Query 004765
Match_columns 732
No_of_seqs 447 out of 3340
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 12:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 1E-150 2E-155 1290.4 66.7 683 35-729 51-737 (758)
2 PLN03244 alpha-amylase; Provis 100.0 1E-127 2E-132 1074.5 57.2 629 48-725 71-869 (872)
3 PLN02960 alpha-amylase 100.0 4E-123 1E-127 1058.7 60.6 676 30-725 52-894 (897)
4 KOG0470 1,4-alpha-glucan branc 100.0 1E-121 2E-126 1012.2 45.9 686 28-725 43-755 (757)
5 PRK12568 glycogen branching en 100.0 5E-109 1E-113 945.5 54.6 593 69-723 105-729 (730)
6 PRK14706 glycogen branching en 100.0 3E-106 7E-111 926.5 55.7 577 83-724 19-623 (639)
7 PRK14705 glycogen branching en 100.0 1E-106 3E-111 965.1 53.5 589 69-723 601-1223(1224)
8 PRK05402 glycogen branching en 100.0 4E-98 9E-103 879.9 57.2 610 42-724 84-725 (726)
9 PRK12313 glycogen branching en 100.0 3.8E-98 8E-103 870.8 56.2 584 81-725 17-630 (633)
10 TIGR01515 branching_enzym alph 100.0 3.7E-97 8E-102 856.8 54.0 576 82-721 8-613 (613)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 3.3E-98 7E-103 837.4 40.3 588 73-721 8-627 (628)
12 TIGR02104 pulA_typeI pullulana 100.0 3.5E-75 7.6E-80 674.2 45.3 511 90-680 11-601 (605)
13 TIGR02402 trehalose_TreZ malto 100.0 3.4E-73 7.4E-78 646.9 43.2 479 100-654 1-536 (542)
14 TIGR02102 pullulan_Gpos pullul 100.0 2.8E-71 6E-76 658.8 53.3 643 7-724 248-1006(1111)
15 TIGR02100 glgX_debranch glycog 100.0 3.1E-70 6.7E-75 634.3 51.2 555 89-722 5-688 (688)
16 PRK03705 glycogen debranching 100.0 2.4E-69 5.2E-74 622.2 47.5 550 88-722 9-657 (658)
17 TIGR02103 pullul_strch alpha-1 100.0 5.1E-65 1.1E-69 595.0 46.6 547 91-722 128-896 (898)
18 PLN02877 alpha-amylase/limit d 100.0 3.2E-62 7E-67 569.1 47.9 494 90-654 214-915 (970)
19 PRK14510 putative bifunctional 100.0 4.6E-62 1E-66 594.3 41.9 477 89-626 14-576 (1221)
20 PRK10785 maltodextrin glucosid 100.0 1.7E-59 3.7E-64 541.6 40.6 461 96-653 17-559 (598)
21 TIGR02456 treS_nterm trehalose 100.0 1.4E-58 3.1E-63 529.8 35.2 454 208-722 2-538 (539)
22 TIGR02403 trehalose_treC alpha 100.0 1.8E-57 3.8E-62 519.8 33.7 457 208-721 1-542 (543)
23 PRK10933 trehalose-6-phosphate 100.0 3.2E-57 7E-62 516.9 35.7 457 206-722 5-550 (551)
24 COG1523 PulA Type II secretory 100.0 2.8E-54 6E-59 491.6 38.3 552 88-723 17-692 (697)
25 PRK09505 malS alpha-amylase; R 100.0 4.6E-53 1E-57 486.8 32.4 370 204-652 182-681 (683)
26 PRK09441 cytoplasmic alpha-amy 100.0 2.5E-51 5.3E-56 464.5 31.6 376 229-721 19-479 (479)
27 PF00128 Alpha-amylase: Alpha 100.0 5.3E-46 1.1E-50 397.9 15.9 278 229-561 1-312 (316)
28 PLN00196 alpha-amylase; Provis 100.0 6.8E-44 1.5E-48 393.3 27.9 316 228-653 40-402 (428)
29 PLN02361 alpha-amylase 100.0 1.5E-41 3.2E-46 370.3 31.0 315 230-651 27-376 (401)
30 TIGR03852 sucrose_gtfA sucrose 100.0 1.4E-40 3E-45 366.2 18.2 374 225-654 13-462 (470)
31 TIGR02455 TreS_stutzeri trehal 100.0 3.2E-38 7E-43 349.7 34.7 468 210-726 50-685 (688)
32 PRK13840 sucrose phosphorylase 100.0 1.9E-39 4.2E-44 359.3 24.7 375 229-653 17-467 (495)
33 COG0366 AmyA Glycosidases [Car 100.0 4.4E-39 9.6E-44 368.4 26.0 399 212-654 1-485 (505)
34 PLN02784 alpha-amylase 100.0 5.9E-37 1.3E-41 350.0 27.1 327 211-650 498-865 (894)
35 KOG0471 Alpha-amylase [Carbohy 100.0 1.7E-35 3.6E-40 336.8 25.8 171 206-379 12-220 (545)
36 TIGR02401 trehalose_TreY malto 100.0 1.1E-31 2.4E-36 310.2 28.4 171 229-427 13-282 (825)
37 PRK14511 maltooligosyl trehalo 99.9 5.6E-26 1.2E-30 264.1 27.4 82 229-311 17-98 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 1.1E-21 2.3E-26 199.9 26.1 381 230-679 38-465 (504)
39 smart00642 Aamy Alpha-amylase 99.9 4.2E-23 9.1E-28 200.5 8.9 93 216-309 1-97 (166)
40 cd02854 Glycogen_branching_enz 99.9 7.8E-22 1.7E-26 174.3 10.4 96 96-191 3-99 (99)
41 PF14872 GHL5: Hypothetical gl 99.8 1.3E-19 2.8E-24 198.0 21.8 307 89-434 26-439 (811)
42 PRK14507 putative bifunctional 99.7 3E-17 6.5E-22 202.3 8.9 92 211-309 743-834 (1693)
43 TIGR01531 glyc_debranch glycog 99.7 4.6E-15 9.9E-20 177.8 25.7 82 228-311 128-214 (1464)
44 COG3280 TreY Maltooligosyl tre 99.6 4.9E-15 1.1E-19 165.3 12.6 80 230-310 17-96 (889)
45 PF02922 CBM_48: Carbohydrate- 99.5 6E-15 1.3E-19 127.3 6.4 79 90-174 1-85 (85)
46 cd02855 Glycogen_branching_enz 99.5 1.1E-13 2.4E-18 124.5 10.5 94 83-183 2-101 (106)
47 cd02860 Pullulanase_N_term Pul 99.5 1.5E-13 3.2E-18 122.5 9.1 92 91-194 1-97 (100)
48 cd02856 Glycogen_debranching_e 99.4 1.4E-12 2.9E-17 116.9 9.1 82 90-179 1-92 (103)
49 PF02806 Alpha-amylase_C: Alph 99.4 7.9E-13 1.7E-17 116.6 6.8 89 628-723 1-94 (95)
50 cd02853 MTHase_N_term Maltooli 99.3 2.1E-11 4.6E-16 105.2 10.0 84 92-193 1-85 (85)
51 PRK05402 glycogen branching en 99.2 3.5E-11 7.5E-16 143.1 7.0 85 81-176 11-97 (726)
52 cd02852 Isoamylase_N_term Isoa 99.1 1.8E-10 4E-15 106.0 9.3 80 92-179 1-96 (119)
53 cd02861 E_set_proteins_like E 99.0 1.3E-09 2.9E-14 93.3 8.1 65 99-176 3-68 (82)
54 cd02858 Esterase_N_term Estera 98.9 3.5E-09 7.5E-14 91.3 8.4 66 98-176 6-72 (85)
55 PF02638 DUF187: Glycosyl hydr 98.7 1E-07 2.2E-12 102.3 11.8 190 230-426 17-227 (311)
56 cd02688 E_set E or "early" set 98.6 2.6E-07 5.6E-12 78.6 8.5 60 98-164 4-63 (83)
57 PF14701 hDGE_amylase: glucano 98.5 9.8E-08 2.1E-12 104.3 6.5 82 229-312 19-107 (423)
58 KOG3625 Alpha amylase [Carbohy 98.5 5.2E-06 1.1E-10 95.2 20.2 81 229-311 139-226 (1521)
59 PF11941 DUF3459: Domain of un 98.5 8.9E-07 1.9E-11 76.9 9.1 83 608-720 1-89 (89)
60 PRK14508 4-alpha-glucanotransf 98.3 1.6E-05 3.4E-10 90.4 18.2 187 282-499 198-401 (497)
61 PF14871 GHL6: Hypothetical gl 98.3 3.2E-06 6.9E-11 78.9 8.2 125 237-373 4-132 (132)
62 cd02859 AMPKbeta_GBD_like AMP- 98.2 4.3E-06 9.4E-11 71.0 6.8 53 100-162 4-56 (79)
63 PLN02950 4-alpha-glucanotransf 98.2 0.00012 2.6E-09 88.6 21.2 144 100-258 155-308 (909)
64 COG1649 Uncharacterized protei 98.0 1.9E-05 4.2E-10 86.3 10.0 180 230-425 62-269 (418)
65 PF02446 Glyco_hydro_77: 4-alp 98.0 1.6E-05 3.5E-10 90.9 8.8 196 227-436 13-342 (496)
66 PLN02635 disproportionating en 98.0 8.2E-05 1.8E-09 84.8 14.2 139 282-434 224-377 (538)
67 PF02324 Glyco_hydro_70: Glyco 97.9 2.1E-05 4.5E-10 88.7 7.3 98 210-308 563-673 (809)
68 PRK14510 putative bifunctional 97.9 0.00056 1.2E-08 85.8 19.7 275 282-617 932-1219(1221)
69 PF02065 Melibiase: Melibiase; 97.5 0.0012 2.5E-08 73.1 13.7 170 232-428 58-234 (394)
70 cd06593 GH31_xylosidase_YicI Y 97.4 0.0019 4E-08 69.6 13.5 173 230-426 22-205 (308)
71 cd06594 GH31_glucosidase_YihQ 97.4 0.00062 1.4E-08 73.5 8.9 137 230-375 21-166 (317)
72 cd06592 GH31_glucosidase_KIAA1 97.3 0.00088 1.9E-08 71.9 9.4 128 230-375 28-165 (303)
73 PRK14507 putative bifunctional 97.1 0.014 3E-07 74.5 18.7 187 282-499 386-585 (1693)
74 PF02324 Glyco_hydro_70: Glyco 97.1 0.003 6.4E-08 71.9 11.3 129 340-498 144-299 (809)
75 cd06597 GH31_transferase_CtsY 97.1 0.0028 6.1E-08 69.1 11.0 94 283-377 86-189 (340)
76 TIGR00217 malQ 4-alpha-glucano 97.0 0.0091 2E-07 68.4 13.7 140 282-434 212-366 (513)
77 PF13200 DUF4015: Putative gly 96.8 0.011 2.5E-07 63.1 11.8 175 235-429 15-195 (316)
78 PRK11052 malQ 4-alpha-glucanot 96.8 0.025 5.4E-07 67.0 15.4 187 282-499 355-554 (695)
79 PF13199 Glyco_hydro_66: Glyco 96.7 0.0068 1.5E-07 69.6 10.2 132 230-376 116-269 (559)
80 PF00150 Cellulase: Cellulase 96.6 0.025 5.4E-07 59.4 13.0 142 234-428 22-172 (281)
81 cd06600 GH31_MGAM-like This fa 96.5 0.0041 8.8E-08 67.3 6.1 131 230-375 22-160 (317)
82 PRK14582 pgaB outer membrane N 96.5 0.021 4.6E-07 67.0 12.0 133 230-375 332-468 (671)
83 cd06591 GH31_xylosidase_XylS X 96.4 0.0059 1.3E-07 66.1 6.5 131 230-375 22-159 (319)
84 cd06599 GH31_glycosidase_Aec37 96.2 0.0075 1.6E-07 65.2 6.2 130 233-375 30-168 (317)
85 PRK10426 alpha-glucosidase; Pr 95.9 0.067 1.4E-06 63.2 12.7 135 232-377 221-365 (635)
86 cd06602 GH31_MGAM_SI_GAA This 95.9 0.017 3.8E-07 63.0 7.3 133 231-375 23-165 (339)
87 PF01055 Glyco_hydro_31: Glyco 95.6 0.018 3.8E-07 65.3 5.9 131 231-376 42-181 (441)
88 TIGR01370 cysRS possible cyste 95.5 0.069 1.5E-06 57.3 9.6 83 332-426 127-211 (315)
89 COG1640 MalQ 4-alpha-glucanotr 95.5 0.11 2.4E-06 59.0 11.6 87 282-377 210-308 (520)
90 PF11852 DUF3372: Domain of un 95.4 0.022 4.8E-07 55.0 5.0 53 603-655 41-116 (168)
91 smart00632 Aamy_C Aamy_C domai 95.4 0.095 2.1E-06 44.6 8.3 69 634-721 6-78 (81)
92 PRK10658 putative alpha-glucos 95.0 0.033 7.2E-07 66.0 6.0 124 237-376 287-419 (665)
93 cd06604 GH31_glucosidase_II_Ma 94.9 0.048 1E-06 59.6 6.3 129 230-375 22-159 (339)
94 cd02875 GH18_chitobiase Chitob 94.5 0.16 3.6E-06 55.8 9.5 85 285-422 67-152 (358)
95 cd06598 GH31_transferase_CtsZ 94.5 0.07 1.5E-06 57.7 6.5 134 230-375 22-164 (317)
96 cd06562 GH20_HexA_HexB-like Be 94.4 0.64 1.4E-05 51.0 13.9 178 231-432 17-215 (348)
97 cd06542 GH18_EndoS-like Endo-b 93.8 0.26 5.6E-06 51.4 8.8 64 280-373 49-112 (255)
98 cd06564 GH20_DspB_LnbB-like Gl 93.6 0.88 1.9E-05 49.4 12.9 166 230-430 15-204 (326)
99 cd06595 GH31_xylosidase_XylS-l 93.6 0.14 3.1E-06 54.7 6.6 129 230-374 23-158 (292)
100 PF07745 Glyco_hydro_53: Glyco 93.5 0.45 9.8E-06 51.5 10.1 147 237-427 28-175 (332)
101 COG1501 Alpha-glucosidases, fa 93.4 0.32 7E-06 58.5 9.8 88 285-377 324-417 (772)
102 cd02742 GH20_hexosaminidase Be 92.9 0.79 1.7E-05 49.2 10.9 167 230-430 14-195 (303)
103 cd06603 GH31_GANC_GANAB_alpha 92.8 0.18 3.9E-06 55.1 6.0 129 230-374 22-161 (339)
104 cd06601 GH31_lyase_GLase GLase 92.8 0.28 6.1E-06 53.3 7.4 109 230-375 22-133 (332)
105 cd06568 GH20_SpHex_like A subg 92.5 2.1 4.5E-05 46.6 13.5 168 230-429 16-198 (329)
106 cd06545 GH18_3CO4_chitinase Th 91.6 1.8 3.8E-05 45.2 11.5 87 281-418 45-131 (253)
107 PLN02763 hydrolase, hydrolyzin 91.2 0.48 1E-05 58.0 7.5 129 230-375 199-336 (978)
108 cd05808 CBM20_alpha_amylase Al 90.8 0.64 1.4E-05 40.5 6.2 58 100-163 3-66 (95)
109 cd06563 GH20_chitobiase-like T 90.8 4.2 9.2E-05 44.7 14.0 131 280-429 84-228 (357)
110 cd06565 GH20_GcnA-like Glycosy 90.5 2.5 5.5E-05 45.3 11.6 168 230-430 15-189 (301)
111 COG3280 TreY Maltooligosyl tre 90.3 0.19 4.2E-06 58.3 2.9 44 608-652 775-826 (889)
112 PF14488 DUF4434: Domain of un 90.2 0.5 1.1E-05 46.1 5.3 65 237-305 24-88 (166)
113 KOG1065 Maltase glucoamylase a 89.8 1.3 2.8E-05 52.6 9.1 132 229-375 308-448 (805)
114 PF14883 GHL13: Hypothetical g 88.7 7.4 0.00016 41.0 12.8 167 236-424 20-189 (294)
115 PF01120 Alpha_L_fucos: Alpha- 88.4 1.6 3.4E-05 47.9 8.3 148 237-426 95-243 (346)
116 cd06569 GH20_Sm-chitobiase-lik 88.1 1.8 4E-05 49.0 8.7 84 280-363 95-192 (445)
117 PRK12568 glycogen branching en 88.0 1.1 2.4E-05 53.4 7.1 80 83-175 22-103 (730)
118 PF02449 Glyco_hydro_42: Beta- 87.8 0.99 2.1E-05 50.0 6.3 118 235-373 12-136 (374)
119 smart00812 Alpha_L_fucos Alpha 87.6 4.9 0.00011 44.6 11.5 143 237-426 85-232 (384)
120 cd06547 GH85_ENGase Endo-beta- 87.5 1.3 2.9E-05 48.2 6.8 95 286-425 50-145 (339)
121 cd05816 CBM20_DPE2_repeat2 Dis 87.3 2.3 5E-05 37.5 7.1 60 100-164 2-68 (99)
122 PF00686 CBM_20: Starch bindin 87.2 1.2 2.5E-05 39.1 5.2 60 100-165 4-73 (96)
123 PF10438 Cyc-maltodext_C: Cycl 86.5 1 2.2E-05 38.0 4.1 21 634-654 7-31 (78)
124 cd06570 GH20_chitobiase-like_1 86.2 3.7 8E-05 44.3 9.3 121 231-364 17-146 (311)
125 PF08533 Glyco_hydro_42C: Beta 86.1 2.2 4.7E-05 33.7 5.7 47 644-722 12-58 (58)
126 cd05814 CBM20_Prei4 Prei4, N-t 84.7 2.2 4.8E-05 39.1 5.9 56 100-161 3-67 (120)
127 cd02874 GH18_CFLE_spore_hydrol 84.0 7.6 0.00016 41.8 10.6 89 284-418 47-136 (313)
128 PF00728 Glyco_hydro_20: Glyco 83.9 1.2 2.6E-05 48.7 4.4 181 230-433 16-223 (351)
129 COG3867 Arabinogalactan endo-1 83.8 9.6 0.00021 40.1 10.4 153 233-425 63-219 (403)
130 COG3589 Uncharacterized conser 83.7 1.3 2.9E-05 47.1 4.3 53 237-305 20-72 (360)
131 cd02871 GH18_chitinase_D-like 83.5 4.6 0.0001 43.6 8.6 61 280-373 58-118 (312)
132 cd06589 GH31 The enzymes of gl 82.2 2 4.4E-05 45.1 5.2 93 229-375 21-116 (265)
133 PRK14705 glycogen branching en 81.4 3 6.6E-05 52.6 7.0 81 84-174 516-598 (1224)
134 PF10566 Glyco_hydro_97: Glyco 79.8 13 0.00029 39.1 10.1 99 230-375 30-129 (273)
135 cd05809 CBM20_beta_amylase Bet 77.6 7.2 0.00016 34.4 6.4 60 100-165 5-73 (99)
136 PLN03236 4-alpha-glucanotransf 76.0 6.2 0.00013 47.2 7.1 90 282-377 274-372 (745)
137 COG2342 Predicted extracellula 75.1 18 0.00039 37.8 9.2 156 237-426 34-191 (300)
138 PLN02316 synthase/transferase 75.1 26 0.00056 43.8 12.2 48 210-258 586-633 (1036)
139 PLN03236 4-alpha-glucanotransf 72.3 4.6 9.9E-05 48.3 4.8 59 226-285 77-139 (745)
140 cd02857 CD_pullulan_degrading_ 72.1 12 0.00025 33.5 6.5 64 89-163 11-82 (116)
141 PF01301 Glyco_hydro_35: Glyco 72.0 2.6 5.6E-05 45.6 2.5 57 236-304 27-85 (319)
142 cd05817 CBM20_DSP Dual-specifi 71.6 11 0.00023 33.4 5.9 57 100-162 2-64 (100)
143 PF14701 hDGE_amylase: glucano 71.6 7.3 0.00016 43.5 5.9 54 340-421 364-422 (423)
144 cd00598 GH18_chitinase-like Th 70.9 58 0.0013 32.3 12.0 64 280-373 47-112 (210)
145 PF13204 DUF4038: Protein of u 70.8 6.8 0.00015 41.8 5.3 66 237-306 34-110 (289)
146 PF05913 DUF871: Bacterial pro 70.7 6.9 0.00015 43.0 5.4 58 230-305 12-70 (357)
147 cd06543 GH18_PF-ChiA-like PF-C 70.2 64 0.0014 34.5 12.5 93 240-373 19-112 (294)
148 cd05467 CBM20 The family 20 ca 70.0 16 0.00035 31.5 6.7 60 100-164 2-69 (96)
149 COG1523 PulA Type II secretory 69.7 10 0.00022 45.2 6.9 83 99-181 68-155 (697)
150 PRK11052 malQ 4-alpha-glucanot 66.3 8.2 0.00018 46.2 5.2 64 225-289 158-224 (695)
151 PLN03059 beta-galactosidase; P 66.1 5.4 0.00012 48.1 3.6 55 237-301 63-117 (840)
152 TIGR03849 arch_ComA phosphosul 65.9 9.5 0.00021 39.2 4.9 46 236-301 74-119 (237)
153 PF03198 Glyco_hydro_72: Gluca 64.7 6.3 0.00014 42.1 3.4 49 237-308 57-105 (314)
154 PF00724 Oxidored_FMN: NADH:fl 64.5 28 0.0006 38.0 8.7 24 281-304 79-102 (341)
155 cd02931 ER_like_FMN Enoate red 64.2 1.3E+02 0.0027 33.5 13.8 25 281-307 82-106 (382)
156 cd06548 GH18_chitinase The GH1 64.1 22 0.00047 38.4 7.7 29 345-373 105-133 (322)
157 cd04733 OYE_like_2_FMN Old yel 62.3 88 0.0019 34.1 12.0 127 281-419 81-213 (338)
158 PRK10605 N-ethylmaleimide redu 61.0 1.5E+02 0.0034 32.6 13.7 131 281-420 78-224 (362)
159 cd06546 GH18_CTS3_chitinase GH 61.0 42 0.00091 35.1 8.9 66 278-373 55-120 (256)
160 cd02932 OYE_YqiM_FMN Old yello 60.9 1.4E+02 0.0031 32.4 13.4 28 281-310 76-103 (336)
161 cd05813 CBM20_genethonin_1 Gen 60.7 23 0.0005 30.8 5.8 56 100-162 3-64 (95)
162 PF03644 Glyco_hydro_85: Glyco 60.7 15 0.00033 39.5 5.6 94 286-425 46-140 (311)
163 COG2730 BglC Endoglucanase [Ca 60.4 10 0.00022 42.6 4.3 59 235-303 75-137 (407)
164 PF03423 CBM_25: Carbohydrate 59.1 21 0.00045 30.8 5.1 34 108-141 17-55 (87)
165 cd04747 OYE_like_5_FMN Old yel 56.7 1.1E+02 0.0024 33.8 11.5 132 281-422 77-212 (361)
166 PRK13523 NADPH dehydrogenase N 56.6 1.4E+02 0.0031 32.5 12.4 123 281-418 80-205 (337)
167 cd02929 TMADH_HD_FMN Trimethyl 56.4 1.3E+02 0.0027 33.4 12.1 128 281-419 82-214 (370)
168 cd02872 GH18_chitolectin_chito 56.2 28 0.0006 38.2 6.9 63 345-423 92-155 (362)
169 cd02803 OYE_like_FMN_family Ol 55.7 58 0.0013 35.1 9.2 127 281-419 76-205 (327)
170 cd02879 GH18_plant_chitinase_c 55.6 33 0.00071 36.7 7.1 53 345-417 88-141 (299)
171 cd02876 GH18_SI-CLP Stabilin-1 55.3 29 0.00062 37.4 6.7 59 345-419 88-147 (318)
172 smart00636 Glyco_18 Glycosyl h 55.3 34 0.00073 37.0 7.3 55 345-418 87-142 (334)
173 TIGR03356 BGL beta-galactosida 53.5 24 0.00052 39.9 5.9 94 229-365 51-150 (427)
174 PTZ00445 p36-lilke protein; Pr 52.4 21 0.00046 36.1 4.6 65 230-300 26-96 (219)
175 PF09260 DUF1966: Domain of un 52.3 32 0.0007 29.9 5.2 69 635-723 5-82 (91)
176 PF02903 Alpha-amylase_N: Alph 51.9 22 0.00049 32.3 4.5 63 96-166 19-92 (120)
177 PF02679 ComA: (2R)-phospho-3- 51.4 17 0.00037 37.6 3.9 47 236-302 87-133 (244)
178 cd02930 DCR_FMN 2,4-dienoyl-Co 50.8 2E+02 0.0043 31.5 12.4 29 280-310 75-103 (353)
179 PLN02411 12-oxophytodienoate r 50.5 2E+02 0.0044 32.1 12.5 131 281-419 86-229 (391)
180 PF00704 Glyco_hydro_18: Glyco 50.2 43 0.00093 36.1 7.1 64 346-426 96-164 (343)
181 cd06549 GH18_trifunctional GH1 49.9 39 0.00084 36.1 6.6 54 344-418 83-137 (298)
182 PF13380 CoA_binding_2: CoA bi 49.4 16 0.00034 33.3 3.0 39 236-300 69-107 (116)
183 cd04735 OYE_like_4_FMN Old yel 48.8 1.7E+02 0.0038 32.0 11.6 129 281-419 77-208 (353)
184 cd05820 CBM20_novamyl Novamyl 47.0 76 0.0017 28.1 7.0 60 100-165 5-75 (103)
185 KOG0496 Beta-galactosidase [Ca 46.6 20 0.00044 41.8 3.9 59 236-304 52-110 (649)
186 cd05811 CBM20_glucoamylase Glu 45.7 66 0.0014 28.4 6.4 60 100-165 9-78 (106)
187 cd04734 OYE_like_3_FMN Old yel 45.1 2.3E+02 0.005 30.9 11.8 28 281-310 76-103 (343)
188 PF01212 Beta_elim_lyase: Beta 45.0 19 0.00041 38.4 3.2 24 280-303 143-166 (290)
189 KOG2499 Beta-N-acetylhexosamin 44.3 1E+02 0.0022 34.9 8.7 75 280-362 248-323 (542)
190 PRK15447 putative protease; Pr 44.2 54 0.0012 35.2 6.5 52 229-300 15-66 (301)
191 COG1902 NemA NADH:flavin oxido 44.2 2.2E+02 0.0048 31.4 11.4 127 281-420 82-214 (363)
192 cd02878 GH18_zymocin_alpha Zym 43.8 71 0.0015 34.9 7.6 28 346-373 88-115 (345)
193 PF09154 DUF1939: Domain of un 43.6 59 0.0013 25.7 5.0 56 646-721 1-57 (57)
194 cd02877 GH18_hevamine_XipI_cla 42.7 4.4E+02 0.0095 27.9 13.1 59 240-301 18-78 (280)
195 cd02933 OYE_like_FMN Old yello 42.5 3.2E+02 0.007 29.8 12.4 28 281-310 76-103 (338)
196 PLN03231 putative alpha-galact 42.1 5.1E+02 0.011 28.6 14.7 142 231-374 20-185 (357)
197 PRK05692 hydroxymethylglutaryl 41.5 2.9E+02 0.0062 29.4 11.5 59 282-375 120-179 (287)
198 cd05815 CBM20_DPE2_repeat1 Dis 40.7 91 0.002 27.3 6.5 59 100-164 2-69 (101)
199 PRK13210 putative L-xylulose 5 40.3 31 0.00066 36.2 3.9 50 237-299 20-69 (284)
200 PF07071 DUF1341: Protein of u 40.1 39 0.00085 33.7 4.2 42 237-298 139-180 (218)
201 PRK08255 salicylyl-CoA 5-hydro 40.1 3.2E+02 0.007 33.4 13.1 133 281-420 474-616 (765)
202 COG1306 Uncharacterized conser 39.5 68 0.0015 34.0 6.0 130 233-375 77-219 (400)
203 PRK10076 pyruvate formate lyas 38.1 51 0.0011 33.5 4.9 59 237-300 149-211 (213)
204 COG0041 PurE Phosphoribosylcar 36.5 39 0.00085 32.2 3.4 52 230-303 14-65 (162)
205 PRK08207 coproporphyrinogen II 33.9 44 0.00094 38.5 4.1 62 235-306 268-330 (488)
206 PRK09852 cryptic 6-phospho-bet 33.7 1.9E+02 0.0041 33.2 9.1 101 228-365 67-169 (474)
207 COG0520 csdA Selenocysteine ly 32.9 40 0.00086 37.8 3.5 37 268-304 165-201 (405)
208 PRK01060 endonuclease IV; Prov 32.9 54 0.0012 34.4 4.4 48 237-298 16-63 (281)
209 TIGR00539 hemN_rel putative ox 32.4 49 0.0011 36.4 4.1 65 236-310 100-165 (360)
210 TIGR00433 bioB biotin syntheta 32.3 61 0.0013 34.3 4.7 60 236-306 123-182 (296)
211 cd06544 GH18_narbonin Narbonin 32.0 1.2E+02 0.0027 31.6 6.8 56 349-428 97-153 (253)
212 PRK05628 coproporphyrinogen II 31.9 42 0.00091 37.1 3.5 64 236-309 108-172 (375)
213 PRK09856 fructoselysine 3-epim 31.6 60 0.0013 33.8 4.5 48 237-299 17-64 (275)
214 PRK12928 lipoyl synthase; Prov 31.4 80 0.0017 33.7 5.3 61 230-301 217-277 (290)
215 TIGR01210 conserved hypothetic 31.3 51 0.0011 35.6 3.9 60 236-305 117-178 (313)
216 PRK07094 biotin synthase; Prov 30.8 46 0.001 35.9 3.5 61 236-306 129-189 (323)
217 KOG0259 Tyrosine aminotransfer 30.8 56 0.0012 35.9 3.9 31 280-310 217-247 (447)
218 PF15640 Tox-MPTase4: Metallop 30.5 48 0.001 30.4 2.8 26 276-301 16-41 (132)
219 PF14587 Glyco_hydr_30_2: O-Gl 30.4 3E+02 0.0065 30.6 9.5 118 284-429 106-228 (384)
220 PLN02899 alpha-galactosidase 28.8 1E+03 0.022 28.3 13.7 143 231-374 50-217 (633)
221 PRK05939 hypothetical protein; 28.6 68 0.0015 35.8 4.5 28 277-304 143-170 (397)
