 9.1 47 75-129 142-188 (329)
440 cd08296 CAD_like Cinnamyl alco 27.7 4.1E+02 0.0088 28.5 10.1 50 74-136 159-208 (333)
441 KOG3673 FtsJ-like RNA methyltr 27.6 20 0.00043 42.0 -0.1 18 82-99 271-288 (845)
442 COG0863 DNA modification methy 27.4 1.2E+02 0.0026 32.0 5.9 48 76-134 220-267 (302)
443 KOG1331 Predicted methyltransf 27.4 99 0.0022 33.8 5.1 100 76-234 43-143 (293)
444 PRK07060 short chain dehydroge 27.1 5.1E+02 0.011 26.0 10.2 43 78-128 8-50 (245)
445 PRK05854 short chain dehydroge 27.1 5.6E+02 0.012 27.5 11.0 63 79-149 14-77 (313)
446 PRK05855 short chain dehydroge 26.7 3.6E+02 0.0078 31.0 10.0 61 79-148 315-375 (582)
447 PRK12859 3-ketoacyl-(acyl-carr 26.7 6.9E+02 0.015 25.6 11.3 63 78-148 5-79 (256)
448 PRK06500 short chain dehydroge 26.7 4.1E+02 0.009 26.7 9.5 58 79-148 6-63 (249)
449 PF04672 Methyltransf_19: S-ad 26.6 2.5E+02 0.0054 30.5 7.9 120 80-238 70-193 (267)
450 PRK05866 short chain dehydroge 26.4 3.5E+02 0.0075 28.8 9.2 61 79-148 40-100 (293)
451 cd08297 CAD3 Cinnamyl alcohol 26.2 2.8E+02 0.0061 29.6 8.5 43 75-127 162-206 (341)
452 PRK08416 7-alpha-hydroxysteroi 26.1 5.8E+02 0.013 26.2 10.6 62 79-148 8-70 (260)
453 PRK06940 short chain dehydroge 25.6 6E+02 0.013 26.6 10.7 50 90-148 11-60 (275)
454 cd08245 CAD Cinnamyl alcohol d 25.5 6.9E+02 0.015 26.4 11.3 45 74-127 158-202 (330)
455 PRK07041 short chain dehydroge 25.4 4.5E+02 0.0097 26.2 9.4 54 86-148 3-56 (230)
456 PRK05396 tdh L-threonine 3-deh 25.1 2.4E+02 0.0052 30.3 7.7 48 77-137 162-210 (341)
457 PRK07097 gluconate 5-dehydroge 25.0 7.4E+02 0.016 25.4 11.2 61 79-148 10-70 (265)
458 cd08279 Zn_ADH_class_III Class 24.8 4.3E+02 0.0093 28.8 9.7 46 74-127 178-223 (363)
459 cd05286 QOR2 Quinone oxidoredu 24.8 5E+02 0.011 26.6 9.8 45 75-127 133-177 (320)
460 PRK07792 fabG 3-ketoacyl-(acyl 24.7 5.2E+02 0.011 27.6 10.2 61 79-148 12-73 (306)
461 PRK07109 short chain dehydroge 24.5 6.3E+02 0.014 27.5 10.9 61 79-148 8-68 (334)
462 PRK05872 short chain dehydroge 24.5 5.5E+02 0.012 27.2 10.3 46 78-131 8-53 (296)
463 cd08269 Zn_ADH9 Alcohol dehydr 24.5 4.5E+02 0.0097 27.4 9.5 52 73-137 124-176 (312)
464 PRK08251 short chain dehydroge 24.3 7.4E+02 0.016 24.9 11.3 61 80-148 3-64 (248)
465 PRK07814 short chain dehydroge 24.3 7.6E+02 0.016 25.4 11.1 62 78-148 9-70 (263)
466 PRK05875 short chain dehydroge 24.3 6.8E+02 0.015 25.8 10.7 62 79-148 7-69 (276)
467 PF13561 adh_short_C2: Enoyl-( 24.1 1.7E+02 0.0037 29.8 6.1 122 89-235 5-133 (241)
468 PRK07370 enoyl-(acyl carrier p 24.1 5E+02 0.011 26.9 9.7 24 79-102 6-30 (258)
469 cd08244 MDR_enoyl_red Possible 24.0 5.3E+02 0.011 27.0 10.0 46 74-127 138-183 (324)
470 KOG1197 Predicted quinone oxid 23.9 1.6E+02 0.0034 32.1 5.7 52 74-137 142-193 (336)
471 cd08291 ETR_like_1 2-enoyl thi 23.9 3.9E+02 0.0085 28.4 9.1 47 78-138 142-191 (324)
472 PRK08267 short chain dehydroge 23.8 7E+02 0.015 25.4 10.7 54 85-148 6-59 (260)
473 PF01488 Shikimate_DH: Shikima 23.7 5.7E+02 0.012 24.1 9.2 46 78-131 11-56 (135)
474 PRK08589 short chain dehydroge 23.7 6.7E+02 0.014 26.0 10.6 60 79-148 6-65 (272)
475 PRK08628 short chain dehydroge 23.6 6.3E+02 0.014 25.7 10.2 60 79-148 7-66 (258)
476 PRK09291 short chain dehydroge 23.5 7.7E+02 0.017 24.9 11.0 59 81-148 4-62 (257)
477 PRK05884 short chain dehydroge 23.4 3.5E+02 0.0075 27.4 8.2 38 86-130 6-43 (223)
478 KOG1562 Spermidine synthase [A 23.3 2.3E+02 0.005 31.4 6.9 108 79-232 122-233 (337)
479 PRK06077 fabG 3-ketoacyl-(acyl 23.3 7.7E+02 0.017 24.8 11.1 135 79-237 6-142 (252)
480 PRK05717 oxidoreductase; Valid 23.2 5.1E+02 0.011 26.4 9.5 58 79-148 10-67 (255)
481 cd08240 6_hydroxyhexanoate_dh_ 23.2 5.5E+02 0.012 27.6 10.1 43 77-127 174-216 (350)
482 PRK07530 3-hydroxybutyryl-CoA 23.0 7.4E+02 0.016 26.4 10.9 37 88-131 11-47 (292)
483 PLN02989 cinnamyl-alcohol dehy 22.9 5.1E+02 0.011 27.6 9.7 62 79-148 5-67 (325)
484 TIGR00692 tdh L-threonine 3-de 22.4 4.6E+02 0.01 28.1 9.3 46 75-128 158-203 (340)
485 PRK12744 short chain dehydroge 22.3 5.1E+02 0.011 26.5 9.2 136 79-238 8-148 (257)
486 PRK07985 oxidoreductase; Provi 22.2 6E+02 0.013 27.0 10.0 62 78-148 48-111 (294)
487 cd08287 FDH_like_ADH3 formalde 22.2 5.6E+02 0.012 27.4 9.9 51 74-136 164-214 (345)
488 PRK06101 short chain dehydroge 22.1 6.5E+02 0.014 25.5 9.9 52 85-148 6-57 (240)
489 KOG2651 rRNA adenine N-6-methy 21.9 1.1E+02 0.0024 34.8 4.3 39 74-122 149-187 (476)
490 cd05284 arabinose_DH_like D-ar 21.9 3.4E+02 0.0074 28.9 8.1 50 75-136 164-213 (340)
491 PRK09422 ethanol-active dehydr 21.7 4.9E+02 0.011 27.7 9.3 52 74-137 158-209 (338)
492 cd08274 MDR9 Medium chain dehy 21.5 6.1E+02 0.013 27.0 10.0 50 74-136 173-222 (350)
493 PRK06138 short chain dehydroge 21.3 7.9E+02 0.017 24.7 10.3 60 80-149 6-65 (252)
494 PRK05653 fabG 3-ketoacyl-(acyl 21.2 6.5E+02 0.014 25.0 9.6 61 79-148 5-65 (246)
495 PRK09260 3-hydroxybutyryl-CoA 21.0 4.3E+02 0.0092 28.2 8.6 38 88-132 8-45 (288)
496 PRK12481 2-deoxy-D-gluconate 3 20.9 9.1E+02 0.02 24.7 11.3 60 78-148 7-66 (251)
497 PRK12743 oxidoreductase; Provi 20.6 5E+02 0.011 26.5 8.8 60 80-148 3-63 (256)
498 KOG3201 Uncharacterized conser 20.4 1.3E+02 0.0027 30.7 3.9 71 56-134 4-77 (201)
499 PLN00015 protochlorophyllide r 20.1 6.6E+02 0.014 26.8 9.9 56 86-148 3-58 (308)
No 1
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-68 Score=566.60 Aligned_cols=283 Identities=54% Similarity=0.876 Sum_probs=265.0
Q ss_pred CCcccchhhcccccCCCccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhhcCCCCCC
Q 004763 1 MKSLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDH 80 (732)
Q Consensus 1 ~~~l~~~~~eg~~~~~~~~~pw~p~~la~~~~~~~~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~ 80 (732)
++++.+.++||++++.+..+||||++++|+.++.+..+|+++.+.+||.|++.++++|+|++||++||+|+++|+++|||
T Consensus 78 ~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~ 157 (375)
T KOG2198|consen 78 FESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGD 157 (375)
T ss_pred chhhhhhhccccccCccccCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCC
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
+||||||||||||+||++.+|...+ .|.|+|||++.+|+++|+|+++|+..+++.|++|++..||++.+.+.
T Consensus 158 ~VLDmCAAPG~Kt~qLLeal~~~~~-----~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~--- 229 (375)
T KOG2198|consen 158 KVLDMCAAPGGKTAQLLEALHKDPT-----RGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG--- 229 (375)
T ss_pred eeeeeccCCCccHHHHHHHHhcCCC-----CCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC---
Confidence 9999999999999999999996422 58999999999999999999999999999999999999998754311
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhh-cccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCC
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK-WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~-ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSln 239 (732)
.+.....|||||||||||||||+|+++++|+. |+...+.+||.+|.+||++|+++||+||+|||||||+|
T Consensus 230 ---------~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 ---------NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred ---------chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 12345899999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCC-ccccchhhhhhhhcc
Q 004763 240 PVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKG-IWLASHKHVRKFRRI 300 (732)
Q Consensus 240 p~ENEaVV~~~L~~~~~~velvd~s~~lP~L~~~pGl~~W~v~~~~-~~~~~~~~~~~~~~~ 300 (732)
|+|||+||+++|+++++++++++++..+|.|+|.+|.+.|++.+++ .|+.++.++|.....
T Consensus 301 pieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~r~~g~t~~~~~~~~~~~~~~~~~vp~~~~~ 362 (375)
T KOG2198|consen 301 PIENEAVVQEALQKVGGAVELVDVSGDLPGLKRMFGSTGWKVHDKVLKWFTSPLEVPKLVAN 362 (375)
T ss_pred chhhHHHHHHHHHHhcCcccceeeccccccceecCCCCcceEEecCcccccCccccccchhh
Confidence 9999999999999999999999999999999999999999999976 489999999976654
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=2e-52 Score=468.69 Aligned_cols=379 Identities=24% Similarity=0.379 Sum_probs=276.7
Q ss_pred CCccccCCCCCccccccc-chhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhhc--CCCCCCEEEeecCCCChH
Q 004763 16 PIRPLPWYPNNLAWHSNF-SRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFL--DVQPDHFVLDMCAAPGSK 92 (732)
Q Consensus 16 ~~~~~pw~p~~la~~~~~-~~~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llL--d~~pg~~VLDmCAAPGsK 92 (732)
..+++||+|+++.+.... .+..+... ..| ..|.|++||++||+|+.+| +++||++|||||||||||
T Consensus 59 ~~~~~p~~~~g~~~~~~~~~~~~~~~~------~~~-----~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgK 127 (470)
T PRK11933 59 TLTPIPWCEEGFWIERDDEDALPLGNT------AEH-----LSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSK 127 (470)
T ss_pred ceeECCCCCceEEEecCccccCCcccC------hHH-----HCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHH
Confidence 356899999976432110 00012222 222 4699999999999999999 999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCcccccccccc
Q 004763 93 TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 172 (732)
Q Consensus 93 T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
|+|||++|++ .|.|+|||++.+|+..|.+|++|+|+.|+.+++.|+..+...
T Consensus 128 Tt~la~~l~~--------~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-------------------- 179 (470)
T PRK11933 128 TTQIAALMNN--------QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-------------------- 179 (470)
T ss_pred HHHHHHHcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--------------------
Confidence 9999999875 689999999999999999999999999999999998865321
Q ss_pred ccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHH
Q 004763 173 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 252 (732)
Q Consensus 173 ~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~ 252 (732)
....||+||+||||||.|++||+|++++.|++.....++.+|++||.+|+++|||||+|||||||++|+|||+||+++|+
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~ 259 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE 259 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 12569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCcEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCc
Q 004763 253 KCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSD 332 (732)
Q Consensus 253 ~~~~~velvd~s~~lP~L~~~pGl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~ 332 (732)
++++.++++++... |... +.
T Consensus 260 ~~~~~~~~~~~~~~------------~~~~-------------------------~~----------------------- 279 (470)
T PRK11933 260 TYPDAVEFEPLGDL------------FPGA-------------------------EK----------------------- 279 (470)
T ss_pred HCCCcEEecccccc------------cccc-------------------------cc-----------------------
Confidence 98765655543211 1100 00
Q ss_pred cccchhhcccccCCchhhhhccccCCceEEEcccCCCCCceEEEEEEEcCCCCccccccCCcccccCCCCCCCCccccCC
Q 004763 333 EGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQ 412 (732)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~l~rc~R~~Ph~q~TgGFFvAvl~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (732)
......|+|++||..+|+|||||+|+|......... ..
T Consensus 280 ---------------------~~~~~~~~r~~P~~~~~dGfFiA~lrk~~~~~~~~~-----~~---------------- 317 (470)
T PRK11933 280 ---------------------ALTEEGFLHVFPQIYDSEGFFVARLRKTASVPRLPA-----PK---------------- 317 (470)
T ss_pred ---------------------ccCCCCeEEECCCCCCCcceeeEEEEecCCcccccc-----cc----------------
Confidence 001347999999999999999999999754211000 00
Q ss_pred cccccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccccccCCccc
Q 004763 413 DTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKG 492 (732)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 492 (732)
...+|
T Consensus 318 ----------------------------------------------------------------~~~~k----------- 322 (470)
T PRK11933 318 ----------------------------------------------------------------YKVGK----------- 322 (470)
T ss_pred ----------------------------------------------------------------ccccc-----------
Confidence 00000
Q ss_pred CCCcccCC--ChhhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceEeeEEE
Q 004763 493 IDPVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFER 570 (732)
Q Consensus 493 ~dP~~f~~--d~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~~s~~v~~il~~n~~~g~~lkii~~GvK~F~r 570 (732)
.|+.-.. ..+.|....+-|+++. +....++.++ ..||++-...... . .+|||+..|+.+=+-
T Consensus 323 -~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~------~~l~~~p~~~~~~----~---~~l~v~r~Gl~lg~~ 386 (470)
T PRK11933 323 -FPFTPAKDKEAQEIRQAAASVGLSW--PENLRLWQRD------KEVWLFPAGIEPL----I---GKVRFSRIGIKLAET 386 (470)
T ss_pred -ccccccchhHHHHHHHHHHhcCCCC--CCCCcEEEEC------CEEEEeccccchh----h---cCCeEeeeceeEeee
Confidence 0000000 1123444444456653 2223454443 4699888764221 1 479999999999765
Q ss_pred ecCCCCCCcccceeeccCchhhhhhcccCcEEecCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEe
Q 004763 571 QTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 645 (732)
Q Consensus 571 q~~~~~~~~~c~~Ri~~eGl~~l~p~~~~r~v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l~~G~~vl~~~ 645 (732)
.. =+|..++.....+.+.-..+.+.++.++....|..+.+... +. ..-|-++|.++
T Consensus 387 kk--------~rfePs~ala~~l~~~~~~~~~~l~~~~~~~Yl~ge~l~~~---~~--------~~~G~~lv~~~ 442 (470)
T PRK11933 387 HK--------KGYRWQHEAVIALASPDNANAFELTPQEAEEWYMGRDIYPQ---TA--------PPAGEVIVTYQ 442 (470)
T ss_pred ec--------CCeeEcHHHHHHhCcccccceEecCHHHHHHHHCCCCccCC---CC--------CCCCEEEEEEC
Confidence 42 27888888887777766678999999999999987666543 11 12477777665
No 3
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-52 Score=457.09 Aligned_cols=182 Identities=40% Similarity=0.602 Sum_probs=166.7
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
..|.|++||.+||+|+++|+++||++||||||||||||+|||++|.+. ++.|+|+|++.+|+.+|++|++|+|
T Consensus 134 ~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~-------~~iV~A~D~~~~Rl~~l~~nl~RlG 206 (355)
T COG0144 134 AEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENE-------GAIVVAVDVSPKRLKRLRENLKRLG 206 (355)
T ss_pred hceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCC-------CceEEEEcCCHHHHHHHHHHHHHcC
Confidence 569999999999999999999999999999999999999999998752 4567999999999999999999999
Q ss_pred CCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004763 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (732)
Q Consensus 136 ~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~ 215 (732)
+.|+.++++|+..++... ....+||+||+|+||||+|++||+|++|+.|++.+...++.+|.
T Consensus 207 ~~nv~~~~~d~~~~~~~~------------------~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~ 268 (355)
T COG0144 207 VRNVIVVNKDARRLAELL------------------PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQK 268 (355)
T ss_pred CCceEEEecccccccccc------------------cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHH
Confidence 999999999998876532 11136999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004763 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd~ 263 (732)
+||.+|+++|||||+|||||||++|+|||+||.++|++++ .++++++
T Consensus 269 ~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~-~~~~~~~ 315 (355)
T COG0144 269 EILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP-DFELEPV 315 (355)
T ss_pred HHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC-Cceeecc
Confidence 9999999999999999999999999999999999999985 4566553
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=2.2e-49 Score=419.94 Aligned_cols=181 Identities=42% Similarity=0.611 Sum_probs=163.7
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
+.|.|+.||.+||+++++|+++||+.||||||||||||++|+++|.+ .|.|+|+|++.+|+..|..+++|+|
T Consensus 63 ~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~--------~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 63 KNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGN--------KGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp HTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTT--------TSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred hCCcEEecccccccccccccccccccccccccCCCCceeeeeecccc--------hhHHHHhccCHHHHHHHHHHHHhcC
Confidence 45999999999999999999999999999999999999999999864 6999999999999999999999999
Q ss_pred CCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004763 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (732)
Q Consensus 136 ~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~ 215 (732)
..++.+++.|+..+.. ......||+||+|+||||.|+++++|++.+.|++.+...++.+|.
T Consensus 135 ~~~v~~~~~D~~~~~~-------------------~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~ 195 (283)
T PF01189_consen 135 VFNVIVINADARKLDP-------------------KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQR 195 (283)
T ss_dssp -SSEEEEESHHHHHHH-------------------HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHH
T ss_pred CceEEEEeeccccccc-------------------cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHH
Confidence 9999999888876421 011236999999999999999999999988899999999999999
Q ss_pred HHHHHHHhhc----cCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004763 216 QIAMRGISLL----KVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (732)
Q Consensus 216 ~IL~rAl~lL----KpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd~s 264 (732)
+||++|++++ ||||+|||||||++|+|||+||..+|++++ .++++++.
T Consensus 196 ~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~-~~~l~~~~ 247 (283)
T PF01189_consen 196 EILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP-DFELVPIP 247 (283)
T ss_dssp HHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST-SEEEECCE
T ss_pred HHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC-CcEEEecc
Confidence 9999999999 999999999999999999999999999985 67887653
No 5
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=3e-47 Score=409.23 Aligned_cols=193 Identities=36% Similarity=0.546 Sum_probs=173.0
Q ss_pred hHHHHHHHhhcccccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHH
Q 004763 43 TLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ 122 (732)
Q Consensus 43 ~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~ 122 (732)
.+.++++|| .|.+..|.++|++|+++|+||||++||||||||||||++||.+|++ +|.|+|||.+..
T Consensus 211 pigat~e~l-----ag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn--------~G~I~AnD~n~~ 277 (460)
T KOG1122|consen 211 PIGATPEYL-----AGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKN--------TGVIFANDSNEN 277 (460)
T ss_pred ccCCchhhc-----ccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcC--------CceEEecccchH
Confidence 345666664 4999999999999999999999999999999999999999999987 799999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhc
Q 004763 123 RCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKW 202 (732)
Q Consensus 123 Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~w 202 (732)
|+..+..|+.|+|+.|.+++++|+..||.-. +. ..|||||+|+||||.|++.|.+.+...-
T Consensus 278 r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~------------------~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k 338 (460)
T KOG1122|consen 278 RLKSLKANLHRLGVTNTIVSNYDGREFPEKE------------------FP-GSFDRVLLDAPCSGTGVISKDQSVKTNK 338 (460)
T ss_pred HHHHHHHHHHHhCCCceEEEccCcccccccc------------------cC-cccceeeecCCCCCCcccccccccccch
Confidence 9999999999999999999999999987421 12 3799999999999999999998873333
Q ss_pred ccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004763 203 NVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (732)
Q Consensus 203 s~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd~s~~lP 268 (732)
+..+...++.+|+++|..|++++++||+|||||||+.++|||+||+++|++++ .++|+++...++
T Consensus 339 ~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p-~~kL~p~~~~iG 403 (460)
T KOG1122|consen 339 TVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP-EVKLVPTGLDIG 403 (460)
T ss_pred hHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCC-ceEeccccccCC
Confidence 46778889999999999999999999999999999999999999999999986 689998865554
No 6
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=8.9e-45 Score=381.01 Aligned_cols=172 Identities=40% Similarity=0.613 Sum_probs=159.9
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
..|.+++||.+||+++.+|+++||++|||+|||||+||++|++.+++ .|.|+|+|+++.|+..+++|++++|
T Consensus 49 ~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~--------~g~v~a~D~~~~~l~~~~~n~~~~g 120 (264)
T TIGR00446 49 LSGLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKN--------EGAIVANEFSKSRTKVLIANINRCG 120 (264)
T ss_pred hCCeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCC--------CCEEEEEcCCHHHHHHHHHHHHHcC
Confidence 45999999999999999999999999999999999999999998754 5899999999999999999999999
Q ss_pred CCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004763 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (732)
Q Consensus 136 ~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~ 215 (732)
..++.+++.|+..++.. ...||+||+||||||.|+++++|++++.|++.....++.+|.
T Consensus 121 ~~~v~~~~~D~~~~~~~---------------------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 179 (264)
T TIGR00446 121 VLNVAVTNFDGRVFGAA---------------------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQK 179 (264)
T ss_pred CCcEEEecCCHHHhhhh---------------------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHH
Confidence 98999999998765321 145999999999999999999999988999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCC
Q 004763 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (732)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~ 256 (732)
+||.+|+++|||||+|||||||++++|||+||+++|+++++
T Consensus 180 ~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 180 ELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPD 220 (264)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998864
No 7
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.2e-41 Score=380.12 Aligned_cols=179 Identities=31% Similarity=0.537 Sum_probs=164.1
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
+.|.++.||.+||+++.+|++++|++|||||||||+||+++++.+++ .|.|+|+|++++|+..+++|++|+|
T Consensus 215 ~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~--------~g~V~a~Dis~~rl~~~~~n~~r~g 286 (431)
T PRK14903 215 KDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKD--------QGKILAVDISREKIQLVEKHAKRLK 286 (431)
T ss_pred HCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCC--------CCEEEEEECCHHHHHHHHHHHHHcC
Confidence 56999999999999999999999999999999999999999998754 6899999999999999999999999
Q ss_pred CCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004763 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (732)
Q Consensus 136 ~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~ 215 (732)
..++.++..|+..++.. ....||+|||||||||.|+++++|++++.|++.....+..+|.
T Consensus 287 ~~~v~~~~~Da~~l~~~--------------------~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~ 346 (431)
T PRK14903 287 LSSIEIKIADAERLTEY--------------------VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQL 346 (431)
T ss_pred CCeEEEEECchhhhhhh--------------------hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHH
Confidence 98888999998775421 1256999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004763 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd~ 263 (732)
+||.+|+++|||||+|||||||++|+|||+||.++|++++ .++++++
T Consensus 347 ~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~-~~~~~~~ 393 (431)
T PRK14903 347 RIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DAEVIDI 393 (431)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC-CcEEecc
Confidence 9999999999999999999999999999999999999876 4566554
No 8
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.5e-40 Score=368.66 Aligned_cols=201 Identities=30% Similarity=0.485 Sum_probs=172.5
Q ss_pred CccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHH
Q 004763 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (732)
Q Consensus 17 ~~~~pw~p~~la~~~~~~~~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (732)
.++.||.|+++.+.. .+..+ .....| ..|.++.||.+|++++.+|++++|++|||+|||||+||++|
T Consensus 204 ~~~~~~~~~~~~~~~--~~~~~------~~~~~f-----~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~l 270 (434)
T PRK14901 204 ATPIPGLPQGLRLTG--NPGSI------RQLPGY-----EEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHI 270 (434)
T ss_pred eEECCCCCCeEEecC--CCCcc------ccChHH-----hCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHH
Confidence 467889999765431 11112 222333 45999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCcccccccccccccc
Q 004763 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (732)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
++.+.+ .|.|+|+|++..|+..+++|++++|..++.+++.|+..++... ......
T Consensus 271 a~~~~~--------~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----------------~~~~~~ 325 (434)
T PRK14901 271 AELMGD--------QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK-----------------PQWRGY 325 (434)
T ss_pred HHHhCC--------CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc-----------------cccccc
Confidence 998753 5899999999999999999999999999999999988754210 011257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
||+||+||||||.|+++++|++.+.|++.....+..+|.+||.+|+++|||||+|||||||++|+|||+||.++|++++
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 9999999999999999999999778889999999999999999999999999999999999999999999999999764
No 9
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=1.4e-39 Score=363.09 Aligned_cols=171 Identities=32% Similarity=0.454 Sum_probs=152.2
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
+.|.++.||.+||+++.+|++++|++|||||||||+||+++++.++ .|.|+|+|++++|+..+++|++++|
T Consensus 216 ~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~---------~~~v~a~D~~~~~l~~~~~n~~r~g 286 (426)
T TIGR00563 216 EEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP---------QAQVVALDIHEHRLKRVYENLKRLG 286 (426)
T ss_pred hCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 5699999999999999999999999999999999999999999863 4899999999999999999999999
Q ss_pred CCceEEE--ecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004763 136 TANLIVT--NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (732)
Q Consensus 136 ~~ni~Vt--~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~l 213 (732)
.. +.++ ..|+...+.. .....||+||+||||||.|++|++|++.+.|++.+...+..+
T Consensus 287 ~~-~~v~~~~~d~~~~~~~-------------------~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~l 346 (426)
T TIGR00563 287 LT-IKAETKDGDGRGPSQW-------------------AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAEL 346 (426)
T ss_pred CC-eEEEEecccccccccc-------------------ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHH
Confidence 87 4553 3443322110 112579999999999999999999999888899999999999
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
|.+||.+|+++|||||+|||||||++|+|||+||..+|++++
T Consensus 347 Q~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 347 QSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999875
No 10
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.6e-38 Score=352.49 Aligned_cols=204 Identities=31% Similarity=0.467 Sum_probs=173.7
Q ss_pred CCccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHH
Q 004763 16 PIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQ 95 (732)
Q Consensus 16 ~~~~~pw~p~~la~~~~~~~~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~q 95 (732)
..++.||+|+++.+. ...+...+ .| ..|.++.||.+|++++.+|++++|++|||+|||||+||++
T Consensus 203 ~~~~~~~~~~~~~~~----~~~~~~~~------~~-----~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~ 267 (444)
T PRK14902 203 EVEESLLSPEALVIE----KGNIAGTD------LF-----KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTH 267 (444)
T ss_pred eeEEcCCCCCeEEEe----CCCcccCh------HH-----hCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHH
Confidence 357789999976432 12232222 22 3599999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCccccccccccccc
Q 004763 96 LLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL 175 (732)
Q Consensus 96 Lae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
+++.++. .|.|+|+|+++.|+..+++|++++|..++.++++|+..++.. . ..
T Consensus 268 la~~~~~--------~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-------------------~-~~ 319 (444)
T PRK14902 268 IAELLKN--------TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK-------------------F-AE 319 (444)
T ss_pred HHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch-------------------h-cc
Confidence 9998743 589999999999999999999999998899999998764310 1 15
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 176 ~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
.||+|++|+||||.|+++++|++.+.|++.....+..+|.+||..|+++|||||+|||||||++++|||+||.++|++++
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 69999999999999999999998767788888889999999999999999999999999999999999999999999864
Q ss_pred CcEEEEec
Q 004763 256 GSVELVDV 263 (732)
Q Consensus 256 ~~velvd~ 263 (732)
.++++++
T Consensus 400 -~~~~~~~ 406 (444)
T PRK14902 400 -EFELVPL 406 (444)
T ss_pred -CcEEecc
Confidence 4666554
No 11
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.8e-38 Score=352.56 Aligned_cols=176 Identities=28% Similarity=0.455 Sum_probs=160.7
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
..|.++.|+.+|++++.+|++++|++|||+|||||+||.++++.+.. .|.|+|+|+++.|+..++++++++|
T Consensus 228 ~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~--------~~~V~avD~s~~~l~~~~~~~~~~g 299 (445)
T PRK14904 228 KLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQN--------RGQITAVDRYPQKLEKIRSHASALG 299 (445)
T ss_pred hCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCC--------CcEEEEEECCHHHHHHHHHHHHHhC
Confidence 56999999999999999999999999999999999999999998753 5899999999999999999999999
Q ss_pred CCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004763 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (732)
Q Consensus 136 ~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~ 215 (732)
..++.+.++|+..++. ...||+|++||||||.|+++++|++.+.|++.....+..+|.
T Consensus 300 ~~~v~~~~~Da~~~~~----------------------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~ 357 (445)
T PRK14904 300 ITIIETIEGDARSFSP----------------------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQA 357 (445)
T ss_pred CCeEEEEeCccccccc----------------------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHH
Confidence 9888999998876431 156999999999999999999999987888888888999999
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004763 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (732)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd 262 (732)
+||.+|.++|||||+|||||||++|+|||+||..+|++++ .+++++
T Consensus 358 ~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~-~~~~~~ 403 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP-EFSAEP 403 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC-CCEEec
Confidence 9999999999999999999999999999999999999875 355444
No 12
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.1e-36 Score=339.78 Aligned_cols=197 Identities=30% Similarity=0.431 Sum_probs=165.2
Q ss_pred CCccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHH
Q 004763 16 PIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQ 95 (732)
Q Consensus 16 ~~~~~pw~p~~la~~~~~~~~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~q 95 (732)
..++.||.|+++.+.. ...+ .....| +.|.++.||.+|++++.+|++++|++|||+|||||+||++
T Consensus 196 ~~~~~~~~~~~~~~~~---~~~~------~~~~~~-----~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~ 261 (427)
T PRK10901 196 EAFPHAVGPDAIRLET---PVPV------HQLPGF-----AEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAH 261 (427)
T ss_pred ceeecCCCCCeEEECC---CCCc------ccCchh-----hCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHH
Confidence 3467889999765421 1112 222222 4699999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCccccccccccccc
Q 004763 96 LLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL 175 (732)
Q Consensus 96 Lae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
+++.+. .+.|+|+|+++.|+..+++|++++|.. +.+.++|+..++.. ....
T Consensus 262 la~~~~---------~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-------------------~~~~ 312 (427)
T PRK10901 262 ILELAP---------QAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-------------------WDGQ 312 (427)
T ss_pred HHHHcC---------CCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-------------------cccC
Confidence 998752 379999999999999999999999875 57888888764321 1125
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 176 ~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
.||+|++||||||.|+++++|++.+.+++.+...+..+|.++|.+|.++|||||+|||||||+++.|||+||..+|++++
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 69999999999999999999998555677777888999999999999999999999999999999999999999999865
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-29 Score=271.59 Aligned_cols=178 Identities=28% Similarity=0.378 Sum_probs=147.5
Q ss_pred cccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004763 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (732)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl 134 (732)
++.|.+..||.+|++|+.+|++.+|..|+|+|||||.||+|+|..+.+ .|.++|+|.+.+|.+.+..+++..
T Consensus 190 y~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n--------~gki~afe~d~~r~~tl~~~l~~a 261 (413)
T KOG2360|consen 190 YKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRN--------QGKIYAFERDAKRAATLRKLLKIA 261 (413)
T ss_pred cccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhc--------cCCcchhhhhhHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999999999999875 699999999999999999999999
Q ss_pred CCCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhh--hhcccccccchHH
Q 004763 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW--RKWNVGLGNGLHS 212 (732)
Q Consensus 135 g~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w--~~ws~~~~~~L~~ 212 (732)
|..++....+|+...+. ......+..||+||+|||+|+..+.-.+- ..-.+.....|..
T Consensus 262 g~~~~~~~~~df~~t~~-------------------~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~ 322 (413)
T KOG2360|consen 262 GVSIVESVEGDFLNTAT-------------------PEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQS 322 (413)
T ss_pred CCCccccccccccCCCC-------------------cccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHH
Confidence 99888777777655311 12235678999999999999864322211 1112344567888
Q ss_pred HHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEE
Q 004763 213 LQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVEL 260 (732)
Q Consensus 213 lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~vel 260 (732)
+|.+++.+|+.+-+. -+|||||||++.+|||.||+.+|...+...++
T Consensus 323 fq~~~~~hal~fp~~-k~vvystcs~~reene~vv~d~l~~~p~~~~l 369 (413)
T KOG2360|consen 323 FQIRILKHALTFPNL-KRLVYSTCSLHREENEQVVQEVLQQNPDAKRL 369 (413)
T ss_pred HHHHHHHHHhcCCch-hheeeecchhhhhhhhHHHHHHHhhChhHhhh
Confidence 999999999997666 89999999999999999999999987544444
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.56 E-value=4.9e-14 Score=140.30 Aligned_cols=144 Identities=26% Similarity=0.311 Sum_probs=117.6
Q ss_pred cccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecc
Q 004763 66 VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHE 145 (732)
Q Consensus 66 ~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~D 145 (732)
...+..-.|.++||+++||++||+|+.|.+++ .++ |.|+|||+|.+++|+.++.+|+.++|.+|+.++.++
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~--------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~ 92 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAG--------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD 92 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhC--------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 33444557899999999999999999999998 544 579999999999999999999999999999999999
Q ss_pred cccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004763 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (732)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lL 225 (732)
|..+.. ....||+|++ .|.|. ...||..++..|
T Consensus 93 Ap~~L~---------------------~~~~~daiFI----GGg~~----------------------i~~ile~~~~~l 125 (187)
T COG2242 93 APEALP---------------------DLPSPDAIFI----GGGGN----------------------IEEILEAAWERL 125 (187)
T ss_pred chHhhc---------------------CCCCCCEEEE----CCCCC----------------------HHHHHHHHHHHc
Confidence 977421 0136999998 33332 246899999999
Q ss_pred cCCCEEEEEcCCCCCcCcHHHHHHHHHHCCC-cEEEEecCccCC
Q 004763 226 KVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDVSNEVP 268 (732)
Q Consensus 226 KpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~-~velvd~s~~lP 268 (732)
|+||+||...-++ ||++...+.+++.++ ++.-+.++...+
T Consensus 126 ~~ggrlV~naitl---E~~~~a~~~~~~~g~~ei~~v~is~~~~ 166 (187)
T COG2242 126 KPGGRLVANAITL---ETLAKALEALEQLGGREIVQVQISRGKP 166 (187)
T ss_pred CcCCeEEEEeecH---HHHHHHHHHHHHcCCceEEEEEeeccee
Confidence 9999999988777 999999999999988 455555554333
No 15
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.52 E-value=7.2e-14 Score=155.30 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=123.3
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
++|.+..|.........+ .+|.+|||+|||+|+.++.++. + +...|+++|+++..+..+++|++.++
T Consensus 201 ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~--~--------ga~~V~~VD~s~~al~~a~~N~~~Ng 267 (396)
T PRK15128 201 KTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALM--G--------GCSQVVSVDTSQEALDIARQNVELNK 267 (396)
T ss_pred ccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHh--C--------CCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 678998887766554433 4589999999999998876542 2 24689999999999999999999998
Q ss_pred CC--ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004763 136 TA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (732)
Q Consensus 136 ~~--ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~l 213 (732)
.. ++.+..+|+..+..- .......||.|++|||+-.... ..+ ......
T Consensus 268 l~~~~v~~i~~D~~~~l~~-----------------~~~~~~~fDlVilDPP~f~~~k----~~l---------~~~~~~ 317 (396)
T PRK15128 268 LDLSKAEFVRDDVFKLLRT-----------------YRDRGEKFDVIVMDPPKFVENK----SQL---------MGACRG 317 (396)
T ss_pred CCCCcEEEEEccHHHHHHH-----------------HHhcCCCCCEEEECCCCCCCCh----HHH---------HHHHHH
Confidence 74 688889988764210 0011257999999999744221 011 112234
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCC--CCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004763 214 QVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVDVS 264 (732)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCS--lnp~ENEaVV~~~L~~~~~~velvd~s 264 (732)
...++..|+++|++||.|+++||| +...+-..+|.++..+.+..++++...
T Consensus 318 y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~ 370 (396)
T PRK15128 318 YKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF 370 (396)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 567889999999999999999999 555556688888888888888888764
No 16
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.43 E-value=8.2e-13 Score=145.94 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=128.2
Q ss_pred ccccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004763 54 ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (732)
Q Consensus 54 ~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR 133 (732)
..++|.+..|..+.....-.+. |.+|||+||.+|+.|.++|.. +...|+++|+|...+..+++|++-
T Consensus 196 g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~g----------GA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 196 GLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALG----------GASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred cccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhc----------CCCceEEEeccHHHHHHHHHHHHh
Confidence 3478999999988776655543 999999999999999998653 245899999999999999999998
Q ss_pred cCCC--ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004763 134 MCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (732)
Q Consensus 134 lg~~--ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~ 211 (732)
+|.. .+.++.+|+..|..- ......+||+|++||| ++.+++. ......
T Consensus 263 Ng~~~~~~~~i~~Dvf~~l~~-----------------~~~~g~~fDlIilDPP-----sF~r~k~--------~~~~~~ 312 (393)
T COG1092 263 NGLDGDRHRFIVGDVFKWLRK-----------------AERRGEKFDLIILDPP-----SFARSKK--------QEFSAQ 312 (393)
T ss_pred cCCCccceeeehhhHHHHHHH-----------------HHhcCCcccEEEECCc-----ccccCcc--------cchhHH
Confidence 8864 477888998775321 1223368999999999 2222222 223445
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcH--HHHHHHHHHCCCcEEEEec
Q 004763 212 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE--AVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENE--aVV~~~L~~~~~~velvd~ 263 (732)
.-..+|+..|+++|+|||+++.||||-+-..++ ..|..++...+..++++..
T Consensus 313 rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~ 366 (393)
T COG1092 313 RDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEG 366 (393)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeec
Confidence 667899999999999999999999997766664 6667777766667777664
No 17
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.38 E-value=6.2e-12 Score=126.79 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=112.3
Q ss_pred cEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CC
Q 004763 59 NITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TA 137 (732)
Q Consensus 59 ~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ 137 (732)
.++.++. ..+....+++.++++|||+|||+|..+.+++..+. +.+.|+|+|+++.+++.+++++++++ ..
T Consensus 22 ~~t~~~~-r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~--------~~~~v~avD~~~~~~~~a~~n~~~~g~~~ 92 (198)
T PRK00377 22 PMTKEEI-RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVG--------ETGKVYAVDKDEKAINLTRRNAEKFGVLN 92 (198)
T ss_pred CCCHHHH-HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 3444433 33333457899999999999999999999988764 25799999999999999999999998 46
Q ss_pred ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH
Q 004763 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI 217 (732)
Q Consensus 138 ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~I 217 (732)
++.+.+.|+..+.. .....||+|++... .. ....+
T Consensus 93 ~v~~~~~d~~~~l~--------------------~~~~~~D~V~~~~~---~~----------------------~~~~~ 127 (198)
T PRK00377 93 NIVLIKGEAPEILF--------------------TINEKFDRIFIGGG---SE----------------------KLKEI 127 (198)
T ss_pred CeEEEEechhhhHh--------------------hcCCCCCEEEECCC---cc----------------------cHHHH
Confidence 78888887765321 01146999998421 00 12457
Q ss_pred HHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004763 218 AMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (732)
Q Consensus 218 L~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd~s 264 (732)
+..+.++|||||++|+.+|++ ++..-+..+|++.+..++++++.
T Consensus 128 l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 128 ISASWEIIKKGGRIVIDAILL---ETVNNALSALENIGFNLEITEVI 171 (198)
T ss_pred HHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHHHcCCCeEEEEEe
Confidence 889999999999999999977 67778888888877667776654
No 18
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.35 E-value=2e-11 Score=120.90 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=111.5
Q ss_pred cchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004763 68 MVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (732)
Q Consensus 68 mlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~ 147 (732)
++....++..++.+|||+|||+|..+..++.. ...|+++|+++..++.++++++..+. ++.+...|..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~ 76 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGK-----------GKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLF 76 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccc
Confidence 33334455667789999999999999888764 12799999999999999999987775 5667777654
Q ss_pred cCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004763 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (732)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKp 227 (732)
.++ ...||.|++++|+-....-.+ .+-|..+....+......+.++|.++.++|||
T Consensus 77 ~~~-----------------------~~~fD~Vi~n~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~ 132 (179)
T TIGR00537 77 KGV-----------------------RGKFDVILFNPPYLPLEDDLR-RGDWLDVAIDGGKDGRKVIDRFLDELPEILKE 132 (179)
T ss_pred ccc-----------------------CCcccEEEECCCCCCCcchhc-ccchhhhhhhcCCchHHHHHHHHHhHHHhhCC
Confidence 321 147999999999854322111 12222222222223345678899999999999
Q ss_pred CCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004763 228 GGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (732)
Q Consensus 228 GGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd 262 (732)
||++++++++. .++..+...|++.+..++.+.
T Consensus 133 gG~~~~~~~~~---~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 133 GGRVQLIQSSL---NGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CCEEEEEEecc---CChHHHHHHHHhCCCeEEEEE
Confidence 99999998877 467778888888876555544
No 19
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.32 E-value=3.3e-12 Score=136.14 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=99.7
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
++|.+..|.....+.... -.|.+|||+||.+|++|++++.. +...|+++|.|...+..+++|++.+|
T Consensus 104 ktGlFlDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~g----------GA~~v~~VD~S~~al~~a~~N~~lNg 170 (286)
T PF10672_consen 104 KTGLFLDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAG----------GAKEVVSVDSSKRALEWAKENAALNG 170 (286)
T ss_dssp STSS-GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHT----------TESEEEEEES-HHHHHHHHHHHHHTT
T ss_pred cceEcHHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 689999999887765544 34899999999999999987542 23589999999999999999999888
Q ss_pred CC--ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004763 136 TA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (732)
Q Consensus 136 ~~--ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~l 213 (732)
+. .+.++..|+..+..- . ....+||.|++|||.-.-| ...+..-
T Consensus 171 ~~~~~~~~~~~Dvf~~l~~-----------------~-~~~~~fD~IIlDPPsF~k~----------------~~~~~~~ 216 (286)
T PF10672_consen 171 LDLDRHRFIQGDVFKFLKR-----------------L-KKGGRFDLIILDPPSFAKS----------------KFDLERD 216 (286)
T ss_dssp -CCTCEEEEES-HHHHHHH-----------------H-HHTT-EEEEEE--SSEESS----------------TCEHHHH
T ss_pred CCccceEEEecCHHHHHHH-----------------H-hcCCCCCEEEECCCCCCCC----------------HHHHHHH
Confidence 64 688888888764210 0 1236899999999943222 1223456
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCcCc
Q 004763 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVEN 243 (732)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSlnp~EN 243 (732)
..+|+.+|+++|++||.|+.||||-+-..+
T Consensus 217 y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 217 YKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 778999999999999999999999776654
No 20
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.30 E-value=2.1e-11 Score=144.84 Aligned_cols=161 Identities=12% Similarity=0.097 Sum_probs=117.9
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
++|.+..|.....+...+ ..|.+|||+|||+|+.+++++.. +...|+++|+|+..+..+++|++.++
T Consensus 519 ~tG~flDqr~~R~~~~~~---~~g~rVLDlf~gtG~~sl~aa~~----------Ga~~V~~vD~s~~al~~a~~N~~~ng 585 (702)
T PRK11783 519 DTGLFLDHRPTRRMIGQM---AKGKDFLNLFAYTGTASVHAALG----------GAKSTTTVDMSNTYLEWAERNFALNG 585 (702)
T ss_pred cceECHHHHHHHHHHHHh---cCCCeEEEcCCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 467777776654443332 35889999999999999998763 13579999999999999999999998
Q ss_pred CC--ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004763 136 TA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (732)
Q Consensus 136 ~~--ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~l 213 (732)
.. ++.+...|+..+.. .....||.|++|||+-+.+. +..+.| .....
T Consensus 586 ~~~~~v~~i~~D~~~~l~--------------------~~~~~fDlIilDPP~f~~~~--~~~~~~---------~~~~~ 634 (702)
T PRK11783 586 LSGRQHRLIQADCLAWLK--------------------EAREQFDLIFIDPPTFSNSK--RMEDSF---------DVQRD 634 (702)
T ss_pred CCccceEEEEccHHHHHH--------------------HcCCCcCEEEECCCCCCCCC--ccchhh---------hHHHH
Confidence 75 68888888765321 00257999999999876431 101111 22345
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004763 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (732)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd~s 264 (732)
+..++..++++|+|||.|++++|+-+.... .+++.+.+..++++...
T Consensus 635 y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~----~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 635 HVALIKDAKRLLRPGGTLYFSNNKRGFKMD----EEGLAKLGLKAEEITAK 681 (702)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeCCccCChh----HHHHHhCCCeEEEEecC
Confidence 678999999999999999999998765544 56666667677777653
No 21
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.30 E-value=3e-11 Score=131.25 Aligned_cols=131 Identities=24% Similarity=0.229 Sum_probs=102.7
Q ss_pred cccccchhh------hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 64 EAVSMVPPL------FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 64 d~~Smlp~l------lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
.+++|-|.+ ++++++|+.|||.|||+|+.+..++.+ ...|+|+|+|++++..++.|+++.|..
T Consensus 162 ~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-----------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 162 KPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-----------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred CCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-----------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 355665544 357899999999999999988775443 368999999999999999999999988
Q ss_pred ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH
Q 004763 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI 217 (732)
Q Consensus 138 ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~I 217 (732)
++.+...|+..+|. ....||.|++||||....... ...+..++.++
T Consensus 231 ~i~~~~~D~~~l~~---------------------~~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~ 276 (329)
T TIGR01177 231 DFFVKRGDATKLPL---------------------SSESVDAIATDPPYGRSTTAA-------------GDGLESLYERS 276 (329)
T ss_pred CCeEEecchhcCCc---------------------ccCCCCEEEECCCCcCccccc-------------CCchHHHHHHH
Confidence 88888888877542 125799999999986432110 12344678899
Q ss_pred HHHHHhhccCCCEEEEEcCCCC
Q 004763 218 AMRGISLLKVGGRIVYSTCSMN 239 (732)
Q Consensus 218 L~rAl~lLKpGGrLVYSTCSln 239 (732)
|..+.+.|||||+++|.+++-.
T Consensus 277 l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 277 LEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHccCCcEEEEEEcCCC
Confidence 9999999999999999988753
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.27 E-value=1.7e-11 Score=111.90 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=88.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
|.+|||+|||+|..+..+++.. ...++++|+|+..++++++++.+.+. .++.+.+.|...+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~----------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------ 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG----------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE------ 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC----------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH------
T ss_pred CCEEEEcCcchHHHHHHHHHHC----------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh------
Confidence 6799999999999999888763 36999999999999999999999886 578899998876431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
......||.|++|||......... ....+..++++++.++||+||++++.+|+
T Consensus 65 -------------~~~~~~~D~Iv~npP~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 65 -------------PLPDGKFDLIVTNPPYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -------------TCTTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -------------hccCceeEEEEECCCCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 112378999999999875422111 11125668999999999999999999874
No 23
>PRK14967 putative methyltransferase; Provisional
Probab=99.26 E-value=1.3e-10 Score=119.25 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=102.6
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+.+.++++|||+|||+|..+..++.. + .+.|+++|+++.++..+++|+++.+. ++.+.+.|...+
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~-~---------~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~---- 96 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAA-G---------AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA---- 96 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----
Confidence 35678999999999999998888753 1 35899999999999999999988876 466777665431
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCC---CCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVP---CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvP---CSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
.....||.|++|+| |+..+...+.+.. .|..+ ......+.+++..+.++||+||+
T Consensus 97 ------------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 97 ------------------VEFRPFDVVVSNPPYVPAPPDAPPSRGPAR--AWDAG--PDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred ------------------ccCCCeeEEEECCCCCCCCcccccccChhH--hhhCC--CcHHHHHHHHHHHHHHhcCCCcE
Confidence 01257999999986 4444444444433 22211 12234567899999999999999
Q ss_pred EEEEcCCCCCcCcHHHHHHHHHHCCCcEEEE
Q 004763 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELV 261 (732)
Q Consensus 231 LVYSTCSlnp~ENEaVV~~~L~~~~~~velv 261 (732)
+++.+-+++ +-.-+...+++.+..++.+
T Consensus 155 l~~~~~~~~---~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 155 LLLVQSELS---GVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred EEEEEeccc---CHHHHHHHHHHCCCCeEEE
Confidence 997554443 2223456666665455444
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.23 E-value=1.2e-10 Score=105.25 Aligned_cols=110 Identities=23% Similarity=0.274 Sum_probs=84.4
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccc-ccCCCCccC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEA-QHFPGCRAN 155 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da-~~fp~~~~~ 155 (732)
||.+|||+|||+|..+..+++.. +...|+|+|+|+..+..+++++.+.+ ..++.+.+.|+ ..+.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF---------PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-----
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-----
Confidence 68999999999999999999853 35789999999999999999996655 46899999988 2211
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
....||.|+++. .+... ...+ ..+.++|.+..++|+|||+||.++
T Consensus 67 -----------------~~~~~D~v~~~~-~~~~~----------------~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 -----------------FLEPFDLVICSG-FTLHF----------------LLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -----------------TSSCEEEEEECS-GSGGG----------------CCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------cCCCCCEEEECC-Ccccc----------------ccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 125699999843 11100 1111 456788999999999999999999
Q ss_pred C
Q 004763 236 C 236 (732)
Q Consensus 236 C 236 (732)
|
T Consensus 112 ~ 112 (112)
T PF12847_consen 112 C 112 (112)
T ss_dssp -
T ss_pred C
Confidence 8
No 25
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.23 E-value=1.9e-10 Score=120.77 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=105.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
++.+|||+|||+|..+..++.... ...|+|+|+|+..+..+++|+++++. .+.+.|...+..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~---------~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~------ 147 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALD---------GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALP------ 147 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCC---------CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcc------
Confidence 346899999999999999987632 35899999999999999999988763 456666543210
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-Chhhhhhccc----ccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNV----GLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~w~~ws~----~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
......||.|++||||...+.+.. .|+... +.+ ..+......+.+|+..|.++|++||+++
T Consensus 148 -------------~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~-~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~ 213 (251)
T TIGR03704 148 -------------TALRGRVDILAANAPYVPTDAIALMPPEARD-HEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLL 213 (251)
T ss_pred -------------hhcCCCEeEEEECCCCCCchhhhcCCHHHHh-CCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 000146999999999998887654 344422 221 2223455678999999999999999999
Q ss_pred EEcCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004763 233 YSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (732)
Q Consensus 233 YSTCSlnp~ENEaVV~~~L~~~~~~velvd 262 (732)
+.+..- .-+ -|..++++++....++.
T Consensus 214 l~~~~~---~~~-~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 214 VETSER---QAP-LAVEAFARAGLIARVAS 239 (251)
T ss_pred EEECcc---hHH-HHHHHHHHCCCCceeeE
Confidence 986542 333 45666777665444433
No 26
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.19 E-value=1e-10 Score=115.38 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=98.6
Q ss_pred ccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEec
Q 004763 65 AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 144 (732)
Q Consensus 65 ~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~ 144 (732)
.++.+....+...++.+|||+|||+|..+..++... +...|+++|+++..+..++.|+++++..++.+...
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~---------~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~ 88 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG---------PDAKVTAVDINPDALELAKRNAERNGLENVEVVQS 88 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS---------TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC---------CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccc
Confidence 455444444554578899999999999999998753 45789999999999999999999999888888887
Q ss_pred ccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004763 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (732)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~l 224 (732)
|..... ....||.|+++||....+ ........+++..|.++
T Consensus 89 d~~~~~----------------------~~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~ 129 (170)
T PF05175_consen 89 DLFEAL----------------------PDGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRY 129 (170)
T ss_dssp STTTTC----------------------CTTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHH
T ss_pred cccccc----------------------cccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHh
Confidence 764411 137899999999932222 11234667899999999
Q ss_pred ccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004763 225 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (732)
Q Consensus 225 LKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd 262 (732)
||+||+++...-+. ...+..+++.+ +.++.+.
T Consensus 130 Lk~~G~l~lv~~~~--~~~~~~l~~~f----~~~~~~~ 161 (170)
T PF05175_consen 130 LKPGGRLFLVINSH--LGYERLLKELF----GDVEVVA 161 (170)
T ss_dssp EEEEEEEEEEEETT--SCHHHHHHHHH----S--EEEE
T ss_pred ccCCCEEEEEeecC--CChHHHHHHhc----CCEEEEE
Confidence 99999885432222 23344444433 3555544
No 27
>PTZ00146 fibrillarin; Provisional
Probab=99.16 E-value=4.4e-10 Score=119.97 Aligned_cols=108 Identities=26% Similarity=0.403 Sum_probs=79.1
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+.++|+++|||+|||||.+|.+|+..+.. +|.|+|+|++++....|...++.. +|+.++..|+.. |..
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~--------~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~-p~~- 195 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGP--------EGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY-PQK- 195 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCC--------CCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC-hhh-
Confidence 46899999999999999999999999853 689999999977776666655432 677788888754 210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH-HHHHHhhccCCCEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI-AMRGISLLKVGGRIV 232 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~I-L~rAl~lLKpGGrLV 232 (732)
. ......||+||+|+. .|+ |.++ +..|.++|||||+++
T Consensus 196 y----------------~~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~LKpGG~~v 234 (293)
T PTZ00146 196 Y----------------RMLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHFI 234 (293)
T ss_pred h----------------hcccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhccCCCEEE
Confidence 0 001146999999984 111 3333 457888999999999
Q ss_pred EE
Q 004763 233 YS 234 (732)
Q Consensus 233 YS 234 (732)
.+
T Consensus 235 I~ 236 (293)
T PTZ00146 235 IS 236 (293)
T ss_pred EE
Confidence 84
No 28
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.16 E-value=3.4e-10 Score=113.80 Aligned_cols=146 Identities=25% Similarity=0.282 Sum_probs=106.9
Q ss_pred CcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 58 G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
|.-..|..++.+....++++++++|||+|||+|..|..++... +.+.|+|+|+++.++..+++|+++++..
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~---------~~~~V~~vD~s~~~~~~a~~n~~~~~~~ 90 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC---------PKGRVIAIERDEEVVNLIRRNCDRFGVK 90 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 4344566777666677888999999999999999999987652 3589999999999999999999999988
Q ss_pred ceEEEeccccc-CCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHH
Q 004763 138 NLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQ 216 (732)
Q Consensus 138 ni~Vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~ 216 (732)
++.+.+.|+.. ++.+ ...+|+|.+|.. . . ..+
T Consensus 91 ~v~~~~~d~~~~~~~~---------------------~~~~d~v~~~~~----~------------------~----~~~ 123 (196)
T PRK07402 91 NVEVIEGSAPECLAQL---------------------APAPDRVCIEGG----R------------------P----IKE 123 (196)
T ss_pred CeEEEECchHHHHhhC---------------------CCCCCEEEEECC----c------------------C----HHH
Confidence 88888888754 1110 124677777531 0 0 136
Q ss_pred HHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCC-cEEEEe
Q 004763 217 IAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVD 262 (732)
Q Consensus 217 IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~-~velvd 262 (732)
++..+.++|+|||++++.++++ +.-..+.+.++..+. .++.+.
T Consensus 124 ~l~~~~~~LkpgG~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 167 (196)
T PRK07402 124 ILQAVWQYLKPGGRLVATASSL---EGLYAISEGLAQLQARNIEVVQ 167 (196)
T ss_pred HHHHHHHhcCCCeEEEEEeecH---HHHHHHHHHHHhcCCCCceEEE
Confidence 7889999999999999998875 444555666665432 344444
No 29
>PRK04266 fibrillarin; Provisional
Probab=99.15 E-value=5e-10 Score=115.95 Aligned_cols=108 Identities=20% Similarity=0.275 Sum_probs=81.9
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
++++||++|||+|||+|.+|..++..+. .|.|+|+|+++.++..+.+++++. .|+.+..+|+.. |...
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~---------~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~-~~~~ 135 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE---------EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARK-PERY 135 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC---------CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC-cchh
Confidence 7889999999999999999999998753 489999999999999888777654 677888888754 2100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
... ...||.|++|.+ .|+ ....+|..+.++|||||++|.
T Consensus 136 ----------------~~l-~~~~D~i~~d~~---------~p~---------------~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 136 ----------------AHV-VEKVDVIYQDVA---------QPN---------------QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ----------------hhc-cccCCEEEECCC---------Chh---------------HHHHHHHHHHHhcCCCcEEEE
Confidence 001 145999998764 111 013457889999999999998
Q ss_pred E
Q 004763 234 S 234 (732)
Q Consensus 234 S 234 (732)
+
T Consensus 175 ~ 175 (226)
T PRK04266 175 A 175 (226)
T ss_pred E
Confidence 5
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.15 E-value=1.2e-09 Score=116.56 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=104.6
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCcc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~ 154 (732)
..++.+|||+|||+|..+..++... +...|+|+|+|+..+..+++|+++++.. ++.+.+.|.....
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~---------~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---- 185 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF---------PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---- 185 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----
Confidence 3456799999999999999998763 3579999999999999999999999874 6888888764310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~----~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
....||.|++|||+...+.+...+..+. +.+.. +..-...+.+|+..+.++|++||+
T Consensus 186 ------------------~~~~fD~Iv~NPPy~~~~~~~~l~~~~~-~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 186 ------------------PGRKYDLIVSNPPYVDAEDMADLPAEYH-HEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred ------------------CCCCccEEEECCCCCCccchhhCCHhhh-cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 1146999999999988776654333332 23322 112335778999999999999999
Q ss_pred EEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 231 LVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
++.-+.. ...-|...+...+
T Consensus 247 l~~e~g~-----~~~~v~~~~~~~~ 266 (284)
T TIGR03533 247 LVVEVGN-----SMEALEEAYPDVP 266 (284)
T ss_pred EEEEECc-----CHHHHHHHHHhCC
Confidence 9865442 2235566666654
No 31
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=1.8e-10 Score=119.78 Aligned_cols=119 Identities=23% Similarity=0.319 Sum_probs=94.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+.+.||++|||+|||+|-.|..+++..+ +|.|+++|++..++...+..++..+..++.++.+||.++|.
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g---------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf-- 115 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSVG---------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF-- 115 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcC---------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC--
Confidence 4455999999999999999999999854 59999999999999999999998887779999999999772
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
+...||+|.+. .| +|.-+| ..+.|+.+.|.|||||+++-
T Consensus 116 -------------------~D~sFD~vt~~-----fg-lrnv~d----------------~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 116 -------------------PDNSFDAVTIS-----FG-LRNVTD----------------IDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred -------------------CCCccCEEEee-----eh-hhcCCC----------------HHHHHHHHHHhhcCCeEEEE
Confidence 23789999971 12 222222 24689999999999998765
Q ss_pred EcCCCCCcCcHHH
Q 004763 234 STCSMNPVENEAV 246 (732)
Q Consensus 234 STCSlnp~ENEaV 246 (732)
+.+++-.+.-+
T Consensus 155 --le~~~p~~~~~ 165 (238)
T COG2226 155 --LEFSKPDNPVL 165 (238)
T ss_pred --EEcCCCCchhh
Confidence 45655555433
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.14 E-value=9e-10 Score=109.85 Aligned_cols=128 Identities=21% Similarity=0.237 Sum_probs=97.7
Q ss_pred chhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+....|++.++.+|||+|||+|..+..++... +.+.|+++|+++..+..+++++++++..++.+.+.|+..
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQF---------PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 33345677889999999999999999998763 357999999999999999999999888778887776532
Q ss_pred CCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004763 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (732)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (732)
+ + ...||.|+++.. .+ .+ ..++..+.++|+||
T Consensus 93 -~-~---------------------~~~~D~v~~~~~---~~------------------~~----~~~l~~~~~~Lk~g 124 (187)
T PRK08287 93 -E-L---------------------PGKADAIFIGGS---GG------------------NL----TAIIDWSLAHLHPG 124 (187)
T ss_pred -h-c---------------------CcCCCEEEECCC---cc------------------CH----HHHHHHHHHhcCCC
Confidence 0 0 146999998521 01 01 24678899999999
Q ss_pred CEEEEEcCCCCCcCcHHHHHHHHHHCCC
Q 004763 229 GRIVYSTCSMNPVENEAVVAEILRKCEG 256 (732)
Q Consensus 229 GrLVYSTCSlnp~ENEaVV~~~L~~~~~ 256 (732)
|+++++.... ++..-+..++++.+.
T Consensus 125 G~lv~~~~~~---~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 125 GRLVLTFILL---ENLHSALAHLEKCGV 149 (187)
T ss_pred eEEEEEEecH---hhHHHHHHHHHHCCC
Confidence 9999875443 777777888888763
No 33
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.14 E-value=2.4e-10 Score=119.68 Aligned_cols=139 Identities=27% Similarity=0.377 Sum_probs=96.7
Q ss_pred ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
.+--||.-|.+-+ ...|++.||++||+.++|+|+.|..|+.+++ |.|.|+..|+..+|+..++.|++++|
T Consensus 20 rtQIiYpkD~~~I--~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~--------p~G~v~t~E~~~~~~~~A~~n~~~~g 89 (247)
T PF08704_consen 20 RTQIIYPKDISYI--LMRLDIRPGSRVLEAGTGSGSLTHALARAVG--------PTGHVYTYEFREDRAEKARKNFERHG 89 (247)
T ss_dssp SS----HHHHHHH--HHHTT--TT-EEEEE--TTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CcceeeCchHHHH--HHHcCCCCCCEEEEecCCcHHHHHHHHHHhC--------CCeEEEccccCHHHHHHHHHHHHHcC
Confidence 3344555555443 3478999999999999999999999999986 47999999999999999999999999
Q ss_pred CC-ceEEEeccccc--CCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHH
Q 004763 136 TA-NLIVTNHEAQH--FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHS 212 (732)
Q Consensus 136 ~~-ni~Vt~~Da~~--fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~ 212 (732)
.. ++.+.+.|... |+. .....||+|++|.| +-|.
