Query 004764
Match_columns 732
No_of_seqs 273 out of 1280
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 12:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08866 SRPBCC_11 Ligand-bindi 99.9 1.1E-21 2.3E-26 184.4 20.1 144 96-242 1-144 (144)
2 cd08866 SRPBCC_11 Ligand-bindi 99.9 1.2E-20 2.6E-25 177.3 19.3 141 346-488 1-144 (144)
3 PRK10724 hypothetical protein; 99.8 1.1E-19 2.4E-24 177.7 18.0 145 341-492 12-157 (158)
4 cd07813 COQ10p_like Coenzyme Q 99.8 2.6E-19 5.6E-24 168.1 16.7 135 347-488 2-137 (138)
5 cd07813 COQ10p_like Coenzyme Q 99.8 1.1E-18 2.5E-23 163.7 15.5 136 97-242 2-137 (138)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.8 2.8E-17 6.1E-22 154.1 18.0 137 347-488 2-142 (142)
7 cd08860 TcmN_ARO-CYC_like N-te 99.8 2.8E-17 6.2E-22 158.4 18.1 139 345-489 2-145 (146)
8 PF03364 Polyketide_cyc: Polyk 99.7 2.6E-17 5.5E-22 152.4 13.5 127 102-237 1-130 (130)
9 PRK10724 hypothetical protein; 99.7 5.7E-17 1.2E-21 158.6 16.2 140 95-245 16-156 (158)
10 PF03364 Polyketide_cyc: Polyk 99.7 9.5E-17 2.1E-21 148.5 14.5 126 352-483 1-130 (130)
11 COG2867 Oligoketide cyclase/li 99.7 7.6E-17 1.6E-21 153.8 13.1 143 344-492 2-145 (146)
12 cd08861 OtcD1_ARO-CYC_like N-t 99.7 3.7E-16 8E-21 146.5 16.8 137 96-242 1-142 (142)
13 cd07819 SRPBCC_2 Ligand-bindin 99.7 2.5E-15 5.5E-20 139.3 18.6 137 95-240 3-140 (140)
14 cd08860 TcmN_ARO-CYC_like N-te 99.7 2.4E-15 5.3E-20 145.0 17.6 138 95-243 2-145 (146)
15 cd07819 SRPBCC_2 Ligand-bindin 99.7 3.2E-15 6.8E-20 138.7 17.4 136 345-486 3-140 (140)
16 cd07817 SRPBCC_8 Ligand-bindin 99.6 3.8E-14 8.3E-19 131.5 15.6 135 346-487 2-138 (139)
17 PF10604 Polyketide_cyc2: Poly 99.5 3E-12 6.5E-17 118.1 22.2 138 343-487 1-139 (139)
18 cd08865 SRPBCC_10 Ligand-bindi 99.5 4.9E-13 1.1E-17 123.0 16.6 135 347-488 2-140 (140)
19 cd08876 START_1 Uncharacterize 99.5 1.5E-12 3.2E-17 129.7 19.7 158 78-240 24-194 (195)
20 cd07817 SRPBCC_8 Ligand-bindin 99.5 4.2E-13 9E-18 124.5 14.5 133 96-241 2-138 (139)
21 cd07818 SRPBCC_1 Ligand-bindin 99.5 1.2E-12 2.7E-17 124.0 16.8 139 344-488 2-150 (150)
22 cd08862 SRPBCC_Smu440-like Lig 99.5 3E-12 6.5E-17 118.6 17.4 136 345-488 2-138 (138)
23 cd07821 PYR_PYL_RCAR_like Pyra 99.5 2.4E-12 5.1E-17 118.7 16.4 134 345-487 2-140 (140)
24 cd07821 PYR_PYL_RCAR_like Pyra 99.5 1.6E-12 3.4E-17 119.9 14.9 136 95-241 2-140 (140)
25 cd05018 CoxG Carbon monoxide d 99.4 4.8E-12 1E-16 117.9 16.4 137 345-487 2-144 (144)
26 cd07824 SRPBCC_6 Ligand-bindin 99.4 3.1E-12 6.6E-17 122.0 15.4 133 345-485 2-145 (146)
27 cd08865 SRPBCC_10 Ligand-bindi 99.4 8.2E-12 1.8E-16 114.9 16.8 136 96-242 1-140 (140)
28 cd05018 CoxG Carbon monoxide d 99.4 1.8E-11 3.8E-16 114.1 16.6 135 95-240 2-143 (144)
29 PF10604 Polyketide_cyc2: Poly 99.4 4.6E-11 1E-15 110.2 19.2 134 95-241 3-139 (139)
30 cd07824 SRPBCC_6 Ligand-bindin 99.4 1.4E-11 3E-16 117.4 15.8 136 95-239 2-145 (146)
31 cd07822 SRPBCC_4 Ligand-bindin 99.4 3.9E-11 8.4E-16 110.7 17.3 137 346-487 2-141 (141)
32 cd07818 SRPBCC_1 Ligand-bindin 99.3 2.1E-11 4.7E-16 115.5 14.3 136 95-242 3-150 (150)
33 cd08862 SRPBCC_Smu440-like Lig 99.3 4.5E-11 9.8E-16 110.8 15.6 134 95-242 2-138 (138)
34 cd08876 START_1 Uncharacterize 99.3 1.5E-10 3.4E-15 115.3 17.6 142 343-487 40-195 (195)
35 cd07820 SRPBCC_3 Ligand-bindin 99.3 1.2E-10 2.7E-15 109.8 15.9 106 347-457 2-112 (137)
36 COG2867 Oligoketide cyclase/li 99.2 7.7E-11 1.7E-15 113.0 12.0 141 95-245 3-144 (146)
37 cd07814 SRPBCC_CalC_Aha1-like 99.2 3.2E-10 6.9E-15 105.0 15.4 135 346-488 2-139 (139)
38 COG5637 Predicted integral mem 99.2 1.6E-10 3.5E-15 113.6 12.8 138 344-489 70-211 (217)
39 cd07812 SRPBCC START/RHO_alpha 99.2 8.4E-10 1.8E-14 98.4 16.1 135 347-485 2-140 (141)
40 cd07823 SRPBCC_5 Ligand-bindin 99.2 5.6E-10 1.2E-14 106.4 15.7 134 347-487 2-145 (146)
41 cd07823 SRPBCC_5 Ligand-bindin 99.2 4.8E-10 1E-14 106.9 15.1 136 96-241 1-145 (146)
42 cd07822 SRPBCC_4 Ligand-bindin 99.1 1.5E-09 3.2E-14 100.2 16.1 137 96-241 2-141 (141)
43 cd08906 START_STARD3-like Chol 99.1 3.1E-09 6.7E-14 108.7 18.5 158 79-242 34-208 (209)
44 cd08905 START_STARD1-like Chol 99.1 2.8E-09 6.1E-14 108.8 18.0 157 78-242 33-208 (209)
45 cd07825 SRPBCC_7 Ligand-bindin 99.1 1E-09 2.3E-14 103.1 13.6 135 345-487 1-144 (144)
46 cd07812 SRPBCC START/RHO_alpha 99.1 3.1E-09 6.7E-14 94.8 15.8 136 96-239 1-140 (141)
47 cd07820 SRPBCC_3 Ligand-bindin 99.1 1.6E-09 3.4E-14 102.3 14.2 115 96-221 1-120 (137)
48 cd08868 START_STARD1_3_like Ch 99.1 5.7E-09 1.2E-13 106.0 16.9 164 78-242 31-207 (208)
49 cd07814 SRPBCC_CalC_Aha1-like 99.0 8.3E-09 1.8E-13 95.5 14.7 135 96-242 2-139 (139)
50 cd08911 START_STARD7-like Lipi 99.0 4.8E-08 1E-12 99.6 19.1 161 78-242 28-206 (207)
51 cd08877 START_2 Uncharacterize 98.9 3.2E-08 6.8E-13 101.1 17.4 161 78-242 29-214 (215)
52 cd08874 START_STARD9-like C-te 98.9 6.4E-08 1.4E-12 99.0 18.1 145 78-230 29-194 (205)
53 cd08870 START_STARD2_7-like Li 98.8 1.8E-07 4E-12 95.3 18.7 162 78-242 29-208 (209)
54 cd08871 START_STARD10-like Lip 98.8 1.5E-07 3.3E-12 96.6 17.8 162 78-244 30-204 (222)
55 cd07825 SRPBCC_7 Ligand-bindin 98.8 9.4E-08 2E-12 89.8 13.2 136 95-241 1-144 (144)
56 cd07816 Bet_v1-like Ligand-bin 98.7 8.8E-07 1.9E-11 85.6 18.8 111 345-458 2-121 (148)
57 cd08872 START_STARD11-like Cer 98.7 6.1E-07 1.3E-11 93.6 18.7 163 78-243 33-227 (235)
58 cd08910 START_STARD2-like Lipi 98.7 3.5E-07 7.6E-12 93.4 16.4 155 78-242 32-206 (207)
59 cd08869 START_RhoGAP C-termina 98.7 3.3E-07 7.1E-12 92.9 15.9 154 78-238 26-192 (197)
60 cd08903 START_STARD5-like Lipi 98.7 6.4E-07 1.4E-11 91.6 17.2 159 78-241 29-206 (208)
61 KOG3177 Oligoketide cyclase/li 98.7 1.4E-07 2.9E-12 95.2 11.6 143 345-494 69-216 (227)
62 cd08906 START_STARD3-like Chol 98.7 6.3E-07 1.4E-11 91.8 16.3 141 344-488 49-208 (209)
63 cd08913 START_STARD14-like Lip 98.6 1.4E-06 3E-11 91.2 17.9 143 78-231 66-227 (240)
64 cd08905 START_STARD1-like Chol 98.6 8.4E-07 1.8E-11 90.7 14.8 141 344-488 49-208 (209)
65 cd08867 START_STARD4_5_6-like 98.6 2.5E-06 5.4E-11 86.7 18.1 156 78-240 29-205 (206)
66 cd00177 START Lipid-binding ST 98.6 4.7E-06 1E-10 81.4 19.0 156 78-238 22-190 (193)
67 cd08877 START_2 Uncharacterize 98.6 8.4E-07 1.8E-11 90.6 14.1 142 343-488 45-214 (215)
68 COG3427 Carbon monoxide dehydr 98.5 3.6E-06 7.8E-11 81.6 15.8 133 346-485 3-138 (146)
69 cd08893 SRPBCC_CalC_Aha1-like_ 98.5 2.4E-06 5.2E-11 79.1 13.9 129 346-488 2-136 (136)
70 smart00234 START in StAR and p 98.5 6.8E-06 1.5E-10 82.5 17.7 162 79-243 28-203 (206)
71 cd08914 START_STARD15-like Lip 98.5 4E-06 8.6E-11 87.5 16.0 153 78-236 63-229 (236)
72 cd08868 START_STARD1_3_like Ch 98.5 5E-06 1.1E-10 84.6 15.9 142 344-488 48-207 (208)
73 cd07816 Bet_v1-like Ligand-bin 98.4 1.2E-05 2.7E-10 77.7 17.7 113 95-215 2-122 (148)
74 cd08871 START_STARD10-like Lip 98.4 6.4E-06 1.4E-10 84.6 16.6 145 341-490 44-204 (222)
75 PF06240 COXG: Carbon monoxide 98.4 1.8E-05 3.9E-10 75.7 17.7 133 349-488 2-137 (140)
76 cd08908 START_STARD12-like C-t 98.4 1.7E-05 3.8E-10 81.2 18.4 150 78-238 34-199 (204)
77 cd08874 START_STARD9-like C-te 98.4 7.2E-06 1.6E-10 84.0 15.4 139 344-486 45-203 (205)
78 COG5637 Predicted integral mem 98.4 3.6E-06 7.8E-11 83.4 12.5 138 94-243 70-211 (217)
79 cd08873 START_STARD14_15-like 98.4 1.7E-05 3.8E-10 82.8 18.2 133 78-215 62-207 (235)
80 cd08899 SRPBCC_CalC_Aha1-like_ 98.3 4.2E-06 9.1E-11 81.3 11.7 128 344-490 11-139 (157)
81 cd08870 START_STARD2_7-like Li 98.3 2.5E-05 5.4E-10 79.8 16.9 140 344-487 50-207 (209)
82 cd00177 START Lipid-binding ST 98.3 3.5E-05 7.7E-10 75.2 17.3 138 343-485 38-191 (193)
83 cd08903 START_STARD5-like Lipi 98.3 2.4E-05 5.1E-10 80.1 15.8 138 346-488 48-207 (208)
84 cd08911 START_STARD7-like Lipi 98.3 1.5E-05 3.3E-10 81.4 14.1 142 344-488 45-206 (207)
85 cd08893 SRPBCC_CalC_Aha1-like_ 98.2 2.7E-05 5.9E-10 72.0 14.2 129 96-242 2-136 (136)
86 cd08869 START_RhoGAP C-termina 98.2 2E-05 4.4E-10 79.9 14.5 146 327-484 31-192 (197)
87 PF01852 START: START domain; 98.2 0.0001 2.2E-09 73.7 19.2 159 80-243 28-203 (206)
88 smart00234 START in StAR and p 98.2 3.3E-05 7.1E-10 77.6 15.5 145 343-489 44-203 (206)
89 cd08894 SRPBCC_CalC_Aha1-like_ 98.2 6.5E-05 1.4E-09 71.2 16.5 134 346-488 2-139 (139)
90 cd08899 SRPBCC_CalC_Aha1-like_ 98.2 2.4E-05 5.2E-10 76.0 13.2 129 94-244 11-139 (157)
91 PF06240 COXG: Carbon monoxide 98.1 0.00014 3.1E-09 69.5 17.2 134 98-241 1-136 (140)
92 cd08898 SRPBCC_CalC_Aha1-like_ 98.1 5.8E-05 1.3E-09 70.7 14.2 132 345-487 2-144 (145)
93 cd08913 START_STARD14-like Lip 98.1 6E-05 1.3E-09 79.1 15.1 129 344-475 81-225 (240)
94 cd08897 SRPBCC_CalC_Aha1-like_ 98.1 7.8E-05 1.7E-09 70.1 13.6 127 346-488 2-133 (133)
95 cd08908 START_STARD12-like C-t 98.1 8.6E-05 1.9E-09 76.2 14.8 148 327-484 39-199 (204)
96 cd08872 START_STARD11-like Cer 98.1 5.6E-05 1.2E-09 79.0 13.7 145 345-492 53-230 (235)
97 cd08896 SRPBCC_CalC_Aha1-like_ 98.1 0.00028 6.1E-09 67.4 17.2 135 346-488 2-146 (146)
98 cd08873 START_STARD14_15-like 98.0 8.4E-05 1.8E-09 77.7 14.2 113 344-456 77-204 (235)
99 cd08867 START_STARD4_5_6-like 98.0 0.00022 4.7E-09 72.5 16.7 139 344-486 46-205 (206)
100 cd08910 START_STARD2-like Lipi 98.0 5.7E-05 1.2E-09 77.3 12.3 139 344-487 49-205 (207)
101 COG3427 Carbon monoxide dehydr 98.0 0.00023 4.9E-09 69.3 14.8 130 95-238 2-141 (146)
102 PF00407 Bet_v_1: Pathogenesis 97.9 0.0008 1.7E-08 65.8 18.2 135 344-486 4-148 (151)
103 cd08914 START_STARD15-like Lip 97.9 0.00023 4.9E-09 74.6 14.0 118 344-466 78-212 (236)
104 cd08895 SRPBCC_CalC_Aha1-like_ 97.8 0.0009 1.9E-08 63.9 16.5 130 346-487 2-145 (146)
105 cd08898 SRPBCC_CalC_Aha1-like_ 97.8 0.00033 7.2E-09 65.6 13.3 132 95-241 2-144 (145)
106 PF01852 START: START domain; 97.8 0.0011 2.3E-08 66.5 17.5 141 342-489 44-203 (206)
107 cd08909 START_STARD13-like C-t 97.8 0.0011 2.4E-08 68.2 17.0 152 78-238 34-200 (205)
108 cd08904 START_STARD6-like Lipi 97.8 0.0015 3.3E-08 67.1 18.0 159 78-238 29-201 (204)
109 cd08901 SRPBCC_CalC_Aha1-like_ 97.8 0.00051 1.1E-08 65.0 13.6 130 346-488 2-132 (136)
110 cd07826 SRPBCC_CalC_Aha1-like_ 97.8 0.0021 4.6E-08 61.4 17.4 134 346-487 2-141 (142)
111 PF08327 AHSA1: Activator of H 97.7 0.00091 2E-08 61.0 14.3 121 353-487 1-124 (124)
112 cd08900 SRPBCC_CalC_Aha1-like_ 97.7 0.0016 3.5E-08 61.9 16.5 132 347-488 3-143 (143)
113 cd08897 SRPBCC_CalC_Aha1-like_ 97.7 0.00092 2E-08 62.8 14.1 127 96-242 2-133 (133)
114 cd08891 SRPBCC_CalC Ligand-bin 97.7 0.0017 3.7E-08 62.2 15.7 134 346-488 2-149 (149)
115 KOG3177 Oligoketide cyclase/li 97.6 0.0005 1.1E-08 70.0 11.0 140 96-244 70-212 (227)
116 cd08894 SRPBCC_CalC_Aha1-like_ 97.6 0.0024 5.2E-08 60.5 15.2 131 96-242 2-139 (139)
117 cd08891 SRPBCC_CalC Ligand-bin 97.5 0.0039 8.5E-08 59.7 15.0 133 96-242 2-149 (149)
118 cd08909 START_STARD13-like C-t 97.4 0.0035 7.7E-08 64.5 15.1 135 344-484 52-200 (205)
119 PF08327 AHSA1: Activator of H 97.4 0.0068 1.5E-07 55.2 14.5 120 103-241 1-124 (124)
120 cd08901 SRPBCC_CalC_Aha1-like_ 97.4 0.0051 1.1E-07 58.2 14.0 131 96-243 2-133 (136)
121 cd08896 SRPBCC_CalC_Aha1-like_ 97.3 0.0092 2E-07 57.0 15.5 131 96-241 2-145 (146)
122 cd08895 SRPBCC_CalC_Aha1-like_ 97.3 0.019 4.2E-07 54.8 17.4 132 96-241 2-145 (146)
123 cd08904 START_STARD6-like Lipi 97.3 0.01 2.2E-07 61.0 16.3 162 308-486 22-203 (204)
124 PF00407 Bet_v_1: Pathogenesis 97.2 0.034 7.4E-07 54.5 17.8 135 94-241 4-149 (151)
125 COG3832 Uncharacterized conser 97.0 0.021 4.4E-07 55.6 14.1 134 344-487 8-148 (149)
126 cd08902 START_STARD4-like Lipi 96.9 0.049 1.1E-06 56.0 16.3 157 79-240 31-201 (202)
127 cd08900 SRPBCC_CalC_Aha1-like_ 96.9 0.055 1.2E-06 51.4 15.9 133 96-242 2-143 (143)
128 cd07826 SRPBCC_CalC_Aha1-like_ 96.8 0.07 1.5E-06 50.9 16.2 133 96-241 2-141 (142)
129 cd08902 START_STARD4-like Lipi 96.8 0.032 7E-07 57.3 14.5 141 339-486 44-201 (202)
130 cd08892 SRPBCC_Aha1 Putative h 96.8 0.025 5.5E-07 52.9 12.5 120 346-487 2-125 (126)
131 PTZ00220 Activator of HSP-90 A 96.5 0.013 2.9E-07 55.7 9.1 121 352-486 1-126 (132)
132 PF10698 DUF2505: Protein of u 96.2 0.18 3.8E-06 49.6 15.0 144 96-242 1-157 (159)
133 cd08907 START_STARD8-like C-te 96.1 0.12 2.6E-06 53.3 13.9 146 78-238 34-200 (205)
134 cd08892 SRPBCC_Aha1 Putative h 96.1 0.2 4.4E-06 46.8 14.5 119 96-240 2-124 (126)
135 cd08907 START_STARD8-like C-te 95.8 0.21 4.6E-06 51.5 14.1 162 305-485 24-201 (205)
136 COG4276 Uncharacterized conser 95.5 0.37 8E-06 46.6 13.3 108 346-458 4-119 (153)
137 COG3832 Uncharacterized conser 95.4 0.35 7.6E-06 47.0 13.5 135 93-241 7-148 (149)
138 PF10698 DUF2505: Protein of u 95.1 0.61 1.3E-05 45.9 14.3 137 346-487 1-156 (159)
139 PTZ00220 Activator of HSP-90 A 94.8 0.32 6.9E-06 46.2 11.0 120 102-240 1-126 (132)
140 PLN00188 enhanced disease resi 93.2 1.2 2.6E-05 53.4 13.8 144 94-238 227-385 (719)
141 KOG2761 START domain-containin 92.9 2.5 5.4E-05 44.1 13.9 158 78-243 36-215 (219)
142 PLN00188 enhanced disease resi 88.5 11 0.00023 45.7 15.4 118 344-463 227-365 (719)
143 PF08982 DUF1857: Domain of un 88.1 17 0.00037 35.9 14.3 121 355-488 19-147 (149)
144 cd08864 SRPBCC_DUF3074 DUF3074 86.1 7 0.00015 40.5 10.9 42 185-226 148-192 (208)
145 cd08863 SRPBCC_DUF1857 DUF1857 84.2 40 0.00087 33.2 14.4 88 355-455 18-108 (141)
146 COG4276 Uncharacterized conser 83.1 49 0.0011 32.5 14.2 131 96-235 4-141 (153)
147 KOG2761 START domain-containin 82.8 45 0.00098 35.1 14.9 144 339-485 49-211 (219)
148 PF01388 ARID: ARID/BRIGHT DNA 79.3 6.8 0.00015 34.7 6.7 52 550-605 5-60 (92)
149 cd08864 SRPBCC_DUF3074 DUF3074 76.2 17 0.00036 37.7 9.5 54 431-486 149-206 (208)
150 PF08982 DUF1857: Domain of un 74.4 57 0.0012 32.2 12.2 129 96-242 2-147 (149)
151 COG2005 ModE N-terminal domain 73.6 1.6 3.5E-05 42.2 1.2 47 577-630 15-61 (130)
152 PF00730 HhH-GPD: HhH-GPD supe 72.4 11 0.00023 34.1 6.2 44 549-596 8-51 (108)
153 cd08875 START_ArGLABRA2_like C 69.3 1.4E+02 0.003 31.8 14.3 142 345-486 61-228 (229)
154 PF00126 HTH_1: Bacterial regu 68.9 2.3 4.9E-05 35.0 0.9 38 584-628 4-41 (60)
155 PF09366 DUF1997: Protein of u 64.9 1.5E+02 0.0032 29.2 13.3 98 136-241 28-145 (158)
156 TIGR00637 ModE_repress ModE mo 59.1 5.3 0.00012 36.6 1.5 39 585-630 8-46 (99)
157 cd08805 Death_ank1 Death domai 58.4 4.8 0.0001 36.1 1.1 64 595-661 17-84 (84)
158 smart00501 BRIGHT BRIGHT, ARID 58.0 9 0.0002 34.3 2.8 45 551-599 2-50 (93)
159 PRK10676 DNA-binding transcrip 52.3 5.9 0.00013 42.4 0.8 44 580-630 18-61 (263)
160 cd08875 START_ArGLABRA2_like C 50.8 1.6E+02 0.0034 31.4 10.9 34 95-128 61-94 (229)
161 PF01471 PG_binding_1: Putativ 48.8 35 0.00076 27.3 4.6 36 612-649 20-55 (57)
162 smart00501 BRIGHT BRIGHT, ARID 47.0 19 0.00042 32.1 3.1 49 622-671 4-52 (93)
163 cd08863 SRPBCC_DUF1857 DUF1857 45.6 3.1E+02 0.0067 27.1 13.7 103 96-217 2-114 (141)
164 COG4891 Uncharacterized conser 44.8 79 0.0017 29.1 6.5 71 416-488 20-92 (93)
165 PF13309 HTH_22: HTH domain 41.7 21 0.00046 30.1 2.3 47 623-675 2-54 (64)
166 cd08803 Death_ank3 Death domai 35.8 25 0.00055 31.4 2.0 64 595-661 17-84 (84)
167 cd08317 Death_ank Death domain 35.6 29 0.00063 30.6 2.4 64 595-661 17-84 (84)
168 PF02954 HTH_8: Bacterial regu 35.5 48 0.001 25.4 3.3 30 648-677 2-32 (42)
169 PF02713 DUF220: Domain of unk 35.3 14 0.00031 32.2 0.4 22 175-196 20-42 (74)
170 PF09862 DUF2089: Protein of u 34.5 86 0.0019 29.8 5.4 71 551-662 30-100 (113)
171 PF01388 ARID: ARID/BRIGHT DNA 34.4 58 0.0012 28.8 4.1 50 622-672 8-57 (92)
172 cd08804 Death_ank2 Death domai 34.4 33 0.00071 30.5 2.5 62 596-661 18-84 (84)
173 PRK03601 transcriptional regul 32.5 27 0.00058 36.6 1.9 23 585-607 7-29 (275)
174 PF00730 HhH-GPD: HhH-GPD supe 31.7 85 0.0018 28.2 4.8 41 621-666 11-51 (108)
175 cd08779 Death_PIDD Death Domai 31.2 50 0.0011 29.5 3.1 64 595-661 15-83 (86)
176 PRK10236 hypothetical protein; 30.7 3.1E+02 0.0068 29.3 9.3 64 545-630 56-119 (237)
177 PF00249 Myb_DNA-binding: Myb- 27.7 57 0.0012 25.5 2.6 20 585-604 11-32 (48)
178 PF03444 HrcA_DNA-bdg: Winged 27.1 1.3E+02 0.0028 26.9 4.9 47 594-654 24-76 (78)
179 PF11687 DUF3284: Domain of un 26.9 4.6E+02 0.01 24.7 9.0 41 416-457 63-103 (120)
180 PRK10837 putative DNA-binding 26.5 45 0.00098 34.7 2.4 21 586-606 10-30 (290)
181 PRK09986 DNA-binding transcrip 26.2 47 0.001 34.6 2.5 40 583-629 11-50 (294)
182 PF09366 DUF1997: Protein of u 24.8 6.7E+02 0.014 24.6 13.8 122 361-487 6-145 (158)
183 PRK11242 DNA-binding transcrip 23.8 50 0.0011 34.4 2.1 21 586-606 8-28 (296)
184 PF14549 P22_Cro: DNA-binding 23.3 69 0.0015 27.0 2.4 21 587-607 3-23 (60)
185 PRK01905 DNA-binding protein F 23.3 2.4E+02 0.0052 24.5 5.9 55 623-678 5-65 (77)
186 TIGR03339 phn_lysR aminoethylp 23.0 54 0.0012 33.7 2.1 21 586-606 4-24 (279)
187 PRK00430 fis global DNA-bindin 22.2 1.6E+02 0.0035 26.9 4.8 55 622-677 26-82 (95)
188 PRK11139 DNA-binding transcrip 21.9 52 0.0011 34.6 1.8 21 586-606 13-33 (297)
189 TIGR02424 TF_pcaQ pca operon t 21.0 59 0.0013 34.1 2.0 22 586-607 10-31 (300)
190 CHL00180 rbcR LysR transcripti 20.8 66 0.0014 34.1 2.3 22 586-607 12-33 (305)
191 PF14549 P22_Cro: DNA-binding 20.6 85 0.0018 26.5 2.4 21 658-678 4-24 (60)
192 PRK13348 chromosome replicatio 20.5 66 0.0014 33.7 2.2 22 585-606 8-29 (294)
No 1
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.89 E-value=1.1e-21 Score=184.39 Aligned_cols=144 Identities=44% Similarity=0.713 Sum_probs=127.0
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
|++++.|+||++.||++|+||++||+|+|.++++++++. .++..++++.+..+++++.+...+++++++..+ .++.|
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~i 77 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLER-NGNRVVLEQTGKQGILFFKFEARVVLELREREE--FPREL 77 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEc-CCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecC--CCceE
Confidence 478999999999999999999999999999999999975 566667788877777766666666777776552 46899
Q ss_pred EEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 176 YFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 176 ~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+|++++|+|+.|.|+|++++.+.+++|+|+|+++++|+.++|.++++.++++.+..+|.+||++||+
T Consensus 78 ~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 78 DFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999986336899999999999999999999999999999999999999984
No 2
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.86 E-value=1.2e-20 Score=177.28 Aligned_cols=141 Identities=44% Similarity=0.737 Sum_probs=122.0
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeC--CCeEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH--EQEISFE 423 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~--~rrIsf~ 423 (732)
+++++.|+||+++||++|+|+++||+|+|+|++++++++.+++.++.+.+..+++...+..++++++.+.+ ++.|.|+
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 80 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE 80 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence 35789999999999999999999999999999999998877777666665555554445666666666544 6899999
Q ss_pred EEecCCcceeEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 424 QVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gd-G~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+++|+|..+.|.|+|++.++ |+|+++|.+.++|. .++|..+++.++++.+..+|++||++||+
T Consensus 81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~--~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPD--FFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987 68999999999985 56889999999999999999999999984
No 3
>PRK10724 hypothetical protein; Provisional
Probab=99.83 E-value=1.1e-19 Score=177.68 Aligned_cols=145 Identities=15% Similarity=0.257 Sum_probs=127.6
Q ss_pred ceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEE-EEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 341 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 341 g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~-q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..|.++..++.|++|+++||+++.|+++||+|+|+|++++|+++.++..+.. +++..|+ ..+|++++++ .++++
T Consensus 12 ~~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~-~~~f~srv~~----~~~~~ 86 (158)
T PRK10724 12 IVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGI-SKTFTTRNQL----TSNQS 86 (158)
T ss_pred CcCCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCc-cEEEEEEEEe----cCCCE
Confidence 3356899999999999999999999999999999999999999988876543 4566674 4788887655 46779
Q ss_pred EEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 420 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 420 Isf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
|.|.+++|+|+.+.|.|+|+|.++++|+|+|.++|+++ .+++..+++.++......++++|++||+++|+.
T Consensus 87 I~~~~~~GpF~~l~g~W~f~p~~~~~t~V~~~l~fef~--s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 87 ILMQLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFT--NKLIELAFGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred EEEEecCCChhhccceEEEEECCCCCEEEEEEEEEEEc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998778999999999975 678899999999999999999999999998864
No 4
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.82 E-value=2.6e-19 Score=168.10 Aligned_cols=135 Identities=23% Similarity=0.382 Sum_probs=114.6
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEE-eccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~-g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
+.++.|+||+++||++|+|+++||+|+|+|.+++++++.++.....+. +..+ ....+.++++ ..++++|.|+++
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~i~~~~~ 76 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGG-IRESFTSRVT----LVPPESIEAELV 76 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeecc-ccEEEEEEEE----ecCCCEEEEEec
Confidence 578899999999999999999999999999999999988776544332 2222 2234555533 345789999999
Q ss_pred ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 426 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 426 eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+|+|+.++|.|+|+|.++|+|+|+|.++++|. +++|.++++.++.+....+|++|+++|++
T Consensus 77 ~g~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 77 DGPFKHLEGEWRFKPLGENACKVEFDLEFEFK--SRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred CCChhhceeEEEEEECCCCCEEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999889999999999985 57899999999999999999999999875
No 5
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.80 E-value=1.1e-18 Score=163.72 Aligned_cols=136 Identities=15% Similarity=0.235 Sum_probs=110.6
Q ss_pred EEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEE
Q 004764 97 KAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELY 176 (732)
Q Consensus 97 ~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~ 176 (732)
+.++.|+||+++||++|+||++||+|+|.+.++++++. .++...+........+ ....+..++.. .+++|.
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~i~ 72 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLER-DEDELEAELTVGFGGI----RESFTSRVTLV----PPESIE 72 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEc-CCCEEEEEEEEeeccc----cEEEEEEEEec----CCCEEE
Confidence 57899999999999999999999999999999999985 4444333322211111 11222222211 267999
Q ss_pred EEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 177 FSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 177 F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
|++++|+|+.++|.|+++|.+ +++|+|+|+++++|+.++|.++++.++++.+..+|.++++||++
T Consensus 73 ~~~~~g~~~~~~g~w~~~p~~-~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 73 AELVDGPFKHLEGEWRFKPLG-ENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred EEecCCChhhceeEEEEEECC-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999986 47899999999999999999999999999999999999999986
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.76 E-value=2.8e-17 Score=154.09 Aligned_cols=137 Identities=23% Similarity=0.376 Sum_probs=110.8
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCE--EEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK--VRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~--~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
+.+++|+||+++||++|+|+++||+|+|+ ..+++++..++. .+++..+..|.. +.+.... .....+++|.|.+
T Consensus 2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~---~~~~~~~~i~~~~ 76 (142)
T cd08861 2 EHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV-HTWTSRR---VLDPEGRRIVFRQ 76 (142)
T ss_pred eEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE-EEEEEEE---EEcCCCCEEEEEE
Confidence 57889999999999999999999999999 888887765544 233455545543 3443332 2223377899999
Q ss_pred Ee--cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 425 VE--GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 425 ve--Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+. |+|..+.|.|+|++.++++|+|+|.+++++....+++..++.+++.+++..+|++||++||.
T Consensus 77 ~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 77 EEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred eeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 87 88999999999999987789999999999865456788999999999999999999999984
No 7
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.76 E-value=2.8e-17 Score=158.42 Aligned_cols=139 Identities=17% Similarity=0.385 Sum_probs=113.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE--E--EEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR--I--LQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r--v--~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
+++.+|+|+||+++||++++|+++||+|+|.|++++++++.+.... + +.. ..|. ...|+++++++ ....+|
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~-~~g~-~~~w~s~~~~~---~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPD-ANGT-VWSWVSERTLD---PVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEec-cCCE-EEEEEEEEEec---CCCcEE
Confidence 3578999999999999999999999999999999999998766543 2 222 2454 36777764443 334678
Q ss_pred EEEEE-ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 421 SFEQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 421 sf~~v-eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
.|+.. .|+|..+.|.|+|++.++| |+|+|.++|+...+.++++.++.+.+.+++...|++||++||+.
T Consensus 77 ~~~~~~~~p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~ 145 (146)
T cd08860 77 RARRVETGPFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA 145 (146)
T ss_pred EEEEecCCCcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 88544 4889999999999999776 99999999997644578888999999999999999999999974
No 8
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.74 E-value=2.6e-17 Score=152.36 Aligned_cols=127 Identities=24% Similarity=0.385 Sum_probs=100.7
Q ss_pred EecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEEEEEEc
Q 004764 102 VNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVD 181 (732)
Q Consensus 102 V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~F~~ve 181 (732)
|+||++.||++|+||++||+|+|.+++|++++. +++++++............+.+ ++.+.+ ...|.|.++.