222 PRK05967 cystathionine beta-ly 28.6 69 0.0015 35.8 4.4 28 278-305 162-189 (395)
223 PRK14581 hmsF outer membrane N 28.3 4E+02 0.0087 32.0 10.8 124 237-373 338-466 (672)
224 PRK08208 coproporphyrinogen II 28.1 58 0.0013 36.8 3.8 65 236-310 141-206 (430)
225 KOG0256 1-aminocyclopropane-1- 27.9 59 0.0013 36.0 3.5 29 280-308 244-272 (471)
226 cd05818 CBM20_water_dikinase P 27.8 1.6E+02 0.0034 25.5 5.6 50 108-165 14-66 (92)
227 cd05810 CBM20_alpha_MTH Glucan 27.6 1.2E+02 0.0026 26.6 4.9 50 109-164 15-68 (97)
228 PRK09028 cystathionine beta-ly 27.0 76 0.0017 35.4 4.4 28 278-305 159-186 (394)
229 PRK09331 Sep-tRNA:Cys-tRNA syn 26.7 59 0.0013 36.0 3.5 30 276-305 169-198 (387)
230 cd05806 CBM20_laforin Laforin 26.5 3E+02 0.0066 24.9 7.4 42 100-141 3-58 (112)
231 TIGR00542 hxl6Piso_put hexulos 26.4 68 0.0015 33.6 3.8 50 237-299 20-69 (279)
232 TIGR03581 EF_0839 conserved hy 26.4 67 0.0015 32.5 3.3 41 237-297 139-179 (236)
233 TIGR01324 cysta_beta_ly_B cyst 26.2 81 0.0018 34.9 4.4 28 278-305 148-175 (377)
234 PRK06256 biotin synthase; Vali 26.1 60 0.0013 35.2 3.4 60 236-306 152-211 (336)
235 cd05014 SIS_Kpsf KpsF-like pro 26.1 1.3E+02 0.0028 27.1 5.1 62 238-300 18-79 (128)
236 cd00609 AAT_like Aspartate ami 25.7 78 0.0017 33.7 4.2 51 241-307 127-177 (350)
237 PRK13347 coproporphyrinogen II 24.8 79 0.0017 36.0 4.1 63 236-308 152-215 (453)
238 PRK07324 transaminase; Validat 24.4 1.1E+02 0.0025 33.5 5.3 29 279-307 170-198 (373)
239 COG0134 TrpC Indole-3-glycerol 24.4 81 0.0018 32.9 3.7 22 281-302 142-163 (254)
240 cd00615 Orn_deC_like Ornithine 24.4 51 0.0011 34.9 2.4 27 278-304 166-192 (294)
241 cd06454 KBL_like KBL_like; thi 23.8 65 0.0014 34.6 3.1 26 279-304 146-171 (349)
242 PRK07050 cystathionine beta-ly 23.6 95 0.0021 34.6 4.4 29 278-306 163-191 (394)
243 cd06452 SepCysS Sep-tRNA:Cys-t 23.5 62 0.0014 35.3 2.9 30 276-305 150-179 (361)
244 PRK05968 hypothetical protein; 23.4 94 0.002 34.5 4.3 31 274-304 156-186 (389)
245 COG4152 ABC-type uncharacteriz 23.3 1.5E+02 0.0032 31.0 5.2 56 351-431 105-160 (300)
246 PRK09249 coproporphyrinogen II 23.2 76 0.0016 36.1 3.6 65 236-310 151-216 (453)
247 cd00287 ribokinase_pfkB_like r 23.1 1.1E+02 0.0025 29.5 4.5 49 241-304 45-93 (196)
248 cd05807 CBM20_CGTase CGTase, C 22.8 2.9E+02 0.0062 24.1 6.5 60 100-165 5-75 (101)
249 PLN02509 cystathionine beta-ly 22.7 99 0.0021 35.4 4.4 31 274-304 226-256 (464)
250 PF11806 DUF3327: Domain of un 22.7 1.8E+02 0.0039 26.7 5.3 55 100-163 4-69 (122)
251 PF01261 AP_endonuc_2: Xylose 22.7 39 0.00084 33.2 1.0 44 240-300 2-45 (213)
252 PF09196 DUF1953: Domain of un 22.6 1.2E+02 0.0026 23.7 3.3 39 635-676 8-47 (66)
253 TIGR02539 SepCysS Sep-tRNA:Cys 22.6 76 0.0016 34.8 3.4 31 276-306 157-187 (370)
254 PRK15452 putative protease; Pr 22.5 1.2E+02 0.0026 34.5 4.9 54 229-300 11-64 (443)
255 PRK07379 coproporphyrinogen II 22.3 74 0.0016 35.6 3.2 65 236-310 115-180 (400)
256 TIGR03539 DapC_actino succinyl 21.9 1E+02 0.0022 33.5 4.3 35 274-308 154-188 (357)
257 PRK05904 coproporphyrinogen II 21.9 78 0.0017 34.8 3.2 63 236-308 103-166 (353)
258 cd00614 CGS_like CGS_like: Cys 21.8 73 0.0016 35.0 3.0 27 278-304 138-164 (369)
259 PF01791 DeoC: DeoC/LacD famil 21.7 75 0.0016 32.6 2.9 55 238-305 81-135 (236)
260 COG1640 MalQ 4-alpha-glucanotr 21.7 1.2E+02 0.0026 35.1 4.6 77 208-287 14-92 (520)
261 PTZ00376 aspartate aminotransf 21.5 1.3E+02 0.0028 33.5 4.9 62 230-309 162-223 (404)
262 PRK05660 HemN family oxidoredu 21.4 1E+02 0.0022 34.1 4.1 64 237-310 108-172 (378)
263 PRK08446 coproporphyrinogen II 21.2 1.1E+02 0.0025 33.4 4.4 63 236-308 98-161 (350)
264 PRK07777 aminotransferase; Val 21.2 1.2E+02 0.0027 33.3 4.7 29 280-308 177-205 (387)
265 PLN00175 aminotransferase fami 21.1 1.3E+02 0.0029 33.6 5.0 29 280-308 205-233 (413)
266 PF07894 DUF1669: Protein of u 20.9 81 0.0018 33.4 2.9 24 279-303 134-157 (284)
267 PRK08599 coproporphyrinogen II 20.8 97 0.0021 34.2 3.7 64 236-309 100-164 (377)
268 PRK05799 coproporphyrinogen II 20.7 87 0.0019 34.6 3.3 64 236-309 99-163 (374)
269 COG1891 Uncharacterized protei 20.6 45 0.00098 32.5 0.9 23 279-301 164-186 (235)
270 PRK08960 hypothetical protein; 20.5 1.3E+02 0.0029 33.0 4.8 30 279-308 182-211 (387)
271 TIGR01814 kynureninase kynuren 20.4 77 0.0017 35.3 2.9 30 276-305 182-211 (406)
272 cd01494 AAT_I Aspartate aminot 20.2 80 0.0017 29.3 2.6 26 283-308 110-135 (170)
273 PRK05957 aspartate aminotransf 20.2 1.4E+02 0.0031 32.9 4.9 30 279-308 177-206 (389)
274 PRK09058 coproporphyrinogen II 20.0 96 0.0021 35.3 3.5 65 236-310 163-228 (449)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=1e-150 Score=1290.36 Aligned_cols=683 Identities=78% Similarity=1.354 Sum_probs=648.8
Q ss_pred CCCCCCCCCCcceecCCCCccchHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcCCcEEEEEeCCCcCeEEE
Q 004765 35 RSIPPPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASL 114 (732)
Q Consensus 35 ~~~~~~~~~~~~~~~dp~l~~~~~~~~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~~G~~~~~~gv~f~~WAP~A~~V~L 114 (732)
...+++.++.++++.||||+||+.+|++|+.+|.+++++|++.+|||++|+++|++||+|+.++|++||||||+|++|+|
T Consensus 51 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~L 130 (758)
T PLN02447 51 ASPPPPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAAL 130 (758)
T ss_pred ccCCCCCCcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEE
Confidence 36677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC-cccccCcccceeccCCCC--CCCccEEe
Q 004765 115 IGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQAPGE--IPYNGIYY 191 (732)
Q Consensus 115 ~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~ 191 (732)
+||||+|++..++|++.++|+|+++||+ .+|.++++||++|||+|.+.+| ..+++|||++++++.|++ ..+++++|
T Consensus 131 vGdFN~W~~~~~~M~~~~~GvWe~~ip~-~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~ 209 (758)
T PLN02447 131 IGDFNNWNPNAHWMTKNEFGVWEIFLPD-ADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYW 209 (758)
T ss_pred EEecCCCCCCccCceeCCCCEEEEEECC-ccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEe
Confidence 9999999999999999999999999999 8888999999999999998866 458999999999999876 36899999
Q ss_pred CCCccccccccCCCCCCCCCceEEEEecCCCCCCCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccc
Q 004765 192 DPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNF 271 (732)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~ 271 (732)
||+..++|.|+++++..+.+++|||+|||+|+.++++|+|+++++++|||||+|||||||||||++++++++|||++++|
T Consensus 210 dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~ 289 (758)
T PLN02447 210 DPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNF 289 (758)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccC
Confidence 99755679999988877889999999999999888899999999889999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHH
Q 004765 272 FAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLR 351 (732)
Q Consensus 272 ~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~ 351 (732)
|+|+|+|||++|||+||++||++||+||||||+||++.++.+++..|||+.+.||+.+..++++.|++.+|||++++|++
T Consensus 290 fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~ 369 (758)
T PLN02447 290 FAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLR 369 (758)
T ss_pred cccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHH
Confidence 99999999999999999999999999999999999999887788999999888999888888999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCC
Q 004765 352 FLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSG 431 (732)
Q Consensus 352 ~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~ 431 (732)
||+++++||++||||||||||+|++|+|.|||++.+|+++|++|+|+++|.+++.||+++|+.|++.+|++++|||++++
T Consensus 370 fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~ 449 (758)
T PLN02447 370 FLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSG 449 (758)
T ss_pred HHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccCCcccCcccchhhHHHHHHHHhc-CCchhhhhhhhhhhcccccccceeecccccccccccccchhhhcCC
Q 004765 432 MPTFCIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMD 510 (732)
Q Consensus 432 ~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~ 510 (732)
+|.+|+|+..||+||||+|+|+|+++|+++++. .++.|.++.+++++.++++.|++|.|++||||+++|++++++|+|+
T Consensus 450 ~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d 529 (758)
T PLN02447 450 MPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMD 529 (758)
T ss_pred CCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcc
Confidence 999999999999999999999999999999996 5789999999999999899999999999999999999999999999
Q ss_pred hhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCcccCc
Q 004765 511 KDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRR 590 (732)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~ 590 (732)
++||++|+++.+.++.++|+++++||++++||++||.++|||||+|||+++|+|||+ .+|++|+.++|+
T Consensus 530 ~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr-----------~~n~ws~~~~~~ 598 (758)
T PLN02447 530 KEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPR-----------EGNGWSYDKCRR 598 (758)
T ss_pred hhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcc-----------cccccCcccccC
Confidence 999999999999999999999999999999999999989999999999999999999 499999999998
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEeCcEEEEEEcCCCCcccceEEcccCCce
Q 004765 591 RFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGK 670 (732)
Q Consensus 591 ~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R~~llvv~Nf~~~~~~~~~~l~~~~~g~ 670 (732)
+|++.+.+.++++.|.+|+|+|++|++++++|..+++|+.+.+++++||||+|..+||||||+|++++.+|+|++|.+|+
T Consensus 599 ~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~ 678 (758)
T PLN02447 599 RWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGK 678 (758)
T ss_pred CccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCe
Confidence 88887666678999999999999999999999999999999999999999999999999999987789999999999999
Q ss_pred EEEEEeCCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEEecCCcCC
Q 004765 671 YKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADEEEQP 729 (732)
Q Consensus 671 ~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~~~~~~~~ 729 (732)
|++|||||+.+|||+++++....+.+.+.++++++++++|+|||++++||++.+..+++
T Consensus 679 y~~ilnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~~~~ 737 (758)
T PLN02447 679 YKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDEDDEP 737 (758)
T ss_pred EEEEECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCccccc
Confidence 99999999999999999876666778788899999999999999999999997655443
No 2
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.1e-127 Score=1074.50 Aligned_cols=629 Identities=40% Similarity=0.798 Sum_probs=584.8
Q ss_pred ecCCC---------CccchHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcCC-cEEEEEeCCCcCeEEEEee
Q 004765 48 EIDPN---------LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGD 117 (732)
Q Consensus 48 ~~dp~---------l~~~~~~~~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~~G~~~~~~-gv~f~~WAP~A~~V~L~gd 117 (732)
.+||. .+.|+++++.||+..++++.+|.+++++|+.||++|+.||+|++.+ +++|++|||+|...+|+||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gd 150 (872)
T PLN03244 71 GIDPVGFLTKLGIADKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGD 150 (872)
T ss_pred CcCchhHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeecc
Confidence 47887 6899999999999999999999999999999999999999999986 6999999999999999999
Q ss_pred cCCCCCcccc-----cccCCCCEEEEEeCCCC------------------------------------------------
Q 004765 118 FNNWNPNADI-----MTQNEFGVWEIFLPNNA------------------------------------------------ 144 (732)
Q Consensus 118 fn~w~~~~~~-----m~~~~~GvW~i~ip~~~------------------------------------------------ 144 (732)
||+|+++++. |.++++|+|+|.|+...
T Consensus 151 fn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (872)
T PLN03244 151 FNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRF 230 (872)
T ss_pred ccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhH
Confidence 9999998875 77999999999994321
Q ss_pred -----------------------------------------------------------C--C-----------------
Q 004765 145 -----------------------------------------------------------D--G----------------- 146 (732)
Q Consensus 145 -----------------------------------------------------------~--g----------------- 146 (732)
+ |
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (872)
T PLN03244 231 IKNRFEVAAKLYEQIFGPNGPETEEELEDIPDAETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREK 310 (872)
T ss_pred HHhHHHHHHHHHHHhhCCCCccchhhhccCcchHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHH
Confidence 0 1
Q ss_pred -------------------------CCCCCCCCEEEEEeeCCCCcccccCcccceeccCCCCCCCccEEeCCCccccccc
Q 004765 147 -------------------------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVF 201 (732)
Q Consensus 147 -------------------------~~~i~hg~~Yk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (732)
.++|+||++||+++.+++|..+|+|+|++++++.+.+..|.+++|+|+..++|.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~i~H~s~~k~~~~~~~g~~~RiPaw~~~~~~~~~~~~~~~~~w~P~~~~~y~~ 390 (872)
T PLN03244 311 FRAKEPPIAYWLESRKGRKAWLKKYIPAIPHGSKYRLYFNTPDGPLERIPAWATYVLPDDDGKQAFAIHWEPPPEAAHKW 390 (872)
T ss_pred hhccCCChhhHHHhhcccCceeecccCCCCCCCeEEEEEEcCCCCcccCCCCeeeEEecCCCCceeeeEeCCCcccCCcc
Confidence 2259999999999999888789999999999999988899999999998788999
Q ss_pred cCCCCCCCCCceEEEEecCCCCCCCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCH
Q 004765 202 QHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTP 281 (732)
Q Consensus 202 ~~~~~~~~~~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~ 281 (732)
++++|.+|.+++|||+|||++++++++|||++|+++ +++||||+|+|||+
T Consensus 391 k~~~p~~p~~lrIYE~HvGms~~e~kv~ty~eF~~~------------------------------vt~fFApssRYGTP 440 (872)
T PLN03244 391 KNMKPKVPESLRIYECHVGISGSEPKISSFEEFTEK------------------------------VTNFFAASSRYGTP 440 (872)
T ss_pred CCCCCCCCCCceEEEEEeeecCCCCCcccHHHHhhc------------------------------cCcccccCcccCCH
Confidence 999999999999999999999999999999999952 78999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004765 282 DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWL 361 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl 361 (732)
+|||+||++||++||+||||||+||++.+...+++.|+|++..||+.+.++.+..|+++.|||++++|++||+++++||+
T Consensus 441 eDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWl 520 (872)
T PLN03244 441 DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWI 520 (872)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999878999999998889998888889999999999999999999999999999
Q ss_pred HHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceecccc
Q 004765 362 EEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD 441 (732)
Q Consensus 362 ~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~ 441 (732)
+||||||||||+|++|+|.|||+ .+|++++.++++...|.+++.||+++|+.+++.+|++++|||+++++|.+|+|...
T Consensus 521 eEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~ 599 (872)
T PLN03244 521 TEYQIDGFQFHSLASMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQ 599 (872)
T ss_pred HHhCcCcceeecchhheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCC
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccchhhHHHHHHHHhc-CCchhhhhhhhhhh-cccccccceeecccccccccccccchhhhcCChhHHHhhhc
Q 004765 442 GGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTM-TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMAL 519 (732)
Q Consensus 442 gg~gfd~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~-~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~ 519 (732)
||+||||+|+|+|+++|+++++. .+..|.++.+++++ .++++.+++|+|.||||++.+|++++++++++++||..|.
T Consensus 600 GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~- 678 (872)
T PLN03244 600 GGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLG- 678 (872)
T ss_pred CCCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccc-
Confidence 99999999999999999999996 45669999999987 6788889999999999999999999999999999998873
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccc
Q 004765 520 DRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADY 599 (732)
Q Consensus 520 ~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~ 599 (732)
.++++.|+++++||++++++++||.|+|||||+|||+++|.++|+ .||++|+.++|++|++.+.
T Consensus 679 ---~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr-----------~gN~~s~~~arrdW~Lld~-- 742 (872)
T PLN03244 679 ---GKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPM-----------PSNNFSFSLANRCWDLLEN-- 742 (872)
T ss_pred ---cchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchheeccc-----------cCCCccccccccCccccCC--
Confidence 456788999999999999999999999999999999999999998 5999999999887777553
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEeCcEEEEEEcCCCCcccceEEcccCCceEEEEEeCCC
Q 004765 600 LRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDD 679 (732)
Q Consensus 600 ~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~ 679 (732)
..++.|.+|+|+|++|++++++|..+++|+.+.+++++||||.|..+||||||+|++++.+|+|+||.+|+|++|||||+
T Consensus 743 ~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~ 822 (872)
T PLN03244 743 EVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDE 822 (872)
T ss_pred hhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCCh
Confidence 45899999999999999999999999999999999999999999999999999997789999999999999999999999
Q ss_pred CCCCCccccCCCcceee--cccccCCCCeEEEEEecCcEEEEEEEecC
Q 004765 680 PLFGGYKRLDHNAEYFS--LEGWYDDQPHSFLVYAPSRTAVVYALADE 725 (732)
Q Consensus 680 ~~~gg~~~~~~~~~~~~--~~~~~~~~~~~~~l~lp~~s~~vl~~~~~ 725 (732)
..|||+++++... +.+ ...+++++++++.|+|||+|++||++.+.
T Consensus 823 ~~FGG~g~~~~~~-~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~~ 869 (872)
T PLN03244 823 TKYGGQGIIEEDH-YLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSRI 869 (872)
T ss_pred hhhCCCCccCCCc-eeecccccccCCCCceEEEEeCCCEEEEEEEeeE
Confidence 9999999987654 444 44568999999999999999999998653
No 3
>PLN02960 alpha-amylase
Probab=100.00 E-value=4.4e-123 Score=1058.65 Aligned_cols=676 Identities=42% Similarity=0.788 Sum_probs=593.7
Q ss_pred hccCCCCCCCCCCCCcceecCCC---------CccchHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcCC-c
Q 004765 30 REVGPRSIPPPGAGQNIYEIDPN---------LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-G 99 (732)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~dp~---------l~~~~~~~~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~~G~~~~~~-g 99 (732)
.++++++..+..+..+ .+||. .+.|++++++||+.+++++.+|.+++++|..||++|+.||+|++.+ |
T Consensus 52 ~~~~~~~~~~~~~~~~--~~~~vgf~~~~~~~~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~ 129 (897)
T PLN02960 52 KQKKKRQQEPGSDAEA--GVDPVGFLTRLGISDRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHR 129 (897)
T ss_pred hhhhhcccCCCCCccc--CcchhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccC
Confidence 3445555555555554 36776 6899999999999999999999999999999999999999999875 8
Q ss_pred EEEEEeCCCcCeEEEEeecCCCCCcccccc-----cCCCCEEEEEeCCCC------------------------------
Q 004765 100 ITYREWAPGAKSASLIGDFNNWNPNADIMT-----QNEFGVWEIFLPNNA------------------------------ 144 (732)
Q Consensus 100 v~f~~WAP~A~~V~L~gdfn~w~~~~~~m~-----~~~~GvW~i~ip~~~------------------------------ 144 (732)
|.|+||||+|+.++|+||||+|+++++.|. ++++|+|+|+|+...
