RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 004763
         (732 letters)



>2frx_A Hypothetical protein YEBU; rossmann-type
           S-adenosylmethionine-dependent methyltransfera domain;
           2.90A {Escherichia coli}
          Length = 479

 Score =  199 bits (507), Expect = 2e-56
 Identities = 74/314 (23%), Positives = 118/314 (37%), Gaps = 58/314 (18%)

Query: 2   KSLQTEVIEEG-EVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNI 60
                     G  + PI   PW      W    +   L    T E            G  
Sbjct: 51  ADFLQLTAPYGWTLTPI---PWCEEGF-WIERDNEDALPLGSTAE-HLS--------GLF 97

Query: 61  TRQEAVSMVPP--LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN-GMVIAN 117
             QEA SM+P   LF D      V+D+ AAPGSKT Q+            + N G ++AN
Sbjct: 98  YIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISA---------RMNNEGAILAN 148

Query: 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
           +    R  +L     R   +N+ +T+ + + F                           F
Sbjct: 149 EFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEM--------------------F 188

Query: 178 DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237
           D +L D PCSG+G +RK PD  + W+      + + Q ++       L+ GG +VYSTC+
Sbjct: 189 DAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248

Query: 238 MNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKH---- 293
           +N  ENEAV   +      +VE + + +  P          + +    ++     +    
Sbjct: 249 LNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGF-LH---VF--PQIYDCEG 302

Query: 294 --VRKFRRIGIVPS 305
             V + R+   +P+
Sbjct: 303 FFVARLRKTQAIPA 316



 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 13/73 (17%), Positives = 20/73 (27%)

Query: 346 DDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDP 405
           D        L  E  + + P   +   FF+A L+K   +P +                D 
Sbjct: 276 DLFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKDR 335

Query: 406 PKKLQNQDTEEVN 418
                 Q    V 
Sbjct: 336 EAGQIRQAATGVG 348


>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
           transferase; 2.28A {Enterococcus faecium}
          Length = 456

 Score =  195 bits (498), Expect = 2e-55
 Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 61/301 (20%)

Query: 1   MKSLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNI 60
           +K    ++++    E ++P P+             +     ++              G  
Sbjct: 45  LKPAGLDMVQTYHSEELQPAPYSNEGF--------LGTVNGKSFL-HQA--------GYE 87

Query: 61  TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN-GMVIANDL 119
             QE  +M+       +P   VLD+CAAPG K+ QL            +   G+++ N++
Sbjct: 88  YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAA---------QMKGKGLLVTNEI 138

Query: 120 DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDR 179
             +R  +L    +R   +N IVTNH         +                      FDR
Sbjct: 139 FPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGF--------------------FDR 178

Query: 180 VLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239
           ++ D PCSG+G  RK P+  ++W           Q +I    I +LK  G+++YSTC+  
Sbjct: 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238

Query: 240 PVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRR 299
           P ENE +++ ++     ++E + ++  V       G  +W          S   + K  R
Sbjct: 239 PEENEEIISWLVENYPVTIEEIPLTQSVS-----SGRSEW---------GSVAGLEKTIR 284

Query: 300 I 300
           I
Sbjct: 285 I 285



 Score = 36.9 bits (86), Expect = 0.019
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 357 LERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEE 416
           LE+ +R+ PH       F+A L       + +EK    + K   +     +KL  + + +
Sbjct: 279 LEKTIRIWPHKDQGEGHFVAKLTFHGQNQMHKEKKTRKKSK--VQMTKEQEKLWTEFSND 336

Query: 417 VN 418
            +
Sbjct: 337 FH 338


>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
           SCOP: c.66.1.38
          Length = 315

 Score =  190 bits (486), Expect = 4e-55
 Identities = 78/305 (25%), Positives = 124/305 (40%), Gaps = 56/305 (18%)

Query: 4   LQTEVIEEG-EVEPIRPLPWYPNNLAWHSNFSRMQLRKNQT-LERFHKFLKLENEIGNIT 61
           L   + ++G + + +   PW               L +    +    +FL      G I 
Sbjct: 59  LVKRLNKKGFQFKRV---PWAKEGF---------CLTREPFSITSTPEFLT-----GLIY 101