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~ 71 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLER-DGDGMRARWEVKFGGIKRSWTS----RVTEDP----PERIRFEQIS 71 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEE-ECCEEEEEEEECTTTTCEEEEE----EEEEEC----TTTEEEESSE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEe-CCCeEEEEEEEecCCEEEEEEE----EEEEEE----eeeeeeeecC
Confidence 789999999999999999999999999999986 4445444322222111222222 223333 2349999999
Q ss_pred cccceeeEEEEEEecCC---CCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHH
Q 004764 182 GDFKKFEGKWSIKSGTR---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALA 237 (732)
Q Consensus 182 GDfk~f~GsW~Lepl~~---g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk 237 (732)
|+|+.++|.|++++.+. +.+|.++|++.++|++++|..+++.++++.++.+|++||
T Consensus 72 g~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 72 GPFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp TTEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999874 567899999999999999999999999999999999986
No 9
>PRK10724 hypothetical protein; Provisional
Probab=99.73 E-value=5.7e-17 Score=158.64 Aligned_cols=140 Identities=18% Similarity=0.330 Sum_probs=119.5
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEE-EEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWL-EQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv-~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
.++.++.|++|+++||++++|+++||+|+|.+++|+++++. ++..+. .++|...+ ...+++++++. .++
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~-~~~~~a~l~v~~~g~-~~~f~srv~~~--------~~~ 85 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLEST-PGQMTAAVDVSKAGI-SKTFTTRNQLT--------SNQ 85 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEec-CCEEEEEEEEeeCCc-cEEEEEEEEec--------CCC
Confidence 68999999999999999999999999999999999999874 444333 35555543 44455555442 356
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcc
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~ 245 (732)
+|.|.+++|+|+.++|.|+++|.+ +++|+|+|+++++.+-+++..++..+.++....+++|.++||++++.
T Consensus 86 ~I~~~~~~GpF~~l~g~W~f~p~~-~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg 156 (158)
T PRK10724 86 SILMQLVDGPFKKLIGGWKFTPLS-QEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYS 156 (158)
T ss_pred EEEEEecCCChhhccceEEEEECC-CCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999986 46799999999999999999999999999999999999999998765
No 10
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.72 E-value=9.5e-17 Score=148.54 Aligned_cols=126 Identities=34% Similarity=0.548 Sum_probs=103.5
Q ss_pred EcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEecCCcc
Q 004764 352 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDS 431 (732)
Q Consensus 352 I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~veGdfk~ 431 (732)
|+||+++||++++||++||+|+|+|.+++++++.++++++......+.....|.+++ .+.++..|.++++.|+|+.
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~ 76 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGIKRSWTSRV----TEDPPERIRFEQISGPFKS 76 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTTCEEEEEEE----EEECTTTEEEESSETTEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCEEEEEEEEE----EEEEeeeeeeeecCCCchh
Confidence 789999999999999999999999999999999988766544333333336677764 3345555999999999999
Q ss_pred eeEEEEEEEcCC---C-eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 432 FQGKWLFEQLGS---H-HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 432 f~G~W~Lep~gd---G-~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
+.|.|+|++.++ | .|+++|.+.++|. .++|..+++.++++.++.++++||
T Consensus 77 ~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 77 FEGSWRFEPLGGNEGGTRTRVTYDYEVDPP--GPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEETTECCEEEEEEEEEEEEETS--SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEECCCCcCCCEEEEEEEEEEecC--cHhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999885 3 5778888888764 678999999999999999999986
No 11
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=99.71 E-value=7.6e-17 Score=153.81 Aligned_cols=143 Identities=20% Similarity=0.359 Sum_probs=124.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEE-EEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI-LQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv-~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
.+++.+..|+++|+++|++++|+++||+|+|+|..++|+++.+..+.. ..++..++- .+|.+++++. +..+.|..
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~-e~F~Trv~~~---~~~~~I~~ 77 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIR-ETFTTRVTLK---PTARSIDM 77 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhee-eeeeeeeeec---Cchhhhhh
Confidence 468889999999999999999999999999999999999998877643 335666643 6788887664 23348999
Q ss_pred EEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 423 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 423 ~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
..++|||+.+.|.|+|.|+++++|.|.+.++|++. ..+.+.++..++.+....++++|.+||...+..
T Consensus 78 ~l~~GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~--s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~~ 145 (146)
T COG2867 78 KLIDGPFKYLKGGWQFTPLSEDACKVEFFLDFEFK--SRLLGALIGPVFKRLASKMVEAFEKRAKEVYGL 145 (146)
T ss_pred hhhcCChhhhcCceEEEECCCCceEEEEEEEeeeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999998889999999999986 568889999999999999999999999988764
No 12
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.71 E-value=3.7e-16 Score=146.51 Aligned_cols=137 Identities=18% Similarity=0.310 Sum_probs=106.5
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCC-eeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPG-RIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~gg-rirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
++.++.|+||+++||++|+|+++||+|+|. .+++++...+++ .++++..+..... ..+... .+.. +.+++
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~-----~~~~--~~~~~ 71 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV-HTWTSR-----RVLD--PEGRR 71 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE-EEEEEE-----EEEc--CCCCE
Confidence 467899999999999999999999999999 888887753332 3454555533221 111111 1111 34678
Q ss_pred EEEEEEc--cccceeeEEEEEEecCCCCeeEEEEEEEEecCCC--ccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 175 LYFSMVD--GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN--FPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 175 I~F~~ve--GDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p--iP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
|.|.++. |+|+.+.|+|+|++.+ +++|+|+|+++++++.+ ++..++.++++++++.+|.+||++||+
T Consensus 72 i~~~~~~~~~~~~~~~g~w~~~~~~-~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 72 IVFRQEEPPPPVASMSGEWRFEPLG-GGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred EEEEEeeCCCChhhheeEEEEEECC-CCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 9999997 7899999999999975 46899999999999874 566789999999999999999999984
No 13
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=2.5e-15 Score=139.30 Aligned_cols=137 Identities=17% Similarity=0.270 Sum_probs=106.8
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+++.++.|+||++.||++|+|+++|++|+|.+.++++++..+++.....+.+.. .... ....+.++... .+++
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~----~~~~ 75 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG-AYGI--KDTYALEYTWD----GAGS 75 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEe-eeeE--EEEEEEEEEEc----CCCc
Confidence 589999999999999999999999999999999999986544343222222111 1111 11122222221 2578
Q ss_pred EEEEEEccc-cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 175 LYFSMVDGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 175 I~F~~veGD-fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
|+|+.+.|. +..+.|.|+|++.+ ++|+|+|+++++|+.++|.++++.+.+......+++|+++|
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~--~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 76 VSWTLVEGEGNRSQEGSYTLTPKG--DGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EEEEEecccceeEEEEEEEEEECC--CCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 999999887 88999999999975 48999999999999999999999999999999999999864
No 14
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.67 E-value=2.4e-15 Score=145.01 Aligned_cols=138 Identities=14% Similarity=0.243 Sum_probs=106.2
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCC-eeEE--EEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPG-RIWL--EQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~gg-rirv--~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+++++|+|+||++.||++++|.++||+|+|.++++++++..+.+ +.++ +..... +.+.+++++.++ +.
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g--~~~~w~s~~~~~-------~~ 72 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANG--TVWSWVSERTLD-------PV 72 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCC--EEEEEEEEEEec-------CC
Confidence 46899999999999999999999999999999999999853222 2222 432211 122222222222 34
Q ss_pred CceEEEEEE-ccccceeeEEEEEEecCCCCeeEEEEEEEEecC--CCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 172 DRELYFSMV-DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 172 ~rrI~F~~v-eGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~--~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
..+|.|+.. .|.|+.+.|.|++++.+ ++|+|+|..+++.. .+++..++.++++++++.+|.+||++||+.
T Consensus 73 ~~~i~~~~~~~~p~~~m~~~W~f~~~~--~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~ 145 (146)
T cd08860 73 NRTVRARRVETGPFAYMNIRWEYTEVP--EGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA 145 (146)
T ss_pred CcEEEEEEecCCCcceeeeeEEEEECC--CCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 567999533 57799999999999974 45999999988854 488889999999999999999999999974
No 15
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.66 E-value=3.2e-15 Score=138.66 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=105.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCE-EEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK-VRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~-~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
+++.++.|+||+++||++|+|+++||+|+|+|.++++++..++. ........ +.... ....+.++....+.+|.|+
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~i~~~ 79 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGV-GAYGI--KDTYALEYTWDGAGSVSWT 79 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEE-eeeeE--EEEEEEEEEEcCCCcEEEE
Confidence 58899999999999999999999999999999999998654432 21111111 11111 1122233444446789999
Q ss_pred EEecC-CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 424 QVEGD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 424 ~veGd-fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
...|. +..+.|.|+|++.++ +|+|+|++++++. .++|..+++.+.+.....++++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 80 LVEGEGNRSQEGSYTLTPKGD-GTRVTFDLTVELT--VPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EecccceeEEEEEEEEEECCC-CEEEEEEEEEEec--CCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 99876 778899999999987 5999999999984 578999999999999999999999875
No 16
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=3.8e-14 Score=131.49 Aligned_cols=135 Identities=21% Similarity=0.310 Sum_probs=104.3
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
++.++.|+||+++||++++|+++||+|+|++.+++++.+.+....+ ....|. ...+..+++ ...+++.|.|...
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~g~-~~~~~~~v~---~~~~~~~i~~~~~ 75 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKA--KGPAGL-SVEWDAEIT---EQVPNERIAWRSV 75 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEE--ecCCCC-cEEEEEEEe---ccCCCCEEEEEEC
Confidence 6788999999999999999999999999999999988542222222 221132 245555432 1245678999988
Q ss_pred ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccC--ccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 426 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 426 eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d--~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.|.+ .+.|.|+|++.++++|+|+|++.+++... ..+...+++.++++.+.+.|+.||+.||
T Consensus 76 ~~~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 76 EGAD-PNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CCCC-CcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 8887 88999999998877899999999997531 1234567899999999999999999998
No 17
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.52 E-value=3e-12 Score=118.09 Aligned_cols=138 Identities=20% Similarity=0.314 Sum_probs=104.3
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeC-CCeEE
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH-EQEIS 421 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~-~rrIs 421 (732)
|.+++.++.|+||+++||++|+|+++|++|.|.+..+++++..+........ ..|. ..+..+++ .. .+ ++.+.
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~g~--~~~~~~i~--~~-~~~~~~~~ 74 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVR-VAGR--GTVREEIT--EY-DPEPRRIT 74 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEE-ECSC--SEEEEEEE--EE-ETTTTEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEE-eccc--cceeEEEE--Ee-cCCCcEEE
Confidence 4679999999999999999999999999999999999988744343211111 2231 12223221 11 34 78999
Q ss_pred EEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 422 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 422 f~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
|+....++..+.+.|+|++.++| |+|+++.++++....++...++...++..+...|+.|++.+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 75 WRFVPSGFTNGTGRWRFEPVGDG-TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEEESSSSCEEEEEEEEEEETTT-EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecceeEEEEEEEEEEcCCC-EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99865556677999999999977 999999999862234567788999999999999999999987
No 18
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.52 E-value=4.9e-13 Score=122.98 Aligned_cols=135 Identities=19% Similarity=0.315 Sum_probs=100.5
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC----EEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN----KVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g----~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
+.++.|+||+++||++|+|+++|++|+|.+..++++...+. ..++ .....+. ...+..+++ ...+++.+.|
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~-~~~~~g~-~~~~~~~v~---~~~p~~~~~~ 76 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQ-VRKFLGR-RIELTYEIT---EYEPGRRVVF 76 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEE-EEEecCc-eEEEEEEEE---EecCCcEEEE
Confidence 56889999999999999999999999999999988754322 2222 2222232 133444321 2246789999
Q ss_pred EEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 423 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 423 ~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
....|++. +.+.|+|++.++ +|+|+|++.+++.+...+...++...++..+...|++||+++|+
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 77 RGSSGPFP-YEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred EecCCCcc-eEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 98777664 699999999876 59999999988632123456678999999999999999999984
No 19
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.50 E-value=1.5e-12 Score=129.74 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=117.0
Q ss_pred cCCceEEEEEEecCcc-eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~-rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
+.++|+++.+...++. ..+++++.|++++++||+++.|+++|++|.|.+.++++++..+++....+...... |.+.
T Consensus 24 ~~~~v~v~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p---~pvs 100 (195)
T cd08876 24 DKDGIKVYTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLP---WPVK 100 (195)
T ss_pred cCCCeEEEEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecc---cccC
Confidence 4679999999987774 78999999999999999999999999999999999999987554443333322111 1000
Q ss_pred EE-EEEEEEEeecCCCCceEEEEEEcc-----------ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 AR-VVLDLQELIHSASDRELYFSMVDG-----------DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 ar-vvLdv~E~~~~~~~rrI~F~~veG-----------Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
.| .+....-... ..++.+.+...++ -++.+.|.|.+++.+ +++|+|+|.+.++|++++|.++++.+
T Consensus 101 ~Rdfv~~~~~~~~-~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~-~~~t~vt~~~~~dp~g~iP~~lv~~~ 178 (195)
T cd08876 101 DRDMVLRSTTEQD-ADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG-NGKTRVTYQAYADPGGSIPGWLANAF 178 (195)
T ss_pred CceEEEEEEEEEc-CCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECC-CCeEEEEEEEEeCCCCCCCHHHHHHH
Confidence 11 1111111110 1123444443322 157788999999986 57899999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHH
Q 004764 225 IRSDLPVNLQALACRA 240 (732)
Q Consensus 225 ir~~L~~~L~ALk~ra 240 (732)
.++.++..|.+|+++|
T Consensus 179 ~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 179 AKDAPYNTLENLRKQL 194 (195)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999987
No 20
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.50 E-value=4.2e-13 Score=124.54 Aligned_cols=133 Identities=14% Similarity=0.197 Sum_probs=102.9
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
|+.++.|+||++.||++++|+++|++|+|.+.+++++.. .+.+..+... .. .....+..+.+.. .++.|
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~-~g------~~~~~~~~v~~~~---~~~~i 70 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD-TRSHWKAKGP-AG------LSVEWDAEITEQV---PNERI 70 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC-CceEEEEecC-CC------CcEEEEEEEeccC---CCCEE
Confidence 688999999999999999999999999999999988742 2223222111 01 1111222233322 35679
Q ss_pred EEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccH----HHHHHHHHhCHHHHHHHHHHHHH
Q 004764 176 YFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA----IFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 176 ~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~----~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
.|.+..|.+ .+.|.|++++.+ +++|+|+|++.++|..+++. .+++.++++.+...|+.||+.||
T Consensus 71 ~~~~~~~~~-~~~~~~~f~~~~-~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 71 AWRSVEGAD-PNAGSVRFRPAP-GRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred EEEECCCCC-CcceEEEEEECC-CCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 999998888 899999999975 46899999999999988876 56789999999999999999987
No 21
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=1.2e-12 Score=123.97 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=100.3
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEe------eCCEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR------ENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer------~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
.+++.++.|+||+++||++++|+++||+|+|++..+..+.. .+.+.++......+.....+ ++ ....++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~v---~~~~p~ 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM--EI---TESVPN 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE--EE---EecCCC
Confidence 46889999999999999999999999999999987654432 11122222232221111111 11 112467
Q ss_pred CeEEEEEEe-cCCc-ceeEEEEEEEcCCCeEEEEEEEEEEeccCcc--chHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 418 QEISFEQVE-GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 418 rrIsf~~ve-Gdfk-~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~--Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
++|.|+... +++. .+.+.|+|++.++ +|+|+|+++++..+... +.+.++.+.+++++...|++||+++|+
T Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 77 ERIEYELRFIKPFEATNDVEFTLEPVGG-GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred cEEEEEEEecCCccccceEEEEEEEcCC-ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999885 7775 7899999999955 59999999998642211 456778999999999999999999985
No 22
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.46 E-value=3e-12 Score=118.65 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=99.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEee-CCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~-~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
+++.++.|+||++.||++++|+++||+|+|++.+++++.+. +.+.++......+ ..+..++ ....++++|.|.
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i---~~~~p~~~~~~~ 75 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTV---TELRPGHSFTWT 75 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEE---EEecCCCEEEEE
Confidence 47889999999999999999999999999999999998654 2223332222212 1222222 112367889998
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
... ++....+.|+|++.++++|+++|+.++.... .++...++.+.+++.+...|++||+.+|.
T Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 76 GPA-PGISAVHRHEFEAKPDGGVRVTTSESLSGPL-AFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred ecC-CCEEEEEEEEEEEcCCCcEEEEEEEEeecch-HHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 654 3335578999999876789999998876421 23456789999999999999999999874
No 23
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.46 E-value=2.4e-12 Score=118.71 Aligned_cols=134 Identities=19% Similarity=0.313 Sum_probs=103.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCC-CeEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHE-QEIS 421 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~-rrIs 421 (732)
.++.++.|+||+++||++|+|+++|+.|+|.+.++++++..+ +..+.... ..+ ..+..+++ . ..++ ++|.
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~-~~g---~~~~~~i~--~-~~~~~~~i~ 74 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTL-KDG---GTVRERLL--A-LDDAERRYS 74 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEe-CCC---CEEEEEeh--h-cCccCCEEE
Confidence 478899999999999999999999999999999999986542 33322221 122 12222211 1 1344 8999
Q ss_pred EEEEec--CCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 422 FEQVEG--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 422 f~~veG--dfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
|+...| ++..+.|.|+|++.++|+|+|+|++.+++.+ +++..+++..+++.+...|+.|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 75 YRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPE--GLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecCC--CcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999875 4567899999999988789999999999753 377789999999999999999999875
No 24
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.45 E-value=1.6e-12 Score=119.89 Aligned_cols=136 Identities=17% Similarity=0.244 Sum_probs=104.7
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCC-CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPY-PGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~-ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
+|+.++.|+||++.||++|+|+++|++|+|.+.+++++.... .|..+....... . .....+.+.. +...
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g--~------~~~~~i~~~~--~~~~ 71 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG--G------TVRERLLALD--DAER 71 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC--C------EEEEEehhcC--ccCC
Confidence 588999999999999999999999999999999998875422 132221111111 0 0111122222 1237
Q ss_pred eEEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 174 ELYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 174 rI~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
+|.|++..|+ +..+.|.|+|++.+ +++|+|+|+..+.+..++|..+++..++..+...|.+|++++|
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 72 RYSYRIVEGPLPVKNYVATIRVTPEG-DGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EEEEEecCCCCCcccceEEEEEEECC-CCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999863 67899999999975 4589999999999999999999999999999999999999774
No 25
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.43 E-value=4.8e-12 Score=117.91 Aligned_cols=137 Identities=13% Similarity=0.231 Sum_probs=99.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEE-eccceeEEEEEEEEEEEEEe-eCCCeEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICE-QHEQEISF 422 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~-g~~gll~~~~~~rvvLdv~e-~~~rrIsf 422 (732)
.++.++.|++|+++||++|+|+++|++|+|++.++++++. +...+... +. +.....+..+. .+.+ .++.++.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 76 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP--NEYEATVKLKV-GPVKGTFKGKV--ELSDLDPPESYTI 76 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC--CeEEEEEEEEE-ccEEEEEEEEE--EEEecCCCcEEEE
Confidence 4788999999999999999999999999999999988753 33322111 11 22212233222 2333 34577888
Q ss_pred EEEe-cC--CcceeEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 423 EQVE-GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 423 ~~ve-Gd--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d-~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.... ++ +..+.+.|+|++. +++|+|+|++++++.+. ..++..+++.++++.+...++.||++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 77 TGEGKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred EEEEcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7653 33 5688999999998 56799999999997531 1347888999999999999999998863
No 26
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=3.1e-12 Score=121.95 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=96.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEe-eCCE--EEE--EEEeccceeEEEEEEEEEEEEEe-eCCC
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-ENNK--VRI--LQEGCKGLLYMVLHARVVMDICE-QHEQ 418 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer-~~g~--~rv--~q~g~~gll~~~~~~rvvLdv~e-~~~r 418 (732)
+++.+..|+||+++||++++|+++||+|+|+|.++++++. .+.+ .++ ...+..+.. ..+..+ +.+ .+++
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~----v~~~~p~~ 76 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYR-LRFELR----VTRIEPLS 76 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcE-EEEEEE----EEeecCCc
Confidence 4677889999999999999999999999999999999873 2211 122 222222211 233333 333 4678
Q ss_pred eEEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEecc-----CccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 419 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-----NSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 rIsf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~-----d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
.+.|. ..|++.. .+.|+|++.++ +|+|+|+++++..+ -.++++.++...+++.+..++++||++
T Consensus 77 ~~~~~-~~g~~~~-~~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 77 LLEVR-ASGDLEG-VGRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEEE-EEEeeeE-EEEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 99997 5788765 89999999765 59999999988631 124567778888888888888888876
No 27
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=8.2e-12 Score=114.87 Aligned_cols=136 Identities=16% Similarity=0.271 Sum_probs=99.5
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCC--CeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYP--GRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g--grirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
|+.++.|+||++.||++|+|+++|++|.|.+.+++++..... |..+..+.... .+ .......+.+.. +++
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~---g~--~~~~~~~v~~~~---p~~ 72 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFL---GR--RIELTYEITEYE---PGR 72 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEec---Cc--eEEEEEEEEEec---CCc
Confidence 468899999999999999999999999999999988753211 21211122111 11 111222333332 368
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc--cHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF--PAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi--P~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.+.|....|.+. +.+.|++++.+ ++|+|+|+.+++++++. ...++...+++.+...|++||+++|+
T Consensus 73 ~~~~~~~~~~~~-~~~~~~~~~~~--~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 73 RVVFRGSSGPFP-YEDTYTFEPVG--GGTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred EEEEEecCCCcc-eEEEEEEEEcC--CceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 899998877664 79999999964 58999999999886543 34578899999999999999999884
No 28
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.38 E-value=1.8e-11 Score=114.08 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=100.4
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEE-EEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLE-QRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~-Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
.++.++.|+||+++||++|+|+++|++|+|.+.++++++ ++...+. +.+. ..+. .+......+.+.. +++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~---~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~---~~~ 72 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIG---PNEYEATVKLKV-GPVK--GTFKGKVELSDLD---PPE 72 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccC---CCeEEEEEEEEE-ccEE--EEEEEEEEEEecC---CCc
Confidence 478999999999999999999999999999999988864 2332221 1111 1111 1111223333332 346
Q ss_pred eEEEEEEc-c--ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc---cHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 174 ELYFSMVD-G--DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 174 rI~F~~ve-G--Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi---P~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
++.+.... | .+..+.+.|+|++. +++|+|+|++++++..++ |..+++.+.++.+...+++||+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 73 SYTITGEGKGGAGFVKGTARVTLEPD--GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEEec--CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777653 2 37899999999996 468999999999988876 899999999999999999999976
No 29
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.38 E-value=4.6e-11 Score=110.17 Aligned_cols=134 Identities=17% Similarity=0.246 Sum_probs=101.3
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCee-EEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRI-WLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggri-rv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
+++.++.|+||+++||++|+|++++++|.|.+.+++++.. ++... +....... . .....+.++. +.++
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~g~----~----~~~~~i~~~~--~~~~ 71 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSG-GGPGTERTVRVAGR----G----TVREEITEYD--PEPR 71 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE-CSTEEEEEEEECSC----S----EEEEEEEEEE--TTTT
T ss_pred EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccc-cccceeEEEEeccc----c----ceeEEEEEec--CCCc
Confidence 6899999999999999999999999999999999998762 22221 22222110 1 1223333333 2479
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEec--CCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIP--RLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P--~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
.+.|+.+.+.+..+.|.|++++.+ ++|+|+|++++.| ..++...++...++..+...|++||+.+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~--~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 72 RITWRFVPSGFTNGTGRWRFEPVG--DGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEEEEEESSSSCEEEEEEEEEEET--TTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecceeEEEEEEEEEEcC--CCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999744567889999999975 5599999999997 34456677899999999999999999987
No 30
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=1.4e-11 Score=117.43 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=97.1
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCee-EEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRI-WLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggri-rv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
++.-+..|+||++.||++|+|+++||+|+|.+.++++++...+.+. ..++........+. ......+++.. .++
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~v~~~~---p~~ 76 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYR--LRFELRVTRIE---PLS 76 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcE--EEEEEEEEeec---CCc
Confidence 4567889999999999999999999999999999999863111111 11111111111221 12223334432 367
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCC-------CccHHHHHHHHHhCHHHHHHHHHHH
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL-------NFPAIFLERIIRSDLPVNLQALACR 239 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~-------piP~~Lv~~~ir~~L~~~L~ALk~r 239 (732)
.+.|+ ..|+|+. .+.|+|++. ++||+|+|+.+++++. ++...++..+.++.++..+++||++
T Consensus 77 ~~~~~-~~g~~~~-~~~~~~~~~--~~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 77 LLEVR-ASGDLEG-VGRWTLAPD--GSGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEEE-EEEeeeE-EEEEEEEEc--CCCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 89997 5788874 799999995 4689999999999865 6777788888888888899998875
No 31
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.36 E-value=3.9e-11 Score=110.73 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=99.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEE-EeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKIL-SRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVL-er~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
|+.++.|+||+++||++++|+++|+.|+|.+..++.. -..+++.........+.. ..+..++ ....++++|.|+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~v---~~~~p~~~~~~~~ 77 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPP-RSFKPRV---TEVEPPRRLAWRG 77 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCc-EEEEEEE---EEEcCCCEeEEEe
Confidence 6788999999999999999999999999999888765 344555444333222111 2233332 1124678999998
Q ss_pred EecCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 425 VEGDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 425 veGdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
..++.. ...+.|+|++.++++|+++++..+... ..++...++.+.+.+++...++.|+++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 78 GLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGL-LAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred cCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEE-EhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 776533 467899999986678999998766532 12345567999999999999999999986
No 32
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.33 E-value=2.1e-11 Score=115.49 Aligned_cols=136 Identities=12% Similarity=0.234 Sum_probs=98.2
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEec-----C-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPC-----P-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~-----~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
+++.++.|+||++.||++++|+++|++|+|.+..+..+.. . ..|....+ .+.... ......+.+..
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~------~~~~~~v~~~~- 74 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSW-EGNDKV------GEGEMEITESV- 74 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEE-ecCCcc------cceEEEEEecC-
Confidence 6899999999999999999999999999998766544321 1 11111111 111000 01122333332
Q ss_pred CCCCceEEEEEEc-cccc-eeeEEEEEEecCCCCeeEEEEEEEEecCCCcc----HHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 169 SASDRELYFSMVD-GDFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP----AIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 169 ~~~~rrI~F~~ve-GDfk-~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP----~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.+++|.|+... |+++ .+.+.|.+++. ++||+|+|.+++++.++.+ ..++..++++++...|.+||+++|+
T Consensus 75 --p~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 75 --PNERIEYELRFIKPFEATNDVEFTLEPV--GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred --CCcEEEEEEEecCCccccceEEEEEEEc--CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 36889999985 6675 88999999997 4689999999998876644 4567899999999999999999884
No 33
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.32 E-value=4.5e-11 Score=110.75 Aligned_cols=134 Identities=17% Similarity=0.234 Sum_probs=97.9
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecC-CCC-eeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCP-YPG-RIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~-~gg-rirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
+++.++.|+||++.||++++|+++|++|+|.+.+++++... +.| +.++. .+.. . .....+.++. ++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~-~~~~----~----~~~~~i~~~~---p~ 69 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMK-PPGL----V----RSTFTVTELR---PG 69 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEe-cCCC----C----ceEEEEEEec---CC
Confidence 57899999999999999999999999999999999887643 222 22222 1111 1 1122334443 35
Q ss_pred ceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCC-CccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 173 RELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL-NFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 173 rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~-piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+++.|+... ++....+.|+|++.+ +++|+|+|+..+...+ ++...++...+++.+...|++||+.+|.
T Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 70 HSFTWTGPA-PGISAVHRHEFEAKP-DGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred CEEEEEecC-CCEEEEEEEEEEEcC-CCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 789998654 345567899999964 4789999999886533 2345788999999999999999998873
No 34
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.28 E-value=1.5e-10 Score=115.27 Aligned_cols=142 Identities=14% Similarity=0.216 Sum_probs=102.8
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEeccce-e-EEEEEEEEEEEEEeeCCCe
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGL-L-YMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gl-l-~~~~~~rvvLdv~e~~~rr 419 (732)
.+.+.+++.|++|+++||+++.|++.||+|.|+|.+++++++.++.. .......... + ...+......... ..+..
T Consensus 40 ~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~-~~~~~ 118 (195)
T cd08876 40 LKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQD-ADDGS 118 (195)
T ss_pred eEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEc-CCCCE
Confidence 47789999999999999999999999999999999999999876532 2222211111 0 0112221111110 11334
Q ss_pred EEEEEEec----C-------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 420 ISFEQVEG----D-------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 420 Isf~~veG----d-------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
+.+...++ | +..+.|.|.|++.++++|+|+|.+.++|. +++|..+++.+++..+..++++|+++|.
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~--g~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPG--GSIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333322 2 45778999999998889999999999985 6899999999999999999999999873
No 35
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=1.2e-10 Score=109.80 Aligned_cols=106 Identities=23% Similarity=0.326 Sum_probs=82.1
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCE----EEEE-EEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK----VRIL-QEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~----~rv~-q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+.++.|+||+++||++++|.++||.|+|.+.+++++...++. .++. .....++. +.|.++++ ...+++.+.
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~-~~w~~~it---~~~p~~~f~ 77 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIP-QRWTTEIT---EVEPPRRFV 77 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCc-eEEEEEEE---EEcCCCeEE
Confidence 578899999999999999999999999999999998654332 1221 12222322 46666642 224568899
Q ss_pred EEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEec
Q 004764 422 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ 457 (732)
Q Consensus 422 f~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~ 457 (732)
++++.|+|..++++|+|++.++ +|+|++++++++.
T Consensus 78 ~~~~~G~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 78 DEQVSGPFRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEeccCCchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 9999999998999999999876 5999999999973
No 36
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=99.23 E-value=7.7e-11 Score=112.97 Aligned_cols=141 Identities=16% Similarity=0.324 Sum_probs=116.6
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEE-EEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWL-EQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv-~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
++..+..|+.+|+++|+++.|+++||+|+|.+..++|++. ++....- ..+|... +.-.|+.+++++ +..+
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~~k~-i~e~F~Trv~~~-------~~~~ 73 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLER-NERELIAELDVGFKG-IRETFTTRVTLK-------PTAR 73 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEecc-CcceeEEEEEEEhhh-eeeeeeeeeeec-------Cchh
Confidence 5788999999999999999999999999999999999986 4443211 1244332 233455555554 2345
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcc
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~ 245 (732)
.|....++|+|+...|.|+++|++ +++|.|.+.++.+.+-.+-..++....+.....+.+|..+||...+.
T Consensus 74 ~I~~~l~~GPFk~L~~~W~F~pl~-~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~ 144 (146)
T COG2867 74 SIDMKLIDGPFKYLKGGWQFTPLS-EDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKEVYG 144 (146)
T ss_pred hhhhhhhcCChhhhcCceEEEECC-CCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999985 68999999999999999999999999999999999999999998653
No 37
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.22 E-value=3.2e-10 Score=105.00 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=96.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
+..++.|+||+++||++|+|+++||+|+|.+..+.+....++..........+.. ..+..++ ....++++|.|+..
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~-~~~~~~i---~~~~~~~~i~~~~~ 77 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEE-GWVSGEV---LEVEPPRRLVFTWA 77 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCE-EeccEEE---EEEcCCCeEEEEec
Confidence 5678999999999999999999999999985445544445554443333222211 1222222 11246689999988
Q ss_pred ecC---CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 426 EGD---FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 426 eGd---fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.++ +....+.|+|++.++ +|+|+++..+.+.. .+...+...+.+....+|..||+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~T~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 78 FSDETPGPETTVTVTLEETGG-GTRLTLTHSGFPEE---DAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred ccCCCCCCceEEEEEEEECCC-CEEEEEEEEccChH---hHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 763 457789999999984 59999998876531 224567778888999999999999984
No 38
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.20 E-value=1.6e-10 Score=113.60 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=109.1
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.+|+|++|+++||+++.|+|++|.||.|+.+|+|+++...+ |....-+...++|.++++-| .+..+|.|+
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkrSr---W~~~ap~g~~v~Wea~it~d---~~~e~I~W~ 143 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKRSR---WKANAPLGLEVEWEAEITKD---IPGERIQWE 143 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCccc---eeEcCCCCceEEEeehhhcc---CCCcEEeee
Confidence 458889999999999999999999999999999999999765532 22222234557899986544 366899999
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHH----HhhHHHHHHHHHHHHHhh
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI----YEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~l----r~~l~~~L~ALK~rAE~~ 489 (732)
.++|.--..+|.-+|++..+..|.|+..+.+.|.+ ++...++.+++ ...+.+.|+.||+++|..
T Consensus 144 Sl~Ga~v~NsG~VrF~~~pg~~t~V~v~lsY~~Pg--g~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~ 211 (217)
T COG5637 144 SLPGARVENSGAVRFYDAPGDSTEVKVTLSYRPPG--GLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG 211 (217)
T ss_pred cCCCCcCCCCccEEeeeCCCCceEEEEEEEecCCc--cHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence 99986557799999999888889999999999853 34445555554 667788888999998874
No 39
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=8.4e-10 Score=98.45 Aligned_cols=135 Identities=23% Similarity=0.308 Sum_probs=94.4
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEE-ec-cceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GC-KGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~-g~-~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
+.++.|+||+++||++++|+++|+.|+|++..++++............ .. .+. ...+..+++. ..++..+.|..
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~---~~~~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTE---VDPPRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEE---ecCCCceEEEE
Confidence 467899999999999999999999999999999988764433221111 10 011 1223333221 12456888988
Q ss_pred EecCCc-ceeEEEEEEEcCCCeEEEEEEEEEEeccCc-cchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 425 VEGDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNS-LLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 425 veGdfk-~f~G~W~Lep~gdG~TrVty~v~~ep~~d~-~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
..+++. .+.+.|.|++.++++|+|++.+.+.+.... .++..++.+.++..+...+..++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 78 TGGGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred ecCCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 877655 789999999988757999999999875311 1356678888887777777777654
No 40
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=5.6e-10 Score=106.41 Aligned_cols=134 Identities=12% Similarity=0.149 Sum_probs=88.5
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-e-CCCeEEEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-Q-HEQEISFEQ 424 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~-~~rrIsf~~ 424 (732)
+.++.|+|||+.||++|+|+++|+.|+|.+..++++. ++.........-+.....+..++ ++.+ . +++++.+..