T Consensus 130 ~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (897)
T PLN02960 130 VDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDDYDKGDSGIDIE 209 (897)
T ss_pred eEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccccccCCCCCCHH
Confidence 999999999999999999999999999765 789999999994321
Q ss_pred -----------------------------------------------------------------------------CC-
Q 004765 145 -----------------------------------------------------------------------------DG- 146 (732)
Q Consensus 145 -----------------------------------------------------------------------------~g- 146 (732)
+|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (897)
T PLN02960 210 ELFQKMNDEYWEPGEDRFIKNRLEVPAKLYEQMFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQ 289 (897)
T ss_pred HHHHHhhhhhcCCcchhhhhccchhHHHHHHHhhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCc
Confidence 00
Q ss_pred -----------------------------------------CCCCCCCCEEEEEeeCCCCcccccCcccceeccCCCCCC
Q 004765 147 -----------------------------------------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIP 185 (732)
Q Consensus 147 -----------------------------------------~~~i~hg~~Yk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (732)
.+.++||++|+|+|++.+|..+++||||+++++.+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~gw~~~~ip~~~hG~~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~ 369 (897)
T PLN02960 290 PYDIFNVVTDPVWREKFLEKKPPLPYWEETRKGRKAWLKKYIPAIPHGSKYRVYFNTPDGPLERVPAWATYVLPDPDGKQ 369 (897)
T ss_pred ccccceeccCHHHHHHHhccCCCCcceeeeeecCCcEEEEEccCCCCCCEEEEEEEeCCCceEECCCcceeEeecCCCcc
Confidence 124799999999999877777789999999877666555
Q ss_pred CccEEeCCCccccccccCCCCCCCCCceEEEEecCCCCCCCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCC
Q 004765 186 YNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFG 265 (732)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~G 265 (732)
...++|+|+....|.|++.+|..+++++|||+|||+|+.++++|||++++++.|||||+|||||||||||++++.+.+||
T Consensus 370 ~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swG 449 (897)
T PLN02960 370 WYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVG 449 (897)
T ss_pred ceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCC
Confidence 66788898644579998877777789999999999999888899999999777999999999999999999999999999
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCC
Q 004765 266 YHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYG 345 (732)
Q Consensus 266 Y~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~ 345 (732)
|++++||+|+++|||++|||+||++||++||+||||+|+||++.++..++..|+|+...||+.+..+.+..|+++.|||+
T Consensus 450 Y~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~ 529 (897)
T PLN02960 450 YKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYG 529 (897)
T ss_pred CCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999876788899998878998887788889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEE
Q 004765 346 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSI 425 (732)
Q Consensus 346 ~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~i 425 (732)
+++||+||+++++||++||||||||||+|++|+|.|+|. ..++|.|.++++...|.+++.||+++|+.+++..|++++|
T Consensus 530 ~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilI 608 (897)
T PLN02960 530 DHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITI 608 (897)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEE
Confidence 999999999999999999999999999999999999887 4677777777777789999999999999999999999999
Q ss_pred EecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhc-CCchhhhhhhhhhhc-ccccccceeecccccccccccccc
Q 004765 426 GEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTMT-NRRWLEKCVAYAESHDQALVGDKT 503 (732)
Q Consensus 426 aE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~~esHD~~r~g~~~ 503 (732)
||+.+++|.+|+|...||+||||+|+|+++++++++++. ..+.|.+..+..++. ++...+++|+|+|||||+.+|+++
T Consensus 609 AEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrs 688 (897)
T PLN02960 609 AEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKS 688 (897)
T ss_pred EECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCccc
Confidence 999999999999999999999999999999999999986 346777778888887 677888999999999999999999
Q ss_pred hhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCCCC
Q 004765 504 IAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNF 583 (732)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~ 583 (732)
+...+.+.+++..++.. +.+.|++++++++++++++++|.++|+|||+|||+++|.++|+ ++|+.
T Consensus 689 l~~rL~g~~~~k~~~~~----~~~lRa~al~~~~rllt~~~~Pg~pLlFMG~EFGh~e~~~~Pd-----------P~n~~ 753 (897)
T PLN02960 689 FAEILLGKNKESSPAVK----ELLLRGVSLHKMIRLITFTLGGSAYLNFMGNEFGHPERVEFPR-----------ASNNF 753 (897)
T ss_pred HHHHCCCchhhhhcccC----hhhhhhhhHHHHHHHHHHHhCCCCCEeeCccccCChhhhhCcC-----------CCCcc
Confidence 99888887777665542 3456778889998777666554346789999999988777776 56777
Q ss_pred CCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEeCcEEEEEEcCCCCcccceEE
Q 004765 584 SYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRV 663 (732)
Q Consensus 584 s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R~~llvv~Nf~~~~~~~~~~l 663 (732)
++..++ ++|...+...++.+++|+|+||+||+++|+|+.++.|+.+.+.+++||||.|+.+|||+||+|..++..|+|
T Consensus 754 tf~~s~--LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV~NFsp~~~~~~Y~v 831 (897)
T PLN02960 754 SFSLAN--RRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEYEV 831 (897)
T ss_pred cccccc--CCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeCCeEEEEeCCCCCcCcCceE
Confidence 776665 666666666799999999999999999999999999998888889999999999999999998667889999
Q ss_pred cccCCceEEEEEeCCCCCCCCccccCCCcce-eecccccCCCCeEEEEEecCcEEEEEEEecC
Q 004765 664 GCLKPGKYKIVLDSDDPLFGGYKRLDHNAEY-FSLEGWYDDQPHSFLVYAPSRTAVVYALADE 725 (732)
Q Consensus 664 ~~~~~g~~~~vl~sd~~~~gg~~~~~~~~~~-~~~~~~~~~~~~~~~l~lp~~s~~vl~~~~~ 725 (732)
++|.+|.|++|||||+..|||.++++..... .+...++++++++|+|+|||++++||++.++
T Consensus 832 gvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g~~~si~i~LPp~sa~v~k~~~~ 894 (897)
T PLN02960 832 GVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGLRNCLELTLPSRSAQVYKLARI 894 (897)
T ss_pred CCCCCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCCCCceEEEEeCCCEEEEEEEeee
Confidence 9999999999999999999999987654333 3556678999999999999999999998754
No 4
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.7e-122 Score=1012.20 Aligned_cols=686 Identities=58% Similarity=0.980 Sum_probs=647.2
Q ss_pred hhhccCCCCCCCCCCCCcceecCCCCccchHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcCCc-EEEEEeC
Q 004765 28 VKREVGPRSIPPPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITYREWA 106 (732)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~~G~~~~~~g-v~f~~WA 106 (732)
..++.+....| +.+..+++++||||.||..++++|++.+.+.+..|.+.+++|..|+++|+.||+|+++++ +.|++||
T Consensus 43 ~~~e~~~~~~p-~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewa 121 (757)
T KOG0470|consen 43 SALEAKSGDLP-ADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWA 121 (757)
T ss_pred HHhhhhcCCCC-hHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceeeeeec
Confidence 45566666666 778999999999999999999999999999999999999999999999999999999888 9999999
Q ss_pred CCcCeEEEEeecCCCCCcccccc-cCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC-cccccCcccceeccCCCCC
Q 004765 107 PGAKSASLIGDFNNWNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQAPGEI 184 (732)
Q Consensus 107 P~A~~V~L~gdfn~w~~~~~~m~-~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 184 (732)
|.|++|+++||||+|+.....+. |++.|+|++.+|...+|..+++|++.+++.+.+++| ...++|||++++.+.+...
T Consensus 122 P~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~ 201 (757)
T KOG0470|consen 122 PLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQEGEGP 201 (757)
T ss_pred ccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCCCccc
Confidence 99999999999999999888877 889999999999998999999999999999999998 5689999999999998888
Q ss_pred CCccEEeCCCccccccccCCCCCCCC-CceEEEEecCCCC-CCCCCCc---HHhHHHhhccccccCCccEEEECCcccC-
Q 004765 185 PYNGIYYDPPEEEKYVFQHPQPKKPK-SLRIYEAHVGMSS-TEPIINT---YANFRDDVLPRIKRLGYNAVQIMAVQEH- 258 (732)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IYE~hv~~~~-~~~~~g~---~~~~~~~~L~ylk~LGv~~I~L~Pi~e~- 258 (732)
++..++|+|++...|.|+.++|+.|+ +++|||+|||.|| .++++-+ |++|++..||+||+||+||||||||+||
T Consensus 202 q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~ 281 (757)
T KOG0470|consen 202 QYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFG 281 (757)
T ss_pred ceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhh
Confidence 89999999987778888889998887 9999999997665 4555555 9999965599999999999999999999
Q ss_pred CCCCCCCCccccccCCCCCCCCHH------HHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCC-CCccccCCC
Q 004765 259 SYYASFGYHVTNFFAPSSRCGTPD------DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD-GHYFHSGSR 331 (732)
Q Consensus 259 ~~~~~~GY~~~~~~a~d~~~Gt~~------d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~-~~yf~~~~~ 331 (732)
.++.+|||+|++||+|.+||||++ |||.||++||.+||-||||||+||++++..++++.|||++ .+||+.+++
T Consensus 282 ~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~~~~r 361 (757)
T KOG0470|consen 282 HYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFHSGPR 361 (757)
T ss_pred hhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEEeCCc
Confidence 688899999999999999999999 9999999999999999999999999998889999999999 789999999
Q ss_pred CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcc---cChhHHHHH
Q 004765 332 GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA---TDVDAVVYL 408 (732)
Q Consensus 332 g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~---~~~~~~~~l 408 (732)
++|+.||++.|||++|+|+++|+++|+||++||+|||||||.+++|+|.+||...+|+|+|.+|+|.. .+.+++.++
T Consensus 362 ~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~l 441 (757)
T KOG0470|consen 362 GYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDALVYL 441 (757)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 889999999
Q ss_pred HHHHHhhhccCCCEEEEEecCCCCCCc-eeccccCCcccC--cccchhhHHHHHHHHhc-CCchhhhhhhhhhhcccccc
Q 004765 409 MLVNDMIHGLYPEAVSIGEDVSGMPTF-CIPVQDGGVGFD--YRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWL 484 (732)
Q Consensus 409 ~~~~~~v~~~~p~~~~iaE~~~~~p~~-~~~~~~gg~gfd--~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 484 (732)
+.+++.++...|++|++||+.+++|.+ |.|..+++.||| |+.+|...++|++.|+. .+++|.++.+...++|++++
T Consensus 442 mlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~ 521 (757)
T KOG0470|consen 442 MLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYP 521 (757)
T ss_pred HhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccccc
Confidence 999999999999999999999999999 999999999999 99999999999999998 78999999999999999999
Q ss_pred cceeecccccccccccc-cchhh-hcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCC
Q 004765 485 EKCVAYAESHDQALVGD-KTIAF-WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEW 562 (732)
Q Consensus 485 ~~~v~~~esHD~~r~g~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~ 562 (732)
+++++|+++||++.+|+ +|+++ |+|++.||+.|+..++.+++++|++++++|++++++++.|..+|+||||||||++|
T Consensus 522 e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~ 601 (757)
T KOG0470|consen 522 EKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEW 601 (757)
T ss_pred cceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccc
Confidence 99999999999999999 99999 99999999999999999999999999999999999998877788899999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCcccCc-ccCCCCcccccc-HHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEE
Q 004765 563 IDFPRGDQRLPNGQFVPGNNFSYDKCRR-RFDLGDADYLRY-RGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIV 640 (732)
Q Consensus 563 ~d~p~~d~~~~~~~~~~gn~~s~~~~r~-~~~w~~~~~~~~-~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vla 640 (732)
.|+|+ .+|+.|+.++|+ +++..+.+..++ +.+.+|.+.|+.|.+.+..++.+.+++...++.+.+++
T Consensus 602 ~d~~~-----------~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~ 670 (757)
T KOG0470|consen 602 LDFPR-----------YGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIV 670 (757)
T ss_pred cCCCc-----------ccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheee
Confidence 99998 599999999999 999999888888 78999999999999999999999999999999999999
Q ss_pred EEeCcEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEE
Q 004765 641 FERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVY 720 (732)
Q Consensus 641 f~R~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl 720 (732)
|+|+.+++|+||+++.++.+|+|++..+|+|+.||++|...+||+.+++.....++....+.+++.++.||+|+++++|+
T Consensus 671 fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~l~VY~~~~~a~vl 750 (757)
T KOG0470|consen 671 FERGPLLFVFNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVSLQVYIPSRTATVL 750 (757)
T ss_pred eccCCeEEEEEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeeeEEEEeccCcceEe
Confidence 99999999999999999999999999999999999999999999999988777777777889999999999999999999
Q ss_pred EEecC
Q 004765 721 ALADE 725 (732)
Q Consensus 721 ~~~~~ 725 (732)
.....
T Consensus 751 ~~~~~ 755 (757)
T KOG0470|consen 751 ALLDT 755 (757)
T ss_pred eeccc
Confidence 87653
No 5
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.9e-109 Score=945.46 Aligned_cols=593 Identities=24% Similarity=0.457 Sum_probs=514.0
Q ss_pred HHHHHHHhhcCChhhhhcccccCCcEEc----CCcEEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCC
Q 004765 69 QMCEDIDKYEGGLAAFSRGYEKFGFIRS----DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNA 144 (732)
Q Consensus 69 ~~~~~i~~~~g~l~~f~~~y~~~G~~~~----~~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~ 144 (732)
.++.+++.+..+.+.+.+.|+.||||.. .+||+|+||||+|++|+|+||||+|+...++|.+.++|+|+++||+.
T Consensus 105 ~~~~~~d~~~~~~g~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~- 183 (730)
T PRK12568 105 PTLDESLLLQIAAGDGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRV- 183 (730)
T ss_pred cCCCHHHHHHHhCCchhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCC-
Confidence 3456667777788889999999999974 46899999999999999999999999999999988999999999975
Q ss_pred CCCCCCCCCCEEEEEeeCCCCcc-cccCcccceeccCCCCCCCccEEeCCCccccccccCC-----C-C-CCCCCceEEE
Q 004765 145 DGSPPIPHGSRVKIHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----Q-P-KKPKSLRIYE 216 (732)
Q Consensus 145 ~g~~~i~hg~~Yk~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~IYE 216 (732)
.+|..|||+|.+.+|.. ...||||+.++.+|.+ +++++++. .|.|++. + + ...++++|||
T Consensus 184 ------~~G~~YKYeI~~~~G~~~~k~DPYA~~~e~~p~~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYE 251 (730)
T PRK12568 184 ------EAGARYKYAITAADGRVLLKADPVARQTELPPAT---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYE 251 (730)
T ss_pred ------CCCCEEEEEEEcCCCeEeecCCCcceEeecCCCC---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEE
Confidence 45779999999877754 5789999999888765 68887753 3666543 1 2 2458999999
Q ss_pred EecCCCCCC--CCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHc
Q 004765 217 AHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 294 (732)
Q Consensus 217 ~hv~~~~~~--~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~ 294 (732)
+|||+|+.. ...++|+++++++|||||+||||+||||||+++|...+|||++++||+|+|+|||++|||+||++||++
T Consensus 252 vHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~ 331 (730)
T PRK12568 252 VHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRA 331 (730)
T ss_pred EEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHC
Confidence 999999864 346899999977789999999999999999999998899999999999999999999999999999999
Q ss_pred CCEEEEEecccccCCCccccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 004765 295 GLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 373 (732)
Q Consensus 295 GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~-~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~ 373 (732)
||+||||+|+||++.+. .++..|+|+. .|.+.++ .+.+..|++..|||++|+|++||+++++||+++|||||||+|+
T Consensus 332 Gi~VIlD~V~nH~~~d~-~~l~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DA 409 (730)
T PRK12568 332 GIGVILDWVSAHFPDDA-HGLAQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDA 409 (730)
T ss_pred CCEEEEEeccccCCccc-cccccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcC
Confidence 99999999999999875 5788899874 4555544 3667889988999999999999999999999999999999999
Q ss_pred cccccccccCccccccCCc-ccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccCcccch
Q 004765 374 VTSMMYTHHGLQVAFTGNY-SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQM 452 (732)
Q Consensus 374 ~~~m~~~~~g~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~ 452 (732)
+++|+|.++++.. |.| .+.+|+.+|.++++||+++|+.|++.+|++++|||+++.+|.++++...+|+|||++|+|
T Consensus 410 va~mly~d~~r~~---g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~ 486 (730)
T PRK12568 410 VASMLYRDYGRAE---GEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNM 486 (730)
T ss_pred HhHhhhhcccccc---ccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCC
Confidence 9999999988765 333 245688899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCC--chhhhhhhhhhhcccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhH
Q 004765 453 AIADKWIELLKKRD--EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRG 530 (732)
Q Consensus 453 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (732)
+||++++++++..+ +.+.+..+.+++. +.+.|++| ++.|||++.+|++++.. . |.++. .+.
T Consensus 487 gwm~d~l~y~~~dp~~r~~~h~~ltf~~~-y~~~e~fv-lp~SHDEvvhgk~sl~~-k--------mpGd~------~~k 549 (730)
T PRK12568 487 GWMHDTLHYMQRDPAERAHHHSQLTFGLV-YAFSERFV-LPLSHDEVVHGTGGLLG-Q--------MPGDD------WRR 549 (730)
T ss_pred hhHHHHHHHHhhCchhhhhhhhhhhhhhh-hhhhccEe-ccCCCcccccCchhhhh-c--------CCCCH------HHH
Confidence 99999999999744 5677778888776 47888887 89999999999887642 2 33331 245
Q ss_pred HHHHHHHHHHHHhcCCccccccccccccCC-CCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHH
Q 004765 531 IALHKMIRLVTMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFD 609 (732)
Q Consensus 531 ~~~~kla~~l~~t~pG~p~l~y~G~E~G~~-~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~ 609 (732)
.+.+|++.++|||+||.| |+|||+|||+. +|.+ ..+++|...+++.++.+.+|+
T Consensus 550 ~a~lR~~~~~~~~~PGkk-LlFmG~Efgq~~ew~~------------------------~~~ldW~ll~~~~h~~~~~~~ 604 (730)
T PRK12568 550 FANLRAYLALMWAHPGDK-LLFMGAEFGQWADWNH------------------------DQSLDWHLLDGARHRGMQQLV 604 (730)
T ss_pred HHHHHHHHHHHHhCCCcc-eeeCchhhCCcccccC------------------------CCCccccccCChhHHHHHHHH
Confidence 677888999999999996 66999999994 7754 246899988888899999999
Q ss_pred HHHHHHHHHhCCCC------CCcEEEecccCCCcEEEEEe--C-----cEEEEEEcCCCCcccceEEcccCCceEEEEEe
Q 004765 610 RAMQHLEEKYGFMT------SEHQYVSRKDEGDRVIVFER--G-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLD 676 (732)
Q Consensus 610 r~L~~LR~~~~~l~------~g~~~i~~~~~~~~vlaf~R--~-----~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~ 676 (732)
|+||+||+++|+|. .|++|+.+.+.+++|+||.| + .+|||+||+| ..+.+|+|++|.+|.|+++||
T Consensus 605 ~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~-~~~~~Y~ig~p~~G~~~eilN 683 (730)
T PRK12568 605 GDLNAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTP-QPHHDYRVGVPRAGGWREILN 683 (730)
T ss_pred HHHHHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCC-CCccCeEECCCCCCeEEEEEc
Confidence 99999999999983 67999999999999999999 1 2999999997 678999999999999999999
Q ss_pred CCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEEe
Q 004765 677 SDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 723 (732)
Q Consensus 677 sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~~ 723 (732)
||+..|||++..+.. .+.+.+.+++++++|++|+|||++++||++.
T Consensus 684 sd~~~ygG~~~~n~~-~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 684 TDSAHYGGSNLGNSG-RLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred CchhhhCCCCcCCCC-ceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 999999999876644 3456677899999999999999999999975
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.2e-106 Score=926.54 Aligned_cols=577 Identities=27% Similarity=0.506 Sum_probs=489.2
Q ss_pred hhhcccccCCcEEcCC----cEEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEE
Q 004765 83 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 158 (732)
Q Consensus 83 ~f~~~y~~~G~~~~~~----gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~ 158 (732)
++...|+.||+|.... |++||||||+|++|+|+||||+|+...++|.+.+.|+|+++||+. .+|..|||
T Consensus 19 ~~~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~-------~~g~~Yky 91 (639)
T PRK14706 19 DLVRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGA-------RPGQRYKF 91 (639)
T ss_pred cccchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCC-------CCCCEEEE
Confidence 4578899999997643 799999999999999999999999888999998899999999964 46789999
Q ss_pred EeeCCCCc-ccccCcccceeccCCCCCCCccEEeCCCccccccccCCC------CCCCCCceEEEEecCCCCCC--CCCC
Q 004765 159 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ------PKKPKSLRIYEAHVGMSSTE--PIIN 229 (732)
Q Consensus 159 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~IYE~hv~~~~~~--~~~g 229 (732)
+|.+.+|. ..+.||||++++.+|.. .++++++ .|.|++.. +...++++|||+|||+|+.. +..|
T Consensus 92 ~I~~~~g~~~~~~DPYa~~~~~~~~~---~svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ 164 (639)
T PRK14706 92 RVTGAAGQTVDKMDPYGSFFEVRPNT---ASIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFL 164 (639)
T ss_pred EEECCCCCEEeccCcceEEEecCCCC---ceEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCcc
Confidence 99987654 46899999999888765 6888876 37887543 22346799999999999753 3468
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 309 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~ 309 (732)
+|+++++..++|||+|||||||||||+|+|..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++.
T Consensus 165 ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 165 NYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 99999955469999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCcccccc
Q 004765 310 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 389 (732)
Q Consensus 310 ~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~ 389 (732)
+. .++..|||+...++.....+.+..|++..||+++|+||+||+++++||++||||||||||+|++|+|.|++... |
T Consensus 245 ~~-~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-~- 321 (639)
T PRK14706 245 DE-SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-W- 321 (639)
T ss_pred ch-hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc-c-
Confidence 75 67888998764334444457788999999999999999999999999999999999999999999999888642 3
Q ss_pred CCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhcCC--c
Q 004765 390 GNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--E 467 (732)
Q Consensus 390 ~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~~--~ 467 (732)
..+++|+++|.+++.||+++|+.|++.+|++++|||+++++|.++++... |+|||++|+|.|+++++++++... +
T Consensus 322 --~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r 398 (639)
T PRK14706 322 --VPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWR 398 (639)
T ss_pred --cccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccCchhh
Confidence 46778999999999999999999999999999999999999999999875 999999999999999999887532 1
Q ss_pred hhhhhhhhhhhcccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCc
Q 004765 468 DWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGE 547 (732)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~ 547 (732)
.+....+...+. +++.++.| |++|||+++++++++.. .|+ ++. ....+..|++.++|||+||+
T Consensus 399 ~~~~~~lt~~~~-y~~~e~~i-l~~SHDev~~~k~sl~~-k~~--------g~~------~~~~a~~r~~~~~~~t~PG~ 461 (639)
T PRK14706 399 KYHHHKLTFFNV-YRTSENYV-LAISHDEVVHLKKSMVM-KMP--------GDW------YTQRAQYRAFLAMMWTTPGK 461 (639)
T ss_pred hhchhccchhhh-hhccccEe-cCCCCccccCCccchHh-HcC--------CCH------HHHHHHHHHHHHHHHhCCCC
Confidence 222222222221 45566666 99999999998877542 222 221 13356788889999999999
Q ss_pred cccccccccccCC-CCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCC---
Q 004765 548 AYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT--- 623 (732)
Q Consensus 548 p~l~y~G~E~G~~-~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~--- 623 (732)
|+| |||+|||+. +|. ++++++|...+...++.|++|+|+||+||+++|+|.