T Consensus 90 l~~~v~~~~~Dv~~~g~~~--------------------~~~~~~DavfLDlp-----------~Pw~------------ 126 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDE--------------------ELESDFDAVFLDLP-----------DPWE------------ 126 (247)
T ss_dssp CCTTEEEEES-GGCG--ST--------------------T-TTSEEEEEEESS-----------SGGG------------
T ss_pred CCCCceeEecceecccccc--------------------cccCcccEEEEeCC-----------CHHH------------
Confidence 85 78898888753 210 01257999999998 2232
Q ss_pred HHHHHHHHHHhhc-cCCCEEE-EEcCCCCCcCcHHHHHHHHHHCC
Q 004763 213 LQVQIAMRGISLL-KVGGRIV-YSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 213 lQ~~IL~rAl~lL-KpGGrLV-YSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
.+.++.+.| |+||+|+ ||.|- |--.-...+|++++
T Consensus 127 ----~i~~~~~~L~~~gG~i~~fsP~i----eQv~~~~~~L~~~g 163 (247)
T PF08704_consen 127 ----AIPHAKRALKKPGGRICCFSPCI----EQVQKTVEALREHG 163 (247)
T ss_dssp ----GHHHHHHHE-EEEEEEEEEESSH----HHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHhcCCceEEEECCCH----HHHHHHHHHHHHCC
Confidence 477888899 8999886 66663 22233445566665
No 34
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.12 E-value=1.4e-10 Score=120.51 Aligned_cols=129 Identities=26% Similarity=0.363 Sum_probs=85.8
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
.++.+++|.+|||+|||+|..|..|+..++ +.|.|+++|+++.++..+++.+++.+..++.++.+||.++|.
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~--------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGDVTRELARRVG--------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHT--S--EEEEET-TTSHHHHHHGGGSS-----------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred hccCCCCCCEEEEeCCChHHHHHHHHHHCC--------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 346789999999999999999998887654 368999999999999999999999988899999999998663
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
....||.|+| +.| +|.-| .+.+.|+...++|||||++
T Consensus 113 ---------------------~d~sfD~v~~-----~fg-lrn~~----------------d~~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 113 ---------------------PDNSFDAVTC-----SFG-LRNFP----------------DRERALREMYRVLKPGGRL 149 (233)
T ss_dssp ----------------------TT-EEEEEE-----ES--GGG-S----------------SHHHHHHHHHHHEEEEEEE
T ss_pred ---------------------CCCceeEEEH-----Hhh-HHhhC----------------CHHHHHHHHHHHcCCCeEE
Confidence 2378999997 222 22111 1356899999999999999
Q ss_pred EEEcCCCCCcCcHHHHHHHHHHC
Q 004763 232 VYSTCSMNPVENEAVVAEILRKC 254 (732)
Q Consensus 232 VYSTCSlnp~ENEaVV~~~L~~~ 254 (732)
+.- .++.-+|. ++..+..-+
T Consensus 150 ~il--e~~~p~~~-~~~~~~~~y 169 (233)
T PF01209_consen 150 VIL--EFSKPRNP-LLRALYKFY 169 (233)
T ss_dssp EEE--EEEB-SSH-HHHHHHHH-
T ss_pred EEe--eccCCCCc-hhhceeeee
Confidence 864 34444554 555555544
No 35
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.12 E-value=1.3e-09 Score=112.52 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=103.2
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
.+.+|||+|||+|..+..++... +...|+++|+++..+..++.+++..+..++.+.+.|+...
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-------- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-------- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc--------
Confidence 34599999999999999998763 3468999999999999999999998888888888876541
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~----~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
.....||.|++|||+...+.+.........|.+.. +..-......++..+.++|++||++++
T Consensus 150 --------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 --------------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred --------------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 01267999999999998776543222222222111 122234456899999999999999998
Q ss_pred EcCCCCCcCcHHHHHHHHHHCC
Q 004763 234 STCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 234 STCSlnp~ENEaVV~~~L~~~~ 255 (732)
. ++. ....-+.++|++.+
T Consensus 216 ~-~~~---~~~~~~~~~l~~~g 233 (251)
T TIGR03534 216 E-IGY---DQGEAVRALFEAAG 233 (251)
T ss_pred E-ECc---cHHHHHHHHHHhCC
Confidence 6 333 23345666777655
No 36
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.12 E-value=5.1e-10 Score=114.32 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=85.3
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
.+|+++++++|||+|||+|..|+.|+...+. .|.|+++|+++..+..+++++++++..++.+..+|+.....
T Consensus 71 ~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~--------~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 71 ELLELKPGMKVLEIGTGSGYQAAVLAEIVGR--------DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHhCCCCcCEEEEECCCccHHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 3568899999999999999999999887542 58899999999999999999999999899999888765211
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
....||+|++++++.. +....+++|++||+|
T Consensus 143 ---------------------~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~l 173 (215)
T TIGR00080 143 ---------------------PLAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGIL 173 (215)
T ss_pred ---------------------ccCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEE
Confidence 1257999999865321 122346689999999
Q ss_pred EEE
Q 004763 232 VYS 234 (732)
Q Consensus 232 VYS 234 (732)
|..
T Consensus 174 v~~ 176 (215)
T TIGR00080 174 VMP 176 (215)
T ss_pred EEE
Confidence 975
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.10 E-value=2e-09 Score=107.74 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=108.8
Q ss_pred HHHHHhhcccccCcEEEccc-------cccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEe
Q 004763 46 RFHKFLKLENEIGNITRQEA-------VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (732)
Q Consensus 46 ~~~~~l~~~~~~G~i~~Qd~-------~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD 118 (732)
.|..||+...+..++++--. ..+-...++..-++.+|||+|||+|..+..++.+ . +.+.|+|+|
T Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~-~--------~~~~V~~iD 73 (181)
T TIGR00138 3 AYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIA-R--------PELKLTLLE 73 (181)
T ss_pred HHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHH-C--------CCCeEEEEe
Confidence 45566666677777776443 1111111222224899999999999999988754 2 357899999
Q ss_pred CCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh
Q 004763 119 LDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI 198 (732)
Q Consensus 119 id~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~ 198 (732)
.++.++.++++++++++..++.+.+.|+..++. ...||.|+++. +
T Consensus 74 ~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----------------------~~~fD~I~s~~-------~------ 118 (181)
T TIGR00138 74 SNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----------------------EEQFDVITSRA-------L------ 118 (181)
T ss_pred CcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----------------------cCCccEEEehh-------h------
Confidence 999999999999999998889999988876421 25799999852 1
Q ss_pred hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCC-CcEEEEec
Q 004763 199 WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE-GSVELVDV 263 (732)
Q Consensus 199 w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~-~~velvd~ 263 (732)
+. ...++..+.++|+|||+++.. .....+..+..+.+++. ..++.+++
T Consensus 119 ------------~~-~~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 119 ------------AS-LNVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred ------------hC-HHHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhhhhcCceEeec
Confidence 00 123566678899999999975 34566666677767632 23666665
No 38
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.09 E-value=4.3e-10 Score=115.15 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=81.9
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
.+|+++||++|||+++|+|..|+.|+.+++. .|.|+++|+++..+..+++++.+++..|+.+..+|+..-
T Consensus 66 ~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~--------~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g-- 135 (209)
T PF01135_consen 66 EALDLKPGDRVLEIGTGSGYQAALLAHLVGP--------VGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG-- 135 (209)
T ss_dssp HHTTC-TT-EEEEES-TTSHHHHHHHHHHST--------TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT--
T ss_pred HHHhcCCCCEEEEecCCCcHHHHHHHHhcCc--------cceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc--
Confidence 4678999999999999999999999998864 699999999999999999999999999999999987641
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
......||+|++.+.| .+.|..|. +.|++||+|
T Consensus 136 -------------------~~~~apfD~I~v~~a~------~~ip~~l~----------------------~qL~~gGrL 168 (209)
T PF01135_consen 136 -------------------WPEEAPFDRIIVTAAV------PEIPEALL----------------------EQLKPGGRL 168 (209)
T ss_dssp -------------------TGGG-SEEEEEESSBB------SS--HHHH----------------------HTEEEEEEE
T ss_pred -------------------cccCCCcCEEEEeecc------chHHHHHH----------------------HhcCCCcEE
Confidence 1123679999996543 34555554 379999999
Q ss_pred EE
Q 004763 232 VY 233 (732)
Q Consensus 232 VY 233 (732)
|.
T Consensus 169 V~ 170 (209)
T PF01135_consen 169 VA 170 (209)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 39
>PRK14968 putative methyltransferase; Provisional
Probab=99.09 E-value=3.6e-09 Score=104.15 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=102.6
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFP 150 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n--i~Vt~~Da~~fp 150 (732)
.+...++.+|||+|||.|..+..++.. ...|+++|+++..+..++.+++..+..+ +.+..+|....
T Consensus 18 ~~~~~~~~~vLd~G~G~G~~~~~l~~~-----------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 18 NAVDKKGDRVLEVGTGSGIVAIVAAKN-----------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred hhhccCCCEEEEEccccCHHHHHHHhh-----------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 344578899999999999999988775 2689999999999999999998877654 66666664331
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
.....||.|++++|+...+...+..+ |..+....+..-......++.++.++||+||.
T Consensus 86 ---------------------~~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 86 ---------------------FRGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred ---------------------ccccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 01137999999999866443222111 22222222222334567889999999999999
Q ss_pred EEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 231 LVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
+++..+++. +..-+..++.+.+
T Consensus 144 ~~~~~~~~~---~~~~l~~~~~~~g 165 (188)
T PRK14968 144 ILLLQSSLT---GEDEVLEYLEKLG 165 (188)
T ss_pred EEEEEcccC---CHHHHHHHHHHCC
Confidence 998887763 3334566777665
No 40
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=1.5e-09 Score=117.21 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=102.2
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~~~~ 157 (732)
..+|||+|||+|..+..++... +...|+|+|+|+..+..+++|+++++.. ++.+.+.|.....
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~---------p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l------- 197 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF---------PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL------- 197 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-------
Confidence 3689999999999999988753 3578999999999999999999999874 5888888764311
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccc----cchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~----~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
....||.|++|||+.+.+.+...+..+. +.|..+ ..-.....+|+..+.++|+|||++++
T Consensus 198 ---------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 198 ---------------PGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ---------------CCCCccEEEECCCCCCccchhhcCHhhc-cCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0146999999999999877654343333 444322 12236778899999999999999987
Q ss_pred EcCCCCCcCcHHHHHHHHHHCC
Q 004763 234 STCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 234 STCSlnp~ENEaVV~~~L~~~~ 255 (732)
-+ .. +..-+...+...+
T Consensus 262 E~---g~--~~~~~~~~~~~~~ 278 (307)
T PRK11805 262 EV---GN--SRVHLEEAYPDVP 278 (307)
T ss_pred EE---Cc--CHHHHHHHHhhCC
Confidence 42 22 1223666666543
No 41
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.04 E-value=4.9e-09 Score=110.04 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=103.6
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
...++.+|||+|||+|..+..++..+ +...|+++|+++..+..++.+++.....++.+...|....
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~---------~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----- 170 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER---------PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----- 170 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-----
Confidence 45678899999999999999998874 3578999999999999999998833445788887776321
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~----~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
.....||.|++||||...+.+...+.-.+.+.+.. +......+.+++..+.++|++||+
T Consensus 171 -----------------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 171 -----------------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred -----------------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 01257999999999998776542222122222221 233446788999999999999999
Q ss_pred EEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 231 LVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
+++.+ +. .. ...+..++.+.+
T Consensus 234 l~~e~-g~--~~-~~~~~~~l~~~g 254 (275)
T PRK09328 234 LLLEI-GY--DQ-GEAVRALLAAAG 254 (275)
T ss_pred EEEEE-Cc--hH-HHHHHHHHHhCC
Confidence 99854 22 12 234566776554
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.03 E-value=5.2e-09 Score=95.66 Aligned_cols=109 Identities=25% Similarity=0.310 Sum_probs=85.6
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+++.++++|||++||+|..+..++..+ +.+.|+++|+++.++..++++++.++..++.+...|+..+..
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLV---------PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHC---------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 3467788999999999999999998864 347999999999999999999999988888888777654221
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
.....||.|+++.+ .+ ...+++..+.++|||||+++
T Consensus 84 -------------------~~~~~~D~v~~~~~------------------------~~-~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 84 -------------------DSLPEPDRVFIGGS------------------------GG-LLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred -------------------hhcCCCCEEEECCc------------------------ch-hHHHHHHHHHHHcCCCCEEE
Confidence 01147999998431 00 12378999999999999998
Q ss_pred EEc
Q 004763 233 YST 235 (732)
Q Consensus 233 YST 235 (732)
.+.
T Consensus 120 ~~~ 122 (124)
T TIGR02469 120 LNA 122 (124)
T ss_pred EEe
Confidence 764
No 43
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.9e-09 Score=112.18 Aligned_cols=111 Identities=21% Similarity=0.274 Sum_probs=92.0
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeccccc
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQH 148 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~ 148 (732)
.+..+++.||++|||.++|+|..|+.||.+++ +.|.|+.+|+...+++.+++|++..+..+ +.+...|..+
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg--------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVG--------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhC--------CCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 34568999999999999999999999999886 47999999999999999999999998876 6666666654
Q ss_pred CCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004763 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (732)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (732)
.- ....||+|++|.| +-| +.|.++.++||||
T Consensus 158 ~~----------------------~~~~vDav~LDmp-----------~PW----------------~~le~~~~~Lkpg 188 (256)
T COG2519 158 GI----------------------DEEDVDAVFLDLP-----------DPW----------------NVLEHVSDALKPG 188 (256)
T ss_pred cc----------------------cccccCEEEEcCC-----------ChH----------------HHHHHHHHHhCCC
Confidence 21 1148999999998 334 3589999999999
Q ss_pred CEEE-EEcCC
Q 004763 229 GRIV-YSTCS 237 (732)
Q Consensus 229 GrLV-YSTCS 237 (732)
|.++ |+.|.
T Consensus 189 g~~~~y~P~v 198 (256)
T COG2519 189 GVVVVYSPTV 198 (256)
T ss_pred cEEEEEcCCH
Confidence 9876 77665
No 44
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=2.2e-09 Score=109.80 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=71.0
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
.++++++|++|||+|||+|..|+.+++.++. .|.|+++|+++..+..+++++++++..++.+.++|+...+
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~--------~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~- 140 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK--------SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY- 140 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-
Confidence 3568899999999999999999999988653 5899999999999999999999999889999999876521
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecC
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDV 184 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv 184 (732)
.....||+|+++.
T Consensus 141 --------------------~~~~~fD~I~~~~ 153 (212)
T PRK13942 141 --------------------EENAPYDRIYVTA 153 (212)
T ss_pred --------------------CcCCCcCEEEECC
Confidence 1125799999853
No 45
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-09 Score=108.91 Aligned_cols=105 Identities=18% Similarity=0.314 Sum_probs=86.4
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~f 149 (732)
...+|+++||++||+++||+|.-|+.|+++. |.|+++|++..-++.++.|++++|..|+.|.++|+..
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-----------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~- 131 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV-----------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK- 131 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHh-----------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc-
Confidence 3457899999999999999999999999983 6999999999999999999999999999999999875
Q ss_pred CCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004763 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (732)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (732)
.......||+|++.+- ...-|+.| ++.||+||
T Consensus 132 --------------------G~~~~aPyD~I~Vtaa------a~~vP~~L----------------------l~QL~~gG 163 (209)
T COG2518 132 --------------------GWPEEAPYDRIIVTAA------APEVPEAL----------------------LDQLKPGG 163 (209)
T ss_pred --------------------CCCCCCCcCEEEEeec------cCCCCHHH----------------------HHhcccCC
Confidence 1123478999998542 22344443 34699999
Q ss_pred EEEEE
Q 004763 230 RIVYS 234 (732)
Q Consensus 230 rLVYS 234 (732)
+||.-
T Consensus 164 rlv~P 168 (209)
T COG2518 164 RLVIP 168 (209)
T ss_pred EEEEE
Confidence 99974
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.99 E-value=3.2e-09 Score=107.73 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=92.8
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc-ccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA-QHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da-~~fp~~~~~~ 156 (732)
++.+|||+|||+|..+..++... +.+.|+|+|+++.++..+++++++.+..++.+.+.|+ ..++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~---------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~---- 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN---------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM---- 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC---------CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----
Confidence 68899999999999999998764 3578999999999999999999988888899999988 543310
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
.....||.|++..|. .|.. .....-...+..+|.++.++|||||+++++|+
T Consensus 107 ---------------~~~~~~D~V~~~~~~-----------p~~~---~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 107 ---------------FPDGSLDRIYLNFPD-----------PWPK---KRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ---------------cCccccceEEEECCC-----------CCCC---ccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 112579999986541 1111 00000111356789999999999999999875
Q ss_pred CCCCcCcHHHHHHHHH
Q 004763 237 SMNPVENEAVVAEILR 252 (732)
Q Consensus 237 Slnp~ENEaVV~~~L~ 252 (732)
++..+..+++
T Consensus 158 ------~~~~~~~~~~ 167 (202)
T PRK00121 158 ------WEGYAEYMLE 167 (202)
T ss_pred ------CHHHHHHHHH
Confidence 4455545444
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.99 E-value=1.4e-08 Score=102.32 Aligned_cols=122 Identities=22% Similarity=0.228 Sum_probs=93.6
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
++++.+|||+|||+|..+..++... +.+.|+++|+++.++..++++++..+..++.+...|+..++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~---------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---- 109 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR---------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---- 109 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC---------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----
Confidence 3458999999999999999888753 358999999999999999999999998888888888766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
...||.|+++. .+ + -..++..+.++|||||++++.-
T Consensus 110 ------------------~~~fDlV~~~~----~~----~------------------~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 110 ------------------EEKFDVVTSRA----VA----S------------------LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ------------------CCCccEEEEcc----cc----C------------------HHHHHHHHHHhcCCCeEEEEEe
Confidence 25799999842 00 0 1347788999999999999875
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcE
Q 004763 236 CSMNPVENEAVVAEILRKCEGSV 258 (732)
Q Consensus 236 CSlnp~ENEaVV~~~L~~~~~~v 258 (732)
.. ...+.+.++.+..|..+
T Consensus 146 ~~----~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 146 GR----DPEEEIAELPKALGGKV 164 (187)
T ss_pred CC----ChHHHHHHHHHhcCceE
Confidence 55 34455666666666554
No 48
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.98 E-value=1.1e-08 Score=109.12 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=99.6
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~~~ 156 (732)
++.+|||+|||+|..+..++... +...|+|+|++++.+..+++|+++++..+ +.+..+|.... +
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~---------~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~---- 178 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEF---------PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--L---- 178 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--C----
Confidence 33799999999999999988763 34689999999999999999999998764 88887775431 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~----~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
....||.|++|||+.....+...++... |.|.. +..-.....+|+..+.++|++||.|+
T Consensus 179 ----------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 179 ----------------AGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred ----------------cCCCccEEEECCCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 0137999999999987654332232211 22211 12223578899999999999999999
Q ss_pred EEcCCCCCcCcHHHHHHHHH
Q 004763 233 YSTCSMNPVENEAVVAEILR 252 (732)
Q Consensus 233 YSTCSlnp~ENEaVV~~~L~ 252 (732)
+-++.- .-++ |.+++.
T Consensus 242 ~e~g~~---q~~~-~~~~~~ 257 (284)
T TIGR00536 242 CEIGNW---QQKS-LKELLR 257 (284)
T ss_pred EEECcc---HHHH-HHHHHH
Confidence 876543 3334 455555
No 49
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.96 E-value=3.1e-09 Score=114.95 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=82.4
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
+..++.+|||+|||.|..+..++.. ...|+|+|+++..++.+++|++.++..++.+...|+..+...
T Consensus 170 ~~~~~~~VLDl~cG~G~~sl~la~~-----------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-- 236 (315)
T PRK03522 170 RELPPRSMWDLFCGVGGFGLHCATP-----------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-- 236 (315)
T ss_pred HhcCCCEEEEccCCCCHHHHHHHhc-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--
Confidence 3346789999999999999998873 368999999999999999999999998899999988764310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
....||.|++|||++|.+. .+...+.-++| ++|||+
T Consensus 237 ------------------~~~~~D~Vv~dPPr~G~~~-------------------------~~~~~l~~~~~-~~ivyv 272 (315)
T PRK03522 237 ------------------QGEVPDLVLVNPPRRGIGK-------------------------ELCDYLSQMAP-RFILYS 272 (315)
T ss_pred ------------------cCCCCeEEEECCCCCCccH-------------------------HHHHHHHHcCC-CeEEEE
Confidence 0135999999999877541 01122233456 689999
Q ss_pred cCCC
Q 004763 235 TCSM 238 (732)
Q Consensus 235 TCSl 238 (732)
+|.-
T Consensus 273 sc~p 276 (315)
T PRK03522 273 SCNA 276 (315)
T ss_pred ECCc
Confidence 9986
No 50
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.95 E-value=1.2e-08 Score=102.06 Aligned_cols=118 Identities=24% Similarity=0.243 Sum_probs=78.7
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
.+++|++|||+|||||+.|.+++.... +.+.|+|+|+++.+ ...++.+++.|+...+.+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~--------~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVG--------GKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhC--------CCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHH
Confidence 457899999999999999999988753 25789999999865 23456677777654211000
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
. ........||.|++|+++...|. |+...... ...+..++..+.++|+|||+++..
T Consensus 90 -----------l--~~~~~~~~~D~V~~~~~~~~~g~----------~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 90 -----------I--RERVGDDKVDVVMSDAAPNISGY----------WDIDHLRS-IDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred -----------H--HHHhCCCCccEEEcCCCCCCCCC----------ccccHHHH-HHHHHHHHHHHHHHccCCCEEEEE
Confidence 0 00012357999999976544442 22111111 134678999999999999999986
Q ss_pred c
Q 004763 235 T 235 (732)
Q Consensus 235 T 235 (732)
.
T Consensus 146 ~ 146 (188)
T TIGR00438 146 V 146 (188)
T ss_pred E
Confidence 3
No 51
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=9.6e-09 Score=104.45 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=82.3
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP 150 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp 150 (732)
.+|+++++++|||+|||+|..|..+++.++. .|.|+++|+++..+..+++++++++.. ++.+.++|+....
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~--------~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIER--------RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 3467889999999999999999999988642 589999999999999999999998875 4788888876421
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
. ....||+|+++... .. +....++.|++||+
T Consensus 138 ~---------------------~~~~fD~Ii~~~~~------~~----------------------~~~~l~~~L~~gG~ 168 (205)
T PRK13944 138 E---------------------KHAPFDAIIVTAAA------ST----------------------IPSALVRQLKDGGV 168 (205)
T ss_pred c---------------------cCCCccEEEEccCc------ch----------------------hhHHHHHhcCcCcE
Confidence 1 12579999997541 11 11234578999999
Q ss_pred EEEE
Q 004763 231 IVYS 234 (732)
Q Consensus 231 LVYS 234 (732)
||..
T Consensus 169 lvi~ 172 (205)
T PRK13944 169 LVIP 172 (205)
T ss_pred EEEE
Confidence 9874
No 52
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=1.1e-08 Score=115.23 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=83.9
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC-CCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF-PGC 152 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~f-p~~ 152 (732)
+++.++++|||+|||+|..++.++.. ...|+|+|+++..++.+++|++.++..|+.+...|+..+ +.+
T Consensus 288 l~~~~~~~vLDl~cG~G~~sl~la~~-----------~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 288 LELQGEELVVDAYCGVGTFTLPLAKQ-----------AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred hccCCCCEEEEcCCCcCHHHHHHHHh-----------CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 46778899999999999999998865 358999999999999999999999999999999988653 110
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
......||.|++|||.+|.. ..++.. +..+++ +++|
T Consensus 357 ------------------~~~~~~~D~vi~dPPr~G~~------------------------~~~l~~-l~~l~~-~~iv 392 (431)
T TIGR00479 357 ------------------PWAGQIPDVLLLDPPRKGCA------------------------AEVLRT-IIELKP-ERIV 392 (431)
T ss_pred ------------------HhcCCCCCEEEECcCCCCCC------------------------HHHHHH-HHhcCC-CEEE
Confidence 01124699999999976532 123332 234778 4689
Q ss_pred EEcCCC
Q 004763 233 YSTCSM 238 (732)
Q Consensus 233 YSTCSl 238 (732)
|.+|.-
T Consensus 393 yvsc~p 398 (431)
T TIGR00479 393 YVSCNP 398 (431)
T ss_pred EEcCCH
Confidence 998973
No 53
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.92 E-value=9e-09 Score=105.48 Aligned_cols=112 Identities=25% Similarity=0.346 Sum_probs=88.1
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.++++++.+|||+|||+|..+..+++.++ +.+.|+++|+++..+..+++++++.+..++.+...|+..++.
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 110 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVG--------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF- 110 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC-
Confidence 56788999999999999999999988754 357999999999999999999988888888888888866431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
....||.|++.-. ++..++ ..++|..+.++|+|||+++
T Consensus 111 --------------------~~~~fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 111 --------------------DDNSFDYVTIGFG------LRNVPD----------------YMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred --------------------CCCCccEEEEecc------cccCCC----------------HHHHHHHHHHHcCcCeEEE
Confidence 1257999987421 211111 1357889999999999998
Q ss_pred EEc
Q 004763 233 YST 235 (732)
Q Consensus 233 YST 235 (732)
..+
T Consensus 149 ~~~ 151 (231)
T TIGR02752 149 CLE 151 (231)
T ss_pred EEE
Confidence 653
No 54
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.90 E-value=1.3e-08 Score=103.50 Aligned_cols=105 Identities=19% Similarity=0.179 Sum_probs=82.3
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
.+|+++++++|||+|||+|..|..++.+. +.|+++|+++..+..+++++++++..++.+...|+....
T Consensus 72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~-----------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 139 (212)
T PRK00312 72 ELLELKPGDRVLEIGTGSGYQAAVLAHLV-----------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW- 139 (212)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHh-----------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-
Confidence 45788999999999999999998777652 579999999999999999999999888888888864310
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
.....||+|+++.+|.. +....+++|+|||+|
T Consensus 140 --------------------~~~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~l 171 (212)
T PRK00312 140 --------------------PAYAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGIL 171 (212)
T ss_pred --------------------CcCCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEE
Confidence 01257999999865321 123346789999999
Q ss_pred EEEcC
Q 004763 232 VYSTC 236 (732)
Q Consensus 232 VYSTC 236 (732)
+.+..
T Consensus 172 v~~~~ 176 (212)
T PRK00312 172 VAPVG 176 (212)
T ss_pred EEEEc
Confidence 98754
No 55
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.89 E-value=8.7e-09 Score=116.51 Aligned_cols=88 Identities=23% Similarity=0.192 Sum_probs=71.4
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+++.++++|||+|||+|..|..++.. .+.|+|+|+++.++..++.|++.++..++.+..+|+..+.. .
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~-----------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~-~ 360 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQ-----------AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT-D 360 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHh-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh-h
Confidence 46788999999999999999998775 26899999999999999999999998889999998865311 0
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (732)
.......||.|++|||++|.
T Consensus 361 ----------------~~~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 361 ----------------QPWALGGFDKVLLDPPRAGA 380 (443)
T ss_pred ----------------hhhhcCCCCEEEECcCCcCh
Confidence 00112469999999998863
No 56
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.88 E-value=1.7e-08 Score=97.17 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=89.4
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
+.+.+|||+|||.|..+..|+..+. +.+.|+++|+++..+..++..+++++..++.+...|..+++.. +
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~--------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~-- 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN--------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-L-- 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST--------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-S--
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC--------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-c--
Confidence 5688999999999999999986543 3688999999999999999999999999999999998875421 1
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
. ..||.|+++.++.. ......+++++.++|++||+++.+.+
T Consensus 71 ----------------~-~~~D~I~~~~~l~~----------------------~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 71 ----------------E-EKFDIIISNGVLHH----------------------FPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ----------------S-TTEEEEEEESTGGG----------------------TSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----------------C-CCeeEEEEcCchhh----------------------ccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 1 67999999765310 11234678999999999999998877
Q ss_pred C
Q 004763 237 S 237 (732)
Q Consensus 237 S 237 (732)
.
T Consensus 112 ~ 112 (152)
T PF13847_consen 112 N 112 (152)
T ss_dssp E
T ss_pred C
Confidence 7
No 57
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.88 E-value=1.4e-08 Score=106.91 Aligned_cols=115 Identities=20% Similarity=0.312 Sum_probs=88.4
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
.+.++.+|++|||++||+|..+.+++..++ +.+.|+++|+++.++..++++...++..++.+...|+..++.
T Consensus 71 ~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g--------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 71 ALAELKPGETVLDLGSGGGFDCFLAARRVG--------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV 142 (272)
T ss_pred hhccCCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC
Confidence 345788999999999999988888877654 357999999999999999999988888888887777665431
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
....||.|+++.- +...|+ ..+++..++++|||||+|
T Consensus 143 ---------------------~~~~fD~Vi~~~v------~~~~~d----------------~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 143 ---------------------ADNSVDVIISNCV------INLSPD----------------KERVFKEAFRVLKPGGRF 179 (272)
T ss_pred ---------------------CCCceeEEEEcCc------ccCCCC----------------HHHHHHHHHHHcCCCcEE
Confidence 1257999997521 111111 136789999999999999
Q ss_pred EEEcCC
Q 004763 232 VYSTCS 237 (732)
Q Consensus 232 VYSTCS 237 (732)
+.+.-.
T Consensus 180 ~i~~~~ 185 (272)
T PRK11873 180 AISDVV 185 (272)
T ss_pred EEEEee
Confidence 987543
No 58
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=5.5e-08 Score=97.35 Aligned_cols=127 Identities=18% Similarity=0.282 Sum_probs=99.7
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
+.+.-.|..|+|+|||+|..+.-.+- ++ ...|+|+|+|++.++.++.|+.+ +..++.++..|...|.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~-lG---------a~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-- 106 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAAL-LG---------ASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-- 106 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHh-cC---------CcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC--
Confidence 34455688999999999998776543 32 46999999999999999999999 4467899999887753
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
..||.|+.||| .|+.+|++|. ..|..|++. +.+|
T Consensus 107 ----------------------~~~dtvimNPP---FG~~~rhaDr-----------------~Fl~~Ale~----s~vV 140 (198)
T COG2263 107 ----------------------GKFDTVIMNPP---FGSQRRHADR-----------------PFLLKALEI----SDVV 140 (198)
T ss_pred ----------------------CccceEEECCC---CccccccCCH-----------------HHHHHHHHh----hheE
Confidence 67899999999 5665666553 467777776 4779
Q ss_pred EEcCCCCCcCcHHHHHHHHHHCCCcEEEE
Q 004763 233 YSTCSMNPVENEAVVAEILRKCEGSVELV 261 (732)
Q Consensus 233 YSTCSlnp~ENEaVV~~~L~~~~~~velv 261 (732)
| |++..-+++-+.......|+.+...
T Consensus 141 Y---siH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 141 Y---SIHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred E---EeeccccHHHHHHHHHhcCCeEEEE
Confidence 9 5777779999999999888765544
No 59
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.85 E-value=4.6e-08 Score=109.18 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=99.4
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
+.++.+|||+|||+|..+..++... +...|+|+|+|+..+..+++|+++++. ++.+.+.|......
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~---------p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l---- 314 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER---------PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDM---- 314 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccc----
Confidence 4567899999999999998887652 357899999999999999999998875 67788877643110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEE
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~----~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
.....||.|++|||....+.....+.. .++.|.. +..-....++|+..+.++|+|||.+
T Consensus 315 ----------------~~~~~FDLIVSNPPYI~~~e~~l~~~~-v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~l 377 (423)
T PRK14966 315 ----------------PSEGKWDIIVSNPPYIENGDKHLLQGD-LRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFL 377 (423)
T ss_pred ----------------ccCCCccEEEECCCCCCcchhhhcchh-hhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEE
Confidence 011469999999998766542211111 1122211 1122345679999999999999998
Q ss_pred EEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 232 VYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 232 VYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
++- +.. ...+-|.+++++.+
T Consensus 378 ilE---iG~-~Q~e~V~~ll~~~G 397 (423)
T PRK14966 378 LLE---HGF-DQGAAVRGVLAENG 397 (423)
T ss_pred EEE---ECc-cHHHHHHHHHHHCC
Confidence 753 222 33445566676654
No 60
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.82 E-value=1.5e-08 Score=103.11 Aligned_cols=101 Identities=32% Similarity=0.403 Sum_probs=74.4
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCCcc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~ 154 (732)
+++|+.||||+||-|.+++++|..- ....|+|+|+++..++.|++|++.+++.+ +.+.++|+..++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~---------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--- 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG---------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--- 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT----------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------
T ss_pred CCcceEEEEccCCccHHHHHHhhhc---------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---
Confidence 6889999999999999999998742 24689999999999999999999999875 7789999988653
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
...||+|+++-|-+. ...|..|+.+++.||.+.|
T Consensus 167 -------------------~~~~drvim~lp~~~--------------------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 167 -------------------EGKFDRVIMNLPESS--------------------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -------------------TT-EEEEEE--TSSG--------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred -------------------ccccCEEEECChHHH--------------------------HHHHHHHHHHhcCCcEEEC
Confidence 267999999877222 1247779999999999987
No 61
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.82 E-value=3.4e-08 Score=104.29 Aligned_cols=116 Identities=20% Similarity=0.295 Sum_probs=86.3
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH---cCCCceEEEeccccc
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR---MCTANLIVTNHEAQH 148 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR---lg~~ni~Vt~~Da~~ 148 (732)
..++++++++|||+|||+|..+..+++.++ +.+.|+|+|+++.++..++.+... .+..++.+.+.|+..
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~--------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVG--------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 356788999999999999999888877653 357999999999999998776532 234578888888877
Q ss_pred CCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004763 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (732)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (732)
+|. ....||.|++. .+++.-+ ...++|..+.+.||||
T Consensus 139 lp~---------------------~~~sfD~V~~~------~~l~~~~----------------d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 139 LPF---------------------DDCYFDAITMG------YGLRNVV----------------DRLKAMQEMYRVLKPG 175 (261)
T ss_pred CCC---------------------CCCCEeEEEEe------cccccCC----------------CHHHHHHHHHHHcCcC
Confidence 552 12579999862 1121111 1246799999999999
Q ss_pred CEEEEEcCCC
Q 004763 229 GRIVYSTCSM 238 (732)
Q Consensus 229 GrLVYSTCSl 238 (732)
|+++.++.+-
T Consensus 176 G~l~i~d~~~ 185 (261)
T PLN02233 176 SRVSILDFNK 185 (261)
T ss_pred cEEEEEECCC
Confidence 9999886653
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.81 E-value=7.9e-08 Score=105.45 Aligned_cols=129 Identities=15% Similarity=0.080 Sum_probs=92.2
Q ss_pred cccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe
Q 004763 64 EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN 143 (732)
Q Consensus 64 d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~ 143 (732)
|..|.+....|......+|||+|||.|..+..++... |...|+++|+++..+..++.++++.+... .+..
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~---------p~~~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~ 251 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS---------PKIRLTLSDVSAAALESSRATLAANGLEG-EVFA 251 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCC-EEEE
Confidence 3444444444444455689999999999999988762 35689999999999999999999887643 4444
Q ss_pred cccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004763 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (732)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~ 223 (732)
.|.... ....||.|++++|- .+|. ......-.+++..+.+
T Consensus 252 ~D~~~~-----------------------~~~~fDlIvsNPPF-H~g~----------------~~~~~~~~~~i~~a~~ 291 (342)
T PRK09489 252 SNVFSD-----------------------IKGRFDMIISNPPF-HDGI----------------QTSLDAAQTLIRGAVR 291 (342)
T ss_pred cccccc-----------------------cCCCccEEEECCCc-cCCc----------------cccHHHHHHHHHHHHH
Confidence 443220 12579999999982 1111 0001233578999999
Q ss_pred hccCCCEEEEEcCCCCCcC
Q 004763 224 LLKVGGRIVYSTCSMNPVE 242 (732)
Q Consensus 224 lLKpGGrLVYSTCSlnp~E 242 (732)
+|||||++++.++++.|.+
T Consensus 292 ~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 292 HLNSGGELRIVANAFLPYP 310 (342)
T ss_pred hcCcCCEEEEEEeCCCChH
Confidence 9999999999999988766
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.81 E-value=4.3e-08 Score=100.27 Aligned_cols=129 Identities=22% Similarity=0.154 Sum_probs=82.6
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc-c
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR-A 154 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~-~ 154 (732)
+++|.+|||+|||||+.|..+++.++ +.|.|+|+|+++- ...+++.+.++|+...+.+. +
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~--------~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i 109 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIG--------DKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKAL 109 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC--------CCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHH
Confidence 47899999999999999999998864 2589999999871 23456888888877632110 0
Q ss_pred CCCCCCCCccccccccccccccccEEEecC-C-CCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDV-P-CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv-P-CSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
. .......||.|++|+ | ++|... .+. .....+...+|..+.++|||||++|
T Consensus 110 ~--------------~~~~~~~~D~V~S~~~~~~~g~~~----~d~---------~~~~~~~~~~L~~~~~~LkpGG~~v 162 (209)
T PRK11188 110 L--------------ERVGDSKVQVVMSDMAPNMSGTPA----VDI---------PRAMYLVELALDMCRDVLAPGGSFV 162 (209)
T ss_pred H--------------HHhCCCCCCEEecCCCCccCCChH----HHH---------HHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 0 011236799999986 3 222110 010 0111223578999999999999998
Q ss_pred EEcCCCCCcCcHHHHHHHHHH
Q 004763 233 YSTCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 233 YSTCSlnp~ENEaVV~~~L~~ 253 (732)
..+ ...+...-+...+++
T Consensus 163 i~~---~~~~~~~~~l~~l~~ 180 (209)
T PRK11188 163 VKV---FQGEGFDEYLREIRS 180 (209)
T ss_pred EEE---ecCcCHHHHHHHHHh
Confidence 753 333443333444544
No 64
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.80 E-value=4e-08 Score=102.76 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=111.2
Q ss_pred ccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecc
Q 004763 67 SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHE 145 (732)
Q Consensus 67 Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~D 145 (732)
++|...+..+....+|||+|||.|..++.+|... +...|+++|+++....++.++++-.+. .++.|.+.|
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~---------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~D 103 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRT---------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEAD 103 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccC---------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhh
Confidence 4444555567778999999999999988887753 247999999999999999999988765 479999999
Q ss_pred cccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004763 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (732)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lL 225 (732)
..+|.... ....||.|+|+||.--.|.- ++++-.+.- ........-..+++.|.++|
T Consensus 104 i~~~~~~~-------------------~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~~---Ar~e~~~~le~~i~~a~~~l 160 (248)
T COG4123 104 IKEFLKAL-------------------VFASFDLIICNPPYFKQGSR-LNENPLRAI---ARHEITLDLEDLIRAAAKLL 160 (248)
T ss_pred HHHhhhcc-------------------cccccCEEEeCCCCCCCccc-cCcChhhhh---hhhhhcCCHHHHHHHHHHHc
Confidence 88875421 12479999999999888865 333321110 00011112346899999999
Q ss_pred cCCCEEEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 226 KVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 226 KpGGrLVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
|+||++.+. +|-|.-.=+-..|++++
T Consensus 161 k~~G~l~~V----~r~erl~ei~~~l~~~~ 186 (248)
T COG4123 161 KPGGRLAFV----HRPERLAEIIELLKSYN 186 (248)
T ss_pred cCCCEEEEE----ecHHHHHHHHHHHHhcC
Confidence 999999774 66677666677777754
No 65
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=7.4e-08 Score=102.92 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=98.6
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
+|||||+|+|..++.++... +...|+|.|+|++.+..++.|++++|+.++.++..|. |..+
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~-------- 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL--FEPL-------- 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec--cccc--------
Confidence 79999999999999888763 4579999999999999999999999986655555432 3221
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc-----ccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV-----GLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~-----~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
..+||.|+++||.-..-.....|.. ....| ... .-.....+|+..+..+|++||.++.-
T Consensus 174 -------------~~~fDlIVsNPPYip~~~~~~~~~~-~~~EP~~Al~~g~-dGl~~~~~i~~~a~~~l~~~g~l~le- 237 (280)
T COG2890 174 -------------RGKFDLIVSNPPYIPAEDPELLPEV-VRYEPLLALVGGG-DGLEVYRRILGEAPDILKPGGVLILE- 237 (280)
T ss_pred -------------CCceeEEEeCCCCCCCcccccChhh-hccCHHHHHccCc-cHHHHHHHHHHhhHHHcCCCcEEEEE-
Confidence 1489999999998765411112211 11111 111 22346789999999999998877653
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004763 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 236 CSlnp~ENEaVV~~~L~~~~~~velvd~ 263 (732)
++++ ....|.+++.+.+. +..+..
T Consensus 238 ~g~~---q~~~v~~~~~~~~~-~~~v~~ 261 (280)
T COG2890 238 IGLT---QGEAVKALFEDTGF-FEIVET 261 (280)
T ss_pred ECCC---cHHHHHHHHHhcCC-ceEEEE
Confidence 5653 35556667776653 444443
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.79 E-value=2.1e-08 Score=101.11 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=88.1
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
.+.+|||+|||+|..+..++... |.+.|+|+|++..++..+..++++.+..|+.+.++|+..++...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~---------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---- 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN---------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---- 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh----
Confidence 45699999999999999998762 46799999999999999999999988889999999987643210
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.....||.|+++.| +.|.+-. ..... -++..++..+.++|||||+|.++|
T Consensus 83 --------------~~~~~~d~v~~~~p-----------dpw~k~~-h~~~r--~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 83 --------------FPDGSLSKVFLNFP-----------DPWPKKR-HNKRR--ITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred --------------CCCCceeEEEEECC-----------CcCCCCC-ccccc--cCCHHHHHHHHHHhCCCCEEEEEe
Confidence 11247999999866 2232100 00011 124678999999999999998876
No 67
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.78 E-value=2.8e-08 Score=107.81 Aligned_cols=126 Identities=25% Similarity=0.282 Sum_probs=99.9
Q ss_pred cccchhh------hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce
Q 004763 66 VSMVPPL------FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL 139 (732)
Q Consensus 66 ~Smlp~l------lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni 139 (732)
.||-|-+ +..+++|+.|||=.||+||....+.-+ ...||++|++.+++.-++.|++.++...+
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-----------G~~viG~Did~~mv~gak~Nl~~y~i~~~ 247 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-----------GARVIGSDIDERMVRGAKINLEYYGIEDY 247 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-----------CceEeecchHHHHHhhhhhhhhhhCcCce
Confidence 6665543 347899999999999999987765333 47999999999999999999999998877
Q ss_pred EEEec-ccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH
Q 004763 140 IVTNH-EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA 218 (732)
Q Consensus 140 ~Vt~~-Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL 218 (732)
.+... ||...| ++ ...||.|.+|||.--.- ...+..|..+..++|
T Consensus 248 ~~~~~~Da~~lp-l~--------------------~~~vdaIatDPPYGrst-------------~~~~~~l~~Ly~~~l 293 (347)
T COG1041 248 PVLKVLDATNLP-LR--------------------DNSVDAIATDPPYGRST-------------KIKGEGLDELYEEAL 293 (347)
T ss_pred eEEEecccccCC-CC--------------------CCccceEEecCCCCccc-------------ccccccHHHHHHHHH
Confidence 66555 998866 21 24699999999953322 223345788999999
Q ss_pred HHHHhhccCCCEEEEEcC
Q 004763 219 MRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 219 ~rAl~lLKpGGrLVYSTC 236 (732)
..+.+.||+||++||.+-
T Consensus 294 e~~~evLk~gG~~vf~~p 311 (347)
T COG1041 294 ESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHhhcCcEEEEecC
Confidence 999999999999999865
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.74 E-value=1.7e-07 Score=103.98 Aligned_cols=135 Identities=15% Similarity=0.158 Sum_probs=95.1
Q ss_pred ccCcEEEc--cccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004763 56 EIGNITRQ--EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (732)
Q Consensus 56 ~~G~i~~Q--d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR 133 (732)
..|.|+.. |.++.+....|....+.+|||+|||+|..+..++.. .|...|+++|+|+..+..+++|++.
T Consensus 204 ~~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~---------~P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 204 HANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK---------NPQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred cCCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHh---------CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45666664 555665555555555679999999999999988876 2567999999999999999999987
Q ss_pred cCCC---ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch
Q 004763 134 MCTA---NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL 210 (732)
Q Consensus 134 lg~~---ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L 210 (732)
++.. ++.+...|+.. . ....+||.|+|+||.--...+ .
T Consensus 275 n~~~~~~~v~~~~~D~l~--~--------------------~~~~~fDlIlsNPPfh~~~~~----------------~- 315 (378)
T PRK15001 275 NMPEALDRCEFMINNALS--G--------------------VEPFRFNAVLCNPPFHQQHAL----------------T- 315 (378)
T ss_pred cCcccCceEEEEEccccc--c--------------------CCCCCEEEEEECcCcccCccC----------------C-
Confidence 7642 45555555422 0 112479999999995421111 0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004763 211 HSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (732)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (732)
...-.+++..+.+.|++||++...+-..
T Consensus 316 ~~ia~~l~~~a~~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 316 DNVAWEMFHHARRCLKINGELYIVANRH 343 (378)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence 0123468999999999999998875443
No 69
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.73 E-value=1.8e-07 Score=107.71 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=98.7
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~~~ 156 (732)
++.+|||+|||+|..+..++..+ +...|+|+|+|+..+..++.|+++++.. ++.+..+|....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~---------p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~------- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL---------PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN------- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-------
Confidence 45799999999999999887763 3579999999999999999999998864 577777765321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCcccc-Chhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEE
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~w~~ws~~~----~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
.....||.|+++||......... .++. ..+.|.. +..-.....+|+..+.++|++||.+
T Consensus 202 ---------------~~~~~fDlIvsNPPYi~~~~~~~l~~~v-~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l 265 (506)
T PRK01544 202 ---------------IEKQKFDFIVSNPPYISHSEKSEMAIET-INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKI 265 (506)
T ss_pred ---------------CcCCCccEEEECCCCCCchhhhhcCchh-hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEE
Confidence 01257999999999887654211 1111 2222211 1122346778999999999999999
Q ss_pred EEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 232 VYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 232 VYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
++. ++.+ ...-|..++.+.+
T Consensus 266 ~lE-ig~~---q~~~v~~~~~~~g 285 (506)
T PRK01544 266 ILE-IGFK---QEEAVTQIFLDHG 285 (506)
T ss_pred EEE-ECCc---hHHHHHHHHHhcC
Confidence 874 4442 3344566666544
No 70
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.73 E-value=8.9e-08 Score=104.18 Aligned_cols=105 Identities=15% Similarity=0.306 Sum_probs=81.4
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.++++++++|||+|||+|..++.++...+. .|.|+++|+++.++..++++++++|..++.+..+|+...+.
T Consensus 75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~--------~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~- 145 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGE--------KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP- 145 (322)
T ss_pred hcCCCCCCEEEEEeCCccHHHHHHHHhcCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-
Confidence 356889999999999999999999887542 47899999999999999999999999888888888754321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
....||+|+++.. +.. +....++.|++||+++
T Consensus 146 --------------------~~~~fD~Ii~~~g------~~~----------------------ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 146 --------------------EFAPYDVIFVTVG------VDE----------------------VPETWFTQLKEGGRVI 177 (322)
T ss_pred --------------------ccCCccEEEECCc------hHH----------------------hHHHHHHhcCCCCEEE
Confidence 1146999998632 111 1223456899999988
Q ss_pred EE
Q 004763 233 YS 234 (732)
Q Consensus 233 YS 234 (732)
..
T Consensus 178 v~ 179 (322)
T PRK13943 178 VP 179 (322)
T ss_pred EE
Confidence 64
No 71
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=9.6e-08 Score=104.18 Aligned_cols=131 Identities=22% Similarity=0.212 Sum_probs=96.9
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCCcc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~ 154 (732)
+.+|++||||+||-|.+|+.+|..- .-.|+|+|+|+..++.|++|++.++..+ +.+.++|+..++..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g----------~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG----------RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-- 253 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC----------CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc--
Confidence 5679999999999999999998751 2239999999999999999999999877 78899999886531
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
...||+|+..-|- .+...+..|+++++.||.|.|=
T Consensus 254 -------------------~~~aDrIim~~p~--------------------------~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 254 -------------------LGVADRIIMGLPK--------------------------SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred -------------------cccCCEEEeCCCC--------------------------cchhhHHHHHHHhhcCcEEEEE
Confidence 1679999986551 2235678899999999999864
Q ss_pred -cCCCCCcC--cHHHHHHHHHHCCCcEEEEec
Q 004763 235 -TCSMNPVE--NEAVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 235 -TCSlnp~E--NEaVV~~~L~~~~~~velvd~ 263 (732)
+|--+..+ .+..+..+..+.+-.++.+.+
T Consensus 289 ~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~ 320 (341)
T COG2520 289 EFVPEDDIEERPEKRIKSAARKGGYKVEVLKV 320 (341)
T ss_pred eccchhhcccchHHHHHHHHhhccCcceEEEE
Confidence 34333322 334555555555434555554
No 72
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.71 E-value=1.5e-07 Score=97.93 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=100.1
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEecccccC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHF 149 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~---~ni~Vt~~Da~~f 149 (732)
.|++..|++|||||+|+|-.|+-|++.+..... ...+.|+..|+++..+....+.+++.+. .++.++.+||..+
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~---~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFG---DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhccccC---CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 468889999999999999999999998764211 2247999999999999999999877664 3488999999987
Q ss_pred CCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004763 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (732)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (732)
|. ....||+... +-| ||--+++ .+.|+.|++.|||||
T Consensus 172 pF---------------------dd~s~D~yTi-----afG-IRN~th~----------------~k~l~EAYRVLKpGG 208 (296)
T KOG1540|consen 172 PF---------------------DDDSFDAYTI-----AFG-IRNVTHI----------------QKALREAYRVLKPGG 208 (296)
T ss_pred CC---------------------CCCcceeEEE-----ecc-eecCCCH----------------HHHHHHHHHhcCCCc
Confidence 62 1256888875 223 3322222 357899999999999
Q ss_pred EEEEEcCCCCCcCcHHHHHHHHHHC
Q 004763 230 RIVYSTCSMNPVENEAVVAEILRKC 254 (732)
Q Consensus 230 rLVYSTCSlnp~ENEaVV~~~L~~~ 254 (732)
++. |=..+.+|.+.+..+-..+
T Consensus 209 rf~---cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 209 RFS---CLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred EEE---EEEccccccHHHHHHHHhh
Confidence 876 7666666656667777765
No 73
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5.5e-08 Score=109.55 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=76.9
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
.+++..++++|||+.||-|.+|+.||.. ...|+|+|+++..+..+.+|++.++..|+.+..+++..|..
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~-----------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKR-----------VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHhhcCCCEEEEeccCCChhhhhhccc-----------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 3567789999999999999999999854 47899999999999999999999999999999999988653
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (732)
.. .....||.|++|||-+|.+
T Consensus 356 ~~------------------~~~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 356 AW------------------WEGYKPDVVVVDPPRAGAD 376 (432)
T ss_pred hc------------------cccCCCCEEEECCCCCCCC
Confidence 11 1235799999999988866
No 74
>PRK08317 hypothetical protein; Provisional
Probab=98.71 E-value=2e-07 Score=94.52 Aligned_cols=129 Identities=24% Similarity=0.288 Sum_probs=90.6
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+++.++.+|||+|||+|..+..++..++ +.+.|+++|+++.++..++.+.. ....++.+...|+..++.
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~--------~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~- 83 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVG--------PEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLPF- 83 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcC--------CCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCCC-
Confidence 45778899999999999999999988753 35799999999999998877632 223567777777765431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
....||.|++... +. .+ .....++.++.++|||||+|+
T Consensus 84 --------------------~~~~~D~v~~~~~------~~-------~~---------~~~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRV------LQ-------HL---------EDPARALAEIARVLRPGGRVV 121 (241)
T ss_pred --------------------CCCCceEEEEech------hh-------cc---------CCHHHHHHHHHHHhcCCcEEE
Confidence 1257999997421 10 00 113467899999999999999
Q ss_pred EEcCCCC----CcCcHHHHHHHHHH
Q 004763 233 YSTCSMN----PVENEAVVAEILRK 253 (732)
Q Consensus 233 YSTCSln----p~ENEaVV~~~L~~ 253 (732)
.+.+... ...+...+..++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (241)
T PRK08317 122 VLDTDWDTLVWHSGDRALMRKILNF 146 (241)
T ss_pred EEecCCCceeecCCChHHHHHHHHH
Confidence 8876532 22344555555543
No 75
>PLN02244 tocopherol O-methyltransferase
Probab=98.68 E-value=1.8e-07 Score=102.37 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=83.8
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~ 155 (732)
+++.+|||+|||+|..+..|++.. .+.|+++|+++..+..++++++..+. .++.+...|+..+|.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~----------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~---- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY----------GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF---- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC----
Confidence 788999999999999999998763 25899999999999999998888776 468888888876542
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
....||.|++- +.+.+.++ ..+++..+.++|||||+|+.++
T Consensus 183 -----------------~~~~FD~V~s~------~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 183 -----------------EDGQFDLVWSM------ESGEHMPD----------------KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred -----------------CCCCccEEEEC------CchhccCC----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 12679999972 11111111 2467888999999999999887
Q ss_pred CC
Q 004763 236 CS 237 (732)
Q Consensus 236 CS 237 (732)
+.
T Consensus 224 ~~ 225 (340)
T PLN02244 224 WC 225 (340)
T ss_pred ec
Confidence 54
No 76
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.67 E-value=1e-07 Score=105.80 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=67.2
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
+..++.+|||++||.|..++.++.. ...|+|+|+++..++.+++|++.++..++.+.+.|+..+...
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~-----------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-- 296 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP-----------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-- 296 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc-----------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--
Confidence 3346789999999999999988742 358999999999999999999999988899999988664210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCC
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (732)
....||.|++|||-.|
T Consensus 297 ------------------~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 297 ------------------QMSAPELVLVNPPRRG 312 (374)
T ss_pred ------------------cCCCCCEEEECCCCCC
Confidence 0134999999999543
No 77
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.67 E-value=1.5e-07 Score=104.31 Aligned_cols=119 Identities=15% Similarity=0.270 Sum_probs=94.6
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
...+..|||+|||+|..++++|... |.+.++|+|++..++..+..++.+.+..|+.++++||..+...
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~---------P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~--- 187 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNN---------PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL--- 187 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh---
Confidence 3557799999999999999998873 5689999999999999999999999999999999999764321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.....||+|++..| +-|.+ ..-.++ .+..+|..+.++|++||.+...|
T Consensus 188 ----------------~~~~s~D~I~lnFP-----------dPW~K---krHRRl--v~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 188 ----------------LPSNSVEKIFVHFP-----------VPWDK---KPHRRV--ISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ----------------CCCCceeEEEEeCC-----------CCccc---cchhhc--cHHHHHHHHHHHcCCCcEEEEEE
Confidence 12367999998654 33432 110122 36889999999999999999999
Q ss_pred CCC
Q 004763 236 CSM 238 (732)
Q Consensus 236 CSl 238 (732)
.+.
T Consensus 236 D~~ 238 (390)
T PRK14121 236 DSE 238 (390)
T ss_pred ECH
Confidence 876
No 78
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.65 E-value=2.1e-07 Score=97.19 Aligned_cols=109 Identities=22% Similarity=0.169 Sum_probs=83.0
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCcc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~ 154 (732)
+.++.+|||+|||+|..+..++..+.. +.+.|+|+|.++.++..++.++.+.+.. ++.+..+|+..+|.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--- 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--- 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC---
Confidence 457899999999999999888876532 4689999999999999999999887764 68888887765431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch-HHHHHHHHHHHHhhccCCCEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL-HSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L-~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
..||.|++.- ++. .+ ...+.+++.+..+.|||||.++.
T Consensus 124 --------------------~~~D~vv~~~------~l~---------------~l~~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 124 --------------------ENASMVVLNF------TLQ---------------FLEPSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred --------------------CCCCEEehhh------HHH---------------hCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3478887521 110 01 12246789999999999999999
Q ss_pred Ec
Q 004763 234 ST 235 (732)
Q Consensus 234 ST 235 (732)
+.
T Consensus 163 ~e 164 (247)
T PRK15451 163 SE 164 (247)
T ss_pred EE
Confidence 86
No 79
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.65 E-value=4.2e-07 Score=98.96 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=78.8
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~ 153 (732)
.+.+|.+|||++||.|..+..|+.. .+.|+++|.+++.+..++.++...+. .++.+...++..++.
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~-----------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-- 194 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM-----------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-- 194 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc-----------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--
Confidence 3467889999999999988877652 36899999999999999877654443 467788887766542
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
....||.|++ .+++.+-++ ...+|....++|||||+++.
T Consensus 195 -------------------~~~~FD~Vi~------~~vLeHv~d----------------~~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 195 -------------------EGRKFDAVLS------LEVIEHVAN----------------PAEFCKSLSALTIPNGATVL 233 (322)
T ss_pred -------------------ccCCCCEEEE------hhHHHhcCC----------------HHHHHHHHHHHcCCCcEEEE
Confidence 1267999997 122222111 23578888899999999998
Q ss_pred Ec
Q 004763 234 ST 235 (732)
Q Consensus 234 ST 235 (732)
+|
T Consensus 234 st 235 (322)
T PLN02396 234 ST 235 (322)
T ss_pred EE
Confidence 86
No 80
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.64 E-value=2e-07 Score=94.99 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=64.2
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
.++.+|||+|||+|+.++.++.. ..+.|+++|+++..+..+++|++.++..++.+.+.|+..+..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr----------~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----- 116 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR----------YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----- 116 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh-----
Confidence 46789999999999998865432 136899999999999999999999998888898888765321
Q ss_pred CCCCCCccccccccccccccccEEEecCCC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (732)
.....||.|++|||.
T Consensus 117 ---------------~~~~~fDlV~~DPPy 131 (199)
T PRK10909 117 ---------------QPGTPHNVVFVDPPF 131 (199)
T ss_pred ---------------hcCCCceEEEECCCC
Confidence 011459999999993
No 81
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.63 E-value=1.3e-07 Score=104.20 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=63.0
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
++++.++ .|||++||.|..|+.||.. ...|+|+|+++..+..+++|++.+++.|+.+...++..+...
T Consensus 192 ~l~~~~~-~vlDlycG~G~fsl~la~~-----------~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 192 WLDLSKG-DVLDLYCGVGTFSLPLAKK-----------AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKA 259 (352)
T ss_dssp HCTT-TT-EEEEES-TTTCCHHHHHCC-----------SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCH
T ss_pred HhhcCCC-cEEEEeecCCHHHHHHHhh-----------CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHH
Confidence 4566666 8999999999999999775 468999999999999999999999999999998887665321
Q ss_pred ccCC-CCCCCCccccccccccccccccEEEecCCCCCCC
Q 004763 153 RANK-NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (732)
Q Consensus 153 ~~~~-~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (732)
.... .... ..........+|.||+|||-+|.+
T Consensus 260 ~~~~r~~~~------~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 260 LAKAREFNR------LKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp HCCS-GGTT------GGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhHHHHh------hhhhhhhhcCCCEEEEcCCCCCch
Confidence 0000 0000 000011224689999999988866
No 82
>PLN02476 O-methyltransferase
Probab=98.62 E-value=1.9e-07 Score=99.63 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=106.4
Q ss_pred cchhhHHHHHHHhhcccccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEe
Q 004763 39 RKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (732)
Q Consensus 39 rk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD 118 (732)
+..+.+..+.++-... ....+........+...++......+||+++++.|.-|+.+|..+.. .|.|+++|
T Consensus 80 ~~~~~L~~l~e~a~~~-~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~--------~G~V~TiE 150 (278)
T PLN02476 80 REPKILRQLREETSKM-RGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPE--------SGCLVACE 150 (278)
T ss_pred CCCHHHHHHHHHHHhc-cCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCC--------CCEEEEEE
Confidence 3445566666553311 11233444455555566667778899999999999999999988753 68999999
Q ss_pred CCHHHHHHHHHHHHHcCCC-ceEEEecccccCC-CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccCh
Q 004763 119 LDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAP 196 (732)
Q Consensus 119 id~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~p 196 (732)
.+++++..++.++++.|.. ++.+..+||.... .+. .......||.|++|++
T Consensus 151 ~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~----------------~~~~~~~FD~VFIDa~----------- 203 (278)
T PLN02476 151 RDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI----------------QNGEGSSYDFAFVDAD----------- 203 (278)
T ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH----------------hcccCCCCCEEEECCC-----------
Confidence 9999999999999999986 7899999887632 110 0011257999999986
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 197 DIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 197 d~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.......+..++++|++||.||.=-
T Consensus 204 --------------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 204 --------------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred --------------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 0233567788899999999999753
No 83
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=3.5e-07 Score=95.91 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=102.2
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~~~~ 157 (732)
+..+||+|||+|..++.|+..| |.+.|+|+|+++..+.++.+|++|+++. .+.|.+++-+.
T Consensus 149 ~~~ildlgtGSGaIslsll~~L---------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~--------- 210 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL---------PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES--------- 210 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC---------CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc---------
Confidence 4579999999999999887765 4689999999999999999999999875 47777664332
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-Chhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~w~~ws~~~----~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
+...+......++|.++++||+-.+--++. .|++ +.+.+.. +..-...-..+..-|-++|++||.++
T Consensus 211 -------d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV-~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 211 -------DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEV-RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred -------ccccccccccCceeEEecCCCcccccchhhcCchh-eecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 011122233478999999999876554432 3333 2233322 22333456677888999999999999
Q ss_pred EEcCCCCCcCcHHHHHHHHH
Q 004763 233 YSTCSMNPVENEAVVAEILR 252 (732)
Q Consensus 233 YSTCSlnp~ENEaVV~~~L~ 252 (732)
+.+--. .+....|...+.
T Consensus 283 le~~~~--~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 283 LELVER--KEHSYLVRIWMI 300 (328)
T ss_pred EEeccc--ccCcHHHHHHHH
Confidence 976543 345566666665
No 84
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.61 E-value=4.7e-07 Score=91.60 Aligned_cols=109 Identities=17% Similarity=0.028 Sum_probs=79.7
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
++...++.+|||+|||+|..+..|++. ...|+|+|+++..++.++.++...+..++.+...|...++.
T Consensus 25 ~l~~~~~~~vLDiGcG~G~~a~~La~~-----------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~- 92 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGNGRNSLYLAAN-----------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF- 92 (197)
T ss_pred hcccCCCCcEEEECCCCCHHHHHHHHC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-
Confidence 345567789999999999999998864 25899999999999999998888787777777776554321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
...||.|++-. ++.. +. ......++.+..++|||||.++
T Consensus 93 ---------------------~~~fD~I~~~~------~~~~-------~~-------~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 93 ---------------------DGEYDFILSTV------VLMF-------LE-------AKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ---------------------CCCcCEEEEec------chhh-------CC-------HHHHHHHHHHHHHHcCCCcEEE
Confidence 14699999721 1100 00 1234578899999999999966
Q ss_pred EE
Q 004763 233 YS 234 (732)
Q Consensus 233 YS 234 (732)
+.
