BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004764
         (732 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02572|CYPC_STRCN Putative polyketide cyclase OS=Streptomyces cyaneus GN=curF PE=4
           SV=1
          Length = 152

 Score = 43.5 bits (101), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 350 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 406
           IT+ APV  VW++    E  PE+    A  ++LSRE N V     +     G ++  +  
Sbjct: 9   ITIAAPVDLVWDMTNDLERWPELFSEYASCEVLSREANTVTFRLTMHPDENGKVWSWVSE 68

Query: 407 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 465
           R      ++ +  +   +VE G F+     W +E+     T + ++ +  M+ ++ + +A
Sbjct: 69  RTA----DREKLVVRARRVETGPFEYMNIVWEYEET-PDGTRMHWTQDFAMKPDAPVDDA 123

Query: 466 IMEEVIYEDLPSNLCAIRDYVEK 488
            M ++I  + P  +  IRD +E+
Sbjct: 124 GMTDIINRNSPIQMALIRDRIEE 146


>sp|P23154|CYPC_STRCO Putative polyketide cyclase OS=Streptomyces coelicolor (strain ATCC
           BAA-471 / A3(2) / M145) GN=SCO5315 PE=1 SV=1
          Length = 159

 Score = 42.4 bits (98), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 350 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 406
           IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 9   ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 68

Query: 407 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 465
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 69  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 123

Query: 466 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 497
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 124 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 155


>sp|Q05368|CYPC_STRHA Putative polyketide cyclase (Fragment) OS=Streptomyces halstedii
           GN=sch4 PE=4 SV=1
          Length = 109

 Score = 33.9 bits (76), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 350 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 406
           I + AP+  VW++    E  P +    A ++IL RE ++VR    +    +G ++  +  
Sbjct: 9   IVIAAPLDLVWDMTNDVENWPRLFSEYASAEILEREGDRVRFRLTMHPDDEGRVWSWVSE 68

Query: 407 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQ 440
           RV     ++    +   +VE G F     +W++EQ
Sbjct: 69  RVA----DRASLTVRAHRVETGPFQFMDIQWVYEQ 99


>sp|O13651|SYIC_SCHPO Isoleucine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=irs1 PE=3 SV=1
          Length = 1064

 Score = 33.1 bits (74), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 345 CVVASITVKAPVSEVWNVMTAYETLPE-----IVPNLAISKILSRENNKVRILQEGCKGL 399
            VVA  ++  P        T   TLP      + P+L   KIL +++NK  IL E C G+
Sbjct: 200 IVVAFQSISDPEVSFLAWTTTPWTLPSNLALAVHPDLQYIKILDKDSNKKYILMESCLGI 259

Query: 400 LY 401
           LY
Sbjct: 260 LY 261


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,460,861
Number of Sequences: 539616
Number of extensions: 12590433
Number of successful extensions: 39446
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 38852
Number of HSP's gapped (non-prelim): 585
length of query: 732
length of database: 191,569,459
effective HSP length: 125
effective length of query: 607
effective length of database: 124,117,459
effective search space: 75339297613
effective search space used: 75339297613
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)