T Consensus 462 pLi-FmG~EfG~~~ew~------------------------~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd 516 (639)
T PRK14706 462 KLL-FMGQEFAQGTEWN------------------------HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGD 516 (639)
T ss_pred cEE-EeccccCCCCCCC------------------------cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCC
Confidence 866 999999983 432 456789988766667789999999999999999994
Q ss_pred ---CCcEEEecccCCCcEEEEEeC------cEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCCCCccccCCCcce
Q 004765 624 ---SEHQYVSRKDEGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEY 694 (732)
Q Consensus 624 ---~g~~~i~~~~~~~~vlaf~R~------~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~gg~~~~~~~~~~ 694 (732)
.+++|+.+.+.+++|+||.|. .+|||+||+| ..+.+|+|++|.+|+|++|||||+..|||+++.+. .+
T Consensus 517 ~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~-~~~~~y~ig~p~~g~~~~i~nsd~~~~gG~g~~n~--~~ 593 (639)
T PRK14706 517 KREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP-VYREQYRIGVPQGGEYRVLLSTDDGEYGGFGTQQP--DL 593 (639)
T ss_pred CCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC-CCcCCeEECCCCCCeEEEEEcCCccccCCCCCCCC--ce
Confidence 558889888888899999992 2999999997 67899999999999999999999999999998764 35
Q ss_pred eecccccCCCCeEEEEEecCcEEEEEEEec
Q 004765 695 FSLEGWYDDQPHSFLVYAPSRTAVVYALAD 724 (732)
Q Consensus 695 ~~~~~~~~~~~~~~~l~lp~~s~~vl~~~~ 724 (732)
.+...++++++++|.|+|||++++||++.+
T Consensus 594 ~~~~~~~~g~~~si~i~lp~~~~~~~~~~~ 623 (639)
T PRK14706 594 MASQEGWHGQPHSLSLNLPPSSVLILEFVG 623 (639)
T ss_pred eccccccCCCccEEEEEeCCcEEEEEEECC
Confidence 566677999999999999999999999863
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-106 Score=965.10 Aligned_cols=589 Identities=28% Similarity=0.495 Sum_probs=511.7
Q ss_pred HHHHHHHhhcCChhhhhcccccCCcEEc--------CCcEEEEEeCCCcCeEEEEeecCCCCCccccccc-CCCCEEEEE
Q 004765 69 QMCEDIDKYEGGLAAFSRGYEKFGFIRS--------DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIF 139 (732)
Q Consensus 69 ~~~~~i~~~~g~l~~f~~~y~~~G~~~~--------~~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~-~~~GvW~i~ 139 (732)
.++.+++.+.++.+.+.+.|+.||+|.. .+|++|+||||+|++|+|+||||+|+...++|.+ .+.|+|+++
T Consensus 601 ~~~~~~d~~lf~~g~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~f 680 (1224)
T PRK14705 601 PTVGEVDLHLIGEGRHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELF 680 (1224)
T ss_pred CCCCHHHHHHHhCCchhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEE
Confidence 3456677778888899999999999972 3479999999999999999999999998999987 467999999
Q ss_pred eCCCCCCCCCCCCCCEEEEEeeCCCCcc-cccCcccceeccCCCCCCCccEEeCCCccccccccCC-----CC---CCCC
Q 004765 140 LPNNADGSPPIPHGSRVKIHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----QP---KKPK 210 (732)
Q Consensus 140 ip~~~~g~~~i~hg~~Yk~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~ 210 (732)
||+.. .|..|||+|.+.+|.. .+.|||+++++.+|.+ .|+++|+. |.|+++ +. ...+
T Consensus 681 ipg~~-------~G~~Yky~i~~~~g~~~~k~DPyA~~~e~~p~~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~ 746 (1224)
T PRK14705 681 IPGVV-------AGACYKFEILTKAGQWVEKADPLAFGTEVPPLT---ASRVVEAS----YAFKDAEWMSARAERDPHNS 746 (1224)
T ss_pred ECCCC-------CCCEEEEEEEcCCCcEEecCCccccccccCCCC---CeEEeCCC----CCcCChhhhhccccCCCCcC
Confidence 99754 4679999999877753 6789999999888765 68999873 666553 21 1247
Q ss_pred CceEEEEecCCCCCCCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHH
Q 004765 211 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDK 290 (732)
Q Consensus 211 ~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~ 290 (732)
+++|||+|||+|+.. ++|++++++.|||||+|||||||||||+|+|.++||||++++||+|+++|||++|||+||++
T Consensus 747 p~~IYEvHvgsf~~~---~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~ 823 (1224)
T PRK14705 747 PMSVYEVHLGSWRLG---LGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDS 823 (1224)
T ss_pred CcEEEEEEecccccC---CchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHH
Confidence 899999999999873 79999997668999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeE
Q 004765 291 AHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 369 (732)
Q Consensus 291 aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~-~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGf 369 (732)
||++||+||||+|+||++.+. +++..|||+. .|++.++ .+.+..|++..|||++++||+||+++++||++|||||||
T Consensus 824 ~H~~GI~VILD~V~nH~~~d~-~~l~~fdg~~-~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGf 901 (1224)
T PRK14705 824 LHQAGIGVLLDWVPAHFPKDS-WALAQFDGQP-LYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGL 901 (1224)
T ss_pred HHHCCCEEEEEeccccCCcch-hhhhhcCCCc-ccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcE
Confidence 999999999999999999885 7888999975 5666655 478899999999999999999999999999999999999
Q ss_pred EEcccccccccccCccccccCCc-ccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccCc
Q 004765 370 RFDGVTSMMYTHHGLQVAFTGNY-SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDY 448 (732)
Q Consensus 370 R~D~~~~m~~~~~g~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gg~gfd~ 448 (732)
|||+|++|+|.|+++..+ .| .+.+|+++|.++++||+++|+.|++.+|++++|||+++.+|.+++|...||+||||
T Consensus 902 R~Dav~~mly~Dysr~~g---~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~ 978 (1224)
T PRK14705 902 RVDAVASMLYLDYSREEG---QWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGL 978 (1224)
T ss_pred EEeehhhhhhcccccccc---cccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCc
Confidence 999999999999887653 33 56789999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhcCC--chhhhhhhhhhhcccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCcc
Q 004765 449 RLQMAIADKWIELLKKRD--EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPR 526 (732)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (732)
+|||+||+++++|++... +.|.+..+.+++. +.+.++++ +..|||++++|++++. ..|+++.+.
T Consensus 979 kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~-ya~~e~fv-l~~SHDevvhgk~sl~-~km~Gd~~~----------- 1044 (1224)
T PRK14705 979 KWNMGWMHDSLKYASEDPINRKWHHGTITFSLV-YAFTENFL-LPISHDEVVHGKGSML-RKMPGDRWQ----------- 1044 (1224)
T ss_pred EecchhhHHHHHHhhhCcchhhcccchHHHHHH-HHhhcCEe-cccccccccccchhHH-HhCCCcHHH-----------
Confidence 999999999999998643 4677778888776 45778776 7889999988887653 344444443
Q ss_pred chhHHHHHHHHHHHHHhcCCccccccccccccCC-CCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHH
Q 004765 527 IDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGM 605 (732)
Q Consensus 527 ~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~-~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l 605 (732)
..+.+|++.++++++||+| |+|||+|||+. +|.+ ..+++|...+++.++.+
T Consensus 1045 ---k~a~lR~~~a~~~~~PGk~-LlFMG~Efgq~~ew~~------------------------~~~LdW~ll~~~~h~~~ 1096 (1224)
T PRK14705 1045 ---QLANLRAFLAYQWAHPGKQ-LIFMGTEFGQEAEWSE------------------------QHGLDWFLADIPAHRGI 1096 (1224)
T ss_pred ---HHHHHHHHHHHHHhcCCcC-EEECccccCCCCCccc------------------------cccCCCcccCChhhHHH
Confidence 3456788899999999996 55999999995 6642 34689998887789999
Q ss_pred HHHHHHHHHHHHHhCCCC------CCcEEEecccCCCcEEEEEe-----CcEEEEEEcCCCCcccceEEcccCCceEEEE
Q 004765 606 QEFDRAMQHLEEKYGFMT------SEHQYVSRKDEGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIV 674 (732)
Q Consensus 606 ~~f~r~L~~LR~~~~~l~------~g~~~i~~~~~~~~vlaf~R-----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~v 674 (732)
..|+|+||+||+++|+|. .|++|+.+.+.+++|++|.| +.+|||+||+| ..+.+|+|++|.+|.|++|
T Consensus 1097 ~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp-~~~~~y~igvp~~G~y~ei 1175 (1224)
T PRK14705 1097 QLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG-GPHKGYTLGVPAAGAWTEV 1175 (1224)
T ss_pred HHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC-CCccCceECCCCCCeEEEE
Confidence 999999999999999984 46899999898999999999 24999999997 6888999999999999999
Q ss_pred EeCCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEEe
Q 004765 675 LDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 723 (732)
Q Consensus 675 l~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~~ 723 (732)
||||+..|||++..+... +.+...+++++++||+|+|||++++||++.
T Consensus 1176 lnsd~~~ygGsg~~n~~~-~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1176 LNTDHETYGGSGVLNPGS-LKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred EeCchhhcCCCCcCCCCc-eeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 999999999999877543 455667799999999999999999999875
No 8
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4e-98 Score=879.95 Aligned_cols=610 Identities=28% Similarity=0.500 Sum_probs=497.2
Q ss_pred CCCcceecCCCCccchHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcC----CcEEEEEeCCCcCeEEEEee
Q 004765 42 AGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGD 117 (732)
Q Consensus 42 ~~~~~~~~dp~l~~~~~~~~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~~G~~~~~----~gv~f~~WAP~A~~V~L~gd 117 (732)
++..+.+.|||-.+.. +. +.+.+...-+.+.+.|+.||+|... +||+||+|||+|++|+|+||
T Consensus 84 ~g~~~~k~DPyaf~~~--~~-----------~~~~~~~~~g~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gd 150 (726)
T PRK05402 84 GGGEQLIDDPYRFGPL--LG-----------ELDLYLFGEGTHLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGD 150 (726)
T ss_pred CCceeEeccccccCCC--CC-----------HHHHHHHhCCccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEE
Confidence 4455778899876541 11 0111223334688999999999874 68999999999999999999
Q ss_pred cCCCCCcccccccC-CCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCc-ccccCcccceeccCCCCCCCccEEeCCCc
Q 004765 118 FNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE 195 (732)
Q Consensus 118 fn~w~~~~~~m~~~-~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (732)
||+|+...++|++. +.|+|+++||+. ++|..|+|++...+|. ....|||++.+...|.+ .|+++|++
T Consensus 151 fn~w~~~~~~m~~~~~~Gvw~~~i~~~-------~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~---~s~v~d~~- 219 (726)
T PRK05402 151 FNGWDGRRHPMRLRGESGVWELFIPGL-------GEGELYKFEILTADGELLLKADPYAFAAEVRPAT---ASIVADLS- 219 (726)
T ss_pred cCCCCCccccceEcCCCCEEEEEeCCC-------CCCCEEEEEEeCCCCcEeecCCCceEEEecCCCC---cEEEeCCc-
Confidence 99999888999988 889999999964 4678999999977664 36899999999888765 68999984
Q ss_pred cccccccCCCC--------CCCCCceEEEEecCCCCC---CCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCC
Q 004765 196 EEKYVFQHPQP--------KKPKSLRIYEAHVGMSST---EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF 264 (732)
Q Consensus 196 ~~~~~~~~~~~--------~~~~~~~IYE~hv~~~~~---~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~ 264 (732)
.|.|+++.. ...++++|||+|||+|+. .++.|||++++++.|||||+||||+||||||++++...+|
T Consensus 220 --~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~ 297 (726)
T PRK05402 220 --QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSW 297 (726)
T ss_pred --cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC
Confidence 588875431 234789999999999985 3567999999954459999999999999999999988899
Q ss_pred CCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCC-CCCcccCCCCCCC
Q 004765 265 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFN 343 (732)
Q Consensus 265 GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~-~g~~~~w~~~~ln 343 (732)
||++++||+|+|+|||++|||+||++||++||+||||+|+||++.++ .++..|+|+. .|++.+. .+.+..|++..||
T Consensus 298 GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~n 375 (726)
T PRK05402 298 GYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDA-HGLARFDGTA-LYEHADPREGEHPDWGTLIFN 375 (726)
T ss_pred CCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cchhccCCCc-ceeccCCcCCccCCCCCcccc
Confidence 99999999999999999999999999999999999999999998875 5677888874 4555433 4667889999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEE
Q 004765 344 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 423 (732)
Q Consensus 344 ~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~ 423 (732)
+++|+||++|+++++||++||||||||||+|++|++.+++...+.. ..+.+++..+.++++||+++++.|++.+|+++
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~ 453 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGRENLEAIDFLRELNAVVHEEFPGAL 453 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCcCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 9999999999999999999999999999999999998887655321 23456677788899999999999999999999
Q ss_pred EEEecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhcCC--chhhhhhhhhhhcccccccceeecccccccccccc
Q 004765 424 SIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGD 501 (732)
Q Consensus 424 ~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~ 501 (732)
+|||+++.+|.++.+...+|+|||+.|++++++.++++++... ..+....+...+. ..+.++++ +++|||++++|+
T Consensus 454 liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~-l~~sHD~~~~g~ 531 (726)
T PRK05402 454 TIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLL-YAYSENFV-LPLSHDEVVHGK 531 (726)
T ss_pred EEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHh-Hhhhcccc-CCCCCceeeeCc
Confidence 9999999999999999999999999999999999888886432 2222233333322 23444443 889999999888
Q ss_pred cchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCC
Q 004765 502 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 581 (732)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn 581 (732)
+++... |.++ .....+.+|++.+++||+||+|.| |||+|+|+....+
T Consensus 532 ~~l~~~---------~~g~------~~~~~~~lrl~~~~~~t~pG~Pli-f~G~E~g~~~~~~----------------- 578 (726)
T PRK05402 532 GSLLGK---------MPGD------DWQKFANLRAYYGYMWAHPGKKLL-FMGGEFGQGREWN----------------- 578 (726)
T ss_pred ccHHhh---------CCCC------HHHHHHHHHHHHHHHHHCCCcCEe-eCchhcCCCCCCC-----------------
Confidence 775422 2111 112356788899999999999866 9999999974211
Q ss_pred CCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCC------CcEEEecccCCCcEEEEEeC------cEEEE
Q 004765 582 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS------EHQYVSRKDEGDRVIVFERG------NLVFV 649 (732)
Q Consensus 582 ~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~------g~~~i~~~~~~~~vlaf~R~------~llvv 649 (732)
.+++++|...+...++.+++|+|+|++||+++|+|+. ++.++...+.+++|+||.|. .+|||
T Consensus 579 ------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv 652 (726)
T PRK05402 579 ------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVV 652 (726)
T ss_pred ------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEE
Confidence 2468999876656778999999999999999999963 46777666667789999992 49999
Q ss_pred EEcCCCCcccceEEcccCCceEEEEEeCCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEEec
Q 004765 650 FNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 724 (732)
Q Consensus 650 ~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~~~ 724 (732)
+||++ ....+|+|++|.+|+|+++||||+..|||++.++.. .+.+...+++++++++.|+|||++++||++..
T Consensus 653 ~N~~~-~~~~~y~i~~p~~g~~~~ilnsd~~~~gg~~~~~~~-~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 653 CNFTP-VPRHDYRLGVPQAGRWREVLNTDAEHYGGSNVGNGG-GVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred EeCCC-CcccceEECCCCCCeEEEEEcCcchhhCCCCCCCCC-ceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 99996 566789999998999999999999999999977644 45566678999999999999999999999864
No 9
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.8e-98 Score=870.77 Aligned_cols=584 Identities=29% Similarity=0.533 Sum_probs=480.9
Q ss_pred hhhhhcccccCCcEEcCC----cEEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEE
Q 004765 81 LAAFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRV 156 (732)
Q Consensus 81 l~~f~~~y~~~G~~~~~~----gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Y 156 (732)
.+++.+.|+.||+|...+ ||+||+|||+|++|+|+||||+|+...++|.+...|+|++++|+. .+|..|
T Consensus 17 ~g~~~~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~-------~~g~~Y 89 (633)
T PRK12313 17 TGEHFRLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGA-------KEGQLY 89 (633)
T ss_pred CCCcccchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCC-------CCCCEE
Confidence 345678899999998776 899999999999999999999999888999998899999999964 357799
Q ss_pred EEEeeCCCCc-ccccCcccceeccCCCCCCCccEEeCCCccccccccCCC-----C---CCCCCceEEEEecCCCCCC--
Q 004765 157 KIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ-----P---KKPKSLRIYEAHVGMSSTE-- 225 (732)
Q Consensus 157 k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~IYE~hv~~~~~~-- 225 (732)
+|++...+|. .++.|||++.+...+.. .|+++||+ .|.|++.. + ...++++|||+|||+|+.+
T Consensus 90 ~y~v~~~~g~~~~~~DPya~~~~~~~~~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~ 163 (633)
T PRK12313 90 KYHISRQDGYQVEKIDPFAFYFEARPGT---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNED 163 (633)
T ss_pred EEEEECCCCeEEecCCCceEEEecCCCC---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCC
Confidence 9999776664 47899999998877654 68999985 57887643 1 1237799999999999764
Q ss_pred CCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 226 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 226 ~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
++.|||++++++.|||||+||||+||||||+++|..++|||++++||+|+|+|||++|||+||++||++||+||||+|+|
T Consensus 164 ~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 164 GRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 56799999995446999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCcc
Q 004765 306 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQ 385 (732)
Q Consensus 306 H~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~ 385 (732)
|++.++ .++..|+++...++.....+.+..|++.+||++||+||++|+++++||++||||||||||+|++|++.+++..
T Consensus 244 H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~ 322 (633)
T PRK12313 244 HFPKDD-DGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEE 322 (633)
T ss_pred CCCCCc-ccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccc
Confidence 999875 5567788765322333334566789999999999999999999999999999999999999999998877722
Q ss_pred ccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhcC
Q 004765 386 VAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR 465 (732)
Q Consensus 386 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~ 465 (732)
..|.+ +..++..+.++++||+++++.|++.+|++++|||+++.+|.++.+...+|+|||++|++.+++.++.+++..
T Consensus 323 ~~~~~---~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~ 399 (633)
T PRK12313 323 GEWTP---NKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEED 399 (633)
T ss_pred cCcCC---cccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhC
Confidence 22432 244566777889999999999999999999999999999999999999999999999999999999988753
Q ss_pred C--chhhhhhhhhhhcccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHh
Q 004765 466 D--EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMG 543 (732)
Q Consensus 466 ~--~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t 543 (732)
. ..+....+...+. ..+.++. ++++|||++++|+.++...+ ..+++ ...+.+|++.+++||
T Consensus 400 ~~~~~~~~~~~~~~~~-~~~~e~~-~l~~sHD~~~~g~~~~~~~~-~g~~~--------------~~~~~~r~~~~~~~t 462 (633)
T PRK12313 400 PIYRKYHHNLLTFSFM-YAFSENF-VLPFSHDEVVHGKKSLMHKM-PGDRW--------------QQFANLRLLYTYMIT 462 (633)
T ss_pred ccccccccccchHHHh-hhhhccc-ccCCCCcccccCCccHHHhc-CCCHH--------------HHHHHHHHHHHHHHh
Confidence 2 2333333333332 2344444 37899999998887765322 21111 235678889999999
Q ss_pred cCCccccccccccccCC-CCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCC
Q 004765 544 LGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFM 622 (732)
Q Consensus 544 ~pG~p~l~y~G~E~G~~-~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l 622 (732)
+||+|+| |||+|+|+. +|. .+++++|...+...++.+++|+|+||+||+++|+|
T Consensus 463 ~pG~Pli-f~G~E~g~~~~~~------------------------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL 517 (633)
T PRK12313 463 HPGKKLL-FMGSEFGQFLEWK------------------------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPAL 517 (633)
T ss_pred CCCCcEe-ecccccccCccCC------------------------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHh
Confidence 9999866 999999994 432 13578998766666889999999999999999999
Q ss_pred C------CCcEEEecccCCCcEEEEEeCc------EEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCCCCccccCC
Q 004765 623 T------SEHQYVSRKDEGDRVIVFERGN------LVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDH 690 (732)
Q Consensus 623 ~------~g~~~i~~~~~~~~vlaf~R~~------llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~gg~~~~~~ 690 (732)
+ .++.++...+.+++|+||.|.. ++||+||++ ....+|+|++|.+|+|+++||||+..|||+++.+.
T Consensus 518 ~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~-~~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~ 596 (633)
T PRK12313 518 WELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTP-VEREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNN 596 (633)
T ss_pred hcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCC-CcccceeECCCCCCeEEEEEcCCchhcCCCCcCCC
Confidence 6 3467776666667899999943 999999996 56778999999899999999999999999997653
Q ss_pred CcceeecccccCCCCeEEEEEecCcEEEEEEEecC
Q 004765 691 NAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADE 725 (732)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~~~~ 725 (732)
. .+.+....++++++++.|+|||++++||++..+
T Consensus 597 ~-~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 597 G-TVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred C-ceeecccccCCCCCEEEEEeCCCEEEEEEEccc
Confidence 3 345556678999999999999999999998653
No 10
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=3.7e-97 Score=856.79 Aligned_cols=576 Identities=29% Similarity=0.526 Sum_probs=472.3
Q ss_pred hhhhcccccCCcEEcC----CcEEEEEeCCCcCeEEEEeecCCCCCcccccccCC-CCEEEEEeCCCCCCCCCCCCCCEE
Q 004765 82 AAFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRV 156 (732)
Q Consensus 82 ~~f~~~y~~~G~~~~~----~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~-~GvW~i~ip~~~~g~~~i~hg~~Y 156 (732)
+++...|+.||+|... +|++||+|||+|++|+|+||||+|+...++|.+.+ .|+|+++||+. .+|..|
T Consensus 8 g~~~~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~-------~~g~~Y 80 (613)
T TIGR01515 8 GSHFRSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGI-------GEGELY 80 (613)
T ss_pred CccCChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCC-------CCCCEE
Confidence 4577889999999976 68999999999999999999999988889998874 89999999964 467899
Q ss_pred EEEeeCCCCc-ccccCcccceeccCCCCCCCccEEeCCCccccccc-----cCCCC---CCCCCceEEEEecCCCCCCCC
Q 004765 157 KIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVF-----QHPQP---KKPKSLRIYEAHVGMSSTEPI 227 (732)
Q Consensus 157 k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~IYE~hv~~~~~~~~ 227 (732)
+|+|...+|. ..+.|||++.+...+.. .|+++||. .|.| +..++ ...++++|||+|||+|+.+
T Consensus 81 ~y~v~~~~g~~~~~~DPYA~~~~~~~~~---~s~v~d~~---~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~-- 152 (613)
T TIGR01515 81 KYEIVTNNGEIRLKADPYAFYAEVRPNT---ASLVYDLE---GYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG-- 152 (613)
T ss_pred EEEEECCCCcEEEeCCCCEeeeccCCCC---cEEEECCc---cCccCchhhhhcccccCcccCCceEEEEehhhccCC--
Confidence 9999876654 46899999998877654 58899885 3444 33222 2235799999999999865
Q ss_pred CCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 004765 228 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 307 (732)
Q Consensus 228 ~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~ 307 (732)
|||++++++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||+
T Consensus 153 -g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~ 231 (613)
T TIGR01515 153 -LSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHF 231 (613)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCc
Confidence 9999999433599999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccc
Q 004765 308 SNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQV 386 (732)
Q Consensus 308 s~~~~~~~~~~dg~~~~yf~~~~-~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~ 386 (732)
+.+. ..+..|++.. .|++.+. .+.++.|++++||+++|+||++|++++++|++||||||||||+|++|++.++|...
T Consensus 232 ~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~ 309 (613)
T TIGR01515 232 PKDD-HGLAEFDGTP-LYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDE 309 (613)
T ss_pred CCcc-chhhccCCCc-ceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccc
Confidence 9875 4566777764 4554443 35567899999999999999999999999999999999999999999998887765
Q ss_pred cccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhcCC
Q 004765 387 AFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD 466 (732)
Q Consensus 387 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~~ 466 (732)
+... .+..++..+.++++||+++++.|++.+|++++|||+++.+|.++.+...+|+|||++|++.|++.++.+++...
T Consensus 310 ~~~~--~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~ 387 (613)
T TIGR01515 310 GEWS--PNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDP 387 (613)
T ss_pred cccc--ccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhCh
Confidence 3211 12445667888999999999999999999999999999999999999999999999999999999988886422
Q ss_pred --chhhhhhhhhhhcccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhc
Q 004765 467 --EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGL 544 (732)
Q Consensus 467 --~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~ 544 (732)
+.+....+...+. ..+.++++ +++|||+++.|++++... |.+++ ....+.+|++.+++||+
T Consensus 388 ~~~~~~~~~~~~~~~-~~~~e~~~-~~~sHD~~~~g~~~i~~~---------~~g~~------~~~~~~~r~~~~~~~t~ 450 (613)
T TIGR01515 388 VERQYHHQLITFSML-YAFSENFV-LPLSHDEVVHGKKSLLNK---------MPGDY------WQKFANYRALLGYMWAH 450 (613)
T ss_pred hhHhhccccccHHHH-HHhhhccc-cCCCCCCcccCcccHHHh---------CCCch------HHHHHHHHHHHHHHHhC
Confidence 1111111222222 23445554 789999999888776532 22221 12256788899999999
Q ss_pred CCccccccccccccCC-CCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCC
Q 004765 545 GGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT 623 (732)
Q Consensus 545 pG~p~l~y~G~E~G~~-~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~ 623 (732)
||+|.| |||+|+|+. +|.+ +++++|...+...++.+++|+|+||+||+++|+|+
T Consensus 451 pG~pli-f~G~E~g~~~~~~~------------------------~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~ 505 (613)
T TIGR01515 451 PGKKLL-FMGSEFAQGSEWND------------------------TEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALY 505 (613)
T ss_pred CCCCEE-EcchhcCcCCCCCC------------------------CccCCCccccCcccHHHHHHHHHHHHHHhhCHHhh
Confidence 999866 999999994 5532 24788987666678899999999999999999985
Q ss_pred ------CCcEEEecccCCCcEEEEEeC------cEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCCCCccccCCC
Q 004765 624 ------SEHQYVSRKDEGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHN 691 (732)
Q Consensus 624 ------~g~~~i~~~~~~~~vlaf~R~------~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~gg~~~~~~~ 691 (732)
.+++|+...+.+++|+||.|. .++||+||++ ....+|+|++|.+|+|++||||++..|||.++++..
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~-~~~~~Y~i~~p~~g~~~~il~Sd~~~~gG~g~~~~~ 584 (613)
T TIGR01515 506 EHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTP-VVRHQYRVGVPQPGQYREVLNSDSETYGGSGQGNKG 584 (613)
T ss_pred ccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCC-CCccceEeCCCCCCeEEEEEeCChhhcCCCCcCCCC
Confidence 457778776667789999992 4999999996 677899999998899999999999999999987755
Q ss_pred cceeecccccCCCCeEEEEEecCcEEEEEE
Q 004765 692 AEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 721 (732)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~ 721 (732)
. ..+....+++++++|.|+|||++++|||
T Consensus 585 ~-~~~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 585 P-LSAEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred c-eeccccccCCCCCEEEEEeCCcEEEEeC
Confidence 3 3555567899999999999999999985
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-98 Score=837.39 Aligned_cols=588 Identities=31% Similarity=0.502 Sum_probs=494.8
Q ss_pred HHHhhcCChhhhhcccccCCcEEcCC---cEEEEEeCCCcCeEEEEeecCCCCCcccccccC-CCCEEEEEeCCCCCCCC
Q 004765 73 DIDKYEGGLAAFSRGYEKFGFIRSDT---GITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSP 148 (732)
Q Consensus 73 ~i~~~~g~l~~f~~~y~~~G~~~~~~---gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~-~~GvW~i~ip~~~~g~~ 148 (732)
+++.+......+.+.|+.||+|..+. |++|++|||+|+.|+|+||||+|+...++|... ++|+|+++||+..