T Consensus 132 ~~ 133 (197)
T PRK11207 132 IV 133 (197)
T ss_pred EE
Confidence 54
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.60 E-value=6.3e-07 Score=93.93 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=80.6
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCcc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~ 154 (732)
+.++.+|||++||+|..+..++.. + .+.|+|+|+|+.++..+++|+++.++. .+.+...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g---------~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~---------- 176 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G---------AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG---------- 176 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC----------
Confidence 568999999999999877655432 2 346999999999999999999887762 2211100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
...||.|+++.. ......++..+.++|||||+++.|
T Consensus 177 -------------------~~~fD~Vvani~-------------------------~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 177 -------------------DLKADVIVANIL-------------------------ANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred -------------------CCCcCEEEEcCc-------------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 126999998531 122346788999999999999998
Q ss_pred cCCCCCcCcHHHHHHHHHHCC
Q 004763 235 TCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 235 TCSlnp~ENEaVV~~~L~~~~ 255 (732)
.... +...-+...+++++
T Consensus 213 gi~~---~~~~~v~~~l~~~G 230 (250)
T PRK00517 213 GILE---EQADEVLEAYEEAG 230 (250)
T ss_pred ECcH---hhHHHHHHHHHHCC
Confidence 6543 44455566777765
No 86
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.60 E-value=1e-07 Score=95.84 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=58.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~~~ 156 (732)
+|.+|||+|||+|+..+.++.. +...|+.+|.+++.+..+++|++.++..+ +.+...|+..+..-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR----------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~---- 107 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR----------GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLK---- 107 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHH----
T ss_pred CCCeEEEcCCccCccHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHh----
Confidence 5889999999999988776543 35699999999999999999999999875 88888887653210
Q ss_pred CCCCCCccccccccccccccccEEEecCCCC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS 187 (732)
.......||.|++|||.-
T Consensus 108 -------------~~~~~~~fDiIflDPPY~ 125 (183)
T PF03602_consen 108 -------------LAKKGEKFDIIFLDPPYA 125 (183)
T ss_dssp -------------HHHCTS-EEEEEE--STT
T ss_pred -------------hcccCCCceEEEECCCcc
Confidence 001237899999999943
No 87
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.60 E-value=3.4e-07 Score=95.29 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=90.8
Q ss_pred chhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccc
Q 004763 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQ 147 (732)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~ 147 (732)
+..+++...+..+|||+|+|.|.-++.|+..+.. .|.|+++|++++++..+++|+++.|.. ++.+..+|+.
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~--------~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPE--------DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 4445566778899999999999999999887643 689999999999999999999999975 5888889886
Q ss_pred cCC-CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004763 148 HFP-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (732)
Q Consensus 148 ~fp-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLK 226 (732)
... .+. .......||.|++|+. | .....++..++++|+
T Consensus 131 ~~L~~l~----------------~~~~~~~fD~VfiDa~--------k-----------------~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 131 SALDQLL----------------NNDPKPEFDFAFVDAD--------K-----------------PNYVHFHEQLLKLVK 169 (234)
T ss_pred HHHHHHH----------------hCCCCCCCCEEEECCC--------H-----------------HHHHHHHHHHHHhcC
Confidence 531 110 0011257999999875 0 122356788899999
Q ss_pred CCCEEEEEcC
Q 004763 227 VGGRIVYSTC 236 (732)
Q Consensus 227 pGGrLVYSTC 236 (732)
|||.||.-.+
T Consensus 170 ~GG~ii~dn~ 179 (234)
T PLN02781 170 VGGIIAFDNT 179 (234)
T ss_pred CCeEEEEEcC
Confidence 9999997543
No 88
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.58 E-value=1.1e-06 Score=94.27 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=82.5
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCCcc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~ 154 (732)
+.++.+|||+|||+|..+..++.. + .+.|+|+|+|+.++..+++|+.+.+... +.+...+...
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g---------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~------ 220 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G---------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ------ 220 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc------
Confidence 467899999999999988766542 2 3689999999999999999999887653 3333332111
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
.....||.|+++.. .....+++..+.++|||||+|+.|
T Consensus 221 -----------------~~~~~fDlVvan~~-------------------------~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 221 -----------------PIEGKADVIVANIL-------------------------AEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred -----------------ccCCCceEEEEecC-------------------------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11257999998642 011246788999999999999998
Q ss_pred cCCCCCcCcHHHHHHHHHH
Q 004763 235 TCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 235 TCSlnp~ENEaVV~~~L~~ 253 (732)
...- +...-|.+++++
T Consensus 259 gi~~---~~~~~v~~~~~~ 274 (288)
T TIGR00406 259 GILE---TQAQSVCDAYEQ 274 (288)
T ss_pred eCcH---hHHHHHHHHHHc
Confidence 6532 344445555554
No 89
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.2e-06 Score=93.68 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=114.7
Q ss_pred ccccCcEEEc--cccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004763 54 ENEIGNITRQ--EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (732)
Q Consensus 54 ~~~~G~i~~Q--d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~ 131 (732)
-+..|.|+.. |..|.+...-|...++.+|||+|||-|-..+.++.. .|...|+-+|+|...++..+.|+
T Consensus 132 ~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~---------~p~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 132 KTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK---------SPQAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred EeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHh---------CCCCeEEEEecCHHHHHHHHHhH
Confidence 4567888874 678988888888888889999999999999999887 35689999999999999999999
Q ss_pred HHcCCCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004763 132 KRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (732)
Q Consensus 132 kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~ 211 (732)
+.++..+..|...|... . . ..+||.|+++||-- .| ..-.+
T Consensus 203 ~~N~~~~~~v~~s~~~~--~--------------------v-~~kfd~IisNPPfh-~G----------------~~v~~ 242 (300)
T COG2813 203 AANGVENTEVWASNLYE--P--------------------V-EGKFDLIISNPPFH-AG----------------KAVVH 242 (300)
T ss_pred HHcCCCccEEEEecccc--c--------------------c-cccccEEEeCCCcc-CC----------------cchhH
Confidence 99988875333333211 1 1 14899999999932 22 12334
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004763 212 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (732)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd 262 (732)
.+-.+|+..|.+.|++||.|-...-..-|. ...|++.-+.++.+.
T Consensus 243 ~~~~~~i~~A~~~L~~gGeL~iVan~~l~y------~~~L~~~Fg~v~~la 287 (300)
T COG2813 243 SLAQEIIAAAARHLKPGGELWIVANRHLPY------EKKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEcCCCCh------HHHHHHhcCCEEEEE
Confidence 555689999999999999887766555444 345555555666654
No 90
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.55 E-value=3.1e-07 Score=96.18 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=80.9
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~ 155 (732)
.++.+|||+|||+|..+..+++. ...|+++|+++.++..++.+++..+. .++.+...|+..++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-----------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--- 108 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-----------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--- 108 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh---
Confidence 45679999999999999998774 35899999999999999999988886 4688888887664321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
....||.|+|... +. |- .-...+|..+.++|||||+|+...
T Consensus 109 -----------------~~~~fD~V~~~~v------l~--------~~--------~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 109 -----------------LETPVDLILFHAV------LE--------WV--------ADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred -----------------cCCCCCEEEehhH------HH--------hh--------CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 1257999997321 11 00 012367889999999999998654
Q ss_pred CC
Q 004763 236 CS 237 (732)
Q Consensus 236 CS 237 (732)
.+
T Consensus 150 ~n 151 (255)
T PRK11036 150 YN 151 (255)
T ss_pred EC
Confidence 44
No 91
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.55 E-value=7e-07 Score=92.98 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=78.7
Q ss_pred ccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 004763 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT 142 (732)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt 142 (732)
|..........|...++.+|||++||+|..+..++.. ...|+++|+++.++..++.+.. ...+.
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~l~~a~~~~~-----~~~~~ 90 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-----------GSQVTALDLSPPMLAQARQKDA-----ADHYL 90 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhCC-----CCCEE
Confidence 4444444444455567789999999999988877542 3689999999999887766432 22345
Q ss_pred ecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004763 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (732)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl 222 (732)
..|+..+|. ....||.|++..+ + .|.. ....+|.++.
T Consensus 91 ~~d~~~~~~---------------------~~~~fD~V~s~~~------l--------~~~~--------d~~~~l~~~~ 127 (251)
T PRK10258 91 AGDIESLPL---------------------ATATFDLAWSNLA------V--------QWCG--------NLSTALRELY 127 (251)
T ss_pred EcCcccCcC---------------------CCCcEEEEEECch------h--------hhcC--------CHHHHHHHHH
Confidence 666655431 1257999997432 1 1211 1246789999
Q ss_pred hhccCCCEEEEEcCC
Q 004763 223 SLLKVGGRIVYSTCS 237 (732)
Q Consensus 223 ~lLKpGGrLVYSTCS 237 (732)
++|||||.++++|-.
T Consensus 128 ~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 128 RVVRPGGVVAFTTLV 142 (251)
T ss_pred HHcCCCeEEEEEeCC
Confidence 999999999998643
No 92
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.55 E-value=4.6e-07 Score=94.66 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=77.6
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+.+.++.+|||+|||+|..+..+++.. +.+.|+++|+++.++..++.+. +++.+...|+..++.
T Consensus 26 ~~~~~~~~~vLDiGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~- 90 (258)
T PRK01683 26 RVPLENPRYVVDLGCGPGNSTELLVERW---------PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP- 90 (258)
T ss_pred hCCCcCCCEEEEEcccCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC-
Confidence 4566789999999999999999998763 3579999999999988776542 456667777654321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
...||.|++... +. |-+ .+.+++.++.+.|||||+++
T Consensus 91 ---------------------~~~fD~v~~~~~------l~--------~~~--------d~~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 91 ---------------------PQALDLIFANAS------LQ--------WLP--------DHLELFPRLVSLLAPGGVLA 127 (258)
T ss_pred ---------------------CCCccEEEEccC------hh--------hCC--------CHHHHHHHHHHhcCCCcEEE
Confidence 147999998532 11 111 13568999999999999998
Q ss_pred EEc
Q 004763 233 YST 235 (732)
Q Consensus 233 YST 235 (732)
.++
T Consensus 128 ~~~ 130 (258)
T PRK01683 128 VQM 130 (258)
T ss_pred EEC
Confidence 863
No 93
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.54 E-value=2.5e-07 Score=102.90 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=79.9
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
++.+|||++||+|..++.++...+ ...|+|||+++..++.+++|++.++..++.+.+.|+..+..
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~---------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~------ 121 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG---------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH------ 121 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC---------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh------
Confidence 357999999999999999876532 24899999999999999999999999888889998865421
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
. ...||.|++||| |.+ ...|..|++.+++||.|.+|
T Consensus 122 -------------~--~~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 122 -------------E--ERKFDVVDIDPF--GSP------------------------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -------------h--cCCCCEEEECCC--CCc------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 0 246999999998 332 13577788899997765554
No 94
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.53 E-value=2.2e-07 Score=103.09 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=81.2
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
+-+|||++||+|.-++.++....+ ...|++||+++..+..+++|++.++..++.+++.|+..+..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~g--------a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~------- 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEG--------VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR------- 109 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCC--------CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------
Confidence 458999999999999998765321 35899999999999999999999988889999999876421
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
.....||+|.+||+ |.. ...|..|++.++.||.| |.|||
T Consensus 110 -------------~~~~~fDvIdlDPf--Gs~------------------------~~fld~al~~~~~~glL-~vTaT 148 (374)
T TIGR00308 110 -------------YRNRKFHVIDIDPF--GTP------------------------APFVDSAIQASAERGLL-LVTAT 148 (374)
T ss_pred -------------HhCCCCCEEEeCCC--CCc------------------------HHHHHHHHHhcccCCEE-EEEec
Confidence 01246999999997 211 13678899999998765 44554
No 95
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.52 E-value=1.9e-06 Score=93.86 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=76.2
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPG 151 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~fp~ 151 (732)
.+++.+|.+|||++||+|..+..++.. + .+.|+++|.+...+.......+..+ ..++.+...++..+|.
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~-g---------~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGA-G---------AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHc-C---------CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 345567899999999999999988775 1 3479999999877654333323333 2467777777666542
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
...||.|+| .|++.+..+ ...+|+++.+.|+|||++
T Consensus 187 ----------------------~~~FD~V~s------~~vl~H~~d----------------p~~~L~~l~~~LkpGG~l 222 (322)
T PRK15068 187 ----------------------LKAFDTVFS------MGVLYHRRS----------------PLDHLKQLKDQLVPGGEL 222 (322)
T ss_pred ----------------------cCCcCEEEE------CChhhccCC----------------HHHHHHHHHHhcCCCcEE
Confidence 257999996 233322111 135788999999999999
Q ss_pred EEEcC
Q 004763 232 VYSTC 236 (732)
Q Consensus 232 VYSTC 236 (732)
|.+|-
T Consensus 223 vl~~~ 227 (322)
T PRK15068 223 VLETL 227 (322)
T ss_pred EEEEE
Confidence 98764
No 96
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.51 E-value=7.1e-07 Score=95.13 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=80.1
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH 148 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~ 148 (732)
....|+++||++|||++||-|+.+..+++..+ ..|+++.+|..-...++.++++.|+. .+.|...|...
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g----------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG----------CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH------------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC----------cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 34567899999999999999999999998752 58999999999999999999999976 47777776554
Q ss_pred CCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004763 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (732)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (732)
++ .+||+|++ -|++-+-. +..-...+.++.++||||
T Consensus 124 ~~------------------------~~fD~IvS------i~~~Ehvg--------------~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 124 LP------------------------GKFDRIVS------IEMFEHVG--------------RKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp ---------------------------S-SEEEE------ESEGGGTC--------------GGGHHHHHHHHHHHSETT
T ss_pred cC------------------------CCCCEEEE------EechhhcC--------------hhHHHHHHHHHHHhcCCC
Confidence 32 37999985 23332211 112245688899999999
Q ss_pred CEEEEEcCCC
Q 004763 229 GRIVYSTCSM 238 (732)
Q Consensus 229 GrLVYSTCSl 238 (732)
|+++.-+++.
T Consensus 160 G~~~lq~i~~ 169 (273)
T PF02353_consen 160 GRLVLQTITH 169 (273)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEeccc
Confidence 9998765554
No 97
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.51 E-value=3.5e-07 Score=79.16 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=69.2
Q ss_pred EeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCC
Q 004763 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSAS 162 (732)
Q Consensus 83 LDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~ 162 (732)
||++||+|..+..+++. + ...|+++|+++..++.++++.+. .++.+...|+..+|.
T Consensus 1 LdiG~G~G~~~~~l~~~-~---------~~~v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~l~~----------- 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G---------GASVTGIDISEEMLEQARKRLKN---EGVSFRQGDAEDLPF----------- 56 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T---------TCEEEEEES-HHHHHHHHHHTTT---STEEEEESBTTSSSS-----------
T ss_pred CEecCcCCHHHHHHHhc-c---------CCEEEEEeCCHHHHHHHHhcccc---cCchheeehHHhCcc-----------
Confidence 89999999999999886 2 47999999999999888775543 334577888777642
Q ss_pred ccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 163 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 163 ~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
....||.|++-- .|..+ ..+.++++++.++|||||+++.
T Consensus 57 ----------~~~sfD~v~~~~-------------~~~~~---------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 ----------PDNSFDVVFSNS-------------VLHHL---------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----------TT-EEEEEEES-------------HGGGS---------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------cccccccccccc-------------ceeec---------cCHHHHHHHHHHHcCcCeEEeC
Confidence 237899999721 11111 3567899999999999999974
No 98
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.50 E-value=1.3e-06 Score=90.62 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=81.3
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~ 155 (732)
.++.+|||++||+|..+..++..+.. |.+.|+++|+++..+..++++++..+. .++.+...|+..++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ-------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----
Confidence 57889999999999999999887532 468999999999999999998887654 467888888766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEEEEE
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~-~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
..+|.|++.-. +. .++ .....++.++.+.|||||+++.+
T Consensus 121 -------------------~~~d~v~~~~~------l~---------------~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 -------------------KNASMVILNFT------LQ---------------FLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred -------------------CCCCEEeeecc------hh---------------hCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 34787775211 10 011 12357899999999999999987
Q ss_pred c
Q 004763 235 T 235 (732)
Q Consensus 235 T 235 (732)
.
T Consensus 161 d 161 (239)
T TIGR00740 161 E 161 (239)
T ss_pred e
Confidence 4
No 99
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.50 E-value=5.8e-07 Score=94.11 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=74.6
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+.+.++.+|||++||+|..+..|+... |.+.|+++|+++..+..++.. ++.+...|+..++.
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~---------p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-- 86 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRW---------PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP-- 86 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC--
Confidence 456788999999999999999888763 357899999999988876541 35666777655321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
...||.|++... + .|-+ .+.+++.++.+.|||||+++.
T Consensus 87 --------------------~~~fD~v~~~~~------l--------~~~~--------d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 87 --------------------KPDTDVVVSNAA------L--------QWVP--------EHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred --------------------CCCceEEEEehh------h--------hhCC--------CHHHHHHHHHHhCCCCcEEEE
Confidence 257999998432 1 1111 135688999999999999997
Q ss_pred E
Q 004763 234 S 234 (732)
Q Consensus 234 S 234 (732)
+
T Consensus 125 ~ 125 (255)
T PRK14103 125 Q 125 (255)
T ss_pred E
Confidence 6
No 100
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.49 E-value=1.8e-06 Score=93.83 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=75.6
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGC 152 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~fp~~ 152 (732)
+++.+|.+|||++||+|..+..++.. ....|+++|.+...+..+....+..+ ..++.+...+...+|.
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~----------g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~- 185 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGH----------GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE- 185 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHc----------CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-
Confidence 46778999999999999988777653 13589999999987765433222222 2345555555544331
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
...||.|+| .|++-+.++. ...|..+.+.|||||+||
T Consensus 186 ---------------------~~~FD~V~s------~gvL~H~~dp----------------~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 186 ---------------------LYAFDTVFS------MGVLYHRKSP----------------LEHLKQLKHQLVIKGELV 222 (314)
T ss_pred ---------------------CCCcCEEEE------cchhhccCCH----------------HHHHHHHHHhcCCCCEEE
Confidence 146999997 3444322211 357888999999999999
Q ss_pred EEcCCCCC
Q 004763 233 YSTCSMNP 240 (732)
Q Consensus 233 YSTCSlnp 240 (732)
.+|..+..
T Consensus 223 letl~i~g 230 (314)
T TIGR00452 223 LETLVIDG 230 (314)
T ss_pred EEEEEecC
Confidence 98865543
No 101
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=5.1e-07 Score=91.99 Aligned_cols=139 Identities=21% Similarity=0.202 Sum_probs=90.8
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
+++|++|+|+||||||++..++..++. +|.|+|+|+.+-.. .+++.+..+|...-+...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~--------~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~-- 101 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGA--------GGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLE-- 101 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCC--------CCcEEEEECccccc-----------CCCceEEeeeccCccHHH--
Confidence 467999999999999999999998764 57899999955332 356777777766522110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.. ........+|.|++|+--.-.|+. +... .....+-...+.-|...|++||.+|.
T Consensus 102 ~l-----------~~~l~~~~~DvV~sD~ap~~~g~~----------~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~-- 157 (205)
T COG0293 102 KL-----------LEALGGAPVDVVLSDMAPNTSGNR----------SVDH-ARSMYLCELALEFALEVLKPGGSFVA-- 157 (205)
T ss_pred HH-----------HHHcCCCCcceEEecCCCCcCCCc----------cccH-HHHHHHHHHHHHHHHHeeCCCCeEEE--
Confidence 00 001122457999999754444532 1111 12233445567778889999999984
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEE
Q 004763 236 CSMNPVENEAVVAEILRKCEGSVEL 260 (732)
Q Consensus 236 CSlnp~ENEaVV~~~L~~~~~~vel 260 (732)
....-+++..+-..++++=..++.
T Consensus 158 -K~fqg~~~~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 158 -KVFQGEDFEDLLKALRRLFRKVKI 181 (205)
T ss_pred -EEEeCCCHHHHHHHHHHhhceeEE
Confidence 556668887777778765334433
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.49 E-value=1.3e-06 Score=74.79 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=77.9
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
+|||+|||+|..+.+++. . +...++++|.++..+..+.+........++.+...|...+..
T Consensus 1 ~ildig~G~G~~~~~~~~--~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS--G--------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc--C--------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---------
Confidence 489999999999888876 1 257999999999999888765444455667777776655321
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
.....||.|+++.+|... ...+..++..+.++|++||.++++
T Consensus 62 -----------~~~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 -----------EADESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----------ccCCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 112579999999886642 245567889999999999999886
No 103
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.49 E-value=3.7e-07 Score=100.91 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~f 149 (732)
+.+|||+|||+|..++.++.. ...|+|+|+++..+..+++|++.++..|+.+.+.|+..+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-----------~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-----------FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-----------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 357999999999999977664 358999999999999999999999998999999998764
No 104
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.3e-06 Score=91.62 Aligned_cols=134 Identities=25% Similarity=0.425 Sum_probs=99.6
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP 150 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp 150 (732)
..|++.||.+||..+.|+||.+..|+..++ |+|+|+.+|....|.+.+.+-.++.+.+ |+.++.-|...--
T Consensus 99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~--------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 99 SMLEIRPGSVVLESGTGSGSLSHAIARAVA--------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHhcCCCCCEEEecCCCcchHHHHHHHhhC--------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 468999999999999999999999999985 6899999999999999999999999874 6777777655411
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC-
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG- 229 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGG- 229 (732)
. ......+|.|++|.| +| | ..+-+|+..||.+|
T Consensus 171 F-------------------~~ks~~aDaVFLDlP---------aP-----w-------------~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 171 F-------------------LIKSLKADAVFLDLP---------AP-----W-------------EAIPHAAKILKDEGG 204 (314)
T ss_pred c-------------------cccccccceEEEcCC---------Ch-----h-------------hhhhhhHHHhhhcCc
Confidence 0 111478999999998 22 2 23556777888776
Q ss_pred EEEEEcCCCCC-cCcHHHHHHHHHHCCC-cEEEEec
Q 004763 230 RIVYSTCSMNP-VENEAVVAEILRKCEG-SVELVDV 263 (732)
Q Consensus 230 rLVYSTCSlnp-~ENEaVV~~~L~~~~~-~velvd~ 263 (732)
+| ||++| +|--+--.++|++++. +++.+++
T Consensus 205 r~----csFSPCIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 205 RL----CSFSPCIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred eE----EeccHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 55 67766 3444555666777652 4555554
No 105
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.48 E-value=1.7e-06 Score=98.59 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=87.1
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+.++++.+|||+|||+|..+..|+... ...|+|+|+++..+..+++++...+ .++.+...|+...+
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~----------~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~--- 327 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENF----------DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT--- 327 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC---
Confidence 456789999999999999988887753 3589999999999998887765332 35677777765432
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
.....||.|++. +++.+.++ ..+++.++.++|||||+|+.
T Consensus 328 ------------------~~~~~fD~I~s~------~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 328 ------------------YPDNSFDVIYSR------DTILHIQD----------------KPALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred ------------------CCCCCEEEEEEC------CcccccCC----------------HHHHHHHHHHHcCCCeEEEE
Confidence 112579999972 22322221 24688999999999999998
Q ss_pred EcCCCCCcCcHHHHHHHHHHC
Q 004763 234 STCSMNPVENEAVVAEILRKC 254 (732)
Q Consensus 234 STCSlnp~ENEaVV~~~L~~~ 254 (732)
++-...+..-.......+...
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~ 388 (475)
T PLN02336 368 SDYCRSPGTPSPEFAEYIKQR 388 (475)
T ss_pred EEeccCCCCCcHHHHHHHHhc
Confidence 865544332223334445444
No 106
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.48 E-value=3.4e-07 Score=94.87 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=76.3
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
-+|.+|||++||-|..+.-||.+ ...|+|+|++++.++.++..+...|.. +......+..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-----------Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~ed-------- 117 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-----------GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVED-------- 117 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-----------CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHH--------
Confidence 47999999999999988888776 478999999999999999888777653 1111111111
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
......+||.|+| .-++.+-|+. ..+++.+.+++||||.++.||-
T Consensus 118 -------------l~~~~~~FDvV~c------mEVlEHv~dp----------------~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 118 -------------LASAGGQFDVVTC------MEVLEHVPDP----------------ESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred -------------HHhcCCCccEEEE------hhHHHccCCH----------------HHHHHHHHHHcCCCcEEEEecc
Confidence 1112268999998 2333333332 3489999999999999999975
Q ss_pred C
Q 004763 237 S 237 (732)
Q Consensus 237 S 237 (732)
.
T Consensus 163 n 163 (243)
T COG2227 163 N 163 (243)
T ss_pred c
Confidence 4
No 107
>PHA03412 putative methyltransferase; Provisional
Probab=98.47 E-value=7.7e-07 Score=92.68 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
..+.+|||+|||+|..+..++..+... +...|+|+|+|+..+..++.++ .++.+.+.|+..++.
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~------~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~----- 111 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYA------KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF----- 111 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccC------CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-----
Confidence 347899999999999999998865321 2468999999999999888764 346677777654321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
..+||.|+++||..-... ..+ .....-..+-.+++.+|.+++++|+.|+.
T Consensus 112 -----------------~~~FDlIIsNPPY~~~~~--------~d~--~ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 112 -----------------DTLFDMAISNPPFGKIKT--------SDF--KGKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred -----------------cCCccEEEECCCCCCccc--------ccc--CCcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 157999999999765331 111 11111234556789999998888776553
No 108
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.6e-06 Score=93.04 Aligned_cols=127 Identities=23% Similarity=0.253 Sum_probs=91.2
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
+++|.+|||++||+|-.+..++.+ +...|+|+|+|+..+...++|+.++++.... + +..|...
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL----------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~---~-~~~~~~~--- 222 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL----------GAKKVVGVDIDPQAVEAARENARLNGVELLV---Q-AKGFLLL--- 222 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc----------CCceEEEecCCHHHHHHHHHHHHHcCCchhh---h-cccccch---
Confidence 468999999999999987766554 3578999999999999999999999876411 0 1111110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.......||.|+++ -|+..-.+++....++|||||+++.|=
T Consensus 223 --------------~~~~~~~~DvIVAN-------------------------ILA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 223 --------------EVPENGPFDVIVAN-------------------------ILAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --------------hhcccCcccEEEeh-------------------------hhHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 11223689999983 255566688899999999999999984
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004763 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 236 CSlnp~ENEaVV~~~L~~~~~~velvd~ 263 (732)
+.-.. +..|.+++.+.+ ++++++
T Consensus 264 --Il~~q-~~~V~~a~~~~g--f~v~~~ 286 (300)
T COG2264 264 --ILEDQ-AESVAEAYEQAG--FEVVEV 286 (300)
T ss_pred --ehHhH-HHHHHHHHHhCC--CeEeEE
Confidence 55545 556666665544 556554
No 109
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.47 E-value=1.4e-06 Score=92.08 Aligned_cols=110 Identities=13% Similarity=0.117 Sum_probs=79.7
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+++.|+.+|||+|||.|..+..|+... .+.|+++|+++..+..++.+... ..++.+...|+...|
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~----------~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~-- 112 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKY----------GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD-- 112 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhc----------CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC--
Confidence 4678899999999999999988887542 36899999999999988876543 246777777765432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~-DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
.....||.|++ ++- ..+. .....++|+++.++|||||+|
T Consensus 113 -------------------~~~~~FD~V~s~~~l--------------~h~~-------~~d~~~~l~~i~r~LkPGG~l 152 (263)
T PTZ00098 113 -------------------FPENTFDMIYSRDAI--------------LHLS-------YADKKKLFEKCYKWLKPNGIL 152 (263)
T ss_pred -------------------CCCCCeEEEEEhhhH--------------HhCC-------HHHHHHHHHHHHHHcCCCcEE
Confidence 11267999997 110 0000 013457899999999999999
Q ss_pred EEEcC
Q 004763 232 VYSTC 236 (732)
Q Consensus 232 VYSTC 236 (732)
+.+..
T Consensus 153 vi~d~ 157 (263)
T PTZ00098 153 LITDY 157 (263)
T ss_pred EEEEe
Confidence 98643
No 110
>PLN02672 methionine S-methyltransferase
Probab=98.47 E-value=2e-06 Score=105.84 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=102.9
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC----------------CceEEE
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT----------------ANLIVT 142 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~----------------~ni~Vt 142 (732)
+.+|||+|||+|..+..++... +.+.|+|+|+++..+..+.+|+++++. .++.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~---------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~ 189 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW---------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY 189 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence 4689999999999999998864 347999999999999999999998643 246777
Q ss_pred ecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc------------ccc---
Q 004763 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV------------GLG--- 207 (732)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~------------~~~--- 207 (732)
+.|...... ....+||+|+++||.-..+-+..-+...+.+.| -.+
T Consensus 190 ~sDl~~~~~--------------------~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~ 249 (1082)
T PLN02672 190 ESDLLGYCR--------------------DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVE 249 (1082)
T ss_pred ECchhhhcc--------------------ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCC
Confidence 776543110 001369999999998877754322111122211 111
Q ss_pred -cchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 208 -NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 208 -~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
..-..+.++|+..|.++|+|||.|+. -+.....++|..+++++.+
T Consensus 250 g~dGL~~yr~i~~~a~~~L~pgG~l~l---EiG~~q~~~v~~~l~~~~g 295 (1082)
T PLN02672 250 DQFGLGLIARAVEEGISVIKPMGIMIF---NMGGRPGQAVCERLFERRG 295 (1082)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCEEEE---EECccHHHHHHHHHHHHCC
Confidence 23345778999999999999998874 5666677777766777655
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.46 E-value=1.2e-06 Score=94.43 Aligned_cols=123 Identities=23% Similarity=0.303 Sum_probs=84.9
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
..+|.+|||++||+|-.+..++. ++ .+.|+|+|+|+..+..+++|++.+++..-..+ .....+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~k-lG---------A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~~~~~~------ 221 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAK-LG---------AKKVVAIDIDPLAVEAARENAELNGVEDRIEV-SLSEDL------ 221 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHH-TT---------BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-SCTSCT------
T ss_pred ccCCCEEEEeCCcHHHHHHHHHH-cC---------CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-EEeccc------
Confidence 47889999999999987766544 33 47899999999999999999999997652222 211111
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
...+||.|+++- +...-..++....++|+|||+++.|
T Consensus 222 -----------------~~~~~dlvvANI-------------------------~~~vL~~l~~~~~~~l~~~G~lIlS- 258 (295)
T PF06325_consen 222 -----------------VEGKFDLVVANI-------------------------LADVLLELAPDIASLLKPGGYLILS- 258 (295)
T ss_dssp -----------------CCS-EEEEEEES--------------------------HHHHHHHHHHCHHHEEEEEEEEEE-
T ss_pred -----------------ccccCCEEEECC-------------------------CHHHHHHHHHHHHHhhCCCCEEEEc-
Confidence 127899999832 3345566777888899999999986
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004763 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 236 CSlnp~ENEaVV~~~L~~~~~~velvd~ 263 (732)
-+...+.+.|+ +++++ + +++++.
T Consensus 259 -GIl~~~~~~v~-~a~~~-g--~~~~~~ 281 (295)
T PF06325_consen 259 -GILEEQEDEVI-EAYKQ-G--FELVEE 281 (295)
T ss_dssp -EEEGGGHHHHH-HHHHT-T--EEEEEE
T ss_pred -cccHHHHHHHH-HHHHC-C--CEEEEE
Confidence 55555666665 45554 3 666553
No 112
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.45 E-value=1.8e-07 Score=92.69 Aligned_cols=142 Identities=27% Similarity=0.284 Sum_probs=76.5
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
++..+.+|||+||||||+|..+++..+ +.+.|+|+|+.+.. ...++....+|........
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~--------~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~- 79 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGG--------PAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIK- 79 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTT--------TEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSH-
T ss_pred CcccccEEEEcCCcccceeeeeeeccc--------ccceEEEEeccccc-----------cccceeeeecccchhhHHH-
Confidence 444569999999999999999987642 36999999996651 1133444344433211100
Q ss_pred CCCCCCCCccccccccccccccccEEEecC--CCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDV--PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv--PCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
.. ..-.......||.|+||+ +|+|+... + ......+....|.-|+++|++||.+|
T Consensus 80 -~i---------~~~~~~~~~~~dlv~~D~~~~~~g~~~~----d---------~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 80 -DI---------RKLLPESGEKFDLVLSDMAPNVSGDRNI----D---------EFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp -HG---------GGSHGTTTCSESEEEE-------SSHHS----S---------HHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred -hh---------hhhccccccCcceeccccccCCCCchhh----H---------HHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 00 000001125899999998 55554211 1 11233566677778889999999888
Q ss_pred EEcCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004763 233 YSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (732)
Q Consensus 233 YSTCSlnp~ENEaVV~~~L~~~~~~velvd 262 (732)
--+-... +.+.++.. |+.+-..+.++.
T Consensus 137 ~K~~~~~--~~~~~~~~-l~~~F~~v~~~K 163 (181)
T PF01728_consen 137 IKVFKGP--EIEELIYL-LKRCFSKVKIVK 163 (181)
T ss_dssp EEESSST--TSHHHHHH-HHHHHHHEEEEE
T ss_pred EEeccCc--cHHHHHHH-HHhCCeEEEEEE
Confidence 6554422 22444444 333212355544
No 113
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.45 E-value=1.3e-06 Score=87.49 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=83.0
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFP 150 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp 150 (732)
.+.++++|+.|||-|||+|+..+..+.+..+...........+++.|++++.+..++.|++..|... +.+.+.|+..++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 4557899999999999999998887766543100000002249999999999999999999999764 677888888865
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
. ....||.|++|||. |. .......+..+..++++.+.+.|++ +
T Consensus 102 ~---------------------~~~~~d~IvtnPPy---G~-----------r~~~~~~~~~ly~~~~~~~~~~l~~--~ 144 (179)
T PF01170_consen 102 L---------------------PDGSVDAIVTNPPY---GR-----------RLGSKKDLEKLYRQFLRELKRVLKP--R 144 (179)
T ss_dssp G---------------------TTSBSCEEEEE--S---TT-----------SHCHHHHHHHHHHHHHHHHHCHSTT--C
T ss_pred c---------------------ccCCCCEEEECcch---hh-----------hccCHHHHHHHHHHHHHHHHHHCCC--C
Confidence 1 12579999999993 21 1112234567888999999999999 4
Q ss_pred EEEEcCC
Q 004763 231 IVYSTCS 237 (732)
Q Consensus 231 LVYSTCS 237 (732)
+|+-|++
T Consensus 145 ~v~l~~~ 151 (179)
T PF01170_consen 145 AVFLTTS 151 (179)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 4444443
No 114
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.44 E-value=5.7e-07 Score=80.66 Aligned_cols=101 Identities=24% Similarity=0.266 Sum_probs=71.7
Q ss_pred EEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCC
Q 004763 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSA 161 (732)
Q Consensus 82 VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~ 161 (732)
|||+|||+|..+..++..+.. .+...++++|+|+..+..++++.+..+. ++.+...|+..++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~------~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~---------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA------GPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF---------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH----------
T ss_pred CEEeecCCcHHHHHHHHHhhh------cccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc----------
Confidence 799999999999999988621 1347999999999999999999887665 67788888876432
Q ss_pred CccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004763 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (732)
....||.|+| ++.. +.. --...+.+++++..++|||||
T Consensus 64 -----------~~~~~D~v~~----~~~~-~~~--------------~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 -----------SDGKFDLVVC----SGLS-LHH--------------LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -----------HSSSEEEEEE-----TTG-GGG--------------SSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------cCCCeeEEEE----cCCc-cCC--------------CCHHHHHHHHHHHHHHhCCCC
Confidence 2368999997 2211 110 011345789999999999998
No 115
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.44 E-value=8.4e-07 Score=95.37 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=93.1
Q ss_pred cccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004763 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (732)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl 134 (732)
.+.|.++--...+.+.+.++++.++++|||.|||+|+..+.+.+.+.... .......++|+|+++..+.++.-++.-.
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~--~~~~~~~i~G~ei~~~~~~la~~nl~l~ 100 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKR--NKIKEINIYGIEIDPEAVALAKLNLLLH 100 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCH--HHHCCEEEEEEES-HHHHHHHHHHHHHT
T ss_pred cccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccc--cccccceeEeecCcHHHHHHHHhhhhhh
Confidence 34577766666666777788999999999999999999998888652100 0013578999999999999888776544
Q ss_pred CC--CceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHH
Q 004763 135 CT--ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHS 212 (732)
Q Consensus 135 g~--~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~ 212 (732)
+. .+..+...|...-+. ......||.||++||-+..+........-.+|... ...-..
T Consensus 101 ~~~~~~~~i~~~d~l~~~~-------------------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~-~~~~~~ 160 (311)
T PF02384_consen 101 GIDNSNINIIQGDSLENDK-------------------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY-FPPKSN 160 (311)
T ss_dssp THHCBGCEEEES-TTTSHS-------------------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTC-SSSTTE
T ss_pred ccccccccccccccccccc-------------------cccccccccccCCCCcccccccccccccccccccc-CCCccc
Confidence 43 233455665433111 01136899999999988763311000000122211 111112
Q ss_pred HHHHHHHHHHhhccCCCEEEEEcC
Q 004763 213 LQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 213 lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
.+...+.+++++|++||++++..-
T Consensus 161 ~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 161 AEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhHHHHHhhcccccceeEEec
Confidence 334578899999999999877644
No 116
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.43 E-value=9e-07 Score=97.58 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=52.6
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~f 149 (732)
.+|||+|||+|..+..|+.. ...|+|+|+++..+..+++|++.+++.++.+...|+..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-----------~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-----------FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 47999999999999987765 258999999999999999999999998999999988764
No 117
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.43 E-value=1.4e-06 Score=87.72 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=64.9
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~~ 156 (732)
.|.+|||+|||+|+..+.++.. ....++.+|.|.+.+..|++|++.++. .+..+...|+..+....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR----------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~--- 109 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR----------GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL--- 109 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC----------CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc---
Confidence 5889999999999988876553 367999999999999999999999994 56788888887542210
Q ss_pred CCCCCCccccccccccccccccEEEecCCCC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS 187 (732)
.....||.|++|||.-
T Consensus 110 ---------------~~~~~FDlVflDPPy~ 125 (187)
T COG0742 110 ---------------GTREPFDLVFLDPPYA 125 (187)
T ss_pred ---------------CCCCcccEEEeCCCCc
Confidence 1113599999999944
No 118
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.42 E-value=2.3e-06 Score=86.42 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=75.2
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+.+.++.+|||++||.|..+..|++. .+.|+|+|+++..+..+.+++...+.. +.+...|...++
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~-----------g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~-- 90 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA-----------GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA-- 90 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc--
Confidence 344455679999999999999998864 368999999999999999888777664 444445543221
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~-~lQ~~IL~rAl~lLKpGGrL 231 (732)
. ...||.|++-.. +. .++ .....++..+.++|||||++
T Consensus 91 -------------------~-~~~fD~I~~~~~------~~---------------~~~~~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 91 -------------------L-NEDYDFIFSTVV------FM---------------FLQAGRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred -------------------c-cCCCCEEEEecc------cc---------------cCCHHHHHHHHHHHHHHhCCCcEE
Confidence 0 146999987322 10 011 12346889999999999996
Q ss_pred EEE
Q 004763 232 VYS 234 (732)
Q Consensus 232 VYS 234 (732)
+..
T Consensus 130 li~ 132 (195)
T TIGR00477 130 LIV 132 (195)
T ss_pred EEE
Confidence 554
No 119
>PLN03075 nicotianamine synthase; Provisional
Probab=98.39 E-value=2.5e-06 Score=91.67 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=83.0
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCC-ceEEEecccccCCCCccC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTA-NLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR-lg~~-ni~Vt~~Da~~fp~~~~~ 155 (732)
+..+|+|++||||+.|+.++..-+ .|+|.++++|+|++++..+++.+++ .+.. ++.+..+|+...+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~---- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE---- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc----
Confidence 678999999999998887665433 2578999999999999999999865 6664 58888888876321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
....||.|+|++ +- .|.+ ..+.++|.+..+.|+|||.+++=+
T Consensus 192 -----------------~l~~FDlVF~~A-Li-------------~~dk-------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 -----------------SLKEYDVVFLAA-LV-------------GMDK-------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -----------------ccCCcCEEEEec-cc-------------cccc-------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 025799999973 11 1111 234689999999999999999854
No 120
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.39 E-value=1.6e-06 Score=87.52 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~~~ 156 (732)
.|.+|||+|||+|+.++.++.. ....|+++|.++..+..+++|++.++.. ++.+.+.|+..+... +
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr----------ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~-~-- 115 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR----------GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF-L-- 115 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH-h--
Confidence 4789999999999999888764 1358999999999999999999999875 688888888553210 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS 187 (732)
......||.|++|||..
T Consensus 116 --------------~~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 116 --------------AKKPTFDNVIYLDPPFF 132 (189)
T ss_pred --------------hccCCCceEEEECcCCC
Confidence 00113489999999964
No 121
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.36 E-value=3.7e-06 Score=85.64 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=82.9
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPG 151 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~ 151 (732)
.+.+.++.+|||+|||+|..+..++..+. ....|+++|+++.++..++.++...+. .++.+...|+..++.
T Consensus 46 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~--------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 46 WLGVRPGDKVLDLACGTGDLAIALAKAVG--------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HhCCCCCCeEEEeCCCCCHHHHHHHHHcC--------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 45567889999999999999999988752 147899999999999999888766443 356777777665331
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
....||.|++.- .+...+ ....+|..+.++|++||++
T Consensus 118 ---------------------~~~~~D~I~~~~------~l~~~~----------------~~~~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 118 ---------------------PDNSFDAVTIAF------GLRNVP----------------DIDKALREMYRVLKPGGRL 154 (239)
T ss_pred ---------------------CCCCccEEEEec------ccccCC----------------CHHHHHHHHHHhccCCcEE
Confidence 125799998621 111111 1246788999999999999
Q ss_pred EEEcCCC
Q 004763 232 VYSTCSM 238 (732)
Q Consensus 232 VYSTCSl 238 (732)
++++.+.
T Consensus 155 i~~~~~~ 161 (239)
T PRK00216 155 VILEFSK 161 (239)
T ss_pred EEEEecC
Confidence 9875544
No 122
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.35 E-value=3.9e-07 Score=93.22 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=86.2
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC-
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP- 150 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp- 150 (732)
+.....-.+||.++++.|.-|+.||+.+.. .|.|+++|.++++...++.++++.|.. .+.+..+||..+.
T Consensus 40 l~~~~~~k~vLEIGt~~GySal~la~~l~~--------~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTFTGYSALWLAEALPE--------DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHT-SEEEEESTTTSHHHHHHHHTSTT--------TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred HHHhcCCceEEEeccccccHHHHHHHhhcc--------cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence 333445669999999999999999998753 699999999999999999999999974 6899999987632
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
.+. .......||.|++|+. + ..+...+..++++|++||.
T Consensus 112 ~l~----------------~~~~~~~fD~VFiDa~--------------K-----------~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 112 ELA----------------NDGEEGQFDFVFIDAD--------------K-----------RNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp HHH----------------HTTTTTSEEEEEEEST--------------G-----------GGHHHHHHHHHHHEEEEEE
T ss_pred HHH----------------hccCCCceeEEEEccc--------------c-----------cchhhHHHHHhhhccCCeE
Confidence 110 0011257999999985 0 1234567778899999999
Q ss_pred EEEEcC
Q 004763 231 IVYSTC 236 (732)
Q Consensus 231 LVYSTC 236 (732)
||.--+
T Consensus 151 ii~DN~ 156 (205)
T PF01596_consen 151 IIADNV 156 (205)
T ss_dssp EEEETT
T ss_pred EEEccc
Confidence 987543
No 123
>PRK00811 spermidine synthase; Provisional
Probab=98.32 E-value=7.3e-06 Score=87.73 Aligned_cols=127 Identities=14% Similarity=0.114 Sum_probs=88.6
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecccccCCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHFPGC 152 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-----~~ni~Vt~~Da~~fp~~ 152 (732)
...+||++|+|.|+.+..++... +...|+++|+|+..++++++.+..++ .+++.+...|+..|..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~---------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~- 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP---------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA- 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC---------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-
Confidence 35699999999999988886531 24689999999999999999886543 3578889999877532
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
.....||.|++|.+- ..| + ..+-...++++.+.+.|++||.+|
T Consensus 146 -------------------~~~~~yDvIi~D~~d-p~~-------------~----~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 146 -------------------ETENSFDVIIVDSTD-PVG-------------P----AEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred -------------------hCCCcccEEEECCCC-CCC-------------c----hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 012679999999741 001 1 011234677888899999999998
Q ss_pred EEcCCCCCcCcHHHHHHHHHH
Q 004763 233 YSTCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 233 YSTCSlnp~ENEaVV~~~L~~ 253 (732)
..+-+ |......+..+++.
T Consensus 189 ~~~~~--~~~~~~~~~~i~~t 207 (283)
T PRK00811 189 AQSGS--PFYQADEIKDMHRK 207 (283)
T ss_pred EeCCC--cccCHHHHHHHHHH
Confidence 65333 33445555555554
No 124
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.31 E-value=3.3e-06 Score=94.17 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=78.2
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
..++++||++|||+|||.|+.+.+++... ...|+|+|+++..+..+++++..+ ++.+...|...+
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~----------g~~V~giDlS~~~l~~A~~~~~~l---~v~~~~~D~~~l-- 225 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHY----------GVSVVGVTISAEQQKLAQERCAGL---PVEIRLQDYRDL-- 225 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHHHhccC---eEEEEECchhhc--
Confidence 34678999999999999999999988753 358999999999999998877432 245555543321
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
...||+|++- +++.+-+ ......++..+.++|||||++
T Consensus 226 ----------------------~~~fD~Ivs~------~~~ehvg--------------~~~~~~~l~~i~r~LkpGG~l 263 (383)
T PRK11705 226 ----------------------NGQFDRIVSV------GMFEHVG--------------PKNYRTYFEVVRRCLKPDGLF 263 (383)
T ss_pred ----------------------CCCCCEEEEe------CchhhCC--------------hHHHHHHHHHHHHHcCCCcEE
Confidence 1569999862 2221110 011245788899999999999
Q ss_pred EEEcCCC
Q 004763 232 VYSTCSM 238 (732)
Q Consensus 232 VYSTCSl 238 (732)
+.++.+.
T Consensus 264 vl~~i~~ 270 (383)
T PRK11705 264 LLHTIGS 270 (383)
T ss_pred EEEEccC
Confidence 9876543
No 125
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.30 E-value=1.9e-06 Score=85.14 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=57.6
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccCCCC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
..|||+|||-||-|.|+|... ..|+|+|+|+.|+++++||++-+|+ .++.++++|...+...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-----------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~------ 63 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-----------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR------ 63 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG------
T ss_pred CEEEEeccCcCHHHHHHHHhC-----------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh------
Confidence 369999999999999998862 4799999999999999999999995 5899999998764210
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCc
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (732)
... ...||.|+++||=.|-.-
T Consensus 64 -----------~~~-~~~~D~vFlSPPWGGp~Y 84 (163)
T PF09445_consen 64 -----------LKS-NKIFDVVFLSPPWGGPSY 84 (163)
T ss_dssp -----------B-------SEEEE---BSSGGG
T ss_pred -----------ccc-cccccEEEECCCCCCccc
Confidence 000 112899999999666443
No 126
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.30 E-value=2.9e-06 Score=87.57 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=94.7
Q ss_pred cccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEE
Q 004763 64 EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVT 142 (732)
Q Consensus 64 d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt 142 (732)
...-.+..+++...+..+||.++.+-|.-|+.||..+.. .|+++++|++++|...+++|+++.|+.+ +.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~--------~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~ 116 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPD--------DGRLTTIERDEERAEIARENLAEAGVDDRIELL 116 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC--------CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEE
Confidence 444445556677788999999999999999999998753 5899999999999999999999999876 5555
Q ss_pred e-cccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004763 143 N-HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (732)
Q Consensus 143 ~-~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rA 221 (732)
. +|+..... ......||.|++|+- ...+...+.++
T Consensus 117 ~~gdal~~l~-------------------~~~~~~fDliFIDad-------------------------K~~yp~~le~~ 152 (219)
T COG4122 117 LGGDALDVLS-------------------RLLDGSFDLVFIDAD-------------------------KADYPEYLERA 152 (219)
T ss_pred ecCcHHHHHH-------------------hccCCCccEEEEeCC-------------------------hhhCHHHHHHH
Confidence 5 46654211 012478999999873 12345678899
Q ss_pred HhhccCCCEEEEEcCCC
Q 004763 222 ISLLKVGGRIVYSTCSM 238 (732)
Q Consensus 222 l~lLKpGGrLVYSTCSl 238 (732)
+++|+|||.||.=---+
T Consensus 153 ~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 153 LPLLRPGGLIVADNVLF 169 (219)
T ss_pred HHHhCCCcEEEEeeccc
Confidence 99999999998643333
No 127
>PHA03411 putative methyltransferase; Provisional
Probab=98.30 E-value=1e-05 Score=86.19 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=92.5
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
++..++.+|||+|||+|..+..++... +...|+++|+++..+..+++++ +++.+.+.|+..+..
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~---------~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-- 123 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRC---------KPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-- 123 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc--
Confidence 355667899999999999888876652 1358999999999988876642 467778888765421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH-HHHHHHHHHhhccCCCEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL-QVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~l-Q~~IL~rAl~lLKpGGrLV 232 (732)
...||.|++|||.-....- ....|..|+- .......+ -.+.+..+-.+|+|+|.+.
T Consensus 124 --------------------~~kFDlIIsNPPF~~l~~~--d~~~~~~~~G-G~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 124 --------------------NEKFDVVISNPPFGKINTT--DTKDVFEYTG-GEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred --------------------cCCCcEEEEcCCccccCch--hhhhhhhhcc-CccccccccHHHHHhhhHheecCCceEE
Confidence 1579999999997653321 1112222321 11111122 2467888888999999653
Q ss_pred --EEcCCC-CCcCcHHHHHHHHHHCC
Q 004763 233 --YSTCSM-NPVENEAVVAEILRKCE 255 (732)
Q Consensus 233 --YSTCSl-np~ENEaVV~~~L~~~~ 255 (732)
||.=-+ +-.=..+-...+|+.+|
T Consensus 181 ~~yss~~~y~~sl~~~~y~~~l~~~g 206 (279)
T PHA03411 181 FAYSGRPYYDGTMKSNKYLKWSKQTG 206 (279)
T ss_pred EEEeccccccccCCHHHHHHHHHhcC
Confidence 665222 33334455577788775
No 128
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.29 E-value=6.8e-06 Score=87.88 Aligned_cols=102 Identities=19% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
++.+|||++||.|..+..++.. ...|+|+|+++..+..++++++..+. ++.+...|....+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-----------g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~------- 180 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-----------GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS------- 180 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc-------
Confidence 3449999999999999888764 36899999999999999999988877 6777666654321
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch-HHHHHHHHHHHHhhccCCCEEEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL-HSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L-~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
. ...||.|++-.. +. .+ ......++....++|+|||++++.
T Consensus 181 --------------~-~~~fD~I~~~~v------l~---------------~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 --------------I-QEEYDFILSTVV------LM---------------FLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred --------------c-cCCccEEEEcch------hh---------------hCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 0 267999997321 10 00 123457889999999999996653
No 129
>PRK04457 spermidine synthase; Provisional
Probab=98.28 E-value=8.7e-06 Score=86.28 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=83.8
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCCccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~fp~~~~~ 155 (732)
.++.+|||+|+|.|+.+..++... |...|+++|+|+..+..++++....+ .+++.+..+|+..|..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~---------p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~---- 131 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL---------PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA---- 131 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH----
Confidence 345689999999999998887763 46789999999999999888764333 3678888999876521
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.....||.|++|+- .+.+. |. +-...+++..+.+.|+|||+++...
T Consensus 132 ----------------~~~~~yD~I~~D~~-~~~~~----~~-------------~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 132 ----------------VHRHSTDVILVDGF-DGEGI----ID-------------ALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred ----------------hCCCCCCEEEEeCC-CCCCC----cc-------------ccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 01257999999963 22221 10 1113578899999999999999875
Q ss_pred CCC
Q 004763 236 CSM 238 (732)
Q Consensus 236 CSl 238 (732)
++-
T Consensus 178 ~~~ 180 (262)
T PRK04457 178 WSR 180 (262)
T ss_pred CCC
Confidence 544
No 130
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.26 E-value=7.1e-06 Score=82.71 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=79.1
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
..++.+|||+|||+|..+..++..+.. .+.++++|+++..+..+.++.. ...++.+..+|+..++.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~--------~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~---- 102 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPD--------RGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF---- 102 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCC--------CceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC----
Confidence 447899999999999999998876421 2789999999999998888765 33457777777766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
....||.|++.- .+...++ -..+++++.++|+|||+++..+
T Consensus 103 -----------------~~~~~D~i~~~~------~~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 103 -----------------EDNSFDAVTIAF------GLRNVTD----------------IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred -----------------CCCcEEEEEEee------eeCCccc----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 125799998621 1111111 1357899999999999999876
Q ss_pred CCC
Q 004763 236 CSM 238 (732)
Q Consensus 236 CSl 238 (732)
.+.
T Consensus 144 ~~~ 146 (223)
T TIGR01934 144 FSK 146 (223)
T ss_pred ecC
Confidence 553
No 131
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=6e-06 Score=88.12 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=87.8
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH 148 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~ 148 (732)
....|+++||++|||++||=|+.+..+|+.. ...|+++++|+.-+..++..++..|+. ++.+...|-..
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y----------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY----------GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHc----------CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 3456789999999999999999999999874 378999999999999999999999987 78887766544
Q ss_pred CCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004763 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (732)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (732)
+. ..||+|+. -|++.+ ... ..-...+.++.++|+||
T Consensus 134 ~~------------------------e~fDrIvS------vgmfEh-------vg~-------~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 134 FE------------------------EPFDRIVS------VGMFEH-------VGK-------ENYDDFFKKVYALLKPG 169 (283)
T ss_pred cc------------------------cccceeee------hhhHHH-------hCc-------ccHHHHHHHHHhhcCCC
Confidence 32 44999985 343211 111 12245788899999999
Q ss_pred CEEEEEcCC
Q 004763 229 GRIVYSTCS 237 (732)
Q Consensus 229 GrLVYSTCS 237 (732)
|+++.-|-+
T Consensus 170 G~~llh~I~ 178 (283)
T COG2230 170 GRMLLHSIT 178 (283)
T ss_pred ceEEEEEec
Confidence 999876444
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.24 E-value=8.1e-06 Score=80.34 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=65.2
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++.. ..++.+.++|+..++.
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~-----------~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~- 73 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLER-----------AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL- 73 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhc-----------CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc-
Confidence 456788999999999999999999775 36899999999999999887753 4578899999877542
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCC
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (732)
....||.|+.|+|.
T Consensus 74 --------------------~~~~~d~vi~n~Py 87 (169)
T smart00650 74 --------------------PKLQPYKVVGNLPY 87 (169)
T ss_pred --------------------cccCCCEEEECCCc
Confidence 11368999999994
No 133
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.23 E-value=1.2e-05 Score=86.50 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=85.2
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~ 151 (732)
.++..++.+|||+|||+|..+..+++.. |.+.++++|. +..+..+++++.+.|.. ++.+..+|+...+
T Consensus 144 ~~~~~~~~~vlDiG~G~G~~~~~~~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 144 EAKLDGVKKMIDVGGGIGDISAAMLKHF---------PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred HcCCCCCCEEEEeCCchhHHHHHHHHHC---------CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 4567889999999999999999888773 4678999997 78889999999888864 5778888765311
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
...+|.|++ + + +...|.. ..-.+||+++.+.|+|||+|
T Consensus 213 ----------------------~~~~D~v~~----~--~-------~lh~~~~-------~~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 213 ----------------------YPEADAVLF----C--R-------ILYSANE-------QLSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred ----------------------CCCCCEEEe----E--h-------hhhcCCh-------HHHHHHHHHHHHhcCCCCEE
Confidence 023688875 1 1 1122221 12357899999999999999
Q ss_pred EEEcCCCCCcCc
Q 004763 232 VYSTCSMNPVEN 243 (732)
Q Consensus 232 VYSTCSlnp~EN 243 (732)
+.....+...++
T Consensus 251 ~i~d~~~~~~~~ 262 (306)
T TIGR02716 251 LILDMVIDDPEN 262 (306)
T ss_pred EEEEeccCCCCC
Confidence 877655544443
No 134
>PRK06922 hypothetical protein; Provisional
Probab=98.23 E-value=1.1e-05 Score=94.43 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=86.6
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
+++..++.+|||+|||+|..+..++... |.+.|+|+|+++..+..++.++...+ .++.+..+|+..+|..
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~---------P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~ 482 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET---------EDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSS 482 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccc
Confidence 4566679999999999999888887753 46899999999999999988776554 3566777787665421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccccc-chHHHHHHHHHHHHhhccCCCEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGN-GLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~-~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
.....||.|++..+ +. -|..+-+..+. .-.....++|+.+.++|||||++
T Consensus 483 -------------------fedeSFDvVVsn~v------LH----~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 483 -------------------FEKESVDTIVYSSI------LH----ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred -------------------cCCCCEEEEEEchH------HH----hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence 12367999997432 00 00000010000 01235578899999999999999
Q ss_pred EEEcCCCC
Q 004763 232 VYSTCSMN 239 (732)
Q Consensus 232 VYSTCSln 239 (732)
+.+.-++.
T Consensus 534 II~D~v~~ 541 (677)
T PRK06922 534 IIRDGIMT 541 (677)
T ss_pred EEEeCccC
Confidence 98743343
No 135
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.21 E-value=2.6e-05 Score=79.57 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=76.1
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCccCCCC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
.+|||++||.|+.+..+++.. +...|+++|+++..+..++.+++..|.. ++.+...|....|.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~---------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~------- 64 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH---------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF------- 64 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------
Confidence 379999999999999888764 2468999999999999999998887754 56777776543211
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
...||.|++- +++... .....++..+.++|||||+++.++.
T Consensus 65 ---------------~~~fD~I~~~------~~l~~~----------------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 65 ---------------PDTYDLVFGF------EVIHHI----------------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ---------------CCCCCEeehH------HHHHhC----------------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1469999851 111100 1134688899999999999998754
No 136
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.19 E-value=1.4e-05 Score=82.40 Aligned_cols=137 Identities=26% Similarity=0.400 Sum_probs=95.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+.++||.+||-++||+|..-.|+++.++ ++|.|+|++.++.-..-|.+.+++- +|++.+-.||.. |.-.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg--------~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~-P~~Y 137 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVG--------PDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH-PEKY 137 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS-GGGG
T ss_pred cCCCCCCEEEEecccCCCccchhhhccC--------CCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC-hHHh
Confidence 3578999999999999999999999986 3799999999999988888777654 689989999986 3211
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH-HHHHhhccCCCEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIV 232 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL-~rAl~lLKpGGrLV 232 (732)
..--..+|.|++|+. +.-|.+|+ .+|-.+||+||.++
T Consensus 138 -----------------~~lv~~VDvI~~DVa-------------------------Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 138 -----------------RMLVEMVDVIFQDVA-------------------------QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp -----------------TTTS--EEEEEEE-S-------------------------STTHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------hcccccccEEEecCC-------------------------ChHHHHHHHHHHHhhccCCcEEE
Confidence 011258999999986 12355555 45657999999988
Q ss_pred EEc--CCC-CCcCcHHHHHHHHHHCC-CcEEEEec
Q 004763 233 YST--CSM-NPVENEAVVAEILRKCE-GSVELVDV 263 (732)
Q Consensus 233 YST--CSl-np~ENEaVV~~~L~~~~-~~velvd~ 263 (732)
.+- -|+ .....++|.+..+++.. ..+++++.
T Consensus 176 i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 176 ISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ 210 (229)
T ss_dssp EEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE
Confidence 763 334 44577788777776543 23555543
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.19 E-value=1.1e-05 Score=82.16 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
..+.+|||+|||+|..+.+++.. ...++++|.++..+..++.++.+.+..++.+...++..++.-
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~---- 108 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL-----------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK---- 108 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC----
Confidence 34789999999999988887653 245999999999999999888877665567776766554320
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
....||.|++.- .+ ... .....+|..+.++|++||.++.++|
T Consensus 109 ----------------~~~~~D~i~~~~------~l-------~~~---------~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 109 ----------------GAKSFDVVTCME------VL-------EHV---------PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ----------------CCCCccEEEehh------HH-------HhC---------CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 125799999731 11 100 1124678899999999999998877
Q ss_pred C
Q 004763 237 S 237 (732)
Q Consensus 237 S 237 (732)
.
T Consensus 151 ~ 151 (224)
T TIGR01983 151 N 151 (224)
T ss_pred C
Confidence 4
No 138
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.17 E-value=1.4e-05 Score=82.10 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=78.4
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
...++.+|||+|||+|..+..++.. ...|+++|.++..+..+..++...+. .+.+...++..++.
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~--- 109 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARL-----------GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA--- 109 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHc-----------CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh---
Confidence 3567889999999999988877653 24699999999999999888877665 45555555544321
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
.....||.|++.-. +...++ ...+|.++.++|++||+++.+
T Consensus 110 -----------------~~~~~fD~Ii~~~~------l~~~~~----------------~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 110 -----------------EHPGQFDVVTCMEM------LEHVPD----------------PASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred -----------------hcCCCccEEEEhhH------hhccCC----------------HHHHHHHHHHHcCCCcEEEEE
Confidence 11257999997321 111111 135789999999999999998
Q ss_pred cCCC
Q 004763 235 TCSM 238 (732)
Q Consensus 235 TCSl 238 (732)
++.-
T Consensus 151 ~~~~ 154 (233)
T PRK05134 151 TLNR 154 (233)
T ss_pred ecCC
Confidence 7753
No 139
>PRK01581 speE spermidine synthase; Validated
Probab=98.16 E-value=1.5e-05 Score=87.90 Aligned_cols=137 Identities=19% Similarity=0.211 Sum_probs=87.2
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH--HH---H--cCCCceEEE
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ--TK---R--MCTANLIVT 142 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n--~k---R--lg~~ni~Vt 142 (732)
|++++-+.| .+||++|+|.|+-+..++.. .+...|+++|+|+..+++++.. +. + +..+++.+.
T Consensus 143 p~m~~h~~P-krVLIIGgGdG~tlrelLk~---------~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv 212 (374)
T PRK01581 143 PIMSKVIDP-KRVLILGGGDGLALREVLKY---------ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH 212 (374)
T ss_pred HHHHhCCCC-CEEEEECCCHHHHHHHHHhc---------CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE
Confidence 344444444 49999999999865555432 1247999999999999998851 11 1 234678889
Q ss_pred ecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004763 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (732)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl 222 (732)
..|+..|... ....||.|++|.| +.... ... .-...+.+..+.