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGPISASFKGTA--RLLEDDEAARRAVLEA 77 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEccEEEEEEEEE--EEEeccCCCcEEEEEE
Confidence 4678999999999999999999999999998888753 23332211111111223343333 3443 2 567887764
Q ss_pred EecCCc-----ceeEEEEEEEcCCCeEEEEEEEEEEeccCccc---hHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 425 VEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLL---SEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 425 veGdfk-----~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~L---p~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
...+.. .....|++.+. +++|+|+|.+++++. +++ ...++++..++.+...++.|++++|
T Consensus 78 ~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~--g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 78 TGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLALT--GKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEEe--eEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 321111 34668999984 467999999988864 334 3445777777777888888888876
No 41
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=4.8e-10 Score=106.89 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=96.3
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEE-EEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWL-EQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv-~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
|+.++.|+|||+.||+.|+|+++|+.|+|+++..+++ +++.... .+.. +..+..+......+.+.. ..+++
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~---~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~--~~~~~ 72 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVE---GDDEYKGTVKVK---LGPISASFKGTARLLEDD--EAARR 72 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHHHHhcCCCceecccc---CCCeEEEEEEEE---EccEEEEEEEEEEEEecc--CCCcE
Confidence 4678999999999999999999999999999988764 2333211 1221 112222222233444432 14677
Q ss_pred EEEEEEc--cc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHH---HHHHHHhCHHHHHHHHHHHHH
Q 004764 175 LYFSMVD--GD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF---LERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 175 I~F~~ve--GD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~L---v~~~ir~~L~~~L~ALk~raE 241 (732)
+.+.... +. .-.....|+|.+. +++|+|+|+++++...+++... +++..++.+...+++|++++|
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 73 AVLEATGKDARGQGTAEATVTLRLSPA--GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEEEEEEecCCCcceEEEEEEEEEEec--CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 8776543 11 1256678999983 5789999999999999987765 888889999999999999887
No 42
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.15 E-value=1.5e-09 Score=100.18 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=97.7
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
|+.++.|+||+++||++|+|.++++.|+|.+.+++......|++......+... ........+.+.. ++++|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~-----~~~~~~~~v~~~~---p~~~~ 73 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGG-----PPRSFKPRVTEVE---PPRRL 73 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCC-----CcEEEEEEEEEEc---CCCEe
Confidence 788999999999999999999999999999887766422234454332221110 0112223334443 36899
Q ss_pred EEEEEcccc--ceeeEEEEEEecCCCCeeEEEEEEEEec-CCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 176 YFSMVDGDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIP-RLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 176 ~F~~veGDf--k~f~GsW~Lepl~~g~gT~LtY~l~V~P-~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
.|+...|+. -...+.|+|++.+ +++|++++...+.. ..++...++...+++.+...|.+||+.||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 74 AWRGGLPFPGLLDGEHSFELEPLG-DGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEecCCCCcEeeEEEEEEEEEcC-CCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 999887753 3577899999974 47899999877643 22344567899999999999999999886
No 43
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.12 E-value=3.1e-09 Score=108.70 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=112.5
Q ss_pred CCceEEEEEEecCcceeEEEEEEEecCHHHHH-HHHhCccccccccccceEEEEEecCCCCeeEEEEEee--------ee
Q 004764 79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGL--------QR 149 (732)
Q Consensus 79 e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw-~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~--------~~ 149 (732)
..+++|+...+++....+++++.|++|++.+| ++|.|.+.+++|.+++.++++|+.-+++...++++.. .|
T Consensus 34 ~~gi~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~R 113 (209)
T cd08906 34 DNGDTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPR 113 (209)
T ss_pred CCCCEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCC
Confidence 47999999999877678999999999999998 6999999999999999999999876655433343321 11
Q ss_pred -eEEEEEEEE-----EEEEEEEeec--CCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH
Q 004764 150 -ALYWHIEAR-----VVLDLQELIH--SASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 221 (732)
Q Consensus 150 -il~~~~~ar-----vvLdv~E~~~--~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv 221 (732)
++......+ +.......++ ++..+.|+-. ..+.|.|.+.+..+.+.|.++|.+.++|++++|.+++
T Consensus 114 DfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~------~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lv 187 (209)
T cd08906 114 DFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGE------NGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLI 187 (209)
T ss_pred ceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEe------eeccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHH
Confidence 110000000 0000000000 1223333332 2456888887622246899999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHh
Q 004764 222 ERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 222 ~~~ir~~L~~~L~ALk~raEr 242 (732)
+.++.+.....|.+||++++.
T Consensus 188 N~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 188 HQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 44
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.12 E-value=2.8e-09 Score=108.84 Aligned_cols=157 Identities=11% Similarity=0.093 Sum_probs=114.6
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHH-HHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw-~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
++.++.|+.+.+++..+-++++..|++|++.|+ .++.|++.+++|.+++.++++|+.-+++...+++....... |.+.
T Consensus 33 ~~~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~-~~vs 111 (209)
T cd08905 33 AENGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAG-NVVG 111 (209)
T ss_pred cCCCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCC-CccC
Confidence 467899999999876678999999999999999 88889999999999999999998766555434433111000 0011
Q ss_pred EE-EEE--------------EEEEeec--CCCCceEEEEEEccccceeeEEEEEEecCC-CCeeEEEEEEEEecCCCccH
Q 004764 157 AR-VVL--------------DLQELIH--SASDRELYFSMVDGDFKKFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPA 218 (732)
Q Consensus 157 ar-vvL--------------dv~E~~~--~~~~rrI~F~~veGDfk~f~GsW~Lepl~~-g~gT~LtY~l~V~P~~piP~ 218 (732)
-| .+. .....++ ++..+.|+. ....|.|.|+|++. .+.|.++|.+.++|++++|.
T Consensus 112 ~RD~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~-------~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~ 184 (209)
T cd08905 112 PRDFVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRA-------ENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPK 184 (209)
T ss_pred ccceEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEE-------EeeccEEEEEECCCCCCceEEEEEEeecCCCCCCH
Confidence 11 000 0000000 122333333 44669999999852 26899999999999999999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 219 IFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 219 ~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++.++.+.....|.+||++++.
T Consensus 185 ~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 185 SIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred HHHHHHhHHhHHHHHHHHHHHHhc
Confidence 999999999999999999998863
No 45
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=1e-09 Score=103.10 Aligned_cols=135 Identities=17% Similarity=0.181 Sum_probs=89.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEE-----eeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-----RENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLe-----r~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
+++.++.|+||++.||++|+|+++||+|+|......+.. ..++..++..... +.. +.+..+++ ...++++
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-g~~-~~~~~~v~---~~~p~~~ 75 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLD-GGP-YRITNHVV---AFEENRL 75 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcC-CCc-eEEEEEEE---EECCCCE
Confidence 377899999999999999999999999998643222221 2233344433322 322 34444422 2246789
Q ss_pred EEEEEEe--cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHH
Q 004764 420 ISFEQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 420 Isf~~ve--Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~l--v~r~lr~~l~~~L~ALK~rAE 487 (732)
|+|+... .........|+|++.++|+|+|+++..+...+ ....+ +...+.++....|..|++.+|
T Consensus 76 l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~---~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 76 IAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAVT---DLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCCh---hhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 9998652 22335677889999887889999998876421 12222 335567888999999998875
No 46
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=3.1e-09 Score=94.76 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=95.7
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
++.++.|+||++.||++|+|+++|++|+|.+..++++.. .+............ ..........+.+.. .+..+
T Consensus 1 ~~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~---~~~~~ 73 (141)
T cd07812 1 VEASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGG-GEGGVGARFVGGRK---GGRRLTLTSEVTEVD---PPRPG 73 (141)
T ss_pred CcEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCC-CCccceeEEEEEec---CCccccceEEEEEec---CCCce
Confidence 357899999999999999999999999999999988753 22221111010000 000111222333332 25689
Q ss_pred EEEEEccccc-eeeEEEEEEecCCCCeeEEEEEEEEecCCCc---cHHHHHHHHHhCHHHHHHHHHHH
Q 004764 176 YFSMVDGDFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACR 239 (732)
Q Consensus 176 ~F~~veGDfk-~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi---P~~Lv~~~ir~~L~~~L~ALk~r 239 (732)
+|....+++. .+.+.|.+++.+ +++|+|+|++.+.+..+. +..++.+.++..+...+.+++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 74 RFRVTGGGGGVDGTGEWRLEPEG-DGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred EEEEecCCCCcceeEEEEEEECC-CCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 9998887764 899999999975 348999999999999987 56777888887777777777663
No 47
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.10 E-value=1.6e-09 Score=102.30 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=83.7
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCe-----eEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR-----IWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggr-----irv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
++.++.|+||++.||+.++|.+++++|+|.+.+++++.. .++. ...++... +.+ ....+.+++++.
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~-~~~~~~~G~~~~~~~~~---~~~--~~~w~~~it~~~--- 71 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGR-TPGLIYGGARVTYRLRH---FGI--PQRWTTEITEVE--- 71 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEec-CCCcccCCcEEEEEEEe---cCC--ceEEEEEEEEEc---
Confidence 357899999999999999999999999999999999853 3222 11222211 111 122334444443
Q ss_pred CCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH
Q 004764 171 SDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 221 (732)
Q Consensus 171 ~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv 221 (732)
+++++.++++.|.|+.+++.|.+++.+ +||+|++++++++.+.+-..++
T Consensus 72 p~~~f~~~~~~G~~~~w~h~~~f~~~~--~gT~vt~~v~~~~p~g~lg~~~ 120 (137)
T cd07820 72 PPRRFVDEQVSGPFRSWRHTHRFEAIG--GGTLMTDRVEYRLPLGPLGRLA 120 (137)
T ss_pred CCCeEEEEeccCCchhCEEEEEEEECC--CceEEEEEEEEeCCchhHHHHH
Confidence 367899999999999999999999964 5899999999998654444443
No 48
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.05 E-value=5.7e-09 Score=106.01 Aligned_cols=164 Identities=11% Similarity=0.022 Sum_probs=114.6
Q ss_pred cCC-ceEEEEEEecCcceeEEEEEEEecCHHHHHH-HHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 78 EQR-KVHCEVEVVSWRERRIKAEMLVNADVDSVWN-ALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 78 ~e~-~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~-VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
++. ++.|+.+.+++..+-++++..|++|++.|+. ++.|.+..++|.+++.++++++.-+++...++.+.... ..|..
T Consensus 31 ~~~~~i~i~~r~~~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~-~~~~v 109 (208)
T cd08868 31 NTTWGDVVYSRNVPGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEA-GGGLV 109 (208)
T ss_pred ecCCCCEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCc-CCCcc
Confidence 456 9999999999866679999999999999985 67899999999999999999988665543344332111 00111
Q ss_pred EEEEEEEEEEeecCCCCceEEEEEEc--------cc--cceeeEEEEEEecCC-CCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 156 EARVVLDLQELIHSASDRELYFSMVD--------GD--FKKFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 156 ~arvvLdv~E~~~~~~~rrI~F~~ve--------GD--fk~f~GsW~Lepl~~-g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
..|=.+.++........-.|....++ |- ...+.|.|.++|.+. .++|.++|.+.++|++++|.++++.+
T Consensus 110 s~RDfV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~ 189 (208)
T cd08868 110 SPRDFVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQA 189 (208)
T ss_pred cccceEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehh
Confidence 11111111111100001112222221 10 144669999999863 26799999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHh
Q 004764 225 IRSDLPVNLQALACRAER 242 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr 242 (732)
+...+...+.+||+.++.
T Consensus 190 ~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 190 LASVLLDFMKHLRKRIAT 207 (208)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999999999998875
No 49
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.01 E-value=8.3e-09 Score=95.54 Aligned_cols=135 Identities=21% Similarity=0.174 Sum_probs=96.6
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
|..++.|+||++.||++|+|+++|+.|+|++..+.+ ....||..+....+... . .......+++.. ++++|
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~-~~~~Gg~~~~~~~~~~g---~--~~~~~~~i~~~~---~~~~i 72 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEM-DLRVGGRWFFFMTGPDG---E--EGWVSGEVLEVE---PPRRL 72 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEE-cccCCceEEEEEECCCC---C--EEeccEEEEEEc---CCCeE
Confidence 678999999999999999999999999997333333 22344544333222110 0 112223334443 35889
Q ss_pred EEEEEccc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 176 YFSMVDGD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 176 ~F~~veGD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.|+...++ +....+.|+|++.+ ++|+|+|.....+... |.......+++....+|..||+.+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 73 VFTWAFSDETPGPETTVTVTLEETG--GGTRLTLTHSGFPEED-AEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred EEEecccCCCCCCceEEEEEEEECC--CCEEEEEEEEccChHh-HHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 99999874 57789999999975 6799999999877632 25567788888999999999999884
No 50
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=98.95 E-value=4.8e-08 Score=99.60 Aligned_cols=161 Identities=11% Similarity=0.004 Sum_probs=112.3
Q ss_pred cCCceEEEEEEecC-cceeEEEEEEE-ecCHHHHHHHHhCccccccccccceEEEEEecCCC-CeeEEEEEeeeeeEEEE
Q 004764 78 EQRKVHCEVEVVSW-RERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLACSGRIPCPYP-GRIWLEQRGLQRALYWH 154 (732)
Q Consensus 78 ~e~~v~v~v~~v~~-~~rrV~asi~V-~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g-grirv~Qvg~~~il~~~ 154 (732)
++.+|+|+.+.+.+ +...+++...+ ++|++.++++|.|.+..++|.+.+.+.++|+..++ +.-.++..-... |.
T Consensus 28 ~~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P---~P 104 (207)
T cd08911 28 EKKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWP---KP 104 (207)
T ss_pred EcCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECC---CC
Confidence 67789999999985 45678897766 99999999999999999999999999999986332 322233322111 10
Q ss_pred EEE-EEEEEEEEeecCCCCce--EEEEEEc--------cc--cceeeEEEEEEecC--CCCeeEEEEEEEEecCCCccHH
Q 004764 155 IEA-RVVLDLQELIHSASDRE--LYFSMVD--------GD--FKKFEGKWSIKSGT--RSSTTTLSYEVNVIPRLNFPAI 219 (732)
Q Consensus 155 ~~a-rvvLdv~E~~~~~~~rr--I~F~~ve--------GD--fk~f~GsW~Lepl~--~g~gT~LtY~l~V~P~~piP~~ 219 (732)
+.- ..++...-... +.... |....+. |- ...+.|.|.++|.+ ..++|.++|....+|++++|.+
T Consensus 105 ~s~RD~V~~r~~~~~-~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~ 183 (207)
T cd08911 105 FANRDYVYVRRYIID-EENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSY 183 (207)
T ss_pred CCCccEEEEEEEEEc-CCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHH
Confidence 000 01111111111 11111 2222222 11 36688999999974 2468999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Q 004764 220 FLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 220 Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+++.+..+.++..|..|++.+.+
T Consensus 184 lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 184 ITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHhc
Confidence 99999999999999999997754
No 51
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.94 E-value=3.2e-08 Score=101.07 Aligned_cols=161 Identities=13% Similarity=0.090 Sum_probs=115.4
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
+..+++++.+..+++ ...++++..|++|++.++++|.|.+.+++|+|.+.++++++..+.+...++..-. +-|.+.
T Consensus 29 ~~~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~---~PwPv~ 105 (215)
T cd08877 29 ESEGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVD---LPWPLS 105 (215)
T ss_pred cCCCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEe---CceEec
Confidence 457999999999998 6789999999999999999999999999999999999998765444332332211 111111
Q ss_pred EE-EEEEEEEeecCCCCceEEEEE--E-----------------c-cc--cceeeEEEEEEecCCCCeeEEEEEEEEecC
Q 004764 157 AR-VVLDLQELIHSASDRELYFSM--V-----------------D-GD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPR 213 (732)
Q Consensus 157 ar-vvLdv~E~~~~~~~rrI~F~~--v-----------------e-GD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~ 213 (732)
.| .++...-.......+.|...+ + . |- ...+.|.|.|+|.+ .+.|.++|.+.++|+
T Consensus 106 ~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~-~~~t~v~~~~~~DP~ 184 (215)
T cd08877 106 NREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS-PTKCYLRFVANVDPK 184 (215)
T ss_pred ceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC-CCCeEEEEEEEcCCC
Confidence 11 111111000000122221111 1 1 11 25678999999986 578999999999999
Q ss_pred CC-ccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 214 LN-FPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 214 ~p-iP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+. +|.++++.+.++....+|.+|++.|+.
T Consensus 185 g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 185 MSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99 999999999999999999999998864
No 52
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.91 E-value=6.4e-08 Score=98.96 Aligned_cols=145 Identities=13% Similarity=0.097 Sum_probs=103.9
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee--------e
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ--------R 149 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~--------~ 149 (732)
++.+|+|+.+.+++....+.++..|+||+++||++|.|.+++++|.+.+.++++++.-+++.-.++++... |
T Consensus 29 ~~~gI~Vy~k~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~R 108 (205)
T cd08874 29 LEKDVVIYYKVFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPR 108 (205)
T ss_pred cCCCEEEEEecCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCC
Confidence 67899999999888778899999999999999999999999999999999999998755554334443321 1
Q ss_pred -eEEEEEEEE----EEEEEEEeec---CCCC-ceEEEEEEccccceeeEEEEEEec---CCCCeeEEEEEEEEecC-CCc
Q 004764 150 -ALYWHIEAR----VVLDLQELIH---SASD-RELYFSMVDGDFKKFEGKWSIKSG---TRSSTTTLSYEVNVIPR-LNF 216 (732)
Q Consensus 150 -il~~~~~ar----vvLdv~E~~~---~~~~-rrI~F~~veGDfk~f~GsW~Lepl---~~g~gT~LtY~l~V~P~-~pi 216 (732)
++....... .++.++-.+. ++.+ +-|+. ..+.|.|.++|+ + .+.|+|+|.+.++|+ .-+
T Consensus 109 DfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~-------~~~~~gw~i~P~~~~g-~~~t~vty~~q~DPggg~i 180 (205)
T cd08874 109 DFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRG-------EILPSAWILEPVTVEG-NQYTRVIYIAQVALCGPDV 180 (205)
T ss_pred eEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEe-------eeEeeeEEEEECccCC-CCcEEEEEEEEECCCCCCC
Confidence 110000000 0111111111 1122 44555 446699999997 4 357999999999999 799
Q ss_pred cHHHHHHHHHhCHH
Q 004764 217 PAIFLERIIRSDLP 230 (732)
Q Consensus 217 P~~Lv~~~ir~~L~ 230 (732)
|++|++.++++...
T Consensus 181 P~~l~N~~~~~~p~ 194 (205)
T cd08874 181 PAQLLSSLSKRQPL 194 (205)
T ss_pred CHHHHhHHHHhccH
Confidence 99999999877644
No 53
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.84 E-value=1.8e-07 Score=95.33 Aligned_cols=162 Identities=9% Similarity=0.007 Sum_probs=110.3
Q ss_pred cCCc----eEEEEEEecCc-ceeEEEEEEE-ecCHHHHHHHHhCccccccccccceEEEEEecCCC-CeeEEEEEeeeee
Q 004764 78 EQRK----VHCEVEVVSWR-ERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLACSGRIPCPYP-GRIWLEQRGLQRA 150 (732)
Q Consensus 78 ~e~~----v~v~v~~v~~~-~rrV~asi~V-~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g-grirv~Qvg~~~i 150 (732)
+..+ ++|+.+.+.+. ...+++...+ ++|++.++++|.|.+..++|.+.+.+.++|+..++ +.-.++.+....
T Consensus 29 ~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P- 107 (209)
T cd08870 29 DKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFP- 107 (209)
T ss_pred hccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECC-
Confidence 4566 99999998854 5679999999 56999999999999999999999999999987433 221122222111
Q ss_pred EEEEEEEE-EEEEEEEeecCCCCceEEEEEEc-------cc--cceeeEEEEEEecC-CCCeeEEEEEEEEecCCCccHH
Q 004764 151 LYWHIEAR-VVLDLQELIHSASDRELYFSMVD-------GD--FKKFEGKWSIKSGT-RSSTTTLSYEVNVIPRLNFPAI 219 (732)
Q Consensus 151 l~~~~~ar-vvLdv~E~~~~~~~rrI~F~~ve-------GD--fk~f~GsW~Lepl~-~g~gT~LtY~l~V~P~~piP~~ 219 (732)
|.+.-| .|+..+.+........|..+.+. |- ++.+.|.|.++|.. .+++|.++|.+..+|++.||.+
T Consensus 108 --~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~w 185 (209)
T cd08870 108 --FPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRE 185 (209)
T ss_pred --CcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHH
Confidence 000000 11111100000000011111111 11 36788999999982 2578999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Q 004764 220 FLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 220 Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+++.+.++.++..|+.|++.+.+
T Consensus 186 lvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 186 LAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhc
Confidence 99999999999999999997743
No 54
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.83 E-value=1.5e-07 Score=96.57 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=111.8
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEE-ecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V-~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
.+++|+|+.+...++ ...+++...+ +++++.++++|.|.+..++|.+++.++++|+..+++.-.++.+-... |..
T Consensus 30 ~~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P---~pv 106 (222)
T cd08871 30 NKNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCP---KPL 106 (222)
T ss_pred cCCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECC---CCC
Confidence 567899999998876 4568888887 68999999999999999999999999999987554432222221110 000
Q ss_pred EEE-EEEEEEEeecCCCCceEEEEEEc--------ccc--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 156 EAR-VVLDLQELIHSASDRELYFSMVD--------GDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 156 ~ar-vvLdv~E~~~~~~~rrI~F~~ve--------GDf--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
..| .++. +..........|....+. |-+ ..+.|.|.+++.+ +++|.++|.+.++|++++|.++++.+
T Consensus 107 s~RDfV~~-r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-~~~t~vt~~~~~Dp~G~IP~~lvN~~ 184 (222)
T cd08871 107 KNRDFVNL-RSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG-PKGCTLTYVTQNDPKGSLPKWVVNKA 184 (222)
T ss_pred CCCeEEEE-EEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECC-CCCEEEEEEEecCCCCCcCHHHHHHH
Confidence 000 0100 000000000011111111 111 3456889999986 57899999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHhhc
Q 004764 225 IRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr~~ 244 (732)
+.+..+..|.+|++.+++..
T Consensus 185 ~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 185 TTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999753
No 55
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.78 E-value=9.4e-08 Score=89.82 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=83.9
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEe----cCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIP----CPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe----~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
+|+.++.|+||++.||++|+|+++|++|.|......+.. ..-|++.++...+... .+.+. ..+.+..
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~--~~~~~----~~v~~~~--- 71 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGG--PYRIT----NHVVAFE--- 71 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCC--ceEEE----EEEEEEC---
Confidence 478999999999999999999999999998643222221 1123333322221111 11122 2233433
Q ss_pred CCceEEEEEEc-c-ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH--HHHHHhCHHHHHHHHHHHHH
Q 004764 171 SDRELYFSMVD-G-DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL--ERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 171 ~~rrI~F~~ve-G-Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv--~~~ir~~L~~~L~ALk~raE 241 (732)
++++|.|+..- + ........|+|++.+ +++|+|+++..+... .....+. ...........|..|++.+|
T Consensus 72 p~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~g~T~vt~~~~~~g~-~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 72 ENRLIAWRPGPAGQEPGGHRWRWELEPIG-PGRTRVTETYDWSAV-TDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred CCCEEEEEccCCCCCCCceeEEEEEEECC-CCcEEEEEEEeccCC-hhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 46889998652 2 234566789999975 468999999876533 2222222 23356677788888888664
No 56
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.74 E-value=8.8e-07 Score=85.62 Aligned_cols=111 Identities=17% Similarity=0.421 Sum_probs=82.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCc-c-cccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYET-L-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~-y-Pef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
.++.++.|+||+++||+++.|+.+ . +.|.|.++++++++.++ |.+|.+.....+ ....+..+ ++...+..++|
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~-~~~~~kE~--l~~~D~~~~~~ 78 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG-KVKYVKER--IDAVDEENKTY 78 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCC-cceEEEEE--EEEEcccccEE
Confidence 367899999999999999999994 5 56888999999987652 345554433222 11223344 23333446899
Q ss_pred EEEEEecCC-----cceeEEEEEEEcCCCeEEEEEEEEEEecc
Q 004764 421 SFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQK 458 (732)
Q Consensus 421 sf~~veGdf-----k~f~G~W~Lep~gdG~TrVty~v~~ep~~ 458 (732)
.|+.++|++ +.|.+..+|.+.++++|.+.|.+.|++..
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~ 121 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKG 121 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECC
Confidence 999999854 47789999999988889999999999864
No 57
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=98.73 E-value=6.1e-07 Score=93.58 Aligned_cols=163 Identities=16% Similarity=0.153 Sum_probs=119.0
Q ss_pred cCCceEEEEEEecCcc-e--eEEEEEEEe-cCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee-----
Q 004764 78 EQRKVHCEVEVVSWRE-R--RIKAEMLVN-ADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ----- 148 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~-r--rV~asi~V~-AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~----- 148 (732)
++.+|+|+.+.+.+.. . .+++...|+ ++++.++++|.|.+...+|..++.++++|+.-+++...+++....
T Consensus 33 ~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs 112 (235)
T cd08872 33 EEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAA 112 (235)
T ss_pred eCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCC
Confidence 5789999999988863 2 599999999 999999999999999999999999999998866665444553321
Q ss_pred -e-eEEEEEEEE--------------EEEEEEEeec--CCCCceEEEEEEc----cc-cceeeEEEEEEecCCCCeeEEE
Q 004764 149 -R-ALYWHIEAR--------------VVLDLQELIH--SASDRELYFSMVD----GD-FKKFEGKWSIKSGTRSSTTTLS 205 (732)
Q Consensus 149 -~-il~~~~~ar--------------vvLdv~E~~~--~~~~rrI~F~~ve----GD-fk~f~GsW~Lepl~~g~gT~Lt 205 (732)
| ++++. ..+ +++......+ ++..+.|+..+.. +- ...-.|.|.+.+ + +++|.++
T Consensus 113 ~RD~V~~~-~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~-~~~~~it 189 (235)
T cd08872 113 QRDALFVS-HIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-D-NILCKIT 189 (235)
T ss_pred CcEEEEEE-EEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-C-CCeEEEE
Confidence 1 11111 111 1111111111 1334556655422 21 233347799988 2 5789999
Q ss_pred EEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 206 YEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 206 Y~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
|...++|++++|+++++.+.++..|..|+.|-..+...
T Consensus 190 y~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 190 YVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred EEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998865
No 58
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.72 E-value=3.5e-07 Score=93.43 Aligned_cols=155 Identities=11% Similarity=0.048 Sum_probs=107.8
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEe-cCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee------e
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ------R 149 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~-AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~------~ 149 (732)
++.+|+|+.+.+.+. ...+++...+. ++++.++++|.|.+..++|.+.+.+ +++..+++.-.+++.-.. |
T Consensus 32 ~~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~~~i~y~~~k~PwPvs~R 109 (207)
T cd08910 32 ESSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDGETVIYWEVKYPFPLSNR 109 (207)
T ss_pred ecCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCCCEEEEEEEEcCCCCCCc
Confidence 567999999987766 56799999998 6999999999999999999999987 344333343223322211 1
Q ss_pred -eEEEEEEE------E---EE-EEEEEeec-CCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCcc
Q 004764 150 -ALYWHIEA------R---VV-LDLQELIH-SASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP 217 (732)
Q Consensus 150 -il~~~~~a------r---vv-Ldv~E~~~-~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP 217 (732)
+++..... . ++ ....+.+. +...+.|+. ..+.|.|.+++.+ .++|.++|....+|++.||
T Consensus 110 D~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv-------~~~~~~~~i~p~~-~~~t~i~~~~~~DPgG~IP 181 (207)
T cd08910 110 DYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRV-------KQYKQSLAIESDG-KKGSKVFMYYFDNPGGMIP 181 (207)
T ss_pred eEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEE-------EEEEEEEEEEeCC-CCceEEEEEEEeCCCCcch
Confidence 11110000 0 00 00001110 011222333 5688999999975 4689999999999999999
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 218 AIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 218 ~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.++++.+.++.++..|..|++.+.+
T Consensus 182 ~wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 182 SWLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 9999999999999999999997754
No 59
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.72 E-value=3.3e-07 Score=92.87 Aligned_cols=154 Identities=12% Similarity=-0.047 Sum_probs=104.6
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
++.+|+|+.+.+++. .+-++++..|+|+++.|++.|.|+. ++|.+++.++++++.-+++...++.+.... |..
T Consensus 26 ~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p---~pv 100 (197)
T cd08869 26 SSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSM---APH 100 (197)
T ss_pred cCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCC---CCC
Confidence 567999999999665 4568999999999999999998863 999999999999987655433233221110 000
Q ss_pred EEE-EEEE-EEEeecCCCCceEEEEEEc-------cc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 156 EAR-VVLD-LQELIHSASDRELYFSMVD-------GD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 156 ~ar-vvLd-v~E~~~~~~~rrI~F~~ve-------GD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
..| .++. ..........-.|.++-+. |- ...+.|.|.++|.+ .++|+|+|.+.++|++++|.++++..
T Consensus 101 ~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~-~~~t~vty~~~~Dp~G~iP~wl~N~~ 179 (197)
T cd08869 101 PTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCG-SGKSRVTHICRVDLRGRSPEWYNKVY 179 (197)
T ss_pred CCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECC-CCCeEEEEEEEECCCCCCCceeecch
Confidence 000 1110 0010000011123333332 11 14567999999985 57899999999999999999996666
Q ss_pred HHhCHHHHHHHHHH
Q 004764 225 IRSDLPVNLQALAC 238 (732)
Q Consensus 225 ir~~L~~~L~ALk~ 238 (732)
- .-++..|..||.
T Consensus 180 ~-~~~~~~~~~l~~ 192 (197)
T cd08869 180 G-HLCARELLRIRD 192 (197)
T ss_pred H-hHHHHHHHHHHh
Confidence 5 888899999987
No 60
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.70 E-value=6.4e-07 Score=91.56 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=105.1
Q ss_pred cCCceEEEEEE---ecCcceeEEEEEEEecCHHHHHHHHhCcccc--ccccccceEEEEEecCCCCeeEEEEEeeeeeEE
Q 004764 78 EQRKVHCEVEV---VSWRERRIKAEMLVNADVDSVWNALTDYERL--ADFVPNLACSGRIPCPYPGRIWLEQRGLQRALY 152 (732)
Q Consensus 78 ~e~~v~v~v~~---v~~~~rrV~asi~V~AP~e~Vw~VLTDYErl--peFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~ 152 (732)
...+++|+.+. +.+.. ++++..|+++++.|+++|.|.+.. ++|.+++.++++|+.-+++...++...-....+
T Consensus 29 ~~~~i~v~~~~~~~~~~~~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~ 106 (208)
T cd08903 29 RTNEVAVSWRPSAEFAGNL--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMK 106 (208)
T ss_pred cCCCEEEEeeecCCCCCcE--EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCC
Confidence 45699999994 44433 889999999999999999999876 999999999999998665543333211110000
Q ss_pred EEEEEEEEEEEEEeecCCCCceEEEE--EEcc-------c-cce----eeEEEEEEecCCCCeeEEEEEEEEecCCCccH
Q 004764 153 WHIEARVVLDLQELIHSASDRELYFS--MVDG-------D-FKK----FEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA 218 (732)
Q Consensus 153 ~~~~arvvLdv~E~~~~~~~rrI~F~--~veG-------D-fk~----f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~ 218 (732)
.+..|=.+.++-... ...+.|... .+.- + ++. +.|.|...+.+ .++|.++|.+.++|++++|.
T Consensus 107 -~vs~RDfV~~~~~~~-~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~-~~~t~v~~~~~~DpkG~iP~ 183 (208)
T cd08903 107 -IISPRDFVDVVLVKR-YEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGE-PDKTQLVSFFQTDLSGYLPQ 183 (208)
T ss_pred -CcCCCceEEEEEEEe-cCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCC-CCceEEEEEEEeccCCCcCH
Confidence 011111111111000 112223222 1211 1 122 45666555543 46899999999999999999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Q 004764 219 IFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 219 ~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++++.++.+.+...|.+||+.+.
T Consensus 184 ~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 184 TVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999764
No 61
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=98.69 E-value=1.4e-07 Score=95.21 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=108.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC-EEEE-EEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN-KVRI-LQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g-~~rv-~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
.......|.++++++|++++|++.|-+|+|||+++.|+++.++ .... ..+|+.++. ..+...++++ ++.-+.-
T Consensus 69 ~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~-E~y~S~Vt~~----~p~l~kt 143 (227)
T KOG3177|consen 69 AYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLD-ERYTSNVTCV----KPHLTKT 143 (227)
T ss_pred HHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCcccc-hhheeeeEEe----cccceEE
Confidence 3445557999999999999999999999999999999998843 3322 345666543 4567775543 4433322
Q ss_pred EEEe-cCCcceeEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 004764 423 EQVE-GDFDSFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 494 (732)
Q Consensus 423 ~~ve-Gdfk~f~G~W~Lep~g--dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~~~ 494 (732)
.-.+ +.|..+...|+|.|-. .+.|.|.|++.|+.. ..+-..+..-++......++.||.++|...+..-.
T Consensus 144 ~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~--S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~ 216 (227)
T KOG3177|consen 144 VCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFK--SLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPES 216 (227)
T ss_pred eeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 2333 6788999999999966 678999999999974 44656667777788889999999999999988744
No 62
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.67 E-value=6.3e-07 Score=91.82 Aligned_cols=141 Identities=9% Similarity=0.122 Sum_probs=95.8
Q ss_pred EEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEecc---cee-EEEEEEEEEEEEEeeCC
Q 004764 344 RCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCK---GLL-YMVLHARVVMDICEQHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW-~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~---gll-~~~~~~rvvLdv~e~~~ 417 (732)
..+.+...|++|++++| ++|.|.+.+++|++++.+++++++.+.... ++....- +.+ ..-|..... .....+
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~--~~~~~~ 126 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRR--IERRRD 126 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEE--EEecCC
Confidence 55788999999999998 689999999999999999999988654322 2222110 000 001111111 111112
Q ss_pred CeEEEE-EEe--------cCCc---ceeEEEEEEE-cCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 418 QEISFE-QVE--------GDFD---SFQGKWLFEQ-LGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 418 rrIsf~-~ve--------Gdfk---~f~G~W~Lep-~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
..|... .+. |-.+ ...|.|.+.+ .+++.|.++|.+.++|+ +.+|.++++.++.+.....+.+||+
T Consensus 127 ~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~--G~lP~~lvN~~~~~~~~~~~~~LR~ 204 (209)
T cd08906 127 RYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLK--GRLPRYLIHQSLAATMFEFASHLRQ 204 (209)
T ss_pred cEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 111 1111 4578888776 67788999999999996 5799999999999999999999999
Q ss_pred HHHh
Q 004764 485 YVEK 488 (732)
Q Consensus 485 rAE~ 488 (732)
+++.