T Consensus 8 ~~d~~~~~~~~~~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~---- 83 (628)
T COG0296 8 EMDDYLFAEGTHLRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAP---- 83 (628)
T ss_pred cccccccccccchhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCC----
Confidence 34444555566778899999998643 599999999999999999999999988888743 8899999999754
Q ss_pred CCCCCCEEEEEeeCCCCcc-cccCcccceeccCCCCCCCccEEeCCCccccccccCC----C--CCCCCCceEEEEecCC
Q 004765 149 PIPHGSRVKIHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP----Q--PKKPKSLRIYEAHVGM 221 (732)
Q Consensus 149 ~i~hg~~Yk~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~IYE~hv~~ 221 (732)
.|.+|||++.+.+|.. ...|||+++....|.+ .|++++++ .|.|++. + .+..++++|||+|||+
T Consensus 84 ---~G~~Yky~l~~~~g~~~~~~DP~a~~~~~~p~~---aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs 154 (628)
T COG0296 84 ---PGTRYKYELIDPSGQLRLKADPYARRQEVGPHT---ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGS 154 (628)
T ss_pred ---CCCeEEEEEeCCCCceeeccCchhhccCCCCCC---cceecCCC---CcccccccccccccCCCCCCceEEEEEeee
Confidence 4679999999998843 5678999999888887 68999985 3777732 2 2235799999999999
Q ss_pred CCCCCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 004765 222 SSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 301 (732)
Q Consensus 222 ~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilD 301 (732)
|+++ ..-++.++++++|||||+||||||+||||.|||++.|||||++.||||++|||||+|||+|||+||++||.||||
T Consensus 155 ~~~~-~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 155 FTPD-RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred ccCC-CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 9986 555566666699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccc
Q 004765 302 IVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 381 (732)
Q Consensus 302 vV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~ 381 (732)
+|+||++++. .++..|||+....+....++.++.|++..+|++++|||+||+++++||+++|||||||+|||.+|+|.|
T Consensus 234 ~V~~HF~~d~-~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d 312 (628)
T COG0296 234 WVPNHFPPDG-NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLD 312 (628)
T ss_pred ecCCcCCCCc-chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccc
Confidence 9999999976 889999999754444455688999999999999999999999999999999999999999999999998
Q ss_pred cCccccccCCc-ccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccCcccchhhHHHHHH
Q 004765 382 HGLQVAFTGNY-SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIE 460 (732)
Q Consensus 382 ~g~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~ 460 (732)
+.+.. +.| .+..|+.++.++++|++.+++.|+...|++++|+|+|+++|..+.+...+|+||+|+++|+++++...
T Consensus 313 ~~~~~---~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~ 389 (628)
T COG0296 313 YSRAE---GEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLF 389 (628)
T ss_pred hhhhh---hcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHH
Confidence 66543 222 34567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC--chhhhhhhhhhhcccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHH
Q 004765 461 LLKKRD--EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIR 538 (732)
Q Consensus 461 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~ 538 (732)
++.+.+ +.+.++.+...+. +...+ .+.|+.||||+++|++++... |.+++. ...+.+|.+.
T Consensus 390 y~~~~~~~r~~~h~~~tf~~~-y~~se-~~~l~~sHDevvhGk~sl~~r---------m~g~~~------~~~a~lr~~~ 452 (628)
T COG0296 390 YFGKDPVYRKYHHGELTFGLL-YAFSE-NVVLPLSHDEVVHGKRSLGER---------MPGDAW------QKFANLRALA 452 (628)
T ss_pred hcccCccccccccCCCccccc-cccce-eEeccccccceeecccchhcc---------CCcchh------hhHHHHHHHH
Confidence 998654 4667777766654 34444 455999999999999987533 333322 3467788899
Q ss_pred HHHHhcCCccccccccccccC-CCCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCcc----ccccHHHHHHHHHHH
Q 004765 539 LVTMGLGGEAYLNFMGNEFGH-PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD----YLRYRGMQEFDRAMQ 613 (732)
Q Consensus 539 ~l~~t~pG~p~l~y~G~E~G~-~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~----~~~~~~l~~f~r~L~ 613 (732)
++|+++||+| |+|||+|||+ .+|..+. ..+|...+ ..+++.+.+|.+.|+
T Consensus 453 a~~~~~Pgk~-LLFMG~Efgq~~e~~~~~------------------------~~~w~~L~~~~~~g~~~~~~~~~~~ln 507 (628)
T COG0296 453 AYMWLHPGKP-LLFMGEEFGQGREWNFFS------------------------SLDWLLLDQAVREGRHKEFRRLVRDLN 507 (628)
T ss_pred HHHHhCCCce-eeecchhhccCCCCcccC------------------------CCChhhhhhccccchHHHHHHHHHhhH
Confidence 9999999997 5599999999 4777543 34553333 224789999999999
Q ss_pred HHHHHhCCC------CCCcEEEecccCCCcEEEEEe-------CcEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCC
Q 004765 614 HLEEKYGFM------TSEHQYVSRKDEGDRVIVFER-------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDP 680 (732)
Q Consensus 614 ~LR~~~~~l------~~g~~~i~~~~~~~~vlaf~R-------~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~ 680 (732)
++.+..+.+ .+++.|+..++.+.+|++|.| +.+++|+||++ ..+.+|+++++.+|.|+++||||..
T Consensus 508 ~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~-~~~~~y~~~~~~~g~~~~~lntd~~ 586 (628)
T COG0296 508 ALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTP-VPRVDYRVGVPVAGRWREVLNTDLA 586 (628)
T ss_pred HhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCC-CcccccccCCcccccEEEeccchHH
Confidence 888776544 477899988887778999999 24888888886 6789999999989999999999999
Q ss_pred CCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEE
Q 004765 681 LFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 721 (732)
Q Consensus 681 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~ 721 (732)
.|||++..+....+.+....++++..+++++|||.+++||+
T Consensus 587 ~~ggs~~~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 587 EYGGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred HhcCCccccccceecceeeeccCcceeeEEecCCceeeEee
Confidence 99999987765545666667788999999999999999987
No 12
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=3.5e-75 Score=674.20 Aligned_cols=511 Identities=18% Similarity=0.262 Sum_probs=371.9
Q ss_pred cCCcEEcCCcEEEEEeCCCcCeEEEEeecCCCCCc----ccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004765 90 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN----ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 165 (732)
Q Consensus 90 ~~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~~~----~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~ 165 (732)
+||+|+..+|++|+||||+|++|+|++ |++|+.. .++|.+..+|+|+++||+. .+|..|+|++...++
T Consensus 11 ~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~-------~~g~~Y~y~v~~~~~ 82 (605)
T TIGR02104 11 ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGD-------LHGYFYTYQVCINGK 82 (605)
T ss_pred CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCC-------CCCCEEEEEEEcCCC
Confidence 799999999999999999999999998 8888543 5789988899999999964 457899999987654
Q ss_pred cccccCcccceeccCCCCCCCccEEeCCCccccccccCCC---CCCCCCceEEEEecCCCCCCCC-----CCcHHhHHHh
Q 004765 166 IKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ---PKKPKSLRIYEAHVGMSSTEPI-----INTYANFRDD 237 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~IYE~hv~~~~~~~~-----~g~~~~~~~~ 237 (732)
.....||||+.+...+. .++++|+...+.+.|...+ +..+++++|||+|||+|+..++ .|+|+++++.
T Consensus 83 ~~~~~DPya~~~~~~~~----~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~ 158 (605)
T TIGR02104 83 WRETVDPYAKAVTVNGK----RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTET 158 (605)
T ss_pred eEEEcCCCcceeccCCC----cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeecc
Confidence 45688999998765432 5889998644456676543 3356789999999999986432 5899998842
Q ss_pred ----------hccccccCCccEEEECCcccCCCC--------CCCCCccccccCCCCCCCC--------HHHHHHHHHHH
Q 004765 238 ----------VLPRIKRLGYNAVQIMAVQEHSYY--------ASFGYHVTNFFAPSSRCGT--------PDDLKSLIDKA 291 (732)
Q Consensus 238 ----------~L~ylk~LGv~~I~L~Pi~e~~~~--------~~~GY~~~~~~a~d~~~Gt--------~~d~k~LV~~a 291 (732)
+|||||+||||+||||||++++.. .+|||++++||+|+++||+ ++|||+||++|
T Consensus 159 ~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~ 238 (605)
T TIGR02104 159 GTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQAL 238 (605)
T ss_pred CccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHH
Confidence 499999999999999999998742 3699999999999999997 59999999999
Q ss_pred HHcCCEEEEEecccccCCCccccccCCCCCCCCcccc-CCCCCcc--cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCe
Q 004765 292 HELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHS-GSRGYHW--MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDG 368 (732)
Q Consensus 292 H~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~-~~~g~~~--~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDG 368 (732)
|++||+||||+|+||++... ...|++..+.||.. +..+... .....++|+++|+||++|++++++|++||||||
T Consensus 239 H~~Gi~VilDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDG 315 (605)
T TIGR02104 239 HENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDG 315 (605)
T ss_pred HHCCCEEEEEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999998542 23566666655543 3333221 112358999999999999999999999999999
Q ss_pred EEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceecccc-----CC
Q 004765 369 FRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD-----GG 443 (732)
Q Consensus 369 fR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~-----gg 443 (732)
||||++.++ ..+||+++++.+++.+|++++|||.|...+.+...... .+
T Consensus 316 fR~D~~~~~--------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~ 369 (605)
T TIGR02104 316 FRFDLMGIH--------------------------DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQ 369 (605)
T ss_pred EEEechhcC--------------------------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCC
Confidence 999999765 13489999999999999999999999765543321110 11
Q ss_pred cccCcccchhhHHHHHHHHhc-CCchh------hhhhhhhhhc----------ccccccceeecccccccccccccchhh
Q 004765 444 VGFDYRLQMAIADKWIELLKK-RDEDW------KMGAIVHTMT----------NRRWLEKCVAYAESHDQALVGDKTIAF 506 (732)
Q Consensus 444 ~gfd~~~~~~~~~~~~~~l~~-~~~~~------~~~~~~~~~~----------~~~~~~~~v~~~esHD~~r~g~~~~~~ 506 (732)
+.....|+..+.+.++...-. ....+ ....+...+. ....+..+|+|++|||+.|+.++...
T Consensus 370 ~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~- 448 (605)
T TIGR02104 370 MPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLSL- 448 (605)
T ss_pred CCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHHh-
Confidence 111122333333333311100 00011 1111222221 12234578999999999887654110
Q ss_pred hcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCC-
Q 004765 507 WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSY- 585 (732)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~s~- 585 (732)
.. . ....+...++.|++.+++|++||+|+| |||+|+|+... +++++|
T Consensus 449 --~~-----------~-~~~~~~~~~r~rla~alllts~GiP~i-y~GdE~g~s~~-----------------g~~n~y~ 496 (605)
T TIGR02104 449 --AN-----------P-DETEEQLKKRQKLATAILLLSQGIPFL-HAGQEFMRTKQ-----------------GDENSYN 496 (605)
T ss_pred --hC-----------C-CCCHHHHHHHHHHHHHHHHHcCCCcee-ecchhhhccCC-----------------CCCCCcc
Confidence 00 0 011234567789999999999999977 99999999642 222333
Q ss_pred -cccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEE-----E-ecccCCCcEEEEEeC---------cEEEE
Q 004765 586 -DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQY-----V-SRKDEGDRVIVFERG---------NLVFV 649 (732)
Q Consensus 586 -~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~-----i-~~~~~~~~vlaf~R~---------~llvv 649 (732)
..+++.++|...+ .++.+++|+|+||+|||++|+|+.+... + .....++.|++|.|. .++||
T Consensus 497 ~~d~~~~ldW~~~~--~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv 574 (605)
T TIGR02104 497 SPDSINQLDWDRKA--TFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVI 574 (605)
T ss_pred CCCcccccCccccc--cchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEE
Confidence 3457789998643 4678999999999999999999876321 1 112235679999992 48999
Q ss_pred EEcCCCCcccceEEcccCCceEEEEEeCCCC
Q 004765 650 FNFHWNSSYSDYRVGCLKPGKYKIVLDSDDP 680 (732)
Q Consensus 650 ~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~ 680 (732)
+|++. . .+++.+|.+|.|+.+++++..
T Consensus 575 ~N~s~-~---~~~v~lp~~~~w~~~~~~~~~ 601 (605)
T TIGR02104 575 HNANP-E---PVDIQLPSDGTWNVVVDNKNA 601 (605)
T ss_pred EeCCC-C---CeEEECCCCCCEEEEECCCcC
Confidence 99994 2 356666767899999998653
No 13
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=3.4e-73 Score=646.94 Aligned_cols=479 Identities=26% Similarity=0.362 Sum_probs=358.8
Q ss_pred EEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCcccccCcccceecc
Q 004765 100 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQ 179 (732)
Q Consensus 100 v~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
|+|++|||+|++|+|+++ + ..++|++.++|+|++++|+. .+|..|+|+|++ .....|||++....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~--~~~~m~k~~~GvW~~~v~~~-------~~G~~Y~y~v~g---~~~v~DPya~~~~~ 65 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G--ALHAMQRLGDGWFEITVPPV-------GPGDRYGYVLDD---GTPVPDPASRRQPD 65 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C--CEEeCeECCCCEEEEEECCC-------CCCCEEEEEEee---eEEecCcccccccc
Confidence 589999999999999973 2 36899999999999999964 357799999975 34678899987543
Q ss_pred CCCCCCCccEEeCCCccccccccCCCC--CCCCCceEEEEecCCCCCCCCCCcHHhHHHhhccccccCCccEEEECCccc
Q 004765 180 APGEIPYNGIYYDPPEEEKYVFQHPQP--KKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQE 257 (732)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e 257 (732)
.+. ..|+++||. .|.|+++.+ ..+++++|||+|||+|+. .|||++++ ++|||||+||||+||||||++
T Consensus 66 ~~~---~~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~-~~l~yl~~LGv~~i~L~Pi~~ 135 (542)
T TIGR02402 66 GVH---GPSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAI-EKLPYLADLGITAIELMPVAQ 135 (542)
T ss_pred CCC---CCeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHH-HhhHHHHHcCCCEEEeCcccc
Confidence 332 258999985 488887653 245899999999999986 49999999 799999999999999999999
Q ss_pred CCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccC
Q 004765 258 HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 337 (732)
Q Consensus 258 ~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w 337 (732)
++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.++ ..+..+ .+ ||... ....|
T Consensus 136 ~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~-~~~~~~---~~-y~~~~---~~~~w 207 (542)
T TIGR02402 136 FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG-NYLPRY---AP-YFTDR---YSTPW 207 (542)
T ss_pred CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc-cccccc---Cc-cccCC---CCCCC
Confidence 998788999999999999999999999999999999999999999999998764 222233 22 66432 23345
Q ss_pred CCCCCCCCCH---HHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHh
Q 004765 338 DSRLFNYGSW---EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 414 (732)
Q Consensus 338 ~~~~ln~~~~---ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 414 (732)
+ ..+|+.+| +||++|++++++|++||||||||||++.+|.. .+++.||+++++.
T Consensus 208 g-~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~----------------------~~~~~~l~~~~~~ 264 (542)
T TIGR02402 208 G-AAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD----------------------TSAKHILEELARE 264 (542)
T ss_pred C-CccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc----------------------ccHHHHHHHHHHH
Confidence 4 57999999 99999999999999999999999999988732 2256799999999
Q ss_pred hhccCCC---EEEEEecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhcCCchh------hhhhhhhhhcc-----
Q 004765 415 IHGLYPE---AVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW------KMGAIVHTMTN----- 480 (732)
Q Consensus 415 v~~~~p~---~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~----- 480 (732)
+++++|+ +++|||.+...+..+.+...+|++||..|+..+.+.+...+......+ ....+...+..
T Consensus 265 ~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~ 344 (542)
T TIGR02402 265 VHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYD 344 (542)
T ss_pred HHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccC
Confidence 9999999 999999998888888777778899999998888777776665422111 11122211110
Q ss_pred ------------cc----cccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhc
Q 004765 481 ------------RR----WLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGL 544 (732)
Q Consensus 481 ------------~~----~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~ 544 (732)
.. -+.++|+|++|||+. |+.++... +... . +.+++|++.+++||+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~--gn~~~~~R---------l~~~------~--~~~~~~la~alllt~ 405 (542)
T TIGR02402 345 GEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQI--GNRALGER---------LSQL------L--SPGSLKLAAALLLLS 405 (542)
T ss_pred ccccccccccCCCCCCCCCHHHEEEEccCcccc--cccchhhh---------hhhc------C--CHHHHHHHHHHHHHc
Confidence 00 124679999999983 33222100 1000 0 125789999999999
Q ss_pred CCccccccccccccCCCC----CCCCCCCC--------------CCCCCcccCCCCCCCcccCcccCCCCccccccHHHH
Q 004765 545 GGEAYLNFMGNEFGHPEW----IDFPRGDQ--------------RLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQ 606 (732)
Q Consensus 545 pG~p~l~y~G~E~G~~~~----~d~p~~d~--------------~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~ 606 (732)
||+|+| |||||+|+..- .|++..+. ........+........++++++|.......+.+++
T Consensus 406 pGiP~I-y~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~ 484 (542)
T TIGR02402 406 PYTPLL-FMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWL 484 (542)
T ss_pred CCCcee-eccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHH
Confidence 999988 99999999652 12211000 000001112222333356788999887655678999
Q ss_pred HHHHHHHHHHHHhCCCCCCc-EEEec-ccCCCcEEEEEe--CcEEEEEEcCC
Q 004765 607 EFDRAMQHLEEKYGFMTSEH-QYVSR-KDEGDRVIVFER--GNLVFVFNFHW 654 (732)
Q Consensus 607 ~f~r~L~~LR~~~~~l~~g~-~~i~~-~~~~~~vlaf~R--~~llvv~Nf~~ 654 (732)
+|+|+||+|||++++|+.+. ..+.. ...++.++++.. +.++|++|+++
T Consensus 485 ~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~ 536 (542)
T TIGR02402 485 AFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLST 536 (542)
T ss_pred HHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCC
Confidence 99999999999999986542 22221 134577888876 57999999994
No 14
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=2.8e-71 Score=658.80 Aligned_cols=643 Identities=17% Similarity=0.251 Sum_probs=411.7
Q ss_pred ccccccCceeecCCccccccchhhccCCCCCCCCCCCCcceecCCCCccc-hHHHHHHHHHHHHHHHHHHhhcCChhhhh
Q 004765 7 VEIEDHGPVTLQGKVSSEKSEVKREVGPRSIPPPGAGQNIYEIDPNLLGH-RQHLDYRYGRYKQMCEDIDKYEGGLAAFS 85 (732)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~l~~~-~~~~~~r~~~~~~~~~~i~~~~g~l~~f~ 85 (732)
.++.++.+||+.++....++.+++......+....++... .=||--.| ...+..+.. .+.++++..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~--~~~~d~~y~y~------- 316 (1111)
T TIGR02102 248 EALLEQLKITDKEGNTVDITDVTIDTDKKTVTVKGDFNLD--KSPYTVSYNEVSVPTKQS--WRLKDEMYAYD------- 316 (1111)
T ss_pred hhhhcccceeccCCceeecceeeecCCcceEEeeccCCcc--cCCEEEEeccccchhhcc--hhhhhhhhccC-------
Confidence 3455777888888876666555554433333333222110 00211111 111111111 22333332222
Q ss_pred cccccCCcEEcCCc-EEEEEeCCCcCeEEEEe-ecCCCCC--cccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004765 86 RGYEKFGFIRSDTG-ITYREWAPGAKSASLIG-DFNNWNP--NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 161 (732)
Q Consensus 86 ~~y~~~G~~~~~~g-v~f~~WAP~A~~V~L~g-dfn~w~~--~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~ 161 (732)
.+||+++..+| ++|++|||+|++|+|++ |+++|+. ..++|.+.+.|+|+++|++...|.. --+|..|+|+|.
T Consensus 317 ---g~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~-d~~G~~Y~Y~V~ 392 (1111)
T TIGR02102 317 ---GKLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGID-SLTGYYYHYEIT 392 (1111)
T ss_pred ---CCCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcc-cCCCceEEEEEE
Confidence 16999998776 89999999999999997 5566654 3679999999999999996443321 136889999998
Q ss_pred CCCCcccccCcccceeccCCC------CCCCccEEeCCCcc--ccccccCC-CCCCCCCceEEEEecCCCCCCC------
Q 004765 162 TPSGIKDSIPAWIKFSVQAPG------EIPYNGIYYDPPEE--EKYVFQHP-QPKKPKSLRIYEAHVGMSSTEP------ 226 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~IYE~hv~~~~~~~------ 226 (732)
..+......+|||+.+....+ ....+++++|++.. +.|.|.+. ....+++++|||+|||+|+.++
T Consensus 393 ~~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~ 472 (1111)
T TIGR02102 393 RGGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDL 472 (1111)
T ss_pred CCCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCccc
Confidence 765556788999997654221 11246788888532 24777753 2345789999999999998532
Q ss_pred --CCCcHHhHHHhhccccccCCccEEEECCcccCCC------------------CCCCCCccccccCCCCCCCC------
Q 004765 227 --IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY------------------YASFGYHVTNFFAPSSRCGT------ 280 (732)
Q Consensus 227 --~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~------------------~~~~GY~~~~~~a~d~~~Gt------ 280 (732)
..|+|++|+ ++|||||+|||||||||||++++. ..+|||++.+||+|+++||+
T Consensus 473 ~~~~Gtf~gl~-ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~ 551 (1111)
T TIGR02102 473 TAQFGTFAAFV-EKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPE 551 (1111)
T ss_pred ccCCcCHHHHH-HhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCcc
Confidence 369999999 799999999999999999997421 13599999999999999998
Q ss_pred --HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccC-CCCC-cccCCCCCCCCCCHHHHHHHHHH
Q 004765 281 --PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSG-SRGY-HWMWDSRLFNYGSWEVLRFLLSN 356 (732)
Q Consensus 281 --~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~-~~g~-~~~w~~~~ln~~~~ev~~~l~~~ 356 (732)
.+|||+||++||++||+||||||+||++..+ .|++..+.||+.. ..|. ...|+...+|.++++||++|+++
T Consensus 552 ~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDs 626 (1111)
T TIGR02102 552 LRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDS 626 (1111)
T ss_pred ccHHHHHHHHHHHHHCCCEEEEecccccccccc-----cccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHH
Confidence 5899999999999999999999999998764 4777666676542 2332 23466778999999999999999
Q ss_pred HHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCc-
Q 004765 357 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF- 435 (732)
Q Consensus 357 l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~- 435 (732)
++||++||||||||||++.++ ..++++.++..+++++|++++|||.|......
T Consensus 627 l~yWv~ey~VDGFRfDl~g~~--------------------------d~~~~~~~~~~l~~~dP~~~liGE~W~~~~g~~ 680 (1111)
T TIGR02102 627 IKYLVDEFKVDGFRFDMMGDH--------------------------DAASIEIAYKEAKAINPNIIMIGEGWRTYAGDE 680 (1111)
T ss_pred HHHHHHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHhCcCEEEEEecccccCCCC
Confidence 999999999999999998643 12478888899999999999999999752111
Q ss_pred ---eeccccCCcccCcccchhhHHHHHHHHhcCC-----------chhhhhhhhhhhcc------cccccceeecccccc
Q 004765 436 ---CIPVQDGGVGFDYRLQMAIADKWIELLKKRD-----------EDWKMGAIVHTMTN------RRWLEKCVAYAESHD 495 (732)
Q Consensus 436 ---~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~------~~~~~~~v~~~esHD 495 (732)
+.+.....+.++.. ...+.+.++..+++.. .......+...+.. ...+..+|+|++|||
T Consensus 681 ~~~~~~~~~~~~~~~~~-ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~~~~P~~~VnYV~aHD 759 (1111)
T TIGR02102 681 GDPVQAADQDWMKYTET-VGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFEADSPGDVVQYIAAHD 759 (1111)
T ss_pred cccccccchhhHhcCCc-ccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccccCCcccEEEEEecCC
Confidence 11111111111100 0112223333333210 00111223333321 134567999999999
Q ss_pred cccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCC-----CCC
Q 004765 496 QALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPR-----GDQ 570 (732)
Q Consensus 496 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~-----~d~ 570 (732)
+.++-++.... +. .+...........++.|++.+++|+++|+|+| ++|+|||+....+-+. .+.
T Consensus 760 n~TL~D~l~~~--~~--------~~~~~~e~~~~~~~r~rla~~llllSQGiPfi-~aGqEf~RTK~gnnn~y~~~~~~~ 828 (1111)
T TIGR02102 760 NLTLHDVIAQS--IK--------KDPKVAENQEEIHRRIRLGNLMVLTSQGTAFI-HSGQEYGRTKQFRNPDYRTPVSED 828 (1111)
T ss_pred CCchHhhhhhc--cc--------cCcccccchHHHHHHHHHHHHHHHHhCcHhhh-hcchhhhcccCCCccccccccccc
Confidence 98875542100 00 00000000012345778888999999999987 9999999975433110 000
Q ss_pred CCCCCc----ccC--------CCCCCC--cccCcccCCCCccc----cccHHHHHHHHHHHHHHHHhCCCCCCc------
Q 004765 571 RLPNGQ----FVP--------GNNFSY--DKCRRRFDLGDADY----LRYRGMQEFDRAMQHLEEKYGFMTSEH------ 626 (732)
Q Consensus 571 ~~~~~~----~~~--------gn~~s~--~~~r~~~~w~~~~~----~~~~~l~~f~r~L~~LR~~~~~l~~g~------ 626 (732)
..|... ... ...+|| ...-+.++|..... +.+..+.+|+|.||+|||++|+++.+.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~ 908 (1111)
T TIGR02102 829 KVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDR 908 (1111)
T ss_pred ccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccchhhhcC
Confidence 000000 001 125666 34566899987632 223689999999999999999986442
Q ss_pred --EEEecc-----cCCCcEEEEEe-----CcEEEEEEcCCCCcccceEEcccCC----ceEEEEEeCCCCCCCCccccCC
Q 004765 627 --QYVSRK-----DEGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKP----GKYKIVLDSDDPLFGGYKRLDH 690 (732)
Q Consensus 627 --~~i~~~-----~~~~~vlaf~R-----~~llvv~Nf~~~~~~~~~~l~~~~~----g~~~~vl~sd~~~~gg~~~~~~ 690 (732)
.++... ...+.|++|.- +.++|++|.++ . ...+.+|.. ..|+.+++.+.. |...+..
T Consensus 909 ~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~-~---~~~~~lp~~~~~~~~~~v~~~~~~~---g~~~~~~ 981 (1111)
T TIGR02102 909 KVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD-K---ARTLTLGEDYAHLTVGEVVVDAEQA---GVTGIAE 981 (1111)
T ss_pred cEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC-C---CEEEECCCCcccccceEEEEccccc---Ccccccc
Confidence 222211 11357899986 36899999884 2 234444432 378888876433 2111110
Q ss_pred CcceeecccccCCCCeEEEEEecCcEEEEEEEec
Q 004765 691 NAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 724 (732)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~~~ 724 (732)
... +.- ..-.++|||+|++||+...