Query: 62  RQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121
            QEA SM PP+ LD +P   V DM AAPG KT  L +++           G++ A D+D 
Sbjct: 102 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRND--------GVIYAFDVDE 153

Query: 122 QRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVL 181
            R         R+   N+I+ +  + H                            FD++L
Sbjct: 154 NRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE---------------------FDKIL 192

Query: 182 CDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV 241
            D PC+G GT+ K P+      +        LQ+++  +G+ +LK GG +VYSTCS+ P 
Sbjct: 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE 252

Query: 242 ENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKH------VR 295
           ENE V+   L   +  VEL+ +    P L +  G+   +       L    H      + 
Sbjct: 253 ENEFVIQWALDNFD--VELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIA 310

Query: 296 KFRRI 300
           K R++
Sbjct: 311 KIRKL 315



 Score = 39.5 bits (93), Expect = 0.003
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 357 LERCMRLVPHDQNSGAFFIAVLQKV 381
           ++   RL P    +  FFIA ++K+
Sbjct: 291 IKNARRLYPDVHETSGFFIAKIRKL 315


>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
           adoMet, MULT specific, methyltransferase, transferase;
           HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
           3m6u_A* 3m6x_A*
          Length = 464

 Score =  190 bits (484), Expect = 2e-53
 Identities = 74/311 (23%), Positives = 110/311 (35%), Gaps = 59/311 (18%)

Query: 7   EVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAV 66
           E  +     P+RP+PW                 +         F       G    QE  
Sbjct: 44  EAFQRISPWPLRPIPWCQEGF---------YYPEEARPGPHPFFYA-----GLYYIQEPS 89

Query: 67  SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN-GMVIANDLDVQRCN 125
           +    + LD +P   VLD+ AAPG KT  L            +   G+++AN++D +R  
Sbjct: 90  AQAVGVLLDPKPGERVLDLAAAPGGKTTHLAA---------RMGGKGLLLANEVDGKRVR 140

Query: 126 LLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 185
            L+   +R       VT    +                             F RVL D P
Sbjct: 141 GLLENVERWGAPL-AVTQAPPRALAEAFGTY--------------------FHRVLLDAP 179

Query: 186 CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEA 245
           CSG+G  RK  +  R W       +  +Q  +  +   LL  GG +VYSTC+  P ENE 
Sbjct: 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEG 239

Query: 246 VVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLAS----HKH------VR 295
           VVA  L+       L D           PG+ +W   +  +   +    H+       + 
Sbjct: 240 VVAHFLKAHPE-FRLEDARLHPLF---APGVPEWGEGNPELLKTARLWPHRLEGEGHFLA 295

Query: 296 KFRRIGIVPSM 306
           +FR+ G   S 
Sbjct: 296 RFRKEGGAWST 306



 Score = 38.9 bits (91), Expect = 0.005
 Identities = 8/34 (23%), Positives = 11/34 (32%)

Query: 357 LERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEK 390
           L +  RL PH       F+A  +K          
Sbjct: 276 LLKTARLWPHRLEGEGHFLARFRKEGGAWSTPRL 309


>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
           structural genomics, riken structu genomics/proteomics
           initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
           3a4t_A
          Length = 274

 Score =  182 bits (465), Expect = 9e-53
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 31/226 (13%)

Query: 58  GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117
           G    Q   SM+PP+ L+ + D F+LDMCAAPG KT  L +++           G ++A 
Sbjct: 63  GYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNK--------GTIVAV 114

Query: 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
           ++   R   L     RM   N I+ N + + +                           F
Sbjct: 115 EISKTRTKALKSNINRMGVLNTIIINADMRKYK-----DYLLKNEIF------------F 157

Query: 178 DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237
           D++L D PCSG+    K  +   + ++         Q ++   GI LLK  G +VYSTCS
Sbjct: 158 DKILLDAPCSGNIIKDKNRN-VSEEDI---KYCSLRQKELIDIGIDLLKKDGELVYSTCS 213