T Consensus 213 i~Da~~fL~~--------------------~~~~YDVIIvDl~---DP~~~------------~~~--~LyT~EFy~~~~ 255 (374)
T PRK01581 213 VCDAKEFLSS--------------------PSSLYDVIIIDFP---DPATE------------LLS--TLYTSELFARIA 255 (374)
T ss_pred ECcHHHHHHh--------------------cCCCccEEEEcCC---Ccccc------------chh--hhhHHHHHHHHH
Confidence 9998875321 1257999999976 11100 001 112356788899
Q ss_pred hhccCCCEEEEEcCCCCCcCcHHHH---HHHHHHCC
Q 004763 223 SLLKVGGRIVYSTCSMNPVENEAVV---AEILRKCE 255 (732)
Q Consensus 223 ~lLKpGGrLVYSTCSlnp~ENEaVV---~~~L~~~~ 255 (732)
+.|+|||.+|.-. -+|.....++ ...|++.+
T Consensus 256 ~~LkPgGV~V~Qs--~sp~~~~~~~~~i~~tL~~af 289 (374)
T PRK01581 256 TFLTEDGAFVCQS--NSPADAPLVYWSIGNTIEHAG 289 (374)
T ss_pred HhcCCCcEEEEec--CChhhhHHHHHHHHHHHHHhC
Confidence 9999999988763 3444555553 34444444
No 140
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.15 E-value=8e-06 Score=84.44 Aligned_cols=127 Identities=31% Similarity=0.411 Sum_probs=99.1
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+-++||.+||=++||+|....|+.+.++ |.|.|+|++.+..--.-|...+++- +||+.+..||+.--..+
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVG--------peG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVG--------PEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYR 221 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccC--------CCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchhee
Confidence 3479999999999999999999999886 5799999999988777777766543 67888888887621111
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH-HHHHHhhccCCCEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI-AMRGISLLKVGGRIV 232 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~I-L~rAl~lLKpGGrLV 232 (732)
..-..+|.|+.|++ . ..|.+| ..+|..+||+||-+|
T Consensus 222 ------------------mlVgmVDvIFaDva---------q----------------pdq~RivaLNA~~FLk~gGhfv 258 (317)
T KOG1596|consen 222 ------------------MLVGMVDVIFADVA---------Q----------------PDQARIVALNAQYFLKNGGHFV 258 (317)
T ss_pred ------------------eeeeeEEEEeccCC---------C----------------chhhhhhhhhhhhhhccCCeEE
Confidence 11257999999997 1 234444 457888999999998
Q ss_pred EE---cCCCCCcCcHHHHHHHHHH
Q 004763 233 YS---TCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 233 YS---TCSlnp~ENEaVV~~~L~~ 253 (732)
.| .|+-+...+|+|.+.-.++
T Consensus 259 isikancidstv~ae~vFa~Ev~k 282 (317)
T KOG1596|consen 259 ISIKANCIDSTVFAEAVFAAEVKK 282 (317)
T ss_pred EEEecccccccccHHHHHHHHHHH
Confidence 76 7999999999998876654
No 141
>PRK03612 spermidine synthase; Provisional
Probab=98.15 E-value=1.4e-05 Score=92.43 Aligned_cols=128 Identities=18% Similarity=0.116 Sum_probs=85.8
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH--HHHc-----CCCceEEEecccccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ--TKRM-----CTANLIVTNHEAQHF 149 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n--~kRl-----g~~ni~Vt~~Da~~f 149 (732)
....+|||+++|.|..+..++.. . +...|+++|+|++.++.++++ +..+ .-+++.+...|+..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~--~-------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY--P-------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC--C-------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 34579999999999988877652 1 126999999999999999884 2222 235788888898775
Q ss_pred CCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004763 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (732)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (732)
.. ....+||.|++|.|-.. + |... +-...++++.+.+.|||||
T Consensus 367 l~--------------------~~~~~fDvIi~D~~~~~-~-----~~~~-----------~L~t~ef~~~~~~~L~pgG 409 (521)
T PRK03612 367 LR--------------------KLAEKFDVIIVDLPDPS-N-----PALG-----------KLYSVEFYRLLKRRLAPDG 409 (521)
T ss_pred HH--------------------hCCCCCCEEEEeCCCCC-C-----cchh-----------ccchHHHHHHHHHhcCCCe
Confidence 32 01257999999976221 1 1110 1122567888899999999
Q ss_pred EEEEEcCCCCCcCcHHHHHHHHH
Q 004763 230 RIVYSTCSMNPVENEAVVAEILR 252 (732)
Q Consensus 230 rLVYSTCSlnp~ENEaVV~~~L~ 252 (732)
+++..++|- .........+.+
T Consensus 410 ~lv~~~~~~--~~~~~~~~~i~~ 430 (521)
T PRK03612 410 LLVVQSTSP--YFAPKAFWSIEA 430 (521)
T ss_pred EEEEecCCc--ccchHHHHHHHH
Confidence 999877653 333444343333
No 142
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.14 E-value=1e-05 Score=88.80 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
.++.+|||+|||+|..+..++..+. .+.|+++|.++..+..++++.. ..++.+...|+..++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~---------~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~----- 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD---------AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPF----- 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC---------CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCC-----
Confidence 4788999999999999888877642 3689999999999888777543 3456677777665431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
....||.|++. +.+...++ ..++|+++.++|||||+++.+
T Consensus 175 ----------------~~~sFDvVIs~------~~L~~~~d----------------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 175 ----------------PTDYADRYVSA------GSIEYWPD----------------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred ----------------CCCceeEEEEc------ChhhhCCC----------------HHHHHHHHHHhcCCCcEEEEE
Confidence 12579999972 22211111 135799999999999999875
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.12 E-value=2.7e-05 Score=82.70 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=86.3
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecccccC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHF 149 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg----~~ni~Vt~~Da~~f 149 (732)
+...|. +||++++|.|+.+..++... +...|+++|+|+..+..+++.+..++ .+++.+...|+..|
T Consensus 69 ~~~~p~-~VL~iG~G~G~~~~~ll~~~---------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~ 138 (270)
T TIGR00417 69 THPNPK-HVLVIGGGDGGVLREVLKHK---------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF 138 (270)
T ss_pred cCCCCC-EEEEEcCCchHHHHHHHhCC---------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH
Confidence 334444 99999999999877775532 24689999999999999988876543 24567777777654
Q ss_pred CCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004763 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (732)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (732)
-. .....||.|++|++- ..+. ...| ...+.++.+.++|+|||
T Consensus 139 l~--------------------~~~~~yDvIi~D~~~-~~~~---------------~~~l--~~~ef~~~~~~~L~pgG 180 (270)
T TIGR00417 139 LA--------------------DTENTFDVIIVDSTD-PVGP---------------AETL--FTKEFYELLKKALNEDG 180 (270)
T ss_pred HH--------------------hCCCCccEEEEeCCC-CCCc---------------ccch--hHHHHHHHHHHHhCCCc
Confidence 21 012579999999762 1111 0011 22567788899999999
Q ss_pred EEEEEcCCCCCcCcHHHHHHHHH
Q 004763 230 RIVYSTCSMNPVENEAVVAEILR 252 (732)
Q Consensus 230 rLVYSTCSlnp~ENEaVV~~~L~ 252 (732)
+++..++|. .-+...+..+++
T Consensus 181 ~lv~~~~~~--~~~~~~~~~~~~ 201 (270)
T TIGR00417 181 IFVAQSESP--WIQLELITDLKR 201 (270)
T ss_pred EEEEcCCCc--ccCHHHHHHHHH
Confidence 999886653 334455554443
No 144
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.12 E-value=1.5e-05 Score=80.97 Aligned_cols=102 Identities=24% Similarity=0.261 Sum_probs=73.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
.+.+|||++||+|..+..++... +...++++|+++..+..+..... +++.+...|...++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~---------~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~------ 94 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF---------PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL------ 94 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC---------CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC------
Confidence 35789999999999999998764 34679999999998877765432 366677777665431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
....||.|++..... |.. --.++|.+..++|++||.++.++
T Consensus 95 ---------------~~~~fD~vi~~~~l~--------------~~~--------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 95 ---------------EDSSFDLIVSNLALQ--------------WCD--------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ---------------CCCceeEEEEhhhhh--------------hcc--------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 125799999753211 110 11357899999999999999874
No 145
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.10 E-value=3.7e-05 Score=83.14 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=68.3
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
+|.++||..++|+..|-||.|..|++.+. .|.|+|+|.|+..+...++.++.++ .++.+.+.+..++...
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~---------~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLG---------TGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEH 84 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCC---------CCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHH
Confidence 46788999999999999999999998753 4899999999999999988877653 4677777766654431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (732)
. . ......||.||+|--+|.
T Consensus 85 l-~---------------~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 85 L-D---------------ELLVTKIDGILVDLGVSS 104 (305)
T ss_pred H-H---------------hcCCCcccEEEEeccCCH
Confidence 0 0 011246899999887765
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.08 E-value=1.7e-05 Score=80.54 Aligned_cols=135 Identities=17% Similarity=0.243 Sum_probs=92.4
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
.+||+|||-|..++++|.. .|.-.++|+|+...++..+...+.+.+..|+.++++||..+...
T Consensus 20 l~lEIG~G~G~~l~~~A~~---------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~-------- 82 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR---------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR-------- 82 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH---------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH--------
T ss_pred eEEEecCCCCHHHHHHHHH---------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh--------
Confidence 9999999999999999887 35789999999999999999999999999999999999873221
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCC
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp 240 (732)
......+|.|.+.-| |-|.+-.. .-.+| +|...|....+.|++||.|...|
T Consensus 83 ----------~~~~~~v~~i~i~FP-----------DPWpK~rH-~krRl--~~~~fl~~~~~~L~~gG~l~~~T----- 133 (195)
T PF02390_consen 83 ----------LFPPGSVDRIYINFP-----------DPWPKKRH-HKRRL--VNPEFLELLARVLKPGGELYFAT----- 133 (195)
T ss_dssp ----------HSTTTSEEEEEEES----------------SGGG-GGGST--TSHHHHHHHHHHEEEEEEEEEEE-----
T ss_pred ----------cccCCchheEEEeCC-----------CCCcccch-hhhhc--CCchHHHHHHHHcCCCCEEEEEe-----
Confidence 112367899988655 44544211 11122 45678888899999999998876
Q ss_pred cCcHHHHHHHHH---HCCCcEEEEe
Q 004763 241 VENEAVVAEILR---KCEGSVELVD 262 (732)
Q Consensus 241 ~ENEaVV~~~L~---~~~~~velvd 262 (732)
.++.....+++ .+.+.++.+.
T Consensus 134 -D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 134 -DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred -CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 45555555554 3223455553
No 147
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.01 E-value=5.5e-05 Score=77.34 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~ 148 (732)
+.++.+|||+|||.|..+..++.. ...|+|+|+++..+..++.++...+. .++.+...|+..
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-----------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-----------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 567899999999999999888763 25899999999999999998876664 366676666544
No 148
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.00 E-value=1.1e-05 Score=84.97 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=65.7
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+.++++. .+++.++++|+..++.
T Consensus 24 ~~~~~~~~~VLEIG~G~G~lt~~L~~~-----------~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 24 YAEDTDGDPVLEIGPGKGALTDELAKR-----------AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL- 89 (258)
T ss_pred hcCCCCcCeEEEEeCccCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-
Confidence 456788999999999999999999876 25899999999999999887754 4678999999876431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (732)
..||.|+++.|..-
T Consensus 90 ----------------------~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 ----------------------PEFNKVVSNLPYQI 103 (258)
T ss_pred ----------------------hhceEEEEcCCccc
Confidence 34799999999653
No 149
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.00 E-value=6.2e-05 Score=81.24 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=80.3
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCCccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~fp~~~~~ 155 (732)
.++.+|||++||+|.||..|++.+.. ...|+|+|+|..++..+.+++.+.. .-.+..+++|......+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~--------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-- 131 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ--------PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-- 131 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhcc--------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh--
Confidence 46789999999999999999998642 3679999999999999988876532 123555677765421110
Q ss_pred CCCCCCCccccccccccccccc---cEEEe--cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 156 KNFSSASDKGIESESNMGQLLF---DRVLC--DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~F---DrVL~--DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
..+ +++++ +. .-|.+ -...+.++|++..+.|+|||+
T Consensus 132 -------------------~~~~~~~~~~~~~gs---~~~~~-----------------~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 132 -------------------PEPAAGRRLGFFPGS---TIGNF-----------------TPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred -------------------cccccCCeEEEEecc---cccCC-----------------CHHHHHHHHHHHHHhcCCCCE
Confidence 111 33332 21 11211 012346789999999999999
Q ss_pred EEEEcCCCCCcCcHHHHHHH
Q 004763 231 IVYSTCSMNPVENEAVVAEI 250 (732)
Q Consensus 231 LVYSTCSlnp~ENEaVV~~~ 250 (732)
++... +-.-+.+++..+
T Consensus 173 ~lig~---d~~~~~~~~~~a 189 (301)
T TIGR03438 173 LLIGV---DLVKDPAVLEAA 189 (301)
T ss_pred EEEec---cCCCCHHHHHHh
Confidence 99754 444566666443
No 150
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.00 E-value=2.2e-05 Score=74.84 Aligned_cols=99 Identities=27% Similarity=0.323 Sum_probs=68.5
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
..++.+|||++||.|..+..++.. .-.|+++|+++..+.. .++...+.+....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~------ 72 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-----------GFEVTGVDISPQMIEK----------RNVVFDNFDAQDP------ 72 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-----------TSEEEEEESSHHHHHH----------TTSEEEEEECHTH------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-----------CCEEEEEECCHHHHhh----------hhhhhhhhhhhhh------
Confidence 577899999999999988877543 2389999999999886 2233333322221
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
......||.|+|- ..+.+-++ -..+|.+..++|||||+++.++
T Consensus 73 ---------------~~~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 73 ---------------PFPDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp ---------------HCHSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEE
T ss_pred ---------------hccccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEE
Confidence 1123689999982 23322222 2468899999999999999886
Q ss_pred CCC
Q 004763 236 CSM 238 (732)
Q Consensus 236 CSl 238 (732)
=..
T Consensus 116 ~~~ 118 (161)
T PF13489_consen 116 PNR 118 (161)
T ss_dssp EBT
T ss_pred cCC
Confidence 543
No 151
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.99 E-value=6.7e-06 Score=84.82 Aligned_cols=133 Identities=21% Similarity=0.249 Sum_probs=87.9
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH--HHcCCCceEEEecccccCCCC
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT--KRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~--kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.++.|++|||.|.|-|..++..++. +...|+.++.|+.-+.++.-|= ..+-..++.++.+|+..+-.
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~r----------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~- 199 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALER----------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK- 199 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHc----------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh-
Confidence 4667999999999999988877664 2358999999999887665441 22223367888888866321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
.+....||.|+-|||- ++... +-.-.++-+.-++.||+||+|.
T Consensus 200 ------------------~~~D~sfDaIiHDPPR---------------fS~Ag----eLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 200 ------------------DFDDESFDAIIHDPPR---------------FSLAG----ELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred ------------------cCCccccceEeeCCCc---------------cchhh----hHhHHHHHHHHHHHcCcCCcEE
Confidence 2334789999999992 11111 1122355666788999999998
Q ss_pred -EEcCCC---CCcCcHHHHHHHHHHCC
Q 004763 233 -YSTCSM---NPVENEAVVAEILRKCE 255 (732)
Q Consensus 233 -YSTCSl---np~ENEaVV~~~L~~~~ 255 (732)
|.--.- .-..=..=|++-|++.|
T Consensus 243 HYvG~Pg~ryrG~d~~~gVa~RLr~vG 269 (287)
T COG2521 243 HYVGNPGKRYRGLDLPKGVAERLRRVG 269 (287)
T ss_pred EEeCCCCcccccCChhHHHHHHHHhcC
Confidence 653221 11223455677777765
No 152
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.96 E-value=6.8e-05 Score=85.48 Aligned_cols=111 Identities=21% Similarity=0.123 Sum_probs=76.4
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
++...++.+|||+|||+|..|..++.. .+.|+|+|+++..+...+... -..+++.+.+.|+.... +
T Consensus 32 ~l~~~~~~~vLDlGcG~G~~~~~la~~-----------~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~-~ 97 (475)
T PLN02336 32 LLPPYEGKSVLELGAGIGRFTGELAKK-----------AGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPD-L 97 (475)
T ss_pred hcCccCCCEEEEeCCCcCHHHHHHHhh-----------CCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccc-c
Confidence 445567889999999999999998875 258999999999987544311 12357788888775311 0
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
......||.|++..++. .+. .....++|.++.++|||||+|+
T Consensus 98 ------------------~~~~~~fD~I~~~~~l~-------------~l~-------~~~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 98 ------------------NISDGSVDLIFSNWLLM-------------YLS-------DKEVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred ------------------CCCCCCEEEEehhhhHH-------------hCC-------HHHHHHHHHHHHHhcCCCeEEE
Confidence 01126799999844311 000 0113578999999999999998
Q ss_pred EEc
Q 004763 233 YST 235 (732)
Q Consensus 233 YST 235 (732)
+.-
T Consensus 140 ~~d 142 (475)
T PLN02336 140 FRE 142 (475)
T ss_pred EEe
Confidence 863
No 153
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.96 E-value=4.2e-05 Score=80.54 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=89.4
Q ss_pred ccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEe
Q 004763 65 AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTN 143 (732)
Q Consensus 65 ~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~ 143 (732)
....+...++....-.+||.++.+.|.-|+.+|..+. +.|.|+++|.++++...++.++++.|. .+|.+..
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~--------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP--------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC--------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 3334444455556677999999999999999998864 368999999999999999999999995 5688888
Q ss_pred cccccC-CCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004763 144 HEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (732)
Q Consensus 144 ~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl 222 (732)
++|... +.+.- .......||.|++|+- .......+..++
T Consensus 138 G~a~e~L~~l~~---------------~~~~~~~fD~iFiDad-------------------------K~~Y~~y~~~~l 177 (247)
T PLN02589 138 GPALPVLDQMIE---------------DGKYHGTFDFIFVDAD-------------------------KDNYINYHKRLI 177 (247)
T ss_pred ccHHHHHHHHHh---------------ccccCCcccEEEecCC-------------------------HHHhHHHHHHHH
Confidence 888663 21100 0001257999999863 112345667788
Q ss_pred hhccCCCEEEE
Q 004763 223 SLLKVGGRIVY 233 (732)
Q Consensus 223 ~lLKpGGrLVY 233 (732)
++|++||.||.
T Consensus 178 ~ll~~GGviv~ 188 (247)
T PLN02589 178 DLVKVGGVIGY 188 (247)
T ss_pred HhcCCCeEEEE
Confidence 99999999986
No 154
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.96 E-value=1.3e-05 Score=86.46 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=70.9
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
+|.++||..+||+++|.|+.|..|++.+. +.|.|+|+|.|+..+..+.+.+.. ..++.+.+.+...+...
T Consensus 14 ~L~~~pg~~vlD~TlG~GGhS~~il~~~~--------~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 14 ALAIKPDGIYVDGTFGGGGHSRAILERLG--------PKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred hhCCCCCCEEEEeCcCChHHHHHHHHhCC--------CCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH
Confidence 45678999999999999999999998863 258999999999999999887765 45788888887775432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (732)
. ......||.||+|--+|..
T Consensus 84 l-----------------~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 84 L-----------------AEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred H-----------------HcCCCccCEEEECCCcccc
Confidence 1 0011369999999877764
No 155
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=0.00016 Score=77.47 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=122.9
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~ 151 (732)
.+|.+.|+...+|..-|-||.|-.|++.+.. .|.++|+|.|+..+..++..++.++ .++.+++....++..
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~--------~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~ 87 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPD--------LGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAE 87 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCCC--------CCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHH
Confidence 3578999999999999999999999998753 6899999999999999999887766 567777665444322
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCC--------------CCc--cccChh-------hhhhcc-----
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG--------------DGT--LRKAPD-------IWRKWN----- 203 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG--------------dGt--lrk~pd-------~w~~ws----- 203 (732)
.. ....-.+||-||+|---|+ ||- ||.+++ +...|+
T Consensus 88 ~l----------------~~~~i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~ 151 (314)
T COG0275 88 AL----------------KELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLA 151 (314)
T ss_pred HH----------------HhcCCCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHH
Confidence 10 0111357899999864443 222 333321 111121
Q ss_pred ------------------------------------------ccc--ccchH-----------------HHHHHHHHHHH
Q 004763 204 ------------------------------------------VGL--GNGLH-----------------SLQVQIAMRGI 222 (732)
Q Consensus 204 ------------------------------------------~~~--~~~L~-----------------~lQ~~IL~rAl 222 (732)
|.. ....| ..-.+.|..|.
T Consensus 152 ~I~~~yGEEr~arrIA~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L~~~L~~a~ 231 (314)
T COG0275 152 RIFKEYGEERFAKRIARAIVERRKKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEELEEALEAAL 231 (314)
T ss_pred HHHHHhccHhhHHHHHHHHHHHhccCCCccHHHHHHHHHHhCCchhcccCCCcchhhhhhheeeehhHHHHHHHHHHHHH
Confidence 000 00011 12246788899
Q ss_pred hhccCCCEEEE-EcCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCccc-ceeccCCccccchhhhhhhhc
Q 004763 223 SLLKVGGRIVY-STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRK-WKVRDKGIWLASHKHVRKFRR 299 (732)
Q Consensus 223 ~lLKpGGrLVY-STCSlnp~ENEaVV~~~L~~~~~~velvd~s~~lP~L~~~pGl~~-W~v~~~~~~~~~~~~~~~~~~ 299 (732)
.+|+|||||+. |-+|+ |+ -+|..+++++.. ..++..+|-. .+|-.. .+...+....+|.+|+..+-|
T Consensus 232 ~~L~~gGRl~VIsFHSL---ED-RiVK~ff~~~s~----~~~p~~lP~~--~~~~~~~~~~itkK~i~ps~~Ei~~NpR 300 (314)
T COG0275 232 DLLKPGGRLAVISFHSL---ED-RIVKNFFKELSK----PGVPKGLPVT--EEGPALKFKLITKKPIMPSEEEIEANPR 300 (314)
T ss_pred HhhCCCcEEEEEEecch---HH-HHHHHHHHHhcc----cCCCCCCCcc--cccccchhhhccCCCcCCCHHHHHhCcc
Confidence 99999999885 44565 54 677888887643 5556667732 222122 244444456678888776554
No 156
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=6.2e-05 Score=75.54 Aligned_cols=133 Identities=24% Similarity=0.293 Sum_probs=82.0
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEec-ccccCCCCcc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH-EAQHFPGCRA 154 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~-Da~~fp~~~~ 154 (732)
++|+++|||++||||+++.-+.+... |.|.|+++|+- | -.......+..+ |.+. |....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~--------p~g~v~gVDll--------h---~~p~~Ga~~i~~~dvtd-p~~~~ 126 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVN--------PNGMVLGVDLL--------H---IEPPEGATIIQGNDVTD-PETYR 126 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhC--------CCceEEEEeee--------e---ccCCCCcccccccccCC-HHHHH
Confidence 47899999999999999877766643 68999999971 1 111122222222 2222 11000
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
+ --...+...+|.||.|.---..|.- ..+-..+-.+-...|.-|+.+++|+|.+|
T Consensus 127 -----k-------i~e~lp~r~VdvVlSDMapnaTGvr-----------~~Dh~~~i~LC~s~l~~al~~~~p~g~fv-- 181 (232)
T KOG4589|consen 127 -----K-------IFEALPNRPVDVVLSDMAPNATGVR-----------IRDHYRSIELCDSALLFALTLLIPNGSFV-- 181 (232)
T ss_pred -----H-------HHHhCCCCcccEEEeccCCCCcCcc-----------hhhHHHHHHHHHHHHHHhhhhcCCCcEEE--
Confidence 0 0011234789999999755555541 12223445666778889999999999988
Q ss_pred cCCCCCcCcHHHHHHHHHHC
Q 004763 235 TCSMNPVENEAVVAEILRKC 254 (732)
Q Consensus 235 TCSlnp~ENEaVV~~~L~~~ 254 (732)
|-+..-+.++-...-|.+.
T Consensus 182 -cK~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589|consen 182 -CKLWDGSEEALLQRRLQAV 200 (232)
T ss_pred -EEEecCCchHHHHHHHHHH
Confidence 6666556666666666543
No 157
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.94 E-value=4.8e-06 Score=74.08 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=58.8
Q ss_pred EeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCC
Q 004763 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSAS 162 (732)
Q Consensus 83 LDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~ 162 (732)
||++||+|..+..|++.. +.+.++++|+|+..+..+++++...+..+......+......
T Consensus 1 LdiGcG~G~~~~~l~~~~---------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~----------- 60 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD----------- 60 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS--------------
T ss_pred CEeCccChHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh-----------
Confidence 799999999999998875 368999999999999888887877765544444333222110
Q ss_pred ccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 163 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 163 ~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
......||.|++= +++.+ + .....+|+++.++|||||+|
T Consensus 61 --------~~~~~~fD~V~~~------~vl~~---------------l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 61 --------YDPPESFDLVVAS------NVLHH---------------L-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------CCC----SEEEEE-------TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred --------cccccccceehhh------hhHhh---------------h-hhHHHHHHHHHHHcCCCCCC
Confidence 0111589999971 22111 1 12247899999999999986
No 158
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.92 E-value=2.6e-05 Score=84.17 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=69.7
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFP 150 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~fp 150 (732)
..+++.++++|||++||+|..|..+++. .+.|+|+|+|+..+..+++++...+ ..++.++++|+..++
T Consensus 30 ~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-----------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 30 EKAAIKPTDTVLEIGPGTGNLTEKLLQL-----------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HhcCCCCcCEEEEecCchHHHHHHHHHh-----------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 3457889999999999999999998775 3579999999999999999988776 568999999986632
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (732)
...||+|+++.|..-.
T Consensus 99 -----------------------~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 -----------------------FPYFDVCVANVPYQIS 114 (294)
T ss_pred -----------------------ccccCEEEecCCcccC
Confidence 1358999999996654
No 159
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.92 E-value=1.3e-05 Score=86.65 Aligned_cols=194 Identities=21% Similarity=0.266 Sum_probs=103.4
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
+|.++|+..++|+.-|-||.|..|++.+. .|.|+|+|.|+..+....++++.. ..++.+.+....++...
T Consensus 15 ~L~~~~~g~~vD~T~G~GGHS~aiL~~~~---------~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 15 ALNPKPGGIYVDCTFGGGGHSKAILEKLP---------NGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHT--TT-EEEETT-TTSHHHHHHHHT-T---------T-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHH
T ss_pred hhCcCCCceEEeecCCcHHHHHHHHHhCC---------CCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHH
Confidence 46689999999999999999999998763 599999999999998877655433 35688887766654432
Q ss_pred ccCCCCCCCCcccccccccc-ccccccEEEecCCCCCC--------------Cc--cccChh-------hhhhcc-----
Q 004763 153 RANKNFSSASDKGIESESNM-GQLLFDRVLCDVPCSGD--------------GT--LRKAPD-------IWRKWN----- 203 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~~~FDrVL~DvPCSGd--------------Gt--lrk~pd-------~w~~ws----- 203 (732)
.. .. ....+|.||+|--+|.. |- ||-+|+ +...|+
T Consensus 85 l~----------------~~~~~~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~ 148 (310)
T PF01795_consen 85 LK----------------ELNGINKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELA 148 (310)
T ss_dssp HH----------------HTTTTS-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHH
T ss_pred HH----------------HccCCCccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHH
Confidence 10 11 23589999999877652 22 344442 111110
Q ss_pred ------------------------------------------c----c-ccc---------------chHHHHHHHHHHH
Q 004763 204 ------------------------------------------V----G-LGN---------------GLHSLQVQIAMRG 221 (732)
Q Consensus 204 ------------------------------------------~----~-~~~---------------~L~~lQ~~IL~rA 221 (732)
+ . ... .|.. -...|..|
T Consensus 149 ~I~~~yGee~~a~~IA~~Iv~~R~~~pi~tT~~L~~iI~~~~~~~~~~~~~hpatr~FQALRI~VN~EL~~-L~~~L~~a 227 (310)
T PF01795_consen 149 RIFREYGEEKFARRIARAIVEARKKKPITTTKELAEIIEKAVPKKRRRRKIHPATRVFQALRIAVNDELEE-LERGLEAA 227 (310)
T ss_dssp HHHHHHH--TTHHHHHHHHHHHHHHSS--BHHHHHHHHHHHS-HHHCC-SS-TTHHHHHHHHHHHCTHHHH-HHHHHHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCcccccccCCHHHHHHHHHHHHhccHHHH-HHHHHHHH
Confidence 0 0 000 1112 24568888
Q ss_pred HhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcc
Q 004763 222 ISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRI 300 (732)
Q Consensus 222 l~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd~s~~lP~L~~~pGl~~W~v~~~~~~~~~~~~~~~~~~~ 300 (732)
..+|+|||+||.- |++..|+- +|..+++...... .+...+|.. .......|+...+....+|-+|+..+.|.
T Consensus 228 ~~~L~~gGrl~VI--SFHSLEDR-iVK~~f~~~~~~~---~~p~~lp~~-~~~~~~~~~~i~kk~i~ps~~Ei~~NpRs 299 (310)
T PF01795_consen 228 PDLLKPGGRLVVI--SFHSLEDR-IVKQFFRELAKSC---KCPPGLPVC-ECGKHPKFKLITKKPITPSEEEIEENPRS 299 (310)
T ss_dssp HHHEEEEEEEEEE--ESSHHHHH-HHHHHHHCCSSC----------------------EESESS-B---HHHHHH-GGG
T ss_pred HHHhcCCcEEEEE--EecchhhH-HHHHHHHHhcccC---CCccccccc-ccccccceEEccCCccCCChhhhhcCCch
Confidence 9999999999875 67777764 5577777654322 223344422 12223447766666677888888877664
No 160
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.90 E-value=9e-05 Score=75.26 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=91.0
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
|.-..-.++|+++||-|..|.+||.. ...|+|+|+++..+..+++++.. .+++.+...+...+.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-----------Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~--- 102 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-----------CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFW--- 102 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-----------EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT-----
T ss_pred cCccccceeEecCCCccHHHHHHHHh-----------hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC---
Confidence 33344568999999999999999876 36899999999999998886653 478888888765431
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
....||.|++ |.-+..-.. .....+++.+....|+|||.||.
T Consensus 103 -------------------P~~~FDLIV~----SEVlYYL~~---------------~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----SEVLYYLDD---------------AEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp --------------------SS-EEEEEE----ES-GGGSSS---------------HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -------------------CCCCeeEEEE----ehHhHcCCC---------------HHHHHHHHHHHHHHhCCCCEEEE
Confidence 2378999997 433322111 12235678888999999999998
Q ss_pred EcCC------CCCcCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004763 234 STCS------MNPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (732)
Q Consensus 234 STCS------lnp~ENEaVV~~~L~~~~~~velvd~s~~lP 268 (732)
.+-. +-..-...-|.++|++.=-.|+.+.+....+
T Consensus 145 g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~ 185 (201)
T PF05401_consen 145 GHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSP 185 (201)
T ss_dssp EEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SST
T ss_pred EEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCC
Confidence 5432 1112244566777776555788888766555
No 161
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.89 E-value=5e-05 Score=80.54 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=68.8
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
.++.+|||++||+|..+..++..+... ....|+++|+++..+..+..+ .+++.+..+|+..+|.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~------~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~----- 147 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI------TTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPF----- 147 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc------cCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCC-----
Confidence 456789999999999999998875421 123799999999998877543 2456667777766542
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
....||.|++-- .+. .+....+.|||||+++..+
T Consensus 148 ----------------~~~sfD~I~~~~------------------~~~-----------~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 148 ----------------ADQSLDAIIRIY------------------APC-----------KAEELARVVKPGGIVITVT 181 (272)
T ss_pred ----------------cCCceeEEEEec------------------CCC-----------CHHHHHhhccCCCEEEEEe
Confidence 126799998510 010 1244567899999999865
No 162
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.88 E-value=1.5e-05 Score=79.95 Aligned_cols=99 Identities=19% Similarity=0.154 Sum_probs=80.3
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~ 159 (732)
+.+.|++||+|-.+.-+++. .-+|+|++.|++|...+.+|++-.|..|+.|+++||..+..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-----------A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-------- 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-----------AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-------- 94 (252)
T ss_pred hceeeccCCcchHHHHHHhh-----------hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--------
Confidence 78999999999988887776 36899999999999999999988888999999999988532
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
...|.|+|..= +..-+-.-|...+.+++++||-.++++
T Consensus 95 ---------------e~ADvvicEml--------------------DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 ---------------ENADVVICEML--------------------DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ---------------cccceeHHHHh--------------------hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 45688887321 112233568889999999999988876
No 163
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.86 E-value=6.4e-05 Score=78.28 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=96.6
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~ 159 (732)
-.+|++|+|.|..++++|.. .|.-..+|+|+....+..+...+.+.+++|+.++++||..+...-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~---------nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~------ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK---------NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL------ 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH---------CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc------
Confidence 48999999999999999887 367789999999999999999999999999999999998753211
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCC
Q 004763 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSln 239 (732)
......|+|.+.-| |-|.+-.. ..---+|...|....+.|++||.|...|
T Consensus 115 ------------~~~~sl~~I~i~FP-----------DPWpKkRH---~KRRl~~~~fl~~~a~~Lk~gG~l~~aT---- 164 (227)
T COG0220 115 ------------IPDGSLDKIYINFP-----------DPWPKKRH---HKRRLTQPEFLKLYARKLKPGGVLHFAT---- 164 (227)
T ss_pred ------------CCCCCeeEEEEECC-----------CCCCCccc---cccccCCHHHHHHHHHHccCCCEEEEEe----
Confidence 11247899988655 55544211 1111267888999999999999999887
Q ss_pred CcCcHHHHHHHH
Q 004763 240 PVENEAVVAEIL 251 (732)
Q Consensus 240 p~ENEaVV~~~L 251 (732)
.++......+
T Consensus 165 --D~~~y~e~~~ 174 (227)
T COG0220 165 --DNEEYFEWMM 174 (227)
T ss_pred --cCHHHHHHHH
Confidence 5666666633
No 164
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.84 E-value=0.00018 Score=73.15 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=73.2
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
+.-+..++||++||.|.-+..||+. .-.|+|+|.+...+..+.+.+.+.+++ +.+...|...+.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~-----------G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~---- 90 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQ-----------GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD---- 90 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHT-----------T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS----
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc----
Confidence 3335669999999999999999886 357999999999999999888887776 666666654421
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~-~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
. ...||.|++.+- +.. |+ ....+|+...-+.++|||.+++
T Consensus 91 -----------------~-~~~yD~I~st~v------~~f---------------L~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 91 -----------------F-PEEYDFIVSTVV------FMF---------------LQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp -------------------TTTEEEEEEESS------GGG---------------S-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -----------------c-cCCcCEEEEEEE------ecc---------------CCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 1 156999986321 110 11 1123567777789999999998
Q ss_pred Ec
Q 004763 234 ST 235 (732)
Q Consensus 234 ST 235 (732)
-|
T Consensus 132 ~~ 133 (192)
T PF03848_consen 132 VT 133 (192)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 165
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.80 E-value=0.00015 Score=74.65 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=71.2
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH------------HcCCCceEEEec
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK------------RMCTANLIVTNH 144 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k------------Rlg~~ni~Vt~~ 144 (732)
.++.+|||++||.|--+..||+. .-.|+|+|+++..+..+..... +....++.+..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-----------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-----------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-----------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence 46789999999999999999875 3479999999999997633211 001124555666
Q ss_pred ccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHh
Q 004763 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (732)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~ 223 (732)
|...++.. ....||.|+- - +.+-. .|+ ...+.+.+..+
T Consensus 102 D~~~~~~~--------------------~~~~fD~i~D-~-----~~~~~l~~~---------------~R~~~~~~l~~ 140 (213)
T TIGR03840 102 DFFALTAA--------------------DLGPVDAVYD-R-----AALIALPEE---------------MRQRYAAHLLA 140 (213)
T ss_pred cCCCCCcc--------------------cCCCcCEEEe-c-----hhhccCCHH---------------HHHHHHHHHHH
Confidence 66553310 0145787763 1 11100 111 22457888899
Q ss_pred hccCCCEEEEEcCCC
Q 004763 224 LLKVGGRIVYSTCSM 238 (732)
Q Consensus 224 lLKpGGrLVYSTCSl 238 (732)
+|||||++++.|-+.
T Consensus 141 lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 141 LLPPGARQLLITLDY 155 (213)
T ss_pred HcCCCCeEEEEEEEc
Confidence 999999988876665
No 166
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.80 E-value=0.00012 Score=84.66 Aligned_cols=159 Identities=12% Similarity=0.046 Sum_probs=92.8
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
.+.+|||.|||+|+..+.++..+...... ..-.-.++++|+|+..+..+..++..++...+.+.+.|........
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~---- 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-KEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN---- 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCc-ccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc----
Confidence 45699999999999999999887531100 0012578999999999999999988776323444444432211000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc------------Chhhhh---hc-------cc-ccc-cchHHH
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK------------APDIWR---KW-------NV-GLG-NGLHSL 213 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk------------~pd~w~---~w-------s~-~~~-~~L~~l 213 (732)
.......||.|+.+||.......++ .++.+. .| .. ... .+...+
T Consensus 106 ------------~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 173 (524)
T TIGR02987 106 ------------IESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTE 173 (524)
T ss_pred ------------cccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccH
Confidence 0011257999999999887543221 111111 01 00 000 122234
Q ss_pred HHHH-HHHHHhhccCCCEEEEEcCC-CCCcCcHHHHHHHHHH
Q 004763 214 QVQI-AMRGISLLKVGGRIVYSTCS-MNPVENEAVVAEILRK 253 (732)
Q Consensus 214 Q~~I-L~rAl~lLKpGGrLVYSTCS-lnp~ENEaVV~~~L~~ 253 (732)
...+ +.+|+++|++||++.+.+-+ +........+.+.|-+
T Consensus 174 y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~ 215 (524)
T TIGR02987 174 YSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFN 215 (524)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence 4444 46899999999999987554 2223334344444433
No 167
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.79 E-value=0.0002 Score=75.97 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCCEEEeecCCCCh----HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH---H-cCC------------
Q 004763 77 QPDHFVLDMCAAPGS----KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK---R-MCT------------ 136 (732)
Q Consensus 77 ~pg~~VLDmCAAPGs----KT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k---R-lg~------------ 136 (732)
.++.+|||++||+|- .+..+++.+... ......|+|.|+|+..+..+++.+- . -+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~----~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKA----REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhc----CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 456799999999995 455555544320 0125799999999999998876431 0 011
Q ss_pred -----------CceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc
Q 004763 137 -----------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG 205 (732)
Q Consensus 137 -----------~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~ 205 (732)
.++.+..+|....+ .....||.|+| . . +...+
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~---------------------~~~~~fD~I~c----r--n-------vl~yf--- 216 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAES---------------------PPLGDFDLIFC----R--N-------VLIYF--- 216 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCC---------------------CccCCCCEEEe----c--h-------hHHhC---
Confidence 13444445443321 11367999997 1 1 11111
Q ss_pred cccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 206 LGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 206 ~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
-...+.+++.+..+.|+|||.|+..
T Consensus 217 ----~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 217 ----DEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ----CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0245678999999999999999976
No 168
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.78 E-value=0.00043 Score=75.48 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl 134 (732)
++.+|||+|||+|..+..++.. ...|+|+|+++..+..++++++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-----------g~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-----------GAIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhc
Confidence 5789999999999999988764 258999999999999999988765
No 169
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.76 E-value=8.3e-05 Score=78.18 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=69.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc------eEEEecccccCCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN------LIVTNHEAQHFPGC 152 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n------i~Vt~~Da~~fp~~ 152 (732)
|.+|||++||.|-.|.+||.+ ...|+|+|++.+.+..++...+.....+ +...+.++.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-----------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E----- 153 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-----------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE----- 153 (282)
T ss_pred CceEEEeccCccccchhhHhh-----------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh-----
Confidence 688999999999999999887 4689999999999999888733222111 111111111
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
.....||.|+| -++.. -...-..++....++|||||+|+
T Consensus 154 -------------------~~~~~fDaVvc-------------sevle---------HV~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 154 -------------------GLTGKFDAVVC-------------SEVLE---------HVKDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred -------------------hcccccceeee-------------HHHHH---------HHhCHHHHHHHHHHHhCCCCceE
Confidence 11256999998 11111 11123578899999999999999
Q ss_pred EEc
Q 004763 233 YST 235 (732)
Q Consensus 233 YST 235 (732)
.||
T Consensus 193 itt 195 (282)
T KOG1270|consen 193 ITT 195 (282)
T ss_pred eee
Confidence 986
No 170
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.76 E-value=0.00012 Score=73.36 Aligned_cols=114 Identities=25% Similarity=0.260 Sum_probs=78.0
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCCccCCCC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~~~~~ 158 (732)
++|||++||-|....+|++-= -.+.++++|-+++.+.++.+.+.|-+.+| |.+-..|... |
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg---------f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~-~-------- 130 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG---------FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD-P-------- 130 (227)
T ss_pred cceeeccCCchHHHHHHHHhc---------CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC-C--------
Confidence 399999999999888887641 24679999999999999999999999887 6666666543 1
Q ss_pred CCCCccccccccccccccccEEEe----cC-CCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 159 SSASDKGIESESNMGQLLFDRVLC----DV-PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~----Dv-PCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
.....+||+||= |+ .-|+++.-.|. .--+...-++|+|||++|.
T Consensus 131 ------------~~~~~qfdlvlDKGT~DAisLs~d~~~~r~-------------------~~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 131 ------------DFLSGQFDLVLDKGTLDAISLSPDGPVGRL-------------------VVYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred ------------cccccceeEEeecCceeeeecCCCCcccce-------------------eeehhhHhhccCCCcEEEE
Confidence 122356777762 21 11333321110 1124455668999999999
Q ss_pred EcCCCCCcC
Q 004763 234 STCSMNPVE 242 (732)
Q Consensus 234 STCSlnp~E 242 (732)
+.|-+...|
T Consensus 180 tSCN~T~dE 188 (227)
T KOG1271|consen 180 TSCNFTKDE 188 (227)
T ss_pred EecCccHHH
Confidence 999985443
No 171
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.71 E-value=8.2e-05 Score=76.67 Aligned_cols=134 Identities=25% Similarity=0.335 Sum_probs=80.3
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
-.+|.|+||||||++..|.+.|.....+.......|||+|+.+ ...++.+.-..+|.+.-..+. .
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~GV~qlq~DIT~~stae--~-- 106 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEGVIQLQGDITSASTAE--A-- 106 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCceEEeecccCCHhHHH--H--
Confidence 3589999999999999999998763222111123699999722 113456777777766521100 0
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH----HHHHHHHHHHH----hhccCCCE
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH----SLQVQIAMRGI----SLLKVGGR 230 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~----~lQ~~IL~rAl----~lLKpGGr 230 (732)
- -..+...+.|.|+||.. ||+ -++| ..|.+||..|+ ..||+||.
T Consensus 107 --------I-i~hfggekAdlVvcDGA----------PDv---------TGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~ 158 (294)
T KOG1099|consen 107 --------I-IEHFGGEKADLVVCDGA----------PDV---------TGLHDLDEYVQAQLLLAALNIATCVLKPGGS 158 (294)
T ss_pred --------H-HHHhCCCCccEEEeCCC----------CCc---------cccccHHHHHHHHHHHHHHHHHhheecCCCe
Confidence 0 01123368899999843 222 1222 35777777665 57999999
Q ss_pred EEEEcCCCCCcCcHHHHHHHHHHCCCcE
Q 004763 231 IVYSTCSMNPVENEAVVAEILRKCEGSV 258 (732)
Q Consensus 231 LVYSTCSlnp~ENEaVV~~~L~~~~~~v 258 (732)
+|- -+..-++-..+..-|+..-..|
T Consensus 159 FVa---KifRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 159 FVA---KIFRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred eeh---hhhccCchHHHHHHHHHHhhce
Confidence 884 3455555555555555543333
No 172
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.70 E-value=0.00025 Score=73.43 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=100.6
Q ss_pred chhhHHHHHHHhhccc-ccCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEe
Q 004763 40 KNQTLERFHKFLKLEN-EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (732)
Q Consensus 40 k~~~l~~~~~~l~~~~-~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD 118 (732)
..+.++++.++-.... ....+..=.....+...++..-...++||++.-+|.-++..|..+.. +|+|+|+|
T Consensus 34 e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~--------dGrv~a~e 105 (237)
T KOG1663|consen 34 EPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPE--------DGRVVAIE 105 (237)
T ss_pred CcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCC--------CceEEEEe
Confidence 3455666666533221 11222223334444555566667889999999999999988888764 79999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc-eEEEecccccC-CCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccCh
Q 004763 119 LDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAP 196 (732)
Q Consensus 119 id~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~p 196 (732)
+|..-.+......+..|... +.+..++|..- +.+. .+.+...||-+++|+
T Consensus 106 id~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~----------------~~~~~~tfDfaFvDa------------ 157 (237)
T KOG1663|consen 106 IDADAYEIGLELVKLAGVDHKITFIEGPALESLDELL----------------ADGESGTFDFAFVDA------------ 157 (237)
T ss_pred cChHHHHHhHHHHHhccccceeeeeecchhhhHHHHH----------------hcCCCCceeEEEEcc------------
Confidence 99999999988888888753 66677766541 1110 112347899999986
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 197 DIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 197 d~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
|+. .......++++|+|+||.|+|=-
T Consensus 158 --dK~-----------nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 158 --DKD-----------NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred --chH-----------HHHHHHHHHHhhcccccEEEEec
Confidence 222 22367889999999999999853
No 173
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.69 E-value=4.4e-05 Score=82.56 Aligned_cols=146 Identities=23% Similarity=0.298 Sum_probs=96.5
Q ss_pred cCcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHH-------HHHH
Q 004763 57 IGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN-------LLIH 129 (732)
Q Consensus 57 ~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~-------~L~~ 129 (732)
.|+-+.--.-|.+.+-..-++||+.|+|=+.|+||.....|.. .+.|++-|+|...++ -+..
T Consensus 187 iGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F-----------Ga~viGtDIDyr~vragrg~~~si~a 255 (421)
T KOG2671|consen 187 IGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF-----------GAYVIGTDIDYRTVRAGRGEDESIKA 255 (421)
T ss_pred cCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh-----------cceeeccccchheeecccCCCcchhH
Confidence 4554443346666677778999999999999999986655544 589999999988776 4677
Q ss_pred HHHHcCCCc--eEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh---------
Q 004763 130 QTKRMCTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI--------- 198 (732)
Q Consensus 130 n~kRlg~~n--i~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~--------- 198 (732)
|.+..|+.. +-|..+|..+-| + .....||.|+||||..--.-.||.-.-
T Consensus 256 NFkQYg~~~~fldvl~~D~sn~~-~-------------------rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~ 315 (421)
T KOG2671|consen 256 NFKQYGSSSQFLDVLTADFSNPP-L-------------------RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEES 315 (421)
T ss_pred hHHHhCCcchhhheeeecccCcc-h-------------------hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccc
Confidence 888888532 445555555421 1 124789999999996432212221000
Q ss_pred -hh-hcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 199 -WR-KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 199 -w~-~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
-. .........|..+-..+|.-+.+.|.-|||+|+
T Consensus 316 ~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 316 SRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred cccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 00 011122334566677889999999999999995
No 174
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.68 E-value=0.00079 Score=77.59 Aligned_cols=175 Identities=16% Similarity=0.137 Sum_probs=113.2
Q ss_pred CcEEEccccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 58 G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
|.++--..++-+.+.+|.+++..+|+|-|||+||.-++.+..+.... ....+++.|++.....+++-|+--.|..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~-----~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ-----DEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc-----cceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 88887777888888889999999999999999999999999986421 0378999999999999988887766665
Q ss_pred -ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccC---hhhhhhcccccccchHHH
Q 004763 138 -NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA---PDIWRKWNVGLGNGLHSL 213 (732)
Q Consensus 138 -ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~---pd~w~~ws~~~~~~L~~l 213 (732)
++.+..+|...-|... .......||.|+..||-|++|...-. ..-|+....+....-..-
T Consensus 241 ~~~~i~~~dtl~~~~~~----------------~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (489)
T COG0286 241 GDANIRHGDTLSNPKHD----------------DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSA 304 (489)
T ss_pred ccccccccccccCCccc----------------ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCch
Confidence 2333334332211100 01233679999999999977654321 111211111111111111
Q ss_pred HHHHHHHHHhhccCCCEEE--EEcCCCCCcCcHHHHHHHHHH
Q 004763 214 QVQIAMRGISLLKVGGRIV--YSTCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLV--YSTCSlnp~ENEaVV~~~L~~ 253 (732)
-..-+.+.+..|+|||+.. ...=.+...-+|..|...|-.
T Consensus 305 ~~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 305 DLAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred HHHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 1456778888999977433 223334444478888887765
No 175
>PLN02366 spermidine synthase
Probab=97.67 E-value=0.0006 Score=74.12 Aligned_cols=111 Identities=10% Similarity=0.051 Sum_probs=78.8
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl----g~~ni~Vt~~Da~~fp~~ 152 (732)
....+||++++|.|+.+..++.. . +...|+.+|+|+.-++.+++.+... .-+++.+...|+..|-.-
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~--~-------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH--S-------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC--C-------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh
Confidence 34679999999999987777653 1 1368999999999999988876543 235789999998765320
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
.....||.|++|.+-. .|. .-+-...+.++.+.+.|+|||.+|
T Consensus 161 -------------------~~~~~yDvIi~D~~dp-~~~-----------------~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 161 -------------------APEGTYDAIIVDSSDP-VGP-----------------AQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred -------------------ccCCCCCEEEEcCCCC-CCc-----------------hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 0125799999997511 110 111234577888999999999987
Q ss_pred E
Q 004763 233 Y 233 (732)
Q Consensus 233 Y 233 (732)
.
T Consensus 204 ~ 204 (308)
T PLN02366 204 T 204 (308)
T ss_pred E
Confidence 5
No 176
>PRK10742 putative methyltransferase; Provisional
Probab=97.64 E-value=0.00013 Score=76.60 Aligned_cols=90 Identities=16% Similarity=-0.011 Sum_probs=71.3
Q ss_pred cchhhhcCCCCCC--EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc------CC---
Q 004763 68 MVPPLFLDVQPDH--FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM------CT--- 136 (732)
Q Consensus 68 mlp~llLd~~pg~--~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl------g~--- 136 (732)
...+.++++++|. +|||++||.|.-++.++.. .+.|+++|.++.-+.+|.++++++ +.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-----------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~ 144 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-----------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQ 144 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhh
Confidence 3446677889999 9999999999999998875 356999999999999999999996 32
Q ss_pred CceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004763 137 ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (732)
Q Consensus 137 ~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (732)
.++.+.+.|+..|..- ....||.|.+|||...
T Consensus 145 ~ri~l~~~da~~~L~~--------------------~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 145 ERLQLIHASSLTALTD--------------------ITPRPQVVYLDPMFPH 176 (250)
T ss_pred ceEEEEeCcHHHHHhh--------------------CCCCCcEEEECCCCCC
Confidence 4678888887765321 1136999999999443
No 177
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.64 E-value=0.00013 Score=77.62 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=63.4
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+++.++++|||+|||+|..|..|+.. .+.|+|+|+|+..+..+..++. .+++.+.++|+..++.-
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt~~L~~~-----------~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALTEPLLER-----------AAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLS 102 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHHHHHHHh-----------CCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHH
Confidence 457889999999999999999999876 2489999999999999887653 26789999998775310
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCC
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS 187 (732)
...+|.|++++|..
T Consensus 103 ---------------------~~~~~~vv~NlPY~ 116 (272)
T PRK00274 103 ---------------------ELQPLKVVANLPYN 116 (272)
T ss_pred ---------------------HcCcceEEEeCCcc
Confidence 01168999999953
No 178
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.63 E-value=0.00052 Score=70.08 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHE 145 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~D 145 (732)
..++.+|||+|||+|..+..++.. ...|+++|+++..+..++.+....+. .++.+...|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-----------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 457889999999999998888764 24699999999999999998877765 456666665
No 179
>PRK06202 hypothetical protein; Provisional
Probab=97.62 E-value=0.00039 Score=71.79 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=70.4
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
+...++.+|||+|||+|..+..|+..+... .+...|+|+|+++..+..++.+.... ++.+...++..++.
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~-----g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~-- 125 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRD-----GLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVA-- 125 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhC-----CCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccc--
Confidence 344677899999999999999988765421 13458999999999998877654322 34444444443321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
....||.|++. ..+.+-++. .-.++|+.+.++++ |.++.
T Consensus 126 -------------------~~~~fD~V~~~------~~lhh~~d~--------------~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 126 -------------------EGERFDVVTSN------HFLHHLDDA--------------EVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred -------------------cCCCccEEEEC------CeeecCChH--------------HHHHHHHHHHHhcC--eeEEE
Confidence 12679999972 223222211 12467888888887 45554
Q ss_pred E
Q 004763 234 S 234 (732)
Q Consensus 234 S 234 (732)
.
T Consensus 165 ~ 165 (232)
T PRK06202 165 N 165 (232)
T ss_pred e
Confidence 3
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.59 E-value=0.00074 Score=73.82 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=62.8
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCC-ceEEEe-cccccCCCCcc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTA-NLIVTN-HEAQHFPGCRA 154 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl-g~~-ni~Vt~-~Da~~fp~~~~ 154 (732)
.+.+|||+|||.|.....|+... +...++|+|+|+..+..+++|+++. +.. .+.+.. .+...+..-
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~---------~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-- 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE---------YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-- 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC---------CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc--
Confidence 46899999999999887776653 2468999999999999999999998 665 455542 232221110
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (732)
.......||.|+|+||.-.++.
T Consensus 183 ---------------i~~~~~~fDlivcNPPf~~s~~ 204 (321)
T PRK11727 183 ---------------IIHKNERFDATLCNPPFHASAA 204 (321)
T ss_pred ---------------ccccCCceEEEEeCCCCcCcch
Confidence 0012367999999999766543
No 181
>PLN02823 spermine synthase
Probab=97.56 E-value=0.00067 Score=74.63 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=86.5
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecc
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHE 145 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl----g~~ni~Vt~~D 145 (732)
|+++..+.| .+||-++.|-|+-+..++..- +...|+++|+|++-++++++.+... .-+++.+...|
T Consensus 96 ~~l~~~~~p-k~VLiiGgG~G~~~re~l~~~---------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D 165 (336)
T PLN02823 96 PALLHHPNP-KTVFIMGGGEGSTAREVLRHK---------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND 165 (336)
T ss_pred HHHhhCCCC-CEEEEECCCchHHHHHHHhCC---------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh
Confidence 344444433 589999999998877665531 2468999999999999998876432 23678899999
Q ss_pred cccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCC-CCccccChhhhhhcccccccchHHHHHHHHH-HHHh
Q 004763 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG-DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM-RGIS 223 (732)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG-dGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~-rAl~ 223 (732)
+..|... ....||.|++|++=.. .|. ..+-...+.++ .+.+
T Consensus 166 a~~~L~~--------------------~~~~yDvIi~D~~dp~~~~~-----------------~~~Lyt~eF~~~~~~~ 208 (336)
T PLN02823 166 ARAELEK--------------------RDEKFDVIIGDLADPVEGGP-----------------CYQLYTKSFYERIVKP 208 (336)
T ss_pred hHHHHhh--------------------CCCCccEEEecCCCccccCc-----------------chhhccHHHHHHHHHH
Confidence 9876421 1257999999974110 010 01112335565 6778
Q ss_pred hccCCCEEEEEcCCCCCcCcHHHHHHHHH
Q 004763 224 LLKVGGRIVYSTCSMNPVENEAVVAEILR 252 (732)
Q Consensus 224 lLKpGGrLVYSTCSlnp~ENEaVV~~~L~ 252 (732)
.|+|||.+|.-.-|.....+...+..+++
T Consensus 209 ~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~ 237 (336)
T PLN02823 209 KLNPGGIFVTQAGPAGILTHKEVFSSIYN 237 (336)
T ss_pred hcCCCcEEEEeccCcchhccHHHHHHHHH
Confidence 99999998865444333334444444443
No 182
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00017 Score=81.73 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=82.6
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc-CCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPG 151 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~-fp~ 151 (732)
.+++.++..+||+|||+|-....++.- .+.|+++++++..+.-+..|++.+|..|..+..+-|.+ |+.
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~~-----------~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALARG-----------VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPS 446 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhcc-----------ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccch
Confidence 467788899999999999988877653 58999999999999999999999999999999885554 443
Q ss_pred CccCCCCCCCCcccccccccccccccc-EEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFD-RVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FD-rVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
+. +..+ ..=+ .+++|||-.| +|.. +-.+++-.+.--+
T Consensus 447 l~-~~~~----------------~~~~~v~iiDPpR~G---------------------lh~~----~ik~l~~~~~~~r 484 (534)
T KOG2187|consen 447 LL-TPCC----------------DSETLVAIIDPPRKG---------------------LHMK----VIKALRAYKNPRR 484 (534)
T ss_pred hc-ccCC----------------CCCceEEEECCCccc---------------------ccHH----HHHHHHhccCccc
Confidence 31 1110 1223 6788998443 3332 2233333443378
Q ss_pred EEEEcCCCC
Q 004763 231 IVYSTCSMN 239 (732)
Q Consensus 231 LVYSTCSln 239 (732)
+||.+|...
T Consensus 485 lvyvSCn~~ 493 (534)
T KOG2187|consen 485 LVYVSCNPH 493 (534)
T ss_pred eEEEEcCHH
Confidence 999999983
No 183
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.54 E-value=0.00055 Score=69.97 Aligned_cols=60 Identities=8% Similarity=0.033 Sum_probs=46.1
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.+.++.+|||+|||+|..+..|+..+. .+.|+|+|+++..+..++++. +++.+...|+..
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~---------~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP---------FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 456788999999999999999877642 478999999999999887653 344555566544
No 184
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.53 E-value=0.00046 Score=69.76 Aligned_cols=97 Identities=24% Similarity=0.227 Sum_probs=74.8
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
+|+|+++|.|-=..-+|-+. |...|+.+|...+|+..|.+-+..+|++|+.+.+..+.. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~---------p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~---------- 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR---------PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P---------- 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH----------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T----------
T ss_pred eEEecCCCCCChhHHHHHhC---------CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c----------
Confidence 89999999998888777664 467899999999999999999999999999999887765 1
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
.....||.|++=+= ..+ ..++.-+..+|++||+++.-
T Consensus 111 -----------~~~~~fd~v~aRAv----------------------~~l----~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 111 -----------EYRESFDVVTARAV----------------------APL----DKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -----------TTTT-EEEEEEESS----------------------SSH----HHHHHHHGGGEEEEEEEEEE
T ss_pred -----------ccCCCccEEEeehh----------------------cCH----HHHHHHHHHhcCCCCEEEEE
Confidence 11378999997321 011 25677888999999988764
No 185
>PRK05785 hypothetical protein; Provisional
Probab=97.51 E-value=0.00055 Score=70.99 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=63.5
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
.++.+|||+|||+|..+..+++.. .+.|+|+|.++.++..++... .....|+..+|.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~----------~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~----- 106 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF----------KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPF----- 106 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc----------CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCC-----
Confidence 347899999999999988887753 268999999999998765421 124566665442
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (732)
....||.|++ +. .++.-++ ..+.|+...+.|||++
T Consensus 107 ----------------~d~sfD~v~~-----~~-~l~~~~d----------------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 107 ----------------RDKSFDVVMS-----SF-ALHASDN----------------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred ----------------CCCCEEEEEe-----cC-hhhccCC----------------HHHHHHHHHHHhcCce
Confidence 2368999997 11 2222221 2457888889999953
No 186
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0013 Score=67.04 Aligned_cols=140 Identities=23% Similarity=0.309 Sum_probs=99.1
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
-+++|++||=++||+|....|++..++ .|.|+|++.+++-..-|...+++ -+|+..+..||.. |.-.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~---------~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~-P~~Y- 139 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG---------EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARK-PEKY- 139 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC---------CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCC-cHHh-
Confidence 478999999999999999999999864 59999999999988888777764 3678888888865 3210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH-HHHHhhccCCCEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIVY 233 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL-~rAl~lLKpGGrLVY 233 (732)
..--..+|.|..|+. .+.|.+|+ .+|-.+||.||.++.
T Consensus 140 ----------------~~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 140 ----------------RHLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred ----------------hhhcccccEEEEecC-------------------------CchHHHHHHHHHHHhcccCCeEEE
Confidence 011256999999985 13456665 567889999996554
Q ss_pred E--cCCCCCcCc-HHHHHHHHHHC-CCcEEEEecCccCC
Q 004763 234 S--TCSMNPVEN-EAVVAEILRKC-EGSVELVDVSNEVP 268 (732)
Q Consensus 234 S--TCSlnp~EN-EaVV~~~L~~~-~~~velvd~s~~lP 268 (732)
+ +-|+..-+. +.|...-+++. .+.|++++.-+.-|
T Consensus 179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LeP 217 (231)
T COG1889 179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEP 217 (231)
T ss_pred EEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCC
Confidence 4 666665444 45555444432 24577776544334
No 187
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.49 E-value=0.00033 Score=71.95 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=75.8
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
+.+-.+|.|++||||.-|.+|++.. |...|+++|.|+.++..+.. | .+++.+..+|...+-
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw---------P~A~i~GiDsS~~Mla~Aa~---r--lp~~~f~~aDl~~w~----- 88 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW---------PDAVITGIDSSPAMLAKAAQ---R--LPDATFEEADLRTWK----- 88 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC---------CCCeEeeccCCHHHHHHHHH---h--CCCCceecccHhhcC-----
Confidence 4667799999999999999998874 56899999999999987744 3 366777777776642
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
....+|.|+.++- -.|-+.. .++|.|-+..|.|||.|..