T Consensus 982 ~~~-------~~~--~~~~~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 982 PKG-------VEL--TAEGLKLDPLTAAVVRVGG 1006 (1111)
T ss_pred ccc-------ccc--cCCeEEEcCcEEEEEEecc
Confidence 000 000 0125889999999999874
No 15
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=3.1e-70 Score=634.29 Aligned_cols=555 Identities=19% Similarity=0.258 Sum_probs=383.6
Q ss_pred ccCCcEEcCCcEEEEEeCCCcCeEEEEeecCCCCC---cccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCC--
Q 004765 89 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP---NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-- 163 (732)
Q Consensus 89 ~~~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~~---~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~-- 163 (732)
.+||+++.++|++|+||||+|++|+|+. |+++.. ..++|.+..+|+|+++||+.. +|..|+|+++++
T Consensus 5 ~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~-------~g~~Y~yrv~g~~~ 76 (688)
T TIGR02100 5 FPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGAQ-------PGQLYGYRVHGPYD 76 (688)
T ss_pred cCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCCC-------CCCEEEEEEeeeeC
Confidence 4699999999999999999999999986 665543 246899888999999999753 577999999863
Q ss_pred --CC-----cccccCcccceeccCCC-------------------------CCCCccEEeCCCccccccccCC--CCC-C
Q 004765 164 --SG-----IKDSIPAWIKFSVQAPG-------------------------EIPYNGIYYDPPEEEKYVFQHP--QPK-K 208 (732)
Q Consensus 164 --~~-----~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~-~ 208 (732)
.| ....+||||+.+...+. .....++++|+ .|.|++. +|. .
T Consensus 77 ~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~ 152 (688)
T TIGR02100 77 PENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTP 152 (688)
T ss_pred CCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCC
Confidence 22 13568999998765421 00125777776 3788754 333 3
Q ss_pred CCCceEEEEecCCCCCC------CCCCcHHhHHHh-hccccccCCccEEEECCcccCCCC---------CCCCCcccccc
Q 004765 209 PKSLRIYEAHVGMSSTE------PIINTYANFRDD-VLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFF 272 (732)
Q Consensus 209 ~~~~~IYE~hv~~~~~~------~~~g~~~~~~~~-~L~ylk~LGv~~I~L~Pi~e~~~~---------~~~GY~~~~~~ 272 (732)
+++++|||+||++|+.. ...|||+||++. +|||||+|||||||||||++++.. .+|||+++|||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 58999999999999863 235999999952 599999999999999999998642 36999999999
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccc-cCCCCCCC-CccccCCC--CC--cccCCCCCCC
Q 004765 273 APSSRC---GTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSR--GY--HWMWDSRLFN 343 (732)
Q Consensus 273 a~d~~~---Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~-~~~dg~~~-~yf~~~~~--g~--~~~w~~~~ln 343 (732)
+|+++| |+++|||+||++||++||+||||+|+||++..+..+. ..+.+.++ .||..... +. .+..+.+++|
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln 312 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLN 312 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCcccccc
Confidence 999999 6799999999999999999999999999998754332 23444333 34443322 22 1222347899
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEE
Q 004765 344 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 423 (732)
Q Consensus 344 ~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~ 423 (732)
+++|+||++|+++++||++||||||||||++..|.....+. + ....+++++++. ...|+++
T Consensus 313 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~----------------~-~~~~~~~~i~~d--~~~~~~~ 373 (688)
T TIGR02100 313 LSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGF----------------D-MLSGFFTAIRQD--PVLAQVK 373 (688)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCC----------------c-ccHHHHHHHHhC--cccCCeE
Confidence 99999999999999999999999999999999885431111 0 123467777653 4678999
Q ss_pred EEEecCCCCCCceeccccCCcccC---cccchhhHHHHHHHHhcCCchhhhhhhhhhhcc--------cccccceeeccc
Q 004765 424 SIGEDVSGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAE 492 (732)
Q Consensus 424 ~iaE~~~~~p~~~~~~~~gg~gfd---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~e 492 (732)
+|||.|...+.. +..+ .|+ ..||..+.+.++.++++... ....+...+.. .+-+..+|||++
T Consensus 374 ligE~W~~~~~~---~~~~--~~~~~~~~~Nd~frd~ir~f~~g~~~--~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~ 446 (688)
T TIGR02100 374 LIAEPWDIGPGG---YQVG--NFPPGWAEWNDRYRDDMRRFWRGDAG--MIGELANRLTGSSDLFEHNGRRPWASINFVT 446 (688)
T ss_pred EEEeeecCCCCc---cccc--CCCCceEEecHHHHHHHHHHHcCCCC--cHHHHHHHHhCCHhhccccCCCcCEEEEEEe
Confidence 999999653321 1111 244 45777788888888875321 12233333321 123457899999
Q ss_pred ccccccccccchhhhc---CChh---------HHHhhh--cCCCCCccchhHHHHHHHHHHHHHhcCCcccccccccccc
Q 004765 493 SHDQALVGDKTIAFWL---MDKD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 558 (732)
Q Consensus 493 sHD~~r~g~~~~~~~~---~~~~---------~~~~~~--~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G 558 (732)
|||+.++.+....... .+++ .-++.. +......+.....+++|++.+++|++||+|+| |||||||
T Consensus 447 ~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i-~~GdE~g 525 (688)
T TIGR02100 447 AHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPML-LAGDEFG 525 (688)
T ss_pred CCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcee-eecHhhc
Confidence 9999876543210000 0000 000000 00111112233467788899999999999987 9999999
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCCc--ccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcE---------
Q 004765 559 HPEWIDFPRGDQRLPNGQFVPGNNFSYD--KCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQ--------- 627 (732)
Q Consensus 559 ~~~~~d~p~~d~~~~~~~~~~gn~~s~~--~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~--------- 627 (732)
++.. |++++|. ...+.++|.... .++.|++|+|+||+|||++|+|+.+..
T Consensus 526 ~t~~-----------------G~~n~y~~~~~~~~~dW~~~~--~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~ 586 (688)
T TIGR02100 526 RTQQ-----------------GNNNAYCQDNEIGWVDWSLDE--GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADG 586 (688)
T ss_pred cCCC-----------------CCCCCccCCCcccccCccccc--ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCC
Confidence 9752 5556653 345689998643 578999999999999999998875411
Q ss_pred --EEecc-------------cCCCcEEEEEe------------CcEEEEEEcCCCCcccceEEcccCC-ceEEEEEeCCC
Q 004765 628 --YVSRK-------------DEGDRVIVFER------------GNLVFVFNFHWNSSYSDYRVGCLKP-GKYKIVLDSDD 679 (732)
Q Consensus 628 --~i~~~-------------~~~~~vlaf~R------------~~llvv~Nf~~~~~~~~~~l~~~~~-g~~~~vl~sd~ 679 (732)
.+.+. .....+|+|.. +.++|++|.+. .. ..+.+|.. ..|+.+++|..
T Consensus 587 ~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~--~~--~~~~lP~~~~~w~~~~dt~~ 662 (688)
T TIGR02100 587 LKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGP--EP--VPFKLPGGGGRWELVLDTAD 662 (688)
T ss_pred CCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCC--CC--eEEECCCCCCcEEEEecCCC
Confidence 12221 12347888876 14899999984 22 34444432 58999999854
Q ss_pred CCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEE
Q 004765 680 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 722 (732)
Q Consensus 680 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~ 722 (732)
.. ... . . ....-.+.|||+|++||.+
T Consensus 663 ~~--~~~-~----~----------~~~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 663 EE--APG-I----H----------LDAGQEAELPARSVLLLRR 688 (688)
T ss_pred CC--Ccc-c----c----------ccCCCEEEEcCCEEEEEeC
Confidence 21 110 0 0 0001358899999999863
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.4e-69 Score=622.21 Aligned_cols=550 Identities=20% Similarity=0.284 Sum_probs=371.7
Q ss_pred cccCCcEEcCCcEEEEEeCCCcCeEEEEeecCCC-CCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCC---
Q 004765 88 YEKFGFIRSDTGITYREWAPGAKSASLIGDFNNW-NPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP--- 163 (732)
Q Consensus 88 y~~~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w-~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~--- 163 (732)
..+||+++.++|++|+||||+|++|+|+. |+++ ....++|.+.++|+|+++||+. .+|..|+|+|+++
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~-------~~G~~Y~yrv~g~~~p 80 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGA-------RPGLRYGYRVHGPWQP 80 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCC-------CCCCEEEEEEccccCc
Confidence 44799999999999999999999999998 7765 3345789888899999999974 4577999999864
Q ss_pred -CC-----cccccCcccceeccCCCC------------------CCCccEEeCCCccccccccCCCC-C-CCCCceEEEE
Q 004765 164 -SG-----IKDSIPAWIKFSVQAPGE------------------IPYNGIYYDPPEEEKYVFQHPQP-K-KPKSLRIYEA 217 (732)
Q Consensus 164 -~~-----~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~IYE~ 217 (732)
.| ....+||||+.+...... ...++++.++ .|.|++..+ . .+++++|||+
T Consensus 81 ~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~ 156 (658)
T PRK03705 81 AQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEA 156 (658)
T ss_pred ccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEE
Confidence 12 234689999987653210 0124556553 488976543 3 3589999999
Q ss_pred ecCCCCC-C-----CCCCcHHhHHH-hhccccccCCccEEEECCcccCCC---------CCCCCCccccccCCCCCCCCH
Q 004765 218 HVGMSST-E-----PIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCGTP 281 (732)
Q Consensus 218 hv~~~~~-~-----~~~g~~~~~~~-~~L~ylk~LGv~~I~L~Pi~e~~~---------~~~~GY~~~~~~a~d~~~Gt~ 281 (732)
|||+|+. + ...|+|+++++ .+|||||+||||+||||||++++. ..+|||++++||+|+++|||.
T Consensus 157 hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~ 236 (658)
T PRK03705 157 HVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASG 236 (658)
T ss_pred ehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCC
Confidence 9999985 2 23599999994 369999999999999999999864 257999999999999999994
Q ss_pred -----HHHHHHHHHHHHcCCEEEEEecccccCCCccccc-cCCCCCCC-CccccCCCCCc--ccCCCCCCCCCCHHHHHH
Q 004765 282 -----DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSRGYH--WMWDSRLFNYGSWEVLRF 352 (732)
Q Consensus 282 -----~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~-~~~dg~~~-~yf~~~~~g~~--~~w~~~~ln~~~~ev~~~ 352 (732)
+|||+||++||++||+||||+|+||++.....+. ..+.+.++ .||.....+.. |..+.++||+++|+|+++
T Consensus 237 ~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~ 316 (658)
T PRK03705 237 PETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDW 316 (658)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHH
Confidence 7999999999999999999999999997432221 23444332 34444434432 333457899999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCC
Q 004765 353 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGM 432 (732)
Q Consensus 353 l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~ 432 (732)
|+++++||++||||||||||++.+|... ..|. . ...+++.++. ..+.|++++|||.|...
T Consensus 317 iid~l~~W~~e~gVDGFRfD~a~~l~~~-----~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 317 AIDCLRYWVETCHVDGFRFDLATVLGRT-----PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIG 376 (658)
T ss_pred HHHHHHHHHHHhCCCEEEEEcHhhhCcC-----cccc------------h-hhHHHHHHhh--CccccceEEEEecccCC
Confidence 9999999999999999999999988432 0111 0 1124444432 23568999999999754
Q ss_pred CCceeccccCCcccC---cccchhhHHHHHHHHhcCCchh--hhhhhhhhh----cccccccceeecccccccccccccc
Q 004765 433 PTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDW--KMGAIVHTM----TNRRWLEKCVAYAESHDQALVGDKT 503 (732)
Q Consensus 433 p~~~~~~~~gg~gfd---~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~----~~~~~~~~~v~~~esHD~~r~g~~~ 503 (732)
+... ..+ .|+ ..||..+.+.++.++....... ....+..+. ...+.+..+|||+++||.-++.+..
T Consensus 377 ~~~~---~~g--~~~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~ 451 (658)
T PRK03705 377 PGGY---QVG--NFPPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCV 451 (658)
T ss_pred CChh---hhc--CCCcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHH
Confidence 3211 111 122 2356666666666665322110 011121111 1223467899999999997765432
Q ss_pred hhhhcC---Chh---------HHHhhhcCCCC--CccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCC
Q 004765 504 IAFWLM---DKD---------MYDFMALDRPS--TPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGD 569 (732)
Q Consensus 504 ~~~~~~---~~~---------~~~~~~~~~~~--~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d 569 (732)
...... +++ .-++.....+. ..+.....++.|++.+++|+++|+|+| +||+|||++..
T Consensus 452 ~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i-~~GdE~grtq~------- 523 (658)
T PRK03705 452 CFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPML-LAGDEHGHSQH------- 523 (658)
T ss_pred hhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHH-HhhHHhccCCC-------
Confidence 100000 000 00001111111 112234556778899999999999988 99999999752
Q ss_pred CCCCCCcccCCCCCCCcc--cCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCc---------EEEeccc-----
Q 004765 570 QRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH---------QYVSRKD----- 633 (732)
Q Consensus 570 ~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~---------~~i~~~~----- 633 (732)
||+++|.. ..+.++|... .+.+++|+|+||+|||++|+|+... .|+....
T Consensus 524 ----------G~nN~y~~~~~i~~~dW~~~----~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 589 (658)
T PRK03705 524 ----------GNNNAYCQDNALTWLDWSQA----DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSA 589 (658)
T ss_pred ----------CCCCCccCCCCccccccchh----hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCCh
Confidence 55666642 4467889854 3699999999999999999886432 2322111
Q ss_pred ----CCCcEEEEEe-CcEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCCCCccccCCCcceeecccccCCCCeEE
Q 004765 634 ----EGDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSF 708 (732)
Q Consensus 634 ----~~~~vlaf~R-~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 708 (732)
.....++|.- +.++|++|-+. . ...+.+|. +.|+.+++++.. +.. +. ..
T Consensus 590 ~~w~~~~~~~~~~~~~~~~v~~N~~~--~--~~~~~lp~-~~w~~~~~~~~~---~~~--------------~~----~~ 643 (658)
T PRK03705 590 DEWQQGPKQLQILLSDRWLIAINATL--E--VTEIVLPE-GEWHAIPPFAGE---DNP--------------VI----TA 643 (658)
T ss_pred hHhCCcceEEEEEECCCEEEEECCCC--C--CeEEECCC-cceEEEEccCCC---ccc--------------cc----Cc
Confidence 1134566665 67999999884 2 24455554 789999654331 100 00 13
Q ss_pred EEEecCcEEEEEEE
Q 004765 709 LVYAPSRTAVVYAL 722 (732)
Q Consensus 709 ~l~lp~~s~~vl~~ 722 (732)
.+.+|++|.+|+..
T Consensus 644 ~~~~~~~~~~~~~~ 657 (658)
T PRK03705 644 VWHGPAHGVCVFQR 657 (658)
T ss_pred eeeecCcEEEEEec
Confidence 46799999999863
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=5.1e-65 Score=595.04 Aligned_cols=547 Identities=17% Similarity=0.222 Sum_probs=363.9
Q ss_pred CCcEEcCCcEEEEEeCCCcCeEEEEeecCCCC-CcccccccC-CCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCC---CC
Q 004765 91 FGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP---SG 165 (732)
Q Consensus 91 ~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~-~~~~~m~~~-~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~---~~ 165 (732)
||+++.++|++|++|||+|++|+|++..++++ ...++|+++ ..|+|++++|+.. +|..|+|+|... .|
T Consensus 128 LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~-------~G~~Y~Y~V~v~~p~~G 200 (898)
T TIGR02103 128 LGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSW-------KGAYYRYEVTVYHPSTG 200 (898)
T ss_pred CCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCC-------CCCEeEEEEEEecCCCC
Confidence 99999999999999999999999998666553 456899887 7899999999754 567999999742 23
Q ss_pred c---ccccCcccceeccCCCCCCCccEEeCCCc--cccccccCC---CCC--CCCCceEEEEecCCCCCC------CCCC
Q 004765 166 I---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHP---QPK--KPKSLRIYEAHVGMSSTE------PIIN 229 (732)
Q Consensus 166 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~--~~~~~~IYE~hv~~~~~~------~~~g 229 (732)
. ....|||++.+.. ++. .|+++|+.. ..+..|... +|. .+++++|||+|||+||.. ...|
T Consensus 201 ~v~~~~v~DPYA~als~-n~~---~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rG 276 (898)
T TIGR02103 201 KVETYLVTDPYSVSLSA-NSE---YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELRG 276 (898)
T ss_pred eECCeEEeCcCcceEcC-CCC---CeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcCc
Confidence 2 3578999998753 343 688888752 134567542 332 568999999999999842 2469
Q ss_pred cHHhHHHh------hccccccCCccEEEECCcccCCC-------------------------------------------
Q 004765 230 TYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY------------------------------------------- 260 (732)
Q Consensus 230 ~~~~~~~~------~L~ylk~LGv~~I~L~Pi~e~~~------------------------------------------- 260 (732)
+|.++++. .|++|++||||||+||||+++..
T Consensus 277 tYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (898)
T TIGR02103 277 KYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQN 356 (898)
T ss_pred eeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 99999942 36666688999999999998731
Q ss_pred -------------------CCCCCCccccccCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEecccccCCCcccc
Q 004765 261 -------------------YASFGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG 314 (732)
Q Consensus 261 -------------------~~~~GY~~~~~~a~d~~~Gt-------~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~ 314 (732)
..+|||+|.+||+|+++|++ ..|||+||++||++||+||||||+||++..++..
T Consensus 357 ~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~ 436 (898)
T TIGR02103 357 DSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPND 436 (898)
T ss_pred ccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccC
Confidence 12699999999999999998 3799999999999999999999999999876544
Q ss_pred ccCCCCCCCCccccCC-CCCcc-cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCc
Q 004765 315 LNMFDGTDGHYFHSGS-RGYHW-MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNY 392 (732)
Q Consensus 315 ~~~~dg~~~~yf~~~~-~g~~~-~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~ 392 (732)
...++...+.||+... .|... ..+..+++.+|++|+++|++++++|++||||||||||++.++.
T Consensus 437 ~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~-------------- 502 (898)
T TIGR02103 437 RSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHP-------------- 502 (898)
T ss_pred cccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCC--------------
Confidence 4557776666766432 23211 1223467899999999999999999999999999999998873
Q ss_pred ccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCce-eccc---c-----CCcc-cCcccchhhHH------
Q 004765 393 SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFC-IPVQ---D-----GGVG-FDYRLQMAIAD------ 456 (732)
Q Consensus 393 ~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~-~~~~---~-----gg~g-fd~~~~~~~~~------ 456 (732)
.+||+++++.+++++|+++++||.|....... .... + .|+| |+-+++.++..
T Consensus 503 ------------~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~ 570 (898)
T TIGR02103 503 ------------KAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDS 570 (898)
T ss_pred ------------HHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCcccc
Confidence 45999999999999999999999996321111 0110 0 1122 22222222210
Q ss_pred -------------------------------------HHHHHHhcCCchhhhhhhh------hhhc------c-cccccc
Q 004765 457 -------------------------------------KWIELLKKRDEDWKMGAIV------HTMT------N-RRWLEK 486 (732)
Q Consensus 457 -------------------------------------~~~~~l~~~~~~~~~~~~~------~~~~------~-~~~~~~ 486 (732)
.+..-+.+...++...... ..+. . ...+..
T Consensus 571 ~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e 650 (898)
T TIGR02103 571 GDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTE 650 (898)
T ss_pred ccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHH
Confidence 0000000000000000000 0000 0 023557
Q ss_pred eeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCC
Q 004765 487 CVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFP 566 (732)
Q Consensus 487 ~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p 566 (732)
+|||+++||+..+-|+-. ...+.....+...+..+++.++.++.+|+|+| .+|+||...+-.+
T Consensus 651 ~inYvs~HDN~TL~D~l~--------------~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~-haG~E~lRSK~~~-- 713 (898)
T TIGR02103 651 TINYVSKHDNQTLWDAIS--------------YKAAAETPSAERVRMQAVSLSTVMLGQGIPFF-HAGSELLRSKSFD-- 713 (898)
T ss_pred heeeeeccCCccHHHHHH--------------hhCCCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchHhhcCCCCC--
Confidence 899999999987755421 11111112344567788999999999999988 9999999976433
Q ss_pred CCCCCCCCCcccCCCCCCCcc--cCcccCCCCccc--------------------------------cccHHHHHHHHHH
Q 004765 567 RGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADY--------------------------------LRYRGMQEFDRAM 612 (732)
Q Consensus 567 ~~d~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~--------------------------------~~~~~l~~f~r~L 612 (732)
.+||.. .-+.++|..... .....+.+++|+|
T Consensus 714 ---------------~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~L 778 (898)
T TIGR02103 714 ---------------RDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLEL 778 (898)
T ss_pred ---------------CCCCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHH
Confidence 222221 223344443211 1246899999999
Q ss_pred HHHHHHhCCCCCCc-----EEEecccC----CCcEEEEEe---------------CcEEEEEEcCCCCcccceEEcccCC
Q 004765 613 QHLEEKYGFMTSEH-----QYVSRKDE----GDRVIVFER---------------GNLVFVFNFHWNSSYSDYRVGCLKP 668 (732)
Q Consensus 613 ~~LR~~~~~l~~g~-----~~i~~~~~----~~~vlaf~R---------------~~llvv~Nf~~~~~~~~~~l~~~~~ 668 (732)
|+||+++|+++-+. ..+.+.+. ..+||+|.- +.++||+|-+++ + ..+ ++....
T Consensus 779 i~lRks~p~Frl~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~-~-~~~-~~~~~~ 855 (898)
T TIGR02103 779 LRIRSSSPLFRLDTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPE-E-VTL-SPDFAG 855 (898)
T ss_pred HHHHhCCcccCCCCHHHHHhheEEeccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCc-c-EEE-ecccCC
Confidence 99999999987441 12323232 267999864 238999998863 2 223 332222
Q ss_pred ceEEEEEeCCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEE
Q 004765 669 GKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 722 (732)
Q Consensus 669 g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~ 722 (732)
..|+..-.... ++...+... . +.. ..-++++||+|++||..
T Consensus 856 ~~~~l~~~~~~---~~d~~v~~~-~-------~~~--~~~~~~vp~~s~~V~~~ 896 (898)
T TIGR02103 856 TGLELHAVQQA---SGDESVAKS-V-------YSA--ANGTFTVPAWTTAVFVL 896 (898)
T ss_pred CcEEEEecccc---cCccccccc-e-------eec--cCCEEEEcCcEEEEEEe
Confidence 34665422110 111111100 0 000 01368999999999986
No 18
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=3.2e-62 Score=569.13 Aligned_cols=494 Identities=17% Similarity=0.230 Sum_probs=329.8
Q ss_pred cCCcEEcCCcEEEEEeCCCcCeEEEEeecCCCCC----cccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCC-
Q 004765 90 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS- 164 (732)
Q Consensus 90 ~~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~~----~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~- 164 (732)
+||+++.++|++|++|||+|++|.|+. |++++. ..++|. .+.|+|++++++.. +|..|+|+|....
T Consensus 214 ~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~-------~G~~Y~Y~V~v~~p 284 (970)
T PLN02877 214 PLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSW-------EGCYYVYEVSVYHP 284 (970)
T ss_pred CCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCC-------CCCeeEEEEeeccc
Confidence 699999999999999999999999998 666532 235786 67999999999754 4669999997421
Q ss_pred --Cc---ccccCcccceeccCCCCCCCccEEeCCCc--cccccccC---CCC--CCCCCceEEEEecCCCCCC------C
Q 004765 165 --GI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQH---PQP--KKPKSLRIYEAHVGMSSTE------P 226 (732)
Q Consensus 165 --~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~--~~~~~~~IYE~hv~~~~~~------~ 226 (732)
|. ....|||++....+ +. .+++.|+.. ..+..|.. ++| ..+++++|||+|||+||.. .
T Consensus 285 ~~g~~~~~~v~DPYA~als~n-g~---~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~ 360 (970)
T PLN02877 285 STGKVETCYANDPYARGLSAD-GR---RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPD 360 (970)
T ss_pred CCCcccccccCCccceEEecC-CC---ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcC
Confidence 22 24689999887643 22 477777642 13445753 233 2468999999999999853 2
Q ss_pred CCCcHHhHHHh------hccccccCCccEEEECCcccCCC-------------------------------------CCC
Q 004765 227 IINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY-------------------------------------YAS 263 (732)
Q Consensus 227 ~~g~~~~~~~~------~L~ylk~LGv~~I~L~Pi~e~~~-------------------------------------~~~ 263 (732)
..|+|.+|++. .|+|||+||||||+|||+++++. ..+
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yN 440 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYN 440 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCC
Confidence 35999999942 36666777999999999998743 257
Q ss_pred CCCccccccCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEecccccCCCcccc-ccCCCCCCCCcccc-CCCCCc
Q 004765 264 FGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-LNMFDGTDGHYFHS-GSRGYH 334 (732)
Q Consensus 264 ~GY~~~~~~a~d~~~Gt-------~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~-~~~~dg~~~~yf~~-~~~g~~ 334 (732)
|||+|.+||+|+++|+| ..|||+||++||++||+||||||+||++..++++ .+.++...+.||+. +..|..
