BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004764
         (732 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TVR|A Chain A, Crystal Structure Of Streptomyces Coelicolor Polyketide
           AromataseCYCLASE WHIE-Orfvi
          Length = 173

 Score = 42.4 bits (98), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 350 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 406
           IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 23  ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 82

Query: 407 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 465
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 83  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 137

Query: 466 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 497
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 138 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 169


>pdb|3TL1|A Chain A, Crystal Structure Of The Streptomyces Coelicolor Whie
           Orfvi Polyketide AromataseCYCLASE
 pdb|3TL1|B Chain B, Crystal Structure Of The Streptomyces Coelicolor Whie
           Orfvi Polyketide AromataseCYCLASE
          Length = 159

 Score = 42.4 bits (98), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 350 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 406
           IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 9   ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 68

Query: 407 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 465
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 69  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 123

Query: 466 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 497
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 124 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 155


>pdb|2KF2|A Chain A, Solution Nmr Structure Of Of Streptomyces Coelicolor
           Polyketide Cyclase Sco5315. Northeast Structural
           Genomics Consortium Target Rr365
          Length = 167

 Score = 40.0 bits (92), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 350 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 406
           IT+ AP+  VW +    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 9   ITIAAPMELVWTMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 68

Query: 407 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 465
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 69  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 123

Query: 466 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 497
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 124 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 155


>pdb|3RCO|A Chain A, Crystal Structure Of A Conserved Motif In Human Tdrd7
 pdb|3RCO|B Chain B, Crystal Structure Of A Conserved Motif In Human Tdrd7
          Length = 89

 Score = 30.8 bits (68), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 397 KGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWL-FEQLG 442
           +G+L   L ++++  + + H+  ++  +++G++ S  G W+ F+QLG
Sbjct: 6   QGMLEGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQLG 52


>pdb|2RES|A Chain A, Tetracenomycin AroCYC MUTANT R69A
          Length = 173

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 349 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 387
           SI V AP   VW+V    E  PE+    A ++IL ++ +
Sbjct: 11  SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGD 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,771,223
Number of Sequences: 62578
Number of extensions: 833868
Number of successful extensions: 1900
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1897
Number of HSP's gapped (non-prelim): 5
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)