T Consensus 89 -----------------p~~~~dllfaNAv--------------lqWlpdH--------~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 89 -----------------PEQPTDLLFANAV--------------LQWLPDH--------PELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred -----------------CCCccchhhhhhh--------------hhhcccc--------HHHHHHHHHhhCCCceEEE
Confidence 1256888887542 2454443 4678888999999999865
No 188
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.45 E-value=0.0011 Score=65.82 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=103.8
Q ss_pred hhHHHHHHHhhcccccCcEEEccccccchhh----hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 004763 42 QTLERFHKFLKLENEIGNITRQEAVSMVPPL----FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117 (732)
Q Consensus 42 ~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~l----lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn 117 (732)
.++.-|+.|+.....+|.|.. +|-+.+. ..++..|--||.++.|+|-.|-.|++..+. ...++|+
T Consensus 11 ~e~~F~k~wi~~PrtVGaI~P---sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~--------~~~L~~i 79 (194)
T COG3963 11 EEISFFKGWIDNPRTVGAILP---SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVR--------PESLTAI 79 (194)
T ss_pred HHHHHHHHHhcCCceeeeecC---CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCC--------ccceEEE
Confidence 467788999999999999863 3333322 236788999999999999999999887543 4689999
Q ss_pred eCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChh
Q 004763 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPD 197 (732)
Q Consensus 118 Did~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd 197 (732)
|.+++-...|.+. . +.+.++++||...... + .......||.|++-+| +..-|-
T Consensus 80 E~~~dF~~~L~~~---~--p~~~ii~gda~~l~~~-l---------------~e~~gq~~D~viS~lP------ll~~P~ 132 (194)
T COG3963 80 EYSPDFVCHLNQL---Y--PGVNIINGDAFDLRTT-L---------------GEHKGQFFDSVISGLP------LLNFPM 132 (194)
T ss_pred EeCHHHHHHHHHh---C--CCccccccchhhHHHH-H---------------hhcCCCeeeeEEeccc------cccCcH
Confidence 9999998877552 2 3455889998764311 1 1123467999999777 211111
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 198 IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 198 ~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
..-.+||..++..|.+||.+|--|-+
T Consensus 133 --------------~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 133 --------------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred --------------HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 23368999999999999999966655
No 189
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.44 E-value=0.0012 Score=68.41 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=35.8
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
+.++.+|||.+||.|--+..||+. .-.|+|+|+++..+..+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~-----------G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ-----------GHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC-----------CCeEEEEccCHHHHHHHH
Confidence 356789999999999999999874 347999999999998764
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.41 E-value=0.00063 Score=78.73 Aligned_cols=117 Identities=12% Similarity=0.151 Sum_probs=88.9
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
.+..+||+|||-|..++++|.. .|.-.++|+|+...++..+...+.+.+..|+.++..|+..+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~---------~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~----- 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM---------NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND----- 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh---------CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-----
Confidence 4779999999999999999887 35678999999999999999999999999999988876543221
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
.....+|+|.+.-| |-|.+-.. ...+ -+|...|....++||+||.|-+.|=
T Consensus 413 --------------~~~~sv~~i~i~FP-----------DPWpKkrh-~krR--l~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 413 --------------LPNNSLDGIYILFP-----------DPWIKNKQ-KKKR--IFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred --------------cCcccccEEEEECC-----------CCCCCCCC-cccc--ccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 12356899988654 55543111 1111 2566778888999999999988763
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00054 Score=70.10 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=76.3
Q ss_pred hcC--CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----------CCceE
Q 004763 73 FLD--VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----------TANLI 140 (732)
Q Consensus 73 lLd--~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg----------~~ni~ 140 (732)
.|+ ++||...||+++|+|..|+.++.+++. +.+.++++|.-++-+...+.|+...- ...+.
T Consensus 75 ~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~-------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 75 YLDDHLQPGASFLDVGSGSGYLTACFARMVGA-------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHhhccCcceeecCCCccHHHHHHHHHhcC-------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 355 899999999999999999999999875 23345999999999999998886532 23455
Q ss_pred EEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004763 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (732)
Q Consensus 141 Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~r 220 (732)
++.+|.... ..+...||+|-|-+-- .++.++
T Consensus 148 ivvGDgr~g---------------------~~e~a~YDaIhvGAaa----------------------------~~~pq~ 178 (237)
T KOG1661|consen 148 IVVGDGRKG---------------------YAEQAPYDAIHVGAAA----------------------------SELPQE 178 (237)
T ss_pred EEeCCcccc---------------------CCccCCcceEEEccCc----------------------------cccHHH
Confidence 556665541 1223789999984321 124555
Q ss_pred HHhhccCCCEEEE
Q 004763 221 GISLLKVGGRIVY 233 (732)
Q Consensus 221 Al~lLKpGGrLVY 233 (732)
.+..|++||+|+.
T Consensus 179 l~dqL~~gGrlli 191 (237)
T KOG1661|consen 179 LLDQLKPGGRLLI 191 (237)
T ss_pred HHHhhccCCeEEE
Confidence 6778999999985
No 192
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.39 E-value=0.00092 Score=73.40 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=68.3
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC----------CceEEEecccc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT----------ANLIVTNHEAQ 147 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~----------~ni~Vt~~Da~ 147 (732)
++.+|||||||=||=..-.... ..+.+|++|++..-+.-++++.+.+.. -...+...|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~----------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA----------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CCCeEEEecCCCchhHHHHHhc----------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 8999999999999976555332 258999999999999988888743321 01233344433
Q ss_pred cCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004763 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (732)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKp 227 (732)
.- . +... .......||.|=|=- .-.-.-.-...-+.+|.++..+|+|
T Consensus 132 ~~-~--l~~~------------~~~~~~~FDvVScQF------------------alHY~Fese~~ar~~l~Nvs~~Lk~ 178 (331)
T PF03291_consen 132 SE-S--LREK------------LPPRSRKFDVVSCQF------------------ALHYAFESEEKARQFLKNVSSLLKP 178 (331)
T ss_dssp CS-H--HHCT------------SSSTTS-EEEEEEES-------------------GGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred cc-h--hhhh------------ccccCCCcceeehHH------------------HHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 20 0 0000 011135899997721 0011111112335699999999999
Q ss_pred CCEEEEEcCCC
Q 004763 228 GGRIVYSTCSM 238 (732)
Q Consensus 228 GGrLVYSTCSl 238 (732)
||+++-+|.+-
T Consensus 179 GG~FIgT~~d~ 189 (331)
T PF03291_consen 179 GGYFIGTTPDS 189 (331)
T ss_dssp EEEEEEEEE-H
T ss_pred CCEEEEEecCH
Confidence 99999987653
No 193
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.38 E-value=0.00057 Score=71.83 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=53.4
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp 150 (732)
.+++.++++|||+|||+|..|..|++.. ..|+|+|+|+..+..+..++.. .+++.+.+.|+..++
T Consensus 24 ~~~~~~~~~VLEiG~G~G~lt~~L~~~~-----------~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 24 AANVLEGDVVLEIGPGLGALTEPLLKRA-----------KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVD 88 (253)
T ss_pred hcCCCCcCEEEEeCCCCCHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCC
Confidence 3567789999999999999999998762 3599999999999988876533 467889999987754
No 194
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.33 E-value=0.00021 Score=82.11 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc----CCC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH----FPG 151 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~----fp~ 151 (732)
+++++.|||+|||||++...+++.|.. .+.||++|+-+-+ ..+++.....|.+. ++.
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv--------~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l 102 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPV--------GSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKL 102 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCC--------CceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHH
Confidence 478999999999999997777777653 6899999984422 12333222222211 100
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
.......+.|.||.|..-+-.| .|.. ++.....|-.+.|+-|..+|+.||.+
T Consensus 103 -----------------~k~l~t~~advVLhDgapnVg~-------~w~~----DA~~q~~L~l~al~LA~~~l~~~g~f 154 (780)
T KOG1098|consen 103 -----------------RKILKTWKADVVLHDGAPNVGG-------NWVQ----DAFQQACLTLRALKLATEFLAKGGTF 154 (780)
T ss_pred -----------------HHHHHhCCCcEEeecCCCccch-------hHHH----HHHHhhHHHHHHHHHHHHHHHhcCcc
Confidence 0011224569999986322222 2322 23334455667788889999999997
Q ss_pred EEEcCCCCCcCcHHHHHHHHH
Q 004763 232 VYSTCSMNPVENEAVVAEILR 252 (732)
Q Consensus 232 VYSTCSlnp~ENEaVV~~~L~ 252 (732)
|-= +.+.+.-.-+.+++.
T Consensus 155 vtk---vfrs~dy~~ll~v~~ 172 (780)
T KOG1098|consen 155 VTK---VFRSEDYNGLLRVFG 172 (780)
T ss_pred ccc---cccCCcchHHHHHHH
Confidence 643 344455444444443
No 195
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.0012 Score=68.87 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR 133 (732)
.+..+||++|-.|-.|++||..++. ..|+++|+|+.+++.++.++.-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~---------r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP---------RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc---------ceeeEeeccHHHHHHHHHhccc
Confidence 4678999999999999999998763 5799999999999999888753
No 196
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.19 E-value=0.00098 Score=73.07 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=52.1
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
+.+|++|||++|+|||+|-+|++. .+.|+|+|..+ |...+ +..+++.....|+..+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-----------G~~V~AVD~g~-----l~~~L--~~~~~V~h~~~d~fr~~p---- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-----------GMFVTAVDNGP-----MAQSL--MDTGQVEHLRADGFKFRP---- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-----------CCEEEEEechh-----cCHhh--hCCCCEEEEeccCcccCC----
Confidence 468999999999999999999875 35999999543 11111 234566666666544321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCC
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (732)
....||.|+||+-|...
T Consensus 267 -----------------~~~~vDwvVcDmve~P~ 283 (357)
T PRK11760 267 -----------------PRKNVDWLVCDMVEKPA 283 (357)
T ss_pred -----------------CCCCCCEEEEecccCHH
Confidence 03679999999975543
No 197
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.17 E-value=0.0032 Score=67.98 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=66.9
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe-cccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN-HEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~-~Da~~fp~~~~~~ 156 (732)
.|.+|||++|+.|..+..++.. +...|+|+|.+..-+....---+-+|........ .-...+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~----------GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp------ 178 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR----------GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP------ 178 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc----------CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc------
Confidence 5889999999999999887664 2468999998876544322211223333211111 1111111
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
. ...||.|+| .|++-+..+- ...|......|++||.||.=|-
T Consensus 179 ---------------~-~~~FDtVF~------MGVLYHrr~P----------------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 179 ---------------N-LGAFDTVFS------MGVLYHRRSP----------------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred ---------------c-cCCcCEEEE------eeehhccCCH----------------HHHHHHHHHhhCCCCEEEEEEe
Confidence 1 367999998 6777543321 2346666778999999998665
Q ss_pred CC
Q 004763 237 SM 238 (732)
Q Consensus 237 Sl 238 (732)
-+
T Consensus 221 vi 222 (315)
T PF08003_consen 221 VI 222 (315)
T ss_pred ee
Confidence 44
No 198
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0016 Score=69.13 Aligned_cols=85 Identities=24% Similarity=0.203 Sum_probs=68.8
Q ss_pred hhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004763 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (732)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp 150 (732)
+..+++++++.||.+++|.|+.|..|++. ...|+|+|+|+..+..|.+... ...|+.++++|+-.++
T Consensus 23 v~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-----------~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d 89 (259)
T COG0030 23 VEAANISPGDNVLEIGPGLGALTEPLLER-----------AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFD 89 (259)
T ss_pred HHhcCCCCCCeEEEECCCCCHHHHHHHhh-----------cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCc
Confidence 34568889999999999999999999987 4679999999999999988654 3578999999998754
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (732)
.-. ...+++|+.+-|+.=
T Consensus 90 ~~~--------------------l~~~~~vVaNlPY~I 107 (259)
T COG0030 90 FPS--------------------LAQPYKVVANLPYNI 107 (259)
T ss_pred chh--------------------hcCCCEEEEcCCCcc
Confidence 210 016899999999654
No 199
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.10 E-value=0.0015 Score=68.87 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=88.9
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecc
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHE 145 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg----~~ni~Vt~~D 145 (732)
+++++.+ ...+||=++.|-|+.+.+++..- +-..|+++|+|+.-++++++-+.... -+++.+...|
T Consensus 69 ~~~~~~~-~p~~VLiiGgG~G~~~~ell~~~---------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 69 PPLLLHP-NPKRVLIIGGGDGGTARELLKHP---------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHSS-ST-EEEEEESTTSHHHHHHTTST---------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred hHhhcCC-CcCceEEEcCCChhhhhhhhhcC---------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 3444444 46699999999999877775431 23689999999999999988765532 3689999999
Q ss_pred cccCCCCccCCCCCCCCccccccccccccc-cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004763 146 AQHFPGCRANKNFSSASDKGIESESNMGQL-LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (732)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~-~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~l 224 (732)
|..|-.- ... +||.|++|.+= ..|... . -.-.+.++.+.+.
T Consensus 139 g~~~l~~--------------------~~~~~yDvIi~D~~d-p~~~~~---------------~--l~t~ef~~~~~~~ 180 (246)
T PF01564_consen 139 GRKFLKE--------------------TQEEKYDVIIVDLTD-PDGPAP---------------N--LFTREFYQLCKRR 180 (246)
T ss_dssp HHHHHHT--------------------SSST-EEEEEEESSS-TTSCGG---------------G--GSSHHHHHHHHHH
T ss_pred hHHHHHh--------------------ccCCcccEEEEeCCC-CCCCcc---------------c--ccCHHHHHHHHhh
Confidence 9876421 113 89999999872 222110 0 1224667788889
Q ss_pred ccCCCEEEEEcCCCCCcCcHHHHHHHHHH
Q 004763 225 LKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 225 LKpGGrLVYSTCSlnp~ENEaVV~~~L~~ 253 (732)
|++||.++.-. -++..++..+..+.+.
T Consensus 181 L~~~Gv~v~~~--~~~~~~~~~~~~i~~t 207 (246)
T PF01564_consen 181 LKPDGVLVLQA--GSPFLHPELFKSILKT 207 (246)
T ss_dssp EEEEEEEEEEE--EETTTTHHHHHHHHHH
T ss_pred cCCCcEEEEEc--cCcccchHHHHHHHHH
Confidence 99999999765 3334566666665554
No 200
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.08 E-value=0.0059 Score=73.47 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCC----------------------------------CCCeEEEEEeCCHH
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGA----------------------------------LPNGMVIANDLDVQ 122 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~----------------------------------~p~G~VvAnDid~~ 122 (732)
+++..++|-+||+|...+.+|.+..+.. ++. .....|+|+|+|+.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~-pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~ 267 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIA-PGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPR 267 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCC-CCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHH
Confidence 6789999999999999888877643210 000 01247999999999
Q ss_pred HHHHHHHHHHHcCCCc-eEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhh
Q 004763 123 RCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK 201 (732)
Q Consensus 123 Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ 201 (732)
.+..+++|+++.|+.+ +.+.+.|+..++.. .....||.|++|||.-.. .
T Consensus 268 av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~-------------------~~~~~~d~IvtNPPYg~r-~---------- 317 (702)
T PRK11783 268 VIQAARKNARRAGVAELITFEVKDVADLKNP-------------------LPKGPTGLVISNPPYGER-L---------- 317 (702)
T ss_pred HHHHHHHHHHHcCCCcceEEEeCChhhcccc-------------------cccCCCCEEEECCCCcCc-c----------
Confidence 9999999999999864 77888888775421 112469999999995321 0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 202 WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 202 ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
+....+..+..++ -..++...+|++++.-|
T Consensus 318 ---~~~~~l~~lY~~l-g~~lk~~~~g~~~~llt 347 (702)
T PRK11783 318 ---GEEPALIALYSQL-GRRLKQQFGGWNAALFS 347 (702)
T ss_pred ---CchHHHHHHHHHH-HHHHHHhCCCCeEEEEe
Confidence 1112233444443 34455555888886544
No 201
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.06 E-value=0.0028 Score=64.36 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
++||.+|||++||-|..-.+|.+.. .-..+++|+|++.+..++. -| +.|+.+|+..-..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k----------~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~gL~---- 69 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK----------QVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDEGLA---- 69 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc----------CCeEEEEecCHHHHHHHHH----cC---CCEEECCHHHhHh----
Confidence 6889999999999999777665541 3578999999999876654 23 4577777764210
Q ss_pred CCCCCCCccccccccccccccccEEEe
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLC 182 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~ 182 (732)
......||.|++
T Consensus 70 ---------------~f~d~sFD~VIl 81 (193)
T PF07021_consen 70 ---------------DFPDQSFDYVIL 81 (193)
T ss_pred ---------------hCCCCCccEEeh
Confidence 123478999997
No 202
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0068 Score=67.41 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=91.9
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCC-------------------------------CCCCCCCeEEEEEeCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQST-------------------------------NPGALPNGMVIANDLD 120 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~-------------------------------~~~~~p~G~VvAnDid 120 (732)
++.+.+++..++|=-||+|...+.+|.+-.+-. +.. .+--.+++.|+|
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~-~~~~~~~G~Did 263 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG-KELPIIYGSDID 263 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc-CccceEEEecCC
Confidence 345778889999999999999888876543210 000 000158899999
Q ss_pred HHHHHHHHHHHHHcCCCc-eEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhh
Q 004763 121 VQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW 199 (732)
Q Consensus 121 ~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w 199 (732)
++.++.++.|+.+.|+.. |.+...|++.++.- ...+|.|+|+||.- ...
T Consensus 264 ~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~---------------------~~~~gvvI~NPPYG-eRl-------- 313 (381)
T COG0116 264 PRHIEGAKANARAAGVGDLIEFKQADATDLKEP---------------------LEEYGVVISNPPYG-ERL-------- 313 (381)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC---------------------CCcCCEEEeCCCcc-hhc--------
Confidence 999999999999999864 77888888876531 15799999999943 211
Q ss_pred hhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 200 RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 200 ~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
+.......+...+...+-+.++-.++.|++|-
T Consensus 314 -----g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 314 -----GSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred -----CChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 11122334777777787788888888888753
No 203
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.00 E-value=0.0023 Score=65.55 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=77.0
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE-EEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~-Vt~~Da~~fp~~~~~~ 156 (732)
..-.||.++||||.---.. . ..|.-.|+++|.++++-+.+...++...-.++. ++.+++.++|.+.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy-~---------~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--- 142 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFY-P---------WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--- 142 (252)
T ss_pred CccceEEecccCCCCcccc-c---------CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc---
Confidence 3446899999999742211 1 125679999999999999998888766555665 7788888877542
Q ss_pred CCCCCCccccccccccccccccEEEec-CCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCD-VPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~D-vPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
..++|.|+|- +=|| +.-+.++|...-++|||||++++-
T Consensus 143 -----------------d~s~DtVV~TlvLCS-----------------------ve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 143 -----------------DGSYDTVVCTLVLCS-----------------------VEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred -----------------cCCeeeEEEEEEEec-----------------------cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3789999873 2333 345678899999999999999984
No 204
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.99 E-value=0.0024 Score=71.41 Aligned_cols=104 Identities=22% Similarity=0.202 Sum_probs=74.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCCccCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n--i~Vt~~Da~~fp~~~~~~ 156 (732)
+-+|||.-||+|--++..+.-+.+ ...|++||+|+..+++++.|++.+++.. +.+.+.||..+-.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~--------~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----- 116 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAG--------VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----- 116 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SS--------ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-----
T ss_pred CceEEeccccccHHHHHHHHHcCC--------CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-----
Confidence 458999999999999988776543 4689999999999999999999999875 8888989876321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
.....||.|=+||= |+- .-.|..|++.++.||. +|.||
T Consensus 117 ---------------~~~~~fD~IDlDPf----GSp----------------------~pfldsA~~~v~~gGl-l~vTa 154 (377)
T PF02005_consen 117 ---------------SRQERFDVIDLDPF----GSP----------------------APFLDSALQAVKDGGL-LCVTA 154 (377)
T ss_dssp ---------------HSTT-EEEEEE--S----S------------------------HHHHHHHHHHEEEEEE-EEEEE
T ss_pred ---------------hccccCCEEEeCCC----CCc----------------------cHhHHHHHHHhhcCCE-EEEec
Confidence 12378999999984 320 2468899999999875 56677
Q ss_pred C
Q 004763 237 S 237 (732)
Q Consensus 237 S 237 (732)
|
T Consensus 155 T 155 (377)
T PF02005_consen 155 T 155 (377)
T ss_dssp -
T ss_pred c
Confidence 7
No 205
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.96 E-value=0.0026 Score=72.59 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=85.2
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
+..|||++||.|-.+...+.+.... .....|+|+|.++.....|++.+++.+. ..|.|+++|...+..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~-----~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l------ 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARA-----GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL------ 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHH-----CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHh-----CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC------
Confidence 5689999999999876665543211 1246999999999999999888888886 569999998877421
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
..++|.|+... .|. .....+-.+.|..+-++|||||.++=+.++
T Consensus 256 ----------------pekvDIIVSEl----LGs----------------fg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t 299 (448)
T PF05185_consen 256 ----------------PEKVDIIVSEL----LGS----------------FGDNELSPECLDAADRFLKPDGIMIPSSYT 299 (448)
T ss_dssp ----------------SS-EEEEEE-------BT----------------TBTTTSHHHHHHHGGGGEEEEEEEESSEEE
T ss_pred ----------------CCceeEEEEec----cCC----------------ccccccCHHHHHHHHhhcCCCCEEeCcchh
Confidence 25899999732 121 122234456788888999999999944344
Q ss_pred --CCCcCcHHHHHHHH
Q 004763 238 --MNPVENEAVVAEIL 251 (732)
Q Consensus 238 --lnp~ENEaVV~~~L 251 (732)
+.|++.+.+-..+.
T Consensus 300 ~ylaPiss~~l~~~~~ 315 (448)
T PF05185_consen 300 SYLAPISSPKLYQEVR 315 (448)
T ss_dssp EEEEEEE-HHHHHHHH
T ss_pred hEEEEeeCHHHHHHHH
Confidence 66888887666554
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.94 E-value=0.0032 Score=65.20 Aligned_cols=132 Identities=23% Similarity=0.236 Sum_probs=92.8
Q ss_pred HHHHHHHhhcccccCcEEE-ccccccchhhhcCC-------CC-CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEE
Q 004763 44 LERFHKFLKLENEIGNITR-QEAVSMVPPLFLDV-------QP-DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMV 114 (732)
Q Consensus 44 l~~~~~~l~~~~~~G~i~~-Qd~~Smlp~llLd~-------~p-g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~V 114 (732)
+..+.+-|..-++.=+++. -+...|+.-+++|. .. +.+|+|+++|+|-=..-+|-+ .|...|
T Consensus 24 l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~---------~p~~~v 94 (215)
T COG0357 24 LEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA---------FPDLKV 94 (215)
T ss_pred HHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh---------ccCCcE
Confidence 4444444444344444444 44556666666541 22 689999999999888888733 246779
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCcccccccccccccc-ccEEEecCCCCCCCccc
Q 004763 115 IANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL-FDRVLCDVPCSGDGTLR 193 (732)
Q Consensus 115 vAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~-FDrVL~DvPCSGdGtlr 193 (732)
+-+|...+|+..|+.-.+.++.+|+.+.+..+..|..- .. ||.|++=+=++
T Consensus 95 tLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----------------------~~~~D~vtsRAva~------ 146 (215)
T COG0357 95 TLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----------------------KKQYDVVTSRAVAS------ 146 (215)
T ss_pred EEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----------------------cccCcEEEeehccc------
Confidence 99999999999999999999999999999988776421 12 99998733211
Q ss_pred cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 194 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 194 k~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
+ -.++.-+..++|+||.++
T Consensus 147 -------------------L-~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 147 -------------------L-NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -------------------h-HHHHHHHHHhcccCCcch
Confidence 1 236677888999988865
No 207
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.84 E-value=0.0047 Score=65.39 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=64.1
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
..+++||++||-|+.|..++.+. ..|+|.|+|..+...|.+ -| +.+...+ ++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-----------~~v~aTE~S~~Mr~rL~~----kg---~~vl~~~--~w~------- 146 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-----------KEVYATEASPPMRWRLSK----KG---FTVLDID--DWQ------- 146 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-----------ceEEeecCCHHHHHHHHh----CC---CeEEehh--hhh-------
Confidence 35789999999999999998874 469999999888765543 33 3333222 221
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
....+||.|-|= ++ +.-+..-..+|+...+.|+|+|+++.+
T Consensus 147 --------------~~~~~fDvIscL-------------Nv---------LDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 147 --------------QTDFKFDVISCL-------------NV---------LDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred --------------ccCCceEEEeeh-------------hh---------hhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 112579999871 11 111223356888999999999999865
No 208
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.001 Score=64.58 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=62.5
Q ss_pred ccccchhhhc--CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 004763 65 AVSMVPPLFL--DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT 142 (732)
Q Consensus 65 ~~Smlp~llL--d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt 142 (732)
++||+-...- +--.|..++|+|||.|..+++. .+.. ...|+++|+++..++...+|+..+-+. +.+.
T Consensus 33 AasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~-sm~~---------~e~vlGfDIdpeALEIf~rNaeEfEvq-idlL 101 (185)
T KOG3420|consen 33 AASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAF-SMPK---------NESVLGFDIDPEALEIFTRNAEEFEVQ-IDLL 101 (185)
T ss_pred HHHHHHHHHhhhccccCcchhhhcCchhhhHHHh-hcCC---------CceEEeeecCHHHHHHHhhchHHhhhh-hhee
Confidence 4566544332 2246899999999999987443 2322 468999999999999999998876542 2344
Q ss_pred ecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004763 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (732)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (732)
++|.... ....+.||.++.||| .||
T Consensus 102 qcdildl---------------------e~~~g~fDtaviNpp---FGT 126 (185)
T KOG3420|consen 102 QCDILDL---------------------ELKGGIFDTAVINPP---FGT 126 (185)
T ss_pred eeeccch---------------------hccCCeEeeEEecCC---CCc
Confidence 4433221 122378999999999 555
No 209
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.70 E-value=0.0093 Score=61.88 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=78.7
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
..+..+..+|+|++.|.|..+..++..- |.-+++..|. +.-+..+.. ..++.++.+|... .+
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~---------P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~--~~ 156 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAY---------PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD--PL 156 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHS---------TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT--CC
T ss_pred cccccCccEEEeccCcchHHHHHHHHHC---------CCCcceeecc-Hhhhhcccc------ccccccccccHHh--hh
Confidence 4467778899999999999999998763 5668899998 554444433 6778888887642 11
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC--CE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG--GR 230 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpG--Gr 230 (732)
.. +|.|++ ..+.+.|+... -..||+++...|+|| |+
T Consensus 157 ---------------------P~-~D~~~l-------------~~vLh~~~d~~-------~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 157 ---------------------PV-ADVYLL-------------RHVLHDWSDED-------CVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp ---------------------SS-ESEEEE-------------ESSGGGS-HHH-------HHHHHHHHHHHSEECTTEE
T ss_pred ---------------------cc-ccceee-------------ehhhhhcchHH-------HHHHHHHHHHHhCCCCCCe
Confidence 13 899987 12445555433 478999999999999 99
Q ss_pred EEEEcCCCCCcCcHHHH
Q 004763 231 IVYSTCSMNPVENEAVV 247 (732)
Q Consensus 231 LVYSTCSlnp~ENEaVV 247 (732)
|+..-.-+.....+...
T Consensus 195 llI~e~~~~~~~~~~~~ 211 (241)
T PF00891_consen 195 LLIIEMVLPDDRTGPPS 211 (241)
T ss_dssp EEEEEEEECSSSSSHHH
T ss_pred EEEEeeccCCCCCCchH
Confidence 99887766555554433
No 210
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.68 E-value=0.02 Score=61.66 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=89.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce-EEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL-IVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni-~Vt~~Da~~fp~~~~~~~ 157 (732)
.-+|||+|||+|-.-+-+++.... . .-.|.-+|.++.-++.-++.++..|..++ .+++.||.+...+.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~------~-~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~---- 204 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPE------R-PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA---- 204 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCC------C-CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh----
Confidence 459999999999876555544221 1 24889999999999999999999999887 89999987743221
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
.-....+.+++ +|...--|| ..+-.+.|.-....+.|||.|||+.=-
T Consensus 205 --------------~l~p~P~l~iV------sGL~ElF~D-------------n~lv~~sl~gl~~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 205 --------------ALDPAPTLAIV------SGLYELFPD-------------NDLVRRSLAGLARALEPGGYLIYTGQP 251 (311)
T ss_pred --------------ccCCCCCEEEE------ecchhhCCc-------------HHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 01134677776 243221111 012234566667789999999998767
Q ss_pred CCCcCcHHHHHHHHHHC
Q 004763 238 MNPVENEAVVAEILRKC 254 (732)
Q Consensus 238 lnp~ENEaVV~~~L~~~ 254 (732)
+||. -..|+.+|..|
T Consensus 252 wHPQ--le~IAr~LtsH 266 (311)
T PF12147_consen 252 WHPQ--LEMIARVLTSH 266 (311)
T ss_pred CCcc--hHHHHHHHhcc
Confidence 7774 24678888765
No 211
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.66 E-value=0.014 Score=61.17 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=72.9
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc-CCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~-fp~~~~~~ 156 (732)
.|.+|| |-|=+-.|...+.+.+ +...|+.+|+|..-+..+.+.+++.|.+ +....+|.++ +|.
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~--------~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~----- 107 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTG--------LPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPE----- 107 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT----------SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---T-----
T ss_pred cCCEEE--EEcCCcHHHHHHHhhC--------CCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCH-----
Confidence 367776 5556666655555443 2468999999999999999999999988 8888998876 221
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
.-..+||.++.|||.+-.|. .-.|.||++.||.-|..+|-.+
T Consensus 108 ---------------~~~~~fD~f~TDPPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 108 ---------------ELRGKFDVFFTDPPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp ---------------TTSS-BSEEEE---SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE
T ss_pred ---------------HHhcCCCEEEeCCCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEE
Confidence 11378999999999666553 2368899999998775666656
Q ss_pred CCCCc-CcH-HHHHHHHHHCC
Q 004763 237 SMNPV-ENE-AVVAEILRKCE 255 (732)
Q Consensus 237 Slnp~-ENE-aVV~~~L~~~~ 255 (732)
|..+. -.+ .-|+++|.+.|
T Consensus 150 ~~~~~s~~~~~~~Q~~l~~~g 170 (243)
T PF01861_consen 150 THKEASPDKWLEVQRFLLEMG 170 (243)
T ss_dssp -TTT--HHHHHHHHHHHHTS-
T ss_pred ecCcCcHHHHHHHHHHHHHCC
Confidence 65442 122 35788887665
No 212
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.52 E-value=0.0043 Score=64.82 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=33.0
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHH
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN 125 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~ 125 (732)
-.|..|||++||||++|..+++. +.+.|+|+|++...+.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~----------ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK----------GAKEVYGVDVGYNQLA 112 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc----------CCCEEEEEeCCHHHHH
Confidence 36889999999999999998875 2478999999997554
No 213
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.49 E-value=0.016 Score=60.11 Aligned_cols=143 Identities=19% Similarity=0.204 Sum_probs=89.1
Q ss_pred cCcEEEccccccchhhhcCCCC--CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004763 57 IGNITRQEAVSMVPPLFLDVQP--DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (732)
Q Consensus 57 ~G~i~~Qd~~Smlp~llLd~~p--g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl 134 (732)
+-.+.+|-.-+.-...+|++.+ ...|||++||+|--+..|.+. .-..+++|+|+.+++.+.+. .+
T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-----------Gh~wiGvDiSpsML~~a~~~--e~ 93 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-----------GHQWIGVDISPSMLEQAVER--EL 93 (270)
T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-----------CceEEeecCCHHHHHHHHHh--hh
Confidence 3445667776666777777766 679999999999866655332 34789999999999988862 22
Q ss_pred CCCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHH
Q 004763 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQ 214 (732)
Q Consensus 135 g~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ 214 (732)
- ..++. +|-- ....+..+.||.|+.= +. + .|--..-..+|.-+
T Consensus 94 e-gdlil--~DMG--------------------~GlpfrpGtFDg~ISI------SA------v--QWLcnA~~s~~~P~ 136 (270)
T KOG1541|consen 94 E-GDLIL--CDMG--------------------EGLPFRPGTFDGVISI------SA------V--QWLCNADKSLHVPK 136 (270)
T ss_pred h-cCeee--eecC--------------------CCCCCCCCccceEEEe------ee------e--eeecccCccccChH
Confidence 2 12221 1211 1123445889988741 00 0 23222222334334
Q ss_pred HHHH---HHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHH
Q 004763 215 VQIA---MRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 215 ~~IL---~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~ 253 (732)
.+|+ ...+..|+.|++-|+= ...||++.+..++..
T Consensus 137 ~Rl~~FF~tLy~~l~rg~raV~Q----fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 137 KRLLRFFGTLYSCLKRGARAVLQ----FYPENEAQIDMIMQQ 174 (270)
T ss_pred HHHHHHhhhhhhhhccCceeEEE----ecccchHHHHHHHHH
Confidence 4443 3456789999999863 345899998888865
No 214
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.015 Score=62.55 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=84.1
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecc
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHE 145 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg----~~ni~Vt~~D 145 (732)
++++..++| .+||=++-|.|+.+-.++... +--+++++|+|++-+.+.+.-+.... -+++.+...|
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~---------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D 138 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL---------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD 138 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcC---------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence 344556677 699999999999988887653 24689999999999998888765443 3567788888
Q ss_pred cccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004763 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (732)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lL 225 (732)
+..|-.- ...+||+|++|.- |+. ... .. -+.....+.+.+.|
T Consensus 139 g~~~v~~--------------------~~~~fDvIi~D~t---dp~-gp~------------~~--Lft~eFy~~~~~~L 180 (282)
T COG0421 139 GVEFLRD--------------------CEEKFDVIIVDST---DPV-GPA------------EA--LFTEEFYEGCRRAL 180 (282)
T ss_pred HHHHHHh--------------------CCCcCCEEEEcCC---CCC-Ccc------------cc--cCCHHHHHHHHHhc
Confidence 8775321 1147999999962 221 011 11 13346677888899
Q ss_pred cCCCEEEEEcCC
Q 004763 226 KVGGRIVYSTCS 237 (732)
Q Consensus 226 KpGGrLVYSTCS 237 (732)
+++|.+|.-+=|
T Consensus 181 ~~~Gi~v~q~~~ 192 (282)
T COG0421 181 KEDGIFVAQAGS 192 (282)
T ss_pred CCCcEEEEecCC
Confidence 999999987444
No 215
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.32 E-value=0.0026 Score=65.66 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=66.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccC-CCCccC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHF-PGCRAN 155 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~f-p~~~~~ 155 (732)
--+.|+|..+|-||-|+|.|.. .-.|+|+|+|+-++++++||++-.|+++ |.++++|.... ..+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-----------~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l--- 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-----------GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL--- 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-----------CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH---
Confidence 3568889999999999988664 3579999999999999999999999875 66777775431 111
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccC
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~ 195 (732)
......+|.|..-+|=+|.|-++..
T Consensus 160 ---------------q~~K~~~~~vf~sppwggp~y~~~~ 184 (263)
T KOG2730|consen 160 ---------------KADKIKYDCVFLSPPWGGPSYLRAD 184 (263)
T ss_pred ---------------hhhhheeeeeecCCCCCCcchhhhh
Confidence 1112347788888898888877643
No 216
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.31 E-value=0.029 Score=58.59 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=74.0
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH------------HHcCCCceEEE
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT------------KRMCTANLIVT 142 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~------------kRlg~~ni~Vt 142 (732)
.+.++.+||+..||-|--...||+. .-.|+|+|+++..+..+.+.. ++....++.+.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~-----------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 108 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK-----------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY 108 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC-----------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE
Confidence 3346789999999999999999875 246999999999998875521 11222356777
Q ss_pred ecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004763 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (732)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl 222 (732)
++|...++.. ......||.|.- - ...-.+ .|+. -.+.+.+..
T Consensus 109 ~gD~f~l~~~------------------~~~~~~fD~VyD-r--a~~~Al--pp~~---------------R~~Y~~~l~ 150 (226)
T PRK13256 109 VADIFNLPKI------------------ANNLPVFDIWYD-R--GAYIAL--PNDL---------------RTNYAKMML 150 (226)
T ss_pred EccCcCCCcc------------------ccccCCcCeeee-e--hhHhcC--CHHH---------------HHHHHHHHH
Confidence 7777664320 001246888762 1 111111 2222 345677888
Q ss_pred hhccCCCEEEEEcCCC
Q 004763 223 SLLKVGGRIVYSTCSM 238 (732)
Q Consensus 223 ~lLKpGGrLVYSTCSl 238 (732)
++|+|||+++.-|-..
T Consensus 151 ~lL~pgg~llll~~~~ 166 (226)
T PRK13256 151 EVCSNNTQILLLVMEH 166 (226)
T ss_pred HHhCCCcEEEEEEEec
Confidence 8999999999876443
No 217
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.20 E-value=0.018 Score=61.27 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=63.1
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPG 151 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~ 151 (732)
-.+++|+|.||.++-|||+.|.-|++. ...|||+++|+..+..|....+.... ..+.|..+|....
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~-----------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-- 119 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEA-----------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-- 119 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHh-----------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC--
Confidence 457899999999999999999999987 46899999999999988887654432 2477777775432
Q ss_pred CccCCCCCCCCccccccccccccccccEEEecCCC
Q 004763 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (732)
....||.++.+.|.
T Consensus 120 ---------------------d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 ---------------------DLPRFDGCVSNLPY 133 (315)
T ss_pred ---------------------CCcccceeeccCCc
Confidence 12569999998774
No 218
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.15 E-value=0.019 Score=57.72 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=38.7
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.++.+|||++||+|..+..+++.. ...++++|+++..+..+.. .++.+...|+..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~----------~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~ 66 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK----------QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDE 66 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc----------CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhh
Confidence 478899999999999887776542 2357999999987766532 134455555543
No 219
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.17 Score=51.32 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=93.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
...+|+++||+|-.++.|+..+. |....+|.|+++..++.-.+-++.++.. +.++..|... .
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~--------~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~--~------- 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG--------PQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLS--G------- 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC--------CCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHh--h-------
Confidence 56799999999999999999876 3578999999999999888877766543 5555554332 1
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCC--ccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDG--TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG--tlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
....++|+++.+||.--+- -+. ...+-..|. .+..-...--++|...=.+|.|-|.+...+|
T Consensus 106 -------------l~~~~VDvLvfNPPYVpt~~~~i~-~~~i~~a~a--GG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 106 -------------LRNESVDVLVFNPPYVPTSDEEIG-DEGIASAWA--GGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred -------------hccCCccEEEECCCcCcCCcccch-hHHHHHHHh--cCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 1227899999999854321 110 011112232 1222233345677777788999998888777
Q ss_pred CCCCcCcHHHHHHHHHHCCCcEE
Q 004763 237 SMNPVENEAVVAEILRKCEGSVE 259 (732)
Q Consensus 237 Slnp~ENEaVV~~~L~~~~~~ve 259 (732)
.-|. ..-|-.+++..+-.+.
T Consensus 170 ~~N~---p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 170 RANK---PKEILKILEKKGYGVR 189 (209)
T ss_pred hhcC---HHHHHHHHhhccccee
Confidence 7642 3334447776554333
No 220
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.06 E-value=0.033 Score=64.48 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=87.2
Q ss_pred ccCcEEEccccccchhhhcCCC--CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004763 56 EIGNITRQEAVSMVPPLFLDVQ--PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~--pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR 133 (732)
..|.++.-..++.+.+.++++. |+..|.|||||+|+...+....++.. ...-.+++.+.......+.+.|+.-
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~-----qe~~~~~gqe~~~~~~~~a~mnm~l 267 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEK-----TSLVSYYGQEINHTTYNLCRMNMIL 267 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhccc-----ccceeEEEEeCchHHHHHHHHHHHH
Confidence 4555555444455545556654 77899999999999876654443211 1135689999999888877777644
Q ss_pred cCC--CceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCC---CccccChhhhhhccccccc
Q 004763 134 MCT--ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD---GTLRKAPDIWRKWNVGLGN 208 (732)
Q Consensus 134 lg~--~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd---Gtlrk~pd~w~~ws~~~~~ 208 (732)
.+. ..+.+-.+|...-|. ......||.|+++||-+.. |.+....+..+.|......
T Consensus 268 ~~~~~~t~~~~~~dtl~~~d-------------------~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~ 328 (501)
T TIGR00497 268 HNIDYANFNIINADTLTTKE-------------------WENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLA 328 (501)
T ss_pred cCCCccccCcccCCcCCCcc-------------------ccccccCCEEeecCCcccccccccccccccccchhcccCCC
Confidence 432 122222232211000 0112569999999998764 1111000111112112222
Q ss_pred chHHHHHHHHHHHHhhccCCCEEE
Q 004763 209 GLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 209 ~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
.+.......+.+++..|++||+..
T Consensus 329 ~~~~~~~afi~h~~~~L~~gG~~a 352 (501)
T TIGR00497 329 PNSKADLAFVLHALYVLGQEGTAA 352 (501)
T ss_pred CCchhhHHHHHHHHHhcCCCCeEE
Confidence 344556778888999999999743
No 221
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.06 E-value=0.011 Score=63.31 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=55.6
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
+|+|+|||.|+.+.-+..+ + --.|+|+|+++..+..+.+|.. +. +.+.|...+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G---------~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~-------- 57 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G---------FEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEK-------- 57 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C---------CEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchh--------
Confidence 6999999999998776543 1 3578999999999999988753 11 344555443210
Q ss_pred CCccccccccccccccccEEEecCCCCCCCcccc
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (732)
.. ...+|.|+.++||-+.-...+
T Consensus 58 ----------~~-~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 58 ----------DF-IPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred ----------hc-CCCCCEEEeCCCChhhhHHhh
Confidence 00 246999999999998655443
No 222
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.04 E-value=0.016 Score=61.41 Aligned_cols=65 Identities=26% Similarity=0.323 Sum_probs=54.5
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp 150 (732)
.+++.+++.|||+++|+|..|..|++. ...|+|+|+|+..+..|.+... ..+++.+++.|+..+.
T Consensus 25 ~~~~~~~~~VlEiGpG~G~lT~~L~~~-----------~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 25 ALDLSEGDTVLEIGPGPGALTRELLKR-----------GKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHTCGTTSEEEEESSTTSCCHHHHHHH-----------SSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred hcCCCCCCEEEEeCCCCccchhhHhcc-----------cCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 457779999999999999999999887 2689999999999998887544 4578999999988754
No 223
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.02 E-value=0.032 Score=57.84 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH------------cCCCceEEE
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR------------MCTANLIVT 142 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR------------lg~~ni~Vt 142 (732)
...++.+||+-.||.|--...||+. .-.|+|+|+++..++.+.+.... ....+|.+.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~-----------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ-----------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT-----------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC-----------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 4677889999999999988888875 35899999999999887432211 012346677
Q ss_pred ecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004763 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (732)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl 222 (732)
++|...++.- ..+.||.|.= |...-.| .|+.+.+ -.++..
T Consensus 103 ~gDfF~l~~~--------------------~~g~fD~iyD---r~~l~Al--pp~~R~~---------------Ya~~l~ 142 (218)
T PF05724_consen 103 CGDFFELPPE--------------------DVGKFDLIYD---RTFLCAL--PPEMRER---------------YAQQLA 142 (218)
T ss_dssp ES-TTTGGGS--------------------CHHSEEEEEE---CSSTTTS---GGGHHH---------------HHHHHH
T ss_pred EcccccCChh--------------------hcCCceEEEE---ecccccC--CHHHHHH---------------HHHHHH
Confidence 7776654321 1257999972 2222222 3444333 467788
Q ss_pred hhccCCCEEEEEcCCCC
Q 004763 223 SLLKVGGRIVYSTCSMN 239 (732)
Q Consensus 223 ~lLKpGGrLVYSTCSln 239 (732)
++|+|||++++.|-...
T Consensus 143 ~ll~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 143 SLLKPGGRGLLITLEYP 159 (218)
T ss_dssp HCEEEEEEEEEEEEES-
T ss_pred HHhCCCCcEEEEEEEcC
Confidence 89999999666554443
No 224
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.02 E-value=0.026 Score=59.21 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=70.5
Q ss_pred CCCCCC-EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 75 DVQPDH-FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 75 d~~pg~-~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
...++| ..||++||+| +|+.+++-.. -.|||.|++..++..++..- ++ ..++-...+..-
T Consensus 29 ~~~~~h~~a~DvG~G~G-qa~~~iae~~----------k~VIatD~s~~mL~~a~k~~-----~~--~y~~t~~~ms~~- 89 (261)
T KOG3010|consen 29 SRTEGHRLAWDVGTGNG-QAARGIAEHY----------KEVIATDVSEAMLKVAKKHP-----PV--TYCHTPSTMSSD- 89 (261)
T ss_pred hhCCCcceEEEeccCCC-cchHHHHHhh----------hhheeecCCHHHHHHhhcCC-----Cc--ccccCCcccccc-
Confidence 345566 8999999999 6555544322 47999999999998665421 11 011111111100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH-HHHHHHHHHhhccCCC-EE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL-QVQIAMRGISLLKVGG-RI 231 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~l-Q~~IL~rAl~lLKpGG-rL 231 (732)
...+......++|.|+| + ..+|-. -.+....+.++||+.| .+
T Consensus 90 ------------~~v~L~g~e~SVDlI~~-A-----------------------qa~HWFdle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 90 ------------EMVDLLGGEESVDLITA-A-----------------------QAVHWFDLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred ------------ccccccCCCcceeeehh-h-----------------------hhHHhhchHHHHHHHHHHcCCCCCEE
Confidence 00011112478999987 1 111211 1345566778888766 54
Q ss_pred EEEcCCC-CCcCcHHHHHHHHHHCC
Q 004763 232 VYSTCSM-NPVENEAVVAEILRKCE 255 (732)
Q Consensus 232 VYSTCSl-np~ENEaVV~~~L~~~~ 255 (732)
..- |-. +.+-+.++..-.++.+.
T Consensus 134 avW-~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 134 AVW-NYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred EEE-EccCCCcCCHHHHHHHHHHhh
Confidence 422 222 78888888887777653
No 225
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.023 Score=62.74 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=86.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
.-+|||.-+|+|--.+-+|--+. .-.|++||++++.+++++.|++++...+..+++.||..+..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~---------~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~------- 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG---------VVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH------- 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC---------ccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH-------
Confidence 67999999999998887765432 23899999999999999999998856677788888766421
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (732)
.....||.|=+||= |+ | .-.+..|++.++.||.|..+.--.
T Consensus 117 -------------~~~~~fd~IDiDPF----GS------------P----------aPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 117 -------------ELHRAFDVIDIDPF----GS------------P----------APFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred -------------hcCCCccEEecCCC----CC------------C----------chHHHHHHHHhhcCCEEEEEeccc
Confidence 11267999999984 32 1 125788999999999887653334
Q ss_pred CCcCcHHHHHHHHHHCC
Q 004763 239 NPVENEAVVAEILRKCE 255 (732)
Q Consensus 239 np~ENEaVV~~~L~~~~ 255 (732)
.+...- .-...+++++
T Consensus 158 a~L~G~-~p~~c~rkY~ 173 (380)
T COG1867 158 APLCGS-YPRKCRRKYG 173 (380)
T ss_pred ccccCC-ChHHHHHHhc
Confidence 444332 3345556654
No 226
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.82 E-value=0.035 Score=55.27 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=38.5
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEec
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC---TANLIVTNH 144 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg---~~ni~Vt~~ 144 (732)
...+.+||+++||.|--++.++.+.+ ...|++-|.++ -+..+++|+++++ ..++.+...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~---------~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L 104 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG---------AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL 104 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T----------SEEEEEE-S--HHHHHHHHHHTT--------EEEE-
T ss_pred hcCCceEEEECCccchhHHHHHhccC---------CceEEEeccch-hhHHHHHHHHhccccccccccCcEE
Confidence 45688999999999977666665522 46899999999 9999999998876 234444433
No 227
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.81 E-value=0.03 Score=52.84 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=48.0
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da 146 (732)
.|||++|+.|..+..++... +.+.|+|+|.++..+..|+.+++.++..++.+.+...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~---------~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG---------AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhC---------CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 48999999999999887752 3569999999999999999999988887777766543
No 228
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.81 E-value=0.026 Score=55.38 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=56.6
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004763 115 IANDLDVQRCNLLIHQTKRMC---TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (732)
Q Consensus 115 vAnDid~~Rl~~L~~n~kRlg---~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (732)
+|+|+++.+++.++.+.+..+ ..++.+..+|+..+|. ....||.|++. .+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~---------------------~~~~fD~v~~~-----~~- 53 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF---------------------DDCEFDAVTMG-----YG- 53 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC---------------------CCCCeeEEEec-----ch-
Confidence 478999999999877654322 3568888888887652 12579999961 11
Q ss_pred cccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004763 192 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (732)
Q Consensus 192 lrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (732)
++.-+ -..+.|++..++|||||+++....+.
T Consensus 54 l~~~~----------------d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 54 LRNVV----------------DRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred hhcCC----------------CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 11111 23578899999999999998775553
No 229
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.69 E-value=0.21 Score=51.44 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=83.7
Q ss_pred EEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCccCCCCCC
Q 004763 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 82 VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
|+|+||==|.....|++. ...-+|+|+|+++.=+..++.++++.|.. .+.+..+|+..- +.
T Consensus 1 vaDIGtDHgyLpi~L~~~---------~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~--l~------- 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN---------GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV--LK------- 62 (205)
T ss_dssp EEEET-STTHHHHHHHHT---------TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----------
T ss_pred CceeccchhHHHHHHHhc---------CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc--cC-------
Confidence 789999999999888764 13568999999999999999999999964 577888876541 10
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCC
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp 240 (732)
.....|.|+. +|.|- .+-.+||.++...++...++|. | |
T Consensus 63 ------------~~e~~d~ivI----AGMGG--------------------~lI~~ILe~~~~~~~~~~~lIL--q---P 101 (205)
T PF04816_consen 63 ------------PGEDVDTIVI----AGMGG--------------------ELIIEILEAGPEKLSSAKRLIL--Q---P 101 (205)
T ss_dssp ------------GGG---EEEE----EEE-H--------------------HHHHHHHHHTGGGGTT--EEEE--E---E
T ss_pred ------------CCCCCCEEEE----ecCCH--------------------HHHHHHHHhhHHHhccCCeEEE--e---C
Confidence 1123677776 46552 3567899999988877778876 3 4
Q ss_pred cCcHHHHHHHHHHCCCcEEEEe
Q 004763 241 VENEAVVAEILRKCEGSVELVD 262 (732)
Q Consensus 241 ~ENEaVV~~~L~~~~~~velvd 262 (732)
.-+...+..+|..++ +.+++
T Consensus 102 ~~~~~~LR~~L~~~g--f~I~~ 121 (205)
T PF04816_consen 102 NTHAYELRRWLYENG--FEIID 121 (205)
T ss_dssp SS-HHHHHHHHHHTT--EEEEE
T ss_pred CCChHHHHHHHHHCC--CEEEE
Confidence 478999999999876 55655
No 230
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.59 E-value=0.062 Score=59.05 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=74.4
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCCccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~Da~~fp~~~~~ 155 (732)
-.+..|||++||+|-.++-.|.+ +...|+|+|.+.-. ..+...++.++..+ +.++.+....+ .
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA----------GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi-~---- 122 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA----------GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI-E---- 122 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh----------CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE-e----
Confidence 35889999999999988887776 25799999987666 77888888888876 55665544432 1
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.+..++|.|+.. -.|.. +-+-...-.+|-.==+.|++||.|.=++
T Consensus 123 ----------------LP~eKVDiIvSE----WMGy~---------------Ll~EsMldsVl~ARdkwL~~~G~i~P~~ 167 (346)
T KOG1499|consen 123 ----------------LPVEKVDIIVSE----WMGYF---------------LLYESMLDSVLYARDKWLKEGGLIYPDR 167 (346)
T ss_pred ----------------cCccceeEEeeh----hhhHH---------------HHHhhhhhhhhhhhhhccCCCceEcccc
Confidence 113789999861 11210 0001112223333346899999999899
Q ss_pred CCCC
Q 004763 236 CSMN 239 (732)
Q Consensus 236 CSln 239 (732)
|++.
T Consensus 168 a~l~ 171 (346)
T KOG1499|consen 168 ATLY 171 (346)
T ss_pred ceEE
Confidence 9864
No 231
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.012 Score=66.85 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=84.7
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE-EEecccccCC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFP 150 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~-Vt~~Da~~fp 150 (732)
.+-.-.++-+|||.-+|+|--++.-|..+.+ -+.|+|||.+...+.....|++.+++.++. ....||...-
T Consensus 103 ~~~~~~~~l~vLealsAtGlrslRya~El~~--------v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM 174 (525)
T KOG1253|consen 103 LLKREEKSLRVLEALSATGLRSLRYAKELPG--------VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLM 174 (525)
T ss_pred hhhhccCcchHHHHhhhhhHHHHHHHHHhcc--------hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHH
Confidence 3344567789999999999999999888764 579999999999999999999998876644 4445554310
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
.........||.|=+||= |+- ...|+.|++.++.||.
T Consensus 175 -----------------~~~~~~~~~FDvIDLDPy----Gs~----------------------s~FLDsAvqav~~gGL 211 (525)
T KOG1253|consen 175 -----------------YEHPMVAKFFDVIDLDPY----GSP----------------------SPFLDSAVQAVRDGGL 211 (525)
T ss_pred -----------------HhccccccccceEecCCC----CCc----------------------cHHHHHHHHHhhcCCE
Confidence 011122367999999984 321 1368999999999885
Q ss_pred EEEEcCC
Q 004763 231 IVYSTCS 237 (732)
Q Consensus 231 LVYSTCS 237 (732)
++.|||
T Consensus 212 -L~vT~T 217 (525)
T KOG1253|consen 212 -LCVTCT 217 (525)
T ss_pred -EEEEec
Confidence 567888
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.38 E-value=0.035 Score=56.65 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHE 145 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~D 145 (732)
.|.+|||+|||+|--+...+.. +...|++.|+++-....+..|++.+|+ ++.++..|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a----------GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d 135 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA----------GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHAD 135 (218)
T ss_pred ccceeeecccccChHHHHHHHh----------hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeecc
Confidence 4889999999999865544333 246899999999999999999988874 45555444
No 233
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.29 E-value=0.34 Score=53.25 Aligned_cols=134 Identities=8% Similarity=-0.017 Sum_probs=81.0
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE--EecccccCCCCc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV--TNHEAQHFPGCR 153 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~V--t~~Da~~fp~~~ 153 (732)
+.++..|+|++||.|.||..|++.|... ...-.-+++|+|...+..+..++..-..+.+.+ +.+|...-...
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~-----~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~- 147 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQ-----KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW- 147 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhc-----CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh-
Confidence 3567899999999999999999998642 112467999999999999988887334455555 34443221000
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh-hccCCCEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS-LLKVGGRIV 232 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~-lLKpGGrLV 232 (732)
+. ..........|+. |=|.-|-+ -..-...+|++..+ .|+|||.|+
T Consensus 148 l~--------------~~~~~~~~r~~~f--lGSsiGNf-----------------~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 148 LK--------------RPENRSRPTTILW--LGSSIGNF-----------------SRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred cc--------------cccccCCccEEEE--eCccccCC-----------------CHHHHHHHHHHHHHhhCCCCCEEE
Confidence 00 0000122344443 22222321 12334567777777 899999999
Q ss_pred EEcCCCCCcCcHHHHHHHH
Q 004763 233 YSTCSMNPVENEAVVAEIL 251 (732)
Q Consensus 233 YSTCSlnp~ENEaVV~~~L 251 (732)
.. +--.-+.++|.++=
T Consensus 195 iG---~D~~k~~~~l~~AY 210 (319)
T TIGR03439 195 IG---LDGCKDPDKVLRAY 210 (319)
T ss_pred Ee---cCCCCCHHHHHHHh
Confidence 85 34345666654433
No 234
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.071 Score=55.92 Aligned_cols=38 Identities=26% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHH
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN 125 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~ 125 (732)
+|..|||++|.+||+|-.+++. +..+|+|+|+...-++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~----------gAk~VyavDVG~~Ql~ 116 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR----------GAKHVYAVDVGYGQLH 116 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc----------CCcEEEEEEccCCccC
Confidence 5889999999999999998774 3579999999765443
No 235
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.12 E-value=0.079 Score=57.74 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC------CCceEEEecccccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC------TANLIVTNHEAQHF 149 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg------~~ni~Vt~~Da~~f 149 (732)
.++++.||||+||-||-..-.-.+ .-|.+|++|+..--++-++.+.+.+. +-...+..+|-..-
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA----------gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA----------GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred hccccccceeccCCcccHhHhhhh----------cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 368999999999999975554322 24789999997666555555443321 11133344443220
Q ss_pred CCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004763 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (732)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (732)
. +.. . ......+||+|=|--.| ...|. -...-...|+++.++|||||
T Consensus 185 -~--l~d---------~---~e~~dp~fDivScQF~~------------HYaFe------tee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 185 -R--LMD---------L---LEFKDPRFDIVSCQFAF------------HYAFE------TEESARIALRNVAKCLKPGG 231 (389)
T ss_pred -H--HHH---------h---ccCCCCCcceeeeeeeE------------eeeec------cHHHHHHHHHHHHhhcCCCc
Confidence 0 000 0 00112348888662210 00111 11233567899999999999
Q ss_pred EEEEEcCCCCCcCcHHHHHHHHHHC
Q 004763 230 RIVYSTCSMNPVENEAVVAEILRKC 254 (732)
Q Consensus 230 rLVYSTCSlnp~ENEaVV~~~L~~~ 254 (732)
.++-++ -|-.||-.-|+..
T Consensus 232 ~FIgTi------Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 232 VFIGTI------PDSDVIIKRLRAG 250 (389)
T ss_pred EEEEec------CcHHHHHHHHHhc
Confidence 998643 5677887777754
No 236
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.12 E-value=0.055 Score=56.85 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=69.1
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
.||.++||-|+...-|++.-. .+.-.|+|+|-++..+.+++.+....- .++....+|... |.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~-------n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~-~~~-------- 136 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSP-------NNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS-PSL-------- 136 (264)
T ss_pred hheeeccCCCcccchhhhcCC-------CCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc-hhc--------
Confidence 899999999999988876522 235799999999999999988765433 223333334332 110
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
......+.+|.|.+=--=| .-.|+ -+.+.+.+..++|||||.|++.
T Consensus 137 --------~~~~~~~svD~it~IFvLS-----Ai~pe---------------k~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 137 --------KEPPEEGSVDIITLIFVLS-----AIHPE---------------KMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred --------cCCCCcCccceEEEEEEEe-----ccChH---------------HHHHHHHHHHHHhCCCcEEEEe
Confidence 0122346677665400000 00122 2345788889999999999975
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.07 E-value=0.018 Score=51.98 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=40.4
Q ss_pred EeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccCCCCCCC
Q 004763 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSA 161 (732)
Q Consensus 83 LDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~~~~~~~ 161 (732)
|.++++.|.-|..+++.+... ..+.++++|..+. .......+++.+. .++.++.++...+-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~------~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~---------- 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN------GRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLP---------- 63 (106)
T ss_dssp --------------------------------EEEESS-------------GGG-BTEEEEES-THHHHH----------
T ss_pred Ccccccccccccccccccccc------ccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHH----------
Confidence 467888999999999987642 1258999999985 2222333344443 368888777654210
Q ss_pred CccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
......||.|++|..=+. ....+-+..++..|+|||.||+
T Consensus 64 ---------~~~~~~~dli~iDg~H~~-----------------------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 64 ---------SLPDGPIDLIFIDGDHSY-----------------------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ---------HHHH--EEEEEEES---H-----------------------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred ---------HcCCCCEEEEEECCCCCH-----------------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 111368999999975111 2234567889999999999986
No 238
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.81 E-value=0.12 Score=53.21 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.2
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k 132 (732)
.+++.+++..+|++||-|.-.+|+|-..+ -...+++|+.+.++.....+.+
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~---------~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG---------CKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH-----------SEEEEEE-SHHHHHHHHHHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcC---------CcEEEEEEechHHHHHHHHHHH
Confidence 35788999999999999999888876543 3579999999998887766544
No 239
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.46 E-value=0.24 Score=51.06 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=80.3
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE-EEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~-Vt~~Da~~fp~~~~~~~ 157 (732)
+.+||.++||+|-.+.+.|..+. .-.-.--|.+......+..-+...+.+|+. ....|+..-+-
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP---------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w------ 90 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALP---------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW------ 90 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCC---------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC------
Confidence 33799999999999999999874 345566789999888888888777777642 11222222100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE-EEcC
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV-YSTC 236 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV-YSTC 236 (732)
.+..+.......||.|+| .. ++. ..-| ..-..++..|.++|++||.|+ |=.-
T Consensus 91 -------~~~~~~~~~~~~~D~i~~----~N--~lH-----I~p~---------~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 91 -------PWELPAPLSPESFDAIFC----IN--MLH-----ISPW---------SAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred -------ccccccccCCCCcceeee----hh--HHH-----hcCH---------HHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 000001112468999997 10 000 0011 223568889999999999876 5544
Q ss_pred CCC----CcCcHHHHHHHHHHC
Q 004763 237 SMN----PVENEAVVAEILRKC 254 (732)
Q Consensus 237 Sln----p~ENEaVV~~~L~~~ 254 (732)
..+ ++-|+ --.+.|+..
T Consensus 144 ~~~G~~ts~SN~-~FD~sLr~r 164 (204)
T PF06080_consen 144 NRDGKFTSESNA-AFDASLRSR 164 (204)
T ss_pred ccCCEeCCcHHH-HHHHHHhcC
Confidence 432 34444 346666653
No 240
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.37 E-value=0.15 Score=56.36 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=66.7
Q ss_pred cCCCCCCEEEeecCC-CChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCC
Q 004763 74 LDVQPDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (732)
Q Consensus 74 Ld~~pg~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~ 152 (732)
.+++||++|+=.++| -|..+.|+|..++ ..|+|+|++.+..+.+ +++|...++... |...+..+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g----------a~Via~~~~~~K~e~a----~~lGAd~~i~~~-~~~~~~~~ 226 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG----------AEVIAITRSEEKLELA----KKLGADHVINSS-DSDALEAV 226 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC----------CeEEEEeCChHHHHHH----HHhCCcEEEEcC-CchhhHHh
Confidence 368999999998887 3345677777653 6899999999998765 457766544333 33322111
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
...||.||.=+| . .-+..++++|++||++|
T Consensus 227 ---------------------~~~~d~ii~tv~----~-------------------------~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 227 ---------------------KEIADAIIDTVG----P-------------------------ATLEPSLKALRRGGTLV 256 (339)
T ss_pred ---------------------HhhCcEEEECCC----h-------------------------hhHHHHHHHHhcCCEEE
Confidence 123999997433 1 23567889999999998
Q ss_pred EEcCCCC
Q 004763 233 YSTCSMN 239 (732)
Q Consensus 233 YSTCSln 239 (732)
-. .+.
T Consensus 257 ~v--G~~ 261 (339)
T COG1064 257 LV--GLP 261 (339)
T ss_pred EE--CCC
Confidence 64 444
No 241
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.19 E-value=0.1 Score=54.87 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=55.7
Q ss_pred chhhhcCCCCCC--EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---------C
Q 004763 69 VPPLFLDVQPDH--FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---------A 137 (732)
Q Consensus 69 lp~llLd~~pg~--~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~---------~ 137 (732)
..+.+.++++|. +|||..||-|+=++.++.. .+.|+++|.++--..++..-++|... .
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-----------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ 132 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-----------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMR 132 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-----------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-----------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHh
Confidence 334556777775 9999999999999998853 36899999999999999887776421 2
Q ss_pred ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCC
Q 004763 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 185 (732)
Q Consensus 138 ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvP 185 (732)
++.+.+.|+..|.. .....||+|-+||-
T Consensus 133 ri~l~~~d~~~~L~--------------------~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 133 RIQLIHGDALEYLR--------------------QPDNSFDVVYFDPM 160 (234)
T ss_dssp HEEEEES-CCCHCC--------------------CHSS--SEEEE--S
T ss_pred CCEEEcCCHHHHHh--------------------hcCCCCCEEEECCC
Confidence 58888888877643 11368999999983
No 242
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.91 E-value=0.38 Score=49.25 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=61.6
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH--------------HHc-----C-C-
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT--------------KRM-----C-T- 136 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~--------------kRl-----g-~- 136 (732)
+.-+||.++|++|-=+--||-++.........-.-.|+|.|+|...+..+++-. ++. + .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 446999999999965444444443200000011469999999999887764421 110 0 0
Q ss_pred -------CceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc
Q 004763 137 -------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG 209 (732)
Q Consensus 137 -------~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~ 209 (732)
.++.+..+|... .......||.|+| +|-=+ .-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~---------------------~~~~~~~fD~I~C-----------RNVlI---------YF 149 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD---------------------PDPPFGRFDLIFC-----------RNVLI---------YF 149 (196)
T ss_dssp TE-HHHHTTEEEEE--TT----------------------S------EEEEEE------------SSGG---------GS
T ss_pred eEChHHcCceEEEecccCC---------------------CCcccCCccEEEe-----------cCEEE---------Ee
Confidence 012222222211 0122478999998 22111 11
Q ss_pred hHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 210 LHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 210 L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
-...|.+++.+..+.|+|||.|+...