T Consensus 205 ~~~~ 208 (209)
T cd08906 205 RIRD 208 (209)
T ss_pred HHhh
Confidence 9874
No 63
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=98.63 E-value=1.4e-06 Score=91.20 Aligned_cols=143 Identities=14% Similarity=0.058 Sum_probs=98.6
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee--------e
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ--------R 149 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~--------~ 149 (732)
+..+|+|+...- .....+++++.|++|++.|+++|.|.+++++|.+++.++++|+.-+++. .++++-.. |
T Consensus 66 ~~~gI~Vyt~~~-s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~R 143 (240)
T cd08913 66 EKNQVRLYTLEE-DKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQ 143 (240)
T ss_pred ccCCEEEEEEeC-CCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-EEEEEecCCCCCCCCCC
Confidence 568999999543 3346789999999999999999999999999999999999998865554 35543211 1
Q ss_pred -eEEEEEEEE---------EEEEEEEeec-CCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccH
Q 004764 150 -ALYWHIEAR---------VVLDLQELIH-SASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA 218 (732)
Q Consensus 150 -il~~~~~ar---------vvLdv~E~~~-~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~ 218 (732)
++......+ +.+.....+. ++..+.|+. ..+.|-|.|.+.+ .+.|.|+|..+++|+ .+|.
T Consensus 144 DfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~-------~~~~ggw~i~p~~-~~~t~vtY~~~~dPG-~LP~ 214 (240)
T cd08913 144 DFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRG-------ETLCSGFCIWEES-DQLTKVSYYNQATPG-VLPY 214 (240)
T ss_pred eEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEe-------eecccEEEEEECC-CCcEEEEEEEEeCCc-cccH
Confidence 110000000 1111111111 122333333 4467999999975 578999999999998 9999
Q ss_pred HHHHHHHHhCHHH
Q 004764 219 IFLERIIRSDLPV 231 (732)
Q Consensus 219 ~Lv~~~ir~~L~~ 231 (732)
++++.++.+....
T Consensus 215 ~~~N~~~~~~p~~ 227 (240)
T cd08913 215 ISTDIAGLSSEFY 227 (240)
T ss_pred HHhhhhhhccchh
Confidence 9999887765543
No 64
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.60 E-value=8.4e-07 Score=90.74 Aligned_cols=141 Identities=13% Similarity=0.168 Sum_probs=97.1
Q ss_pred EEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEecc---cee-EEEEEEEEEEEEEeeCC
Q 004764 344 RCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCK---GLL-YMVLHARVVMDICEQHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW-~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~---gll-~~~~~~rvvLdv~e~~~ 417 (732)
..+.++..|++|++.|+ .++.|++++++|++.|.+++++++.+... .+++.... +++ ..-+...... .....
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~--~~~~~ 126 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCA--KRRGS 126 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEE--EEcCC
Confidence 56778999999999999 88889999999999999999998765432 22222111 000 0011111110 01112
Q ss_pred CeEEE-EEEe--------cCCc--ceeEEEEEEEcCC--CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 418 QEISF-EQVE--------GDFD--SFQGKWLFEQLGS--HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 418 rrIsf-~~ve--------Gdfk--~f~G~W~Lep~gd--G~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
..+.. ..+. |-++ .+.|.|.|+|.++ +.|.++|.+..+|+ +.+|.++++.++.......+.+||+
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~Dpk--G~iP~~lvN~~~~~~~~~~~~~Lr~ 204 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLK--GWLPKSIINQVLSQTQVDFANHLRQ 204 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCC--CCCCHHHHHHHhHHhHHHHHHHHHH
Confidence 22211 1111 1122 4579999999865 78999999999996 5799999999999999999999999
Q ss_pred HHHh
Q 004764 485 YVEK 488 (732)
Q Consensus 485 rAE~ 488 (732)
+++.
T Consensus 205 ~~~~ 208 (209)
T cd08905 205 RMAS 208 (209)
T ss_pred HHhc
Confidence 9873
No 65
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.60 E-value=2.5e-06 Score=86.65 Aligned_cols=156 Identities=10% Similarity=-0.066 Sum_probs=108.5
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEecCHHHHHHHHhC--ccccccccccceEEEEEecCCCCeeEEEEEeee------
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTD--YERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ------ 148 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~AP~e~Vw~VLTD--YErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~------ 148 (732)
+..+++|+.+..+.. ...++++..|+++++.|+++|-| .+..+.|.+++.++++|+.-+++...++.....
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~v 108 (206)
T cd08867 29 TVKNITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLI 108 (206)
T ss_pred cCCCcEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCcc
Confidence 557899999864443 35699999999999999999999 888999999999999998766554333322110
Q ss_pred --e-eEEEEEEEE-----EEEEEE--Eeec-CCCCceEEEEEEccccceeeEEEEEEecCC-CCeeEEEEEEEEecCCCc
Q 004764 149 --R-ALYWHIEAR-----VVLDLQ--ELIH-SASDRELYFSMVDGDFKKFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNF 216 (732)
Q Consensus 149 --~-il~~~~~ar-----vvLdv~--E~~~-~~~~rrI~F~~veGDfk~f~GsW~Lepl~~-g~gT~LtY~l~V~P~~pi 216 (732)
| ++.....-+ .++... +.+. ++.++.|+- ....|-|.++|.+. .++|.++|-+.++|++++
T Consensus 109 s~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~-------~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i 181 (206)
T cd08867 109 SPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRG-------YNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI 181 (206)
T ss_pred CCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEE-------EeecCEEEEEECCCCCCceEEEEEEEeccCCCC
Confidence 1 111110000 000000 0010 111222333 33568999998752 367999999999999999
Q ss_pred cHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 217 PAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 217 P~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
|.++++.++.+.+...+.+||+++
T Consensus 182 P~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 182 PQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred cHHHHHhhhhhhHHHHHHHHHHhc
Confidence 999999999999999999999864
No 66
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.58 E-value=4.7e-06 Score=81.38 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=106.8
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
..++++++.+..... ...+++...|+++++.|+++|.|.+.++.|.+.+.++++++..+++...++.+-.... .+.
T Consensus 22 ~~~~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~---p~~ 98 (193)
T cd00177 22 EKDGVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPW---PVS 98 (193)
T ss_pred ECCcEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCC---ccC
Confidence 456899999998874 5679999999999999999999999999999999999999976554322332221110 001
Q ss_pred EEEEEEEEEeecCCCCceEEEEE--Ecc-------c-c--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 ARVVLDLQELIHSASDRELYFSM--VDG-------D-F--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 arvvLdv~E~~~~~~~rrI~F~~--veG-------D-f--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
.|-.+-+..... ...+.+.+.+ ++. + . ..+.|.|.+++.+ +++|+++|.+.++|++++|.++++.+
T Consensus 99 ~Rdfv~~~~~~~-~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~-~~~~~vt~~~~~D~~g~iP~~~~~~~ 176 (193)
T cd00177 99 PRDFVYLRRRRK-LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD-PGKTKVTYVLQVDPKGSIPKSLVNSA 176 (193)
T ss_pred CccEEEEEEEEE-cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC-CCCEEEEEEEeeCCCCCccHHHHHhh
Confidence 110000011000 0112222111 111 1 1 2346889999984 67899999999999999999999999
Q ss_pred HHhCHHHHHHHHHH
Q 004764 225 IRSDLPVNLQALAC 238 (732)
Q Consensus 225 ir~~L~~~L~ALk~ 238 (732)
+.+.+...+..++.
T Consensus 177 ~~~~~~~~~~~~~~ 190 (193)
T cd00177 177 AKKQLASFLKDLRK 190 (193)
T ss_pred hhhccHHHHHHHHH
Confidence 99888888777765
No 67
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.58 E-value=8.4e-07 Score=90.64 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=100.6
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEeccceeEEEEEEE-EEEE---EEee-C
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCKGLLYMVLHAR-VVMD---ICEQ-H 416 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~gll~~~~~~r-vvLd---v~e~-~ 416 (732)
.+.+..+..|++|++.+.++|.|.+.|++|+|+|.++++++..+.... .++.- . +.|.+..| .++. +... .
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~-~--~PwPv~~RD~v~~~~~~~~~~~ 121 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV-D--LPWPLSNREAVFRGFGVDRLEE 121 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE-e--CceEecceEEEEEEEEEeeecc
Confidence 688999999999999999999999999999999999999877554322 22211 1 11111111 0000 0000 2
Q ss_pred CCeEE--EEEEe------------------cCC--cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhh
Q 004764 417 EQEIS--FEQVE------------------GDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYED 474 (732)
Q Consensus 417 ~rrIs--f~~ve------------------Gdf--k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~ 474 (732)
++.|. .+.+. |.. ..+.|.|.|+|.+++.|.++|.+.++|++ .++|.++++.+.+..
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g-~~IP~~liN~~~k~~ 200 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKM-SLVPKSLLNFVARKF 200 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCc-ccCCHHHHHHHHHHH
Confidence 23232 22221 111 25689999999999999999999999863 459999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 004764 475 LPSNLCAIRDYVEK 488 (732)
Q Consensus 475 l~~~L~ALK~rAE~ 488 (732)
...++.+|++.|++
T Consensus 201 ~~~~~~~l~k~~~~ 214 (215)
T cd08877 201 AGLLFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
No 68
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.52 E-value=3.6e-06 Score=81.62 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=90.0
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
++.+..|++|+++||++|+|.|.+.+-+|.|++++.. ++......+-.-|.+-.++..++.+.....+++.|..+-.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~---g~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g~ 79 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN---GDEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITINGS 79 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec---CCeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEee
Confidence 5678899999999999999999999999999998864 3344332222224344566666554332345677766643
Q ss_pred e---cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 426 E---GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 426 e---Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
- +-|..+...-.+.+.++| |+|.|.+..+.. .+...+-.+.++..++.++..+-+-
T Consensus 80 G~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~g---g~laqlGsr~i~~~~~kli~~~~~~ 138 (146)
T COG3427 80 GGGAAGFADGTVDVQLEPSGEG-TRVNWFADANVG---GKLAQLGSRLIDSVARKLINRFFDC 138 (146)
T ss_pred cccccceeeeeeEEEEEEcCCC-cEEEEEEEcccc---HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3 145567888899998887 999999988752 2445565666655555555544433
No 69
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.50 E-value=2.4e-06 Score=79.05 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=84.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
++.++.|+||+++||++++|.++|++|++... ...--..|+...+...+. +. .....++ +++ .++++|+|+-.
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~G~~~~~~~~~~-~~--~~~~~~v-~~~--~~~~~l~~~~~ 74 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-VESDWKVGSAFEYRRGDD-GT--VDVEGEV-LES--DPPRRLVHTWR 74 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecccc-cccCCcCCCeEEEEeCCC-cc--cccceEE-EEe--cCCCeEEEEEe
Confidence 56789999999999999999999999998732 111122344444322221 11 1122221 112 46788888865
Q ss_pred ecC------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 426 EGD------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 426 eGd------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.+. .......|.|++.++ +|+|+++...-+ ++..+.....+....+|+.||+++|.
T Consensus 75 ~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 75 AVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFP------PGSPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred cCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCC------CchhHHHhhhcCHHHHHHHHHHHhcC
Confidence 422 125577889999765 598888766432 12246677788999999999999874
No 70
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=98.49 E-value=6.8e-06 Score=82.49 Aligned_cols=162 Identities=9% Similarity=0.015 Sum_probs=108.8
Q ss_pred CCceEEEEEEecC--cceeEEEEEEEecCHHH-HHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 79 QRKVHCEVEVVSW--RERRIKAEMLVNADVDS-VWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 79 e~~v~v~v~~v~~--~~rrV~asi~V~AP~e~-Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
+.++.++-+...+ ....+++...|+++++. +-.++.|.+..++|.+++.++++++.-+++...++.+-.... . ..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~-~-p~ 105 (206)
T smart00234 28 ENGDEVRSILSPGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVA-G-PV 105 (206)
T ss_pred CCcceEEEEccCCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEeccc-C-cC
Confidence 4566666676654 35679999999999986 778999999999999999999999875544322222211110 0 00
Q ss_pred EEEEEEEEEEe-ecCCCCceEEEEEEccc--------c--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 156 EARVVLDLQEL-IHSASDRELYFSMVDGD--------F--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 156 ~arvvLdv~E~-~~~~~~rrI~F~~veGD--------f--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
..|=.+.+... ........|..+.++.+ + ..+.|.|.+++.+ ++.|.++|-..++|++++|.++++.+
T Consensus 106 ~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~-~~~t~vt~~~~~D~~G~iP~~lvn~~ 184 (206)
T smart00234 106 SPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG-NGPSKVTWVSHADLKGWLPHWLVRSL 184 (206)
T ss_pred CCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC-CCCeEEEEEEEEecCCCccceeehhh
Confidence 11100000000 00011112222222211 1 4567999999986 45699999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHhh
Q 004764 225 IRSDLPVNLQALACRAERS 243 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr~ 243 (732)
.+......+..|++.++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 185 IKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 9999999999999987764
No 71
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=98.48 E-value=4e-06 Score=87.49 Aligned_cols=153 Identities=10% Similarity=-0.012 Sum_probs=97.7
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEA 157 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~a 157 (732)
+++||+|+++. ......+++++.+++|+++++++|.|.+++++|.+.+.++++|+.-+++.. ++++-.... .....-
T Consensus 63 dkdgIkVytr~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw-~Pvk~R 139 (236)
T cd08914 63 TVEKIKIYTLE-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIV-NNDKPK 139 (236)
T ss_pred ccCCEEEEEec-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-EEEEecCCC-CCCCCc
Confidence 77899999996 444678999999999999999999999999999999999999988655543 554321110 000111
Q ss_pred EEEEEEEEeecCCCCce--EEEEEEcc-------c---cce-eeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH-H
Q 004764 158 RVVLDLQELIHSASDRE--LYFSMVDG-------D---FKK-FEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE-R 223 (732)
Q Consensus 158 rvvLdv~E~~~~~~~rr--I~F~~veG-------D---fk~-f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~-~ 223 (732)
..++...-..+.+.+.. |..+.+.- + .+. +.|. .|++++ .++|.|+|.+.++| +.+|-+.++ .
T Consensus 140 D~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~-~~~~~VtY~~~~dP-g~lp~~~~n~~ 216 (236)
T cd08914 140 DLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAID-SNSCTVSYFNQISA-SILPYFAGNLG 216 (236)
T ss_pred eEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcC-CCcEEEEEEEEcCC-ccchheEEecc
Confidence 12221111111111111 12222211 1 134 6787 999985 57899999999999 999999874 2
Q ss_pred HHHhCHHHHHHHH
Q 004764 224 IIRSDLPVNLQAL 236 (732)
Q Consensus 224 ~ir~~L~~~L~AL 236 (732)
...+.+...+.+.
T Consensus 217 ~~~~~~~~~~~~~ 229 (236)
T cd08914 217 GWSKSIEETAASC 229 (236)
T ss_pred hhhhHHHHHHHHH
Confidence 2333344444433
No 72
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.45 E-value=5e-06 Score=84.56 Aligned_cols=142 Identities=15% Similarity=0.217 Sum_probs=97.0
Q ss_pred EEEEEEEEEcCCHHHHHH-HHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEeccceeEEEEEEE--EEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCKGLLYMVLHAR--VVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~-vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~gll~~~~~~r--vvLdv~e~~~rr 419 (732)
..+.+...|++|+++|++ ++.|++..++|.+.|.+++++++.++... ++...... ..+....| +.++.....+..
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCc-CCCcccccceEEEEEEEecCCe
Confidence 458888899999999986 67799999999999999999988654433 22221110 00000110 101111111222
Q ss_pred --EEEEEEe--------cCCc--ceeEEEEEEEcCC--CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 420 --ISFEQVE--------GDFD--SFQGKWLFEQLGS--HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 420 --Isf~~ve--------Gdfk--~f~G~W~Lep~gd--G~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
|....+. |-++ .+.|.|.|+|.++ +.|.++|.+..+|+ +++|.++++.++...+...+.+||++
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~--G~iP~~lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLK--GWLPQYLVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCC--CCCcceeeehhhHHHHHHHHHHHHHH
Confidence 2333333 1122 4569999999864 67999999999985 67999999999999999999999999
Q ss_pred HHh
Q 004764 486 VEK 488 (732)
Q Consensus 486 AE~ 488 (732)
+++
T Consensus 205 ~~~ 207 (208)
T cd08868 205 IAT 207 (208)
T ss_pred Hhh
Confidence 875
No 73
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.45 E-value=1.2e-05 Score=77.68 Aligned_cols=113 Identities=12% Similarity=0.269 Sum_probs=80.3
Q ss_pred eEEEEEEEecCHHHHHHHHhCccc-c-ccccccceEEEEEecC-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYER-L-ADFVPNLACSGRIPCP-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYEr-l-peFiP~v~~SeVLe~~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
.++.++.|+||+++||+++.|+++ + +.|.|.++++++++.. +.|.+|.+..+...-..+ +...+.+.. +.
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~-----~kE~l~~~D--~~ 74 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKY-----VKERIDAVD--EE 74 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceE-----EEEEEEEEc--cc
Confidence 478999999999999999999994 5 5678888999887642 123445443322210000 112222222 45
Q ss_pred CceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC
Q 004764 172 DRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN 215 (732)
Q Consensus 172 ~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p 215 (732)
.++|.|++++|+ |+.|.+..+|.+.+ +++|.+.|++.++|.-.
T Consensus 75 ~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~-~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 75 NKTYKYTVIEGDVLKDGYKSYKVEIKFVPKG-DGGCVVKWTIEYEKKGD 122 (148)
T ss_pred ccEEEEEEEecccccCceEEEEEEEEEEECC-CCCEEEEEEEEEEECCC
Confidence 899999999995 57889999999974 57899999999988765
No 74
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.44 E-value=6.4e-06 Score=84.58 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=97.6
Q ss_pred ceeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE--EEEEe-ccceeEEEEEEEEEEEEEeeC
Q 004764 341 GVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR--ILQEG-CKGLLYMVLHARVVMDICEQH 416 (732)
Q Consensus 341 g~~~~V~asI~I-~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r--v~q~g-~~gll~~~~~~rvvLdv~e~~ 416 (732)
+....+.+...| ++|++.++++|.|.+..++|.+.+.++++++..+.... ..... -..+...-+.... .....
T Consensus 44 ~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r---~~~~~ 120 (222)
T cd08871 44 SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLR---SWLEF 120 (222)
T ss_pred CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEE---EEEeC
Confidence 334667777776 68999999999999999999999999999987643322 11111 0000000111110 11111
Q ss_pred CCe--EEEEEEe--------cCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 417 EQE--ISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 417 ~rr--Isf~~ve--------Gdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
+.. |....+. |-++ .+.|.|.|++.++++|.++|....+|. +++|.++++.++......+|..|++
T Consensus 121 ~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~--G~IP~~lvN~~~~~~~~~~l~~l~k 198 (222)
T cd08871 121 GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPK--GSLPKWVVNKATTKLAPKVMKKLHK 198 (222)
T ss_pred CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCC--CCcCHHHHHHHHHHHhHHHHHHHHH
Confidence 122 2222222 2122 346889999998888999999999985 6799999999999999999999999
Q ss_pred HHHhhh
Q 004764 485 YVEKRE 490 (732)
Q Consensus 485 rAE~~~ 490 (732)
.+++-.
T Consensus 199 ~~~~y~ 204 (222)
T cd08871 199 AALKYP 204 (222)
T ss_pred HHHHHH
Confidence 888643
No 75
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.41 E-value=1.8e-05 Score=75.68 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=82.2
Q ss_pred EEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe--EEEEEEe
Q 004764 349 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE 426 (732)
Q Consensus 349 sI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr--Isf~~ve 426 (732)
++.|++|+++||++|+|++++..-+|+|++.+.+. +.........-|.+-.++..++.+.-. .++.. |.++...
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~i~~~~~g~~~~~~~-~~~~~~~~~~~g~g 77 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGPIKGTFDGEVRITEI-DPPESYTLEFEGRG 77 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCCCEEEEEEEEEEEEE-ETTTEEEEEEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEeccEEEEEEEEEEEEEc-CCCcceEeeeeccC
Confidence 57899999999999999999999999999988764 444333332233333556555443322 23443 5555443
Q ss_pred cC-CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 427 GD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 427 Gd-fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.. -....+.-++...+++.|+|.|+.+++..+ ....+.++++......+++.|-+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G---~la~~g~~~i~~~~~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 78 RGGGSSASANITLSLEDDGGTRVTWSADVEVGG---PLASLGQRLIESVARRLIEQFFENLER 137 (140)
T ss_dssp CTCCEEEEEEEEEEECCCTCEEEEEEEEEEEEC---HHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEEEEEEcCCCCCcEEEEEEEEEEcc---CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 113344445555555559999999998742 345566677777777776666655543
No 76
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.41 E-value=1.7e-05 Score=81.20 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=100.3
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee------e
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ------R 149 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~------~ 149 (732)
.+.++++...++..+ .+.++++++|+|+++.|++.|.|. ++.|.+++.++++|+.-+++.-.++++... |
T Consensus 34 ~~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~R 111 (204)
T cd08908 34 TSEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPAR 111 (204)
T ss_pred CCCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCc
Confidence 467788888887776 467999999999999999999888 799999999999999866554334444211 1
Q ss_pred -e--E-EEEEEEE---EEEEEE-EeecCCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH
Q 004764 150 -A--L-YWHIEAR---VVLDLQ-ELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 221 (732)
Q Consensus 150 -i--l-~~~~~ar---vvLdv~-E~~~~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv 221 (732)
+ + .|..... .++... ..++..+...|+ ...+.|.|.|+|.+ .++|+|+|.+.++|++.+|.+++
T Consensus 112 D~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR-------~~~~~~~w~i~P~g-~g~t~vtyi~~~DPgG~iP~W~~ 183 (204)
T cd08908 112 DYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVR-------VNVLLSRYLIEPCG-SGKSKLTYMCRIDLRGHMPEWYT 183 (204)
T ss_pred EEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceE-------EEEEeeEEEEEECC-CCcEEEEEEEEeCCCCCCcHHHH
Confidence 1 1 1100000 111111 111000111222 25578999999985 47899999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHH
Q 004764 222 ERIIRSDLPVNLQALAC 238 (732)
Q Consensus 222 ~~~ir~~L~~~L~ALk~ 238 (732)
+.+ -..+...|..||.
T Consensus 184 N~~-g~~~~~~~~~~r~ 199 (204)
T cd08908 184 KSF-GHLCAAEVVKIRD 199 (204)
T ss_pred hhH-HHHHHHHHHHHHh
Confidence 864 3445555555654
No 77
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.40 E-value=7.2e-06 Score=84.02 Aligned_cols=139 Identities=12% Similarity=0.150 Sum_probs=90.6
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEeccc--e--eEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCKG--L--LYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~g--l--l~~~~~~rvvLdv~e~~~r 418 (732)
..+.+...|++|+++||++|.|.+++++|.+.+++++|++..++... ++++.... . ...-|...... ....+.
T Consensus 45 ~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~--~~~~~~ 122 (205)
T cd08874 45 HGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVE--AKEGEL 122 (205)
T ss_pred ceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEE--EECCCc
Confidence 56778889999999999999999999999999999999987655443 33321111 0 00011111110 111121
Q ss_pred -eEEEEEEec---------CCc--ceeEEEEEEEc---CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 419 -EISFEQVEG---------DFD--SFQGKWLFEQL---GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 419 -rIsf~~veG---------dfk--~f~G~W~Lep~---gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
-|..+.+.- -.+ .+.|.|.++|. ++|.|+|+|.+.++|.+ +-+|.++++.++.+.... +..|+
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPgg-g~iP~~l~N~~~~~~p~~-~~~~~ 200 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCG-PDVPAQLLSSLSKRQPLV-IARLA 200 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCC-CCCCHHHHhHHHHhccHH-HHHHH
Confidence 233333321 111 56899999999 88899999999999962 458999999888766543 33444
Q ss_pred HHH
Q 004764 484 DYV 486 (732)
Q Consensus 484 ~rA 486 (732)
.+.
T Consensus 201 ~~~ 203 (205)
T cd08874 201 LFL 203 (205)
T ss_pred HHh
Confidence 443
No 78
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.39 E-value=3.6e-06 Score=83.44 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=101.6
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
-.++.+|+|++|++.||++-.|+|++|.||.-+.+++|++. ++ ..|....-.-+.|.-.++++-+ ..+.
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVldd---kr-SrW~~~ap~g~~v~Wea~it~d-------~~~e 138 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDD---KR-SRWKANAPLGLEVEWEAEITKD-------IPGE 138 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCC---Cc-cceeEcCCCCceEEEeehhhcc-------CCCc
Confidence 35889999999999999999999999999999999999753 33 1232222111222224444333 2478
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHh----CHHHHHHHHHHHHHhh
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRS----DLPVNLQALACRAERS 243 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~----~L~~~L~ALk~raEr~ 243 (732)
+|.|+-+.|.--..+|.-++++.+ |+.|.|..++...|..+.-..++.+++-+ .+..-|+..|..+|..
T Consensus 139 ~I~W~Sl~Ga~v~NsG~VrF~~~p-g~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~ 211 (217)
T COG5637 139 RIQWESLPGARVENSGAVRFYDAP-GDSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG 211 (217)
T ss_pred EEeeecCCCCcCCCCccEEeeeCC-CCceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence 999999999655567999999986 67899999999988888877777776654 5555666777766653
No 79
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=98.39 E-value=1.7e-05 Score=82.81 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=88.2
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE-
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE- 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~- 156 (732)
++.+|+|+.+. +.+...++++..|++|+++|+++|.|.+..++|.+.+.++++|+.-+++...+++..... |...
T Consensus 62 ~k~gIkVytr~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~P---wPvk~ 137 (235)
T cd08873 62 STTSVTLYTLE-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSL---TSEKP 137 (235)
T ss_pred cCCCEEEEEec-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCC---CCCCC
Confidence 77899999998 555667899999999999999999999999999999999999987554433344432210 0000
Q ss_pred EEEEEEEEEeecCCCC--ceEEEEEEc-------cc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCC
Q 004764 157 ARVVLDLQELIHSASD--RELYFSMVD-------GD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN 215 (732)
Q Consensus 157 arvvLdv~E~~~~~~~--rrI~F~~ve-------GD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p 215 (732)
-..++...-..+...+ -.|.++-+. .+ .+.+.|-|.|+|.+ .++|.|+|.++++|++.
T Consensus 138 RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~-~~~t~VtY~~~~dPg~~ 207 (235)
T cd08873 138 NDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDC-GTCTEVSYYNETNPKLL 207 (235)
T ss_pred ceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECC-CCcEEEEEEEEcCCCcc
Confidence 0011110100000111 123333332 11 25677999999985 57899999999999864
No 80
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.35 E-value=4.2e-06 Score=81.29 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=87.5
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-eCCCeEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEISF 422 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~~~rrIsf 422 (732)
+.+..+++|+||+++||++|+|.++|++|++.. ..-...|+..++...+. +. ..+..+ +.+ .++++|.|
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~~~~~G~~~~~~~~~~-~~--~~~~~~----v~e~~p~~~l~~ 80 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TGDLRVGGRVEFVMDDE-EG--PNATGT----ILACEPPRLLAF 80 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CCCcccCceEEEEecCC-CC--CccceE----EEEEcCCcEEEE
Confidence 679999999999999999999999999999943 11122344444332221 11 122232 222 35678998
Q ss_pred EEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 423 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 423 ~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
....++ ......|+|++.+ ++|+|++...+.+. ......+..+....|..|++++|+..
T Consensus 81 ~~~~~~-~~~~~~~~l~~~~-~gT~v~~~~~~~~~-------~~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 81 TWGEGG-GESEVRFELAPEG-DGTRLTLTHRLLDE-------RFGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EecCCC-CCceEEEEEEEcC-CCEEEEEEEeccCc-------hhhhhhhcccHHHHHHHHHHHHcCCC
Confidence 876554 3446788899876 56999998876542 13456667888999999999998654
No 81
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.31 E-value=2.5e-05 Score=79.77 Aligned_cols=140 Identities=6% Similarity=-0.001 Sum_probs=95.4
Q ss_pred EEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC--EEEEEEEecccee--EEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN--KVRILQEGCKGLL--YMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I-~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g--~~rv~q~g~~gll--~~~~~~rvvLdv~e~~~r 418 (732)
..+.+...+ ++|++++++++.|.+..++|.+.+.+.++++..++ ...+++....... ..-+....+ .....+.
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~--~~~~~~~ 127 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARR--LWESDDR 127 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEE--EEEcCCC
Confidence 568888888 56999999999999999999999999999988654 2222222111100 000111110 1111111
Q ss_pred e--EEEEEEe-------cC--CcceeEEEEEEEc--CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 419 E--ISFEQVE-------GD--FDSFQGKWLFEQL--GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 r--Isf~~ve-------Gd--fk~f~G~W~Lep~--gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
. |..+.+. |. +..+.|.|.++|. ++++|.+.|....+|. +.+|.++++.++...+...|+.|++.
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~--G~IP~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPD--GGIPRELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCC--CCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 2222222 12 1267899999998 7778999999888884 56999999999999999999999988
Q ss_pred HH
Q 004764 486 VE 487 (732)
Q Consensus 486 AE 487 (732)
+.
T Consensus 206 ~~ 207 (209)
T cd08870 206 LR 207 (209)
T ss_pred Hh
Confidence 74
No 82
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.30 E-value=3.5e-05 Score=75.23 Aligned_cols=138 Identities=11% Similarity=0.121 Sum_probs=93.6
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEE-EEE--eccceeEEEEEEEEEEEEEe-eCCC
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI-LQE--GCKGLLYMVLHARVVMDICE-QHEQ 418 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv-~q~--g~~gll~~~~~~rvvLdv~e-~~~r 418 (732)
...+.+...|++|+++|++++.|.+.++.|.+.+.++++++..++...+ +.. ....+....+.. +.... ..++
T Consensus 38 ~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~---~~~~~~~~~~ 114 (193)
T cd00177 38 LKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVY---LRRRRKLDDG 114 (193)
T ss_pred ceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEE---EEEEEEcCCC
Confidence 4678899999999999999999999999999999999999987653322 211 110000000111 00111 1223
Q ss_pred eEEE--EEEec--------CCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 419 EISF--EQVEG--------DFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 rIsf--~~veG--------dfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
.+.+ ..++. -.+ .+.+.|.|++.+++.|+++|...++|. +.+|.++++.++.......++.++..
T Consensus 115 ~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~--g~iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 115 TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPK--GSIPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCC--CCccHHHHHhhhhhccHHHHHHHHHh
Confidence 3222 22222 112 235779999998889999999999985 57899999999998888887777654
No 83
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.27 E-value=2.4e-05 Score=80.09 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=93.8
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcc--cccCcCCcEEEEEEeeCCEEE-EEEEecc---cee-EEEEEEEEEEEEEe-eCC
Q 004764 346 VVASITVKAPVSEVWNVMTAYETL--PEIVPNLAISKILSRENNKVR-ILQEGCK---GLL-YMVLHARVVMDICE-QHE 417 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~y--Pef~P~V~ssrVLer~~g~~r-v~q~g~~---gll-~~~~~~rvvLdv~e-~~~ 417 (732)
+.++.+|++++++|+++|.|.+++ ++|.+.|.+++++++-++... +.+.... +++ ..-+... +... ..+
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~~vs~RDfV~~---~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMKIISPRDFVDV---VLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCCCcCCCceEEE---EEEEecCC
Confidence 778999999999999999999887 999999999999998655433 2221110 000 0011111 1111 123
Q ss_pred CeEEEE--EEec--------CCcc----eeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 418 QEISFE--QVEG--------DFDS----FQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 418 rrIsf~--~veG--------dfk~----f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
..|... .+.. -++. ..|.|...+.++++|.++|.+.++|+ +.+|.++++.++.+.+...+..||
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS--GYLPQTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC--CCcCHHHHHHHhhHHHHHHHHHHH
Confidence 333332 2221 1222 45566666556678999999999996 679999999999999999999999
Q ss_pred HHHHh
Q 004764 484 DYVEK 488 (732)
Q Consensus 484 ~rAE~ 488 (732)
+.+.+
T Consensus 203 ~~~~~ 207 (208)
T cd08903 203 KAVKA 207 (208)
T ss_pred HHHhh
Confidence 98754
No 84
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=98.26 E-value=1.5e-05 Score=81.36 Aligned_cols=142 Identities=10% Similarity=-0.066 Sum_probs=95.1
Q ss_pred EEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--CEEEEEEEecccee--EEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLL--YMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I-~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll--~~~~~~rvvLdv~e~~~r 418 (732)
..+.+...+ ++|++.+++++.|.+..++|.+.+.+++++++.. +...+++....... ..-+.....+... ....
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~-~~~~ 123 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIID-EENK 123 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEc-CCCC
Confidence 457776656 9999999999999999999999999999998743 32222222111100 0001111111111 1112
Q ss_pred e--EEEEEEe--------cCCc--ceeEEEEEEEcC---CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 419 E--ISFEQVE--------GDFD--SFQGKWLFEQLG---SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 419 r--Isf~~ve--------Gdfk--~f~G~W~Lep~g---dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
. |..+.+. |.++ .+.|.|.++|.+ +++|.+.|....+|+ +.+|.++++.+..+.++..|+.|+
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg--G~IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG--VNIPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC--CccCHHHHHHHHHhhccHHHHHHH
Confidence 2 3333332 2222 678999999973 557888888877884 679999999999999999999999
Q ss_pred HHHHh
Q 004764 484 DYVEK 488 (732)
Q Consensus 484 ~rAE~ 488 (732)
+.+.+
T Consensus 202 ~a~~~ 206 (207)
T cd08911 202 NAALK 206 (207)
T ss_pred HHHhc
Confidence 98753
No 85
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.24 E-value=2.7e-05 Score=72.03 Aligned_cols=129 Identities=15% Similarity=0.023 Sum_probs=85.8
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
+..++.|+||++.||++|||.++|++|++.... ......|++......+. . .+ .....+.+.. .+++|
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~~--~~~~~~G~~~~~~~~~~-~--~~----~~~~~v~~~~---~~~~l 69 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTTV--ESDWKVGSAFEYRRGDD-G--TV----DVEGEVLESD---PPRRL 69 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheeccccc--ccCCcCCCeEEEEeCCC-c--cc----ccceEEEEec---CCCeE
Confidence 578999999999999999999999999988331 11223455543322211 0 01 1111222222 36788
Q ss_pred EEEEEccc------cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 176 YFSMVDGD------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 176 ~F~~veGD------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.|+...++ .....-.|.|++.+ ++|+|+++....+.. ......+++....+|..||+.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~t~l~~~~~~~~~~----~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 70 VHTWRAVWDPEMAAEPPSRVTFEIEPVG--DVVKLTVTHDGFPPG----SPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred EEEEecCCCcccCCCCCEEEEEEEEecC--CcEEEEEEecCCCCc----hhHHHhhhcCHHHHHHHHHHHhcC
Confidence 88876432 23567789999854 589998888875432 246677888999999999998873
No 86
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.24 E-value=2e-05 Score=79.90 Aligned_cols=146 Identities=18% Similarity=0.113 Sum_probs=95.4
Q ss_pred eeeeeeccCccccCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEe-c-cceeEEE
Q 004764 327 EVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEG-C-KGLLYMV 403 (732)
Q Consensus 327 Ev~~rr~D~l~e~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g-~-~gll~~~ 403 (732)
+|..+..++ +-....+.++..|+|++++|++.+.|.. ++|.+.+.+++++++.+... .+++.. . ..+...-
T Consensus 31 ~I~~k~~~~----~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RD 104 (197)
T cd08869 31 ELAFKKVDD----GHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRD 104 (197)
T ss_pred EEEEEeCCC----CCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCce
Confidence 566666532 2133668999999999999999998863 99999999999998865432 222221 1 1111011
Q ss_pred EEEEEEEEEEe--eCCC--eEEEEEEe-------cCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHH
Q 004764 404 LHARVVMDICE--QHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEV 470 (732)
Q Consensus 404 ~~~rvvLdv~e--~~~r--rIsf~~ve-------Gdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~ 470 (732)
|... +... .... .|.++.++ |-++ .+.|.|.++|.++++|+|+|.+.++|+ +.+|.++ ...