T Consensus 441 WGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~ 520 (970)
T PLN02877 441 WGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFI 520 (970)
T ss_pred CCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCc
Confidence 99999999999999998 3589999999999999999999999998766544 35677777666654 333321
Q ss_pred cc-CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHH
Q 004765 335 WM-WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 413 (732)
Q Consensus 335 ~~-w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 413 (732)
.. -+....+.++++||++|+++++||++||||||||||++.++... .|..+++
T Consensus 521 ~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~--------------------------tm~~~~~ 574 (970)
T PLN02877 521 ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKR--------------------------TMVRAKD 574 (970)
T ss_pred ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHH--------------------------HHHHHHH
Confidence 11 12244577999999999999999999999999999999987322 3445555
Q ss_pred hhhcc--------CCCEEEEEecCCCCC--Ccee--cccc-----CCcc-cCcccchhhHH-------------------
Q 004765 414 MIHGL--------YPEAVSIGEDVSGMP--TFCI--PVQD-----GGVG-FDYRLQMAIAD------------------- 456 (732)
Q Consensus 414 ~v~~~--------~p~~~~iaE~~~~~p--~~~~--~~~~-----gg~g-fd~~~~~~~~~------------------- 456 (732)
.++++ .|+++++||.|.... ...+ ...+ .|+| |+-+++.++..
T Consensus 575 ~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~ 654 (970)
T PLN02877 575 ALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQ 654 (970)
T ss_pred HHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccC
Confidence 55555 388999999996321 1000 0000 1222 22222221110
Q ss_pred ---------------------HHHHHHhcCCchhhh---------h-hh--hh-hhccc-ccccceeecccccccccccc
Q 004765 457 ---------------------KWIELLKKRDEDWKM---------G-AI--VH-TMTNR-RWLEKCVAYAESHDQALVGD 501 (732)
Q Consensus 457 ---------------------~~~~~l~~~~~~~~~---------~-~~--~~-~~~~~-~~~~~~v~~~esHD~~r~g~ 501 (732)
.+...+.+...++.. + ++ +. ...++ ..+..+|||+++||+..+-|
T Consensus 655 pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D 734 (970)
T PLN02877 655 PNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFD 734 (970)
T ss_pred CcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHH
Confidence 000000000000000 0 00 00 00011 23567899999999987765
Q ss_pred cchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCC
Q 004765 502 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 581 (732)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn 581 (732)
+-. ...+.....+...+..+++.++.++.+|+|+| .+|+||...+-.+
T Consensus 735 ~l~--------------~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~-haG~E~lRSK~~d----------------- 782 (970)
T PLN02877 735 IIS--------------LKTPMEISVDERCRINHLATSIIALSQGIPFF-HAGDEILRSKSLD----------------- 782 (970)
T ss_pred HHH--------------hhcCCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchhhhcCCCCC-----------------
Confidence 421 11111122345667889999999999999988 9999999976432
Q ss_pred CCCCcc--cCcccCCCCcc---------ccc-----------------------cHHHHHHHHHHHHHHHHhCCCCCCc-
Q 004765 582 NFSYDK--CRRRFDLGDAD---------YLR-----------------------YRGMQEFDRAMQHLEEKYGFMTSEH- 626 (732)
Q Consensus 582 ~~s~~~--~r~~~~w~~~~---------~~~-----------------------~~~l~~f~r~L~~LR~~~~~l~~g~- 626 (732)
.+||.. .-+.++|.... ..+ .....+++|+||+||+++|+++-+.
T Consensus 783 ~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~ 862 (970)
T PLN02877 783 RDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTA 862 (970)
T ss_pred CCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCH
Confidence 233332 23355565411 001 1456889999999999999987441
Q ss_pred ----EEEecccC----CCcEEEEEe-----------------CcEEEEEEcCC
Q 004765 627 ----QYVSRKDE----GDRVIVFER-----------------GNLVFVFNFHW 654 (732)
Q Consensus 627 ----~~i~~~~~----~~~vlaf~R-----------------~~llvv~Nf~~ 654 (732)
..+.+.+. ..+||+|.- +.++||+|-++
T Consensus 863 ~~I~~~v~F~~~g~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~ 915 (970)
T PLN02877 863 NAIQERVRFHNTGPSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARP 915 (970)
T ss_pred HHHHhhcEEeccCCCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCC
Confidence 11222222 347999864 23899999885
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.6e-62 Score=594.30 Aligned_cols=477 Identities=18% Similarity=0.270 Sum_probs=332.4
Q ss_pred ccCCcEEcCCcEEEEEeCCCcCeEEEEeecCCCCCc---ccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004765 89 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 165 (732)
Q Consensus 89 ~~~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~~~---~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~ 165 (732)
.+||++..++||+|+||||+|++|.|+. |+.|... ..+|....+|+|+++|++.. +|..|+|+++++.+
T Consensus 14 ~plGA~~~~~gv~F~v~ap~A~~V~L~l-f~~~~~~~~~~~~l~~~~g~vW~~~i~~~~-------~g~~Ygyrv~g~~~ 85 (1221)
T PRK14510 14 EPLGAVPDGGGVNLALFSGAAERVEFCL-FDLWGVREEARIKLPGRTGDVWHGFIVGVG-------PGARYGNRQEGPGG 85 (1221)
T ss_pred CCCceEEECCeEEEEEECCCCCEEEEEE-EECCCCCeeEEEECCCCcCCEEEEEEccCC-------CCcEEEEEeccCCC
Confidence 4799999999999999999999999996 8888643 35777778999999999754 46799999987543
Q ss_pred c---------ccccCcccceeccCCCC--CCC------------ccEEeCCCc--cccccccCCCC-C-CCCCceEEEEe
Q 004765 166 I---------KDSIPAWIKFSVQAPGE--IPY------------NGIYYDPPE--EEKYVFQHPQP-K-KPKSLRIYEAH 218 (732)
Q Consensus 166 ~---------~~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~--~~~~~~~~~~~-~-~~~~~~IYE~h 218 (732)
. ...++||++.......- ..| .+.+.+|.. ...|.|...++ . .+.+.+|||+|
T Consensus 86 p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~h 165 (1221)
T PRK14510 86 PGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMN 165 (1221)
T ss_pred cccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEc
Confidence 1 24688999877643210 000 112222210 11478865443 3 34789999999
Q ss_pred cCCCCCC------CCCCcHHhHHH-hhccccccCCccEEEECCcccCCC---------CCCCCCccccccCCCCCCC--C
Q 004765 219 VGMSSTE------PIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCG--T 280 (732)
Q Consensus 219 v~~~~~~------~~~g~~~~~~~-~~L~ylk~LGv~~I~L~Pi~e~~~---------~~~~GY~~~~~~a~d~~~G--t 280 (732)
|+.|+.. ...|+|+++.+ ++|+|||+||||+||||||++++. .++|||++.|||+|+|+|| +
T Consensus 166 vr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~ 245 (1221)
T PRK14510 166 VRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGG 245 (1221)
T ss_pred cchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCc
Confidence 9999752 23478887762 468899999999999999999854 2469999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccc-cCCCCC-CCCccccCC---CCCcccCC-CCCCCCCCHHHHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGT-DGHYFHSGS---RGYHWMWD-SRLFNYGSWEVLRFLL 354 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~-~~~dg~-~~~yf~~~~---~g~~~~w~-~~~ln~~~~ev~~~l~ 354 (732)
.+|||+||++||++||+||||||+|||+.++..+. ..+.+. +..||+... ..+...|+ ...+|+++|+|+++|+
T Consensus 246 ~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~ 325 (1221)
T PRK14510 246 EEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPM 325 (1221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999998764331 123332 234555331 12233333 3578999999999999
Q ss_pred HHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEE-----EEecC
Q 004765 355 SNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS-----IGEDV 429 (732)
Q Consensus 355 ~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~-----iaE~~ 429 (732)
++++||++ |||||||||++.+|... ...||+.++..++++.|+.++ |||.|
T Consensus 326 d~lr~Wv~-~gVDGfRfDla~~l~r~-----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~W 381 (1221)
T PRK14510 326 DVLRSWAK-RGVDGFRLDLADELARE-----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEVW 381 (1221)
T ss_pred HHHHHHHH-hCCCEEEEechhhhccC-----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEecc
Confidence 99999999 99999999999887321 134899999999999999887 99999
Q ss_pred CCCCCceeccccCCcccC---cccchhhHHHHHHHHhcCCchhhhhhhhhhh----c----ccccccceeeccccccccc
Q 004765 430 SGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTM----T----NRRWLEKCVAYAESHDQAL 498 (732)
Q Consensus 430 ~~~p~~~~~~~~gg~gfd---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~----~~~~~~~~v~~~esHD~~r 498 (732)
...+.. +..+. |+ ..||..+.+.++.++++... ....+...+ . +.+....+|||++|||..|
T Consensus 382 d~~~~~---~~~g~--f~~~~~~~N~~frd~vr~f~~g~~~--~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~r 454 (1221)
T PRK14510 382 DDGLGG---YQYGK--FPQYWGEWNDPLRDIMRRFWLGDIG--MAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFT 454 (1221)
T ss_pred cCCCCc---cccCC--CCcceeeeccHHHHHHHHHhcCCCc--hHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchH
Confidence 653321 11111 22 23566666666777764321 011111111 1 1223456899999999998
Q ss_pred ccccchhhhcCC---hh---------HHHhhh--cCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCC
Q 004765 499 VGDKTIAFWLMD---KD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWID 564 (732)
Q Consensus 499 ~g~~~~~~~~~~---~~---------~~~~~~--~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d 564 (732)
+.+..-.....+ ++ .-++.. +.+....+.....++.|++.+++|+++|+|+| |||||+|++..
T Consensus 455 l~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~I-y~GdE~g~tq~-- 531 (1221)
T PRK14510 455 LLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPML-YYGDEAGRSQN-- 531 (1221)
T ss_pred HHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEE-ecchhcccccC--
Confidence 754311000000 00 000000 11111112223456778899999999999977 99999998652
Q ss_pred CCCCCCCCCCCcccCCCCCCC--cccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCc
Q 004765 565 FPRGDQRLPNGQFVPGNNFSY--DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH 626 (732)
Q Consensus 565 ~p~~d~~~~~~~~~~gn~~s~--~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~ 626 (732)
||+++| ..+|+.|+|... .+.|++|+|+||+|||++++|+.+.
T Consensus 532 ---------------Gn~n~y~~~~~r~~~~W~~~----~~~l~~f~k~Li~lRk~~~~L~~g~ 576 (1221)
T PRK14510 532 ---------------GNNNGYAQDNNRGTYPWGNE----DEELLSFFRRLIKLRREYGVLRQGE 576 (1221)
T ss_pred ---------------CCCCCCCCCCccccCCcccc----cHHHHHHHHHHHHHHHhChhhccCc
Confidence 555554 567889999864 3589999999999999999998764
No 20
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.7e-59 Score=541.59 Aligned_cols=461 Identities=18% Similarity=0.210 Sum_probs=311.4
Q ss_pred cCCcEEEEEeCCC---cCeEEEEeecCCCCCcccccccC----CCCEEEEEeCCC-CCCCCCCCCCCEEEEEeeCCCCcc
Q 004765 96 SDTGITYREWAPG---AKSASLIGDFNNWNPNADIMTQN----EFGVWEIFLPNN-ADGSPPIPHGSRVKIHMDTPSGIK 167 (732)
Q Consensus 96 ~~~gv~f~~WAP~---A~~V~L~gdfn~w~~~~~~m~~~----~~GvW~i~ip~~-~~g~~~i~hg~~Yk~~~~~~~~~~ 167 (732)
..+.+++|+..+. +++|.|.-...+. ....+|++. ....|+++|+.. ..+ -..|.|++...++..
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~-~~~~~m~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~F~l~~~~~~~ 89 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNE-EYLLPMEKQRSQPQVTAWRASLPLNSGQP------RRRYSFKLLWHDRQR 89 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCC-EEEEEeEEeecCCCceEEEEEEEcCCCCc------eEEEEEEEEeCCEEE
Confidence 3455888888763 5688887644432 234678753 234799999853 121 246888886543221
Q ss_pred cccCcccceeccCCCCCCCccEEeCCCcccccccc--CCCCCCCCCceEEEEecCCCCCCCC------------------
Q 004765 168 DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQ--HPQPKKPKSLRIYEAHVGMSSTEPI------------------ 227 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~IYE~hv~~~~~~~~------------------ 227 (732)
. ...- ..... .|+....|.+. .+.|.|-++.|||||+|..|.+...
T Consensus 90 ~-~~~~-g~~~~------------~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~ 155 (598)
T PRK10785 90 W-FTPQ-GFSRR------------PPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEI 155 (598)
T ss_pred E-EcCC-ceeec------------cCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcc
Confidence 1 1000 00000 11000112221 2346667999999999988842110
Q ss_pred -------------------CCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHH
Q 004765 228 -------------------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLI 288 (732)
Q Consensus 228 -------------------~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV 288 (732)
-|+|+||+ ++|||||+||||+|||+||++++ ++|||+++||++|||+|||.++|++||
T Consensus 156 ~~~~w~~~~~~~~~~~~f~GGDl~GI~-~kLdYL~~LGv~~I~L~Pif~s~--s~hgYd~~Dy~~iDp~~Gt~~df~~Lv 232 (598)
T PRK10785 156 ILRDWDEPVTAQAGGSTFYGGDLDGIS-EKLPYLKKLGVTALYLNPIFTAP--SVHKYDTEDYRHVDPQLGGDAALLRLR 232 (598)
T ss_pred cccCcCCCcccccccccccCcCHHHHH-HHHHHHHHcCCCEEEeCCcccCC--CCCCcCcccccccCcccCCHHHHHHHH
Confidence 28999999 89999999999999999999987 479999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecccccCCCccccccC-------CCCCC---CCccccCCCCCcccCC----CCCCCCCCHHHHHHHH
Q 004765 289 DKAHELGLLVLMDIVHSHASNNVLDGLNM-------FDGTD---GHYFHSGSRGYHWMWD----SRLFNYGSWEVLRFLL 354 (732)
Q Consensus 289 ~~aH~~GI~VilDvV~nH~s~~~~~~~~~-------~dg~~---~~yf~~~~~g~~~~w~----~~~ln~~~~ev~~~l~ 354 (732)
++||++||+||||+|+||++.+|+++... +.... ..||.....+....|. .++||++||+|+++|+
T Consensus 233 ~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~ 312 (598)
T PRK10785 233 HATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIY 312 (598)
T ss_pred HHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHH
Confidence 99999999999999999999988543211 11111 1244433333323342 4799999999999999
Q ss_pred H----HHHHHHHH-cCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecC
Q 004765 355 S----NARWWLEE-YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 429 (732)
Q Consensus 355 ~----~l~~Wl~e-~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~ 429 (732)
+ ++++|+++ |||||||+|+|..+... + ......+||+++++.+++.+|++++|||.|
T Consensus 313 ~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~--~----------------~~~~~~~f~~~~~~~vk~~~pd~~ligE~~ 374 (598)
T PRK10785 313 RGEDSIVRHWLKAPYNIDGWRLDVVHMLGEG--G----------------GARNNLQHVAGITQAAKEENPEAYVLGEHF 374 (598)
T ss_pred hhhhHHHHHhhcCCCCCcEEEEecHhHhccc--c----------------CccccHHHHHHHHHHHHhhCCCeEEEEecc
Confidence 5 89999997 99999999999766321 0 011245799999999999999999999998
Q ss_pred CCCCCceeccccCCcccCcccch-hhHHHHHHHHhcCCchh-----hhhhhhhhh----cccccc--cceeecccccccc
Q 004765 430 SGMPTFCIPVQDGGVGFDYRLQM-AIADKWIELLKKRDEDW-----KMGAIVHTM----TNRRWL--EKCVAYAESHDQA 497 (732)
Q Consensus 430 ~~~p~~~~~~~~gg~gfd~~~~~-~~~~~~~~~l~~~~~~~-----~~~~~~~~~----~~~~~~--~~~v~~~esHD~~ 497 (732)
..... +.. +-++|..+++ .+...+..++......+ ....+...+ ...... ...+||++|||++
T Consensus 375 ~~~~~----~l~-~~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~ 449 (598)
T PRK10785 375 GDARQ----WLQ-ADVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTA 449 (598)
T ss_pred CChhh----hcc-CccccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccc
Confidence 64221 111 1123333332 23223334443211100 111111111 111111 1246899999999
Q ss_pred cccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcc
Q 004765 498 LVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQF 577 (732)
Q Consensus 498 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~ 577 (732)
|+.+.. + ...+++|+|.+++||+||+|+| |||+|+|+.+..| |
T Consensus 450 R~~~~~------~------------------~~~~~~kla~~ll~t~pGiP~I-YYGdE~G~~g~~d-p----------- 492 (598)
T PRK10785 450 RFKTLL------G------------------GDKARMPLALVWLFTWPGVPCI-YYGDEVGLDGGND-P----------- 492 (598)
T ss_pred hhhhhh------C------------------CCHHHHHHHHHHHHhCCCCcEE-EeeeeccccCCCC-C-----------
Confidence 974320 0 1245789999999999999988 9999999965322 1
Q ss_pred cCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEe----CcEEEEEEcC
Q 004765 578 VPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFH 653 (732)
Q Consensus 578 ~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R----~~llvv~Nf~ 653 (732)
.+|++|+|.... ..+++++|+|+|++||+++++|+.|....... +++|+||.| +.++||+|++
T Consensus 493 ---------~~R~~m~W~~~~--~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~--~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 493 ---------FCRKPFPWDEAK--QDGALLALYQRMIALRKKSQALRRGGCQVLYA--EGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred ---------CccCCcCCCccc--CchHHHHHHHHHHHHHhhCcccccCcEEEEEe--CCCEEEEEEECCCCEEEEEEECC
Confidence 368999998654 35799999999999999999999886443332 356999999 5799999998
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.4e-58 Score=529.85 Aligned_cols=454 Identities=19% Similarity=0.274 Sum_probs=291.3
Q ss_pred CCCCceEEEEecCCCCCC--CCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHH
Q 004765 208 KPKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK 285 (732)
Q Consensus 208 ~~~~~~IYE~hv~~~~~~--~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k 285 (732)
|.+.++||||+|++|.+. ++.|+|+|++ ++||||++||||+||||||++++. .+|||+++||++|+|+|||.++||
T Consensus 2 W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~ 79 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGDGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFK 79 (539)
T ss_pred ccccceEEEEehhHhhcCCCCCccCHHHHH-HhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHH
Confidence 457899999999999754 4579999999 899999999999999999999875 469999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecccccCCCccccccCC---CCCCCCccccCC---------------CCCcccC----------
Q 004765 286 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF---DGTDGHYFHSGS---------------RGYHWMW---------- 337 (732)
Q Consensus 286 ~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~---dg~~~~yf~~~~---------------~g~~~~w---------- 337 (732)
+||++||++||+||||+|+||++.++++..... +.....||.... .+..|.|
T Consensus 80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~ 159 (539)
T TIGR02456 80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWH 159 (539)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEe
Confidence 999999999999999999999999885432111 111112332100 0111221
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccC-hhHHHHHHHHH
Q 004765 338 ----DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVN 412 (732)
Q Consensus 338 ----~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~ 412 (732)
+.++||+.||+||++|++++++|++ +||||||||++++|.... | +...+ .+..+||++++
T Consensus 160 ~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~-~-------------~~~~~~p~~~~f~~~~~ 224 (539)
T TIGR02456 160 RFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYERE-G-------------TSCENLPETHEFLKRLR 224 (539)
T ss_pred cccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccC-C-------------CccCCCchHHHHHHHHH
Confidence 2478999999999999999999998 899999999999885431 1 11122 23578999999
Q ss_pred HhhhccCCCEEEEEecCCCCCCceeccc-c-CCcccCcccchhhHHHHHHHHhcCCchhhhhhhhhhhcccccccceeec
Q 004765 413 DMIHGLYPEAVSIGEDVSGMPTFCIPVQ-D-GGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAY 490 (732)
Q Consensus 413 ~~v~~~~p~~~~iaE~~~~~p~~~~~~~-~-gg~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 490 (732)
+.+++.+|++++|||.+. ++..+..+. . ...++|..+++.++......+...... .............-....++|
T Consensus 225 ~~v~~~~p~~~~iaE~~~-~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~-~l~~~l~~~~~~~~~~~~~~f 302 (539)
T TIGR02456 225 KMVDREYPGRMLLAEANQ-WPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRS-PIIDILKETPDIPDSCQWCIF 302 (539)
T ss_pred HHHHHhCCCeEEEEEeCC-CHHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHH-HHHHHHHHhhhccCCCceeee
Confidence 999999999999999853 333222222 1 111455555544432222212111100 000111111101111224579
Q ss_pred ccccccccccccc------h-hhhcCChhHHHhhhc-CCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCC
Q 004765 491 AESHDQALVGDKT------I-AFWLMDKDMYDFMAL-DRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEW 562 (732)
Q Consensus 491 ~esHD~~r~g~~~------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~ 562 (732)
++|||+.|+..-+ + +.+..+......... .|. ........+++|++++++||+||+|+| |||+|+|+..-
T Consensus 303 l~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~-~s~~~~~~~~~kla~~~l~tlpG~P~I-YYG~EiGm~~~ 380 (539)
T TIGR02456 303 LRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRL-APLLDNDRRRIELLTALLLSLPGSPIL-YYGDEIGMGDN 380 (539)
T ss_pred cCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhh-hhcccccHHHHHHHHHHHHhCCCceEE-EechhhcCcCC
Confidence 9999997642100 0 000000000000000 000 001112345789999999999999988 99999999641
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCcc--------------------------------ccccHHHHHHHH
Q 004765 563 IDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD--------------------------------YLRYRGMQEFDR 610 (732)
Q Consensus 563 ~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~--------------------------------~~~~~~l~~f~r 610 (732)
.. ..+...+|.+|+|.... .....++++|+|
T Consensus 381 ~~-----------------~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr 443 (539)
T TIGR02456 381 IW-----------------LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTR 443 (539)
T ss_pred Cc-----------------cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHH
Confidence 10 01122345566665321 123467999999
Q ss_pred HHHHHHHHhCCCCCCcEEEecccCCCcEEEEEe----CcEEEEEEcCCCCcccceEEcccC-Cc-eEEEEEeCCCCCCCC
Q 004765 611 AMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLK-PG-KYKIVLDSDDPLFGG 684 (732)
Q Consensus 611 ~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R----~~llvv~Nf~~~~~~~~~~l~~~~-~g-~~~~vl~sd~~~~gg 684 (732)
+||+||+++++|..|....... .+++|++|.| +.++||+|++. + ...+.|.++. .| .+.+++.++.
T Consensus 444 ~Li~lRk~~~aL~~G~~~~l~~-~~~~v~~f~R~~~~~~vlVv~N~s~-~-~~~v~l~~~~~~~~~~~dl~~~~~----- 515 (539)
T TIGR02456 444 RVLHVRKAHPAFGRGSLTFLPT-GNRRVLAFLREYEGERVLCVFNFSR-N-PQAVELDLSEFAGRVPVELIGGAP----- 515 (539)
T ss_pred HHHHHHhcCcccccCceEEEec-CCCCEEEEEEEcCCcEEEEEEeCCC-C-CEEeeccccccccCcceecccCCc-----
Confidence 9999999999998885433222 2356999999 57999999994 2 2345554432 12 3444543211
Q ss_pred ccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEE
Q 004765 685 YKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 722 (732)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~ 722 (732)
.. ....+.++|+|||.++++|++
T Consensus 516 ---~~------------~~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 516 ---FP------------PVGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred ---cc------------cccCCcceEEECCceEEEEEe
Confidence 00 000123789999999999984
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.8e-57 Score=519.82 Aligned_cols=457 Identities=16% Similarity=0.169 Sum_probs=297.0
Q ss_pred CCCCceEEEEecCCCCC--CCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHH
Q 004765 208 KPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK 285 (732)
Q Consensus 208 ~~~~~~IYE~hv~~~~~--~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k 285 (732)
|++..+|||+|+++|++ ..+.|+|+|++ ++||||++||||+|||+||++++. ..+||+++||++|+|+|||.++|+
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~id~~~Gt~~~~~ 78 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVSPQ-KDNGYDVSDYYAINPLFGTMADFE 78 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHH-HhHHHHHHcCCCEEEECCcccCCC-CCCCCCccccCccCcccCCHHHHH
Confidence 35788999999999975 34679999999 899999999999999999999875 347999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecccccCCCccccccCCCC--CCCCccc-cCC------------CCCcccC-------------
Q 004765 286 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDG--TDGHYFH-SGS------------RGYHWMW------------- 337 (732)
Q Consensus 286 ~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg--~~~~yf~-~~~------------~g~~~~w------------- 337 (732)
+||++||++||+||||+|+||++.+|++......+ ....||. .+. .+..|.|
T Consensus 79 ~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~ 158 (543)
T TIGR02403 79 ELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFD 158 (543)
T ss_pred HHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccC
Confidence 99999999999999999999999988543322111 1112221 100 0111222
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhh
Q 004765 338 -DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIH 416 (732)
Q Consensus 338 -~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~ 416 (732)
+.++||++||+|+++|+++++||++ +||||||||+|++|.+........- .-+..+. .......+||+++++.++
T Consensus 159 ~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~--~~~~~~~-~~~~~~~~f~~~~~~~~~ 234 (543)
T TIGR02403 159 KTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEI--GDGRRFY-TDGPRVHEYLQEMNQEVF 234 (543)
T ss_pred CcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCC--CCCcccc-CCChHHHHHHHHHHHHhh
Confidence 2478999999999999999999998 7999999999999854311100000 0000000 112456789999999998
Q ss_pred ccCCCEEEEEecCCCCCCceecccc-CCcccCcccchhhHHHHHHHHhcC---Cchhhhhhhhhhhc----ccc-cccce
Q 004765 417 GLYPEAVSIGEDVSGMPTFCIPVQD-GGVGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVHTMT----NRR-WLEKC 487 (732)
Q Consensus 417 ~~~p~~~~iaE~~~~~p~~~~~~~~-gg~gfd~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~----~~~-~~~~~ 487 (732)
+ .|++++|||.+...+..+..+.. .+-.||..+++.. ....+.... ...+....+...+. ... .....