Query: 238 MNPVENEAVVAEILRKCEGSVELVDVS-NEVPQLIHRPGLRKWKVR 282
           M   ENE V+  IL+K    VEL+ +  NE   +  + G  K  +R
Sbjct: 214 MEVEENEEVIKYILQKR-NDVELIIIKANEFKGINIKEGYIKGTLR 258



 Score = 30.6 bits (70), Expect = 1.6
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 329 VNSDEGLQQVEDVLTSADDLEEEVSDLP-----------LERCMRLVPHDQNSGAFFIAV 377
           +  +E  + ++ +L   +D+E  +               ++  +R+ P    +  FFIA 
Sbjct: 214 MEVEENEEVIKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPP---NEPFFIAK 270

Query: 378 LQKV 381
           L+K+
Sbjct: 271 LRKI 274


>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
           structural genomics, structural genomics consortium,
           SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
          Length = 309

 Score =  174 bits (443), Expect = 3e-49
 Identities = 60/313 (19%), Positives = 100/313 (31%), Gaps = 55/313 (17%)

Query: 7   EVIEEGEVEPIR--PLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLEN----EIGNI 60
           +V++  + +           ++L        +       L  F     L        G++
Sbjct: 25  DVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHL 84

Query: 61  TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120
             Q+  S +P + LD  P   V+D CAAPG+KT  L  ++           G + A DLD
Sbjct: 85  ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK--------NQGKIFAFDLD 136

Query: 121 VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRV 180
            +R   +     R   +   +   +                SD                +
Sbjct: 137 AKRLASMATLLARAGVSCCELAEEDFLAVS----------PSDPRYHE--------VHYI 178

Query: 181 LCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQI---AMRGISLLKVGGRIVY 233
           L D  CSG G   +  +              + L   Q +    A+          R+VY
Sbjct: 179 LLDPSCSGSGMPSRQLEE--PGAGTPSPVRLHALAGFQQRALCHALT----FPSLQRLVY 232

Query: 234 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKH 293
           STCS+   ENE VV + L++  G+  L       P      GL  +   +  +  +    
Sbjct: 233 STCSLCQEENEDVVRDALQQNPGAFRLAPALPAWP----HRGLSTFPGAEHCLRASPETT 288

Query: 294 ------VRKFRRI 300
                 V    R+
Sbjct: 289 LSSGFFVAVIERV 301



 Score = 40.4 bits (95), Expect = 0.002
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 329 VNSDEGLQQVEDVLTSADDLEEEVSDLP------------LERCMRLVPHDQNSGAFFIA 376
           +  +E    V D L            LP             E C+R  P    S  FF+A
Sbjct: 237 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 296

Query: 377 VLQKVS 382
           V+++V 
Sbjct: 297 VIERVE 302


>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
           methyltransferase, structural genomics, NPPSFA; HET:
           SFG; 2.55A {Pyrococcus horikoshii}
          Length = 450

 Score =  158 bits (403), Expect = 3e-42
 Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 30/223 (13%)

Query: 58  GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117
           G I  QE  S V  + LD +P   V+D+ AAPG KT  L E++           G + A 
Sbjct: 239 GKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNK--------GKIYAF 290

Query: 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
           D+D  R   L    KRM    +     +A+  P     +                   + 
Sbjct: 291 DVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEE-------------------VA 331

Query: 178 DRVLCDVPCSGDGTLRKAPDI-WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236
           D+VL D PC+  GT+ K P++ WR     +   +  LQ ++      L+K GGR++Y+TC
Sbjct: 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINE-MSQLQRELLESAARLVKPGGRLLYTTC 390

Query: 237 SMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKW 279
           S+   ENE  +   L       +LV + +          +R W
Sbjct: 391 SIFKEENEKNIRWFLNVHPE-FKLVPLKSPYDPGFLEGTMRAW 432



 Score = 38.4 bits (90), Expect = 0.007
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 329 VNSDEGLQQVEDVLT-----SADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKV 381
           +  +E  + +   L          L+       LE  MR  PH  ++  FF A+L+K 
Sbjct: 392 IFKEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKS 449