T Consensus 105 fV~~---r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~--G~iP~wl-~N~ 178 (197)
T cd08869 105 YVVL---RTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLR--GRSPEWY-NKV 178 (197)
T ss_pred EEEE---EEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCC--CCCCcee-ecc
Confidence 1111 1111 1122 34555553 2222 457999999998889999999999995 5688877 444
Q ss_pred HHhhHHHHHHHHHH
Q 004764 471 IYEDLPSNLCAIRD 484 (732)
Q Consensus 471 lr~~l~~~L~ALK~ 484 (732)
+..-+...|..||+
T Consensus 179 ~~~~~~~~~~~l~~ 192 (197)
T cd08869 179 YGHLCARELLRIRD 192 (197)
T ss_pred hHhHHHHHHHHHHh
Confidence 55778888888886
No 87
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=98.23 E-value=0.0001 Score=73.72 Aligned_cols=159 Identities=15% Similarity=0.058 Sum_probs=104.2
Q ss_pred CceEEEEEEecC----cceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeee--EEE
Q 004764 80 RKVHCEVEVVSW----RERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRA--LYW 153 (732)
Q Consensus 80 ~~v~v~v~~v~~----~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~i--l~~ 153 (732)
.+..+++..... ....+++...|+++++.++..|-|... +|.+.+.++++++.-+++...++.+..... ...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~ 105 (206)
T PF01852_consen 28 KNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVS 105 (206)
T ss_dssp TTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSS
T ss_pred CCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccCCCCCC
Confidence 334445555432 567799999999999988888887776 999999999999985555332222221110 000
Q ss_pred EEEEEEEEEEEEeecCCCCceEEEEEEcc--------c-c--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH
Q 004764 154 HIEARVVLDLQELIHSASDRELYFSMVDG--------D-F--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE 222 (732)
Q Consensus 154 ~~~arvvLdv~E~~~~~~~rrI~F~~veG--------D-f--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~ 222 (732)
.... +.+...... .....-|.++-++. . . ..+-+.|.+++.+ ++.|.++|...++|++++|.++++
T Consensus 106 ~RDf-v~~~~~~~~-~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~-~~~~~vt~~~~~D~~G~iP~~~~n 182 (206)
T PF01852_consen 106 PRDF-VFLRSWRKD-EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG-DGRTRVTYVSQVDPKGWIPSWLVN 182 (206)
T ss_dssp EEEE-EEEEEEEEC-TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET-TCEEEEEEEEEEESSSSSHHHHHH
T ss_pred CcEE-EEEEEEEEe-ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc-CCCceEEEEEEECCCCCChHHHHH
Confidence 0000 000000110 01111222322211 1 1 4566899999986 456999999999999999999999
Q ss_pred HHHHhCHHHHHHHHHHHHHhh
Q 004764 223 RIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 223 ~~ir~~L~~~L~ALk~raEr~ 243 (732)
.++.+.++..+..+++++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 183 MVVKSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 88
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=98.23 E-value=3.3e-05 Score=77.56 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=98.5
Q ss_pred eEEEEEEEEEcCCHHH-HHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEecccee-EEEEEEEEEEEEEe-eCCC-
Q 004764 343 HRCVVASITVKAPVSE-VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLL-YMVLHARVVMDICE-QHEQ- 418 (732)
Q Consensus 343 ~~~V~asI~I~APpE~-VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll-~~~~~~rvvLdv~e-~~~r- 418 (732)
...+.+...|+++++. +-+++.|.+..++|.+.|.++++++..++...+......... ...-..-+.++... ..+.
T Consensus 44 ~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~ 123 (206)
T smart00234 44 GEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGS 123 (206)
T ss_pred eEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCc
Confidence 4778999999999996 778999999999999999999999876443222111111100 01000011111111 1222
Q ss_pred -eEEEEEEe--------cCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 419 -EISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 419 -rIsf~~ve--------Gdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.|..+.+. |-++ .+.|.|.|+|.+++.|+++|....+|. +++|.++++.+........+..+++.++
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~--G~iP~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLK--GWLPHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecC--CCccceeehhhhhhhHHHHHHHHHHHHH
Confidence 23333333 1122 467899999999888999999999985 5799999999999999999999988876
Q ss_pred hh
Q 004764 488 KR 489 (732)
Q Consensus 488 ~~ 489 (732)
..
T Consensus 202 ~~ 203 (206)
T smart00234 202 KH 203 (206)
T ss_pred HH
Confidence 53
No 89
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.22 E-value=6.5e-05 Score=71.18 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=84.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+..+..|+||+++||++++|-+....|++. +..+++--+.|+..++...+..|.. +....++ +++ .++++|.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v-~e~--~p~~~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVF-LEI--EPPERIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEEE-EEE--cCCCEEE
Confidence 456788999999999999999999999852 2223332344555454444333432 2222221 222 4778999
Q ss_pred EEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 422 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 422 f~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
|....++. ...-.|+|++.+ ++|+|+++..+... ......+...+.......|..|++++++
T Consensus 78 ~t~~~~~~-~~~v~~~~~~~~-~gT~ltl~~~~~~~---~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 78 YDHGSGPP-RFRLTVTFEEQG-GKTRLTWRQVFPTA---AERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred EEeccCCC-cEEEEEEEEECC-CCEEEEEEEEcCCH---HHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 98654321 346778999977 56999998765321 0112223455677788889999888763
No 90
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.19 E-value=2.4e-05 Score=76.02 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=89.5
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
+.|+.++.|+||++.||++|+|.+++++|++... .+...|+.++.. .+... .......+.+.. ++.
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~----~~~~~G~~~~~~-~~~~~------~~~~~~~v~e~~---p~~ 76 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPGT----GDLRVGGRVEFV-MDDEE------GPNATGTILACE---PPR 76 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCCC----CCcccCceEEEE-ecCCC------CCccceEEEEEc---CCc
Confidence 5799999999999999999999999999999542 222234443222 11100 001112223332 467
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
+|.|+...++ ......|.|++. +++|+|+|.....|+. -....+...-...|..|++.+|+..
T Consensus 77 ~l~~~~~~~~-~~~~~~~~l~~~--~~gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 77 LLAFTWGEGG-GESEVRFELAPE--GDGTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEEEecCCC-CCceEEEEEEEc--CCCEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 8999887655 345678889985 4689999999997665 2356668888999999999999753
No 91
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.14 E-value=0.00014 Score=69.53 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=78.0
Q ss_pred EEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEE-EEeeeeeEEEEEEEEEEEEEEEeecCCCCceEE
Q 004764 98 AEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLE-QRGLQRALYWHIEARVVLDLQELIHSASDRELY 176 (732)
Q Consensus 98 asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~-Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~ 176 (732)
+++.|++|+++||+.|+|++++..-+|++++.+++ + ++.... .++ ...+...+ ...+.+.+... +...+|.
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~---~-~~~~~~~~v~-vG~i~~~~--~g~~~~~~~~~-~~~~~~~ 72 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKV---G-DEYKGKVKVK-VGPIKGTF--DGEVRITEIDP-PESYTLE 72 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEE---C-TEEEEEEEEE-SCCCEEEE--EEEEEEEEEET-TTEEEEE
T ss_pred CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeec---C-cEEEEEEEEE-eccEEEEE--EEEEEEEEcCC-CcceEee
Confidence 47899999999999999999999999999998775 3 443221 122 22233333 34444455442 1222255
Q ss_pred EEEEccc-cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 177 FSMVDGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 177 F~~veGD-fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++-.... --...+.-++...+.++ |+|+|++++.....+ +.+++++++.....+++.+-+..+
T Consensus 73 ~~g~g~~~~~~~~~~~~~~~~~~~~-T~v~~~~~~~~~G~l-a~~g~~~i~~~~~~l~~~f~~~l~ 136 (140)
T PF06240_consen 73 FEGRGRGGGSSASANITLSLEDDGG-TRVTWSADVEVGGPL-ASLGQRLIESVARRLIEQFFENLE 136 (140)
T ss_dssp EEEEECTCCEEEEEEEEEEECCCTC-EEEEEEEEEEEECHH-HHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCccceEEEEEEEEEcCCCCC-cEEEEEEEEEEccCH-HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6554321 22333444444443334 999999999977765 344455555555555555444433
No 92
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.13 E-value=5.8e-05 Score=70.71 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=79.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-eCCCeEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEISFE 423 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~~~rrIsf~ 423 (732)
.++.++.|+||+++||++++|.+.|++|++... .......+.+..+...+..+ ..+..+ +.+ .++++|.|.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g~~~~~~~~~---~~~~~~----i~~~~p~~~l~~~ 73 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATGEITYPGYEH---GVFPVT----VVEVDPPRRFSFR 73 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCcceeEEecCCCCc---cceEEE----EEEeCCCcEEEEE
Confidence 378899999999999999999999999999753 11111111111222211111 112222 222 467888888
Q ss_pred EEecC---------CcceeEEEEEEEcCCCeEEEEEEEE-EEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 424 QVEGD---------FDSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 424 ~veGd---------fk~f~G~W~Lep~gdG~TrVty~v~-~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
...+. -......|+|++.++ +|+|++... +...... ... .........-..+|..|++++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~~~~~-~~~-~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDALPAE-RRA-EAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCCCChH-HHH-HHHHhhhhhHHHHHHHHHHHhc
Confidence 64322 113457889999875 499999765 3211000 011 1334577888899999999876
No 93
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=98.11 E-value=6e-05 Score=79.11 Aligned_cols=129 Identities=7% Similarity=0.008 Sum_probs=83.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccc----eeEEEEEEEEEEEEEeeCCC-
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG----LLYMVLHARVVMDICEQHEQ- 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~g----ll~~~~~~rvvLdv~e~~~r- 418 (732)
..+.+...|++|+++||++|.|.+++++|.+++.+++++++.+....+++..... +...-+.......-......
T Consensus 81 ~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~ 160 (240)
T cd08913 81 LSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDP 160 (240)
T ss_pred cEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCcc
Confidence 4677888999999999999999999999999999999998854332333321111 00011111110000000110
Q ss_pred -eEEEEEEe--------cCC--cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhH
Q 004764 419 -EISFEQVE--------GDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDL 475 (732)
Q Consensus 419 -rIsf~~ve--------Gdf--k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l 475 (732)
.|..+++. |-. ..+.|.|.|.|.++|.|.|+|....+| +.+|.++++.++.+..
T Consensus 161 yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP---G~LP~~~~N~~~~~~p 225 (240)
T cd08913 161 YVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP---GVLPYISTDIAGLSSE 225 (240)
T ss_pred EEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC---ccccHHHhhhhhhccc
Confidence 13333333 111 156899999999989999999888876 3789989888876554
No 94
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.07 E-value=7.8e-05 Score=70.10 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=81.7
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC-----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V-----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
+..++.|+||+++||++++|-+.+..|+... ..++.--+.||..++.....++-....+...+ +++ .++++|
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~-~ei--~p~~~l 78 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTY-TEV--EPHKLI 78 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEE-EEE--CCCCEE
Confidence 5677899999999999999999999997542 22333234566655544333332111223332 222 467899
Q ss_pred EEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 421 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 421 sf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.|+... .....|+|++.+ ++|+|+.. +.+ .+. ........+-...|..|++++|+
T Consensus 79 ~~~~~~----~~~v~~~l~~~~-~gT~l~l~--~~~-----~~~-~~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 79 EYTMED----GREVEVEFTEEG-DGTKVVET--FDA-----ENE-NPVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEEcCC----CCEEEEEEEECC-CCEEEEEE--ECC-----CCC-CcHHHHHHHHHHHHHHHHHHhhC
Confidence 998543 246789999976 55999876 322 111 13345667888999999998873
No 95
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.06 E-value=8.6e-05 Score=76.15 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=92.6
Q ss_pred eeeeeeccCccccCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEeccceeEEEEE
Q 004764 327 EVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCKGLLYMVLH 405 (732)
Q Consensus 327 Ev~~rr~D~l~e~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~gll~~~~~ 405 (732)
|+++.+.++ +...+.+++++.|+|++++|++.+.|. ++.|.+++.++++++..+.... +++... ...+..-.
T Consensus 39 el~~~k~~~----gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~-~PwP~~~R 111 (204)
T cd08908 39 ELSYKKVSE----GPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQN-SMAPHPAR 111 (204)
T ss_pred EEEEeccCC----CCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEcc-CCCCCCCc
Confidence 667776542 444478999999999999999999888 8999999999999988653322 222210 00000000
Q ss_pred EEEEEEEEe--eCCCe--EEEEEEecC--------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHh
Q 004764 406 ARVVMDICE--QHEQE--ISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYE 473 (732)
Q Consensus 406 ~rvvLdv~e--~~~rr--Isf~~veGd--------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~ 473 (732)
.-++++... ..... |....+..+ ...+.|.|.|+|.++|+|+|+|...++|+ +.+|.++++ .+..
T Consensus 112 D~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg--G~iP~W~~N-~~g~ 188 (204)
T cd08908 112 DYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR--GHMPEWYTK-SFGH 188 (204)
T ss_pred EEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC--CCCcHHHHh-hHHH
Confidence 111110110 11121 222211100 12568999999999899999999999996 458876554 4566
Q ss_pred hHHHHHHHHHH
Q 004764 474 DLPSNLCAIRD 484 (732)
Q Consensus 474 ~l~~~L~ALK~ 484 (732)
-+...|..||+
T Consensus 189 ~~~~~~~~~r~ 199 (204)
T cd08908 189 LCAAEVVKIRD 199 (204)
T ss_pred HHHHHHHHHHh
Confidence 66666666665
No 96
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=98.06 E-value=5.6e-05 Score=78.99 Aligned_cols=145 Identities=11% Similarity=0.114 Sum_probs=96.9
Q ss_pred EEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEec-------cceeEE-EEEE--------
Q 004764 345 CVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGC-------KGLLYM-VLHA-------- 406 (732)
Q Consensus 345 ~V~asI~I~-APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~-------~gll~~-~~~~-------- 406 (732)
.+.+...|+ ++++++++++.|.+.+++|...+.+.+++++.+... .+++... ..+++. .+..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~ 132 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPN 132 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcccccc
Confidence 588999999 999999999999999999999999999998864332 2233210 111111 1100
Q ss_pred ----EEEEEEE-ee---CC--CeEEEEEEe-----cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHH
Q 004764 407 ----RVVMDIC-EQ---HE--QEISFEQVE-----GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI 471 (732)
Q Consensus 407 ----rvvLdv~-e~---~~--rrIsf~~ve-----Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~l 471 (732)
.+++... .. |+ .-+...... +.+..-.|.|.+.+ ++++|.++|...++|+ +++|.++++.+.
T Consensus 133 ~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPg--G~iP~wvvn~~~ 209 (235)
T cd08872 133 AHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPG--GWAPASVLRAVY 209 (235)
T ss_pred CCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCC--CCccHHHHHHHH
Confidence 0100000 00 11 222222211 11112237798988 5778999999999985 689999999999
Q ss_pred HhhHHHHHHHHHHHHHhhhCC
Q 004764 472 YEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 472 r~~l~~~L~ALK~rAE~~~~~ 492 (732)
++..+..|+.|-.++......
T Consensus 210 k~~~P~~l~~~~~~~~~~~~~ 230 (235)
T cd08872 210 KREYPKFLKRFTSYVQEKTKG 230 (235)
T ss_pred HhhchHHHHHHHHHHHHhcCC
Confidence 999999999999999876544
No 97
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.05 E-value=0.00028 Score=67.41 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=83.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+.-++.|+||+++||++++|-+.+.+|++. +..+++--+.|+..++...+..|.. +....++ +++ .++++|.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v-~~i--~p~~~l~ 77 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEE-FPNPGCF-LEV--VPGERLV 77 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCCE-ecceEEE-EEE--eCCCEEE
Confidence 456778999999999999999999999873 3334444456666665544444432 2222331 222 4778999
Q ss_pred EEEEec-CC---c--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 422 FEQVEG-DF---D--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 422 f~~veG-df---k--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
|...-. .. . ...-.|+|++.+ ++|+|+.+..+.. ....+.....-+...-...|..|++++|.
T Consensus 78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~---~~~~~~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 78 FTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWT---EADRKQHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCC---HHHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 984321 11 1 145689999976 4599988643321 00111222233467888999999988763
No 98
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=98.03 E-value=8.4e-05 Score=77.74 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=74.2
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEecc--ceeEEEEEEEEEEEEEeeCC--C
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCK--GLLYMVLHARVVMDICEQHE--Q 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~--gll~~~~~~rvvLdv~e~~~--r 418 (732)
..+.+...|++|+++||++|.|.+++++|.+++.+++++++.++... +.++... .+...-+.......-..+.. -
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~ 156 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPY 156 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeE
Confidence 56888888999999999999999999999999999999987654332 3332111 00001111111000000111 1
Q ss_pred eEEEEEEe--------cCC--cceeEEEEEEEcCCCeEEEEEEEEEEe
Q 004764 419 EISFEQVE--------GDF--DSFQGKWLFEQLGSHHTLLKYSVESKM 456 (732)
Q Consensus 419 rIsf~~ve--------Gdf--k~f~G~W~Lep~gdG~TrVty~v~~ep 456 (732)
.|.++.+. |-+ ..+.|.|.|.|.++|+|.|+|...++|
T Consensus 157 ~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dP 204 (235)
T cd08873 157 KVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNP 204 (235)
T ss_pred EEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCC
Confidence 34555554 111 267899999999989999999999998
No 99
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.02 E-value=0.00022 Score=72.55 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=94.8
Q ss_pred EEEEEEEEEcCCHHHHHHHHhc--cCcccccCcCCcEEEEEEeeCCEEE-EEEEecc---ceeEEEEEEEEEEEEE-eeC
Q 004764 344 RCVVASITVKAPVSEVWNVMTA--YETLPEIVPNLAISKILSRENNKVR-ILQEGCK---GLLYMVLHARVVMDIC-EQH 416 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtD--yE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~---gll~~~~~~rvvLdv~-e~~ 416 (732)
..+.++..|++++++|+++|.| .+..+.|.+.+.+++++++.+.... +...... +++ .-..-+.++.. ...
T Consensus 46 ~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~v--s~RDfV~~~~~~~~~ 123 (206)
T cd08867 46 HLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLI--SPRDFVDLVYVKRYE 123 (206)
T ss_pred EEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCcc--CCcceEEEEEEEEeC
Confidence 4588999999999999999999 8999999999999999988654332 2221100 111 00000101110 011
Q ss_pred CC--eEEEEEEe--------cCCc--ceeEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 004764 417 EQ--EISFEQVE--------GDFD--SFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI 482 (732)
Q Consensus 417 ~r--rIsf~~ve--------Gdfk--~f~G~W~Lep~g--dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~AL 482 (732)
+. .+....++ |-++ ...|-|.++|.+ ++.|.++|-+.++|+ +.+|.++++.++...+...+.+|
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~l 201 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLR--GMIPQSLVESAMPSNLVNFYTDL 201 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccC--CCCcHHHHHhhhhhhHHHHHHHH
Confidence 21 23334442 2222 346889999864 467999999999996 67999999999999999999999
Q ss_pred HHHH
Q 004764 483 RDYV 486 (732)
Q Consensus 483 K~rA 486 (732)
|+++
T Consensus 202 r~~~ 205 (206)
T cd08867 202 VKGV 205 (206)
T ss_pred HHhc
Confidence 9875
No 100
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.01 E-value=5.7e-05 Score=77.28 Aligned_cols=139 Identities=9% Similarity=-0.054 Sum_probs=90.7
Q ss_pred EEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEEeeC-CEEEEEEEecccee--EEEEEEEEEEEEEee-CCC
Q 004764 344 RCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSREN-NKVRILQEGCKGLL--YMVLHARVVMDICEQ-HEQ 418 (732)
Q Consensus 344 ~~V~asI~I~-APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~-g~~rv~q~g~~gll--~~~~~~rvvLdv~e~-~~r 418 (732)
..+.+...++ ++++.+++++.|.+.+++|.+.|.++ ++... +...+++....... ..-+..... ..... ..+
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~--~~~~~~~~~i~y~~~k~PwPvs~RD~V~~r~-~~~~~~~~~ 125 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKEL--YEKECDGETVIYWEVKYPFPLSNRDYVYIRQ-RRDLDVEGR 125 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhh--eeecCCCCEEEEEEEEcCCCCCCceEEEEEE-eccccCCCC
Confidence 5688888898 69999999999999999999999874 43332 22212221110000 000100000 00001 111
Q ss_pred eE---EEEEE--------ecCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 419 EI---SFEQV--------EGDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 rI---sf~~v--------eGdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
.+ ..+.+ +|-++ .+.|.|.|++.++++|.++|....+|. +.+|.++++.+..+.+...|+.|++.
T Consensus 126 ~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg--G~IP~wlvN~~~~~~~~~~l~~l~ka 203 (207)
T cd08910 126 KIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG--GMIPSWLINWAAKNGVPNFLKDMQKA 203 (207)
T ss_pred eEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC--CcchHHHHHHHHHHhhHHHHHHHHHH
Confidence 11 11111 12222 678999999988888999999999985 67999999999999999999999998
Q ss_pred HH
Q 004764 486 VE 487 (732)
Q Consensus 486 AE 487 (732)
+.
T Consensus 204 ~~ 205 (207)
T cd08910 204 CQ 205 (207)
T ss_pred Hh
Confidence 74
No 101
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=97.97 E-value=0.00023 Score=69.31 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=83.9
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEE---EEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWL---EQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv---~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
++++++.|+||+++||+.|+|.|.+.+-+|.+.+.+.. ++ .... ..+| .+.-++..+ +...+.. .+
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~---g~-e~~~~v~l~ig---~l~~~~~g~--~~~~~v~--~~ 70 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN---GD-EYTAKVKLKIG---PLKGTFSGR--VRFVNVD--EP 70 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec---CC-eEEEEEEEeec---ceeEEEEEE--EEEcccc--CC
Confidence 46889999999999999999999999999999988663 22 3211 1232 233333333 2222322 34
Q ss_pred CceEEEEEEcc---ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHh----CHHHHHHHHHH
Q 004764 172 DRELYFSMVDG---DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRS----DLPVNLQALAC 238 (732)
Q Consensus 172 ~rrI~F~~veG---Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~----~L~~~L~ALk~ 238 (732)
++.++++---| -|..+...-.|++. +.+|+|+|.+.++-...+ ..+..+.++. .+.+.+++|+.
T Consensus 71 ~~~~~i~g~G~~~~g~~~~~~~v~l~~~--g~gt~v~w~~~~~~gg~l-aqlGsr~i~~~~~kli~~~~~~l~~ 141 (146)
T COG3427 71 PRSITINGSGGGAAGFADGTVDVQLEPS--GEGTRVNWFADANVGGKL-AQLGSRLIDSVARKLINRFFDCLSS 141 (146)
T ss_pred CcEEEEEeecccccceeeeeeEEEEEEc--CCCcEEEEEEEccccHHH-HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 67777765542 47777888889885 466999999999755443 3444444444 44444444444
No 102
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=97.93 E-value=0.0008 Score=65.85 Aligned_cols=135 Identities=16% Similarity=0.351 Sum_probs=92.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHh-ccCcccccCcCC-cEEEEEEeeCC---EEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMT-AYETLPEIVPNL-AISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLt-DyE~yPef~P~V-~ssrVLer~~g---~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.+++|++.+|+++. .-..+|..+|++ +++++++.+++ .++.+.-+..+- ......+ ++.......
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~-~~~~Kek--ve~~D~~~~ 80 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGP-FKYVKEK--VEAIDEENK 80 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSS-EEEEEEE--EEEEETTTT
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCC-cceeEEE--EEeecCCCc
Confidence 468889999999999999999 556688899885 66789887643 555555444442 2223333 344445568
Q ss_pred eEEEEEEecCCc----ceeEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 419 EISFEQVEGDFD----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 419 rIsf~~veGdfk----~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~-Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
.+.|..++|++- .|...-.+.|.++|+|.+++.+.+++.++.. .|...+.. +..+++++.++.
T Consensus 81 ~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieayL 148 (151)
T PF00407_consen 81 TITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAYL 148 (151)
T ss_dssp EEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred EEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHHH
Confidence 999999998743 5555556667788889999999999876332 45444433 566666666654
No 103
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.88 E-value=0.00023 Score=74.57 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=75.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccc---eeEEEEEEEEEEEEEeeCCC-e
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG---LLYMVLHARVVMDICEQHEQ-E 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~g---ll~~~~~~rvvLdv~e~~~r-r 419 (732)
..+.+++.+++|+++++++|.|++++++|.+++.++++++..+..-.+++..... +...-+........ ..+.. .
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~-~~~dg~~ 156 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRK-PLKDGNT 156 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEe-cCCCCCE
Confidence 5788899999999999999999999999999999999998754322233321111 00001111111000 01112 1
Q ss_pred --EEEEEEec--------CCc--c-eeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH
Q 004764 420 --ISFEQVEG--------DFD--S-FQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI 466 (732)
Q Consensus 420 --Isf~~veG--------dfk--~-f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~l 466 (732)
|..+.+.. -.+ . ++|. .|.|+++++|.|+|...++| +.+|-+.
T Consensus 157 ~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP---g~lp~~~ 212 (236)
T cd08914 157 YVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA---SILPYFA 212 (236)
T ss_pred EEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC---ccchheE
Confidence 23333322 111 3 6788 99999989999999999998 4576544
No 104
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.84 E-value=0.0009 Score=63.93 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=80.8
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCc-EEEE--EE-eeCCEEEEEEEecc-------ceeEEEEEEEEEEEEEe
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA-ISKI--LS-RENNKVRILQEGCK-------GLLYMVLHARVVMDICE 414 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~-ssrV--Le-r~~g~~rv~q~g~~-------gll~~~~~~rvvLdv~e 414 (732)
+..+..|+||++.||++++|.+.+..|++.-. .+.+ .+ +.++..++...... +.. ..+..+ ++++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~-~~~~g~-v~~v-- 77 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNT-DVFGGR-FLEL-- 77 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcE-eeeEEE-EEEE--
Confidence 45677899999999999999999999997432 1222 22 23454454333222 111 122222 1122
Q ss_pred eCCCeEEEEEEe--cCCc-ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 415 QHEQEISFEQVE--GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 415 ~~~rrIsf~~ve--Gdfk-~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.++++|+|...- +... ...-.|.|++.+ ++|+|++....- +...........-..+|..|++++|
T Consensus 78 ~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~T~lt~~~~~~-------~~~~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNERIVYTDVFDDPSLSGEMTMTWTLSPVS-GGTDVTIVQSGI-------PDGIPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred cCCCEEEEEEEecCCCCCceEEEEEEEEecC-CCEEEEEEEeCC-------CchhhhhHHHHHHHHHHHHHHHHhc
Confidence 467899998542 1122 336788999887 559999887532 1222345677788888999988876
No 105
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.84 E-value=0.00033 Score=65.61 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=79.8
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+|+.++.|+||++.||+++||.++|++|++... ... ....+....+...+... ......+.+.- .+++
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~-~~~~~~~g~~~~~~~~~-------~~~~~~i~~~~---p~~~ 69 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPF-VVGEGATGEITYPGYEH-------GVFPVTVVEVD---PPRR 69 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCc-ccCCcceeEEecCCCCc-------cceEEEEEEeC---CCcE
Confidence 588999999999999999999999999999853 111 11111111111111100 01112223332 4678
Q ss_pred EEEEEEccc---------cceeeEEEEEEecCCCCeeEEEEEEEEecCCC--ccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 175 LYFSMVDGD---------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN--FPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 175 I~F~~veGD---------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p--iP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
|.|+...+. -....-.|+|++. +++|+|+++-.--+... .... ........-...|..|++.+|
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~gT~vt~~~~~~~~~~~~~~~~-~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 70 FSFRWHPPAIDPGEDYSAEPSTLVEFTLEPI--AGGTLLTVTESGFDALPAERRAE-AYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EEEEecCCCcccccccCCCCceEEEEEEEec--CCcEEEEEEEcCCCCCChHHHHH-HHHhhhhhHHHHHHHHHHHhc
Confidence 888865332 1234578999985 47799999876322221 1111 234577888889999998876
No 106
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=97.82 E-value=0.0011 Score=66.46 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=98.8
Q ss_pred eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEee-CCEE-EEEE-Eecc--ceeEEEEEEEEEEEEEee-
Q 004764 342 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKV-RILQ-EGCK--GLLYMVLHARVVMDICEQ- 415 (732)
Q Consensus 342 ~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~-~g~~-rv~q-~g~~--gll~~~~~~rvvLdv~e~- 415 (732)
....+.+...|+++++.++..+.|-.. +|.+.+.++++++.- ++.. .... .... .+...-|. .++....
T Consensus 44 ~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv---~~~~~~~~ 118 (206)
T PF01852_consen 44 PIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFV---FLRSWRKD 118 (206)
T ss_dssp SCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEE---EEEEEEEC
T ss_pred cceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEE---EEEEEEEe
Confidence 346789999999999977777777666 999999999999884 4432 2211 1111 12111111 1122222
Q ss_pred CCC--eEEEEEEec---C------Cc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 004764 416 HEQ--EISFEQVEG---D------FD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI 482 (732)
Q Consensus 416 ~~r--rIsf~~veG---d------fk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~AL 482 (732)
.+. -|.++.++. + .+ .+.+.|.|++.+++.|.|+|....+|. +++|.++++.++.......++.+
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~--G~iP~~~~n~~~~~~~~~~~~~~ 196 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPK--GWIPSWLVNMVVKSQPPNFLKNL 196 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESS--SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCC--CCChHHHHHHHHHHhHHHHHHHH
Confidence 333 355555541 1 12 456899999999999999999999985 67999999999999999999999
Q ss_pred HHHHHhh
Q 004764 483 RDYVEKR 489 (732)
Q Consensus 483 K~rAE~~ 489 (732)
++++++.
T Consensus 197 ~~~~~~~ 203 (206)
T PF01852_consen 197 RKALKKQ 203 (206)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988763
No 107
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.78 E-value=0.0011 Score=68.18 Aligned_cols=152 Identities=11% Similarity=-0.046 Sum_probs=96.1
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeee----E
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRA----L 151 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~i----l 151 (732)
++.++++...+..++ .+-+++++.|+++++.|...+.+ ..++|..++.++++++.-+++.-..+.+...-. -
T Consensus 34 ~~~~~e~~ykK~~d~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~R 111 (205)
T cd08909 34 SSDNTELAYKKVGDGNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSR 111 (205)
T ss_pred CcCCeEEEEecCCCCCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCC
Confidence 456788888886665 46799999999999999888877 479999999999999986654322221211000 0
Q ss_pred EEEEEEEEEEEEEEeecCCCCceEEEEEEccc---------cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH
Q 004764 152 YWHIEARVVLDLQELIHSASDRELYFSMVDGD---------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE 222 (732)
Q Consensus 152 ~~~~~arvvLdv~E~~~~~~~rrI~F~~veGD---------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~ 222 (732)
-|+.......+ .+ ...-.|.++-++.. ...+.|.|.++|.+ .++|+|+|-..++|++++|.|+.+
T Consensus 112 D~v~~R~w~~~---~~--~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~-~g~trvt~i~~vDpkG~~P~W~~n 185 (205)
T cd08909 112 DFVVLRSWRTD---LP--KGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCG-SGKSRLTHICRVDLKGHSPEWYNK 185 (205)
T ss_pred EEEEEEEEEEe---CC--CCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECC-CCCEEEEEEEEecCCCCChHHHHH
Confidence 01000000000 00 00111222222211 13456899999986 468999999999999999999876
Q ss_pred HHHHhCHHHHHHHHHH
Q 004764 223 RIIRSDLPVNLQALAC 238 (732)
Q Consensus 223 ~~ir~~L~~~L~ALk~ 238 (732)
. .-..+...|..||.
T Consensus 186 ~-~g~~~~~~~~~~r~ 200 (205)
T cd08909 186 G-FGHLCAAEAARIRN 200 (205)
T ss_pred h-HHHHHHHHHHHHHh
Confidence 4 34555666666665
No 108
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=97.78 E-value=0.0015 Score=67.07 Aligned_cols=159 Identities=10% Similarity=0.016 Sum_probs=107.6
Q ss_pred cCCceEEEEEEe-cCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVV-SWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v-~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
...++.|+.+.. .....-.+++..|+++++.||+.|-|-+...+|-+++.+.++|+.-+++....+.+......++ +.
T Consensus 29 ~~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~-vs 107 (204)
T cd08904 29 TSKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGS-IS 107 (204)
T ss_pred cCCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCc-cc
Confidence 447889888864 4556679999999999999999999999999999999999999986666544443322211111 11
Q ss_pred EEEEEEEEE--eecCCCCceEEEEEEcc-------c-c--ceeeEEEEEEecCCC-CeeEEEEEEEEecCCCccHHHHHH
Q 004764 157 ARVVLDLQE--LIHSASDRELYFSMVDG-------D-F--KKFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLER 223 (732)
Q Consensus 157 arvvLdv~E--~~~~~~~rrI~F~~veG-------D-f--k~f~GsW~Lepl~~g-~gT~LtY~l~V~P~~piP~~Lv~~ 223 (732)
.|=.++++- ... ...--+....++- + + ...-|-|.+.|++.. +.|.|+|-+..+|++++|.++++.