T Consensus 150 ~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 150 DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 23678999999999999999999763
No 243
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.88 E-value=0.24 Score=52.80 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=53.2
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~ 160 (732)
+|+|+|||-|+.+.-+-++ + --.|.|+|+++..+....+|.. .+...|...+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g---------~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~--------- 55 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G---------FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDP--------- 55 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T---------EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHH---------
T ss_pred cEEEEccCccHHHHHHHhc-C---------cEEEEEeecCHHHHHhhhhccc-------cccccccccccc---------
Confidence 7999999999998877543 1 2489999999999999988865 455667665321
Q ss_pred CCccccccccccccccccEEEecCCCCCCCcccc
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (732)
..... .+|.|+.=+||.+--...+
T Consensus 56 ---------~~l~~-~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 56 ---------SDLPK-DVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp ---------HHHHH-T-SEEEEE---TTTSTTST
T ss_pred ---------ccccc-cceEEEeccCCceEecccc
Confidence 11111 5999999999999766553
No 244
>PRK00536 speE spermidine synthase; Provisional
Probab=93.75 E-value=0.63 Score=49.78 Aligned_cols=121 Identities=13% Similarity=0.053 Sum_probs=76.7
Q ss_pred hhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecc
Q 004763 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHE 145 (732)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl----g~~ni~Vt~~D 145 (732)
|+++.-+.| .+||=++.|-|+-.-.++.. + ..|+-+|+|.+-++++++-+..+ .-+++.+...
T Consensus 65 ppl~~h~~p-k~VLIiGGGDGg~~REvLkh----------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~- 131 (262)
T PRK00536 65 MGGCTKKEL-KEVLIVDGFDLELAHQLFKY----------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ- 131 (262)
T ss_pred HHHhhCCCC-CeEEEEcCCchHHHHHHHCc----------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence 445555544 79999999999987776553 2 39999999999999988854332 2345555431
Q ss_pred cccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004763 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (732)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lL 225 (732)
+. ......||+|++|.. ++ ....+.+.+.|
T Consensus 132 ---~~--------------------~~~~~~fDVIIvDs~----------~~-----------------~~fy~~~~~~L 161 (262)
T PRK00536 132 ---LL--------------------DLDIKKYDLIICLQE----------PD-----------------IHKIDGLKRML 161 (262)
T ss_pred ---hh--------------------hccCCcCCEEEEcCC----------CC-----------------hHHHHHHHHhc
Confidence 10 011257999999942 00 12234556789
Q ss_pred cCCCEEEEEcCCCCCcCcHHHHHHHHHHCC
Q 004763 226 KVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 226 KpGGrLVYSTCSlnp~ENEaVV~~~L~~~~ 255 (732)
++||.+|.=+-|... ...++..+.+...
T Consensus 162 ~~~Gi~v~Qs~sp~~--~~~~~~~i~~~l~ 189 (262)
T PRK00536 162 KEDGVFISVAKHPLL--EHVSMQNALKNMG 189 (262)
T ss_pred CCCcEEEECCCCccc--CHHHHHHHHHHHH
Confidence 999999874444332 3555566665543
No 245
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.63 E-value=0.1 Score=54.60 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=80.6
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
+..+=.++||++||+|-..-.|-.+. .++.++|+|..++..+.+. |.-. ..+..++..|..
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a-----------~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~--- 182 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA-----------DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLE--- 182 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH-----------hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhh---
Confidence 44556899999999998777765553 4788999999998766542 1110 112334444421
Q ss_pred CCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~-DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
......||.|.. || .....---.++--+..+|++||.+.|
T Consensus 183 ----------------~~~~er~DLi~AaDV-----------------------l~YlG~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 183 ----------------DLTQERFDLIVAADV-----------------------LPYLGALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred ----------------hccCCcccchhhhhH-----------------------HHhhcchhhHHHHHHHhcCCCceEEE
Confidence 122378999874 22 11112223567788899999999999
Q ss_pred EcCCCCCcC------------cHHHHHHHHHHCCCcEEEEec
Q 004763 234 STCSMNPVE------------NEAVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 234 STCSlnp~E------------NEaVV~~~L~~~~~~velvd~ 263 (732)
|.=++.-.- .|.-|...|..+| ++++.+
T Consensus 224 SvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~G--l~~i~~ 263 (287)
T COG4976 224 SVETLPDDGGFVLGPSQRYAHSESYVRALLAASG--LEVIAI 263 (287)
T ss_pred EecccCCCCCeecchhhhhccchHHHHHHHHhcC--ceEEEe
Confidence 987764332 2455666666655 445554
No 246
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.60 E-value=0.27 Score=47.16 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=47.3
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
...+...|+|+|||-|..+..|+..+.+. .+.-.|+++|.++.....+....++++
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~-----~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNS-----SPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhc-----CCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 44778899999999999999999977542 135799999999999999988888776
No 247
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=93.56 E-value=0.31 Score=52.79 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=33.2
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n 130 (732)
-+||..+|++|-=.=-||-++..... .....-.|+|.|+|...+..+++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~-~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLG-TAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhc-ccCCCcEEEEEECCHHHHHHHHhC
Confidence 59999999999655444444432100 001135799999999999877664
No 248
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.42 E-value=0.038 Score=61.95 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=55.1
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEecccccCC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHFP 150 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~--~ni~Vt~~Da~~fp 150 (732)
.+||+.|-|+|||-|-.++-++.. ..+|+|||.++..++.|..|++...+ .++.+.|+||..|-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-----------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-----------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-----------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 378999999999999998887654 47999999999999999999976554 35999999999875
No 249
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=93.35 E-value=0.42 Score=52.40 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=77.4
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~~ 156 (732)
.+..|||++||+|-.+..++++ +...|+|++.+. +.+.++..++.+++ ..|.|+-+....+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA----------GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi------- 238 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA----------GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI------- 238 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh----------CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc-------
Confidence 4679999999999998887765 357999999864 33334444444443 3455655433321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
.-.++.|.|+..| .|+|--|..+ ++--.+|-++|||.|.+. -|-
T Consensus 239 ---------------eLPEk~DviISEP----MG~mL~NERM----------------LEsYl~Ark~l~P~GkMf-PT~ 282 (517)
T KOG1500|consen 239 ---------------ELPEKVDVIISEP----MGYMLVNERM----------------LESYLHARKWLKPNGKMF-PTV 282 (517)
T ss_pred ---------------cCchhccEEEecc----chhhhhhHHH----------------HHHHHHHHhhcCCCCccc-Ccc
Confidence 1137899999865 4766444322 222335668999999875 333
Q ss_pred C---CCCcCcHHHHHHHHHH
Q 004763 237 S---MNPVENEAVVAEILRK 253 (732)
Q Consensus 237 S---lnp~ENEaVV~~~L~~ 253 (732)
+ +.|--+|..-.+-..+
T Consensus 283 gdiHlAPFsDE~Ly~E~~nk 302 (517)
T KOG1500|consen 283 GDIHLAPFSDEQLYVEQFNK 302 (517)
T ss_pred cceeecccchHHHHHHHHhh
Confidence 3 6688888776555544
No 250
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=93.32 E-value=0.033 Score=57.55 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=69.1
Q ss_pred ccccchhh------hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 65 AVSMVPPL------FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 65 ~~Smlp~l------lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
+++-+|++ .|.+.+|...+||.-|.|+.|..|++.- +...++|.|.|+-..+++.+....+--+.
T Consensus 24 ~~~HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~---------se~k~yalDrDP~A~~La~~~s~el~~~~ 94 (303)
T KOG2782|consen 24 PSSHVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKH---------SELKNYALDRDPVARKLAHFHSDELMHPT 94 (303)
T ss_pred cccCCceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhC---------cHhhhhhhccChHHHHHHHHhhHhhcchh
Confidence 35555554 4678999999999999999999998863 35789999999988887777664332222
Q ss_pred eEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004763 139 LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (732)
Q Consensus 139 i~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (732)
+....+....++.+.. +.......||-||.|--||+.-
T Consensus 95 l~a~Lg~Fs~~~~l~~--------------~~gl~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 95 LKAVLGNFSYIKSLIA--------------DTGLLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred HHHHHhhhHHHHHHHH--------------HhCCCcCCcceEEeecCccccc
Confidence 2222222222222110 1123347899999999999854
No 251
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.23 E-value=0.051 Score=58.58 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCEEEeecCCCChHHH-HHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccc
Q 004763 78 PDHFVLDMCAAPGSKTF-QLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEA 146 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~-qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da 146 (732)
.|..|.||.||-|.+|+ -+..+ ....|+|+|.++..++.|+++++.++.. ...++.+|-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a----------gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~ 254 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA----------GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN 254 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc----------CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc
Confidence 36899999999999998 44332 2579999999999999999999887754 244444443
No 252
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.19 E-value=1.1 Score=53.80 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=81.7
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcC--CCC-CCCCCeEEEEEeCCHHHHHHHHHHHH----------Hc---------
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQS--TNP-GALPNGMVIANDLDVQRCNLLIHQTK----------RM--------- 134 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~--~~~-~~~p~G~VvAnDid~~Rl~~L~~n~k----------Rl--------- 134 (732)
++.-+|||+|=|.|--++.+.+..... .++ .....=.++++|.++-....|.+-.+ .+
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345799999999999888887766310 001 00113478999986532222222111 11
Q ss_pred CCC---------ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc
Q 004763 135 CTA---------NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG 205 (732)
Q Consensus 135 g~~---------ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~ 205 (732)
|.. ++.+..+|+...- ..-...||.|++|+= .-.|||++|..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~--------------------~~~~~~~d~~~lD~F-----sP~~np~~W~~---- 186 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELL--------------------PQLDARADAWFLDGF-----APAKNPDMWSP---- 186 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHH--------------------HhccccccEEEeCCC-----CCccChhhccH----
Confidence 111 1122233443210 000145999999951 12689999875
Q ss_pred cccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEE
Q 004763 206 LGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVE 259 (732)
Q Consensus 206 ~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~ve 259 (732)
.++....+++++||+++--|| -..|...|...|-.++
T Consensus 187 ----------~~~~~l~~~~~~~~~~~t~t~-------a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 187 ----------NLFNALARLARPGATLATFTS-------AGFVRRGLQEAGFTVR 223 (662)
T ss_pred ----------HHHHHHHHHhCCCCEEEEeeh-------HHHHHHHHHHcCCeee
Confidence 578888899999999984443 3578888988875443
No 253
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.89 E-value=1.3 Score=44.09 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=44.5
Q ss_pred ccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCc
Q 004763 173 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV 241 (732)
Q Consensus 173 ~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ 241 (732)
....||+|+-+-|+.|.|.-. ...+......+-...+..|.++|+++|.|..+-|.-.|-
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~---------~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSED---------GKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccc---------hhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 347899999999999955311 111222233566778999999999999999999998774
No 254
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.59 E-value=0.89 Score=44.30 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=63.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004763 113 MVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (732)
Q Consensus 113 ~VvAnDid~~Rl~~L~~n~kRlg~~-ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (732)
+|+|+|+..+.+...+.+++..+.. ++.+.+..-.++... .....+|.|+-+- |-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~-------------------i~~~~v~~~iFNL-----GY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY-------------------IPEGPVDAAIFNL-----GY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---------------------S--EEEEEEEE-----SB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh-------------------CccCCcCEEEEEC-----Cc
Confidence 5899999999999999999998875 466665443343221 0114688887642 32
Q ss_pred cccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCC---cCcHHHHHHHHHHC
Q 004763 192 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP---VENEAVVAEILRKC 254 (732)
Q Consensus 192 lrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp---~ENEaVV~~~L~~~ 254 (732)
+... ..........-...|..|+++|++||+|+...-.=++ +|-++ |.++++..
T Consensus 57 LPgg--------Dk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~a-v~~~~~~L 113 (140)
T PF06962_consen 57 LPGG--------DKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEA-VEEFLASL 113 (140)
T ss_dssp -CTS---------TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHH-HHHHHHTS
T ss_pred CCCC--------CCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHH-HHHHHHhC
Confidence 2110 0111222344567799999999999999987666666 34444 46666654
No 255
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.39 E-value=1.1 Score=48.47 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=61.2
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH-HcCC-CceEEEecccccCCCCccCCC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK-RMCT-ANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k-Rlg~-~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
.+|+=+++||=-.|+.++...+. +...|+.+|+|+.+..+.++-++ .+|. ..+.+..+|+...+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~-------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~------- 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG-------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT------- 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT-------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--------
T ss_pred ceEEEEcCCCcchHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-------
Confidence 49999999999998887765443 24679999999999999988777 4553 45777777765422
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
.....||.|++-+- -|+ .+ .--.+||.+..+.+++|.+|+|
T Consensus 188 --------------~dl~~~DvV~lAal---Vg~-~~-----------------e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 188 --------------YDLKEYDVVFLAAL---VGM-DA-----------------EPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp --------------GG----SEEEE-TT----S----------------------SHHHHHHHHHHHS-TTSEEEE
T ss_pred --------------cccccCCEEEEhhh---ccc-cc-----------------chHHHHHHHHHhhCCCCcEEEE
Confidence 11257999997321 010 00 0124788888999999998887
No 256
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=91.68 E-value=0.4 Score=49.89 Aligned_cols=104 Identities=20% Similarity=0.040 Sum_probs=64.1
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
.-.+.||.+||-|-.|-+++--+ --.|-.+|..++-+..+++.+...+..-..+.+.-.+.|-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~----------f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV----------FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-----------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------
T ss_pred CcceEEecccccchhHHHHHHHh----------cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-------
Confidence 46799999999999998874332 2489999999999988876432211122334444444431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~-~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
....+||.|.+ .|.... |. ..-.+.|+|+.+.|+|||.||.
T Consensus 118 --------------P~~~~YDlIW~------------------QW~lgh---LTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 118 --------------PEEGKYDLIWI------------------QWCLGH---LTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ----------------TT-EEEEEE------------------ES-GGG---S-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------------CCCCcEeEEEe------------------hHhhcc---CCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 12368999976 665433 22 2336789999999999999985
No 257
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.66 E-value=0.57 Score=51.36 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=70.7
Q ss_pred cCCCCCCEEEeecCCCChH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc--ccCC
Q 004763 74 LDVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA--QHFP 150 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da--~~fp 150 (732)
.++++|++||=|+|||=+. |...|.+++ ...|+..|+++.|++++++ +|...+....+.. ..+-
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G---------A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~ 231 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG---------ASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELA 231 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC---------CCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHH
Confidence 4689999999999999666 444555554 4799999999999987654 7876554443322 1100
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
.. + ........||..+- |||... -++.|+..++.||+
T Consensus 232 ~~-v--------------~~~~g~~~~d~~~d---CsG~~~-------------------------~~~aai~a~r~gGt 268 (354)
T KOG0024|consen 232 EL-V--------------EKALGKKQPDVTFD---CSGAEV-------------------------TIRAAIKATRSGGT 268 (354)
T ss_pred HH-H--------------HhhccccCCCeEEE---ccCchH-------------------------HHHHHHHHhccCCE
Confidence 00 0 00111134888874 888653 35667889999999
Q ss_pred EEEEcCC
Q 004763 231 IVYSTCS 237 (732)
Q Consensus 231 LVYSTCS 237 (732)
+|..-|-
T Consensus 269 ~vlvg~g 275 (354)
T KOG0024|consen 269 VVLVGMG 275 (354)
T ss_pred EEEeccC
Confidence 8876543
No 258
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=91.18 E-value=1.2 Score=48.48 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=84.5
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCC-ceEEEeccc--ccCCCCcc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTA-NLIVTNHEA--QHFPGCRA 154 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl-g~~-ni~Vt~~Da--~~fp~~~~ 154 (732)
.-++||+++|.-..-..|+..+. .-.+||.|+|+.-+..+++|++++ ++. .|.+..... .-|..+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~---------~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~- 172 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY---------GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII- 172 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-----------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST-
T ss_pred ceEeecCCccHHHHHHHHhhhhc---------CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh-
Confidence 45899999999887666666654 368999999999999999999998 664 465653322 2232221
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCC------ccccChhhhh----hccc-----cccc------chHHH
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG------TLRKAPDIWR----KWNV-----GLGN------GLHSL 213 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG------tlrk~pd~w~----~ws~-----~~~~------~L~~l 213 (732)
.....||..+|+||--.+. +-||.-++-+ ...+ +... +=..+
T Consensus 173 -----------------~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~F 235 (299)
T PF05971_consen 173 -----------------QPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAF 235 (299)
T ss_dssp -----------------T--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHH
T ss_pred -----------------cccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHH
Confidence 1225899999999965442 2222100000 0000 0111 12346
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCC-cEEEEec
Q 004763 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDV 263 (732)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~-~velvd~ 263 (732)
-.+++.....+-. ....| ||=+...+|-.-+...|++.+. .+..++.
T Consensus 236 V~rMI~ES~~~~~--~v~Wf-TsmvgKkssL~~l~~~L~~~~~~~~~~~e~ 283 (299)
T PF05971_consen 236 VKRMIKESLQLKD--QVRWF-TSMVGKKSSLKPLKKELKKLGATNYKVTEM 283 (299)
T ss_dssp HHHHHHHHHHHGG--GEEEE-EEEESSGGGHHHHHHHHHHTT-SEEEEEEE
T ss_pred HHHHHHHHHHhCC--CcEEE-eecccCcccHHHHHHHHHhcCCceEEEEEc
Confidence 6778888876532 34445 5778899999999999998763 2444443
No 259
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.12 E-value=2.5 Score=43.51 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=34.5
Q ss_pred hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeC
Q 004763 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119 (732)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi 119 (732)
.+.+++||+.|+|+--|.|.+|..++-.++ |+|.|+++=-
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vg--------p~G~Vy~~~p 81 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVG--------PKGKVYAYVP 81 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcC--------CceeEEEecc
Confidence 345899999999999999999999998876 5899988744
No 260
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.90 E-value=1.8 Score=48.20 Aligned_cols=81 Identities=26% Similarity=0.351 Sum_probs=60.6
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCC-CeEEEEEeCCHHHHHHHHHHH--HHcC-----CCceEEEeccc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALP-NGMVIANDLDVQRCNLLIHQT--KRMC-----TANLIVTNHEA 146 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p-~G~VvAnDid~~Rl~~L~~n~--kRlg-----~~ni~Vt~~Da 146 (732)
.++.-.+||=++-|-|--.-+|... | -+.|+-+|.|++.++...|+. ...+ -+++.|++.||
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellky----------P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA 355 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKY----------PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA 355 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhC----------CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH
Confidence 4566789999998888665555443 4 689999999999999999775 2222 25688999999
Q ss_pred ccCCCCccCCCCCCCCccccccccccccccccEEEecCC
Q 004763 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 185 (732)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvP 185 (732)
.+|..- ...+||.|++|-|
T Consensus 356 f~wlr~--------------------a~~~fD~vIVDl~ 374 (508)
T COG4262 356 FQWLRT--------------------AADMFDVVIVDLP 374 (508)
T ss_pred HHHHHh--------------------hcccccEEEEeCC
Confidence 876431 1258999999987
No 261
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=90.88 E-value=4 Score=35.48 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=64.5
Q ss_pred EEeecCCCChHHHHHHHHHhcCCCCCCCCC-eEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc--CCCCccCCCC
Q 004763 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPN-GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH--FPGCRANKNF 158 (732)
Q Consensus 82 VLDmCAAPGsKT~qLae~l~~~~~~~~~p~-G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~--fp~~~~~~~~ 158 (732)
|||++||+|..+ .++.... . ..++++|.+...+..........+...+.+...+... ++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 114 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG---------RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPF------- 114 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC---------CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCC-------
Confidence 999999999977 3333311 2 3788899999988884444333111113444444333 111
Q ss_pred CCCCcccccccccccc-ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 159 SSASDKGIESESNMGQ-LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
.. ..||.+..... + .|.. ....+....+.+++||.++++...
T Consensus 115 --------------~~~~~~d~~~~~~~-------------~-~~~~---------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 115 --------------EDSASFDLVISLLV-------------L-HLLP---------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred --------------CCCCceeEEeeeee-------------h-hcCC---------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 11 36888832111 0 0000 456788888999999999998887
Q ss_pred CCCcCc
Q 004763 238 MNPVEN 243 (732)
Q Consensus 238 lnp~EN 243 (732)
......
T Consensus 158 ~~~~~~ 163 (257)
T COG0500 158 RDGLLE 163 (257)
T ss_pred CCCCcc
Confidence 655443
No 262
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.68 E-value=0.84 Score=48.73 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEcC---C---CC------CcCcHHHHHHHHHHCCCcEEEEec
Q 004763 211 HSLQVQIAMRGISLLKVGGRIVYSTC---S---MN------PVENEAVVAEILRKCEGSVELVDV 263 (732)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGGrLVYSTC---S---ln------p~ENEaVV~~~L~~~~~~velvd~ 263 (732)
+....+.|++..++|||||.||.... | +- --=||+.|.++|++.| +.+++.
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG--~~i~~~ 237 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG--FDIEDL 237 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC--CEEEec
Confidence 34567889999999999999996532 1 00 1237899999999886 455554
No 263
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=90.67 E-value=1.1 Score=46.64 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=66.8
Q ss_pred ccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEec
Q 004763 65 AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 144 (732)
Q Consensus 65 ~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~ 144 (732)
++-.+.-.+....++..|-||+||-+- ||..+.+ .-.|...|.-. .|-.||.+
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~----la~~~~~--------~~~V~SfDLva---------------~n~~Vtac 111 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAK----LAKAVPN--------KHKVHSFDLVA---------------PNPRVTAC 111 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-H----HHHH--S-----------EEEEESS----------------SSTTEEES
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHH----HHHhccc--------CceEEEeeccC---------------CCCCEEEe
Confidence 344444444444556899999999865 4455432 24799999722 22236667
Q ss_pred ccccCCCCccCCCCCCCCccccccccccccccccEEEecCCC-CCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004763 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC-SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (732)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC-SGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~ 223 (732)
|..+.|- ....+|.+++ | |=.|| .| ...|+.|.+
T Consensus 112 dia~vPL---------------------~~~svDv~Vf---cLSLMGT---------n~------------~~fi~EA~R 146 (219)
T PF05148_consen 112 DIANVPL---------------------EDESVDVAVF---CLSLMGT---------NW------------PDFIREANR 146 (219)
T ss_dssp -TTS-S-----------------------TT-EEEEEE---ES---SS----------H------------HHHHHHHHH
T ss_pred cCccCcC---------------------CCCceeEEEE---EhhhhCC---------Cc------------HHHHHHHHh
Confidence 7766552 2367898876 3 33454 12 457999999
Q ss_pred hccCCCEEEEE-cCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004763 224 LLKVGGRIVYS-TCSMNPVENEAVVAEILRKCEGSVELVD 262 (732)
Q Consensus 224 lLKpGGrLVYS-TCSlnp~ENEaVV~~~L~~~~~~velvd 262 (732)
.||+||.|... .+| ..+|-..-...+++.|-.+.--|
T Consensus 147 vLK~~G~L~IAEV~S--Rf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 147 VLKPGGILKIAEVKS--RFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HEEEEEEEEEEEEGG--G-S-HHHHHHHHHCTTEEEEEEE
T ss_pred eeccCcEEEEEEecc--cCcCHHHHHHHHHHCCCeEEecc
Confidence 99999998765 344 23566666677777763333333
No 264
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.06 E-value=0.48 Score=51.77 Aligned_cols=77 Identities=18% Similarity=0.152 Sum_probs=52.4
Q ss_pred EEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCC
Q 004763 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSA 161 (732)
Q Consensus 82 VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~ 161 (732)
|+|+|||-|+.+.-+-++ +--.|.|+|+++..+.+..+|.. + .+...|...+..
T Consensus 1 vidLF~G~GG~~~Gl~~a----------G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~---------- 54 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA----------GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISP---------- 54 (315)
T ss_pred CEEEecCccHHHHHHHHc----------CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhh----------
Confidence 689999999998777443 12467899999999999888642 2 223344443211
Q ss_pred CccccccccccccccccEEEecCCCCCCCcccc
Q 004763 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (732)
.....+|.++.-+||.+.=...+
T Consensus 55 ----------~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 55 ----------SDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred ----------hhCCCcCEEEecCCCcccchhcc
Confidence 00135899999999998655433
No 265
>PRK04148 hypothetical protein; Provisional
Probab=89.48 E-value=0.72 Score=44.59 Aligned_cols=53 Identities=11% Similarity=-0.043 Sum_probs=36.4
Q ss_pred CCCEEEeecCCCCh-HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 78 PDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 78 pg~~VLDmCAAPGs-KT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.+.+|||+++|.|. .+..|+++ ...|+|+|+++.+++.++++ + +.+...|..+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-----------G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~ 69 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-----------GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFN 69 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCC
Confidence 46789999999997 44444432 35899999999987765443 3 3455555543
No 266
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.20 E-value=0.52 Score=48.69 Aligned_cols=133 Identities=16% Similarity=0.145 Sum_probs=63.6
Q ss_pred CcEEEccccccchh--hhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 58 GNITRQEAVSMVPP--LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 58 G~i~~Qd~~Smlp~--llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
|....|-+--|+.. ++-.++|. .|+.++.+-||-+...|.++..- .+.|.|+++|++...+.........+
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kPd-~IIE~Gi~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~~~~a~e~hp~- 83 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKPD-LIIETGIAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPHNRKAIESHPM- 83 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH--S-EEEEE--TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT--S-GGGG----
T ss_pred CeehhcCHHHHHHHHHHHHHhCCC-eEEEEecCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchhchHHHhhccc-
Confidence 44444444333332 22255554 89999999999999888877642 24799999999766554322222222
Q ss_pred CCceEEEecccccCCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004763 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (732)
Q Consensus 136 ~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~ 215 (732)
.+.|.+..+|......+. ... ..........|+.|+-=+ +.-..
T Consensus 84 ~~rI~~i~Gds~d~~~~~--~v~-----------~~~~~~~~vlVilDs~H~-----------------------~~hvl 127 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVD--QVR-----------ELASPPHPVLVILDSSHT-----------------------HEHVL 127 (206)
T ss_dssp -TTEEEEES-SSSTHHHH--TSG-----------SS----SSEEEEESS---------------------------SSHH
T ss_pred cCceEEEECCCCCHHHHH--HHH-----------HhhccCCceEEEECCCcc-----------------------HHHHH
Confidence 267888888765421110 000 000112344677775422 22235
Q ss_pred HHHHHHHhhccCCCEEEE
Q 004763 216 QIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 216 ~IL~rAl~lLKpGGrLVY 233 (732)
+.|..-..++++|+++|.
T Consensus 128 ~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 128 AELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp HHHHHHHHT--TT-EEEE
T ss_pred HHHHHhCccCCCCCEEEE
Confidence 567778889999999874
No 267
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.81 E-value=4.2 Score=43.79 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=32.2
Q ss_pred CCEEEeecCCCChH----HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004763 79 DHFVLDMCAAPGSK----TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (732)
Q Consensus 79 g~~VLDmCAAPGsK----T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~ 129 (732)
--+||-++|++|-= +..|.+.++.. ....-.|+|.|+|.+.+..++.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~----~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKL----AGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccc----cCCceEEEEEECCHHHHHHHhc
Confidence 45999999999954 44444444320 0124689999999998887653
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=88.43 E-value=0.8 Score=49.18 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k 132 (732)
.+|+.|||-|+|+|+ |+.+|+.++ -.-+++|++++-+.+++.++.
T Consensus 207 ~~GD~VLDPF~GSGT-T~~AA~~lg----------R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFT-TGAVAKASG----------RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcH-HHHHHHHcC----------CCEEEEeCCHHHHHHHHHHHH
Confidence 689999999999998 444455543 478999999999999888764
No 269
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.35 E-value=2.6 Score=46.63 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=64.0
Q ss_pred CCCCCCEEEeecCCCChH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCc
Q 004763 75 DVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~ 153 (732)
..+++.+|+=++|||=|. +++++..++ ...|++.|.++.|++++++. .+...+ .+........ .
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~G---------a~~Viv~d~~~~Rl~~A~~~---~g~~~~--~~~~~~~~~~-~ 229 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLG---------ASVVIVVDRSPERLELAKEA---GGADVV--VNPSEDDAGA-E 229 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHHHHHHHHHh---CCCeEe--ecCccccHHH-H
Confidence 345666999999999655 455555543 57999999999999977541 332211 1111100000 0
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
+ ........||.|+- |||.. ..+..|++++++||++++
T Consensus 230 ~--------------~~~t~g~g~D~vie---~~G~~-------------------------~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 230 I--------------LELTGGRGADVVIE---AVGSP-------------------------PALDQALEALRPGGTVVV 267 (350)
T ss_pred H--------------HHHhCCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhcCCCEEEE
Confidence 0 00011246999985 77722 157789999999999998
Q ss_pred Ec
Q 004763 234 ST 235 (732)
Q Consensus 234 ST 235 (732)
.-
T Consensus 268 vG 269 (350)
T COG1063 268 VG 269 (350)
T ss_pred Ee
Confidence 63
No 270
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.17 E-value=0.82 Score=42.17 Aligned_cols=88 Identities=27% Similarity=0.388 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCccccccc
Q 004763 90 GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESE 169 (732)
Q Consensus 90 GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~~~ 169 (732)
|..++|+|..++ ..|++.|.+..|..++ +++|...+ .+....++.. .+.
T Consensus 3 G~~a~q~ak~~G----------~~vi~~~~~~~k~~~~----~~~Ga~~~--~~~~~~~~~~-~i~-------------- 51 (130)
T PF00107_consen 3 GLMAIQLAKAMG----------AKVIATDRSEEKLELA----KELGADHV--IDYSDDDFVE-QIR-------------- 51 (130)
T ss_dssp HHHHHHHHHHTT----------SEEEEEESSHHHHHHH----HHTTESEE--EETTTSSHHH-HHH--------------
T ss_pred HHHHHHHHHHcC----------CEEEEEECCHHHHHHH----Hhhccccc--cccccccccc-ccc--------------
Confidence 677888888753 6899999999998765 45774432 3322221110 000
Q ss_pred cccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 170 SNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 170 ~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
.......+|.|+- |+|.+ ..+..++++|++||++|....
T Consensus 52 ~~~~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 52 ELTGGRGVDVVID---CVGSG-------------------------DTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHTTTSSEEEEEE---SSSSH-------------------------HHHHHHHHHEEEEEEEEEESS
T ss_pred cccccccceEEEE---ecCcH-------------------------HHHHHHHHHhccCCEEEEEEc
Confidence 0011147999985 66643 257789999999999987533
No 271
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.93 E-value=1.1 Score=44.95 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=31.0
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
-.+|+.|||-+||+|+ |+.+|..++ -.-+++|+++.-+.+++
T Consensus 189 t~~gdiVlDpF~GSGT-T~~aa~~l~----------R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGT-TAVAAEELG----------RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTH-HHHHHHHTT-----------EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccCh-HHHHHHHcC----------CeEEEEeCCHHHHHHhc
Confidence 4789999999999998 555566653 46899999999988765
No 272
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=86.93 E-value=0.0013 Score=70.69 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=42.1
Q ss_pred EEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcH
Q 004763 180 VLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 244 (732)
Q Consensus 180 VL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENE 244 (732)
||++.+|++.+++|.|+..|..|........+.+|.+.+..+...+..++...|++|++.+.++.
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G 65 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNG 65 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTT
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCC
Confidence 46788999999999999988887655555555555444444444444556666788888766664
No 273
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=86.86 E-value=2.3 Score=44.12 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEecccccC-C
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-------TANLIVTNHEAQHF-P 150 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-------~~ni~Vt~~Da~~f-p 150 (732)
.-.+.|++||=|+....|+.. .|.-.|++.++.-+-+.-.+..+..++ ..|+.|....+..| |
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~---------fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPK---------FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhcccc---------CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence 346889999999998888766 367899999998887777777766554 45666666655543 2
Q ss_pred CCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004763 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (732)
++ +..+....++. +-.+|..|++-.+... .+..++.+-.=+|+.||.
T Consensus 132 n~-------------------f~kgqLskmff---------~fpdpHfk~~khk~ri-----i~~~l~~eyay~l~~gg~ 178 (249)
T KOG3115|consen 132 NF-------------------FEKGQLSKMFF---------LFPDPHFKARKHKWRI-----ITSTLLSEYAYVLREGGI 178 (249)
T ss_pred ch-------------------hhhccccccee---------ecCChhHhhhhcccee-----echhHHHHHHhhhhcCce
Confidence 21 11122222221 1224445544222221 334567777779999999
Q ss_pred EEEEcCC
Q 004763 231 IVYSTCS 237 (732)
Q Consensus 231 LVYSTCS 237 (732)
+.++|=-
T Consensus 179 ~ytitDv 185 (249)
T KOG3115|consen 179 LYTITDV 185 (249)
T ss_pred EEEEeeH
Confidence 8887643
No 274
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.59 E-value=5.9 Score=43.03 Aligned_cols=51 Identities=12% Similarity=-0.071 Sum_probs=33.2
Q ss_pred cCCCCCCEEEeecCCCCh-HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGs-KT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
.++++|++||=.+||+-+ .++|+|..+ ...|++.+.+.+|+.++ +.+|...
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~----------G~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ----------GATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC----------CCeEEEEeCChHHHHHH----HHhCCce
Confidence 467899999988754322 233444432 24699999999997654 5577653
No 275
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.54 E-value=2.1 Score=47.02 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=56.9
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
..+|+|+|||-|+...-+-.+ + --.+.|+|+++..+....+|... ..+...|...+..-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-g---------f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~------ 61 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-G---------FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGE------ 61 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-C---------CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChh------
Confidence 358999999999998665443 1 24899999999999999887542 23344444432110
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccC
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~ 195 (732)
......+|.|+.-+||=+.=...++
T Consensus 62 ------------~~~~~~~DvligGpPCQ~FS~aG~r 86 (328)
T COG0270 62 ------------ALRKSDVDVLIGGPPCQDFSIAGKR 86 (328)
T ss_pred ------------hccccCCCEEEeCCCCcchhhcCcc
Confidence 0111179999999999887665544
No 276
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.15 E-value=6.4 Score=42.79 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=33.7
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
...+|++||=.+| |+....+++++... ....|++.|.+++|+.++. .+|...
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~------G~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTL------GAAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 4568999997764 55554444444321 1237999999999987654 477643
No 277
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.33 E-value=3.4 Score=45.22 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=33.5
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
.++++|++||=.++ |+....++++.... ....|++.|.+.+|...+. ++|..
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 35789999998754 55544443333321 1125999999999988763 46753
No 278
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.88 E-value=1.7 Score=46.45 Aligned_cols=70 Identities=27% Similarity=0.382 Sum_probs=47.9
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
+.||+.-.|++|+|||+|-||... .-+|+|+|--+=+..+ +....+.-...|+..|-.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr-----------~m~V~aVDng~ma~sL-------~dtg~v~h~r~DGfk~~P---- 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR-----------NMRVYAVDNGPMAQSL-------MDTGQVTHLREDGFKFRP---- 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc-----------ceEEEEeccchhhhhh-------hcccceeeeeccCccccc----
Confidence 578999999999999999999764 4689999974433322 222334444455555421
Q ss_pred CCCCCCCccccccccccccccccEEEecC
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDV 184 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv 184 (732)
.....|=.+||.
T Consensus 267 -----------------~r~~idWmVCDm 278 (358)
T COG2933 267 -----------------TRSNIDWMVCDM 278 (358)
T ss_pred -----------------CCCCCceEEeeh
Confidence 236789999986
No 279
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.27 E-value=19 Score=37.81 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=90.1
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCCccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~fp~~~~~ 155 (732)
+.+.+++|+||=-|.....|... .+..++||.|+++.-+..++.|+++.+. ..+.+..+|+ ++.+..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~---------~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~- 82 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN---------NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLEL- 82 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc---------CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCc-
Confidence 44666999999999988887654 2467999999999999999999999875 4577777776 444321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
...+|.|.. .|.|- .+-..||.++.+.|+-=-++|
T Consensus 83 ------------------~d~~d~ivI----AGMGG--------------------~lI~~ILee~~~~l~~~~rlI--- 117 (226)
T COG2384 83 ------------------EDEIDVIVI----AGMGG--------------------TLIREILEEGKEKLKGVERLI--- 117 (226)
T ss_pred ------------------cCCcCEEEE----eCCcH--------------------HHHHHHHHHhhhhhcCcceEE---
Confidence 135888876 45552 345789999999887545666
Q ss_pred CCCCCcCcHHHHHHHHHHCC
Q 004763 236 CSMNPVENEAVVAEILRKCE 255 (732)
Q Consensus 236 CSlnp~ENEaVV~~~L~~~~ 255 (732)
+.|.-++.-..++|..++
T Consensus 118 --LQPn~~~~~LR~~L~~~~ 135 (226)
T COG2384 118 --LQPNIHTYELREWLSANS 135 (226)
T ss_pred --ECCCCCHHHHHHHHHhCC
Confidence 467788888999998765
No 280
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=83.96 E-value=4.6 Score=44.08 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=30.1
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeC---CHHHHHHHHHHHHHcCCC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL---DVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi---d~~Rl~~L~~n~kRlg~~ 137 (732)
+++|++||=.+| |+....+++++... ...|++.+. +++|..++ +++|..
T Consensus 170 ~~~g~~vlI~G~--G~vG~~a~q~ak~~-------G~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGA--GPIGLLAALLLRLR-------GFEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHc-------CCeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 568999998865 55443333333221 236888887 67887755 457754
No 281
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=83.87 E-value=5 Score=43.74 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=31.4
Q ss_pred CCCCCCEEEeecCCCChH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 75 DVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
.+++|++||=.+||+=|. ++|++..+.. ...|++.|.+++|+++++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g--------~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYP--------ESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcC--------CCcEEEEeCcHhHHHHHh
Confidence 468899999888654332 3455543221 347999999999988764
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=83.57 E-value=1.6 Score=50.51 Aligned_cols=102 Identities=24% Similarity=0.231 Sum_probs=58.9
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEE---EEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVI---ANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~Vv---AnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
-.+||++||.|++++.|++. .-.++ .+|..+.-.+.+ ..-|++.+.-+- -.+.+|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----------~V~t~s~a~~d~~~~qvqfa----leRGvpa~~~~~-~s~rLP------ 176 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----------NVTTMSFAPNDEHEAQVQFA----LERGVPAMIGVL-GSQRLP------ 176 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----------CceEEEcccccCCchhhhhh----hhcCcchhhhhh-cccccc------
Confidence 37899999999999998764 11222 223333333222 223444322111 112222
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
.....||.|=| |.-.. .|.+..+ -+|...-++|+|||.+|+|.-
T Consensus 177 ---------------fp~~~fDmvHc----src~i---------~W~~~~g--------~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 177 ---------------FPSNAFDMVHC----SRCLI---------PWHPNDG--------FLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ---------------CCccchhhhhc----ccccc---------cchhccc--------ceeehhhhhhccCceEEecCC
Confidence 22367888864 44332 3555553 256677789999999999977
Q ss_pred CCC
Q 004763 237 SMN 239 (732)
Q Consensus 237 Sln 239 (732)
-++
T Consensus 221 pv~ 223 (506)
T PF03141_consen 221 PVY 223 (506)
T ss_pred ccc
Confidence 776
No 283
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=83.20 E-value=1.7 Score=41.32 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=42.2
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHC
Q 004763 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (732)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~ 254 (732)
..||.|.+|+- .-++||++|.. .++.+..+++++||+++--||+ ..|...|...
T Consensus 49 ~~~Da~ylDgF-----sP~~nPelWs~--------------e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a 102 (124)
T PF05430_consen 49 ARFDAWYLDGF-----SPAKNPELWSE--------------ELFKKLARLSKPGGTLATYSSA-------GAVRRALQQA 102 (124)
T ss_dssp T-EEEEEE-SS------TTTSGGGSSH--------------HHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHC
T ss_pred ccCCEEEecCC-----CCcCCcccCCH--------------HHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHc
Confidence 68999999962 23689999874 6888899999999988744443 4589999998
Q ss_pred CCcE
Q 004763 255 EGSV 258 (732)
Q Consensus 255 ~~~v 258 (732)
|-.|
T Consensus 103 GF~v 106 (124)
T PF05430_consen 103 GFEV 106 (124)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 7444
No 284
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.11 E-value=2.9 Score=41.69 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=40.3
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHH
Q 004763 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 174 ~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~ 253 (732)
...||+|++|||- -+.+. +.+....+-.++|+++.|+.+| +.++|..+.+.|
T Consensus 84 ~~~~d~vv~DPPF-------l~~ec---------------~~k~a~ti~~L~k~~~kii~~T----g~~~~~~~~~ll-- 135 (162)
T PF10237_consen 84 KGKFDVVVIDPPF-------LSEEC---------------LTKTAETIRLLLKPGGKIILCT----GEEMEELIKKLL-- 135 (162)
T ss_pred CCCceEEEECCCC-------CCHHH---------------HHHHHHHHHHHhCccceEEEec----HHHHHHHHHHHh--
Confidence 3689999999994 12222 3334444555668899999864 568999998888
Q ss_pred CCCcEEEEecC
Q 004763 254 CEGSVELVDVS 264 (732)
Q Consensus 254 ~~~~velvd~s 264 (732)
.++..+..
T Consensus 136 ---~~~~~~f~ 143 (162)
T PF10237_consen 136 ---GLRMCDFQ 143 (162)
T ss_pred ---CeeEEeEE
Confidence 35555543
No 285
>PRK13699 putative methylase; Provisional
Probab=82.93 E-value=2.4 Score=44.31 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl 134 (732)
-.+|+.|||-++|+|+.. .+|..+ ....+++|+++.-+..+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~-~aa~~~----------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTC-VAALQS----------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHH-HHHHHc----------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 468999999999999844 444443 246889999999998888877654
No 286
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.65 E-value=4.3 Score=44.69 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=33.4
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.++ |+....+++++... ....|++.|.++.|+.++. .+|..
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~ 238 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAA------GASQVVAVDLNEDKLALAR----ELGAT 238 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHHH----HcCCc
Confidence 35789999998764 55444443333321 1226999999999988664 46754
No 287
>PRK10458 DNA cytosine methylase; Provisional
Probab=81.96 E-value=4.6 Score=46.78 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=56.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
...+++|+|||-||.+.-+-.+ + --.|.|+|+++..+.+..+|.. +.+...+.+.|...+....+...
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~a-G---------~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~ 154 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAI-G---------GQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGV 154 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHc-C---------CEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCcccccccc
Confidence 3569999999999988877332 1 2378999999999999888731 11223344455444321000000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (732)
+. .............+|.++.-+||-+.-..
T Consensus 155 -~~---~~~~~~~~~~~p~~DvL~gGpPCQ~FS~A 185 (467)
T PRK10458 155 -SD---EEAAEHIRQHIPDHDVLLAGFPCQPFSLA 185 (467)
T ss_pred -ch---hhhhhhhhccCCCCCEEEEcCCCCccchh
Confidence 00 00000000011358999999999886543
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=81.93 E-value=1.9 Score=46.29 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=34.6
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004763 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (732)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (732)
..||.|++|||.-...... +. ...|. ...........+..+.++||+||.|+.. |+.
T Consensus 26 ~siDlIitDPPY~~~~~~~-~~--~~~~~---~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~ 82 (284)
T PRK11524 26 ESVDLIFADPPYNIGKNFD-GL--IEAWK---EDLFIDWLYEWIDECHRVLKKQGTMYIM-NST 82 (284)
T ss_pred CcccEEEECCCcccccccc-cc--ccccc---HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCc
Confidence 6799999999984311110 00 01121 1112223467889999999999998875 554
No 289
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=81.49 E-value=3.2 Score=43.34 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=35.8
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k 132 (732)
..-.++|-|||.|...+-+ -+||.. .=..|+|-|+|.+.+.++..|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVl-GLLh~~------~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVL-GLLHRR------RLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHH-HHHTGG------GEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHH-HHhhhH------HHHhHhcccCCHHHHHHHHHhhh
Confidence 3458999999999987766 456653 23689999999999999888875
No 290
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=80.11 E-value=11 Score=40.15 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
.++++++||..+ +|+....++++.... ...|++.+.+..+...+.
T Consensus 162 ~~~~~~~vli~g--~g~vG~~~~~la~~~-------G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 162 EVKPGETVLVIG--LGGLGLNAVQIAKAM-------GAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCCCCEEEEEC--CcHHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHHH
Confidence 478899999953 344333333333321 246999999998887663
No 291
>PHA01634 hypothetical protein
Probab=79.76 E-value=8.3 Score=37.37 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=39.9
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg 135 (732)
.+.+|+|++|+-|+-++..+-. +...|+|++.+++....+.++++-+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~----------GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR----------GASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc----------CccEEEEeccCHHHHHHHHHHhhhhe
Confidence 3779999999999988776432 25799999999999999999887653
No 292
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=79.01 E-value=0.85 Score=47.20 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
..+++||++||-|-.|.+++-... .|+|-+.|..+...|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe-----------evyATElS~tMr~rL 150 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE-----------EVYATELSWTMRDRL 150 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH-----------HHHHHHhhHHHHHHH
Confidence 347999999999999999876542 478888776655543
No 293
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=77.39 E-value=13 Score=39.91 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=35.6
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl 134 (732)
.+|||++||||.-+..+.+.+.. -..++++|.++..+.+....++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~--------~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPS--------LKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcC--------ceeeeeecCCHHHHHHHHHHHhcc
Confidence 38999999999866655565542 367999999999998777765543
No 294
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.88 E-value=16 Score=39.67 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=32.5
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.+| |+....++++.... ....|++.+.+.+|...+ +.+|..
T Consensus 156 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~----~~~Ga~ 207 (347)
T PRK10309 156 AQGCEGKNVIIIGA--GTIGLLAIQCAVAL------GAKSVTAIDINSEKLALA----KSLGAM 207 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHH----HHcCCc
Confidence 35678999998843 55544443333321 123588999999998865 346653
No 295
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=76.51 E-value=3.3 Score=44.75 Aligned_cols=141 Identities=15% Similarity=0.139 Sum_probs=88.4
Q ss_pred ccccCcEEEccccccchhhhcCC---CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004763 54 ENEIGNITRQEAVSMVPPLFLDV---QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (732)
Q Consensus 54 ~~~~G~i~~Qd~~Smlp~llLd~---~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n 130 (732)
++..|.++.--.+|.+. ++.- -.|..|+=|+ --- .+.||-+|.+- .-+|..+|+|..-+....+-
T Consensus 127 ~yDQgfvTpEttv~Rv~--lm~~RGDL~gK~I~vvG--DDD-Ltsia~aLt~m-------pk~iaVvDIDERli~fi~k~ 194 (354)
T COG1568 127 QYDQGFVTPETTVSRVA--LMYSRGDLEGKEIFVVG--DDD-LTSIALALTGM-------PKRIAVVDIDERLIKFIEKV 194 (354)
T ss_pred hcccccccccceeeeee--eeccccCcCCCeEEEEc--Cch-hhHHHHHhcCC-------CceEEEEechHHHHHHHHHH
Confidence 34556665555555543 3322 2356677776 222 34455555442 35899999999999999999
Q ss_pred HHHcCCCceEEEeccccc-CCCCccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc
Q 004763 131 TKRMCTANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG 209 (732)
Q Consensus 131 ~kRlg~~ni~Vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~ 209 (732)
++.+|..|+.+..+|.++ ||. .-..+||.++-|||-+=.|.
T Consensus 195 aee~g~~~ie~~~~Dlr~plpe--------------------~~~~kFDvfiTDPpeTi~al------------------ 236 (354)
T COG1568 195 AEELGYNNIEAFVFDLRNPLPE--------------------DLKRKFDVFITDPPETIKAL------------------ 236 (354)
T ss_pred HHHhCccchhheeehhcccChH--------------------HHHhhCCeeecCchhhHHHH------------------
Confidence 999999999999998876 221 11268999999999443331
Q ss_pred hHHHHHHHHHHHHhhccCCCEEEE--EcCCCCCcCcHHHHHH
Q 004763 210 LHSLQVQIAMRGISLLKVGGRIVY--STCSMNPVENEAVVAE 249 (732)
Q Consensus 210 L~~lQ~~IL~rAl~lLKpGGrLVY--STCSlnp~ENEaVV~~ 249 (732)
+..|-|++..||--|.--| -|-+-.++.-=.-++.
T Consensus 237 -----k~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr 273 (354)
T COG1568 237 -----KLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQR 273 (354)
T ss_pred -----HHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHH
Confidence 3468888888887643332 2334333333334444
No 296
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.34 E-value=16 Score=39.87 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=33.9
Q ss_pred cCCCCCCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=++||+ |.-++++|..+ ...|++.|.+++|+..+. .+|..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~----------G~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM----------GAAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc----------CCeEEEEcCCHHHHHHHH----HhCCc
Confidence 4678899999988743 33344444443 246999999999987663 45653
No 297
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.63 E-value=14 Score=38.98 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=32.2
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
.+.+|++||=++| |+....+++++... ....|++.|.+.+|+.++. .+|..
T Consensus 117 ~~~~g~~VlV~G~--G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~ 167 (280)
T TIGR03366 117 GDLKGRRVLVVGA--GMLGLTAAAAAAAA------GAARVVAADPSPDRRELAL----SFGAT 167 (280)
T ss_pred cCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCCc
Confidence 4568999998854 55544444433321 1235889999999987654 46754
No 298
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=74.91 E-value=14 Score=39.82 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
.-.|-||+||-+- ||+.. .-.|++.|+- ..|-.|+.+|..+.|-
T Consensus 181 ~~vIaD~GCGEak----iA~~~----------~~kV~SfDL~---------------a~~~~V~~cDm~~vPl------- 224 (325)
T KOG3045|consen 181 NIVIADFGCGEAK----IASSE----------RHKVHSFDLV---------------AVNERVIACDMRNVPL------- 224 (325)
T ss_pred ceEEEecccchhh----hhhcc----------ccceeeeeee---------------cCCCceeeccccCCcC-------
Confidence 4578899999764 43321 3468888862 2233566667666542
Q ss_pred CCCCccccccccccccccccEEEecCCC-CCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPC-SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPC-SGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
+....|++++ | |-.|| .-...+..|.+.||+||.+-..-.+
T Consensus 225 --------------~d~svDvaV~---CLSLMgt---------------------n~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 225 --------------EDESVDVAVF---CLSLMGT---------------------NLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred --------------ccCcccEEEe---eHhhhcc---------------------cHHHHHHHHHHHhccCceEEEEehh
Confidence 2367888776 4 33444 1135688999999999987655332
Q ss_pred CCCcCcHHHHHHHHHHCCCcEEEEecCc
Q 004763 238 MNPVENEAVVAEILRKCEGSVELVDVSN 265 (732)
Q Consensus 238 lnp~ENEaVV~~~L~~~~~~velvd~s~ 265 (732)
+...+-.-...+|..+|-.+.-.+++.
T Consensus 267 -SRf~dv~~f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 267 -SRFSDVKGFVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred -hhcccHHHHHHHHHHcCCeeeehhhhc
Confidence 223444446667777775555555543
No 299
>PLN02740 Alcohol dehydrogenase-like
Probab=73.98 E-value=17 Score=40.20 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=36.0
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
.++++|++||=.+| |+....+++++... +...|++.|.+..|++++. .+|...
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARAR------GASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHC------CCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 46789999998854 66655555544431 1236999999999988774 467643
No 300
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.54 E-value=14 Score=39.87 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=34.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
+.+++|++||=.+ .|+....+++++... +...|++.+.+.+|...+. .+|..
T Consensus 159 ~~~~~g~~vlV~G--~G~vG~~~~~~ak~~------G~~~vi~~~~~~~~~~~~~----~~ga~ 210 (339)
T cd08239 159 VGVSGRDTVLVVG--AGPVGLGALMLARAL------GAEDVIGVDPSPERLELAK----ALGAD 210 (339)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HhCCC
Confidence 4678899999884 366655555544431 1224999999999987653 46654
No 301
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.78 E-value=26 Score=41.21 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=37.0
Q ss_pred cCCCCCCEEEeecCCCChH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
++..|+++|+=++||+=|. ++++|..++ ..|+++|.++.|++.+ +.+|..
T Consensus 160 aG~~pg~kVlViGaG~iGL~Ai~~Ak~lG----------A~V~a~D~~~~rle~a----eslGA~ 210 (509)
T PRK09424 160 AGKVPPAKVLVIGAGVAGLAAIGAAGSLG----------AIVRAFDTRPEVAEQV----ESMGAE 210 (509)
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHH----HHcCCe
Confidence 3567899999999998665 445555442 3799999999998754 457764
No 302
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.54 E-value=14 Score=40.80 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=33.4
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.+| |+....++++.... ....|++.|.+.+|+.++. ++|..
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~------G~~~Vi~~~~~~~~~~~a~----~~Ga~ 232 (368)
T TIGR02818 181 AKVEEGDTVAVFGL--GGIGLSVIQGARMA------KASRIIAIDINPAKFELAK----KLGAT 232 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHH----HhCCC
Confidence 46789999998854 55443333333221 1127999999999988763 46764
No 303
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=68.67 E-value=26 Score=37.52 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=33.0
Q ss_pred cCCCCCCEEEeecCC--CChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
..+++|++||=.+|+ -|..++|+|..+ ...|++.+.+.++...+ +.+|...
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~----------G~~Vi~~~~s~~~~~~~----~~lGa~~ 186 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK----------GCKVVGAAGSDEKVAYL----KKLGFDV 186 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHH----HHcCCCE
Confidence 357899999966643 333445555442 24689999988887766 3467643
No 304
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=68.19 E-value=22 Score=39.93 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=32.2
Q ss_pred cCCCCCCEEEeecC-C-CChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004763 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (732)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~ 129 (732)
..+++|++||=.++ | -|-.++|+|..++. ....|++.|.+..|++.+++
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~-------g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPI-------GPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhccc-------CCceEEEEcCCHHHHHHHHH
Confidence 45789999886653 2 23344555554321 12379999999999987765
No 305
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=67.78 E-value=14 Score=40.48 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=35.4
Q ss_pred cCCCCCCEEEeecCC--CChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
..+++|++||=.+|+ -|..++|+|..++ ..|++.+.+.++...+.. .+|...
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G----------~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG----------CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 357899999877662 4555666666542 469999999988776542 367643
No 306
>PLN02827 Alcohol dehydrogenase-like
Probab=67.56 E-value=27 Score=38.78 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=33.9
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
.++++|++||=.++ |+....++++.... ....|++.|.+..|...+ +.+|..
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a----~~lGa~ 240 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLR------GASQIIGVDINPEKAEKA----KTFGVT 240 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHH----HHcCCc
Confidence 45789999998853 66555544444321 123688999999988765 457764
No 307
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.51 E-value=22 Score=39.46 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=43.1
Q ss_pred CCCCCCEEEeecC-CCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEecccc
Q 004763 75 DVQPDHFVLDMCA-APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQ 147 (732)
Q Consensus 75 d~~pg~~VLDmCA-APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~-~Rl~~L~~n~kRlg~~ni~Vt~~Da~ 147 (732)
++.||.+|-=.++ |-|+.+.|+|.+|+ -+|+++|.+. +|-+. +++||...+++...|..
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG----------~rV~vis~~~~kkeea----~~~LGAd~fv~~~~d~d 238 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG----------MRVTVISTSSKKKEEA----IKSLGADVFVDSTEDPD 238 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC----------cEEEEEeCCchhHHHH----HHhcCcceeEEecCCHH
Confidence 5678987765555 47899999999985 4899999987 55443 46789887776654443
No 308
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.95 E-value=12 Score=37.32 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=40.7
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCC
Q 004763 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (732)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~ 256 (732)
+|.|+.|||.-..-.- .....+.. ..............+..+.++||+||.++.. |+-..... .++..+++..+
T Consensus 1 VdliitDPPY~~~~~~-~~~~~~~~--~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~-~~~~~~~~-~~~~~~~~~~g- 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY-NNYFDYGD--NKNHEEYLEWMEEWLKECYRVLKPGGSIFIF-IDDREIAG-FLFELALEIFG- 74 (231)
T ss_dssp EEEEEE---TSSSCS------CSCH--CCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-E-CCEECT-HHHHHHHHHHT-
T ss_pred CCEEEECCCCCCCCCc-chhhhccC--CCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE-ecchhhhH-HHHHHHHHHhh-
Confidence 4899999996554320 00000000 0112233445678899999999999997654 55443333 35566666655
Q ss_pred cEEEEe
Q 004763 257 SVELVD 262 (732)
Q Consensus 257 ~velvd 262 (732)
.+.+.+
T Consensus 75 ~~~~~~ 80 (231)
T PF01555_consen 75 GFFLRN 80 (231)
T ss_dssp T-EEEE
T ss_pred hhheec
Confidence 454444
No 309
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=64.67 E-value=41 Score=35.49 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=65.9
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc-CCCCccC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPGCRAN 155 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~-fp~~~~~ 155 (732)
..|.+||.++=|-|-..+.+-+. +--.-+-++.++.-++.++...=+- -.|+++..+-=++ .+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~----------~p~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~---- 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA----------PPDEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNT---- 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc----------CCcceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhcc----
Confidence 56889999999988766655433 2234456677887777666543221 2467766543222 111
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.....||-|+-|.= + ....|+| ..-.++.++|||||.+-|
T Consensus 165 ----------------L~d~~FDGI~yDTy----~--e~yEdl~----------------~~hqh~~rLLkP~gv~Sy-- 204 (271)
T KOG1709|consen 165 ----------------LPDKHFDGIYYDTY----S--ELYEDLR----------------HFHQHVVRLLKPEGVFSY-- 204 (271)
T ss_pred ----------------ccccCcceeEeech----h--hHHHHHH----------------HHHHHHhhhcCCCceEEE--
Confidence 12255999999852 0 0112222 233489999999997766
Q ss_pred CCCCCcCc
Q 004763 236 CSMNPVEN 243 (732)
Q Consensus 236 CSlnp~EN 243 (732)
|-..-..|
T Consensus 205 fNg~~~~~ 212 (271)
T KOG1709|consen 205 FNGLGADN 212 (271)
T ss_pred ecCcccch
Confidence 55443333
No 310
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.62 E-value=48 Score=33.72 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=41.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +.-|+|+...+++..+... .-.|++.+.+...+..+...++..+ .++.+...|..+
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 64 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKE-------GAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTD 64 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 34555 5556788899999888652 3479999999888877766665544 345555566543
No 311
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=63.38 E-value=23 Score=39.46 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=60.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~ 158 (732)
-...+|+++|-|..+-+++... | .|-+++.+..-+-....++. -| |.-+-+|... .
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f---------p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq--~------- 233 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY---------P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQ--D------- 233 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC---------C--CCceeecCHHHHHhhhhhhc-CC---cceecccccc--c-------
Confidence 3789999999999999987732 2 25566666665554444443 33 2222233211 1
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004763 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (732)
...-|.|++ --+...|+-++ -.+||+|+.+.|+|||.|+..-|=+
T Consensus 234 ---------------~P~~daI~m-------------kWiLhdwtDed-------cvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 234 ---------------TPKGDAIWM-------------KWILHDWTDED-------CVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred ---------------CCCcCeEEE-------------EeecccCChHH-------HHHHHHHHHHhCCCCCEEEEEeccC
Confidence 012345544 01112343332 3679999999999999999876533
No 312
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=62.96 E-value=54 Score=33.15 Aligned_cols=127 Identities=22% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH------------HHHcC-CCceEEEecccccCCCCcc
Q 004763 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ------------TKRMC-TANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n------------~kRlg-~~ni~Vt~~Da~~fp~~~~ 154 (732)
|-|...+-+|..+... .-.|+++|++++++..+..- +++.. ..++.++..
T Consensus 7 GlGyvGl~~A~~lA~~-------G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~---------- 69 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEK-------GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTD---------- 69 (185)
T ss_dssp --STTHHHHHHHHHHT-------TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESE----------
T ss_pred CCCcchHHHHHHHHhC-------CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhh----------
Confidence 6677777777666652 24899999999999877531 11111 122222210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (732)
........|.|++-+|.--+. ...|| +.. -...++...+.+++|-.+|+
T Consensus 70 ---------------~~~ai~~adv~~I~VpTP~~~--~~~~D------------ls~-v~~a~~~i~~~l~~~~lvV~- 118 (185)
T PF03721_consen 70 ---------------IEEAIKDADVVFICVPTPSDE--DGSPD------------LSY-VESAIESIAPVLRPGDLVVI- 118 (185)
T ss_dssp ---------------HHHHHHH-SEEEE----EBET--TTSBE------------THH-HHHHHHHHHHHHCSCEEEEE-
T ss_pred ---------------hhhhhhccceEEEecCCCccc--cCCcc------------HHH-HHHHHHHHHHHHhhcceEEE-
Confidence 000114568888766532222 11222 222 23456666677888555555
Q ss_pred cCCCCCcCcHHHHHHHHHHCCC---cEEEEe
Q 004763 235 TCSMNPVENEAVVAEILRKCEG---SVELVD 262 (732)
Q Consensus 235 TCSlnp~ENEaVV~~~L~~~~~---~velvd 262 (732)
-+|+.|--.+.++..+|++.++ .|.+.-
T Consensus 119 ~STvppGtt~~~~~~ile~~~~~~~~f~la~ 149 (185)
T PF03721_consen 119 ESTVPPGTTEELLKPILEKRSGKKEDFHLAY 149 (185)
T ss_dssp SSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE
T ss_pred ccEEEEeeehHhhhhhhhhhcccccCCeEEE
Confidence 5889999999999999998764 355544
No 313
>PRK13699 putative methylase; Provisional
Probab=61.87 E-value=33 Score=35.84 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=40.3
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHH
Q 004763 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (732)
Q Consensus 174 ~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~ 253 (732)
...+|.|+.|||.-- |.-.+.-.. +. ...........+..+.++||+||.++ +-|+.+. -..+..++++
T Consensus 18 d~SVDLIiTDPPY~i-~~~~~~~~~---~~---~~~~~ew~~~~l~E~~RVLKpgg~l~-if~~~~~---~~~~~~al~~ 86 (227)
T PRK13699 18 DNAVDFILTDPPYLV-GFRDRQGRT---IA---GDKTDEWLQPACNEMYRVLKKDALMV-SFYGWNR---VDRFMAAWKN 86 (227)
T ss_pred ccccceEEeCCCccc-ccccCCCcc---cc---cccHHHHHHHHHHHHHHHcCCCCEEE-EEecccc---HHHHHHHHHH
Confidence 378999999999842 211000000 00 01122334578899999999988765 4577643 2334445565
Q ss_pred CC
Q 004763 254 CE 255 (732)
Q Consensus 254 ~~ 255 (732)
.|
T Consensus 87 ~G 88 (227)
T PRK13699 87 AG 88 (227)
T ss_pred CC
Confidence 54
No 314
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=61.83 E-value=50 Score=36.26 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=34.0
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
..+++|++||=++ .|+....++++.... +...|++.|.+..|...+. .+|...