>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
           methyltransferase-fold, RNA-binding domain; 1.65A
           {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
          Length = 429

 Score =  151 bits (383), Expect = 8e-40
 Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 31/197 (15%)

Query: 58  GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117
           G +T Q+A +     +L  Q    +LD+CAAPG KT  +LE+          P   V+A 
Sbjct: 226 GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEV---------APEAQVVAV 276

Query: 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
           D+D QR + +    KR+    +  T  +                 D    S+    Q  F
Sbjct: 277 DIDEQRLSRVYDNLKRL---GMKATVKQG----------------DGRYPSQWCGEQQ-F 316

Query: 178 DRVLCDVPCSGDGTLRKAPDI-WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236
           DR+L D PCS  G +R+ PDI W + +  +   L  LQ +I       LK GG +VY+TC
Sbjct: 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPE-LAQLQSEILDAIWPHLKTGGTLVYATC 375

Query: 237 SMNPVENEAVVAEILRK 253
           S+ P EN   +   L++
Sbjct: 376 SVLPEENSLQIKAFLQR 392



 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 329 VNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQK 380
           V  +E   Q++  L    D E   +  P +   + +P  +    FF A L K
Sbjct: 377 VLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 428


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 101/686 (14%), Positives = 195/686 (28%), Gaps = 214/686 (31%)

Query: 30  HSNF--SRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCA 87
           H +F     Q +    L  F      +  + N   ++   M   +    + DH ++    
Sbjct: 6   HMDFETGEHQYQYKDILSVF-----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--K 58

Query: 88  APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEA 146
              S T +L   +                 ++       L+   K      +++   +  
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMV----QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL 206
           Q       N+ F+  +   +       +L   + L +        LR A       NV +
Sbjct: 115 QRDRLYNDNQVFAKYN---VSRLQPYLKL--RQALLE--------LRPAK------NVLI 155

Query: 207 ----GNG--------LHSLQVQIAM-RGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253
               G+G          S +VQ  M   I  L +        C+      E V+  + + 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK------NCN----SPETVLEMLQKL 205

Query: 254 C----EGSVELVDVSNEVPQLIH--RPGLR---KWK--------VRDKGIWLASHKHVRK 296
                       D S+ +   IH  +  LR   K K        + +  +   + K    
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQ--NAKAWNA 261

Query: 297 F----------RRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGL--QQVEDVLTS 344
           F          R   +   +  + ++H            ++  +    L   +V+ +L  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTH------------ISLDHHSMTLTPDEVKSLLLK 309

Query: 345 ADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPV------VQE--------K 390
              L+    DLP E                       +P  +      +++        K
Sbjct: 310 Y--LDCRPQDLPREVL-------------------TTNPRRLSIIAESIRDGLATWDNWK 348

Query: 391 HINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLA---DGTDEKDPEGSLEANSIDNEDG 447
           H+N  +K+    +     L   +  E   M   L+          P   L          
Sbjct: 349 HVN-CDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPP--SAHIPTILLS--------- 393

Query: 448 AAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINS 507
                  L    V   +  V VN   K      K  L ++ + K  +  I      +   
Sbjct: 394 -------LIWFDVIKSDVMVVVN---KLH----KYSL-VEKQPK--ESTISIPSIYLELK 436

Query: 508 IKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALD---LNFRVGQQLKITSVG 564
           +K    +++ + L   +V    D   + + +     +   LD    +  +G  LK     
Sbjct: 437 VK----LENEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHP 487

Query: 565 LKM-----------FERQTSREGNSAPCSFRISSEGLPVIL------PYITKQI-----L 602
            +M           F  Q  R  ++A  +   S   L  +       PYI         L
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNA---SGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 603 YASLVDFKHLLQYKTI----KFADFV 624
             +++DF  L + +      K+ D +
Sbjct: 545 VNAILDF--LPKIEENLICSKYTDLL 568


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 120/768 (15%), Positives = 210/768 (27%), Gaps = 311/768 (40%)