T Consensus 108 pRDfV~vr~~~r~~-~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~ 186 (204)
T cd08904 108 PRDFVDLVHIKRYE-GNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEK 186 (204)
T ss_pred CceEEEEEEEEEeC-CCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHH
Confidence 121122211 110 0000111111110 1 1 223367999998633 479999999999999999999999
Q ss_pred HHHhCHHHHHHHHHH
Q 004764 224 IIRSDLPVNLQALAC 238 (732)
Q Consensus 224 ~ir~~L~~~L~ALk~ 238 (732)
++.+.+-.-...|++
T Consensus 187 ~~~~~~~~f~~~~~~ 201 (204)
T cd08904 187 TMPTNLVNLILDAKD 201 (204)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999988888876
No 109
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.78 E-value=0.00051 Score=65.02 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=81.3
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
+..++.|+||++.||+.++|-+.+..|++.-...++ +.|+..+.......+ ....+ .+++ .++++|.|+-.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~--~~Gg~~~~~~~~~~~----~~~g~-~~~~--~p~~~l~~~w~ 72 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRL--EEGKTVTWDWEMYGA----SVPVN-VLEI--EPNKRIVIEWG 72 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccc--cCCCEEEEEEEccCC----ceEEE-EEEE--cCCCEEEEEec
Confidence 578899999999999999999999998665333332 345544433322222 11222 1222 46789988764
Q ss_pred ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHH-HHHHHhhHHHHHHHHHHHHHh
Q 004764 426 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIM-EEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 426 eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv-~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.+. ....-.|+|++.++|+|+|++....-+. .-.+.+. .......-..+|..|++++|.
T Consensus 73 ~~~-~~s~v~~~l~~~~~ggT~ltl~~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 73 DPG-EPTTVEWTFEELDDGRTFVTITESGFPG---TDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred CCC-CCEEEEEEEEECCCCcEEEEEEECCCCC---CcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 421 1346789999987577999988542221 1111111 112357788999999999885
No 110
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.75 E-value=0.0021 Score=61.36 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=84.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+..+..++||+++||+.++|-+.+..|+..- ..+++--+.||..++.....+|.. ......+ +++ .++++|+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~~-~ei--~p~~~l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGVY-HEV--TPPERIV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEEE-EEE--cCCCEEE
Confidence 4556789999999999999999999999753 223333345666555443333322 1222321 122 4678898
Q ss_pred EEEEecC--CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 422 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 422 f~~veGd--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
|.-.-.. -....-.|+|++.+ |+|+|+.+..+.. .-.........+..+-...|..|+++++
T Consensus 78 ~t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~~~~---~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 78 QTEEFEGLPDGVALETVTFTELG-GRTRLTATSRYPS---KEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EEeEecCCCCCceEEEEEEEECC-CCEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8754321 22446688999976 5699998866531 1011224566677888888888888764
No 111
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.75 E-value=0.00091 Score=60.96 Aligned_cols=121 Identities=19% Similarity=0.223 Sum_probs=76.7
Q ss_pred cCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEecC---C
Q 004764 353 KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGD---F 429 (732)
Q Consensus 353 ~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~veGd---f 429 (732)
+||+++||++++|.+.+..|.+ +....+--+.|+..++ .. .++-. ..+..++ +++ .++++|.|+...++ .
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~~~~Gg~~~~-~~-~~g~~-~~~~~~v-~~~--~p~~~i~~~~~~~~~~~~ 73 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEMDFRPGGSFRF-MD-PDGGE-FGFDGTV-LEV--EPPERIVFTWRMPDDPDG 73 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEEECSTTEEEEE-EE-TTSEE-EEEEEEE-EEE--ETTTEEEEEEEEETSSSC
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcceeeeecCCEEEE-Ee-cCCCC-ceeeEEE-EEE--eCCEEEEEEEEccCCCCC
Confidence 6999999999999999999911 1222222234554455 22 44422 3333332 222 47789999955432 2
Q ss_pred cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 430 DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 430 k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
....-.|+|++ .+++|+|++...--+ ........+......+|..|++++|
T Consensus 74 ~~~~v~~~~~~-~~~~T~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 74 PESRVTFEFEE-EGGGTRLTLTHSGFP------DDDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEEEEEH------SHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEE-cCCcEEEEEEEEcCC------ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36678889999 567799999874322 1222222288888999999998876
No 112
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.74 E-value=0.0016 Score=61.88 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=79.9
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcC-----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~-----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
.-+..|+||+++||++++|-+.+..|+.. +..+++--+.++..+......+|.. ...... ++++ .++++|.
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g~-~~~~--~p~~~l~ 78 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPE-ITVEAR-YHDI--VPDERIV 78 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCE-EeeeEE-EEEe--cCCceEE
Confidence 44567999999999999999999999964 2334443345665555444334432 122222 1222 4678898
Q ss_pred EEEEe--cC--CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 422 FEQVE--GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 422 f~~ve--Gd--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
|.-.. ++ .....-.++|++.+ |+|+|++....-...+ .. .......+-..+|..|++++++
T Consensus 79 ~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~---~~--~~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 79 YTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFLDG---DD--DPAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEecccc---cc--hhhhHHHHHHHHHHHHHHHHhC
Confidence 77532 11 11345678999876 4599998755321101 11 1234556777888888887763
No 113
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.71 E-value=0.00092 Score=62.84 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=79.0
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccc-----eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNL-----ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v-----~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
++.++.++||++.||+++||-+++.+|++.. ...+ .+.+.||+.+..-.+...-..+.+.. .++ +..
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~-~d~~~GG~~~~~~~~~~g~~~~~~~g-~~~---ei~--- 73 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAE-NDLRVGGKFSYRMEAKDGSMGFDFEG-TYT---EVE--- 73 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceee-ecCCcCCEEEEEEEcCCCCcccccce-EEE---EEC---
Confidence 6778999999999999999999999996542 2222 24446666544322111100111111 122 222
Q ss_pred CCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 171 SDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 171 ~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++|.|+...| ..-.|.|++. +++|+|+....-. +.. ........-...|..|++.+|+
T Consensus 74 p~~~l~~~~~~~----~~v~~~l~~~--~~gT~l~l~~~~~-----~~~-~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 74 PHKLIEYTMEDG----REVEVEFTEE--GDGTKVVETFDAE-----NEN-PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred CCCEEEEEcCCC----CEEEEEEEEC--CCCEEEEEEECCC-----CCC-cHHHHHHHHHHHHHHHHHHhhC
Confidence 478999987543 2468999995 4789998763322 221 3345667778889999887763
No 114
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.68 E-value=0.0017 Score=62.23 Aligned_cols=134 Identities=19% Similarity=0.144 Sum_probs=80.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC--------cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNL--------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V--------~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
|+.++.|+||++.||++++| .+..|++.- ..+.+--+.||...+ ...+|..+ . ..+ ++++ .++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~--~~~~g~~~-~-~g~-v~~v--~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE--IGEDGTEC-E-WGT-VLAW--EPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE--ecCCCcEe-c-eEE-EEEE--cCC
Confidence 67889999999999999999 477887531 333443344554432 22233321 1 222 1222 467
Q ss_pred CeEEEEEE-ecCCc-----ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 418 QEISFEQV-EGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 418 rrIsf~~v-eGdfk-----~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
++|+|.-. ...+. ...-.|+|++.++++|+|++....-.....-..+..........-..+|..|++++|+
T Consensus 73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 89988754 21111 3467899999874569998875532210000022344555677888899999998874
No 115
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=97.60 E-value=0.0005 Score=69.98 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=103.7
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCe-eEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR-IWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggr-irv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
.+..-.|..+++.+|+|+.|.+.|.+|+|-+++|.|++.+.++. +--..+|+-.. --.+++.++.+ + +.-
T Consensus 70 Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l-~E~y~S~Vt~~----~----p~l 140 (227)
T KOG3177|consen 70 YSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPL-DERYTSNVTCV----K----PHL 140 (227)
T ss_pred HHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCccc-chhheeeeEEe----c----ccc
Confidence 34445688999999999999999999999999999998753332 21123654322 22233333332 1 223
Q ss_pred EEEEEEccc-cceeeEEEEEEecC-CCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 175 LYFSMVDGD-FKKFEGKWSIKSGT-RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 175 I~F~~veGD-fk~f~GsW~Lepl~-~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
+--...+|. |....-.|++.|.. -.+.+.|.|.+.++.+-.+-..+..-+.+.-...+..|.-+||...+
T Consensus 141 ~kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~ 212 (227)
T KOG3177|consen 141 TKTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRARKLY 212 (227)
T ss_pred eEEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344555 78888999999975 13678999999999999999999999999999999999999999864
No 116
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.59 E-value=0.0024 Score=60.48 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=78.8
Q ss_pred EEEEEEEecCHHHHHHHHhCcccccccccc----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPN----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+..+..|+||++.||+++||-+++.+|+++ +.... ++...||+.++.-.+.... .+... -.+.+.. +
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~-~d~~~GG~~~~~~~~~~g~-~~~~~----g~v~e~~---p 72 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHE-FDLRPGGRWRFVMHGPDGT-DYPNR----IVFLEIE---P 72 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEE-EEecCCCEEEEEEECCCCC-Eecce----EEEEEEc---C
Confidence 567889999999999999999999999852 22222 2334566543322221111 11111 1223332 4
Q ss_pred CceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHH---HHHHHHhCHHHHHHHHHHHHHh
Q 004764 172 DRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF---LERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 172 ~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~L---v~~~ir~~L~~~L~ALk~raEr 242 (732)
+++|.|+...++. ...=.|.|++. +++|+|+++-.. .-+... +...+.......|..|++.++|
T Consensus 73 ~~~l~~t~~~~~~-~~~v~~~~~~~--~~gT~ltl~~~~----~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 73 PERIVYDHGSGPP-RFRLTVTFEEQ--GGKTRLTWRQVF----PTAAERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred CCEEEEEeccCCC-cEEEEEEEEEC--CCCEEEEEEEEc----CCHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 6889998754421 23457888885 478999888643 222221 2344566677888888887764
No 117
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.47 E-value=0.0039 Score=59.73 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=80.1
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccce-------EEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLA-------CSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~-------~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
|+.++.|+||++.||+++|| .+.+|++.-. ....++.+.||+... ..+.... ++ . ..++ +..
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~-~~~~g~~-~~--~-g~v~---~v~- 70 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE-IGEDGTE-CE--W-GTVL---AWE- 70 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE-ecCCCcE-ec--e-EEEE---EEc-
Confidence 78899999999999999999 5888876421 222334455666532 2111111 11 1 1222 222
Q ss_pred CCCCceEEEEEE-ccccc-----eeeEEEEEEecCCCCeeEEEEEEEEecCCCc--cHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 169 SASDRELYFSMV-DGDFK-----KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF--PAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 169 ~~~~rrI~F~~v-eGDfk-----~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi--P~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
++++|.|+-. ..++. ...=+|.|++.+ .++|+|+..-.--+...- +...........-...|..|++.+
T Consensus 71 --p~~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~-~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 71 --PPSRLVFTWQINADWRPDPDKASEVEVRFEAVG-AEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred --CCCEEEEEeccCCCcCcCCCCceEEEEEEEECC-CCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 4688888765 22221 345689999852 168998877665332211 223445566778888999999887
Q ss_pred Hh
Q 004764 241 ER 242 (732)
Q Consensus 241 Er 242 (732)
|+
T Consensus 148 ~~ 149 (149)
T cd08891 148 EK 149 (149)
T ss_pred cC
Confidence 64
No 118
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.45 E-value=0.0035 Score=64.49 Aligned_cols=135 Identities=16% Similarity=0.073 Sum_probs=86.8
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC-EEEEEEEeccceeEEEEEEEEEEEEEe--eCCC--
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN-KVRILQEGCKGLLYMVLHARVVMDICE--QHEQ-- 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g-~~rv~q~g~~gll~~~~~~rvvLdv~e--~~~r-- 418 (732)
+.+.+++.|++|+++|...+.+ ..++|..++.+.++++.-++ .-...... .+..+..-..-++++... .+..
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~-~~~~P~~~RD~v~~R~w~~~~~~G~~ 128 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVL-NCMAPHPSRDFVVLRSWRTDLPKGAC 128 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEe-ecCCCCCCCEEEEEEEEEEeCCCCcE
Confidence 6688999999999999888877 69999999999999988654 22222221 111100000111111110 1122
Q ss_pred eEEEEEEecC-------Cc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 419 EISFEQVEGD-------FD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 419 rIsf~~veGd-------fk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
.|....++.+ ++ .+.|.|.++|.++|+|+|+|-..++|+ +.+|. .+.+.+..-+.+.|..||+
T Consensus 129 vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpk--G~~P~-W~~n~~g~~~~~~~~~~r~ 200 (205)
T cd08909 129 SLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLK--GHSPE-WYNKGFGHLCAAEAARIRN 200 (205)
T ss_pred EEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCC--CCChH-HHHHhHHHHHHHHHHHHHh
Confidence 2344443321 11 457889999999899999999999996 56886 4556677777777777775
No 119
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.36 E-value=0.0068 Score=55.18 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=76.1
Q ss_pred ecCHHHHHHHHhCcccccccc-ccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEEEEEEc
Q 004764 103 NADVDSVWNALTDYERLADFV-PNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVD 181 (732)
Q Consensus 103 ~AP~e~Vw~VLTDYErlpeFi-P~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~F~~ve 181 (732)
+||++.||+++||-+++.+|. ...... ....||+.+. +........+ ... +.+.. .+++|.|+..-
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~---~~~~Gg~~~~-~~~~g~~~~~--~~~----v~~~~---p~~~i~~~~~~ 67 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAEM---DFRPGGSFRF-MDPDGGEFGF--DGT----VLEVE---PPERIVFTWRM 67 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEEE---ECSTTEEEEE-EETTSEEEEE--EEE----EEEEE---TTTEEEEEEEE
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCccee---eeecCCEEEE-EecCCCCcee--eEE----EEEEe---CCEEEEEEEEc
Confidence 599999999999999999992 222222 3345666655 2222222222 211 33443 36889988664
Q ss_pred cc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 182 GD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 182 GD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++ .....-.|.|++. +++|+|++.....+ +.......+...-..+|..|++.+|
T Consensus 68 ~~~~~~~~~~v~~~~~~~--~~~T~l~~~~~~~~----~~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 68 PDDPDGPESRVTFEFEEE--GGGTRLTLTHSGFP----DDDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp ETSSSCEEEEEEEEEEEE--TTEEEEEEEEEEEH----SHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEEEEEEc--CCcEEEEEEEEcCC----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 43 4577788999993 58899998884422 1222222277888888888888775
No 120
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.35 E-value=0.0051 Score=58.20 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=78.8
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
++.++.|+||++.||+++||-+++.+|.+.-...+ ...||+++..-..... ...-.+.+.. ++++|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~---~~~Gg~~~~~~~~~~~--------~~~g~~~~~~---p~~~l 67 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGR---LEEGKTVTWDWEMYGA--------SVPVNVLEIE---PNKRI 67 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCcc---ccCCCEEEEEEEccCC--------ceEEEEEEEc---CCCEE
Confidence 67899999999999999999999999865533222 2234543211111110 1112223332 46889
Q ss_pred EEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH-HHHHHhCHHHHHHHHHHHHHhh
Q 004764 176 YFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL-ERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 176 ~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv-~~~ir~~L~~~L~ALk~raEr~ 243 (732)
.|+...++ -...=.|.|++.+ +++|+|++.-.--|. ..+..+. .......-...|..|+..+|..
T Consensus 68 ~~~w~~~~-~~s~v~~~l~~~~-~ggT~ltl~~~~~~~-~~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 68 VIEWGDPG-EPTTVEWTFEELD-DGRTFVTITESGFPG-TDDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred EEEecCCC-CCEEEEEEEEECC-CCcEEEEEEECCCCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 88765432 1233589999853 378999988543221 1111121 1224578888999999988863
No 121
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.32 E-value=0.0092 Score=56.99 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=76.8
Q ss_pred EEEEEEEecCHHHHHHHHhCcccccccccc----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPN----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+..+..|+||++.||+++||-+.+.+|++. +..+.. +...||+.++.-.+.... .+... -.+.+.. +
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~-d~~~GG~~~~~~~~~~g~-~~~~~----g~v~~i~---p 72 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL-DLRPGGAFRTVMRGPDGE-EFPNP----GCFLEVV---P 72 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEE-EeecCcEEEEEEECCCCC-Eecce----EEEEEEe---C
Confidence 567789999999999999999999999874 222322 334566654432221111 11111 1122322 3
Q ss_pred CceEEEEEEcc---cc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHH---HHHHHHhCHHHHHHHHHHHHH
Q 004764 172 DRELYFSMVDG---DF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF---LERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 172 ~rrI~F~~veG---Df---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~L---v~~~ir~~L~~~L~ALk~raE 241 (732)
+++|.|+..-+ +. ....-.|.|++. +++|+|+.+... +-+... ....+...-...|..|++.++
T Consensus 73 ~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~--~~gT~Ltl~~~~----~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 73 GERLVFTDALTPGWRPAEKPFMTAIITFEDE--GGGTRYTARARH----WTEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred CCEEEEEEeecCCcCCCCCCcEEEEEEEEec--CCcEEEEEEEEe----CCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 68888875321 11 113457999985 478999876332 122211 122235667888888888765
No 122
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.29 E-value=0.019 Score=54.75 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=80.0
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccce---EEEEEecCCCCeeEEEEEeee------eeEEEEEEEEEEEEEEEe
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLA---CSGRIPCPYPGRIWLEQRGLQ------RALYWHIEARVVLDLQEL 166 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~---~SeVLe~~~ggrirv~Qvg~~------~il~~~~~arvvLdv~E~ 166 (732)
|+.+..|+||++.||+++||-+++.+|++.-. .+..++...||...+...... .-..+.+ ...+.+.
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~----~g~v~~v 77 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVF----GGRFLEL 77 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeee----EEEEEEE
Confidence 56778899999999999999999999987432 122234345665443322110 0000111 1123333
Q ss_pred ecCCCCceEEEEEE--ccccc-eeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 167 IHSASDRELYFSMV--DGDFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 167 ~~~~~~rrI~F~~v--eGDfk-~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
. .+++|.|+.. ++... ...=.|.|++. +++|+|++.....| ...........-...|..|++.+|
T Consensus 78 ~---p~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~T~lt~~~~~~~-----~~~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 V---PNERIVYTDVFDDPSLSGEMTMTWTLSPV--SGGTDVTIVQSGIP-----DGIPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred c---CCCEEEEEEEecCCCCCceEEEEEEEEec--CCCEEEEEEEeCCC-----chhhhhHHHHHHHHHHHHHHHHhc
Confidence 2 3688888754 22222 23567888885 47899998887433 223345667777778888887665
No 123
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=97.28 E-value=0.01 Score=60.99 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=103.4
Q ss_pred cccccccccccCCCccccceeeeeeccCccccCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC-
Q 004764 308 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN- 386 (732)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~Ev~~rr~D~l~e~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~- 386 (732)
++|.+.-+.- -..|+.+...+ ..+ .-+..+.+|++++++||+++.|.+...+|.+.|.+.+++++-+
T Consensus 22 ~gWk~~k~~~-------~~~v~~k~~~~---~~g--kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~ 89 (204)
T cd08904 22 SGWKVVKTSK-------KITVSWKPSRK---YHG--NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDS 89 (204)
T ss_pred cCCeEEecCC-------ceEEEEEEcCC---CCc--eEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCC
Confidence 5677664431 12456654322 233 5588889999999999999999999999999999999999854
Q ss_pred CEEEEEEEecc---ceeE-EEEEEEEEEEEEe-eCCCe--EEEEEEe--------cCCc--ceeEEEEEEEcCCC--eEE
Q 004764 387 NKVRILQEGCK---GLLY-MVLHARVVMDICE-QHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLGSH--HTL 447 (732)
Q Consensus 387 g~~rv~q~g~~---gll~-~~~~~rvvLdv~e-~~~rr--Isf~~ve--------Gdfk--~f~G~W~Lep~gdG--~Tr 447 (732)
+.......... +++. .-|.. ++... ..+.. +....++ |-++ ..-|-|.+.|++++ .|.
T Consensus 90 ~T~I~~~~~~~~~~~~vspRDfV~---vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~ 166 (204)
T cd08904 90 DTFICHTITQSFAMGSISPRDFVD---LVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSK 166 (204)
T ss_pred CcEEEEEecccccCCcccCceEEE---EEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceE
Confidence 33333322211 1110 01111 11111 11222 2223333 1122 23477899998653 699
Q ss_pred EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 448 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 448 Vty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
+++-+..+++ +++|..+++.++...+......|++.+
T Consensus 167 l~~~~~~Dlk--G~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 167 LVMFVQPELR--GNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEEEEEeCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9998888886 689999999999998888888887643
No 124
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=97.16 E-value=0.034 Score=54.47 Aligned_cols=135 Identities=15% Similarity=0.263 Sum_probs=84.3
Q ss_pred eeEEEEEEEecCHHHHHHHHhC-ccccccccccceEE-EEEecCC--CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNALTD-YERLADFVPNLACS-GRIPCPY--PGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTD-YErlpeFiP~v~~S-eVLe~~~--ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..+..++.+++|++++|+++.+ -..+|..+|.+.++ ++++-++ +|.++.+.-+....... +. ..+ +..+
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~---~K--ekv-e~~D- 76 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKY---VK--EKV-EAID- 76 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEE---EE--EEE-EEEE-
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcce---eE--EEE-Eeec-
Confidence 4688999999999999999994 55578888777555 4555321 22555554433221111 11 111 2222
Q ss_pred CCCceEEEEEEccc----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC---ccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 170 ASDRELYFSMVDGD----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN---FPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 170 ~~~rrI~F~~veGD----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p---iP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
...+.+.|++++|| ++.|...-.+.|.+ +++|.+.++++.++... .|...+.. +..+++++-+.+.
T Consensus 77 ~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~-~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieayLl 149 (151)
T PF00407_consen 77 EENKTITYTVIEGDVLGDYKSFKSTIQKIPKG-DGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAYLL 149 (151)
T ss_dssp TTTTEEEEEEEEETTGTTTEEEEEEEEEEEET-TSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeccccccEEEEEEEEEecCCC-CCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHHHh
Confidence 46799999999998 46788777777654 45699999999888554 34444433 5556666655543
No 125
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.021 Score=55.59 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=79.9
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..+.+|+||++.||+.++|-+.++.|+. -.-++.--+.++..++......+-. ..+...+ +++ .++++|+|.
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~~-~~~~~~~-~~v--~p~~rIv~t 82 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGPV-HSFEGEY-LEV--VPPERIVFT 82 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCCe-eecceEE-EEE--cCCcEEEEE
Confidence 5688899999999999999999999999998 3212222234444444444434422 2333332 233 367888877
Q ss_pred EEec----CCcceeEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHH
Q 004764 424 QVEG----DFDSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 424 ~veG----dfk~f~G~W~Lep~gdG-~TrVty~v~~ep~~d~~Lp~~l--v~r~lr~~l~~~L~ALK~rAE 487 (732)
-... ++..-..+|+|.+..+| +|++....... .+++.- ....+...-..++..+++.++
T Consensus 83 w~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 83 WDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGGG-----FLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred eccCCCCCcccCceEEEEEEEecCCCcEEEEEEeecc-----ccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 5442 22245788999987665 34433332221 122222 222346777888888887765
No 126
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=96.86 E-value=0.049 Score=56.01 Aligned_cols=157 Identities=15% Similarity=0.022 Sum_probs=104.7
Q ss_pred CCceEEEEEEe-cCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeE-EEEEeeeeeEEEEEE
Q 004764 79 QRKVHCEVEVV-SWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIW-LEQRGLQRALYWHIE 156 (732)
Q Consensus 79 e~~v~v~v~~v-~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrir-v~Qvg~~~il~~~~~ 156 (732)
..++.|+.+.. .-+..-.+++..|+..++.||+.|.+-.+..+|-++++++++|+.-+.+... .+...... ..+ +.
T Consensus 31 ~~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~-~~i-IS 108 (202)
T cd08902 31 SKDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQL-LNI-IS 108 (202)
T ss_pred CCCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCC-cCc-cC
Confidence 37888888844 4444457777788899999999999999899999999999999876555432 23332221 110 11
Q ss_pred EEEEEEEEEeecCCCCceEEE-----------EEEccccceeeEEEEEEecCCC-CeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 ARVVLDLQELIHSASDRELYF-----------SMVDGDFKKFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 arvvLdv~E~~~~~~~rrI~F-----------~~veGDfk~f~GsW~Lepl~~g-~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
.|=..++.-.... .+..++- ..|.|. ..=+-|.+.|++.+ ..|.+++-+..++++++|..+++.+
T Consensus 109 pRDFVdv~~~~~~-~d~~~s~gvs~~~~~~ppg~VRge--n~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~ 185 (202)
T cd08902 109 PREFVDFSYTTQY-EDGLLSCGVSIEYEEARPNFVRGF--NHPCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTA 185 (202)
T ss_pred ccceEEEEEEEEe-CCCeEEEEeeecCCCCCCCeEeec--ccccEEEEEECCCCCCceEEEEEEEecCCCCccHHHHHHH
Confidence 1111121111000 1111111 112221 12256999998743 5689999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHH
Q 004764 225 IRSDLPVNLQALACRA 240 (732)
Q Consensus 225 ir~~L~~~L~ALk~ra 240 (732)
+-+.+-.-...||+++
T Consensus 186 ~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 186 MASTLVNFYSDLKKAL 201 (202)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999999864
No 127
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.86 E-value=0.055 Score=51.38 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=74.7
Q ss_pred EEEEEEEecCHHHHHHHHhCcccccccccc-----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPN-----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~-----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
++-+-.++||++.||+++||-+.+.+|+.. +..+. .+...||..+..-....... +... -.+.+..
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~-~d~~~Gg~~~~~~~~~~g~~-~~~~----g~~~~~~--- 72 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDE-FDFRVGGREVSRGGPKGGPE-ITVE----ARYHDIV--- 72 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeE-EecCCCCEEEEEEECCCCCE-Eeee----EEEEEec---
Confidence 345567999999999999999999999965 23332 23345665543322211111 1111 1222332
Q ss_pred CCceEEEEEE--cccc--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 171 SDRELYFSMV--DGDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 171 ~~rrI~F~~v--eGDf--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++|.|+-. .++- ....=.|.|++. +++|+|+..-.... +.-+.. .......-...|..|++.+++
T Consensus 73 p~~~l~~t~~~~~~~~~~~~s~v~~~l~~~--~~gT~l~~~~~~~~-~~~~~~--~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 73 PDERIVYTYTMHIGGTLLSASLATVEFAPE--GGGTRLTLTEQGAF-LDGDDD--PAGREQGTAALLDNLAAELER 143 (143)
T ss_pred CCceEEEEEeeccCCccccceEEEEEEEEC--CCCEEEEEEEEEec-ccccch--hhhHHHHHHHHHHHHHHHHhC
Confidence 4688877653 2221 122346788875 47799888765421 111111 234456667778888877664
No 128
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.81 E-value=0.07 Score=50.90 Aligned_cols=133 Identities=11% Similarity=-0.025 Sum_probs=77.1
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCCeeEEEEEeee-eeEEEEEEEEEEEEEEEeecCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPGRIWLEQRGLQ-RALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~ggrirv~Qvg~~-~il~~~~~arvvLdv~E~~~~~ 170 (732)
++.+..++||++.||+++||-+.+.+|+..- ..++ ++.+.||+.+..-.+.. .... .. -.+.+..
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~-~d~r~GG~~~~~~~~~~g~~~~--~~----g~~~ei~--- 71 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCE-CDIRVGGSYRYVHRAPDGEEMG--FH----GVYHEVT--- 71 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEE-EeccCCCEEEEEEECCCCCEec--ce----EEEEEEc---
Confidence 5667889999999999999999999999864 1222 24445666544322111 1111 11 1222332
Q ss_pred CCceEEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 171 SDRELYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 171 ~~rrI~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++++|.|+-.-.+ -....=.|.|++. +++|+|+.+..+ +..-.-.......+...-...|..|.+.++
T Consensus 72 p~~~l~~t~~~~~~~~~~s~v~~~l~~~--~~gT~l~l~~~~-~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 72 PPERIVQTEEFEGLPDGVALETVTFTEL--GGRTRLTATSRY-PSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred CCCEEEEEeEecCCCCCceEEEEEEEEC--CCCEEEEEEEEe-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3678887654222 2234457899985 478999986443 211011113444556667777777776543
No 129
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=96.80 E-value=0.032 Score=57.29 Aligned_cols=141 Identities=10% Similarity=0.137 Sum_probs=90.1
Q ss_pred cCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE-EE-EEEec--cceeE-EEEEEEEEEEEE
Q 004764 339 NGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RI-LQEGC--KGLLY-MVLHARVVMDIC 413 (732)
Q Consensus 339 ~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv-~q~g~--~gll~-~~~~~rvvLdv~ 413 (732)
.+|.. ++.+.+|+..+++||+.|.+.....+|.+++++++|+++-+... .. +.+.. .+++. .-|.. +...
T Consensus 44 f~gkl--~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVd---v~~~ 118 (202)
T cd08902 44 FGGYL--YKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVD---FSYT 118 (202)
T ss_pred CCCce--EEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEE---EEEE
Confidence 35544 55666678999999999999999999999999999998854433 32 22211 11111 01111 1111
Q ss_pred e-eCCCeEEEE-EEe------cCCc--ceeEEEEEEEcCCC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHH
Q 004764 414 E-QHEQEISFE-QVE------GDFD--SFQGKWLFEQLGSH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCA 481 (732)
Q Consensus 414 e-~~~rrIsf~-~ve------Gdfk--~f~G~W~Lep~gdG--~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~A 481 (732)
. ..+..++.. .++ |-.+ -+=+-|-+.|.+++ .|.+++-+..+++ ++||..+++.++-..+-.....
T Consensus 119 ~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLk--G~LPqsiIdq~~~~~~~~F~~~ 196 (202)
T cd08902 119 TQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLR--GMLPQSAVDTAMASTLVNFYSD 196 (202)
T ss_pred EEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCC--CCccHHHHHHHhhHHHHHHHHH
Confidence 1 122222221 111 1112 22367999998765 4666777778876 6799999999999999999999
Q ss_pred HHHHH
Q 004764 482 IRDYV 486 (732)
Q Consensus 482 LK~rA 486 (732)
||+++
T Consensus 197 Lrk~~ 201 (202)
T cd08902 197 LKKAL 201 (202)
T ss_pred HHHhc
Confidence 98875
No 130
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=96.75 E-value=0.025 Score=52.90 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=72.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
+..++.|+||++.||+.++|-+.+..|+..... +--+.|+...+. .+. +... ++++ .++++|+|.-.
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~--~d~~~GG~~~~~----~g~----~~g~-~~~i--~p~~~l~~~w~ 68 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPAK--VDAKVGGKFSLF----GGN----ITGE-FVEL--VPGKKIVQKWR 68 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCce--ecCCCCCEEEEe----CCc----eEEE-EEEE--cCCCEEEEEEE
Confidence 456789999999999999999999999864332 222344544332 121 1121 1222 46788877643
Q ss_pred ec--C-CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 004764 426 EG--D-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE 487 (732)
Q Consensus 426 eG--d-fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~-~L~ALK~rAE 487 (732)
-. + -....-.|+|++.+ ++|+|++....-+. . - .......-.. .++.|++..+
T Consensus 69 ~~~~~~~~~s~v~~~l~~~~-~gT~ltl~~~g~~~------~-~-~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 69 FKSWPEGHYSTVTLTFTEKD-DETELKLTQTGVPA------G-E-EERTREGWERYYFESIKQTFG 125 (126)
T ss_pred cCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCC------c-h-HHHHHhhHHHHHHHHHHHHhC
Confidence 21 1 12456799999975 56999887664321 1 1 1334455543 6677776653
No 131
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.53 E-value=0.013 Score=55.68 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=68.9
Q ss_pred EcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEecCC--
Q 004764 352 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDF-- 429 (732)
Q Consensus 352 I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~veGdf-- 429 (732)
++||+++||+.+||-+.+..|.-. ..+++--+.|+..++.. +. ...+ .+++ .++++|.|.-.-.+.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d~~~GG~f~~~~----~~----~~G~-~~ev--~pp~rlv~tw~~~~~~~ 68 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMDAKVGGKFSLFN----GS----VEGE-FTEL--EKPKKIVQKWRFRDWEE 68 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCccccCCcCCEEEEec----Cc----eEEE-EEEE--cCCCEEEEEEecCCCCC
Confidence 479999999999999999998421 12233233455444321 11 1222 1122 467888877532211
Q ss_pred -cceeEEEEEEEcCCCeEEEEEEEE-EEeccCccchHHHHHHHHHhhHHH-HHHHHHHHH
Q 004764 430 -DSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYV 486 (732)
Q Consensus 430 -k~f~G~W~Lep~gdG~TrVty~v~-~ep~~d~~Lp~~lv~r~lr~~l~~-~L~ALK~rA 486 (732)
....-+|+|++.++|+|+|+.... +... .. .-..........+... .|+.|++.+
T Consensus 69 ~~~s~vt~~~~~~~~g~T~lt~~~~g~~~~-~~-~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 69 DVYSKVTIEFRAVEEDHTELKLTQTGIPSL-DK-FGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCceEEEEEEEeCCCCcEEEEEEEecCccc-cc-cCCCchhhHHHhChHHHHHHHHHHHh
Confidence 124678999997667799998876 4221 00 0001233445556666 477777664
No 132
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.19 E-value=0.18 Score=49.62 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=88.6
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCC-eeEEEEEeee-ee----EEEEEEEEEEEEEEE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPG-RIWLEQRGLQ-RA----LYWHIEARVVLDLQE 165 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~gg-rirv~Qvg~~-~i----l~~~~~arvvLdv~E 165 (732)
+++++.+++|+++||++++|=+-|..-+..+ ..+.-+...+++ ++.+.|.-.. .+ -.+. .....+.-++
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v-~~~l~v~~~e 79 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFV-GGDLRVTRTE 79 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhc-CCCeEEEEEE
Confidence 4678999999999999999975444333322 223333333333 3444442211 11 0000 0011122122
Q ss_pred -eec-CCCCceEEEEEE-ccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 166 -LIH-SASDRELYFSMV-DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 166 -~~~-~~~~rrI~F~~v-eGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+.+ .......+|+.. .|.--.+.|.-.|++ .+++|+++++.+++-++|+-+.-+++++..++...|..-.+.+.+
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~--~~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~~~ 157 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAPVSISGTMRLRP--DGGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFTAE 157 (159)
T ss_pred EEecCCCCeEEEEEEEEecCceEEEEEEEEEec--CCCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 123333444433 466678899999999 468999999999999999999999999999999888887775543
No 133
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.14 E-value=0.12 Score=53.31 Aligned_cols=146 Identities=10% Similarity=0.012 Sum_probs=96.4
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEec-CHHHHHHHHhCccccccccccceEEEEEecCCCC-eeEEEEEeee---ee
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNA-DVDSVWNALTDYERLADFVPNLACSGRIPCPYPG-RIWLEQRGLQ---RA 150 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~A-P~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~gg-rirv~Qvg~~---~i 150 (732)
...+++|..++++++ .+-.++++.|++ |++.++++|.| -..|=+++.++++++.-+++ .+--+....- ..