T Consensus 180 ~~~~~g~~vlV~G--~g~vG~~~~~~a~~~------G~~~Vi~~~~~~~~~~~~~----~~ga~~ 232 (365)
T cd08277 180 AKVEPGSTVAVFG--LGAVGLSAIMGAKIA------GASRIIGVDINEDKFEKAK----EFGATD 232 (365)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HcCCCc
Confidence 3578999999874 366554444433321 1127999999999988763 466543
No 315
>PRK12939 short chain dehydrogenase; Provisional
Probab=61.33 E-value=54 Score=33.15 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=41.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +..|.|+....++..+... .-.|++.+.+...+..+...++..+ .++.+...|..+
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEA-------GATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLAD 67 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 56676 5556788889998887652 2468888888887776666554443 346666666654
No 316
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=61.14 E-value=8.1 Score=35.39 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=52.0
Q ss_pred CccEEEEceEeeEEEecCCCCCCcccceeeccCchhhhhhcccCcEEecCHHHHHHHhhcCCCCccCCCChHHHHHHhcC
Q 004763 556 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKL 635 (732)
Q Consensus 556 ~~lkii~~GvK~F~rq~~~~~~~~~c~~Ri~~eGl~~l~p~~~~r~v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l 635 (732)
++|||+..|+++=+... =+|+.++.++..+.+.-.+++|.++.++.+..|..+.+..+. -
T Consensus 11 ~~l~v~r~Gl~lg~~~k--------~~f~Ps~~la~~~~~~~~~~~iel~~e~a~~yl~Ge~i~~~~------------~ 70 (102)
T PF13636_consen 11 PGLKVLRAGLYLGEIKK--------NRFEPSHALAMALGPEATKNVIELDDEQALRYLRGEDIELDP------------P 70 (102)
T ss_dssp TTSEECECSEEEEEEET--------TEEEEBHHHHHCB--GCCS-EEEETCHHHHHHHCT--EE-SS-------------
T ss_pred CCCeEEecCcEeeeEeC--------CcEEECHHHHHhhCccccceEEECCHHHHHHHHcCCcccCCC------------C
Confidence 57999999999987652 289999999999999988999999999999999876655432 1
Q ss_pred CCceEEEEEe
Q 004763 636 MMGCCVIVLS 645 (732)
Q Consensus 636 ~~G~~vl~~~ 645 (732)
..|=++|.++
T Consensus 71 ~~G~vlv~~~ 80 (102)
T PF13636_consen 71 DKGWVLVTYE 80 (102)
T ss_dssp -EEEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 3577777776
No 317
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=60.34 E-value=41 Score=36.96 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=29.7
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
.++++|+.||=.++ |+....++++.... +...|++.|.+..|...+.
T Consensus 182 ~~~~~g~~vlI~g~--g~vG~~~~~la~~~------G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 182 LKPRPGSSIAVFGA--GAVGLAAVMAAKIA------GCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH
Confidence 45788999998843 55433333333221 1236999999999887654
No 318
>PRK06194 hypothetical protein; Provisional
Probab=59.17 E-value=1.2e+02 Score=31.78 Aligned_cols=61 Identities=7% Similarity=0.089 Sum_probs=40.9
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +.-|.|+...++++.|... ...|++.|.+..++..+...+...+ .++.+...|..+
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAAL-------GMKLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSD 66 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 45677 5566788888898888752 3478899998877766655554333 245566677654
No 319
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=59.07 E-value=59 Score=35.07 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=33.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
..+++|++||=.+| +|+....++++.... ...|++.+.+.++...++. .+|...
T Consensus 147 ~~~~~g~~VlI~Ga-~G~vG~~aiqlAk~~-------G~~Vi~~~~~~~~~~~~~~---~lGa~~ 200 (338)
T cd08295 147 CKPKKGETVFVSAA-SGAVGQLVGQLAKLK-------GCYVVGSAGSDEKVDLLKN---KLGFDD 200 (338)
T ss_pred cCCCCCCEEEEecC-ccHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHH---hcCCce
Confidence 46889999996654 344443333333321 2468888888888776643 266643
No 320
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=58.75 E-value=89 Score=33.13 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=34.7
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|.+||=.+ .|+....+++.+... ...|++.+.+.++...+.. +|..
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~-------G~~vi~~~~~~~~~~~~~~----~g~~ 201 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALT-------GPDVVLVGRHSEKLALARR----LGVE 201 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc-------CCeEEEEcCCHHHHHHHHH----cCCc
Confidence 4578899998773 477666665555432 2358999999988877654 5654
No 321
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=58.42 E-value=38 Score=36.30 Aligned_cols=47 Identities=19% Similarity=0.158 Sum_probs=28.1
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
..+++|++||-.++ |+....+++++... +.+.|++.+.+..+...+.
T Consensus 163 ~~~~~~~~VlI~g~--g~vg~~~iqlak~~------g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 163 AGIKPGSTVAVIGA--GPVGLCAVAGARLL------GAARIIAVDSNPERLDLAK 209 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHH
Confidence 45788999999543 54433333333221 1247888888888876554
No 322
>PRK06181 short chain dehydrogenase; Provisional
Probab=57.69 E-value=72 Score=32.80 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=40.2
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.|| +.-|+|+....++..+... ...|++.+.+......+.+.++..+. ++.+...|..+
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~-------g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 61 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARA-------GAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSD 61 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 455 4557788888888877642 35899999998777766666665543 45666666554
No 323
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=57.60 E-value=60 Score=35.66 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=34.3
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.++ |+....+++++... +...|++.|.+.+|+..+. .+|..
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~------G~~~vi~~~~~~~~~~~~~----~lGa~ 233 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAA------GASRIIGIDINPDKFELAK----KFGAT 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 45789999998853 55554444444321 1236999999999988663 46754
No 324
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=56.68 E-value=23 Score=39.85 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=71.5
Q ss_pred ccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecc
Q 004763 67 SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHE 145 (732)
Q Consensus 67 Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~D 145 (732)
..+..+....+|+..++|+.++-|+-+..++.. . ...++++|.+...+.+........++.+ ..+..+|
T Consensus 99 ~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~---------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~ 168 (364)
T KOG1269|consen 99 EGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-K---------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVAD 168 (364)
T ss_pred cchHHHhhcCcccccccccCcCcCchhHHHHHh-c---------cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhh
Confidence 344555667889999999999999998888765 2 3467888888877776665555444432 1223344
Q ss_pred cccCCCCccCCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004763 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (732)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~-DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~l 224 (732)
..+.| .....||.|-+ |+-|-. |+. ...+.+.++.
T Consensus 169 ~~~~~---------------------fedn~fd~v~~ld~~~~~-------~~~----------------~~~y~Ei~rv 204 (364)
T KOG1269|consen 169 FGKMP---------------------FEDNTFDGVRFLEVVCHA-------PDL----------------EKVYAEIYRV 204 (364)
T ss_pred hhcCC---------------------CCccccCcEEEEeecccC-------CcH----------------HHHHHHHhcc
Confidence 43322 23467887753 433321 111 2456777888
Q ss_pred ccCCCEEE
Q 004763 225 LKVGGRIV 232 (732)
Q Consensus 225 LKpGGrLV 232 (732)
++|||..+
T Consensus 205 ~kpGG~~i 212 (364)
T KOG1269|consen 205 LKPGGLFI 212 (364)
T ss_pred cCCCceEE
Confidence 99999875
No 325
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=56.60 E-value=77 Score=33.58 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=32.0
Q ss_pred cCCCCCCEEEeecCCCChH---HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSK---TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsK---T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.+| .|+. ++|+|..+ ...|++.+.+.++...++ .+|..
T Consensus 139 ~~~~~g~~vlI~ga-~g~vG~~aiqlA~~~----------G~~vi~~~~s~~~~~~l~----~~Ga~ 190 (329)
T cd08294 139 CKPKAGETVVVNGA-AGAVGSLVGQIAKIK----------GCKVIGCAGSDDKVAWLK----ELGFD 190 (329)
T ss_pred cCCCCCCEEEEecC-ccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH----HcCCC
Confidence 45789999986543 3444 44455443 246899999888887664 36764
No 326
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=56.30 E-value=16 Score=41.27 Aligned_cols=63 Identities=24% Similarity=0.132 Sum_probs=41.9
Q ss_pred CcEEEcc-ccccchhhhcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004763 58 GNITRQE-AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (732)
Q Consensus 58 G~i~~Qd-~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~ 131 (732)
+.+|-|- .-..+-..+|++.|+++||=+++|-.+--..| .. ....|+|+|+|+.-.++|.=.+
T Consensus 14 ~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N~L~yL----~~-------~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 14 GLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCNALDYL----LA-------GPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred ceeeccccCCcHHHHHHhCCCCCCeEEEEccCCchHHHHH----hc-------CCceEEEEeCCHHHHHHHHHHH
Confidence 5556551 22223335789999999999998755543332 22 1479999999999888875433
No 327
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.77 E-value=94 Score=32.25 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=66.7
Q ss_pred CCCEEEeecCCCC-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
.|..||=.+|++| +....++..+... ...|+..+.+.+....+.+..+.++ .+.+...|..+...+.-
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~-------G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~-- 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRAL-------GAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEA-- 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc-------CCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHH--
Confidence 3678898898884 8888888877642 3467778887654444444333333 23344556544221100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCC----Cccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtlr-k~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
............|.++..+-.... +.+. -.++-|.+ .-..++. -...+++.++.+++.+|+|
T Consensus 78 ---------~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~---~~~vN~~-~~~~~~~~~~p~m~~~g~I 144 (258)
T PRK07533 78 ---------VFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFAL---AMDVSCH-SFIRMARLAEPLMTNGGSL 144 (258)
T ss_pred ---------HHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHH---HHhhhhH-HHHHHHHHHHHHhccCCEE
Confidence 000001122568988876522110 1111 12222322 1111111 1234556667777778888
Q ss_pred EEE
Q 004763 232 VYS 234 (732)
Q Consensus 232 VYS 234 (732)
|..
T Consensus 145 i~i 147 (258)
T PRK07533 145 LTM 147 (258)
T ss_pred EEE
Confidence 764
No 328
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=55.17 E-value=42 Score=36.04 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCCCC--CEEEeecCC--CChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 75 DVQPD--HFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 75 d~~pg--~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
.+++| ++||=.+|+ -|..+.|+|..++ ...|++.+.+.+|...+.. .+|...
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G---------~~~Vi~~~~s~~~~~~~~~---~lGa~~ 204 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG---------CSRVVGICGSDEKCQLLKS---ELGFDA 204 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHH---hcCCcE
Confidence 46666 888876652 3344555555432 1269999999988876654 367644
No 329
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=54.68 E-value=13 Score=34.99 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhccCCCEEEE
Q 004763 214 QVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVY 233 (732)
-++++++..++|+|||++|.
T Consensus 23 l~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 23 LKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCCEEEE
Confidence 36789999999999999985
No 330
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.60 E-value=93 Score=32.37 Aligned_cols=64 Identities=6% Similarity=0.023 Sum_probs=36.6
Q ss_pred CCCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 78 PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 78 pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.|..+|=.+|++ ++....++..+... ...|+..+.+.+....+......+...++.+...|..+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 70 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNA-------GAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS 70 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC-------CCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC
Confidence 367888888874 88889999888752 34677766543222223222233322345555566554
No 331
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=54.23 E-value=48 Score=30.38 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=47.4
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC-CC-CcCcHHHHHHHHHH
Q 004763 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS-MN-PVENEAVVAEILRK 253 (732)
Q Consensus 176 ~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS-ln-p~ENEaVV~~~L~~ 253 (732)
+||.|+-+||......+........ .-..+..-.+.+|+++| +|.+.|-|-+ +. ..+.-.-..+.|-.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~--------~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKK--------KKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhhccc--------ccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 5999999999876654322111100 12344556788999999 9999887655 33 34555555666554
Q ss_pred CCCcEEEEec
Q 004763 254 CEGSVELVDV 263 (732)
Q Consensus 254 ~~~~velvd~ 263 (732)
...-..+++.
T Consensus 72 ~~~i~~i~~f 81 (106)
T PF07669_consen 72 NTNIKKIIDF 81 (106)
T ss_pred CCCeeEEEEC
Confidence 4333455554
No 332
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=54.21 E-value=75 Score=34.07 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.8
Q ss_pred HHHHHHhhccCCCEEEEE
Q 004763 217 IAMRGISLLKVGGRIVYS 234 (732)
Q Consensus 217 IL~rAl~lLKpGGrLVYS 234 (732)
.+..++++|++||++|+.
T Consensus 213 ~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 213 LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHHHHhhhcCcEEEEE
Confidence 356788999999999964
No 333
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=54.21 E-value=46 Score=35.75 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=27.5
Q ss_pred hcCCCCCCEEEeecCCCChH---HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 73 FLDVQPDHFVLDMCAAPGSK---TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsK---T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
.+.+++|.+||-.++ |+. +.++|..++ ...|++.+.+..+...+
T Consensus 154 ~~~~~~~~~vlI~g~--g~~g~~~~~lA~~~G---------~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 154 LAGITLGDTVVVIGA--GTIGLLAIQWLKILG---------AKRVIAVDIDDEKLAVA 200 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHH
Confidence 346788999999843 543 344444322 22488888877776655
No 334
>PRK05599 hypothetical protein; Provisional
Probab=53.95 E-value=81 Score=32.46 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=42.3
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~f 149 (732)
.|| +.-|.++....++..+.. ...|+..+.+..+++.+.+.++..+...+.+...|..+.
T Consensus 2 ~vl-ItGas~GIG~aia~~l~~--------g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 2 SIL-ILGGTSDIAGEIATLLCH--------GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL 61 (246)
T ss_pred eEE-EEeCccHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCH
Confidence 345 344567778888888763 367888899999998888877766654466666776653
No 335
>PRK08339 short chain dehydrogenase; Provisional
Probab=52.86 E-value=1.9e+02 Score=30.09 Aligned_cols=62 Identities=6% Similarity=0.082 Sum_probs=42.2
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
|..+|=.+ |.|+....+++.+... ...|+.++.+..++..+.+.++.....++.+...|..+
T Consensus 8 ~k~~lItG-as~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 8 GKLAFTTA-SSKGIGFGVARVLARA-------GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 55666444 5567788888887652 35799999999988887777655432356666667665
No 336
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=52.57 E-value=92 Score=33.14 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=29.2
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
...+++|.+||-.+ + |+....+++.+... +-..|++.+.+.++...+
T Consensus 154 ~~~~~~g~~vlI~g-~-g~vg~~~~~la~~~------G~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 154 LLGIKPGDSVLVFG-A-GPIGLLLAQLLKLN------GASRVTVAEPNEEKLELA 200 (334)
T ss_pred hcCCCCCCEEEEEC-C-CHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHH
Confidence 34678899999994 3 55444333333321 112488889998887766
No 337
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=52.13 E-value=71 Score=35.89 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=31.9
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=. |.|+....++++.... ....|++.|.+..|+.+++ ++|..
T Consensus 181 ~~~~~g~~VlV~--G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~----~~Ga~ 232 (393)
T TIGR02819 181 AGVGPGSTVYIA--GAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQAR----SFGCE 232 (393)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHH----HcCCe
Confidence 357889999874 4455544444433321 1235677899988888664 46763
No 338
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=51.43 E-value=79 Score=34.63 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=34.4
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.++ |+....+++++... +...|++.|.+.+|...+ +.+|..
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~------G~~~vi~~~~~~~~~~~~----~~~Ga~ 234 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIR------GASRIIGVDLNPSKFEQA----KKFGVT 234 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHH----HHcCCc
Confidence 46789999988743 66655544444321 123799999999998865 446754
No 339
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=50.84 E-value=49 Score=35.45 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=38.1
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
.+.+.++|+|++||-=-.++-.. +. .+....+|.|+|...++.+.+-+..++..
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~---~~------~~~a~Y~a~DID~~~ve~l~~~l~~l~~~ 155 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWM---PE------APGATYIAYDIDSQLVEFLNAFLAVLGVP 155 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTT---TS------STT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred cCCCCchhhhhhccCCceehhhc---cc------CCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 34557899999999877666542 21 23569999999999999999999999854
No 340
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=50.48 E-value=30 Score=39.79 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=46.1
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQ 147 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~ 147 (732)
.|||+++|+|-.+..++.+. .-.|+|+++-..+...+++-....|. .+|.|+|--.+
T Consensus 69 ~vLdigtGTGLLSmMAvrag----------aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG----------ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHHhc----------CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc
Confidence 69999999998887776653 24699999999999999999988884 56777765433
No 341
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=50.46 E-value=74 Score=32.92 Aligned_cols=45 Identities=20% Similarity=0.040 Sum_probs=28.8
Q ss_pred hcCCCCCCEEEeecCCCChH---HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 73 FLDVQPDHFVLDMCAAPGSK---TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsK---T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
...+++|++||=.+ .|+. +.++|..++ ...|++.+.+.+|+..+.
T Consensus 92 ~~~~~~g~~vlI~g--~g~vg~~~i~~a~~~g---------~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 92 DAEPRLGERVAVVG--LGLVGLLAAQLAKAAG---------AREVVGVDPDAARRELAE 139 (277)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHcC---------CCcEEEECCCHHHHHHHH
Confidence 34678899999884 3553 344444432 124999999999877443
No 342
>PRK08324 short chain dehydrogenase; Validated
Probab=50.22 E-value=86 Score=37.98 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=69.4
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
+|..||=.+ |.|+....++..+... ...|+++|.+..++..+...+... ..+.+...|..+...+. .
T Consensus 421 ~gk~vLVTG-asggIG~~la~~L~~~-------Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~--~- 487 (681)
T PRK08324 421 AGKVALVTG-AAGGIGKATAKRLAAE-------GACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQ--A- 487 (681)
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHC-------cCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHH--H-
Confidence 456777444 5677888888877642 347999999998877665544322 34555556654421110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccC---CCEEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV---GGRIVY 233 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKp---GGrLVY 233 (732)
...........+|.|+..+-.+..+.+.. .++.|...-.. ...-...+++.++++++. ||++|+
T Consensus 488 --------~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~----N~~g~~~l~~~~~~~l~~~~~~g~iV~ 555 (681)
T PRK08324 488 --------AFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDV----NATGHFLVAREAVRIMKAQGLGGSIVF 555 (681)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH----HhHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 00000011246899987553333333221 12223221111 111234456667777766 788887
Q ss_pred Ec
Q 004763 234 ST 235 (732)
Q Consensus 234 ST 235 (732)
.+
T Consensus 556 vs 557 (681)
T PRK08324 556 IA 557 (681)
T ss_pred EC
Confidence 54
No 343
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=49.72 E-value=24 Score=39.10 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=36.2
Q ss_pred hcCCCCCCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004763 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~ 129 (732)
++.+++|.+||..++|+ |..+.++|..++ .+.|++.|.+..+...++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g---------~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG---------AERVIAIDRVPERLEMARS 227 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHH
Confidence 45678999999997665 556677777642 2469999999999887665
No 344
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=49.59 E-value=1.7e+02 Score=29.89 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=43.0
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +..|.|+...+++..|... ...|++.+.++.+...+.+.++..+. .+.+...|..+
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 67 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARA-------GAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTN 67 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHC-------CCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCC
Confidence 55666 6667788888888888652 34789999999888888777765543 35555666554
No 345
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=49.05 E-value=1.5e+02 Score=28.01 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=57.9
Q ss_pred cCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCCCCCCCc
Q 004763 86 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASD 163 (732)
Q Consensus 86 CAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid--~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~ 163 (732)
..|.|+....++..+... ....|+....+ ..+...+.+.++..+ .++.+...|......+.
T Consensus 6 tGa~~giG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~---------- 68 (167)
T PF00106_consen 6 TGASSGIGRALARALARR------GARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIR---------- 68 (167)
T ss_dssp ETTTSHHHHHHHHHHHHT------TTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHH----------
T ss_pred ECCCCHHHHHHHHHHHhc------CceEEEEeeecccccccccccccccccc-ccccccccccccccccc----------
Confidence 446678888888887752 24578888888 788888888887776 67777777765421110
Q ss_pred cccccccccccccccEEEecCCCCCCCccccC
Q 004763 164 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (732)
Q Consensus 164 ~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~ 195 (732)
............+|.+++.+.....+.+...
T Consensus 69 -~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~ 99 (167)
T PF00106_consen 69 -ALIEEVIKRFGPLDILINNAGIFSDGSLDDL 99 (167)
T ss_dssp -HHHHHHHHHHSSESEEEEECSCTTSBSGGGS
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 0000111233679999986655555555443
No 346
>PRK07326 short chain dehydrogenase; Provisional
Probab=49.02 E-value=1.1e+02 Score=30.89 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=39.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..||=.+ |.|+....++..+... .-.|++.+.++.+...+...+... ..+.+...|..+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAE-------GYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHC-------CCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 55677555 5788888888877642 247999999988877666655432 345555555543
No 347
>PRK08643 acetoin reductase; Validated
Probab=48.80 E-value=2e+02 Score=29.30 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=40.9
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.|| +.-|.|+...++++.+... ...|+..+.+..++..+...+...+ ..+.+...|..+
T Consensus 4 ~~l-ItGas~giG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 62 (256)
T PRK08643 4 VAL-VTGAGQGIGFAIAKRLVED-------GFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSD 62 (256)
T ss_pred EEE-EECCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 444 5567788889999888752 3478999999888877777666554 345555666554
No 348
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=48.68 E-value=78 Score=33.89 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCCCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 77 QPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 77 ~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
.+|.+||-..+|. |..+.++|..++ ...|++.+.+..+..++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G---------~~~v~~~~~s~~~~~~~ 206 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAG---------AAEIVATDLADAPLAVA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHH
Confidence 4899999854332 223444444431 12688999888877744
No 349
>PRK12937 short chain dehydrogenase; Provisional
Probab=48.53 E-value=1.2e+02 Score=30.59 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=67.0
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
+..|| +.-|.|+....++..+... ...|+.... +..+...+.+.+...+ .++.+...|..+...+.-
T Consensus 5 ~~~vl-ItG~~~~iG~~la~~l~~~-------g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~--- 72 (245)
T PRK12937 5 NKVAI-VTGASRGIGAAIARRLAAD-------GFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTR--- 72 (245)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC-------CCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHH---
Confidence 33444 4445688888998888752 235555443 4455565666665554 345666666554221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
............|.|+..+.=.+.+.+...+ +..|...-... ..-...++..+++.++.+|++|+.+++
T Consensus 73 --------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~--~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (245)
T PRK12937 73 --------LFDAAETAFGRIDVLVNNAGVMPLGTIADFD--LEDFDRTIATN-LRGAFVVLREAARHLGQGGRIINLSTS 141 (245)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCC--HHHHHHHHhhh-chHHHHHHHHHHHHhccCcEEEEEeec
Confidence 0000001124678888754211111111111 11121110011 112334566777777788999999875
Q ss_pred C
Q 004763 238 M 238 (732)
Q Consensus 238 l 238 (732)
.
T Consensus 142 ~ 142 (245)
T PRK12937 142 V 142 (245)
T ss_pred c
Confidence 4
No 350
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=48.14 E-value=59 Score=34.13 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=46.1
Q ss_pred chhhhcCCCCCCEEEeecCCCC--hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecc
Q 004763 69 VPPLFLDVQPDHFVLDMCAAPG--SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHE 145 (732)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPG--sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n-i~Vt~~D 145 (732)
|.+++.+-+ -..+++.|+.-| +.|+.|+.+-+.. .|++|++-.+........+.+..++..+ +.++.++
T Consensus 33 ISAlAAG~n-AkliVe~~s~g~~~~ttiaLaaAAr~T-------gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 33 ISALAAGWN-AKLIVEAWSSGGAISTTIALAAAARQT-------GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred HHHHhcccc-ceEEEEEecCCCchHhHHHHHHHHHhc-------CCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 344444433 346777765533 4577777776653 6999999999888777777787777654 4666565
Q ss_pred c
Q 004763 146 A 146 (732)
Q Consensus 146 a 146 (732)
+
T Consensus 105 ~ 105 (218)
T PF07279_consen 105 A 105 (218)
T ss_pred C
Confidence 4
No 351
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.81 E-value=1.2e+02 Score=33.15 Aligned_cols=50 Identities=8% Similarity=-0.120 Sum_probs=29.0
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
+++|++||=++ .|+....++++.... ...|++.+.+.++...+ ++++|..
T Consensus 178 ~~~g~~vlV~G--~G~vG~~av~~Ak~~-------G~~vi~~~~~~~~~~~~---~~~~Ga~ 227 (357)
T PLN02514 178 KQSGLRGGILG--LGGVGHMGVKIAKAM-------GHHVTVISSSDKKREEA---LEHLGAD 227 (357)
T ss_pred CCCCCeEEEEc--ccHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHH---HHhcCCc
Confidence 36899998773 455544444433321 23578888877765443 2357764
No 352
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=47.40 E-value=1.3e+02 Score=32.50 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=29.1
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
...+++|.+||=.++ |+....+++++... +...|++.+.+.++...+.
T Consensus 157 ~~~~~~g~~vlI~g~--g~vG~~a~~lak~~------G~~~v~~~~~~~~~~~~~~ 204 (343)
T cd05285 157 RAGVRPGDTVLVFGA--GPIGLLTAAVAKAF------GATKVVVTDIDPSRLEFAK 204 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHH
Confidence 446789999998643 55444333333321 1123888888888877663
No 353
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=47.15 E-value=3.8e+02 Score=32.24 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=46.0
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--------CceEEEec
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--------ANLIVTNH 144 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~--------~ni~Vt~~ 144 (732)
-++.+.|..||=.+ |.|+....++..|... ...|++.+.+..++..+...+..++. .++.++.+
T Consensus 74 ~~~~~~gKvVLVTG-ATGgIG~aLAr~LLk~-------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~g 145 (576)
T PLN03209 74 ELDTKDEDLAFVAG-ATGKVGSRTVRELLKL-------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVEC 145 (576)
T ss_pred ccccCCCCEEEEEC-CCCHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEe
Confidence 35666787777555 5688888888887652 34799999999988777665544221 24666667
Q ss_pred cccc
Q 004763 145 EAQH 148 (732)
Q Consensus 145 Da~~ 148 (732)
|..+
T Consensus 146 DLtD 149 (576)
T PLN03209 146 DLEK 149 (576)
T ss_pred cCCC
Confidence 7654
No 354
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=46.07 E-value=2.4e+02 Score=32.38 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=66.0
Q ss_pred CCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH--------Hc-CCCceEEEecccccCCCCccCCC
Q 004763 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK--------RM-CTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 87 AAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k--------Rl-g~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
-|-|.-...+|..+.. .-.|+++|+++.+++.|..-.. ++ ...++.++.. .
T Consensus 12 IGlGyvGlpmA~~la~--------~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~-~----------- 71 (425)
T PRK15182 12 IGLGYVGLPLAVEFGK--------SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSE-I----------- 71 (425)
T ss_pred ECcCcchHHHHHHHhc--------CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeC-H-----------
Confidence 3778888888887753 2579999999999988762211 00 0001111110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (732)
..-...|.|++=+|=.-+.. ..++ +..+ ........+.|++|..+ .-..|
T Consensus 72 --------------~~~~~advvii~Vptp~~~~--~~~d------------l~~v-~~a~~~i~~~l~~g~lV-I~~ST 121 (425)
T PRK15182 72 --------------EKIKECNFYIITVPTPINTY--KQPD------------LTPL-IKASETVGTVLNRGDIV-VYEST 121 (425)
T ss_pred --------------HHHcCCCEEEEEcCCCCCCC--CCcc------------hHHH-HHHHHHHHHhcCCCCEE-EEecC
Confidence 01135688887555111110 0122 1111 11233445677886554 44578
Q ss_pred CCCcCcHHHHHHHHHHC
Q 004763 238 MNPVENEAVVAEILRKC 254 (732)
Q Consensus 238 lnp~ENEaVV~~~L~~~ 254 (732)
+.|...+.++...+++.
T Consensus 122 v~pgtt~~~~~~~l~~~ 138 (425)
T PRK15182 122 VYPGCTEEECVPILARM 138 (425)
T ss_pred CCCcchHHHHHHHHHhc
Confidence 99999999999998863
No 355
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=45.85 E-value=26 Score=36.34 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=29.6
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~ 131 (732)
++.+++|.+||.|+.+..+... ...|++||++..-..+.+..+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-----------~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-----------GKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC--------------SSEEEEEES-HHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-----------ccceeeeechHHHHHHHHHHH
Confidence 6889999999999988776542 478999999988665554333
No 356
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=45.19 E-value=1.3e+02 Score=33.32 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCEEEeecCCCChHHHHHHHHHhc----C--CCC-CCCCCeEEEEEeCCH
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQ----S--TNP-GALPNGMVIANDLDV 121 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~----~--~~~-~~~p~G~VvAnDid~ 121 (732)
--+|+|++|+.|.-|+.++..+-. . ... ...|.-.|+-||.-.
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~ 66 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPS 66 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TT
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCC
Confidence 358999999999999887654421 1 000 123456899999843
No 357
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.80 E-value=1.5e+02 Score=32.16 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=32.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.+ .|+....++++... .+...|++.|.+.+|..++. .+|..
T Consensus 162 ~~~~~g~~vlI~g--~g~iG~~~~~lak~------~G~~~v~~~~~~~~~~~~~~----~~g~~ 213 (351)
T cd08285 162 ANIKLGDTVAVFG--IGPVGLMAVAGARL------RGAGRIIAVGSRPNRVELAK----EYGAT 213 (351)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHH------cCCCeEEEEeCCHHHHHHHH----HcCCc
Confidence 3567899998874 35544333333322 11246999999999887654 46653
No 358
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.80 E-value=1.9e+02 Score=29.91 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=64.7
Q ss_pred CCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
|..||=.+|+. ++....+++.|... ...|+..+.+. +.. ..++.+....+.+...|..+...+. .
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~-------G~~Vi~~~r~~-~~~---~~~~~~~~~~~~~~~~Dl~~~~~v~--~- 72 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ-------GATVIYTYQND-RMK---KSLQKLVDEEDLLVECDVASDESIE--R- 72 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC-------CCEEEEecCch-HHH---HHHHhhccCceeEEeCCCCCHHHHH--H-
Confidence 67888888875 67888888888652 34788887763 332 2233332234455556654421110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Cccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtlr-k~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
...........+|.++..+--... +.+. ..++-|.+- -...+ .-...+++.++.+++.+|+||
T Consensus 73 --------~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~---~~in~-~~~~~l~~~~~~~~~~~g~Iv 140 (252)
T PRK06079 73 --------AFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALA---QDISA-YSLIAVAKYARPLLNPGASIV 140 (252)
T ss_pred --------HHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHH---hCccc-HHHHHHHHHHHHhcccCceEE
Confidence 000011122568988876522110 1111 122223321 11111 122345566667777789888
Q ss_pred EEc
Q 004763 233 YST 235 (732)
Q Consensus 233 YST 235 (732)
+.+
T Consensus 141 ~is 143 (252)
T PRK06079 141 TLT 143 (252)
T ss_pred EEe
Confidence 754
No 359
>PRK06914 short chain dehydrogenase; Provisional
Probab=44.59 E-value=1.5e+02 Score=30.80 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=40.5
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~ 148 (732)
.|| ++.|.|+....++..+... .-.|++.+.+...+..+.+.++..+. .++.+...|..+
T Consensus 5 ~~l-ItGasg~iG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 5 IAI-VTGASSGFGLLTTLELAKK-------GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred EEE-EECCCchHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC
Confidence 344 4456777788888877652 24789999998888777766655543 356666677655
No 360
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=43.93 E-value=1.8e+02 Score=33.09 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCEEEeecCCCChHHHHHHHH----HhcCCC--CCCCCCeEEEEEeCCHHHHHHHHHH
Q 004763 79 DHFVLDMCAAPGSKTFQLLEI----IHQSTN--PGALPNGMVIANDLDVQRCNLLIHQ 130 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~----l~~~~~--~~~~p~G~VvAnDid~~Rl~~L~~n 130 (732)
.-.|+|++||+|.-|+.++.. ++.... ....|.-.|+-||.-..=...|-..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~ 121 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQL 121 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhh
Confidence 568999999999888776443 332111 0112456788888754444444333
No 361
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=43.77 E-value=1.9e+02 Score=29.47 Aligned_cols=63 Identities=8% Similarity=-0.004 Sum_probs=43.5
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da 146 (732)
..++..||=.+ |.|+....++..|... ...|++.+.+......+...++..+...+.+...|.
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~-------G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~ 71 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARH-------GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDL 71 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHC-------CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 34566777666 5677888888877642 348999999998887777777766654555544444
No 362
>PRK07576 short chain dehydrogenase; Provisional
Probab=43.76 E-value=2.4e+02 Score=29.30 Aligned_cols=62 Identities=5% Similarity=0.074 Sum_probs=40.4
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
++.+||=.+ |.|+....++..+... ...|++.+.+...+..+...+...+. .+.+...|..+
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARA-------GANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRD 69 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCC
Confidence 466777666 5677788888777642 34799999988877666555554432 34555566544
No 363
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=43.74 E-value=3.4e+02 Score=27.40 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=37.8
Q ss_pred cCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 86 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 86 CAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.-|.|+....++..+... ...|++.+.+..+...+...++..+ .++.+...|..+
T Consensus 7 tGa~g~lG~~l~~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (255)
T TIGR01963 7 TGAASGIGLAIALALAAA-------GANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTK 61 (255)
T ss_pred cCCcchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 346688888888877542 3479999999888887777665544 345666666554
No 364
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.59 E-value=2.1e+02 Score=30.28 Aligned_cols=133 Identities=9% Similarity=0.074 Sum_probs=65.2
Q ss_pred CCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
+..||=.+|+. ++....++..+... ...|+..+.+.+....+....+.++.. .+...|..+...+.-
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~-------G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~--- 72 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQ-------GAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKS--- 72 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHC-------CCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHH---
Confidence 56777777764 67888888877652 347787888753223333333344432 334456554322110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCC----CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSG----DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG----dGtlr-k~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
...........+|.++..+--.. .+.+. ..++.|.+- -..++.. ...+.+.++.+++.+|+||
T Consensus 73 --------~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~---~~vN~~g-~~~l~~~~~p~m~~~g~Iv 140 (274)
T PRK08415 73 --------LAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIA---MEISVYS-LIELTRALLPLLNDGASVL 140 (274)
T ss_pred --------HHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHH---hhhhhHH-HHHHHHHHHHHhccCCcEE
Confidence 00001112356898887553211 01111 122333321 1111111 2345666777777789998
Q ss_pred EEc
Q 004763 233 YST 235 (732)
Q Consensus 233 YST 235 (732)
+.+
T Consensus 141 ~is 143 (274)
T PRK08415 141 TLS 143 (274)
T ss_pred EEe
Confidence 764
No 365
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=43.28 E-value=2.4e+02 Score=28.87 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=42.2
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.|.+||=.+ |.|+....++..+... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA-------GAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTD 70 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCC
Confidence 356777555 6788888888887652 34789999998888777776665542 34555556544
No 366
>PRK06701 short chain dehydrogenase; Provisional
Probab=43.27 E-value=1.6e+02 Score=31.34 Aligned_cols=132 Identities=9% Similarity=0.046 Sum_probs=65.4
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEecccccCCCCccCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~-~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~ 156 (732)
.+.+||=.+ |.|+....++..+... ...|+.++.+. .....+...++..+ .++.+...|..+...+..
T Consensus 45 ~~k~iLItG-asggIG~~la~~l~~~-------G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~-- 113 (290)
T PRK06701 45 KGKVALITG-GDSGIGRAVAVLFAKE-------GADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKD-- 113 (290)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHH--
Confidence 356777666 4666778888777642 34677777764 34444444444333 245566666654221100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCcccc-----ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004763 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-----APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-----~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (732)
. ..........+|.|+..+ |.+.... ..+.|... -... ..--..+++.++..++++|+|
T Consensus 114 ~---------~~~i~~~~~~iD~lI~~A---g~~~~~~~~~~~~~~~~~~~---~~~N-~~~~~~l~~a~~~~~~~~g~i 177 (290)
T PRK06701 114 A---------VEETVRELGRLDILVNNA---AFQYPQQSLEDITAEQLDKT---FKTN-IYSYFHMTKAALPHLKQGSAI 177 (290)
T ss_pred H---------HHHHHHHcCCCCEEEECC---cccCCCCCcccCCHHHHHHH---Hhhh-hHHHHHHHHHHHHHHhhCCeE
Confidence 0 000001123678888744 3322111 11122211 1111 123345666677777788999
Q ss_pred EEEcC
Q 004763 232 VYSTC 236 (732)
Q Consensus 232 VYSTC 236 (732)
||.+-
T Consensus 178 V~isS 182 (290)
T PRK06701 178 INTGS 182 (290)
T ss_pred EEEec
Confidence 98653
No 367
>PRK05867 short chain dehydrogenase; Provisional
Probab=43.18 E-value=2.1e+02 Score=29.30 Aligned_cols=61 Identities=7% Similarity=-0.032 Sum_probs=41.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
|..||=.+| .|+....++..|... ...|+..+.+.+++..+...++..+ .++.+...|..+
T Consensus 9 ~k~vlVtGa-s~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (253)
T PRK05867 9 GKRALITGA-STGIGKRVALAYVEA-------GAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ 69 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 567776665 567778888877652 3478999999988888877776554 345555556544
No 368
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=43.01 E-value=2.3e+02 Score=29.01 Aligned_cols=61 Identities=7% Similarity=0.124 Sum_probs=41.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|+....++..+... ...|+..+.+..+...+...+++.+. .+.+...|..+
T Consensus 11 ~k~vlVtG-~s~gIG~~la~~l~~~-------G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 71 (255)
T PRK06113 11 GKCAIITG-AGAGIGKEIAITFATA-------GASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITS 71 (255)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 66777777 5566777888877652 34688888888888877777665543 35555666654
No 369
>PRK06949 short chain dehydrogenase; Provisional
Probab=42.92 E-value=3.6e+02 Score=27.34 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|+...+++..+... .-.|++.+.+.+++..+...+...+. ++.+...|...
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~-------G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 69 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQA-------GAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTD 69 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 56666555 6778888888887652 23799999999998877776654432 35555566544
No 370
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=42.63 E-value=2.8e+02 Score=31.34 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=25.4
Q ss_pred HHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHC
Q 004763 219 MRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (732)
Q Consensus 219 ~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~ 254 (732)
....+.+++|-.+|.+ .|+.|...+.+...++++.
T Consensus 104 ~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~~ 138 (411)
T TIGR03026 104 ETIAKHLRKGATVVLE-STVPPGTTEEVVKPILERA 138 (411)
T ss_pred HHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHhh
Confidence 3344567887666664 4888899999988888763
No 371
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=41.62 E-value=1.4e+02 Score=32.98 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=28.4
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
+++|++||=.+| |+....++++.... ...|++.+.+..+...+ ++++|..
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~~-------Ga~vi~~~~~~~~~~~~---~~~~Ga~ 230 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKAF-------GLKVTVISSSSNKEDEA---INRLGAD 230 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHC-------CCEEEEEeCCcchhhhH---HHhCCCc
Confidence 578999988654 55544444433321 24578887776554322 3457764
No 372
>PRK12829 short chain dehydrogenase; Provisional
Probab=41.06 E-value=1.1e+02 Score=31.29 Aligned_cols=61 Identities=10% Similarity=-0.016 Sum_probs=41.1
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
-++.+||=.+| .|+...+++..|... ...|++++.+..+...+.+...+. ++.+...|..+
T Consensus 9 ~~~~~vlItGa-~g~iG~~~a~~L~~~-------g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGG-ASGIGRAIAEAFAEA-------GARVHVCDVSEAALAATAARLPGA---KVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCC-CCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCC
Confidence 36778887775 488888888887652 347899999887776655443222 45566666654
No 373
>PRK07102 short chain dehydrogenase; Provisional
Probab=40.85 E-value=2.3e+02 Score=28.73 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=41.0
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+|| +..|+|+....++..+... ...|++.+.+..+...+...+...+..++.+...|..+
T Consensus 3 ~vl-ItGas~giG~~~a~~l~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 3 KIL-IIGATSDIARACARRYAAA-------GARLYLAARDVERLERLADDLRARGAVAVSTHELDILD 62 (243)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 455 3446788888888887652 34799999999887766655544444567777777665
No 374
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=40.74 E-value=1.7e+02 Score=30.04 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=37.8
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+||=.+| .|+....++..+... ...|+..+.+..++..+...++..+ .+.+...|..+
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKK-------GARVVISSRNEENLEKALKELKEYG--EVYAVKADLSD 59 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCC
Confidence 4554554 466778888877652 3578899999888877776665443 34555555543
No 375
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=40.44 E-value=2.7e+02 Score=28.46 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=40.7
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..||=.+ |.|+....++..|... ...|+..+.+..++..+.+.++..+. .+.+...|..+
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~-------G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 69 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEY-------GAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTH 69 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCC
Confidence 44565555 6678888888888652 34788999998888777777665542 34445556544
No 376
>PRK07063 short chain dehydrogenase; Provisional
Probab=40.42 E-value=2.1e+02 Score=29.40 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=41.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~ 148 (732)
+.+||=.+| .|+....++..+... ...|+..+.+..++..+.+.+...+ ..++.+...|..+
T Consensus 7 ~k~vlVtGa-s~gIG~~~a~~l~~~-------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTGA-AQGIGAAIARAFARE-------GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence 556775554 577788888877652 3578999999988888777765521 2345566666554
No 377
>PRK07832 short chain dehydrogenase; Provisional
Probab=40.42 E-value=1.4e+02 Score=31.09 Aligned_cols=55 Identities=5% Similarity=-0.049 Sum_probs=35.2
Q ss_pred cCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004763 86 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (732)
Q Consensus 86 CAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~ 147 (732)
.-|.|+....+++.+... ...|+..+.+...+..+...++..+...+.+...|..
T Consensus 6 tGas~giG~~la~~la~~-------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (272)
T PRK07832 6 TGAASGIGRATALRLAAQ-------GAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60 (272)
T ss_pred eCCCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC
Confidence 345678888888877642 3468888988887777766666555433333445544
No 378
>PRK07478 short chain dehydrogenase; Provisional
Probab=40.20 E-value=2.7e+02 Score=28.41 Aligned_cols=61 Identities=5% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..|| +.-|.|+....++..+... ...|+..+.+...+..+...++..+. ++.+...|..+
T Consensus 6 ~k~~l-ItGas~giG~~ia~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 66 (254)
T PRK07478 6 GKVAI-ITGASSGIGRAAAKLFARE-------GAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRD 66 (254)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 44566 4455677788888877652 34788899999888888777766553 45555566544
No 379
>PLN02702 L-idonate 5-dehydrogenase
Probab=40.09 E-value=2.3e+02 Score=30.83 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=32.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
..+.+|.+||=.+ .|+....++++.... +...|++.|.+..|..++. .+|.+.
T Consensus 177 ~~~~~g~~vlI~g--~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~~~ 229 (364)
T PLN02702 177 ANIGPETNVLVMG--AGPIGLVTMLAARAF------GAPRIVIVDVDDERLSVAK----QLGADE 229 (364)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HhCCCE
Confidence 4678899998883 455443333333321 1235889999988877543 466543
No 380
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.82 E-value=2.2e+02 Score=28.75 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=38.4
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=. .|.|+...+++..+... .-.|++.+.+..++..+...+.. + .++.+...|..+
T Consensus 5 ~~~vlIt-Gasg~iG~~l~~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~ 64 (251)
T PRK07231 5 GKVAIVT-GASSGIGEGIARRFAAE-------GARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSD 64 (251)
T ss_pred CcEEEEE-CCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCC
Confidence 3455544 45677788888877642 23699999999888777665543 2 235555566544
No 381
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=39.64 E-value=2.5e+02 Score=28.45 Aligned_cols=55 Identities=7% Similarity=0.043 Sum_probs=36.7
Q ss_pred cCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 86 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 86 CAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
..|.|+....++..|... .-.|+.++.+..++..+.+.+...+. ++.+...|..+
T Consensus 6 tG~sg~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 60 (254)
T TIGR02415 6 TGGAQGIGKGIAERLAKD-------GFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSD 60 (254)
T ss_pred eCCCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 346788888888887652 34788899988887777666655442 35555566544
No 382
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=39.13 E-value=2.8e+02 Score=29.42 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=28.9
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
..++++..||=. |.|+....++++.... ...|++.+.+..+...+
T Consensus 163 ~~~~~~~~vlV~--g~g~vg~~~~~la~~~-------g~~v~~~~~~~~~~~~~ 207 (329)
T cd08298 163 AGLKPGQRLGLY--GFGASAHLALQIARYQ-------GAEVFAFTRSGEHQELA 207 (329)
T ss_pred hCCCCCCEEEEE--CCcHHHHHHHHHHHHC-------CCeEEEEcCChHHHHHH
Confidence 456788888876 4566554444444431 35788888888777655
No 383
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=38.88 E-value=1.7e+02 Score=31.54 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=30.6
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
.++++|.+||=.+ .|+....++++.... +...|++.+.+.++...+.
T Consensus 168 ~~~~~g~~vlI~g--~g~vG~~a~q~a~~~------G~~~v~~~~~~~~~~~~~~ 214 (351)
T cd08233 168 SGFKPGDTALVLG--AGPIGLLTILALKAA------GASKIIVSEPSEARRELAE 214 (351)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH
Confidence 4678899888774 366555544444431 1237899999999887663
No 384
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=38.68 E-value=62 Score=33.98 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHHhhccCCCE-----EEEE---cCC-CCCcCcHHHHHHHHHHCC
Q 004763 215 VQIAMRGISLLKVGGR-----IVYS---TCS-MNPVENEAVVAEILRKCE 255 (732)
Q Consensus 215 ~~IL~rAl~lLKpGGr-----LVYS---TCS-lnp~ENEaVV~~~L~~~~ 255 (732)
-++|+++.++|+++|. |... .|- -+.-=++....+++...|
T Consensus 124 G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LG 173 (219)
T PF11968_consen 124 GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLG 173 (219)
T ss_pred HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCC
Confidence 3789999999999999 4433 232 123344566666676654
No 385
>PRK08265 short chain dehydrogenase; Provisional
Probab=38.50 E-value=2.6e+02 Score=28.86 Aligned_cols=58 Identities=5% Similarity=0.002 Sum_probs=36.3
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|+....++..+... ...|+..|.+...+..+... ++ ..+.+...|..+
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~ 63 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAA-------GARVAIVDIDADNGAAVAAS---LG-ERARFIATDITD 63 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHH---hC-CeeEEEEecCCC
Confidence 45666454 5677788888877652 34889999988766555443 33 235555666554
No 386
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.41 E-value=2.5e+02 Score=29.46 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=35.2
Q ss_pred CCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..+|=.+|+. ++....++..|... ...|+..+.+......+....+.++. ......|..+
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~-------Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d 68 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQ-------GAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVED 68 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhC-------CCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCC
Confidence 66788888876 47778888877652 34677777765443333333333442 1234455544
No 387
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=38.35 E-value=1e+02 Score=33.14 Aligned_cols=42 Identities=21% Similarity=0.179 Sum_probs=25.6
Q ss_pred CCCCCCEEEeecCCCChH---HHHHHHHHhcCCCCCCCCCe-EEEEEeCCHHHHHHHH
Q 004763 75 DVQPDHFVLDMCAAPGSK---TFQLLEIIHQSTNPGALPNG-MVIANDLDVQRCNLLI 128 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsK---T~qLae~l~~~~~~~~~p~G-~VvAnDid~~Rl~~L~ 128 (732)
..++|++||-.++ |+. ++++|..+ .. .|++.+.+.+|..++.
T Consensus 160 ~~~~g~~vlV~g~--g~vg~~~~~la~~~----------G~~~v~~~~~~~~~~~~~~ 205 (341)
T cd05281 160 GDVSGKSVLITGC--GPIGLMAIAVAKAA----------GASLVIASDPNPYRLELAK 205 (341)
T ss_pred cCCCCCEEEEECC--CHHHHHHHHHHHHc----------CCcEEEEECCCHHHHHHHH
Confidence 3468888888543 443 44444442 23 5777788888876554
No 388
>PRK06139 short chain dehydrogenase; Provisional
Probab=37.81 E-value=2.9e+02 Score=30.23 Aligned_cols=61 Identities=8% Similarity=0.141 Sum_probs=42.5
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..|| +.-|+|+....++..+... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 7 ~k~vl-ITGAs~GIG~aia~~la~~-------G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d 67 (330)
T PRK06139 7 GAVVV-ITGASSGIGQATAEAFARR-------GARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTD 67 (330)
T ss_pred CCEEE-EcCCCCHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCC
Confidence 44555 5556778888888877652 35789999999999888888776664 34445555543
No 389
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=37.53 E-value=3e+02 Score=29.89 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
++|.+||=.+ .|+....+++++... +.+.|++.+.+.+|...+ +.+|...
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~------G~~~v~~~~~~~~~~~~~----~~~g~~~ 225 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLA------GARRVIVIDGSPERLELA----REFGADA 225 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHH----HHcCCCe
Confidence 5888888873 466665555554431 123799999998887755 3567643
No 390
>PRK06197 short chain dehydrogenase; Provisional
Probab=37.39 E-value=3.4e+02 Score=28.78 Aligned_cols=64 Identities=5% Similarity=0.080 Sum_probs=41.6
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEecccccC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQHF 149 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl-g~~ni~Vt~~Da~~f 149 (732)
.+.+|| +.-|.|+...+++..|... ...|+..+.+..+...+.+.+... +-..+.+...|..+.
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~-------G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAK-------GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSL 79 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCH
Confidence 355666 5556788889999887752 247888888888776665555432 223455666666553
No 391
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=37.36 E-value=1.5e+02 Score=32.97 Aligned_cols=48 Identities=8% Similarity=-0.072 Sum_probs=27.5
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHH-HHHHHHHHHHcCCC
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR-CNLLIHQTKRMCTA 137 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R-l~~L~~n~kRlg~~ 137 (732)
++|++||=.++ |+....++++.... ...|++.+.+..+ ... ++.+|..
T Consensus 177 ~~g~~VlV~G~--G~vG~~avq~Ak~~-------Ga~Vi~~~~~~~~~~~~----a~~lGa~ 225 (375)
T PLN02178 177 ESGKRLGVNGL--GGLGHIAVKIGKAF-------GLRVTVISRSSEKEREA----IDRLGAD 225 (375)
T ss_pred CCCCEEEEEcc--cHHHHHHHHHHHHc-------CCeEEEEeCChHHhHHH----HHhCCCc
Confidence 58999987654 55544444433321 2358888876543 333 3457764
No 392
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=37.31 E-value=63 Score=30.51 Aligned_cols=40 Identities=30% Similarity=0.245 Sum_probs=26.2
Q ss_pred eecCCCC--hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004763 84 DMCAAPG--SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (732)
Q Consensus 84 DmCAAPG--sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n 130 (732)
|++|.-| +.+..++.... .+.+.|+|+|.++..+..|..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~-------~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKC-------GPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHT-------S--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHc-------CCCCEEEEEECCHHHHHHHhHH
Confidence 8899999 66666543211 2478999999999999999988
No 393
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=37.09 E-value=1.4e+02 Score=34.33 Aligned_cols=42 Identities=14% Similarity=-0.048 Sum_probs=28.6
Q ss_pred CCCCEEEeecCCCChH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 77 QPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
-+|++|+=+++||=|. +++++..+ ...|+++|+++.|+..+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~----------Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ----------GARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC----------CCEEEEEECChhhHHHHH
Confidence 4789999888887443 33333332 247899999999976543
No 394
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=36.89 E-value=1.4e+02 Score=31.91 Aligned_cols=45 Identities=27% Similarity=0.286 Sum_probs=28.7
Q ss_pred hcCCCCCCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
...+++|.+||-..++. |.-++++|..+ ...|++...+.++...+
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~----------g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR----------GARVIVVDIDDERLEFA 199 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc----------CCeEEEECCCHHHHHHH
Confidence 34678999999984321 22344444443 35688888888877766
No 395
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.84 E-value=64 Score=35.32 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=44.0
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccccchhhh
Q 004763 215 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHV 294 (732)
Q Consensus 215 ~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L~~~~~~velvd~s~~lP~L~~~pGl~~W~v~~~~~~~~~~~~~ 294 (732)
.+.|..|..+|++||+|+.- |++..|+-- |..+++.+.... + ..-..|+...+....+|.+|+
T Consensus 216 ~~~L~~~~~~L~~gGrl~vi--sfHSlEDri-VK~~f~~~~~~~---------~-----~~~~~~~~~~~k~i~ps~~Ei 278 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVI--SFHSLEDRI-VKRFFRELSKGC---------C-----GNKPKLKLLTKKPIKPSEEEI 278 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHHH-HHHHHHHhcccc---------c-----ccCCceEEcCCCCcCCCHHHH
Confidence 56789999999999999864 666667654 466666543110 0 001236665555567788888
Q ss_pred hhhhcc
Q 004763 295 RKFRRI 300 (732)
Q Consensus 295 ~~~~~~ 300 (732)
..+.|+
T Consensus 279 ~~NpRs 284 (296)
T PRK00050 279 AANPRA 284 (296)
T ss_pred HhCcch
Confidence 766553
No 396
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=36.70 E-value=61 Score=35.03 Aligned_cols=93 Identities=25% Similarity=0.356 Sum_probs=53.9
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc-CCCEEEEEcCCCCCcCcH---------
Q 004763 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK-VGGRIVYSTCSMNPVENE--------- 244 (732)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLK-pGGrLVYSTCSlnp~ENE--------- 244 (732)
...+.|++|=|-||.--. -.++|+.++.-+| .|-+|+|||--|...|--
T Consensus 147 HePeLlILDEPFSGLDPV---------------------N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~k 205 (300)
T COG4152 147 HEPELLILDEPFSGLDPV---------------------NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKK 205 (300)
T ss_pred cCCCEEEecCCccCCChh---------------------hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecC
Confidence 357899999999985422 1345555544444 355666665555222210
Q ss_pred ------HHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccc
Q 004763 245 ------AVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWL 288 (732)
Q Consensus 245 ------aVV~~~L~~~~~~velvd~s~~lP~L~~~pGl~~W~v~~~~~~~ 288 (732)
.-|..+-+.++...-+++-...++.|...||+..|.-...|.|+
T Consensus 206 G~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~~ipgi~~~~~~~~G~~~ 255 (300)
T COG4152 206 GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWR 255 (300)
T ss_pred CceEEeccHHHHHHhcCCceEEEeccCchHHHhcCCCceeeeeccCCceE
Confidence 11233334455555566655566677788999988765556664
No 397
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.39 E-value=3.1e+02 Score=28.53 Aligned_cols=50 Identities=18% Similarity=0.022 Sum_probs=29.1
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+|+.||=.++ +|+....++++.... ...|++.+.+.++...+. .+|..
T Consensus 130 ~~~~~~vli~g~-~~~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~~----~~g~~ 179 (305)
T cd08270 130 PLLGRRVLVTGA-SGGVGRFAVQLAALA-------GAHVVAVVGSPARAEGLR----ELGAA 179 (305)
T ss_pred CCCCCEEEEECC-CcHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHH----HcCCc
Confidence 345888875544 444444444443321 246888888888877664 35654
No 398
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=36.30 E-value=2.3e+02 Score=31.25 Aligned_cols=111 Identities=15% Similarity=0.069 Sum_probs=59.7
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
.+++|+.||=. |.|+....+++..... +...|++.|.+..+..++. .+|. .. ++.....+.. .+
T Consensus 173 ~~~~g~~vlI~--g~g~vg~~~~~~a~~~------G~~~vi~~~~~~~~~~~~~----~~g~-~~--v~~~~~~~~~-~i 236 (375)
T cd08282 173 GVQPGDTVAVF--GAGPVGLMAAYSAILR------GASRVYVVDHVPERLDLAE----SIGA-IP--IDFSDGDPVE-QI 236 (375)
T ss_pred CCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCC-eE--eccCcccHHH-HH
Confidence 46789999884 3466544444444321 1126888999998887664 3554 21 1111111000 00
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
.......+|.|+- |+|....+++..+|. ...+..++++|+++|+++.
T Consensus 237 ---------------~~~~~~~~d~v~d---~~g~~~~~~~~~~~~--------------~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 237 ---------------LGLEPGGVDRAVD---CVGYEARDRGGEAQP--------------NLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred ---------------HHhhCCCCCEEEE---CCCCcccccccccch--------------HHHHHHHHHHhhcCcEEEE
Confidence 0001135788864 777555444433222 1236677899999999863
No 399
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=36.14 E-value=83 Score=36.02 Aligned_cols=123 Identities=19% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc-------cCCCCccCCCCCC
Q 004763 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ-------HFPGCRANKNFSS 160 (732)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~-------~fp~~~~~~~~~~ 160 (732)
|-|...+-+|.+.... .-.|+++|++++++..+.. |. ..+..-+.. .-..++.+.+.
T Consensus 16 GLGYVGLPlA~~fA~~-------G~~ViG~DIn~~~Vd~ln~-----G~--~~i~e~~~~~~v~~~v~~g~lraTtd~-- 79 (436)
T COG0677 16 GLGYVGLPLAAAFASA-------GFKVIGVDINQKKVDKLNR-----GE--SYIEEPDLDEVVKEAVESGKLRATTDP-- 79 (436)
T ss_pred ccccccHHHHHHHHHc-------CCceEeEeCCHHHHHHHhC-----Cc--ceeecCcHHHHHHHHHhcCCceEecCh--
Confidence 6677777777776542 3589999999999987643 21 111111111 10111111000
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCC
Q 004763 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSlnp 240 (732)
..-..-|.+++=||---++ .+.||+ ..-....+.-...|++|-.+|+ --|..|
T Consensus 80 -----------~~l~~~dv~iI~VPTPl~~--~~~pDl-------------s~v~~aa~sIa~~L~kG~LVIl-EST~~P 132 (436)
T COG0677 80 -----------EELKECDVFIICVPTPLKK--YREPDL-------------SYVESAARSIAPVLKKGDLVIL-ESTTPP 132 (436)
T ss_pred -----------hhcccCCEEEEEecCCcCC--CCCCCh-------------HHHHHHHHHHHHhcCCCCEEEE-ecCCCC
Confidence 0012567666655433233 256765 1123345556678999776666 467889
Q ss_pred cCcHHHHHHHHHH
Q 004763 241 VENEAVVAEILRK 253 (732)
Q Consensus 241 ~ENEaVV~~~L~~ 253 (732)
--.|.++..+|+.
T Consensus 133 GTTe~v~~plle~ 145 (436)
T COG0677 133 GTTEEVVKPLLEE 145 (436)
T ss_pred CcHHHHHHHHHhh
Confidence 9999999999987
No 400
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=36.12 E-value=49 Score=38.67 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCcCcHHHHHHHH
Q 004763 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 251 (732)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSlnp~ENEaVV~~~L 251 (732)
...||...=+.|+|||.++.- ++.+|+..+-
T Consensus 446 ~~~illEmDRILRP~G~~iiR-------D~~~vl~~v~ 476 (506)
T PF03141_consen 446 MEDILLEMDRILRPGGWVIIR-------DTVDVLEKVK 476 (506)
T ss_pred HHHHHHHhHhhcCCCceEEEe-------ccHHHHHHHH
Confidence 357888889999999999874 5555655544
No 401
>KOG3492 consensus Ribosome biogenesis protein NIP7 [Translation, ribosomal structure and biogenesis]
Probab=35.57 E-value=1.2e+02 Score=30.29 Aligned_cols=121 Identities=20% Similarity=0.361 Sum_probs=73.1
Q ss_pred hhhHHHHHhhhcCCCCCCCCCceEeecCCC----CcceEEEEeCHHHHHHHHhccCCCCccEEEEceEeeEEEecCCCCC
Q 004763 502 ETIINSIKTFYGIDDSFQLSGQLVSRNGDT----NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGN 577 (732)
Q Consensus 502 ~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~----~~~k~iy~~s~~v~~il~~n~~~g~~lkii~~GvK~F~rq~~~~~~ 577 (732)
..+++.+..|-|=+-+ +|+.|.... ..+.++||+|+-+.+.- .+. .+=++++.|. .|.|-. |
T Consensus 10 k~vfekla~yIG~Nv~-----~lidr~D~~~cfrlhkdRVyyvsEr~~k~a-~~i---sr~~L~s~Gt-c~GKFT-K--- 75 (180)
T KOG3492|consen 10 KVVFEKLAKYIGDNVS-----HLIDRPDGTYCFRLHKDRVYYVSERIMKLA-ACI---SRKNLVSLGT-CFGKFT-K--- 75 (180)
T ss_pred HHHHHHHHHHHhhhhh-----eeecCCCCceeeEeeCceEEeehHHHHHHH-hhh---cccceeEEeE-EEeeee-c---
Confidence 3568889988886533 333343321 24689999999999954 444 3567788886 344432 1
Q ss_pred CcccceeeccCchhhhhhcccCcE-EecCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEe
Q 004763 578 SAPCSFRISSEGLPVILPYITKQI-LYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 645 (732)
Q Consensus 578 ~~~c~~Ri~~eGl~~l~p~~~~r~-v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l~~G~~vl~~~ 645 (732)
.-.||+.--.|.+|.||-.-.+ |.-+.| +..|-- +..+..-++.--+++..+.-|+++.