Query: 3   SLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITR 62
           S +   +  G +E +  +   P    + ++    QL+     E+F+K   L         
Sbjct: 5   STRPLTLSHGSLEHVLLV---PTASFFIAS----QLQ-----EQFNK--ILPEPTEGFAA 50

Query: 63  QEAVSMVPPL---FLDVQPDHFVLDMC-AAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118
            +  +    L   FL      +V  +   +   +  Q+L +         L       ND
Sbjct: 51  DDEPTTPAELVGKFL-----GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-----ND 100

Query: 119 LDVQRCNLLIHQTKRMCTANLIVTNH-EAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
           +      LL      +     ++ N+  A+       +K  +SA              LF
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA--------------LF 146

Query: 178 DRVLCDVPCSGDGTLRKAPDIWRKWNV--GLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235
             V       G+  L           +  G GN     +         L     R +Y T
Sbjct: 147 RAV-----GEGNAQL---------VAIFGGQGNTDDYFE--------EL-----RDLYQT 179

Query: 236 CSMNPVENEAVVAEILRKCEGSV-ELVDVSNEVPQLIHRPGL--RKWKVRDKGI-----W 287
                     +V ++++    ++ EL+  + +  ++  + GL   +W + +        +
Sbjct: 180 -------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNILEW-LENPSNTPDKDY 230

Query: 288 LASHKHVRKFRRIGIVPSMFP-SG---SSHMDAT----DIEPKHGNVTDVNSDEGL-QQV 338
           L S            +P   P  G    +H   T       P  G +       G     
Sbjct: 231 LLS------------IPISCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLK--GATGHS 274

Query: 339 EDVLT-----SADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHIN 393
           + ++T       D  E       + + + +         FFI V           E +  
Sbjct: 275 QGLVTAVAIAETDSWESFFVS--VRKAITV--------LFFIGV--------RCYEAY-- 314

Query: 394 PEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPD 453
                 P    PP  L+                             +S++N +G    P 
Sbjct: 315 ------PNTSLPPSILE-----------------------------DSLENNEGV---PS 336

Query: 454 P-LTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINSIKTFY 512
           P L+                          + Q+Q     ++     N            
Sbjct: 337 PMLSIS---------------------NLTQEQVQ---DYVNK---TNSH---------- 359

Query: 513 GIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKD--ALDLNFRVGQQLKITSVGLKMFER 570
            +    Q+   LV  NG  N V     VS   +    L+L  R   + K  S GL     
Sbjct: 360 -LPAGKQVEISLV--NGAKNLV-----VSGPPQSLYGLNLTLR---KAKAPS-GLD---- 403

Query: 571 QTSREGNSAPCSFR---ISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAE 627
           Q SR     P S R    S+  LPV  P+              H                
Sbjct: 404 Q-SR----IPFSERKLKFSNRFLPVASPF--------------H---------------- 428

Query: 628 FGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAI-----GCWKGRASLSVMVTAIDC 682
                S L++    ++     + + N +  +A  I I             LS  ++    
Sbjct: 429 -----SHLLVPASDLINK---DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS---- 476

Query: 683 QELLERLLMRLEI--EK--------------------GDLVQENALGT 708
            E +   ++RL +  E                     G L   N  GT
Sbjct: 477 -ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523



 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 61/182 (33%)

Query: 140  IVTN---HEAQHFPGCRANK---NFSSASDKGIESESNMGQLLF---DRVLCDVPCSGD- 189
            IV N   +   HF G +  +   N+S+   + I       + +F   +          + 
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723

Query: 190  GTLR-------------KAP-DIWRKWNVGLGN----GLHSL-----------------Q 214
            G L              KA  +  +   +   +    G HSL                  
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-HSLGEYAALASLADVMSIESL 1782

Query: 215  VQI-AMRGISLLKV-----GGRIVYSTCSMNP------VENEA---VVAEILRKCEGSVE 259
            V++   RG+++         GR  Y   ++NP         EA   VV  + ++    VE
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842