T Consensus 34 ~~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~ 110 (205)
T cd08907 34 GPDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHPR 110 (205)
T ss_pred CCCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCCC
Confidence 467899999998875 467899999998 55788899999 47888999999988875443 3321211100 00
Q ss_pred E-EEEEEEE---------EE----EEEEEeecCCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc
Q 004764 151 L-YWHIEAR---------VV----LDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF 216 (732)
Q Consensus 151 l-~~~~~ar---------vv----Ldv~E~~~~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi 216 (732)
- +...++. +. .+-...+ +.++ |+- ..+.-.+-|+|.+ .++|+|+|-..++|++.+
T Consensus 111 RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g-VRa-------~~l~sgYlIep~g-~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 111 RDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG-VRA-------VLLTSQYLIEPCG-MGRSRLTHICRADLRGRS 179 (205)
T ss_pred ceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC-eEE-------EEEeccEEEEECC-CCCeEEEEEEEeCCCCCC
Confidence 0 0000000 00 0000011 1111 222 2234568899975 568999999999999999
Q ss_pred cHHHHHHHHHhCHHHHHHHHHH
Q 004764 217 PAIFLERIIRSDLPVNLQALAC 238 (732)
Q Consensus 217 P~~Lv~~~ir~~L~~~L~ALk~ 238 (732)
|.|. +++....+...|..||.
T Consensus 180 P~Wy-nk~~g~~~a~~l~~ir~ 200 (205)
T cd08907 180 PDWY-NKVFGHLCAMEVARIRD 200 (205)
T ss_pred cHHH-HHhHHHHHHHHHHHHHh
Confidence 9999 99999999999999987
No 134
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=96.12 E-value=0.2 Score=46.81 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=73.4
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
++.+..|+||++.||+.+||-+.+..|+...... +...||+..+. .|. + . -.+.+.. ++++|
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~---d~~~GG~~~~~-~g~--~-----~----g~~~~i~---p~~~l 63 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPAKV---DAKVGGKFSLF-GGN--I-----T----GEFVELV---PGKKI 63 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCcee---cCCCCCEEEEe-CCc--e-----E----EEEEEEc---CCCEE
Confidence 5678899999999999999999999998764433 43456665433 111 0 1 1122222 36788
Q ss_pred EEEEEcccc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHH-HHHHHHHHH
Q 004764 176 YFSMVDGDF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPV-NLQALACRA 240 (732)
Q Consensus 176 ~F~~veGDf---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~-~L~ALk~ra 240 (732)
.|+-.-.+. ....=.|.|++. +++|+|+..-...|.. . . ..+...-.. .|..|++..
T Consensus 64 ~~~w~~~~~~~~~~s~v~~~l~~~--~~gT~ltl~~~g~~~~---~--~-~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 64 VQKWRFKSWPEGHYSTVTLTFTEK--DDETELKLTQTGVPAG---E--E-ERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEEEEcCCCCCCCcEEEEEEEEEC--CCCEEEEEEEECCCCc---h--H-HHHHhhHHHHHHHHHHHHh
Confidence 766542221 234568999995 4789999888765542 1 1 223444443 667776644
No 135
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=95.83 E-value=0.21 Score=51.50 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=98.0
Q ss_pred ccCcccccccccccCCCccccceeeeeeccCccccCceeEEEEEEEEEcC-CHHHHHHHHhccCcccccCcCCcEEEEEE
Q 004764 305 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKA-PVSEVWNVMTAYETLPEIVPNLAISKILS 383 (732)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~Ev~~rr~D~l~e~~g~~~~V~asI~I~A-PpE~VW~vLtDyE~yPef~P~V~ssrVLe 383 (732)
+-.++|-...+-. .+ ||..++..+ +-..+-...++.|++ |++.++++|.| -..|=+++.+.++++
T Consensus 24 ek~kgW~~~~~~~------~v-ev~~kk~~d----~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie 89 (205)
T cd08907 24 ERFKGWHSAPGPD------NT-ELACKKVGD----GHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIE 89 (205)
T ss_pred hccCCceeecCCC------Cc-EEEEEeCCC----CCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhhe
Confidence 4457787765533 33 788887543 333367888888888 56667899999 566889999988887
Q ss_pred eeCC--EEEEEEEeccceeEEEEEEEEEEEEEe--eCC--CeEEEEEEe---cC----Cc--ceeEEEEEEEcCCCeEEE
Q 004764 384 RENN--KVRILQEGCKGLLYMVLHARVVMDICE--QHE--QEISFEQVE---GD----FD--SFQGKWLFEQLGSHHTLL 448 (732)
Q Consensus 384 r~~g--~~rv~q~g~~gll~~~~~~rvvLdv~e--~~~--rrIsf~~ve---Gd----fk--~f~G~W~Lep~gdG~TrV 448 (732)
.-+. .+-.+.. .+.....-..-++++... .+. --|.-..++ .+ ++ .+.-.+.++|.+.|+|+|
T Consensus 90 ~Ld~n~dI~yY~~--~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~l 167 (205)
T cd08907 90 ALENNTEVYHYVT--DSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRL 167 (205)
T ss_pred eecCCCEEEEEEe--cCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEE
Confidence 7432 2222222 111111111222222211 011 111112222 11 21 233345789999899999
Q ss_pred EEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 449 KYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 449 ty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
+|-..++++ +.+|.++ ++....-+...|..||+-
T Consensus 168 tyi~rvD~r--G~~P~Wy-nk~~g~~~a~~l~~ir~s 201 (205)
T cd08907 168 THICRADLR--GRSPDWY-NKVFGHLCAMEVARIRDS 201 (205)
T ss_pred EEEEEeCCC--CCCcHHH-HHhHHHHHHHHHHHHHhh
Confidence 999999986 5689888 999999999998888863
No 136
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.37 Score=46.63 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=69.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE----EEEE-Eeccce-eEEEEEEEEEEEEEeeCCCe
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV----RILQ-EGCKGL-LYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~----rv~q-~g~~gl-l~~~~~~rvvLdv~e~~~rr 419 (732)
+.-..+|+||.|.||++-+..+++-..-|..+ |+-+.+..+ ++.. ...-|+ ...+|.++.+..- +++..+
T Consensus 4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~-~d~~~~ 79 (153)
T COG4276 4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESG-FDNGSR 79 (153)
T ss_pred eEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEEEeeecc-cCCcce
Confidence 44556899999999999999999987777765 332333221 1110 111121 1257888865433 345566
Q ss_pred EEEEEEecCCcce--eEEEEEEEcCCCeEEEEEEEEEEecc
Q 004764 420 ISFEQVEGDFDSF--QGKWLFEQLGSHHTLLKYSVESKMQK 458 (732)
Q Consensus 420 Isf~~veGdfk~f--~G~W~Lep~gdG~TrVty~v~~ep~~ 458 (732)
..=.++.|||... +-..+|.+.+ |+|.+.=++.++++.
T Consensus 80 FtDv~i~gPfp~~~WrHtH~F~~eg-g~TvliD~Vsye~p~ 119 (153)
T COG4276 80 FTDVCITGPFPALNWRHTHNFVDEG-GGTVLIDSVSYELPA 119 (153)
T ss_pred eeeeeecCCccceeeEEEeeeecCC-CcEEEEeeEEeeccC
Confidence 7667888999985 2333677765 569998888888753
No 137
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.35 Score=47.04 Aligned_cols=135 Identities=19% Similarity=0.097 Sum_probs=73.0
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeE-EEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIW-LEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrir-v~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
...++.+..|+||++.||+.+||=+.+++|+. -.-. ..+.+-+|+-+ .++.-......+ .. .++++. +
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~-~~d~r~gg~~~~~~~~~~g~~~~~--~~-~~~~v~------p 75 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGA-EFDARTGGGERVRFRGPDGPVHSF--EG-EYLEVV------P 75 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCC-ccceecCCceEEeeecCCCCeeec--ce-EEEEEc------C
Confidence 44688999999999999999999999999998 2211 11112223221 121111111111 11 122222 4
Q ss_pred CceEEEEEEcc--c--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH--HHhCHHHHHHHHHHHHH
Q 004764 172 DRELYFSMVDG--D--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI--IRSDLPVNLQALACRAE 241 (732)
Q Consensus 172 ~rrI~F~~veG--D--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~--ir~~L~~~L~ALk~raE 241 (732)
+.+|.|+-.-. + +..-...|+|.+...+++|.+...... +. +|..-.... +...-...|..|++.++
T Consensus 76 ~~rIv~tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~-~~--~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 76 PERIVFTWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGG-GF--LEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred CcEEEEEeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeec-cc--cchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 67877776533 2 335678899999653333333333222 11 333333222 36666677777776554
No 138
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.14 E-value=0.61 Score=45.86 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=78.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCc----EEEEEEeeCCEEEE--EEE-eccce-------eEEEEEEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA----ISKILSRENNKVRI--LQE-GCKGL-------LYMVLHARVVMD 411 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~----ssrVLer~~g~~rv--~q~-g~~gl-------l~~~~~~rvvLd 411 (732)
|+.++.+++|+++||+.++|-+-|..-+..+- .+...+.++++.++ .+. ....+ +.-.+.... .
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~--~ 78 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTR--T 78 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEE--E
Confidence 45678999999999999999877766655442 33444445555432 221 11111 100111111 1
Q ss_pred EEee--CCCe--EEEEE-EecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 412 ICEQ--HEQE--ISFEQ-VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 412 v~e~--~~rr--Isf~~-veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
-.+. .+.+ ..+.. +.|.--.++|.-+|.+.+ ++|++.+..+++.+ .|+.+..+++++...+...+..-.+.+
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~~-~gt~~~~~g~v~v~--VPlvGgkiE~~v~~~~~~~~~~e~~~~ 155 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAPVSISGTMRLRPDG-GGTRLTVEGEVKVK--VPLVGGKIEKAVAENLRKLLEAEQEFT 155 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCceEEEEEEEEEecCC-CCEEEEEEEEEEEE--EccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1121 1222 22221 225444779999999955 45999999887753 445566677777777777776666554
Q ss_pred H
Q 004764 487 E 487 (732)
Q Consensus 487 E 487 (732)
.
T Consensus 156 ~ 156 (159)
T PF10698_consen 156 A 156 (159)
T ss_pred H
Confidence 3
No 139
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=94.80 E-value=0.32 Score=46.25 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=67.9
Q ss_pred EecCHHHHHHHHhCccccccc-cccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEEEEEE
Q 004764 102 VNADVDSVWNALTDYERLADF-VPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMV 180 (732)
Q Consensus 102 V~AP~e~Vw~VLTDYErlpeF-iP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~F~~v 180 (732)
++||++.||+++||-+.+.+| .+... .++.+.||..++.. +. .+ ..+++ .. ++++|.|+-.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~~~---~~d~~~GG~f~~~~-~~-------~~-G~~~e---v~---pp~rlv~tw~ 62 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGSPA---EMDAKVGGKFSLFN-GS-------VE-GEFTE---LE---KPKKIVQKWR 62 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCCCc---cccCCcCCEEEEec-Cc-------eE-EEEEE---Ec---CCCEEEEEEe
Confidence 479999999999999999998 43222 23444566544321 10 11 11222 21 3577776654
Q ss_pred cccc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHH-HHHHHHHhCHHH-HHHHHHHHH
Q 004764 181 DGDF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAI-FLERIIRSDLPV-NLQALACRA 240 (732)
Q Consensus 181 eGDf---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~-Lv~~~ir~~L~~-~L~ALk~ra 240 (732)
-.+. ....-.|.|++.+ +++|+|+.+..--|...-... .....++..... .|..|++.+
T Consensus 63 ~~~~~~~~~s~vt~~~~~~~-~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 63 FRDWEEDVYSKVTIEFRAVE-EDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred cCCCCCCCceEEEEEEEeCC-CCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 2211 1244679999853 367999998884443321111 233445566666 477777643
No 140
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=93.24 E-value=1.2 Score=53.41 Aligned_cols=144 Identities=10% Similarity=0.011 Sum_probs=90.6
Q ss_pred eeEEEEEEEecCHHHHHHHHhCcc-ccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYE-RLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYE-rlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
+.+++.-+|+|++++||+.|.+.+ .-.+|=..+.+.++|+.-+++.-.++++.....+.+....|=..+++-+.-...+
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 569999999999999999999887 6678999999999999876665555555432221111111111111111100011
Q ss_pred -ceEEEEEEcc----c----c--ceeeEEEEEEecCCC---CeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHH
Q 004764 173 -RELYFSMVDG----D----F--KKFEGKWSIKSGTRS---STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 238 (732)
Q Consensus 173 -rrI~F~~veG----D----f--k~f~GsW~Lepl~~g---~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~ 238 (732)
-.|.+.-++- + + ...-|-|.+.|+... .+|.|+|-+.+++++|.|.. .....+..+..+|..+..
T Consensus 307 sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y-~~s~~~~~~l~mL~~VAg 385 (719)
T PLN00188 307 SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY-IPSFQQHCLLQMLNSVAG 385 (719)
T ss_pred cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccccc-CccccccchHHHHHHHHH
Confidence 1222332211 0 1 122488999997422 57999999999999999955 456667777766665555
No 141
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=92.92 E-value=2.5 Score=44.14 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=98.5
Q ss_pred cCCceEEEEE-EecCcceeEE-EEEEEecCHHHHHHHHhCccccccccccceEEEEEecCC--CCeeEEEEEeeee-eEE
Q 004764 78 EQRKVHCEVE-VVSWRERRIK-AEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPY--PGRIWLEQRGLQR-ALY 152 (732)
Q Consensus 78 ~e~~v~v~v~-~v~~~~rrV~-asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~--ggrirv~Qvg~~~-il~ 152 (732)
+..++.+... +--.+...++ ..+.=+++|+.|++++.|-|==+.|=.+++..+.|+... |+.+ ++.+-... ++.
T Consensus 36 ~k~~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~v-v~w~~kfP~p~~ 114 (219)
T KOG2761|consen 36 DKSTPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEV-VYWVKKFPFPMS 114 (219)
T ss_pred ccCCceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceE-EEEEEeCCcccC
Confidence 4566677662 2222333333 344558899999999999999999999999999998743 3333 22222111 110
Q ss_pred E--EEEEEEEEEEEE-ee-----------cCCCCceEEEEEEccccceeeEEEEEE-ec--CCCCeeEEEEEEEEecCCC
Q 004764 153 W--HIEARVVLDLQE-LI-----------HSASDRELYFSMVDGDFKKFEGKWSIK-SG--TRSSTTTLSYEVNVIPRLN 215 (732)
Q Consensus 153 ~--~~~arvvLdv~E-~~-----------~~~~~rrI~F~~veGDfk~f~GsW~Le-pl--~~g~gT~LtY~l~V~P~~p 215 (732)
- ..-.|+..+..+ .+ .++..+.++- ..+.-.|.+. +. +.+.++...|.....|+++
T Consensus 115 ~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv-------~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~~~ 187 (219)
T KOG2761|consen 115 NRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRV-------TVYRSGWLIRVESRSGDEQGCACEYLYFHNPGGG 187 (219)
T ss_pred CccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEE-------EEEEEEEEEEcccccCCCCccEEEEEEEECCCCC
Confidence 0 001111111110 00 0011212222 4566779998 21 1357899999999999999
Q ss_pred ccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 216 FPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 216 iP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
+|..+++++.++..+..++.|-.-..+.
T Consensus 188 iP~~~v~~~~~~gmp~~vkKm~~a~~~Y 215 (219)
T KOG2761|consen 188 IPKWVVKLAVRKGMPGAVKKMEKALLAY 215 (219)
T ss_pred CcHHHHHHHHHhcChHHHHHHHHHHHhh
Confidence 9999999999999999999887755444
No 142
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=88.49 E-value=11 Score=45.70 Aligned_cols=118 Identities=11% Similarity=0.102 Sum_probs=73.8
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccC-cccccCcCCcEEEEEEeeCCEE-EEEEEeccceeEEEEE--EEEEEEEEe-eCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYE-TLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLH--ARVVMDICE-QHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE-~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gll~~~~~--~rvvLdv~e-~~~r 418 (732)
+.+.+.-+|+|++++||++|.+.. .-.+|-..+.+.++++.-.+.. .++.+...+.+.+... .-+-+++.. ..+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 678899999999999999999887 7788999999999998865544 3323222111100000 001111111 1233
Q ss_pred --eEEEEEEec----C----Cc--ceeEEEEEEEcC--C--CeEEEEEEEEEEeccCccch
Q 004764 419 --EISFEQVEG----D----FD--SFQGKWLFEQLG--S--HHTLLKYSVESKMQKNSLLS 463 (732)
Q Consensus 419 --rIsf~~veG----d----fk--~f~G~W~Lep~g--d--G~TrVty~v~~ep~~d~~Lp 463 (732)
.|.++.+.- + ++ ..-|-|.+.|+. + .+|.|++-+.++++ +|.+
T Consensus 307 sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlk--GW~~ 365 (719)
T PLN00188 307 SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLK--GWGV 365 (719)
T ss_pred cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccC--cccc
Confidence 345555542 2 22 224889999953 2 47999999999986 5654
No 143
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=88.13 E-value=17 Score=35.91 Aligned_cols=121 Identities=14% Similarity=0.240 Sum_probs=66.7
Q ss_pred CHHHHHHHHhc-cCcccccCcCCcEEEEEEeeCCEE-EEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEecCCcce
Q 004764 355 PVSEVWNVMTA-YETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSF 432 (732)
Q Consensus 355 PpE~VW~vLtD-yE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~veGdfk~f 432 (732)
..++||+=|-. +++=-.|+|.+.+|+|+++.++.+ |.... .+ ..+..+ ++..++.++.|.+..|.
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~f--g~---~~v~E~----v~~~~~~~V~f~~~~Gs---- 85 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTF--GG---ATVRER----VTLYPPERVDFAQHDGS---- 85 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEE--TT---EEEEEE----EEEETTTEEEESSSBEE----
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEE--CC---cEEEEE----EEEeCCcEEEEEcCCCC----
Confidence 45689986654 455557999999999999987765 32222 22 234454 44458899999433332
Q ss_pred eEEEEEEEcCCCeEEEEEEEEEEecc---Ccc---chHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 433 QGKWLFEQLGSHHTLLKYSVESKMQK---NSL---LSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 433 ~G~W~Lep~gdG~TrVty~v~~ep~~---d~~---Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+-.-.++..++|.=.++|.......+ ++. --......+.+.....+++.||+.++.
T Consensus 86 ~lt~~I~e~~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~ 147 (149)
T PF08982_consen 86 SLTNIISEPEPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE 147 (149)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEEEEecCCCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22224444445655566665554221 110 012347777788888999999998764
No 144
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=86.13 E-value=7 Score=40.49 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=33.4
Q ss_pred ceeeE-EEEEEecCCCCeeEEEEEE--EEecCCCccHHHHHHHHH
Q 004764 185 KKFEG-KWSIKSGTRSSTTTLSYEV--NVIPRLNFPAIFLERIIR 226 (732)
Q Consensus 185 k~f~G-sW~Lepl~~g~gT~LtY~l--~V~P~~piP~~Lv~~~ir 226 (732)
...+| .|++.|.+.++.+.++|.+ ..+|++.||.++++..+-
T Consensus 148 ~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~~~p 192 (208)
T cd08864 148 RYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKLTIP 192 (208)
T ss_pred EEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhccCc
Confidence 45678 8999986424567899999 999999999999876543
No 145
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=84.16 E-value=40 Score=33.15 Aligned_cols=88 Identities=17% Similarity=0.256 Sum_probs=54.5
Q ss_pred CHHHHHHHH-hccCcccccCcCCcEEEEEEeeCCEE-EEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEe-cCCcc
Q 004764 355 PVSEVWNVM-TAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDS 431 (732)
Q Consensus 355 PpE~VW~vL-tDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ve-Gdfk~ 431 (732)
..+++|.=| .-.++=-.|+|++.+|+|+++.++.+ |..+.+ + .....+ ++..++.++.|.+.. |.
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l~Rel~f~--~---~~v~e~----vt~~~~~~v~f~~~~~g~--- 85 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVLERELTFG--P---AKIRET----VTLEPPSRVHFLQADAGG--- 85 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccccceEEEEecCCCEEEEEEEEC--C---ceEEEE----EEecCCcEEEEEecCCCC---
Confidence 457999855 45666678999999999999887644 332222 2 223444 444578899998776 31
Q ss_pred eeEEEEEEEcCCCeEEEEEEEEEE
Q 004764 432 FQGKWLFEQLGSHHTLLKYSVESK 455 (732)
Q Consensus 432 f~G~W~Lep~gdG~TrVty~v~~e 455 (732)
.-.=.++.-.+|.=.++|..+..
T Consensus 86 -~l~~~iee~~~g~L~lrf~ye~~ 108 (141)
T cd08863 86 -TLTNTIEEPEDGALYLRFVYETT 108 (141)
T ss_pred -eEEEEeccCCCCcEEEEEEEEec
Confidence 22224444445655556655544
No 146
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=49 Score=32.49 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=77.9
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee----eeEEEEEEEEEEEEEEEeecCCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ----RALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~----~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+.....|+||.|.||+--+--+.+...-|..+- |+. .+..+ .|.... .++...-....+-..+|.-. ..
T Consensus 4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~V--V~p--~g~ei--tqgtri~m~l~pfglp~~~tW~Arhte~~~-d~ 76 (153)
T COG4276 4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWIV--VLP--LGSEI--TQGTRIAMGLTPFGLPAGLTWVARHTESGF-DN 76 (153)
T ss_pred eEEeeEecCCHHHHhhhhcCccHHHhcCCCcEE--ecc--CCCcc--cceeeeeecceeecCCCCceEEEEeeeccc-CC
Confidence 567789999999999999999999999998882 332 22111 111111 11111100122233334111 24
Q ss_pred CceEEEEEEcccccee--eEEEEEEecCCCCeeEEEEEEEEecCCC-ccHHHHHHHHHhCHHHHHHH
Q 004764 172 DRELYFSMVDGDFKKF--EGKWSIKSGTRSSTTTLSYEVNVIPRLN-FPAIFLERIIRSDLPVNLQA 235 (732)
Q Consensus 172 ~rrI~F~~veGDfk~f--~GsW~Lepl~~g~gT~LtY~l~V~P~~p-iP~~Lv~~~ir~~L~~~L~A 235 (732)
..+..=.++.|+|... .-.=++.+ .+++|.+.=++..++... +-..+..+.+.-.+..++..
T Consensus 77 ~~~FtDv~i~gPfp~~~WrHtH~F~~--egg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~ 141 (153)
T COG4276 77 GSRFTDVCITGPFPALNWRHTHNFVD--EGGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRS 141 (153)
T ss_pred cceeeeeeecCCccceeeEEEeeeec--CCCcEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHH
Confidence 5666667889999874 33333444 468899888888766554 55566666666666666544
No 147
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=82.83 E-value=45 Score=35.09 Aligned_cols=144 Identities=8% Similarity=0.034 Sum_probs=85.7
Q ss_pred cCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--C-EEEEEEEeccceeE-EEEE-EEEEEEEE
Q 004764 339 NGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--N-KVRILQEGCKGLLY-MVLH-ARVVMDIC 413 (732)
Q Consensus 339 ~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g-~~rv~q~g~~gll~-~~~~-~rvvLdv~ 413 (732)
.+|.+..-...+.=+++|+.|+++..|-+--+.|=-.+...+.++..+ | .+..|...+--.+. ..+. .|..++..
T Consensus 49 ~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~ 128 (219)
T KOG2761|consen 49 KTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESD 128 (219)
T ss_pred CCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecC
Confidence 344333333445568999999999999999999999999999998874 3 33333332111110 0011 11111100
Q ss_pred eeCCCeEEEEEEe--------cCC--cceeEEEEEE----EcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHH
Q 004764 414 EQHEQEISFEQVE--------GDF--DSFQGKWLFE----QLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNL 479 (732)
Q Consensus 414 e~~~rrIsf~~ve--------Gdf--k~f~G~W~Le----p~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L 479 (732)
....-|.-+.+. +.. ..+...|.+. ..++++|...|.....| ++.+|..+++.+++..++..+
T Consensus 129 -~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p--~~~iP~~~v~~~~~~gmp~~v 205 (219)
T KOG2761|consen 129 -EKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNP--GGGIPKWVVKLAVRKGMPGAV 205 (219)
T ss_pred -CceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECC--CCCCcHHHHHHHHHhcChHHH
Confidence 011112222222 111 1566778777 33445688888776666 467999999999999988887
Q ss_pred HHHHHH
Q 004764 480 CAIRDY 485 (732)
Q Consensus 480 ~ALK~r 485 (732)
+-+-..
T Consensus 206 kKm~~a 211 (219)
T KOG2761|consen 206 KKMEKA 211 (219)
T ss_pred HHHHHH
Confidence 766543
No 148
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=79.27 E-value=6.8 Score=34.72 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHcCCC-CCCCCHHHHHhcCcccH---HHHHHHhcCHHHHHHHcCc
Q 004764 550 TNIEVLKAELLEFISKHGQE-GFMPMRKQLRKHGRVDV---EKAITRMGGFRRMASLMNL 605 (732)
Q Consensus 550 ~~~~~l~~el~~~~~~~g~~-g~mP~~~~L~~~gr~dl---~~ai~~~GG~~~va~~lg~ 605 (732)
++-+.--..|.+|+...|.. -.-|. +.....|| +++|..+|||.+|.+.=.|
T Consensus 5 ~~~~~F~~~L~~f~~~~g~~~~~~P~----i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W 60 (92)
T PF01388_consen 5 REREQFLEQLREFHESRGTPIDRPPV----IGGKPVDLYKLYKAVMKRGGFDKVTKNKKW 60 (92)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSS-SE----ETTSE-SHHHHHHHHHHHTSHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCc----CCCEeCcHHHHHHHHHhCcCcccCcccchH
Confidence 45566677899999999976 23343 55555665 5599999998776554333
No 149
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=76.22 E-value=17 Score=37.74 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=39.8
Q ss_pred ceeE-EEEEEEcC-CCeEEEEEEE--EEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 431 SFQG-KWLFEQLG-SHHTLLKYSV--ESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 431 ~f~G-~W~Lep~g-dG~TrVty~v--~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
..+| .|++.|.+ ++.+.++|.+ ..+|. +.+|.++++..+-..+......|-+.+
T Consensus 149 y~SgE~~~~~p~~~~~~~~vew~maT~sDpG--G~IP~wl~n~~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 149 YASVEKISYLPDADGKSNKVEWIMATRSDAG--GNIPRWLTKLTIPKAIAKDVPLFLDWI 206 (208)
T ss_pred EEEEEEEEEcCccCCCcCCEEEEEEEeeCCC--CcCcHHHHhccCchHHHHhHHHHHHHh
Confidence 5678 88988875 5567899987 77774 679999988877777766665555443
No 150
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=74.36 E-value=57 Score=32.24 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=64.0
Q ss_pred EEEEEEEecCH--------HHHHHHHhCcc-ccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEe
Q 004764 96 IKAEMLVNADV--------DSVWNALTDYE-RLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQEL 166 (732)
Q Consensus 96 V~asi~V~AP~--------e~Vw~VLTDYE-rlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~ 166 (732)
+++.+.|+.|- ++||.-|..-- +=-.|+|.+.+|+|++. .++.+ ...+ .| -...+.-.++.+
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e-~~~~~-~R~v------~f-g~~~v~E~v~~~ 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARNPQLFVPGIDSCEVLSE-SDTVL-TREV------TF-GGATVRERVTLY 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH-GGGT-TT--EEEEEEE--SSEE-EEEE------EE-TTEEEEEEEEEE
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhChhhCccccCeEEEEec-CCCeE-EEEE------EE-CCcEEEEEEEEe
Confidence 45566666543 57998776544 44579999999999986 44432 1111 11 011111222222
Q ss_pred ecCCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCcc--------HHHHHHHHHhCHHHHHHHHHH
Q 004764 167 IHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP--------AIFLERIIRSDLPVNLQALAC 238 (732)
Q Consensus 167 ~~~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP--------~~Lv~~~ir~~L~~~L~ALk~ 238 (732)
.+.+|+|.+..|.-= .=.|+.. .++...|+|..+.....-.| ......+-+......++.||+
T Consensus 73 ----~~~~V~f~~~~Gs~l----t~~I~e~-~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe 143 (149)
T PF08982_consen 73 ----PPERVDFAQHDGSSL----TNIISEP-EPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRE 143 (149)
T ss_dssp ----TTTEEEESSSBEEEE----EEEEEEE-ETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCcEEEEEcCCCCEE----EEEEecC-CCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999955555411 1123322 24567777777765332222 134567777777888888888
Q ss_pred HHHh
Q 004764 239 RAER 242 (732)
Q Consensus 239 raEr 242 (732)
.+..
T Consensus 144 ~~~~ 147 (149)
T PF08982_consen 144 LAKE 147 (149)
T ss_dssp HH--
T ss_pred Hhhc
Confidence 7764
No 151
>COG2005 ModE N-terminal domain of molybdenum-binding protein [General function prediction only]
Probab=73.57 E-value=1.6 Score=42.17 Aligned_cols=47 Identities=26% Similarity=0.479 Sum_probs=39.5
Q ss_pred HHHhcCcccHHHHHHHhcCHHHHHHHcCchhhccccCCCCccCChHHHHHHHHH
Q 004764 577 QLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 630 (732)
Q Consensus 577 ~L~~~gr~dl~~ai~~~GG~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~ 630 (732)
..+..||+-|.+||...|-..+.|+.||++ | +..|+-++++++-+.+
T Consensus 15 ~~~g~g~~~LL~~I~etGSIs~AAk~~GiS--Y-----k~AW~~i~~~n~~~~~ 61 (130)
T COG2005 15 LRAGPGRIELLKAIAETGSISAAAKAAGIS--Y-----KSAWDYIKALNRLLGE 61 (130)
T ss_pred cccCchHHHHHHHHHHhCCHHHHHHHcCCC--H-----HHHHHHHHHHHHHhCC
Confidence 345689999999999999999999999999 6 4678888887766555
No 152
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=72.40 E-value=11 Score=34.14 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCHHHHHhcCcccHHHHHHHhcCH
Q 004764 549 QTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGF 596 (732)
Q Consensus 549 ~~~~~~l~~el~~~~~~~g~~g~mP~~~~L~~~gr~dl~~ai~~~GG~ 596 (732)
|-.+++-.+=+.+|+..+| +||..+|.++.-.+|...|..+|=+
T Consensus 8 q~s~~~a~~~~~~l~~~~g----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 8 QTSIKAARKIYRRLFERYG----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp TS-HHHHHHHHHHHHHHHS----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred cCcHHHHHHHHHHHHHHhc----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 4456677777888999998 9999999999999999999996655
No 153
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=69.26 E-value=1.4e+02 Score=31.77 Aligned_cols=142 Identities=12% Similarity=0.138 Sum_probs=73.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcC-CcEEEEEEe---e-----CCEEEEEEEeccce-eEEEEEEEEEEEEEe
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPN-LAISKILSR---E-----NNKVRILQEGCKGL-LYMVLHARVVMDICE 414 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~-V~ssrVLer---~-----~g~~rv~q~g~~gl-l~~~~~~rvvLdv~e 414 (732)
.-+++..|...+..+-++|.|..+|.+++|. |.++++++. . +|.+.+.+.-..-. ....-..-+.|++|.
T Consensus 61 ASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~ 140 (229)
T cd08875 61 ASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCK 140 (229)
T ss_pred EEeeeEEEecCHHHHHHHHhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEE
Confidence 4567778899999999999999999997776 566666543 2 12222111100000 001111122333443
Q ss_pred e-CCCe--EEEEEEecC----Cc-ce------eEEEEEEEcCCCeEEEEEE--EEEEeccCccchHHHHHHHHHhhHHHH
Q 004764 415 Q-HEQE--ISFEQVEGD----FD-SF------QGKWLFEQLGSHHTLLKYS--VESKMQKNSLLSEAIMEEVIYEDLPSN 478 (732)
Q Consensus 415 ~-~~rr--Isf~~veGd----fk-~f------~G~W~Lep~gdG~TrVty~--v~~ep~~d~~Lp~~lv~r~lr~~l~~~ 478 (732)
. .+.. |.=..+++. .. .+ -.-|.+++.++|.|.|++- ++++......++..++...+--....-
T Consensus 141 ~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw 220 (229)
T cd08875 141 QLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRW 220 (229)
T ss_pred EeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHH
Confidence 2 2222 122222221 11 22 2335788999999999986 444442112244455555555555555
Q ss_pred HHHHHHHH
Q 004764 479 LCAIRDYV 486 (732)
Q Consensus 479 L~ALK~rA 486 (732)
+..+.+..
T Consensus 221 ~a~lqRqc 228 (229)
T cd08875 221 VATLQRQC 228 (229)
T ss_pred HHHHHHhc
Confidence 55555443
No 154
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=68.90 E-value=2.3 Score=34.96 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=27.7
Q ss_pred ccHHHHHHHhcCHHHHHHHcCchhhccccCCCCccCChHHHHHHH
Q 004764 584 VDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEI 628 (732)
Q Consensus 584 ~dl~~ai~~~GG~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el 628 (732)
..+.-+|..+|.+.++|+.||.+. ...|..+.+|++++
T Consensus 4 l~~f~~v~~~gs~~~AA~~l~is~-------~~vs~~i~~LE~~l 41 (60)
T PF00126_consen 4 LRYFLAVAETGSISAAAEELGISQ-------SAVSRQIKQLEEEL 41 (60)
T ss_dssp HHHHHHHHHHSSHHHHHHHCTSSH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHhhccc-------hHHHHHHHHHHHHh
Confidence 346779999999999999999993 34444455555443
No 155
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=64.91 E-value=1.5e+02 Score=29.22 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEEEEEE----cc--------cc-ceeeEEEEEEecCCCCee
Q 004764 136 YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMV----DG--------DF-KKFEGKWSIKSGTRSSTT 202 (732)
Q Consensus 136 ~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~F~~v----eG--------Df-k~f~GsW~Lepl~~g~gT 202 (732)
++++.++ +.+...++.| ++.-+++++-.+. ...+.+++. +| +| -.+.|.-.+.+ .++.|
T Consensus 28 ~~~~yr~-~~~~~~~~~~--~v~P~v~l~v~~~---~~~~~i~~~~~~l~G~~~~~~~~~f~l~~~~~l~~~~--~~~~t 99 (158)
T PF09366_consen 28 GDNTYRL-KMRPFQFFGF--EVEPVVDLRVWPQ---DDGLTIRSLDCELRGSPLVEQNDGFSLDLQASLYPEE--PPGRT 99 (158)
T ss_pred CCCeEEE-EEcCccEEEE--EEEEEEEEEEEEc---CCCeEEEEEEEEEeCCCccccCCcEEEEEEEEEEEec--CCCce
Confidence 5566554 4665556655 5555555555443 122333222 33 13 35667666655 35788
Q ss_pred EEEEEEEEecCCCccHHH-------HHHHHHhCHHHHHHHHHHHHH
Q 004764 203 TLSYEVNVIPRLNFPAIF-------LERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 203 ~LtY~l~V~P~~piP~~L-------v~~~ir~~L~~~L~ALk~raE 241 (732)
.|.+++++.-.+.+|+++ ++..-...+...+..++.+..