T Consensus 76 --t~kfrlhitaL~~La~~Ak~KvWiKp~~E-m~flYG------NhvlKs~vgRitd~~p~~~GVvVys 135 (180)
T KOG3492|consen 76 --TGKFRLHITALDYLAPYAKYKVWIKPNAE-MQFLYG------NHVLKSGVGRITDGIPQHQGVVVYS 135 (180)
T ss_pred --cceEEEeeeehhhhhhhhheeEEeccCcc-cceeec------ccchhcccceecCCCCCcceEEEEe
Confidence 1489999999999999976444 444433 221111 1122223444445566677777766
No 402
>PRK09242 tropinone reductase; Provisional
Probab=35.44 E-value=2.9e+02 Score=28.27 Aligned_cols=62 Identities=6% Similarity=-0.078 Sum_probs=40.5
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~ 148 (732)
|..+|=.+| .|+....++..+... .-.|++.+.+..++..+..+++... ...+.+...|..+
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGL-------GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 556666654 567778888877652 3478999999888877766665441 2345555666544
No 403
>PRK07831 short chain dehydrogenase; Provisional
Probab=35.15 E-value=4.4e+02 Score=26.98 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=42.1
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeccccc
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQH 148 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR-lg~~ni~Vt~~Da~~ 148 (732)
..+.+||=.+++..+....++..+... ...|+..|.+..++......++. ++..++.+...|..+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEE-------GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS 80 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 346777777665225677777776542 24688899998888777666654 443456666666654
No 404
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.07 E-value=2.9e+02 Score=28.67 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=22.5
Q ss_pred CCEEEeecCCCC-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH
Q 004763 79 DHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (732)
Q Consensus 79 g~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid~ 121 (732)
|..+|=.+|+.| +....+++.+... ...|+..+.+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~-------G~~v~~~~r~~ 44 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKH-------GAELWFTYQSE 44 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHc-------CCEEEEEeCch
Confidence 556676666654 6777777776542 23677777664
No 405
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.02 E-value=3.5e+02 Score=27.09 Aligned_cols=60 Identities=7% Similarity=0.021 Sum_probs=39.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+| +|+....+++.+... .-.|++.+.+..++..+...+...+ ++.+...|..+
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKE-------GAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCC
Confidence 557776665 577888888877642 3479999999888877655554332 45555565543
No 406
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=34.97 E-value=4.3e+02 Score=26.52 Aligned_cols=61 Identities=8% Similarity=-0.025 Sum_probs=40.0
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|+....++..+... ...|++.+.+..+...+...+...+ .++.+...|..+
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 66 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAAD-------GAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRD 66 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 45677444 5678888888877642 2479999999887776666655443 345566666544
No 407
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=34.95 E-value=2.4e+02 Score=31.15 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=34.1
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
..+++|++||=. |.|+....++++.... +...|++.+.+..|..++. .+|...
T Consensus 199 ~~~~~g~~VlV~--g~g~vG~~ai~lA~~~------G~~~vi~~~~~~~~~~~~~----~~g~~~ 251 (384)
T cd08265 199 GGFRPGAYVVVY--GAGPIGLAAIALAKAA------GASKVIAFEISEERRNLAK----EMGADY 251 (384)
T ss_pred CCCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHH----HcCCCE
Confidence 367889999876 3577666555554431 1226999999888765543 466543
No 408
>PRK07454 short chain dehydrogenase; Provisional
Probab=34.89 E-value=2.6e+02 Score=28.16 Aligned_cols=61 Identities=5% Similarity=-0.153 Sum_probs=41.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|+....++..+... ...|++.+.+......+...++..+ .++.+...|..+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKA-------GWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCC
Confidence 34555555 5788888888888652 3479999999888777766665544 345566677665
No 409
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.31 E-value=4.3e+02 Score=26.54 Aligned_cols=61 Identities=5% Similarity=-0.057 Sum_probs=41.3
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..||=.+ |.|+...+++..+... ...|++.+.+..+...+...++..+ .++.+...|..+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKE-------GVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCC
Confidence 45666666 5788888888877642 3589999999888776666555443 246666666654
No 410
>PRK06172 short chain dehydrogenase; Provisional
Probab=33.54 E-value=3.1e+02 Score=27.86 Aligned_cols=61 Identities=7% Similarity=0.016 Sum_probs=42.5
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|+....++..+... ...|++.+.+.+++..+.+.++..+ .++.+...|..+
T Consensus 7 ~k~ilItG-as~~iG~~ia~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTG-GAAGIGRATALAFARE-------GAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTR 67 (253)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 45666666 4677778888777642 3479999999988887777776655 346666677654
No 411
>PRK06198 short chain dehydrogenase; Provisional
Probab=33.33 E-value=4e+02 Score=27.16 Aligned_cols=61 Identities=3% Similarity=0.080 Sum_probs=37.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM-VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~-VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +..|.|+...++++.+... ... |++.+.+......+...++..+ ..+.+...|..+
T Consensus 6 ~k~vl-ItGa~g~iG~~la~~l~~~-------G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 67 (260)
T PRK06198 6 GKVAL-VTGGTQGLGAAIARAFAER-------GAAGLVICGRNAEKGEAQAAELEALG-AKAVFVQADLSD 67 (260)
T ss_pred CcEEE-EeCCCchHHHHHHHHHHHC-------CCCeEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 45666 4456788888888887642 234 8899988776665555554333 234445555544
No 412
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=32.80 E-value=2.6e+02 Score=30.60 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=33.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=. |+|+....++++.... +.-.|++.+.+..|...+. .+|..
T Consensus 179 ~~~~~g~~vlI~--g~g~vG~~a~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~~ 230 (365)
T cd05279 179 AKVTPGSTCAVF--GLGGVGLSVIMGCKAA------GASRIIAVDINKDKFEKAK----QLGAT 230 (365)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HhCCC
Confidence 467889999886 3466655554444321 1225889998898887763 46653
No 413
>PRK05650 short chain dehydrogenase; Provisional
Probab=31.91 E-value=4.6e+02 Score=27.06 Aligned_cols=59 Identities=5% Similarity=-0.022 Sum_probs=39.7
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+|| +..|.|+....++..+... .-.|++.+.+..++..+...++..+. ++.+...|..+
T Consensus 2 ~vl-VtGasggIG~~la~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVM-ITGAASGLGRAIALRWARE-------GWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRD 60 (270)
T ss_pred EEE-EecCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 344 3446778888888887652 34788999998888877776665543 35555666554
No 414
>PRK10083 putative oxidoreductase; Provisional
Probab=31.82 E-value=3.1e+02 Score=29.24 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=33.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.+ +|+....++++.... .+...|++.|.+.+|..++. .+|..
T Consensus 156 ~~~~~g~~vlI~g--~g~vG~~~~~~a~~~-----~G~~~v~~~~~~~~~~~~~~----~~Ga~ 208 (339)
T PRK10083 156 TGPTEQDVALIYG--AGPVGLTIVQVLKGV-----YNVKAVIVADRIDERLALAK----ESGAD 208 (339)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 4678999998876 355544444433310 01346889999999987654 46653
No 415
>PRK05876 short chain dehydrogenase; Provisional
Probab=31.80 E-value=5e+02 Score=27.23 Aligned_cols=61 Identities=7% Similarity=-0.004 Sum_probs=39.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
|..||=.+ |.|+....+++.|... .-.|+..|.+..++..+...++..+. .+.+...|..+
T Consensus 6 ~k~vlVTG-as~gIG~ala~~La~~-------G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d 66 (275)
T PRK05876 6 GRGAVITG-GASGIGLATGTEFARR-------GARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRH 66 (275)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCC
Confidence 55677555 4577788888887652 24688889998887776666654443 34455556554
No 416
>PRK07677 short chain dehydrogenase; Provisional
Probab=31.63 E-value=4.5e+02 Score=26.77 Aligned_cols=60 Identities=3% Similarity=0.050 Sum_probs=39.1
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.++|=.+ |.|+....++..+... ...|++.+.+..++..+...++..+ ..+.+...|...
T Consensus 2 k~~lItG-~s~giG~~ia~~l~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITG-GSSGMGKAMAKRFAEE-------GANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 4566444 4666777787777642 3479999999888877766665444 345566666543
No 417
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=30.72 E-value=2.8e+02 Score=29.61 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=30.7
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
..+++|.+||=. + .|+....+++++... .-..|++.+.+.+|...+.
T Consensus 163 ~~~~~~~~vlI~-g-~g~vg~~~~~~a~~~------g~~~v~~~~~~~~~~~~~~ 209 (344)
T cd08284 163 AQVRPGDTVAVI-G-CGPVGLCAVLSAQVL------GAARVFAVDPVPERLERAA 209 (344)
T ss_pred cCCccCCEEEEE-C-CcHHHHHHHHHHHHc------CCceEEEEcCCHHHHHHHH
Confidence 346788888876 3 577766666655541 1126889888888876543
No 418
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=30.44 E-value=6e+02 Score=25.87 Aligned_cols=61 Identities=7% Similarity=-0.016 Sum_probs=39.9
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEeccccc
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQH 148 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl-g~~ni~Vt~~Da~~ 148 (732)
..||=.+ |.|+...+++..+... .-.|+..|.+..+...+...++.. +...+.+...|..+
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~-------g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEE-------GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 3566556 5577888888887652 347899999988877766655432 22345666666554
No 419
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=30.32 E-value=3.7e+02 Score=32.70 Aligned_cols=62 Identities=6% Similarity=0.157 Sum_probs=41.3
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR-lg~~ni~Vt~~Da~~ 148 (732)
+.+|| +..|.|+....++..|... ...|++.|.+..++..+...+.. .+...+.....|..+
T Consensus 414 gkvvL-VTGasggIG~aiA~~La~~-------Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd 476 (676)
T TIGR02632 414 RRVAF-VTGGAGGIGRETARRLAAE-------GAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD 476 (676)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 55666 5556688888888887652 35899999998888776655542 343345556666554
No 420
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=30.24 E-value=3.4e+02 Score=29.85 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=32.8
Q ss_pred cCCCCCCEEEeecCCCC--hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 74 LDVQPDHFVLDMCAAPG--SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPG--sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
..+++|++||=.+|+.| +.+.|||.+++ +.+++.-.+.+.... ++.+|...
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G----------~~~v~~~~s~~k~~~----~~~lGAd~ 190 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG----------ATVVAVVSSSEKLEL----LKELGADH 190 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC----------CcEEEEecCHHHHHH----HHhcCCCE
Confidence 35789999998776543 55677777642 266666666655543 45677654
No 421
>PRK07024 short chain dehydrogenase; Provisional
Probab=30.13 E-value=3.1e+02 Score=28.07 Aligned_cols=58 Identities=7% Similarity=0.005 Sum_probs=37.9
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+|| +.-|.|+...+++..|... .-.|+..+.+..++..+...+...+ ++.+...|..+
T Consensus 4 ~vl-ItGas~gIG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 61 (257)
T PRK07024 4 KVF-ITGASSGIGQALAREYARQ-------GATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRD 61 (257)
T ss_pred EEE-EEcCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCC
Confidence 444 3456788889998888752 3478999999888766555443222 45566666654
No 422
>PRK06196 oxidoreductase; Provisional
Probab=30.00 E-value=3.4e+02 Score=29.04 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=37.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..||=.+ |.|+...+++..+... ...|++.+.+..++..+...+. .+.+...|..+
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~-------G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d 82 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQA-------GAHVIVPARRPDVAREALAGID-----GVEVVMLDLAD 82 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCC
Confidence 45666444 6688888888887652 3478889998887766554443 24455566554
No 423
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.00 E-value=4.3e+02 Score=27.64 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=24.3
Q ss_pred CCEEEeecCCCC-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004763 79 DHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (732)
Q Consensus 79 g~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid 120 (732)
|..+|=.+|+.| +....+++.+... ...|+..+.+
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~-------G~~vil~~r~ 41 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHRE-------GAELAFTYQN 41 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHC-------CCEEEEEecc
Confidence 567777788763 8888888877642 3467777766
No 424
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=29.69 E-value=3e+02 Score=29.74 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=31.1
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~ 136 (732)
..+++|++||= .|.|+....+++..... ....|++.|.++.+...+. .+|.
T Consensus 170 ~~~~~g~~vlI--~g~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~ 220 (350)
T cd08256 170 ANIKFDDVVVL--AGAGPLGLGMIGAARLK------NPKKLIVLDLKDERLALAR----KFGA 220 (350)
T ss_pred cCCCCCCEEEE--ECCCHHHHHHHHHHHHc------CCcEEEEEcCCHHHHHHHH----HcCC
Confidence 45678988876 44466554444433321 1246889999988876543 4565
No 425
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=29.54 E-value=3.2e+02 Score=28.98 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
.+++|+.||=. .|+|.....+++..... ...|++.+.+..+...+ +.+|..
T Consensus 137 ~~~~g~~vlI~-g~~g~ig~~~~~lak~~-------G~~v~~~~~~~~~~~~~----~~~g~~ 187 (327)
T PRK10754 137 EIKPDEQFLFH-AAAGGVGLIACQWAKAL-------GAKLIGTVGSAQKAQRA----KKAGAW 187 (327)
T ss_pred CCCCCCEEEEE-eCCcHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHH----HHCCCC
Confidence 56789888854 34444443333333221 24588889888887766 346653
No 426
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=29.53 E-value=2.4e+02 Score=30.21 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
.+++|.+||=. |.|+....++++.... +...|++.+.+..|...+. .+|..
T Consensus 163 ~~~~g~~vlI~--g~g~~g~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~~ 213 (345)
T cd08286 163 KVKPGDTVAIV--GAGPVGLAALLTAQLY------SPSKIIMVDLDDNRLEVAK----KLGAT 213 (345)
T ss_pred CCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHH----HhCCC
Confidence 46788888774 3366544444444321 1146888999998877654 35653
No 427
>PRK06484 short chain dehydrogenase; Validated
Probab=29.41 E-value=3.6e+02 Score=31.02 Aligned_cols=132 Identities=9% Similarity=0.039 Sum_probs=67.0
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
.|..+| +.-|.|+....++..|... ...|+..+.+..++..+... ++. .+.....|..+...+. .
T Consensus 268 ~~k~~l-ItGas~gIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~D~~~~~~~~--~- 332 (520)
T PRK06484 268 SPRVVA-ITGGARGIGRAVADRFAAA-------GDRLLIIDRDAEGAKKLAEA---LGD-EHLSVQADITDEAAVE--S- 332 (520)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHH---hCC-ceeEEEccCCCHHHHH--H-
Confidence 455666 5556777888888887652 34899999998888766543 332 2333445544321110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC-Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD-GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd-Gtl-rk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
...........+|.++..+-.... +.+ ...++.|.+--.- ++. --..+++.++..++.+|+||+.+
T Consensus 333 --------~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~---n~~-~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 333 --------AFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDV---NLS-GAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHh---CcH-HHHHHHHHHHHHhccCCEEEEEC
Confidence 000001112568988875532211 111 1223333321111 111 12334556666667789988764
Q ss_pred C
Q 004763 236 C 236 (732)
Q Consensus 236 C 236 (732)
.
T Consensus 401 S 401 (520)
T PRK06484 401 S 401 (520)
T ss_pred c
Confidence 3
No 428
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.33 E-value=1.1e+02 Score=34.63 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEc
Q 004763 212 SLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
.+|. .+++-+.++.|||.||.+-
T Consensus 203 ~i~~-~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 203 PIQV-NIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hHHH-HHHHHHHhccCCCeEEEEe
Confidence 3555 7899999999999999863
No 429
>PRK07062 short chain dehydrogenase; Provisional
Probab=29.26 E-value=4.4e+02 Score=27.01 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=40.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~ 148 (732)
|..+|=.+ |.|+....++..+... ...|++.+.+..++..+.+.+.... ...+.+...|..+
T Consensus 8 ~k~~lItG-as~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 8 GRVAVVTG-GSSGIGLATVELLLEA-------GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 55666555 5566677788777642 3579999999988887777665432 2345556666554
No 430
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.09 E-value=5.7e+02 Score=25.77 Aligned_cols=61 Identities=2% Similarity=-0.030 Sum_probs=37.5
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvA-nDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +.-|.|+...+++..+... ...|+. .+.+..+...+...++..+ .++.+...|..+
T Consensus 4 ~~~vl-ItGa~g~iG~~~a~~l~~~-------g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 65 (250)
T PRK08063 4 GKVAL-VTGSSRGIGKAIALRLAEE-------GYDIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGD 65 (250)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCC
Confidence 45666 4445688889999888752 225554 4666777666666665554 345555566554
No 431
>PRK07806 short chain dehydrogenase; Provisional
Probab=29.07 E-value=4.9e+02 Score=26.23 Aligned_cols=128 Identities=12% Similarity=0.090 Sum_probs=63.4
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~-~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
+.+||-.+ |.|+...+++..+... .-.|++.+.+. .+...+...++..+ .++.+...|..+...+. ..
T Consensus 6 ~k~vlItG-asggiG~~l~~~l~~~-------G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~--~~ 74 (248)
T PRK07806 6 GKTALVTG-SSRGIGADTAKILAGA-------GAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVA--AL 74 (248)
T ss_pred CcEEEEEC-CCCcHHHHHHHHHHHC-------CCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHH--HH
Confidence 45677554 5677888888877642 23677777654 45555555454433 34555666655421110 00
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
..........+|.|+..+. .+... +..|......+ ..-...+++.+.++++.+|++|+.+
T Consensus 75 ---------~~~~~~~~~~~d~vi~~ag---~~~~~-----~~~~~~~~~vn-~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 75 ---------MDTAREEFGGLDALVLNAS---GGMES-----GMDEDYAMRLN-RDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred ---------HHHHHHhCCCCcEEEECCC---CCCCC-----CCCcceeeEee-eHHHHHHHHHHHhhccCCceEEEEe
Confidence 0000011135788876542 11100 00111100011 1234567777887777778888763
No 432
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.04 E-value=2.2e+02 Score=29.50 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=26.1
Q ss_pred CCEEEeecCC-CChHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004763 79 DHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (732)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid 120 (732)
+..||=.+|+ .++....++..+... ...|+..+.+
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~-------G~~v~l~~r~ 42 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQ-------GAEVVLTGFG 42 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHC-------CCEEEEecCc
Confidence 5688888885 688888888888752 3478888765
No 433
>PRK12742 oxidoreductase; Provisional
Probab=28.53 E-value=4.8e+02 Score=26.06 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=25.7
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHH
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLL 127 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~Rl~~L 127 (732)
+.+|| +-.|.|+....++..+... ...|+.... +.+++..+
T Consensus 6 ~k~vl-ItGasggIG~~~a~~l~~~-------G~~v~~~~~~~~~~~~~l 47 (237)
T PRK12742 6 GKKVL-VLGGSRGIGAAIVRRFVTD-------GANVRFTYAGSKDAAERL 47 (237)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHC-------CCEEEEecCCCHHHHHHH
Confidence 56677 4556788888888887652 236666544 44555443
No 434
>PRK09186 flagellin modification protein A; Provisional
Probab=28.39 E-value=3.2e+02 Score=27.75 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=40.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR-lg~~ni~Vt~~Da~~ 148 (732)
+.+||= .-|+|+...+++..+... ...|+..+.+..++..+...++. .+...+.++..|..+
T Consensus 4 ~k~vlI-tGas~giG~~~a~~l~~~-------g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 4 GKTILI-TGAGGLIGSALVKAILEA-------GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD 66 (256)
T ss_pred CCEEEE-ECCCchHHHHHHHHHHHC-------CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC
Confidence 445554 445678889999888652 34788889888888777666543 233344455566654
No 435
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.30 E-value=4e+02 Score=27.97 Aligned_cols=133 Identities=12% Similarity=0.051 Sum_probs=64.3
Q ss_pred CCEEEeecCC-CChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
|..+|=.+|+ .++....+++.+... ...|+....+......+.+..+.++. ..+...|..+...+.-
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~-------G~~V~l~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~--- 77 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAA-------GAELAFTYQGDALKKRVEPLAAELGA--FVAGHCDVTDEASIDA--- 77 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC-------CCEEEEEcCchHHHHHHHHHHHhcCC--ceEEecCCCCHHHHHH---
Confidence 5677777776 478889999888652 34666665543222333333333332 3334555544221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtl-rk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
............|.++..+--... +.+ ...++.|.+ .-..++ .-...+++.++.+++.+|+||
T Consensus 78 --------~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~---~~~vN~-~~~~~l~~~~~~~~~~~g~Iv 145 (272)
T PRK08159 78 --------VFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTM---TMDISV-YSFTAVAQRAEKLMTDGGSIL 145 (272)
T ss_pred --------HHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHH---HHhHHH-HHHHHHHHHHHHhcCCCceEE
Confidence 000011123568988876532211 111 112233332 111111 123456666777777789988
Q ss_pred EEc
Q 004763 233 YST 235 (732)
Q Consensus 233 YST 235 (732)
..+
T Consensus 146 ~is 148 (272)
T PRK08159 146 TLT 148 (272)
T ss_pred EEe
Confidence 664
No 436
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.23 E-value=3.5e+02 Score=28.10 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
.+++|+.||=..| +|+....++++.... ...|++...+.++...+. .+|...
T Consensus 139 ~~~~g~~vlV~ga-~g~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~~----~~g~~~ 190 (320)
T cd08243 139 GLQPGDTLLIRGG-TSSVGLAALKLAKAL-------GATVTATTRSPERAALLK----ELGADE 190 (320)
T ss_pred CCCCCCEEEEEcC-CChHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHH----hcCCcE
Confidence 4678888885543 455444444443321 246888888888776553 366543
No 437
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.97 E-value=1.5e+02 Score=26.62 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHhcCCCCCCCCCe-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 87 AAPGSKTFQLLEIIHQSTNPGALPNG-MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 87 AAPGsKT~qLae~l~~~~~~~~~p~G-~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+|-|..+.++++.|.. .+ .|+.+|.+++++..+.. .+ +.+..+|+.+
T Consensus 4 ~G~g~~~~~i~~~L~~--------~~~~vvvid~d~~~~~~~~~----~~---~~~i~gd~~~ 51 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE--------GGIDVVVIDRDPERVEELRE----EG---VEVIYGDATD 51 (116)
T ss_dssp ES-SHHHHHHHHHHHH--------TTSEEEEEESSHHHHHHHHH----TT---SEEEES-TTS
T ss_pred EcCCHHHHHHHHHHHh--------CCCEEEEEECCcHHHHHHHh----cc---cccccccchh
Confidence 5778999999999986 35 89999999999877654 33 5677888776
No 438
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=27.93 E-value=5e+02 Score=27.82 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=38.9
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||= ..|.|+...+++..|... ...|+..+.+..+...+...+.. ...++.+...|..+
T Consensus 6 ~k~vlV-TGas~gIG~~~a~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~ 66 (322)
T PRK07453 6 KGTVII-TGASSGVGLYAAKALAKR-------GWHVIMACRNLKKAEAAAQELGI-PPDSYTIIHIDLGD 66 (322)
T ss_pred CCEEEE-EcCCChHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHhhc-cCCceEEEEecCCC
Confidence 445664 445688888888887652 34788899988887766655432 12245555566544
No 439
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=27.81 E-value=3.1e+02 Score=28.93 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=29.6
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~ 129 (732)
.+.+++.||=.+ |+|+....+++..... ...|++.+.+..+...+..
T Consensus 142 ~~~~~~~vlI~g-~~g~ig~~~~~~a~~~-------G~~vi~~~~~~~~~~~~~~ 188 (329)
T cd05288 142 KPKPGETVVVSA-AAGAVGSVVGQIAKLL-------GARVVGIAGSDEKCRWLVE 188 (329)
T ss_pred CCCCCCEEEEec-CcchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHh
Confidence 467888888554 3455544444444431 3478999988888776643
No 440
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=27.67 E-value=4.1e+02 Score=28.49 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=31.9
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~ 136 (732)
+.++++++||=.+ +|+....+++++... ...|++.+.+.+|...+. .+|.
T Consensus 159 ~~~~~~~~vlV~g--~g~iG~~~~~~a~~~-------G~~vi~~~~~~~~~~~~~----~~g~ 208 (333)
T cd08296 159 SGAKPGDLVAVQG--IGGLGHLAVQYAAKM-------GFRTVAISRGSDKADLAR----KLGA 208 (333)
T ss_pred cCCCCCCEEEEEC--CcHHHHHHHHHHHHC-------CCeEEEEeCChHHHHHHH----HcCC
Confidence 3677899888775 355544444443321 236899999988877663 4665
No 441
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=27.61 E-value=20 Score=42.01 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=14.7
Q ss_pred EEeecCCCChHHHHHHHH
Q 004763 82 VLDMCAAPGSKTFQLLEI 99 (732)
Q Consensus 82 VLDmCAAPGsKT~qLae~ 99 (732)
.-||||||||++-.++-.
T Consensus 271 FaDvCAGPGGFSEYvLwR 288 (845)
T KOG3673|consen 271 FADVCAGPGGFSEYVLWR 288 (845)
T ss_pred HHhhhcCCCccchhhhhh
Confidence 458999999999887643
No 442
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=27.41 E-value=1.2e+02 Score=32.02 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=37.6
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRl 134 (732)
-.+|+.|||-.+|+|...... ..++ -..+++|+++.=+..+...+.+.
T Consensus 220 s~~~diVlDpf~GsGtt~~aa-~~~~----------r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAA-KNLG----------RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCEEeecCCCCChHHHHH-HHcC----------CceEEEecCHHHHHHHHHHHHhh
Confidence 578999999999999855444 4432 46788999999999888877654
No 443
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=27.35 E-value=99 Score=33.82 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=58.5
Q ss_pred CCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccC
Q 004763 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~ 155 (732)
...|..+||.+||-|-- ++. .|.-.+++.|++.. |..-++|-|.. .+...|+.+.|.
T Consensus 43 ~~~gsv~~d~gCGngky-------~~~------~p~~~~ig~D~c~~----l~~~ak~~~~~--~~~~ad~l~~p~---- 99 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKY-------LGV------NPLCLIIGCDLCTG----LLGGAKRSGGD--NVCRADALKLPF---- 99 (293)
T ss_pred cCCcceeeecccCCccc-------CcC------CCcceeeecchhhh----hccccccCCCc--eeehhhhhcCCC----
Confidence 34488999999998853 221 24567889987444 33334444433 344566666542
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE-EEEE
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR-IVYS 234 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGr-LVYS 234 (732)
....||.+|.=+ +...|+. ...-.++++..++.|+|||. +||+
T Consensus 100 -----------------~~~s~d~~lsia-------------vihhlsT------~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 100 -----------------REESFDAALSIA-------------VIHHLST------RERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred -----------------CCCccccchhhh-------------hhhhhhh------HHHHHHHHHHHHHHhcCCCceEEEE
Confidence 235677776411 1111111 12335688899999999996 5564
No 444
>PRK07060 short chain dehydrogenase; Provisional
Probab=27.12 E-value=5.1e+02 Score=25.97 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=29.9
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
.+.++| +..|.|+...+++..+... .-.|+.++.+.+++..+.
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~-------g~~V~~~~r~~~~~~~~~ 50 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQR-------GARVVAAARNAAALDRLA 50 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHH
Confidence 355666 5666688888888887652 237889999887765444
No 445
>PRK05854 short chain dehydrogenase; Provisional
Probab=27.06 E-value=5.6e+02 Score=27.50 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=42.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHF 149 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~f 149 (732)
|..|| +.-|.|+....++..|... ...|+....+..+...+...+.... ..++.+...|...+
T Consensus 14 gk~~l-ITGas~GIG~~~a~~La~~-------G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 14 GKRAV-VTGASDGLGLGLARRLAAA-------GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL 77 (313)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence 45555 5556678888888887642 3578888999888877776665432 23466666676553
No 446
>PRK05855 short chain dehydrogenase; Validated
Probab=26.74 E-value=3.6e+02 Score=31.01 Aligned_cols=61 Identities=10% Similarity=0.057 Sum_probs=42.1
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.++| +--|+|+...+++..|... .-.|+..+.+..++..+...++..+. ++.+...|..+
T Consensus 315 ~~~~l-v~G~s~giG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 375 (582)
T PRK05855 315 GKLVV-VTGAGSGIGRETALAFARE-------GAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSD 375 (582)
T ss_pred CCEEE-EECCcCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 45566 4445788888888888652 34688899998888877777666553 45666666654
No 447
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.71 E-value=6.9e+02 Score=25.61 Aligned_cols=63 Identities=2% Similarity=-0.059 Sum_probs=35.8
Q ss_pred CCCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCC-----------HHHHHHHHHHHHHcCCCceEEEecc
Q 004763 78 PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLD-----------VQRCNLLIHQTKRMCTANLIVTNHE 145 (732)
Q Consensus 78 pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid-----------~~Rl~~L~~n~kRlg~~ni~Vt~~D 145 (732)
.|.+||=.+|.. |+....++..+... ...|+..++. ......+.+.+++.+. .+.+...|
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~-------G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D 76 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEA-------GADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELD 76 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHC-------CCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcC
Confidence 366788788774 67778888777652 2356655421 2333344455555553 45555666
Q ss_pred ccc
Q 004763 146 AQH 148 (732)
Q Consensus 146 a~~ 148 (732)
..+
T Consensus 77 ~~~ 79 (256)
T PRK12859 77 LTQ 79 (256)
T ss_pred CCC
Confidence 544
No 448
>PRK06500 short chain dehydrogenase; Provisional
Probab=26.70 E-value=4.1e+02 Score=26.70 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=34.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +..|.|+....+++.+... .-.|++.+.+...+..+.. +++. .+.+...|..+
T Consensus 6 ~k~vl-ItGasg~iG~~la~~l~~~-------g~~v~~~~r~~~~~~~~~~---~~~~-~~~~~~~D~~~ 63 (249)
T PRK06500 6 GKTAL-ITGGTSGIGLETARQFLAE-------GARVAITGRDPASLEAARA---ELGE-SALVIRADAGD 63 (249)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC-------CCEEEEecCCHHHHHHHHH---HhCC-ceEEEEecCCC
Confidence 44444 4556688888888887652 2478888888766554433 3342 34444455433
No 449
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=26.57 E-value=2.5e+02 Score=30.48 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=59.6
Q ss_pred CEEEeecCCC--ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCCccC
Q 004763 80 HFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRAN 155 (732)
Q Consensus 80 ~~VLDmCAAP--GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n--i~Vt~~Da~~fp~~~~~ 155 (732)
...||++||- -+-+=++|+... |..+|+-+|.|+--+...+..+.. .++ ..++..|...-..+ +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~--------P~aRVVYVD~DPvv~ah~ralL~~--~~~g~t~~v~aD~r~p~~i-L~ 138 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA--------PDARVVYVDNDPVVLAHARALLAD--NPRGRTAYVQADLRDPEAI-LA 138 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH---------TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-HHHH-HC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC--------CCceEEEECCCchHHHHHHhhhcC--CCCccEEEEeCCCCCHHHH-hc
Confidence 5789999882 234667777764 679999999999877765554432 344 77888887763221 10
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
... .. ....-...+=.+|+ |++...+|. ..-..|+.+-...|.||..|+.|-
T Consensus 139 ~p~-------~~-~~lD~~rPVavll~-------~vLh~v~D~-------------~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 139 HPE-------VR-GLLDFDRPVAVLLV-------AVLHFVPDD-------------DDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp SHH-------HH-CC--TTS--EEEEC-------T-GGGS-CG-------------CTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CHH-------HH-hcCCCCCCeeeeee-------eeeccCCCc-------------cCHHHHHHHHHHhCCCCceEEEEe
Confidence 000 00 00000112223333 333333321 112568889999999999999996
Q ss_pred CCC
Q 004763 236 CSM 238 (732)
Q Consensus 236 CSl 238 (732)
.+-
T Consensus 191 ~t~ 193 (267)
T PF04672_consen 191 ATD 193 (267)
T ss_dssp EB-
T ss_pred cCC
Confidence 553
No 450
>PRK05866 short chain dehydrogenase; Provisional
Probab=26.41 E-value=3.5e+02 Score=28.82 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=41.2
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +..|.|+....+++.+... ...|++.+.+.+++..+...+...+. .+.+...|..+
T Consensus 40 ~k~vl-ItGasggIG~~la~~La~~-------G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d 100 (293)
T PRK05866 40 GKRIL-LTGASSGIGEAAAEQFARR-------GATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSD 100 (293)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 34555 5556788888888888652 35899999999888877776655443 34455556544
No 451
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=26.17 E-value=2.8e+02 Score=29.62 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCCCCCEEEeecCCC--ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 75 DVQPDHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 75 d~~pg~~VLDmCAAP--GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
.++++++||=..+++ |.-++++|..+ .-.|++...+.++...+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~----------g~~v~~~~~~~~~~~~~ 206 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAM----------GLRVIAIDVGDEKLELA 206 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC----------CCeEEEEeCCHHHHHHH
Confidence 678899998776643 33344444443 23788888888887765
No 452
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=26.13 E-value=5.8e+02 Score=26.17 Aligned_cols=62 Identities=6% Similarity=0.007 Sum_probs=35.5
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn-Did~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
|.+|| +.-|.|+....++..+... ...|+.. ..+.+++..+...++......+.+...|..+
T Consensus 8 ~k~vl-ItGas~gIG~~ia~~l~~~-------G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (260)
T PRK08416 8 GKTLV-ISGGTRGIGKAIVYEFAQS-------GVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE 70 (260)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence 55666 4445577777888777642 2345554 4566777666655543222345566666654
No 453
>PRK06940 short chain dehydrogenase; Provisional
Probab=25.61 E-value=6e+02 Score=26.57 Aligned_cols=50 Identities=6% Similarity=0.064 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 90 GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 90 GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
|+...++++.+.. ...|++.|.+..++..+.+.++..+. .+.+...|..+
T Consensus 11 ~gIG~~la~~l~~--------G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 60 (275)
T PRK06940 11 GGIGQAIARRVGA--------GKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSS 60 (275)
T ss_pred ChHHHHHHHHHhC--------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 6888999988852 35799999998887766666654432 45555666554
No 454
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=25.49 E-value=6.9e+02 Score=26.42 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=29.0
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
+.++++..||-.+ .|+....+++++... ...|++.+.+..+...+
T Consensus 158 ~~~~~~~~vlI~g--~g~iG~~~~~~a~~~-------G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 158 AGPRPGERVAVLG--IGGLGHLAVQYARAM-------GFETVAITRSPDKRELA 202 (330)
T ss_pred hCCCCCCEEEEEC--CCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHH
Confidence 3567899999884 355444444444331 24688888888887665
No 455
>PRK07041 short chain dehydrogenase; Provisional
Probab=25.37 E-value=4.5e+02 Score=26.19 Aligned_cols=54 Identities=7% Similarity=-0.008 Sum_probs=35.4
Q ss_pred cCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 86 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 86 CAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
..|+|+....++..+... .-.|++++.+..++..+...++. + .++.+...|..+
T Consensus 3 tGas~~iG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~ 56 (230)
T PRK07041 3 VGGSSGIGLALARAFAAE-------GARVTIASRSRDRLAAAARALGG-G-APVRTAALDITD 56 (230)
T ss_pred ecCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCC
Confidence 346788888888887652 34789999998877766555431 2 345555666554
No 456
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=25.11 E-value=2.4e+02 Score=30.30 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCCCEEEeecCCC-ChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 77 QPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 77 ~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
.+|++||=.++|+ |..+.++|..++ ...|++.+.+.++..++. .+|..
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G---------~~~v~~~~~~~~~~~~~~----~lg~~ 210 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG---------ARHVVITDVNEYRLELAR----KMGAT 210 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHH----HhCCc
Confidence 5788888754322 223444444432 225777788888776554 45653
No 457
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=24.99 E-value=7.4e+02 Score=25.41 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=39.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+| .|+...+++..+... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 10 ~k~~lItGa-~~~iG~~ia~~l~~~-------G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 70 (265)
T PRK07097 10 GKIALITGA-SYGIGFAIAKAYAKA-------GATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTD 70 (265)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 445665554 466677777776642 34688889998888877777765543 35555666554
No 458
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=24.80 E-value=4.3e+02 Score=28.80 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=28.6
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
..+++|.+||-. ++ |+....+++++... +...|++.+.+..+...+
T Consensus 178 ~~~~~g~~vLI~-g~-g~vG~a~i~lak~~------G~~~Vi~~~~~~~~~~~~ 223 (363)
T cd08279 178 ARVRPGDTVAVI-GC-GGVGLNAIQGARIA------GASRIIAVDPVPEKLELA 223 (363)
T ss_pred cCCCCCCEEEEE-CC-CHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHH
Confidence 356789999988 33 55444444443321 122488999888887765
No 459
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=24.78 E-value=5e+02 Score=26.62 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=28.0
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
.+++|..||=.+| +|+....++++.... ...|++.+.+..+...+
T Consensus 133 ~~~~g~~vlI~g~-~g~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 133 PVKPGDTVLVHAA-AGGVGLLLTQWAKAL-------GATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCCCCEEEEEcC-CchHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHH
Confidence 4678888886654 444444433333321 34688888888887765
No 460
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.66 E-value=5.2e+02 Score=27.61 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCC-HHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD-VQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid-~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
|..+| +.-|.|+....++..|... ...|+.+|.+ ..+...+...++..+ ..+.+...|..+
T Consensus 12 ~k~~l-VTGas~gIG~~ia~~L~~~-------Ga~Vv~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dv~d 73 (306)
T PRK07792 12 GKVAV-VTGAAAGLGRAEALGLARL-------GATVVVNDVASALDASDVLDEIRAAG-AKAVAVAGDISQ 73 (306)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHC-------CCEEEEecCCchhHHHHHHHHHHhcC-CeEEEEeCCCCC
Confidence 45666 5566677888888877652 3478888874 445555555555444 245555566544
No 461
>PRK07109 short chain dehydrogenase; Provisional
Probab=24.53 E-value=6.3e+02 Score=27.54 Aligned_cols=61 Identities=7% Similarity=-0.002 Sum_probs=41.7
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..||=. -|+|+....++..+... ...|+..+.+..++..+...++..+. .+.++..|..+
T Consensus 8 ~k~vlIT-Gas~gIG~~la~~la~~-------G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d 68 (334)
T PRK07109 8 RQVVVIT-GASAGVGRATARAFARR-------GAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVAD 68 (334)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCC
Confidence 4455544 46677788888777642 34789999999998888887776654 45555666554
No 462
>PRK05872 short chain dehydrogenase; Provisional
Probab=24.48 E-value=5.5e+02 Score=27.21 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=32.6
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~ 131 (732)
.|..||=.+ |.|+....+++.+... ...|+..+.+..++..+.+.+
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~l~~~~~~l 53 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHAR-------GAKLALVDLEEAELAALAAEL 53 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHh
Confidence 366777444 6677788888888652 347899999988877665544
No 463
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=24.45 E-value=4.5e+02 Score=27.38 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=31.9
Q ss_pred hcCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeE-EEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM-VIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~-VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
...+++|..||=. + +|+....++++.... ... |++...+.++..++ +.+|..
T Consensus 124 ~~~~~~~~~vlI~-g-~g~vg~~~~~la~~~-------g~~~v~~~~~~~~~~~~~----~~~g~~ 176 (312)
T cd08269 124 RGWIRAGKTVAVI-G-AGFIGLLFLQLAAAA-------GARRVIAIDRRPARLALA----RELGAT 176 (312)
T ss_pred hcCCCCCCEEEEE-C-CCHHHHHHHHHHHHc-------CCcEEEEECCCHHHHHHH----HHhCCc
Confidence 3456788888877 3 466655555554431 234 88888887777633 446653
No 464
>PRK08251 short chain dehydrogenase; Provisional
Probab=24.34 E-value=7.4e+02 Score=24.93 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=40.9
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~ 148 (732)
.+|| +.-|.|+....+++.+... .-.|+..+.+..+...+...+.... ..++.+...|..+
T Consensus 3 k~vl-ItGas~giG~~la~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKIL-ITGASSGLGAGMAREFAAK-------GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND 64 (248)
T ss_pred CEEE-EECCCCHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Confidence 3455 4446788889898888652 2478899999998887766654432 2346666666654
No 465
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.32 E-value=7.6e+02 Score=25.36 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=42.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.+.+||=.+ |.|+...++++.+... ...|+..+.+.+.+..+...++..+. .+.+...|..+
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~-------G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 70 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEA-------GADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAH 70 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 366777666 4677888888877642 35899999998888777776655442 35555566544
No 466
>PRK05875 short chain dehydrogenase; Provisional
Probab=24.30 E-value=6.8e+02 Score=25.80 Aligned_cols=62 Identities=5% Similarity=-0.034 Sum_probs=40.7
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg-~~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|+....+++.+... .-.|++.+.+..+...+...+...+ ..++.+...|..+
T Consensus 7 ~k~vlItG-asg~IG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 7 DRTYLVTG-GGSGIGKGVAAGLVAA-------GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD 69 (276)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC
Confidence 56777555 5577888888877652 2378999998887766666554433 2356666666544
No 467
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=24.09 E-value=1.7e+02 Score=29.75 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEecccccCCCCccCCCCCCCCccccc
Q 004763 89 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ-TKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIE 167 (732)
Q Consensus 89 PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n-~kRlg~~ni~Vt~~Da~~fp~~~~~~~~~~~~~~~~~ 167 (732)
+++....+++.+... ...|+.++.+.+.+....+. .+..+.. +...|...-..+. . ..
T Consensus 5 s~GiG~aia~~l~~~-------Ga~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~~~~~~v~--~---------~~ 63 (241)
T PF13561_consen 5 SSGIGRAIARALAEE-------GANVILTDRNEEKLADALEELAKEYGAE---VIQCDLSDEESVE--A---------LF 63 (241)
T ss_dssp TSHHHHHHHHHHHHT-------TEEEEEEESSHHHHHHHHHHHHHHTTSE---EEESCTTSHHHHH--H---------HH
T ss_pred CCChHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHHHHHcCCc---eEeecCcchHHHH--H---------HH
Confidence 577788888887753 57999999999986444333 3445532 4556654311110 0 00
Q ss_pred ccccccc-ccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004763 168 SESNMGQ-LLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (732)
Q Consensus 168 ~~~~~~~-~~FDrVL~DvPCSGd----Gtl-rk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (732)
....... ..+|.++..+.-+.. +.+ .-..+.|.+. - .....-...+++.++.+++.+|.+|+.+
T Consensus 64 ~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 64 DEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKT---F-DINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp HHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHH---H-HHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHH---H-HHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 0111223 678988875432211 110 0111222221 1 1111234567777888899999988753
No 468
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=24.08 E-value=5e+02 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=18.3
Q ss_pred CCEEEeecCC-CChHHHHHHHHHhc
Q 004763 79 DHFVLDMCAA-PGSKTFQLLEIIHQ 102 (732)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~l~~ 102 (732)
|..||=.+|+ .++....++..+..
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~ 30 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHA 30 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHH
Confidence 5677777774 57888888888865
No 469
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=24.01 E-value=5.3e+02 Score=27.01 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=28.5
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
+.++++..||=.++ +|+....+++++... ...|++.+.+.++...+
T Consensus 138 ~~~~~~~~vlI~g~-~~~~g~~~~~la~~~-------g~~v~~~~~~~~~~~~~ 183 (324)
T cd08244 138 ATLTPGDVVLVTAA-AGGLGSLLVQLAKAA-------GATVVGAAGGPAKTALV 183 (324)
T ss_pred cCCCCCCEEEEEcC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHH
Confidence 35678888775543 455444444443331 24689999888887765
No 470
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=23.93 E-value=1.6e+02 Score=32.12 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=33.3
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
-.++|||.||=-.| -||....+.+++... ...+||.-...+..+.+++ .|..
T Consensus 142 y~vkpGhtVlvhaA-AGGVGlll~Ql~ra~-------~a~tI~~asTaeK~~~ake----nG~~ 193 (336)
T KOG1197|consen 142 YNVKPGHTVLVHAA-AGGVGLLLCQLLRAV-------GAHTIATASTAEKHEIAKE----NGAE 193 (336)
T ss_pred cCCCCCCEEEEEec-cccHHHHHHHHHHhc-------CcEEEEEeccHHHHHHHHh----cCCc
Confidence 36899999995444 455555555555431 3578888777777765544 5654
No 471
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=23.88 E-value=3.9e+02 Score=28.43 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=27.8
Q ss_pred CCCEEEeecCCCChHH---HHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004763 78 PDHFVLDMCAAPGSKT---FQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT---~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~n 138 (732)
++..+|=.-.|+|+.. +|+|..+ ...|++.+.+..|...++. +|...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~----------G~~vi~~~~~~~~~~~~~~----~g~~~ 191 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD----------GIKVINIVRRKEQVDLLKK----IGAEY 191 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHH----cCCcE
Confidence 4545553334555544 4444443 2468999999988877643 66543
No 472
>PRK08267 short chain dehydrogenase; Provisional
Probab=23.82 E-value=7e+02 Score=25.41 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=36.4
Q ss_pred ecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 85 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 85 mCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..|+|+....++..+... .-.|++.+.+...+..+.+.+. ..++.+...|..+
T Consensus 6 ItGasg~iG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~ 59 (260)
T PRK08267 6 ITGAASGIGRATALLFAAE-------GWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTD 59 (260)
T ss_pred EeCCCchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCC
Confidence 3446688888888887652 2478999999888776655433 2346666667655
No 473
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=23.69 E-value=5.7e+02 Score=24.13 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=33.3
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~ 131 (732)
.+.+||=++| |+-+..++..|... ....|+-...+.+|+..|.+.+
T Consensus 11 ~~~~vlviGa--Gg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 11 KGKRVLVIGA--GGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TTSEEEEESS--SHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHc
Confidence 4778888887 66666666666652 2356777779999998887766
No 474
>PRK08589 short chain dehydrogenase; Validated
Probab=23.67 E-value=6.7e+02 Score=26.04 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=37.9
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+|| +.-|.|+....++..+... ...|++++.+ .++..+...++..+. ++.+...|..+
T Consensus 6 ~k~vl-ItGas~gIG~aia~~l~~~-------G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 65 (272)
T PRK08589 6 NKVAV-ITGASTGIGQASAIALAQE-------GAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISD 65 (272)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHC-------CCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 44555 4455677788888877652 3588999998 666666666654442 35555556544
No 475
>PRK08628 short chain dehydrogenase; Provisional
Probab=23.62 E-value=6.3e+02 Score=25.67 Aligned_cols=60 Identities=3% Similarity=-0.020 Sum_probs=35.8
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
|..||=.+ |.|+...+++..+... ...|+.++.+.... .+...++..+. ++.+...|..+
T Consensus 7 ~~~ilItG-asggiG~~la~~l~~~-------G~~v~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~D~~~ 66 (258)
T PRK08628 7 DKVVIVTG-GASGIGAAISLRLAEE-------GAIPVIFGRSAPDD-EFAEELRALQP-RAEFVQVDLTD 66 (258)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHc-------CCcEEEEcCChhhH-HHHHHHHhcCC-ceEEEEccCCC
Confidence 44555444 5677888888877652 34677788877766 33344444443 45556666554
No 476
>PRK09291 short chain dehydrogenase; Provisional
Probab=23.52 E-value=7.7e+02 Score=24.87 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=39.1
Q ss_pred EEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+|| +.-|+|+....++..|... ...|++.+.+......+....+..+. .+.+...|..+
T Consensus 4 ~vl-VtGasg~iG~~ia~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 62 (257)
T PRK09291 4 TIL-ITGAGSGFGREVALRLARK-------GHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTD 62 (257)
T ss_pred EEE-EeCCCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCC
Confidence 455 3445788888888877642 35789999888877776666555543 35555566544
No 477
>PRK05884 short chain dehydrogenase; Provisional
Probab=23.45 E-value=3.5e+02 Score=27.41 Aligned_cols=38 Identities=5% Similarity=-0.067 Sum_probs=26.2
Q ss_pred cCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004763 86 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (732)
Q Consensus 86 CAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n 130 (732)
..|.|+....+++.+... ...|+..+.+.+++..+.+.
T Consensus 6 tGas~giG~~ia~~l~~~-------g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 6 TGGDTDLGRTIAEGFRND-------GHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred EeCCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHh
Confidence 345667778888877642 34788899988887655543
No 478
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=23.30 E-value=2.3e+02 Score=31.41 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=71.9
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH----cCCCceEEEecccccCCCCcc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR----MCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kR----lg~~ni~Vt~~Da~~fp~~~~ 154 (732)
-++||=++-|-|+..-..+ +|. .-+.+.-+|+|..-++.-..-+.. +.-+.+.+.-+|+..|-..
T Consensus 122 pkkvlVVgggDggvlrevi--kH~-------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-- 190 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVI--KHK-------SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-- 190 (337)
T ss_pred CCeEEEEecCCccceeeee--ccc-------cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH--
Confidence 4689999999999755443 232 146788888887766554444333 3335677777787765431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (732)
.....||+|++|-. | -.+......|..+..-.++.||+||.++
T Consensus 191 -----------------~~~~~~dVii~dss---d---------------pvgpa~~lf~~~~~~~v~~aLk~dgv~~ 233 (337)
T KOG1562|consen 191 -----------------LKENPFDVIITDSS---D---------------PVGPACALFQKPYFGLVLDALKGDGVVC 233 (337)
T ss_pred -----------------hccCCceEEEEecC---C---------------ccchHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 11378999999853 1 1123455678888888888999999885
No 479
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.30 E-value=7.7e+02 Score=24.76 Aligned_cols=135 Identities=10% Similarity=0.014 Sum_probs=64.3
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCCccCCC
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvA-nDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~~~~ 157 (732)
+.+||=.+ |.|+...+++..+... ...|+. ...+..........++..+. ++.+...|......+..
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~-------g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~--- 73 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKE-------GSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGCET--- 73 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHHHH---
Confidence 45677555 5677788888877642 234444 33444555444444554443 34445555543211100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004763 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (732)
...........+|.|+.-+.....+.+.. ..+.|..+-..+. .....++..+++.++.+|++|+.+.
T Consensus 74 --------~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~----~~~~~~~~~~~~~~~~~~~iv~~sS 141 (252)
T PRK06077 74 --------LAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDF----KSVIYCSQELAKEMREGGAIVNIAS 141 (252)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhC----HHHHHHHHHHHHHhhcCcEEEEEcc
Confidence 00000011246799988554333332221 1112222111111 1234556667777778899998754
Q ss_pred C
Q 004763 237 S 237 (732)
Q Consensus 237 S 237 (732)
.
T Consensus 142 ~ 142 (252)
T PRK06077 142 V 142 (252)
T ss_pred h
Confidence 3
No 480
>PRK05717 oxidoreductase; Validated
Probab=23.21 E-value=5.1e+02 Score=26.41 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=37.4
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
|.+||=.+ |.|+...+++..|... ...|+..|.+..+...+.+. ++ .++.+...|..+
T Consensus 10 ~k~vlItG-~sg~IG~~~a~~l~~~-------g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~ 67 (255)
T PRK05717 10 GRVALVTG-AARGIGLGIAAWLIAE-------GWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVAD 67 (255)
T ss_pred CCEEEEeC-CcchHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCC
Confidence 55677555 5688888888888652 34888899887776554332 33 245555666554
No 481
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=23.17 E-value=5.5e+02 Score=27.62 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=28.3
Q ss_pred CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004763 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (732)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L 127 (732)
+++.+||-.+ +|+....++++.... +...|++.+.+.+|...+
T Consensus 174 ~~~~~vlI~g--~g~vg~~~~~~a~~~------G~~~v~~~~~~~~~~~~~ 216 (350)
T cd08240 174 VADEPVVIIG--AGGLGLMALALLKAL------GPANIIVVDIDEAKLEAA 216 (350)
T ss_pred CCCCEEEEEC--CcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHH
Confidence 4788898873 466655555544431 123688889888888766
No 482
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.00 E-value=7.4e+02 Score=26.37 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004763 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (732)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~ 131 (732)
|.|.....||..+... .-.|+..|.+++++..+...+
T Consensus 11 GaG~mG~~iA~~la~~-------G~~V~l~d~~~~~~~~~~~~i 47 (292)
T PRK07530 11 GAGQMGNGIAHVCALA-------GYDVLLNDVSADRLEAGLATI 47 (292)
T ss_pred CCcHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHH
Confidence 4566666666666542 237999999999988765544
No 483
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=22.89 E-value=5.1e+02 Score=27.60 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=35.5
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~-~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|....+++..|... .-.|++...+......+.+.....+. .++.+...|..+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 67 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFR-------GYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLD 67 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHC-------CCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCC
Confidence 55666554 6799999999888752 23677776665544333222211121 345666666654
No 484
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=22.40 E-value=4.6e+02 Score=28.09 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=26.2
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~ 128 (732)
..++|.+||-. + .|+....++++.... +...|++.+.+..+..++.
T Consensus 158 ~~~~g~~vlI~-~-~g~vg~~a~~la~~~------G~~~v~~~~~~~~~~~~~~ 203 (340)
T TIGR00692 158 GPISGKSVLVT-G-AGPIGLMAIAVAKAS------GAYPVIVSDPNEYRLELAK 203 (340)
T ss_pred cCCCCCEEEEE-C-CCHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHH
Confidence 35688888884 3 355444433333321 1124788888888877553
No 485
>PRK12744 short chain dehydrogenase; Provisional
Probab=22.28 E-value=5.1e+02 Score=26.45 Aligned_cols=136 Identities=10% Similarity=-0.006 Sum_probs=62.5
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCC----HHHHHHHHHHHHHcCCCceEEEecccccCCCCcc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD----VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid----~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~fp~~~~ 154 (732)
+.+|| +..|.|+....+++.+... ...|+.++.+ ......+...++..+ .++.+...|......+.
T Consensus 8 ~k~vl-ItGa~~gIG~~~a~~l~~~-------G~~vv~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~- 77 (257)
T PRK12744 8 GKVVL-IAGGAKNLGGLIARDLAAQ-------GAKAVAIHYNSAASKADAEETVAAVKAAG-AKAVAFQADLTTAAAVE- 77 (257)
T ss_pred CcEEE-EECCCchHHHHHHHHHHHC-------CCcEEEEecCCccchHHHHHHHHHHHHhC-CcEEEEecCcCCHHHHH-
Confidence 45666 4446777888888888652 2344555432 233433444444333 24555566655422110
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004763 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlr-k~pd~w~~ws~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (732)
.. ...........|.|+..+-=...+.+. ..++-|.+ .-..++ .--..+++.++..++++|++++
T Consensus 78 -~~---------~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~---~~~~N~-~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 78 -KL---------FDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDE---MFAVNS-KSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred -HH---------HHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHH---HHhhhh-hHHHHHHHHHHHhhccCCCEEE
Confidence 00 000001124678888644211111111 11111221 011111 1123466777777888888887
Q ss_pred EcCCC
Q 004763 234 STCSM 238 (732)
Q Consensus 234 STCSl 238 (732)
.+.|.
T Consensus 144 ~~ss~ 148 (257)
T PRK12744 144 LVTSL 148 (257)
T ss_pred Eecch
Confidence 65554
No 486
>PRK07985 oxidoreductase; Provisional
Probab=22.22 E-value=6e+02 Score=26.98 Aligned_cols=62 Identities=6% Similarity=-0.076 Sum_probs=36.5
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid--~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.+.+||=.+ |.|+...+++..|... ...|+..+.+ ......+...+...+. .+.+...|..+
T Consensus 48 ~~k~vlITG-as~gIG~aia~~L~~~-------G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 111 (294)
T PRK07985 48 KDRKALVTG-GDSGIGRAAAIAYARE-------GADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSD 111 (294)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHC-------CCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCC
Confidence 356777666 4577788888888752 3467776653 3344555554444443 34555566554
No 487
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.19 E-value=5.6e+02 Score=27.39 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=30.6
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~ 136 (732)
..+++|..||=. |.|+....++++.... +-..|++.+.+..+..++. .+|.
T Consensus 164 ~~~~~g~~vlI~--g~g~vg~~~~~lak~~------G~~~v~~~~~~~~~~~~~~----~~ga 214 (345)
T cd08287 164 AGVRPGSTVVVV--GDGAVGLCAVLAAKRL------GAERIIAMSRHEDRQALAR----EFGA 214 (345)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCC
Confidence 456788888764 3566555544444331 1235899998887765443 4665
No 488
>PRK06101 short chain dehydrogenase; Provisional
Probab=22.12 E-value=6.5e+02 Score=25.45 Aligned_cols=52 Identities=19% Similarity=0.081 Sum_probs=35.2
Q ss_pred ecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 85 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 85 mCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+..|+|+...++++.|... ...|++.+.+.+++..+... + .++.+...|..+
T Consensus 6 ItGas~giG~~la~~L~~~-------G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~ 57 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQ-------GWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTD 57 (240)
T ss_pred EEcCCcHHHHHHHHHHHhC-------CCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCC
Confidence 5667889999999888652 34789999998877655432 1 234555666654
No 489
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=21.89 E-value=1.1e+02 Score=34.84 Aligned_cols=39 Identities=21% Similarity=-0.018 Sum_probs=29.3
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHH
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ 122 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~ 122 (732)
.+.-+-+.|.|++||+|..+..|+- +. +-.|+|+|.|..
T Consensus 149 ~~f~gi~~vvD~GaG~G~LSr~lSl--~y--------~lsV~aIegsq~ 187 (476)
T KOG2651|consen 149 SDFTGIDQVVDVGAGQGHLSRFLSL--GY--------GLSVKAIEGSQR 187 (476)
T ss_pred HhhcCCCeeEEcCCCchHHHHHHhh--cc--------CceEEEeccchH
Confidence 3446678999999999987776643 22 468999999843
No 490
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=21.86 E-value=3.4e+02 Score=28.89 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=29.8
Q ss_pred CCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004763 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (732)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~ 136 (732)
.+.++.+||=.+| |+....+++++... +...|++.+.+.++...+. .+|.
T Consensus 164 ~~~~~~~vlI~g~--~~vg~~~~~~a~~~------g~~~v~~~~~~~~~~~~~~----~~g~ 213 (340)
T cd05284 164 YLDPGSTVVVIGV--GGLGHIAVQILRAL------TPATVIAVDRSEEALKLAE----RLGA 213 (340)
T ss_pred cCCCCCEEEEEcC--cHHHHHHHHHHHHh------CCCcEEEEeCCHHHHHHHH----HhCC
Confidence 3567888887763 34444333433321 1147888988888877653 3565
No 491
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=21.66 E-value=4.9e+02 Score=27.68 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=32.2
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ 137 (732)
..+++|++||=.++ |+....++++... .....|++.+.+.++...+. .+|..
T Consensus 158 ~~~~~g~~vlV~g~--g~vG~~~~~la~~------~~g~~v~~~~~~~~~~~~~~----~~g~~ 209 (338)
T PRK09422 158 SGIKPGQWIAIYGA--GGLGNLALQYAKN------VFNAKVIAVDINDDKLALAK----EVGAD 209 (338)
T ss_pred cCCCCCCEEEEECC--cHHHHHHHHHHHH------hCCCeEEEEeCChHHHHHHH----HcCCc
Confidence 45788999988863 4443333333321 01257999999999887763 35653
No 492
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.52 E-value=6.1e+02 Score=27.04 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=27.3
Q ss_pred cCCCCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004763 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (732)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~ 136 (732)
..+++|.+||=.++ +|+....++++.... ...|++.+.+. +...+ +.+|.
T Consensus 173 ~~~~~g~~vlI~g~-~g~ig~~~~~~a~~~-------g~~vi~~~~~~-~~~~~----~~~g~ 222 (350)
T cd08274 173 AGVGAGETVLVTGA-SGGVGSALVQLAKRR-------GAIVIAVAGAA-KEEAV----RALGA 222 (350)
T ss_pred cCCCCCCEEEEEcC-CcHHHHHHHHHHHhc-------CCEEEEEeCch-hhHHH----HhcCC
Confidence 35678999988765 344433333333321 23577776554 54433 34665
No 493
>PRK06138 short chain dehydrogenase; Provisional
Probab=21.27 E-value=7.9e+02 Score=24.66 Aligned_cols=60 Identities=7% Similarity=0.070 Sum_probs=38.7
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~f 149 (732)
..|| +..|.|+...+++..+... ...|++.+.+...+..+...++ .+ .++.+...|..+.
T Consensus 6 k~~l-ItG~sg~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~ 65 (252)
T PRK06138 6 RVAI-VTGAGSGIGRATAKLFARE-------GARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSA 65 (252)
T ss_pred cEEE-EeCCCchHHHHHHHHHHHC-------CCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCH
Confidence 3444 4445688889998877652 2478899888877766655544 22 3456666776553
No 494
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=21.17 E-value=6.5e+02 Score=24.97 Aligned_cols=61 Identities=10% Similarity=0.008 Sum_probs=40.6
Q ss_pred CCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.+||=.+ |.|+....++..+... .-.|++.+.++.+...+.+.++..+. .+.+...|..+
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAAD-------GAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSD 65 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 45677445 5788899998888652 23589999998888777666654443 34454555543
No 495
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.96 E-value=4.3e+02 Score=28.20 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004763 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (732)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k 132 (732)
|.|.....+|..+... .-.|+..|.+++++..+..++.
T Consensus 8 G~G~mG~~iA~~la~~-------G~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 8 GAGVMGRGIAYVFAVS-------GFQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred CccHHHHHHHHHHHhC-------CCcEEEEeCCHHHHHHHHHHHH
Confidence 5577777777776542 2369999999999988876543
No 496
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.90 E-value=9.1e+02 Score=24.69 Aligned_cols=60 Identities=2% Similarity=-0.072 Sum_probs=34.8
Q ss_pred CCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.|.+||-.+ |.|+....+++.+... ...|++.+.+. ...+...++..+ .++.+...|..+
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~-------G~~vv~~~~~~--~~~~~~~~~~~~-~~~~~~~~Dl~~ 66 (251)
T PRK12481 7 NGKVAIITG-CNTGLGQGMAIGLAKA-------GADIVGVGVAE--APETQAQVEALG-RKFHFITADLIQ 66 (251)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEecCch--HHHHHHHHHHcC-CeEEEEEeCCCC
Confidence 366777555 5677788888877652 34677776543 223334444444 245556666554
No 497
>PRK12743 oxidoreductase; Provisional
Probab=20.61 E-value=5e+02 Score=26.52 Aligned_cols=60 Identities=3% Similarity=-0.063 Sum_probs=37.1
Q ss_pred CEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn-Did~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
.+||=.+ |+|+....+++.+... ...|+.+ ..+..++..+...++..+. ++.+...|..+
T Consensus 3 k~vlItG-as~giG~~~a~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 63 (256)
T PRK12743 3 QVAIVTA-SDSGIGKACALLLAQQ-------GFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSD 63 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 3555555 4677888888887652 2356555 4566777777777766653 45555566544
No 498
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=1.3e+02 Score=30.73 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=39.7
Q ss_pred ccCcEEEccccccchhhhcC-C--CCCCEEEeecCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004763 56 EIGNITRQEAVSMVPPLFLD-V--QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (732)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd-~--~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~k 132 (732)
.+|++-+-...-.++.+.|. + --|.+||.+++|--+.+..|+.. ..+...|.--|-+.+.+.-+..-..
T Consensus 4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~--------~a~~~~v~ltdgne~svrnv~ki~~ 75 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIAC--------KAPDSSVWLTDGNEESVRNVEKIRN 75 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheee--------ecCCceEEEecCCHHHHHHHHHHHh
Confidence 35666555444444444442 2 23678888886644433322221 1245678888998888876666544
Q ss_pred Hc
Q 004763 133 RM 134 (732)
Q Consensus 133 Rl 134 (732)
++
T Consensus 76 ~n 77 (201)
T KOG3201|consen 76 SN 77 (201)
T ss_pred cc
Confidence 43
No 499
>PLN00015 protochlorophyllide reductase
Probab=20.10 E-value=6.6e+02 Score=26.81 Aligned_cols=56 Identities=7% Similarity=0.014 Sum_probs=34.4
Q ss_pred cCCCChHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004763 86 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (732)
Q Consensus 86 CAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~Rl~~L~~n~kRlg~~ni~Vt~~Da~~ 148 (732)
+.|.++....++..+... +...|+..+.+..++..+.+.+... ...+.+...|..+
T Consensus 3 TGas~GIG~aia~~l~~~------G~~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~d 58 (308)
T PLN00015 3 TGASSGLGLATAKALAET------GKWHVVMACRDFLKAERAAKSAGMP-KDSYTVMHLDLAS 58 (308)
T ss_pred eCCCChHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEEecCCC
Confidence 457788888888888752 1137888888887776555544211 1245555555544
Done!