Query: 260  LV 261
            +V
Sbjct: 1843 IV 1844



 Score = 39.3 bits (91), Expect = 0.006
 Identities = 53/285 (18%), Positives = 87/285 (30%), Gaps = 106/285 (37%)

Query: 490  WKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRN---------GDTNRVKRIYYV 540
            W   D    F D          YG    F +   +V  N         G+  +  R  Y 
Sbjct: 1646 WNRADN--HFKDT---------YG----FSIL-DIVINNPVNLTIHFGGEKGKRIRENYS 1689

Query: 541  SKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITK- 599
            +   +  +D   +            K+F+       +S   +FR S +GL   L   T+ 
Sbjct: 1690 AMIFETIVDGKLKT----------EKIFKEINE---HSTSYTFR-SEKGL---L-SATQF 1731

Query: 600  -Q--ILYASLVDFKHLLQYKTIKFADFVDA-----EFGEKASKLMMGCC----------V 641
             Q  +       F+  L+ K +  AD   A     E+    + L               V
Sbjct: 1732 TQPALTLMEKAAFE-DLKSKGLIPADATFAGHSLGEY----AAL---ASLADVMSIESLV 1783

Query: 642  IVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVM------VTAIDCQELLERLLMRLEI 695
             V+   G  +   +  D          GR++  ++      V A   QE L+ ++ R+  
Sbjct: 1784 EVVFYRGMTMQVAVPRDEL--------GRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835

Query: 696  EKGDLVQENALGTDEVQEEMNDN---------GKEEPESLEVAVN 731
              G LV E            N N         G  +  +L+   N
Sbjct: 1836 RTGWLV-EIV----------NYNVENQQYVAAG--DLRALDTVTN 1867


>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
           structural genomics, PSI-2, protein structure
           initiative; 2.21A {Corynebacterium diphtheriae}
          Length = 178

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 63/213 (29%)

Query: 58  GNITRQE--AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVI 115
           G +T+Q   A+++     L  +P   + D+    GS   + L          + P    +
Sbjct: 6   GQLTKQHVRALAIS---ALAPKPHETLWDIGGGSGSIAIEWLR---------STPQTTAV 53

Query: 116 ANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL 175
             ++  +R   ++     +  ++ I             A + F    D            
Sbjct: 54  CFEISEERRERILSNAINLGVSDRIAVQQG--------APRAFDDVPDN----------- 94

Query: 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235
             D +                       +G G     +      R    L VGGR+V + 
Sbjct: 95  -PDVIF----------------------IGGGLTAPGVFAAAWKR----LPVGGRLVANA 127

Query: 236 CSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
            ++   E+E ++  + ++  G++    +S+E  
Sbjct: 128 VTV---ESEQMLWALRKQFGGTISSFAISHEHT 157


>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
           structural genomics structure initiative, PSI; HET: SAM;
           2.20A {Clostridium thermocellum atcc 27405}
          Length = 197

 Score = 35.7 bits (82), Expect = 0.028
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 43/176 (24%)

Query: 74  LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133
           + V+    V+D     G+ T  L  ++          NG V   D+  +     I  T +
Sbjct: 18  MFVKEGDTVVDATCGNGNDTAFLASLVG--------ENGRVFGFDIQDK----AIANTTK 65

Query: 134 MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 193
             T   ++                     +     +  +  ++F+        SGD ++ 
Sbjct: 66  KLTDLNLIDRVTLIK----------DGHQNMDKYIDCPVKAVMFN---LGYLPSGDHSIS 112

Query: 194 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI---VYSTCSMNPVENEAV 246
             P+   +             +  AM    LL  GG I   +Y        E E V
Sbjct: 113 TRPETTIQ------------ALSKAME---LLVTGGIITVVIYYGGDTGFEEKEKV 153


>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
           [decarboxylating]; alpha and beta protein (A/B) class;
           HET: MES; 2.30A {Methanocaldococcus jannaschii}
          Length = 183

 Score = 34.5 bits (80), Expect = 0.068
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 18/78 (23%)

Query: 194 KAPDIWRKWN-----VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV--ENEAV 246
           +A D+  K       +G    +  +   +        K    IV      N +  EN A 
Sbjct: 91  RAEDVLDKLEFNKAFIGGTKNIEKIIEILD------KKKINHIV-----ANTIVLENAAK 139