T Consensus 100 ~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~ 145 (158)
T PF09366_consen 100 RLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFL 145 (158)
T ss_pred EEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877776666654 444444445555555555443
No 156
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=59.14 E-value=5.3 Score=36.56 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=29.6
Q ss_pred cHHHHHHHhcCHHHHHHHcCchhhccccCCCCccCChHHHHHHHHH
Q 004764 585 DVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 630 (732)
Q Consensus 585 dl~~ai~~~GG~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~ 630 (732)
-+..||..+|.+.++|++||.+ +..-|..+..|+++|..
T Consensus 8 ~~~~av~~~gSis~AA~~L~iS-------~stvs~~I~~LE~~lg~ 46 (99)
T TIGR00637 8 ALLKAIARMGSISQAAKDAGIS-------YKSAWDYIRAMNNLSGE 46 (99)
T ss_pred HHHHHHHHhCCHHHHHHHHCCC-------HHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999 34455556666655543
No 157
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=58.35 E-value=4.8 Score=36.07 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=37.1
Q ss_pred CHHHHHHHcCchhhccccCCCCccCChHHHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 004764 595 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 661 (732)
Q Consensus 595 G~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~f~~~~----g~~~~~mP~~~~l~~agR~Dl~~a~~ 661 (732)
-|..+|.+||++.+-=.+--. +|-.++.+........| |-....---...|..+||.||++.|+
T Consensus 17 dW~~Lar~L~vs~~dI~~I~~---e~p~~l~~Q~~~~L~~W~~r~g~~At~~~L~~AL~~i~R~div~~~~ 84 (84)
T cd08805 17 SWAELARELQFSVEDINRIRV---ENPNSLLEQSTALLNLWVDREGENAKMSPLYPALYSIDRLTIVNMLE 84 (84)
T ss_pred hHHHHHHHcCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhcCccchHHHHHHHHHHCChHHHHHhhC
Confidence 378899999998531000000 11133555555554444 43333334467789999999999874
No 158
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=58.01 E-value=9 Score=34.26 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHcCCC-CCCCCHHHHHhcCcccH---HHHHHHhcCHHHH
Q 004764 551 NIEVLKAELLEFISKHGQE-GFMPMRKQLRKHGRVDV---EKAITRMGGFRRM 599 (732)
Q Consensus 551 ~~~~l~~el~~~~~~~g~~-g~mP~~~~L~~~gr~dl---~~ai~~~GG~~~v 599 (732)
+.+.--..|.+|+...|.. ...|. +.....|| +.+|.++|||.+|
T Consensus 2 ~~~~F~~~L~~F~~~~g~~~~~~P~----i~g~~vdL~~Ly~~V~~~GG~~~v 50 (93)
T smart00501 2 ERVLFLDRLYKFMEERGSPLKKIPV----IGGKPLDLYRLYRLVQERGGYDQV 50 (93)
T ss_pred cHHHHHHHHHHHHHHcCCcCCcCCe----ECCEeCcHHHHHHHHHHccCHHHH
Confidence 3456678899999999864 12232 35555565 5699999998864
No 159
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=52.33 E-value=5.9 Score=42.36 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=35.7
Q ss_pred hcCcccHHHHHHHhcCHHHHHHHcCchhhccccCCCCccCChHHHHHHHHH
Q 004764 580 KHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 630 (732)
Q Consensus 580 ~~gr~dl~~ai~~~GG~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~ 630 (732)
..++..+..+|..+|.+.+.|++||++ .+.-|.-+.+|+++|-.
T Consensus 18 ~~~~l~~l~~v~~~gS~s~AA~~l~~s-------~~a~s~~i~~le~~lg~ 61 (263)
T PRK10676 18 DPRRISLLKQIALTGSISQGAKLAGIS-------YKSAWDAINEMNQLSEH 61 (263)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHhCCC-------HHHHHHHHHHHHHHhCC
Confidence 456677899999999999999999999 35678877887776643
No 160
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=50.75 E-value=1.6e+02 Score=31.35 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=29.4
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceE
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC 128 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~ 128 (732)
.-+++..|...+..+-++|.|-++|.+++|.+.+
T Consensus 61 ASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~ 94 (229)
T cd08875 61 ASRACGLVMMNAIKLVEILMDVNKWSELFPGIVS 94 (229)
T ss_pred EEeeeEEEecCHHHHHHHHhChhhhhhhhhhhcc
Confidence 4677888999999999999999999997776654
No 161
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=48.81 E-value=35 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=29.0
Q ss_pred cCCCCccCChHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Q 004764 612 RKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFE 649 (732)
Q Consensus 612 r~p~gyw~~~~~l~~el~~f~~~~g~~~~~mP~~~~l~ 649 (732)
-...|+|+ +.+++.|+.||+..|+++.-.....+++
T Consensus 20 ~~~~g~~~--~~t~~Av~~fQ~~~gL~~tG~~d~~T~~ 55 (57)
T PF01471_consen 20 GPVDGIFD--PETREAVKAFQKANGLPVTGVVDPETWE 55 (57)
T ss_dssp SSTTSBSH--HHHHHHHHHHHHHTTS-SSSSBCHHHHH
T ss_pred CCCCCCcC--HHHHHHHHHHHHHcCcCCCCccCHHHHh
Confidence 45779998 9999999999999999987776666654
No 162
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=46.97 E-value=19 Score=32.15 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCHHHHHH
Q 004764 622 ENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSR 671 (732)
Q Consensus 622 ~~l~~el~~f~~~~g~~~~~mP~~~~l~~agR~Dl~~a~~~~Gg~~~va~ 671 (732)
+.--+.|.+|+++.|.+....|.. +=....=|.|.++|.+.||+.+|.+
T Consensus 4 ~~F~~~L~~F~~~~g~~~~~~P~i-~g~~vdL~~Ly~~V~~~GG~~~v~~ 52 (93)
T smart00501 4 VLFLDRLYKFMEERGSPLKKIPVI-GGKPLDLYRLYRLVQERGGYDQVTK 52 (93)
T ss_pred HHHHHHHHHHHHHcCCcCCcCCeE-CCEeCcHHHHHHHHHHccCHHHHcC
Confidence 344567889999999875566654 2234444789999999999987543
No 163
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=45.60 E-value=3.1e+02 Score=27.05 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=58.2
Q ss_pred EEEEEEEecC-------HHHHHHHHh-CccccccccccceEEEEEecCCCCee-EEEEEeeeeeEEEEEEEEEEEEEEEe
Q 004764 96 IKAEMLVNAD-------VDSVWNALT-DYERLADFVPNLACSGRIPCPYPGRI-WLEQRGLQRALYWHIEARVVLDLQEL 166 (732)
Q Consensus 96 V~asi~V~AP-------~e~Vw~VLT-DYErlpeFiP~v~~SeVLe~~~ggri-rv~Qvg~~~il~~~~~arvvLdv~E~ 166 (732)
+++.+.|+.| .+++|+-|. -.++=-.|+|.+.+|+|++. +++.+ |..+-|. +.+.-.++-.
T Consensus 2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e-~~~~l~Rel~f~~---------~~v~e~vt~~ 71 (141)
T cd08863 2 FEHTVPINDPGNIPTLTRAQLWRGLVLRAREPQLFVPGLDRCEVLSE-SGTVLERELTFGP---------AKIRETVTLE 71 (141)
T ss_pred ccEEEecCCCCCCCccCHHHHHhHHHhhhCCchhcccccceEEEEec-CCCEEEEEEEECC---------ceEEEEEEec
Confidence 3455666643 468998665 45555679999999999985 44422 2222221 1121222222
Q ss_pred ecCCCCceEEEEEEc-cccceeeEEEEEEecCCCCeeEEEEEEEEecCCCcc
Q 004764 167 IHSASDRELYFSMVD-GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP 217 (732)
Q Consensus 167 ~~~~~~rrI~F~~ve-GDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP 217 (732)
.+.+|+|.+.. |.. -.=+++.. .++...|+|..+.......|
T Consensus 72 ----~~~~v~f~~~~~g~~----l~~~iee~-~~g~L~lrf~ye~~~p~~~~ 114 (141)
T cd08863 72 ----PPSRVHFLQADAGGT----LTNTIEEP-EDGALYLRFVYETTLPEVAE 114 (141)
T ss_pred ----CCcEEEEEecCCCCe----EEEEeccC-CCCcEEEEEEEEecCCCcCc
Confidence 46899999887 421 12223332 24667888888775544343
No 164
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=44.84 E-value=79 Score=29.07 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=45.2
Q ss_pred CCCeEEEEEEecCCcceeEEE--EEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 416 HEQEISFEQVEGDFDSFQGKW--LFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 416 ~~rrIsf~~veGdfk~f~G~W--~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+.+.+.|..--.-=..+.|.- .+++..++.|++.....|.+--..+++. +.+-+......+-.++|++||+
T Consensus 20 P~reL~W~~~~~~~~l~~~~~~~~le~~~~~~t~~~q~e~F~Gvlv~fv~~--lr~~~~~~f~~~n~alr~raE~ 92 (93)
T COG4891 20 PLRELTWLGNVRFPGLLDGERYFELEALWGGRTRFAQGESFSGVLVPFVSE--LRRGLTASFENMNPALRARAEA 92 (93)
T ss_pred cchheeeecccccceEEeeEEEEEEeecCCccceeeccceecceeeccchh--hhccchhhhhhhCHHHHhhhhc
Confidence 457888874321111345555 5667778889988877776321112232 5666677788888999999985
No 165
>PF13309 HTH_22: HTH domain
Probab=41.70 E-value=21 Score=30.12 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHH------hcCHHHHHHHhcc
Q 004764 623 NLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEK------WGGLHEVSRLLSL 675 (732)
Q Consensus 623 ~l~~el~~f~~~~g~~~~~mP~~~~l~~agR~Dl~~a~~~------~Gg~~~va~~lg~ 675 (732)
.+++-|..++.++|.++..|+... |-+|++.|.. =|.+..||+.||.
T Consensus 2 ~i~~~i~~~~~~~~~~~~~l~~~~------k~~iV~~L~~~G~F~lKgav~~vA~~L~i 54 (64)
T PF13309_consen 2 LIESIIEEVIAEVGKPPSRLSKEE------KKEIVRQLYEKGIFLLKGAVEYVAEKLGI 54 (64)
T ss_pred hHHHHHHHHHHHhCCChhhCCHHH------HHHHHHHHHHCCCcccCcHHHHHHHHHCC
Confidence 466778888899999988887654 3445555554 3566789999986
No 166
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=35.84 E-value=25 Score=31.43 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=35.4
Q ss_pred CHHHHHHHcCchhhccccCCCCccCChHHHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 004764 595 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 661 (732)
Q Consensus 595 G~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~f~~~~----g~~~~~mP~~~~l~~agR~Dl~~a~~ 661 (732)
.|..+|..||++..-=.+-... +-.++.+........| |-+..+=--..-|.++||.||+..|+
T Consensus 17 dW~~LA~eLg~s~~dI~~i~~e---~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~~~ 84 (84)
T cd08803 17 SWTELARELNFSVDEINQIRVE---NPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLE 84 (84)
T ss_pred cHHHHHHHcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHhcC
Confidence 5889999999994310000011 1233444444444455 32211112246789999999998874
No 167
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=35.65 E-value=29 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=33.6
Q ss_pred CHHHHHHHcCchhhccccCCCCccCChHHHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 004764 595 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 661 (732)
Q Consensus 595 G~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~f~~~~----g~~~~~mP~~~~l~~agR~Dl~~a~~ 661 (732)
.|..+|.+||++-.-=.+--..| -.++.+...+....| |.....=--...|+++||.||+..++
T Consensus 17 dW~~LAr~Lg~~~~dI~~i~~~~---~~~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~~~~ 84 (84)
T cd08317 17 DWPQLARELGVSETDIDLIKAEN---PNSLAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVEKCE 84 (84)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHC---CCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHHHhC
Confidence 57889999999842000000001 112333344455555 32211112246678899999998764
No 168
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=35.55 E-value=48 Score=25.44 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=22.9
Q ss_pred HHHhchHHHHHHHHHhc-CHHHHHHHhcccc
Q 004764 648 FERAGRYDIARALEKWG-GLHEVSRLLSLKL 677 (732)
Q Consensus 648 l~~agR~Dl~~a~~~~G-g~~~va~~lg~~~ 677 (732)
+++.-+.=|..||+++| -...+|+.||+.-
T Consensus 2 l~~~E~~~i~~aL~~~~gn~~~aA~~Lgisr 32 (42)
T PF02954_consen 2 LEEFEKQLIRQALERCGGNVSKAARLLGISR 32 (42)
T ss_dssp HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCCCH
Confidence 55666778999999977 5778999999864
No 169
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=35.33 E-value=14 Score=32.18 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=15.6
Q ss_pred EEEEEEcc-ccceeeEEEEEEec
Q 004764 175 LYFSMVDG-DFKKFEGKWSIKSG 196 (732)
Q Consensus 175 I~F~~veG-Dfk~f~GsW~Lepl 196 (732)
..|.+..- =++.|+|+|.|+|+
T Consensus 20 ~kykk~K~~fMK~FEGswKVepl 42 (74)
T PF02713_consen 20 AKYKKEKMMFMKVFEGSWKVEPL 42 (74)
T ss_pred HHHhhhheeeeeeecceeEEEee
Confidence 44544332 25999999999995
No 170
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=34.53 E-value=86 Score=29.82 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCHHHHHhcCcccHHHHHHHhcCHHHHHHHcCchhhccccCCCCccCChHHHHHHHHH
Q 004764 551 NIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 630 (732)
Q Consensus 551 ~~~~l~~el~~~~~~~g~~g~mP~~~~L~~~gr~dl~~ai~~~GG~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~ 630 (732)
.+..|..|-+.|+..| |...|-..+||+.||.+ | -+++.=|.+
T Consensus 30 ~~~~L~~E~~~Fi~~F-----------------------i~~rGnlKe~e~~lgiS--Y------------PTvR~rLd~ 72 (113)
T PF09862_consen 30 WFARLSPEQLEFIKLF-----------------------IKNRGNLKEMEKELGIS--Y------------PTVRNRLDK 72 (113)
T ss_pred hhhcCCHHHHHHHHHH-----------------------HHhcCCHHHHHHHHCCC--c------------HHHHHHHHH
Confidence 4666777777777766 67789999999999999 6 578888888
Q ss_pred HHHHhCCCCCCCCCHHHHHHhchHHHHHHHHH
Q 004764 631 FQRSWGMDPSFMPSRKSFERAGRYDIARALEK 662 (732)
Q Consensus 631 f~~~~g~~~~~mP~~~~l~~agR~Dl~~a~~~ 662 (732)
.++..|. .|....-....|.+|..+|+.
T Consensus 73 ii~~lg~----~~~~~~~~~~~~~~IL~~L~~ 100 (113)
T PF09862_consen 73 IIEKLGY----EEDEEEEEEDERKEILDKLEK 100 (113)
T ss_pred HHHHhCC----CCCcccccchhHHHHHHHHHc
Confidence 9999987 444445556677788887773
No 171
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=34.44 E-value=58 Score=28.76 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCHHHHHHH
Q 004764 622 ENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRL 672 (732)
Q Consensus 622 ~~l~~el~~f~~~~g~~~~~mP~~~~l~~agR~Dl~~a~~~~Gg~~~va~~ 672 (732)
++--+.|.+|+++.|.+....|.. .=....=|.|.++|..+||+.+|.+.
T Consensus 8 ~~F~~~L~~f~~~~g~~~~~~P~i-~g~~vDL~~Ly~~V~~~GG~~~V~~~ 57 (92)
T PF01388_consen 8 EQFLEQLREFHESRGTPIDRPPVI-GGKPVDLYKLYKAVMKRGGFDKVTKN 57 (92)
T ss_dssp HHHHHHHHHHHHHTTSSSSS-SEE-TTSE-SHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcC-CCEeCcHHHHHHHHHhCcCcccCccc
Confidence 344567889999999886566652 22233348999999999999876443
No 172
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=34.44 E-value=33 Score=30.55 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHcCchhhccccC-CCCccCChHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHhchHHHHHHHH
Q 004764 596 FRRMASLMNLALAYKHRK-PKGYWDNLENLEEEISRFQRSWGMDPSFMP----SRKSFERAGRYDIARALE 661 (732)
Q Consensus 596 ~~~va~~lg~~~~~~~r~-p~gyw~~~~~l~~el~~f~~~~g~~~~~mP----~~~~l~~agR~Dl~~a~~ 661 (732)
|..+|.+||++-+- -.. .. +|.+++++......+.|-...+.== -...|...||.||++.++
T Consensus 18 Wk~LAr~Lg~se~d-I~~i~~---~~~~~~~eq~~~mL~~W~~r~g~~At~~~L~~aL~~i~r~Div~~~~ 84 (84)
T cd08804 18 WTELARELDFTEEQ-IHQIRI---ENPNSLQDQSHALLKYWLERDGKHATDTNLMKCLTKINRMDIVHLME 84 (84)
T ss_pred HHHHHHHcCCCHHH-HHHHHH---HCcccHHHHHHHHHHHHHHccCCCchHHHHHHHHHHcChHHHHHHhC
Confidence 88999999998531 111 01 1234466666666666733211111 234568999999998763
No 173
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=32.47 E-value=27 Score=36.60 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.5
Q ss_pred cHHHHHHHhcCHHHHHHHcCchh
Q 004764 585 DVEKAITRMGGFRRMASLMNLAL 607 (732)
Q Consensus 585 dl~~ai~~~GG~~~va~~lg~~~ 607 (732)
-...+|.++|.|.++|++||++.
T Consensus 7 ~~f~~v~~~gs~s~AA~~L~isq 29 (275)
T PRK03601 7 KTFLEVSRTRHFGRAAESLYLTQ 29 (275)
T ss_pred HHHHHHHHcCCHHHHHHHhCCCh
Confidence 45779999999999999999993
No 174
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=31.73 E-value=85 Score=28.21 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCH
Q 004764 621 LENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGL 666 (732)
Q Consensus 621 ~~~l~~el~~f~~~~g~~~~~mP~~~~l~~agR~Dl~~a~~~~Gg~ 666 (732)
.++...-+.+|++.+| +||.++|.+++-+||..+|+.+|=.
T Consensus 11 ~~~a~~~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 11 IKAARKIYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 4566667788999998 9999999999999999999986654
No 175
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=31.22 E-value=50 Score=29.52 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=40.2
Q ss_pred CHHHHHHHcCchhhccccCCCCccCChHHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHhchHHHHHHHH
Q 004764 595 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPS-----RKSFERAGRYDIARALE 661 (732)
Q Consensus 595 G~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~f~~~~g~~~~~mP~-----~~~l~~agR~Dl~~a~~ 661 (732)
-|..+|..||++-+-=.+-...| -++|++.+.+....|-...+..|. .+-|.++||.||+.-|+
T Consensus 15 ~Wk~lar~LGlse~~Id~Ie~~~---~~dl~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~dlae~l~ 83 (86)
T cd08779 15 DWQAIGLHLGLSYRELQRIKYNN---RDDLDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQDLADEVR 83 (86)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHC---ccCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHHHHHHHHH
Confidence 37888999999854212222333 245777777777777432222222 35688899999998876
No 176
>PRK10236 hypothetical protein; Provisional
Probab=30.65 E-value=3.1e+02 Score=29.35 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=45.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHcCCCCCCCCHHHHHhcCcccHHHHHHHhcCHHHHHHHcCchhhccccCCCCccCChHHH
Q 004764 545 VPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENL 624 (732)
Q Consensus 545 ~~g~~~~~~~l~~el~~~~~~~g~~g~mP~~~~L~~~gr~dl~~ai~~~GG~~~va~~lg~~~~~~~r~p~gyw~~~~~l 624 (732)
.|.|.+-|+.+..||+.| |.+++| .-|| |+...++.|- ..|+++|+.+ | +.-|+ ...+
T Consensus 56 ~~~~~~yw~~Ia~elq~f----Ggnt~~---n~lR--G~Gv~YreIL-----~DVc~~LKV~--y-----~~~~s-t~~i 113 (237)
T PRK10236 56 PEQHRRNWQLIAGELQHF----GGDSIA---NKLR--GHGKLYRAIL-----LDVSKRLKLK--A-----DKEMS-TFEI 113 (237)
T ss_pred chhHHHHHHHHHHHHHHh----cchHHH---HHHh--cCCccHHHHH-----HHHHHHcCCC--C-----CCCCC-HHHH
Confidence 567888999999999996 988865 3444 5555777774 5799999888 4 23333 6777
Q ss_pred HHHHHH
Q 004764 625 EEEISR 630 (732)
Q Consensus 625 ~~el~~ 630 (732)
|.||..
T Consensus 114 E~~il~ 119 (237)
T PRK10236 114 EQQLLE 119 (237)
T ss_pred HHHHHH
Confidence 777655
No 177
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=27.69 E-value=57 Score=25.46 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=17.4
Q ss_pred cHHHHHHHhc-C-HHHHHHHcC
Q 004764 585 DVEKAITRMG-G-FRRMASLMN 604 (732)
Q Consensus 585 dl~~ai~~~G-G-~~~va~~lg 604 (732)
-|.+||..|| + |.+||+.|+
T Consensus 11 ~l~~~v~~~g~~~W~~Ia~~~~ 32 (48)
T PF00249_consen 11 KLLEAVKKYGKDNWKKIAKRMP 32 (48)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHS
T ss_pred HHHHHHHHhCCcHHHHHHHHcC
Confidence 3678999998 7 999999998
No 178
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=27.09 E-value=1.3e+02 Score=26.85 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=33.9
Q ss_pred cCHHHHHHHcCchhhccccCCCCccCChHHHHHHHHHHHH------HhCCCCCCCCCHHHHHHhchH
Q 004764 594 GGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQR------SWGMDPSFMPSRKSFERAGRY 654 (732)
Q Consensus 594 GG~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~~f~~------~~g~~~~~mP~~~~l~~agR~ 654 (732)
=|.+++|++||++. .+.+.||..+-+ ..|-.-+++||.+-++--+|.
T Consensus 24 VgSk~ia~~l~~s~--------------aTIRN~M~~Le~lGlve~~p~~s~GriPT~~aYr~~~~~ 76 (78)
T PF03444_consen 24 VGSKTIAEELGRSP--------------ATIRNEMADLEELGLVESQPHPSGGRIPTDKAYRALNRQ 76 (78)
T ss_pred cCHHHHHHHHCCCh--------------HHHHHHHHHHHHCCCccCCCCCCCCCCcCHHHHHHHccc
Confidence 38899999998884 567777766433 244556999999988766553
No 179
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.90 E-value=4.6e+02 Score=24.69 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=31.0
Q ss_pred CCCeEEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEec
Q 004764 416 HEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ 457 (732)
Q Consensus 416 ~~rrIsf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~ 457 (732)
+++...+... .+...+.-.|.+++.++|.|.|+|.-.+.+.
T Consensus 63 ~~~~Y~~~~~-s~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 63 PNKRYAATFS-SSRGTFTISYEIEPLDDGSIEVTYEEEYESK 103 (120)
T ss_pred CCCEEEEEEE-ecCCCEEEEEEEEECCCCcEEEEEEEEEccC
Confidence 4555555433 3445678899999999999999999988763
No 180
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=26.55 E-value=45 Score=34.69 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHhcCHHHHHHHcCch
Q 004764 586 VEKAITRMGGFRRMASLMNLA 606 (732)
Q Consensus 586 l~~ai~~~GG~~~va~~lg~~ 606 (732)
...+|.++|+|.++|++||++
T Consensus 10 ~f~~v~e~~s~t~AA~~L~is 30 (290)
T PRK10837 10 VFAEVLKSGSTTQASVMLALS 30 (290)
T ss_pred HHHHHHHcCCHHHHHHHhCCC
Confidence 467999999999999999998
No 181
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=26.18 E-value=47 Score=34.61 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=28.3
Q ss_pred cccHHHHHHHhcCHHHHHHHcCchhhccccCCCCccCChHHHHHHHH
Q 004764 583 RVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEIS 629 (732)
Q Consensus 583 r~dl~~ai~~~GG~~~va~~lg~~~~~~~r~p~gyw~~~~~l~~el~ 629 (732)
...+..+|.++|.|.++|++||.+ +..-...+.+||+||.
T Consensus 11 ~l~~f~~v~~~gs~t~AA~~L~it-------q~avS~~i~~LE~~lg 50 (294)
T PRK09986 11 LLRYFLAVAEELHFGRAAARLNIS-------QPPLSIHIKELEDQLG 50 (294)
T ss_pred HHHHHHHHHHhcCHHHHHHHhCCC-------CCHHHHHHHHHHHHhC
Confidence 344567999999999999999998 3344444555555543
No 182
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=24.79 E-value=6.7e+02 Score=24.59 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=62.3
Q ss_pred HHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE----Eec--CC-----
Q 004764 361 NVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ----VEG--DF----- 429 (732)
Q Consensus 361 ~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~----veG--df----- 429 (732)
+.|.+-+++=.-+..-..++-+ .+++.++.... -+++.+...-.+.+++....+. +..+. ++| .+
T Consensus 6 ~YL~~~~r~~~~~~d~~~ie~l--~~~~yr~~~~~-~~~~~~~v~P~v~l~v~~~~~~-~~i~~~~~~l~G~~~~~~~~~ 81 (158)
T PF09366_consen 6 EYLSDPQRWFSALFDPMRIEPL--GDNTYRLKMRP-FQFFGFEVEPVVDLRVWPQDDG-LTIRSLDCELRGSPLVEQNDG 81 (158)
T ss_pred HHHhCchhHHHHhcCHHHcEEc--CCCeEEEEEcC-ccEEEEEEEEEEEEEEEEcCCC-eEEEEEEEEEeCCCccccCCc
Confidence 3444444444433322333322 34555654433 3444456666666666654443 22221 123 11
Q ss_pred -c-ceeEEEEEEEcCCCeEEEEEEEEEEec-----cCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 430 -D-SFQGKWLFEQLGSHHTLLKYSVESKMQ-----KNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 430 -k-~f~G~W~Lep~gdG~TrVty~v~~ep~-----~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
. .++|.-+..+ ..+.|.|.+++++... .-..+|..+++..-...+...+..++.+.-
T Consensus 82 f~l~~~~~l~~~~-~~~~t~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~ 145 (158)
T PF09366_consen 82 FSLDLQASLYPEE-PPGRTRLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFL 145 (158)
T ss_pred EEEEEEEEEEEec-CCCceEEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3344444443 4567999888666531 112357777777777777777777766654
No 183
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=23.81 E-value=50 Score=34.44 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.3
Q ss_pred HHHHHHHhcCHHHHHHHcCch
Q 004764 586 VEKAITRMGGFRRMASLMNLA 606 (732)
Q Consensus 586 l~~ai~~~GG~~~va~~lg~~ 606 (732)
+..+|..+|.+.++|++||++
T Consensus 8 ~f~~v~~~gs~s~AA~~L~is 28 (296)
T PRK11242 8 YFLAVAEHGNFTRAAEALHVS 28 (296)
T ss_pred HHHHHHHhCCHHHHHHHcCCC
Confidence 467899999999999999999
No 184
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=23.33 E-value=69 Score=27.01 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.2
Q ss_pred HHHHHHhcCHHHHHHHcCchh
Q 004764 587 EKAITRMGGFRRMASLMNLAL 607 (732)
Q Consensus 587 ~~ai~~~GG~~~va~~lg~~~ 607 (732)
.+||...||..++|+.||.+.
T Consensus 3 ~~aI~~~G~~~~lAkalGVs~ 23 (60)
T PF14549_consen 3 KDAIKYFGGQSKLAKALGVSP 23 (60)
T ss_dssp HHHHHHHSSHHHHHHHHTS-H
T ss_pred HHHHHHHCCHHHHHHHHCCCH
Confidence 468999999999999999984
No 185
>PRK01905 DNA-binding protein Fis; Provisional
Probab=23.30 E-value=2.4e+02 Score=24.50 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH----Hh-CCCCCCCCCHHHHHHhchHHHHHHHHHhcC-HHHHHHHhccccc
Q 004764 623 NLEEEISRFQR----SW-GMDPSFMPSRKSFERAGRYDIARALEKWGG-LHEVSRLLSLKLR 678 (732)
Q Consensus 623 ~l~~el~~f~~----~~-g~~~~~mP~~~~l~~agR~Dl~~a~~~~Gg-~~~va~~lg~~~~ 678 (732)
|.++||.+-+. +. +..|+- |....+.+..+.=|.++++.+|| ...+|++||+.-+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~E~~~i~~aL~~~~gn~s~aAr~LGIsrs 65 (77)
T PRK01905 5 NIEQCIRDSLDQYFRDLDGSNPHD-VYDMVLSCVEKPLLEVVMEQAGGNQSLAAEYLGINRN 65 (77)
T ss_pred cHHHHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHH
Confidence 56666666443 32 222211 12334555566668999999887 8899999998543
No 186
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=23.00 E-value=54 Score=33.70 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred HHHHHHHhcCHHHHHHHcCch
Q 004764 586 VEKAITRMGGFRRMASLMNLA 606 (732)
Q Consensus 586 l~~ai~~~GG~~~va~~lg~~ 606 (732)
...||..+|.|.++|++||.+
T Consensus 4 ~f~~v~~~gs~~~AA~~L~is 24 (279)
T TIGR03339 4 AFHAVARCGSFTRAAERLGLS 24 (279)
T ss_pred hhHHHHhcCCHHHHHHHhcCC
Confidence 467999999999999999998
No 187
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=22.15 E-value=1.6e+02 Score=26.89 Aligned_cols=55 Identities=7% Similarity=0.124 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHh-CCCCCCCCCHHHHHHhchHHHHHHHHHhcC-HHHHHHHhcccc
Q 004764 622 ENLEEEISRFQRSW-GMDPSFMPSRKSFERAGRYDIARALEKWGG-LHEVSRLLSLKL 677 (732)
Q Consensus 622 ~~l~~el~~f~~~~-g~~~~~mP~~~~l~~agR~Dl~~a~~~~Gg-~~~va~~lg~~~ 677 (732)
+.++..|.+|..++ |.+|.-+-. ..+.+.-|.=|..|++++|| ...+|+.||+.-
T Consensus 26 ~~~~~~l~~~~~~l~~~~~~~~~~-~~l~~~Er~~i~~aL~~~~gn~s~AAr~LGIsR 82 (95)
T PRK00430 26 DSVKQALKNYFAQLNGQDVNDLYE-LVLAEVEAPLLDMVMQYTRGNQTRAALMLGINR 82 (95)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 45666666666655 444322211 12333445558899999877 899999999854
No 188
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=21.87 E-value=52 Score=34.63 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.7
Q ss_pred HHHHHHHhcCHHHHHHHcCch
Q 004764 586 VEKAITRMGGFRRMASLMNLA 606 (732)
Q Consensus 586 l~~ai~~~GG~~~va~~lg~~ 606 (732)
...+|.++|+|.++|++||++
T Consensus 13 ~f~~v~~~gs~s~AA~~L~is 33 (297)
T PRK11139 13 AFEAAARHLSFTRAAEELFVT 33 (297)
T ss_pred HHHHHHHhCCHHHHHHHhCCC
Confidence 577999999999999999999
No 189
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=21.05 E-value=59 Score=34.13 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.5
Q ss_pred HHHHHHHhcCHHHHHHHcCchh
Q 004764 586 VEKAITRMGGFRRMASLMNLAL 607 (732)
Q Consensus 586 l~~ai~~~GG~~~va~~lg~~~ 607 (732)
...+|.++|.|.++|++||.+.
T Consensus 10 ~f~~v~~~gS~s~AA~~L~isq 31 (300)
T TIGR02424 10 CFVEVARQGSVKRAAEALHITQ 31 (300)
T ss_pred HHHHHHHhCCHHHHHHHhCCCh
Confidence 4679999999999999999983
No 190
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=20.85 E-value=66 Score=34.09 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred HHHHHHHhcCHHHHHHHcCchh
Q 004764 586 VEKAITRMGGFRRMASLMNLAL 607 (732)
Q Consensus 586 l~~ai~~~GG~~~va~~lg~~~ 607 (732)
...+|..+|.|.++|++||.+.
T Consensus 12 ~f~~v~e~gs~s~AA~~L~isq 33 (305)
T CHL00180 12 ILKAIATEGSFKKAAESLYISQ 33 (305)
T ss_pred HHHHHHHcCCHHHHHHHhcCCC
Confidence 5679999999999999999994
No 191
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=20.61 E-value=85 Score=26.46 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=17.8
Q ss_pred HHHHHhcCHHHHHHHhccccc
Q 004764 658 RALEKWGGLHEVSRLLSLKLR 678 (732)
Q Consensus 658 ~a~~~~Gg~~~va~~lg~~~~ 678 (732)
.||..+||..++|+.||....
T Consensus 4 ~aI~~~G~~~~lAkalGVs~~ 24 (60)
T PF14549_consen 4 DAIKYFGGQSKLAKALGVSPQ 24 (60)
T ss_dssp HHHHHHSSHHHHHHHHTS-HH
T ss_pred HHHHHHCCHHHHHHHHCCCHH
Confidence 589999999999999997654
No 192
>PRK13348 chromosome replication initiation inhibitor protein; Provisional
Probab=20.55 E-value=66 Score=33.74 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.0
Q ss_pred cHHHHHHHhcCHHHHHHHcCch
Q 004764 585 DVEKAITRMGGFRRMASLMNLA 606 (732)
Q Consensus 585 dl~~ai~~~GG~~~va~~lg~~ 606 (732)
-...+|.++|+|.++|++||.+
T Consensus 8 ~~f~~v~~~gs~t~AA~~L~iS 29 (294)
T PRK13348 8 EALAAVVETGSFERAARRLHVT 29 (294)
T ss_pred HHHHHHHHcCCHHHHHHHhCCC
Confidence 4577999999999999999998
Done!