Query: 247 VAEILRKCEGSVELVDVS 264
           +         +V+ V+V 
Sbjct: 140 IINEFESRGYNVDAVNVF 157


>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
           genomics, structural genomics consortium, SGC; HET: SAM;
           1.76A {Homo sapiens}
          Length = 196

 Score = 33.7 bits (78), Expect = 0.11
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 77  QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119
           +P   VLD  AAPG+ +   ++ ++ +    + P G V+  DL
Sbjct: 21  RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDL 63


>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
           genomics, beta barrel, rossmann fold, tetramer; HET:
           SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
           c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
          Length = 192

 Score = 33.5 bits (77), Expect = 0.15
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264
             LK GGRI+ +      +E +    E LR     V + +++
Sbjct: 122 DKLKPGGRIIVTAIL---LETKFEAMECLRDLGFDVNITELN 160


>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
           metabolism, S-adenosyl-methionine; 1.80A {Geobacter
           metallireducens}
          Length = 204

 Score = 31.4 bits (71), Expect = 0.64
 Identities = 41/215 (19%), Positives = 66/215 (30%), Gaps = 67/215 (31%)

Query: 54  ENEIGNITRQE--AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
                 IT+QE  AV++     L +Q D  + D+ A   S + +   ++          N
Sbjct: 17  ATAKKLITKQEVRAVTLS---KLRLQDDLVMWDIGAGSASVSIEASNLMP---------N 64

Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
           G + A + + Q    +    K+    N+ +    A                         
Sbjct: 65  GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE----------------------- 101

Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
                    L D+P          PD  R +  G G  L  +   +  R    LK  G I
Sbjct: 102 --------GLDDLPD---------PD--RVFIGGSGGMLEEIIDAVDRR----LKSEGVI 138

Query: 232 VYSTCSMNPV--ENEAVVAEILRKCEGSVELVDVS 264
           V     +N V  +      E L      VE+  V+
Sbjct: 139 V-----LNAVTLDTLTKAVEFLEDHGYMVEVACVN 168


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.93
 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 6/25 (24%)

Query: 556 QQLKITSVGLKMFERQTSREGNSAP 580
           Q LK     LK++        +SAP
Sbjct: 20  QALKKLQASLKLY------ADDSAP 38


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 31.4 bits (71), Expect = 1.3
 Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 58/186 (31%)

Query: 255  EGSVE------LVDVSNEVPQLIHRPGLRKW-------KVRDKGIWLASHKHVRKFRRIG 301
            EG VE       +   N   +     G   W        V DK +       + +    G
Sbjct: 849  EGCVEMAWIMGFISYHNGNLKGRPYTG---WVDSKTKEPVDDKDVKAKYETSILE--HSG 903

Query: 302  IVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCM 361
            I                IEP+  N  +    E +Q+V       +DLE   +        
Sbjct: 904  IRL--------------IEPELFNGYNPEKKEMIQEVI----VEEDLEPFEASKETAEQF 945

Query: 362  RL-------VPHDQNSGAFFIAVLQ-------KVSPLPVV---Q-EKHINPEEKMLPRND 403
            +        +     +G + + +L+       K      +   Q     N +   +  + 
Sbjct: 946  KHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDI 1005

Query: 404  ----DP 405
                DP
Sbjct: 1006 ISQVDP 1011


>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
           structural genomics, protein structure initiative; HET:
           SAM; 2.72A {Aquifex aeolicus}
          Length = 219

 Score = 30.0 bits (68), Expect = 2.0
 Identities = 28/247 (11%), Positives = 62/247 (25%), Gaps = 68/247 (27%)

Query: 74  LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133
             ++    VLD+    G     L +++           G V A D+  +  N    +  +
Sbjct: 33  FGLKEGMTVLDVGTGAGFYLPYLSKMVG--------EKGKVYAIDVQEEMVNYAWEKVNK 84

Query: 134 MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 193
           +   N+ V   E    P           +               D +             
Sbjct: 85  LGLKNVEVLKSEENKIP-------LPDNT--------------VDFIF-----MAFT-FH 117

Query: 194 KAPDIWRKWNVGLGNGLHSLQVQIAMRGIS-LLKVGGRIVYSTCSMNPVENEAVVAEILR 252
           +  +                     +  +  + K    +          +      E+  
Sbjct: 118 ELSEP-----------------LKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYS 160

Query: 253 KCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLA-SH-KHVRKFRRIGIVPSMF--P 308
           +            EV  ++   G+R  +V + G +    +   V++     ++   F  P
Sbjct: 161 E-----------WEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVKQEEENPLMNVPFKIP 209

Query: 309 SGSSHMD 315
            G  H  
Sbjct: 210 PGEGHHH 216


>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
           intermolecular contacts, R specificity, tetramer,
           disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
           3lga_A* 3lhd_C*
          Length = 255

 Score = 28.8 bits (64), Expect = 6.3
 Identities = 29/215 (13%), Positives = 56/215 (26%), Gaps = 67/215 (31%)

Query: 72  LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131
            +  + P  F+++     G+ T  L  I+         P G V++ ++      L     
Sbjct: 87  AYAGISPGDFIVEAGVGSGALTLFLANIVG--------PEGRVVSYEIREDFAKLAWENI 138

Query: 132 KRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191
           K     + +    +  +      N                      D V+ D+P      
Sbjct: 139 KWAGFDDRVTIKLKDIYEGIEEEN---------------------VDHVILDLP------ 171

Query: 192 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 251
             +   +                          LK GG  V  T   N V     + E L
Sbjct: 172 --QPERVVEHA-------------------AKALKPGGFFVAYTPCSNQVMR---LHEKL 207

Query: 252 RKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGI 286
           R+ +           V        +   +V+ + +
Sbjct: 208 REFKDYFMKPRTI-NV-------LVFDQEVKKECM 234


>1yb2_A Hypothetical protein TA0852; structural genomics,
           methyltransferase, thermoplasma acidoph midwest center
           for structural genomics, MCSG; 2.01A {Thermoplasma
           acidophilum} SCOP: c.66.1.13
          Length = 275

 Score = 28.5 bits (63), Expect = 6.5
 Identities = 7/71 (9%), Positives = 22/71 (30%), Gaps = 8/71 (11%)

Query: 74  LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133
             ++P   +L++    G+ +  +L  ++          G +   + D       +     
Sbjct: 106 CGLRPGMDILEVGVGSGNMSSYILYALN--------GKGTLTVVERDEDNLKKAMDNLSE 157

Query: 134 MCTANLIVTNH 144
                 + T+ 
Sbjct: 158 FYDIGNVRTSR 168


>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
           tungstoenzyme, tungsten containing protein, hypertherm
           oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus}
           SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
          Length = 619

 Score = 28.9 bits (64), Expect = 6.9
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 244 EAVVAEILRKCEGSVELVDVSNE-VPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGI 302
           +      L       EL +++ E V  +  + G   + +  KG+ ++ + +   +  + +
Sbjct: 368 KGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGY-NCYIYPAMAL 426

Query: 303 VPSMFPSGSSHMDATDIEP 321
                  G+ H +A  I  
Sbjct: 427 AYGTSAIGAHHKEAWVIAW 445


>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
           structural genomics, joint center for structural
           genomics; HET: MSE SAM; 1.15A {Methanococcus
           maripaludis}
          Length = 219

 Score = 28.6 bits (64), Expect = 6.9
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 225 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS------NEVPQLIHRPGLRK 278
           LK GG+        N    +++ AE++RK     E    +           ++   G+  
Sbjct: 138 LKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197

Query: 279 WKV--RDKGIWLASHK 292
           +++   D+G W+   K
Sbjct: 198 YEIILGDEGFWIIISK 213


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,969,677
Number of extensions: 671152
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 42
Length of query: 732
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 631
Effective length of database: 3,881,772
Effective search space: 2449398132
Effective search space used: 2449398132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.7 bits)