T Consensus 235 ~-~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (543)
T TIGR02403 235 G-DNDSVTVGEMSSTTIENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWN 311 (543)
T ss_pred c-cCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHhccccCcce
Confidence 8 89999999999765544433332 2233554444321 111111110 00111111111110 000 11223
Q ss_pred eecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCC
Q 004765 488 VAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPR 567 (732)
Q Consensus 488 v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~ 567 (732)
++|++|||++|+.++. ..+ . ....+.+|++.+++||+||+|+| |||+|+||.+....+-
T Consensus 312 ~~fl~NHD~~R~~s~~--------------g~~-~-----~~~~~~~k~~a~ll~tlpG~P~I-YYGdEiGm~~~~~~~~ 370 (543)
T TIGR02403 312 ALFWNNHDQPRAVSRF--------------GDD-G-----EYRVESAKMLAAAIHLLRGTPYI-YQGEEIGMTNPKFTNI 370 (543)
T ss_pred eeecCCCChhhHHHhc--------------CCc-h-----hhHHHHHHHHHHHHHHCCCCeEE-EeccccCCCCCCCCCH
Confidence 5699999999974321 000 0 00123578888889999999988 9999999975311000
Q ss_pred CCCCCCC----------------CcccCCCCCCCcccCcccCCCCccc-------------------------cccHHHH
Q 004765 568 GDQRLPN----------------GQFVPGNNFSYDKCRRRFDLGDADY-------------------------LRYRGMQ 606 (732)
Q Consensus 568 ~d~~~~~----------------~~~~~gn~~s~~~~r~~~~w~~~~~-------------------------~~~~~l~ 606 (732)
.+-.++. .....-+..+++.+|.+|+|..... ....+++
T Consensus 371 ~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll 450 (543)
T TIGR02403 371 EDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIF 450 (543)
T ss_pred HHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHH
Confidence 0000100 0000123457788999999986421 1246899
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEe----CcEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCC
Q 004765 607 EFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLF 682 (732)
Q Consensus 607 ~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~ 682 (732)
+|+|+||+||+++++|..|....... .+++|++|.| +.++||+|++. + ...+.|+.. .+.++.++++....
T Consensus 451 ~~yr~Li~lRk~~~aL~~G~~~~~~~-~~~~v~a~~R~~~~~~~lVv~N~s~-~-~~~~~l~~~-~~~~~~~~~~~~~~- 525 (543)
T TIGR02403 451 YFYQKLIALRKSEPVITDGDYQFLLP-DDPSVWAYTRTYKNQKLLVINNFYG-E-EKTIELPLD-LLSGKILLSNYEEA- 525 (543)
T ss_pred HHHHHHHHHHhhcccccCccEEEeec-CCCcEEEEEEEcCCcEEEEEEECCC-C-CeEeeCCcc-CcCceEEEecCCCc-
Confidence 99999999999999999885433222 3346999999 57999999994 2 234444322 23455566542110
Q ss_pred CCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEE
Q 004765 683 GGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 721 (732)
Q Consensus 683 gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~ 721 (732)
. . ...++|||++++|+.
T Consensus 526 ------~------------~----~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 526 ------E------------K----DAKLELKPYEAIVLL 542 (543)
T ss_pred ------C------------C----CCcEEECCceEEEEe
Confidence 0 0 145899999999985
No 23
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=3.2e-57 Score=516.87 Aligned_cols=457 Identities=17% Similarity=0.237 Sum_probs=298.5
Q ss_pred CCCCCCceEEEEecCCCCC--CCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHH
Q 004765 206 PKKPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 283 (732)
Q Consensus 206 ~~~~~~~~IYE~hv~~~~~--~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d 283 (732)
|.+.+..||||+++++|.+ ..+.|+|+|++ ++||||++||||+||||||++++. ..|||+++||++|+|+|||.+|
T Consensus 5 ~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~~~-~~~gY~~~d~~~id~~~Gt~~d 82 (551)
T PRK10933 5 PHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVSPQ-VDNGYDVANYTAIDPTYGTLDD 82 (551)
T ss_pred chhhhcCeEEEEEchHhhcCCCCCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCCCC-CCCCCCcccCCCcCcccCCHHH
Confidence 4567899999999999965 45689999999 899999999999999999998875 3589999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCC--Cccc--c------------CCCCCcccCC---------
Q 004765 284 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG--HYFH--S------------GSRGYHWMWD--------- 338 (732)
Q Consensus 284 ~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~--~yf~--~------------~~~g~~~~w~--------- 338 (732)
|++||++||++||+||||+|+||+|.+|++.....+...+ .||. . ...+..|.|+
T Consensus 83 ~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~ 162 (551)
T PRK10933 83 FDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLH 162 (551)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEee
Confidence 9999999999999999999999999988654332211111 1221 0 0112223332
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHH
Q 004765 339 -----SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 413 (732)
Q Consensus 339 -----~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 413 (732)
.++||++||+|+++|++++++|++ +||||||+|+|++|... .++..........++ ....+..+||+++++
T Consensus 163 ~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 238 (551)
T PRK10933 163 LFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFY--TDGPRAHEFLQEMNR 238 (551)
T ss_pred cccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcC-CCCCCCccccccccc--CCChHHHHHHHHHHH
Confidence 479999999999999999999997 99999999999999654 111110000111111 112456789999988
Q ss_pred hhhccCCCEEEEEecCCCCCCceecccc-CCcccCcccchhhHHHHHHHHhcC---Cchhhhhhhhhh-------hcccc
Q 004765 414 MIHGLYPEAVSIGEDVSGMPTFCIPVQD-GGVGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVHT-------MTNRR 482 (732)
Q Consensus 414 ~v~~~~p~~~~iaE~~~~~p~~~~~~~~-gg~gfd~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~-------~~~~~ 482 (732)
.+.. .+++++|||.+...+..+..+.. .+-.++..+++. .....++... ...+....+... +....
T Consensus 239 ~~~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (551)
T PRK10933 239 DVFT-PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFH--HLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHNVA 315 (551)
T ss_pred Hhhc-ccCcEEEEeecCCCHHHHHHhhcccCCeeeeEecHH--HhhhhhccCCcccccccCHHHHHHHHHHHHHhhcccC
Confidence 7643 34789999998655444433321 121122222221 1111222110 011111111111 11112
Q ss_pred cccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCC
Q 004765 483 WLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEW 562 (732)
Q Consensus 483 ~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~ 562 (732)
| ...|++|||++|+.++. ..++ ....+.+|++.+++||+||+|+| |||+|+||.+.
T Consensus 316 ~---~~~fl~NHD~~R~~sr~--------------g~~~------~~~~~~aklla~ll~tlpG~P~I-YyGeEiGm~~~ 371 (551)
T PRK10933 316 W---NALFWCNHDQPRIVSRF--------------GDEG------EYRVPAAKMLAMVLHGMQGTPYI-YQGEEIGMTNP 371 (551)
T ss_pred e---eccccCCCCcccHHHHc--------------CCch------hHHHHHHHHHHHHHHhCCCceEE-EeecccCCCCC
Confidence 2 24689999999974321 1110 11234578889999999999988 99999999762
Q ss_pred CCCCC-CCCCCCCC----------------cccCCCCCCCcccCcccCCCCccc-------------------------c
Q 004765 563 IDFPR-GDQRLPNG----------------QFVPGNNFSYDKCRRRFDLGDADY-------------------------L 600 (732)
Q Consensus 563 ~d~p~-~d~~~~~~----------------~~~~gn~~s~~~~r~~~~w~~~~~-------------------------~ 600 (732)
.+++ .+..++.. ....-+..+++.+|.+|+|..... .
T Consensus 372 -~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~ 450 (551)
T PRK10933 372 -HFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALA 450 (551)
T ss_pred -CCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhc
Confidence 1111 00011100 000123357888999999987542 1
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEe----CcEEEEEEcCCCCcccceEEcccCCceEEEEEe
Q 004765 601 RYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLD 676 (732)
Q Consensus 601 ~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~ 676 (732)
...++++|+|+||+||+++++|..|...... ..++.|++|.| +.++||+|++. . ...+.++ ...+.|+.+|+
T Consensus 451 ~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~-~~~~~v~af~R~~~~~~~lvv~N~s~-~-~~~~~~~-~~~~~~~~~l~ 526 (551)
T PRK10933 451 DEDSVFYTYQKLIALRKQEPVLTWGDYQDLL-PNHPSLWCYRREWQGQTLLVIANLSR-E-PQPWQPG-QMRGNWQLLMH 526 (551)
T ss_pred CcccHHHHHHHHHHHhhcChhhccceeEEec-cCCCcEEEEEEEcCCcEEEEEEECCC-C-CeeeecC-cccCCceEEee
Confidence 2368999999999999999999987543322 23456999999 57999999993 2 2334433 23467888876
Q ss_pred CCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEE
Q 004765 677 SDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 722 (732)
Q Consensus 677 sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~ 722 (732)
+.... . .. ...++|||.+++|++.
T Consensus 527 ~~~~~------~--------------~~--~~~~~L~p~~~~~~~~ 550 (551)
T PRK10933 527 NYEEA------S--------------PQ--PCAMTLRPFEAVWWLQ 550 (551)
T ss_pred cCccc------c--------------CC--CCcEEECCCeEEEEEe
Confidence 42100 0 00 0348899999999874
No 24
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-54 Score=491.59 Aligned_cols=552 Identities=20% Similarity=0.274 Sum_probs=350.7
Q ss_pred cccCCcEE---cCCcEEEEEeCCCcCeEEEEe-ecCCCCCc--ccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004765 88 YEKFGFIR---SDTGITYREWAPGAKSASLIG-DFNNWNPN--ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 161 (732)
Q Consensus 88 y~~~G~~~---~~~gv~f~~WAP~A~~V~L~g-dfn~w~~~--~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~ 161 (732)
.-++|++. ...|+.|.+|+.+|+.|.|+. |...-... ..++....+.+|++.+|+.. .|+.|.|++.
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~-------~g~~y~yr~~ 89 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAK-------PGQVYGYRVH 89 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCc-------eeeEEEEecC
Confidence 34799997 448899999999999999995 33222222 25676666779999999754 4679999987
Q ss_pred CCC----C-----cccccCcccceeccCCCC-------------------------CCCccEEeCCCccccccccCCC-C
Q 004765 162 TPS----G-----IKDSIPAWIKFSVQAPGE-------------------------IPYNGIYYDPPEEEKYVFQHPQ-P 206 (732)
Q Consensus 162 ~~~----~-----~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-~ 206 (732)
++. | ....++||++........ ...++++.++. +.|+.++ |
T Consensus 90 g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~----~~w~~~~~~ 165 (697)
T COG1523 90 GPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPL----FDWENDKPP 165 (697)
T ss_pred CCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccc----cccccCCCC
Confidence 742 2 123567888766543210 11234555552 6787653 3
Q ss_pred CC-CCCceEEEEecCCCC-CC-----CCCCcHHhHHHhh--ccccccCCccEEEECCcccCC---------CCCCCCCcc
Q 004765 207 KK-PKSLRIYEAHVGMSS-TE-----PIINTYANFRDDV--LPRIKRLGYNAVQIMAVQEHS---------YYASFGYHV 268 (732)
Q Consensus 207 ~~-~~~~~IYE~hv~~~~-~~-----~~~g~~~~~~~~~--L~ylk~LGv~~I~L~Pi~e~~---------~~~~~GY~~ 268 (732)
.. ++++||||+|||.|| .. ...|||.+++ +. |+|||+||||||+||||+.+. ...+|||+|
T Consensus 166 ~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~-~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 166 RIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLA-EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCccceEEEEeeecccccCCCCCchhhccceehhc-cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 33 489999999999998 33 3459999999 66 999999999999999999863 245799999
Q ss_pred ccccCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEecccccCCCcccc-ccCCCCCCCCccc-cCCCCC--cccC
Q 004765 269 TNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-LNMFDGTDGHYFH-SGSRGY--HWMW 337 (732)
Q Consensus 269 ~~~~a~d~~~Gt-------~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~-~~~~dg~~~~yf~-~~~~g~--~~~w 337 (732)
.+||+|+++|.+ ..|||.||+++|++||+||||||+|||+.....+ ...|+|.++.||+ .++.|+ ++..
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TG 324 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTG 324 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCc
Confidence 999999999986 3599999999999999999999999998643233 4578898877544 444454 3556
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhc
Q 004765 338 DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHG 417 (732)
Q Consensus 338 ~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~ 417 (732)
+++.+|.++|+||++|+|+|+||++||||||||||.++.+.....+. . .+. + ++..+. . ..
T Consensus 325 cGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~----~----------~~~-~--l~~~~~-~-~p 385 (697)
T COG1523 325 CGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLF----D----------INA-N--LFLAGE-G-DP 385 (697)
T ss_pred cCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccccc----c----------cCc-c--hhhhcc-C-Cc
Confidence 77899999999999999999999999999999999998764331100 0 000 0 111110 0 01
Q ss_pred cCCCEEEEEecCCCCCCceeccccCCcccC--cc---cchhhHHHHHHHHhcCCchhhhhhhhhhhc--------ccccc
Q 004765 418 LYPEAVSIGEDVSGMPTFCIPVQDGGVGFD--YR---LQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWL 484 (732)
Q Consensus 418 ~~p~~~~iaE~~~~~p~~~~~~~~gg~gfd--~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~ 484 (732)
..-...+|||.|.-.+.. +.-|. |. ++ |+-.+.+....++.+.... .+.+...+. ..+-+
T Consensus 386 ~l~~~kliAepwD~g~~g---yqvG~--Fpd~~~~aewng~~rD~vr~F~~G~~~~--~~~~a~rl~gS~d~~~~~~~~p 458 (697)
T COG1523 386 VLSGVKLIAEPWDIGPGG---YQVGN--FPDSPRWAEWNGRFRDDVRRFWRGDAGL--VGEFAKRLAGSSDLYKRNGRRP 458 (697)
T ss_pred cccCceeeecchhhcCCC---ccccc--CCCccchhhhCCcccccccceeeCCCcc--HHHHHHHhhcCcchhhccCCCc
Confidence 122344888888543311 11111 22 22 2222333333333332110 111111111 12345
Q ss_pred cceeecccccccccccccchhhhcC---Chh---------HHHh-hhcCCCCCccchhHHHHH-HHHHHHHHhcCCcccc
Q 004765 485 EKCVAYAESHDQALVGDKTIAFWLM---DKD---------MYDF-MALDRPSTPRIDRGIALH-KMIRLVTMGLGGEAYL 550 (732)
Q Consensus 485 ~~~v~~~esHD~~r~g~~~~~~~~~---~~~---------~~~~-~~~~~~~~~~~~~~~~~~-kla~~l~~t~pG~p~l 550 (732)
..+|||+.+||.-.+-|...-...- +.+ ..++ +.......+.+..+.... +...+.++...|+|.+
T Consensus 459 ~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml 538 (697)
T COG1523 459 SQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPML 538 (697)
T ss_pred cceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccc
Confidence 6789999999986653321000000 000 0000 111122233343333332 3334446677899865
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCc--ccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCC-cE
Q 004765 551 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYD--KCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSE-HQ 627 (732)
Q Consensus 551 ~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~s~~--~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g-~~ 627 (732)
-+|+|+|+..+ ||+++|. ..-+.++|.. ..++.+.+|.+.||+|||++++++.. +.
T Consensus 539 -~~gDe~~rtq~-----------------gnnNsYcqdn~inwlDW~~---~~~~~l~~f~~~lIaLRk~~~af~~~~f~ 597 (697)
T COG1523 539 -LAGDEFGRTQY-----------------GNNNAYCQDNEINWLDWST---EANNDLVEFTKGLIALRKAHPAFRRRSFF 597 (697)
T ss_pred -ccccccccccc-----------------cccccccCCcccceeccCc---cccHHHHHHHHHHHHHhhhcchhcccchh
Confidence 99999999663 7788885 4566888882 46789999999999999999988752 11
Q ss_pred E----------E----------ecccCCCcEEEEEe-C---cEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCCC
Q 004765 628 Y----------V----------SRKDEGDRVIVFER-G---NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFG 683 (732)
Q Consensus 628 ~----------i----------~~~~~~~~vlaf~R-~---~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~g 683 (732)
. . .+.......+++.. + .++|++|-.. ....++++... ++|..++++....
T Consensus 598 ~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~--~~~~~~lp~~~-~~~~~~~~~~~~~-- 672 (697)
T COG1523 598 EGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGDKERLLVLINATA--EPVEFELPEDE-GKWAGLVDTSTPP-- 672 (697)
T ss_pred hccCCCcccceeccCCeeechhcccCCCCceEEEEecCCCccEEEEecCCc--cccceeccccc-CcceeeecccCCC--
Confidence 1 1 11112233455544 3 7999999663 23456665443 6677776543211
Q ss_pred CccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEEe
Q 004765 684 GYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 723 (732)
Q Consensus 684 g~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~~ 723 (732)
+. . ..++.++++|+.||...
T Consensus 673 ~~----------------~----~~~~~~~~~s~~vl~~~ 692 (697)
T COG1523 673 GF----------------D----IREVSLPGRSVLVLTRR 692 (697)
T ss_pred Cc----------------c----cceeecCCcEEEEEeec
Confidence 00 0 01588999999998754
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=4.6e-53 Score=486.77 Aligned_cols=370 Identities=17% Similarity=0.224 Sum_probs=253.6
Q ss_pred CCCCCCCCceEEEEecCCCCCCC------------C--------CCcHHhHHHhhccccccCCccEEEECCcccCC----
Q 004765 204 PQPKKPKSLRIYEAHVGMSSTEP------------I--------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHS---- 259 (732)
Q Consensus 204 ~~~~~~~~~~IYE~hv~~~~~~~------------~--------~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~---- 259 (732)
+.|.++++.+||+|.+..|.+.+ + -|+|+|++ ++||||++||||+|||+||+++.
T Consensus 182 ~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~-~kLdyl~~LGv~aIwlsPi~~~~~~~~ 260 (683)
T PRK09505 182 AAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLT-EKLDYLQQLGVNALWISSPLEQIHGWV 260 (683)
T ss_pred CCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHH-HhhHHHHHcCCCEEEeCcccccccccc
Confidence 34556789999999999985321 1 28999999 89999999999999999999872
Q ss_pred ---------CCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcccc-----c-cCC------
Q 004765 260 ---------YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-----L-NMF------ 318 (732)
Q Consensus 260 ---------~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~-----~-~~~------ 318 (732)
.+++|||++.||+.||++|||.+|||+||++||++||+||||+|+||++..+... . ..+
T Consensus 261 ~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~ 340 (683)
T PRK09505 261 GGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDEN 340 (683)
T ss_pred ccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcccc
Confidence 3578999999999999999999999999999999999999999999999532100 0 000
Q ss_pred -CCCC----------CCccccC--------CCCCccc----C---------------------CCCCCCCC---------
Q 004765 319 -DGTD----------GHYFHSG--------SRGYHWM----W---------------------DSRLFNYG--------- 345 (732)
Q Consensus 319 -dg~~----------~~yf~~~--------~~g~~~~----w---------------------~~~~ln~~--------- 345 (732)
.+.. +.+|+.. ....... | ..++||.+
T Consensus 341 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~ 420 (683)
T PRK09505 341 KKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPV 420 (683)
T ss_pred ccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccch
Confidence 0000 1111110 0001101 1 12455554
Q ss_pred --------------CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHH
Q 004765 346 --------------SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLV 411 (732)
Q Consensus 346 --------------~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 411 (732)
||+|+++|++++++|++++||||||+|+|++|. .+||+++
T Consensus 421 f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~--------------------------~~FW~~~ 474 (683)
T PRK09505 421 FYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVE--------------------------LPAWQQL 474 (683)
T ss_pred hhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCC--------------------------HHHHHHH
Confidence 569999999999999999999999999999983 2377777
Q ss_pred HHhh-------hccCC-------CEEEEEecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhcCCchhhhhhhhhh
Q 004765 412 NDMI-------HGLYP-------EAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHT 477 (732)
Q Consensus 412 ~~~v-------~~~~p-------~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (732)
++.+ ++.+| ++++|||.|...+... .+.. -+||..+++.+.....+.+... ..+..++..
T Consensus 475 ~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~-~y~~--~~fDsv~NF~~~~~~~~~~~~~---~~l~~~~~~ 548 (683)
T PRK09505 475 KQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKS-DYYR--HGFDAMINFDYQEQAAKAVDCL---AQMDPTYQQ 548 (683)
T ss_pred HHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhhH-HHHh--hcCccccCchHHHHHHHHHHHH---HHHHHHHHH
Confidence 6665 34444 4899999997544322 2222 2456555555443322222110 011111111
Q ss_pred hcccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccc
Q 004765 478 MTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEF 557 (732)
Q Consensus 478 ~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~ 557 (732)
+....-....++|++|||+.|+.+.. . ..+++|+|.+++|++||+|+| |||+|+
T Consensus 549 ~~~~~~~~~~l~FLdNHDt~Rf~s~~---------------~----------~~~~~klAaall~tlpGiP~I-YYGdEi 602 (683)
T PRK09505 549 MAEKLQDFNVLSYLSSHDTRLFFEGG---------------Q----------SYAKQRRAAELLLLAPGAVQI-YYGDES 602 (683)
T ss_pred HhhhcCccceeecccCCChhhhhhhc---------------C----------chHHHHHHHHHHHhCCCCcEE-Eechhh
Confidence 11111112357899999999974321 0 014678899999999999988 999999
Q ss_pred cCCCCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCc
Q 004765 558 GHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDR 637 (732)
Q Consensus 558 G~~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~ 637 (732)
|+..-.. + ......+|++|+|.... ....+|++|+|+|++||+++|+|+.|..... ..++
T Consensus 603 Gm~gg~~---------------g-~DP~~~~R~~M~W~~~~-~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l---~~~~ 662 (683)
T PRK09505 603 ARPFGPT---------------G-SDPLQGTRSDMNWQEVS-GKSAALLAHWQKLGQFRARHPAIGAGKQTTL---SLKQ 662 (683)
T ss_pred CccCCCC---------------C-CCCcccccccCCccccc-cchHHHHHHHHHHHHHHhhCHHhhCCceEEe---ccCC
Confidence 9964210 0 11122478999998632 2456899999999999999999998854432 2357
Q ss_pred EEEEEe----CcEEEEEEc
Q 004765 638 VIVFER----GNLVFVFNF 652 (732)
Q Consensus 638 vlaf~R----~~llvv~Nf 652 (732)
+++|.| +.++||+|=
T Consensus 663 ~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 663 YYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred EEEEEEEeCCCEEEEEEeC
Confidence 999999 578888883
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=2.5e-51 Score=464.50 Aligned_cols=376 Identities=18% Similarity=0.194 Sum_probs=259.3
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCC-CCCCCCcccccc---------CCCCCCCCHHHHHHHHHHHHHcCCEE
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-YASFGYHVTNFF---------APSSRCGTPDDLKSLIDKAHELGLLV 298 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~-~~~~GY~~~~~~---------a~d~~~Gt~~d~k~LV~~aH~~GI~V 298 (732)
.+|++|+ ++||||++||||+|||+||++++. ..+|||+++||| +|+|+|||.+|||+||++||++||+|
T Consensus 19 ~~~~~I~-~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLA-ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHH-HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 4678999 899999999999999999999873 457999999999 79999999999999999999999999
Q ss_pred EEEecccccCCCcc--ccc----------------------cCCC--CCCC-------CccccCCCC-------------
Q 004765 299 LMDIVHSHASNNVL--DGL----------------------NMFD--GTDG-------HYFHSGSRG------------- 332 (732)
Q Consensus 299 ilDvV~nH~s~~~~--~~~----------------------~~~d--g~~~-------~yf~~~~~g------------- 332 (732)
|||+|+||++.... +.. ..|+ +..+ .|++..+..
T Consensus 98 i~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
T PRK09441 98 YADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKI 177 (479)
T ss_pred EEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEe
Confidence 99999999996432 110 0010 1000 122111100
Q ss_pred --CcccC--------------CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCccccc
Q 004765 333 --YHWMW--------------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 396 (732)
Q Consensus 333 --~~~~w--------------~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~ 396 (732)
....| ..++||++||+|+++|++++++|++++||||||+|+|++|.
T Consensus 178 ~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~------------------ 239 (479)
T PRK09441 178 VGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID------------------ 239 (479)
T ss_pred cCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC------------------
Confidence 00112 14699999999999999999999999999999999999983
Q ss_pred CcccChhHHHHHHHHHHhhhccC-CCEEEEEecCCCCCCceeccccC----CcccCcccchhhHHHHHHHHhcCCchhhh
Q 004765 397 GFATDVDAVVYLMLVNDMIHGLY-PEAVSIGEDVSGMPTFCIPVQDG----GVGFDYRLQMAIADKWIELLKKRDEDWKM 471 (732)
Q Consensus 397 g~~~~~~~~~~l~~~~~~v~~~~-p~~~~iaE~~~~~p~~~~~~~~g----g~gfd~~~~~~~~~~~~~~l~~~~~~~~~ 471 (732)
.+||+.+++.+++.. |++++|||.|.+.+..+..+..+ ...|||.++..+.+.+ ... ....+
T Consensus 240 --------~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~----~~~-~~~~l 306 (479)
T PRK09441 240 --------AWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEAS----KQG-RDYDM 306 (479)
T ss_pred --------HHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHH----hcC-Cccch
Confidence 248999999998765 69999999998877554444332 2368888776654432 211 11122
Q ss_pred hhhhhhhcccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcC-Ccccc
Q 004765 472 GAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYL 550 (732)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~p-G~p~l 550 (732)
..+.........+...++|++|||+.|+.... . .. .....++|.+++||+| |+|+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~FldNHD~~R~~~~~------~---------~~--------~~~~~~lA~a~llT~p~GiP~I 363 (479)
T PRK09441 307 RNIFDGTLVEADPFHAVTFVDNHDTQPGQALE------S---------PV--------EPWFKPLAYALILLREEGYPCV 363 (479)
T ss_pred HhhhCcchhhcCcccceeeeccccCCCccccc------c---------cc--------cccchHHHHHHHHhCCCCceee
Confidence 22221111123455678999999999985321 0 00 0112478899999999 99988
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEe
Q 004765 551 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVS 630 (732)
Q Consensus 551 ~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~ 630 (732)
|||+|+|+..-.+ ...+++++|+|++||+++. .|.....
T Consensus 364 -YYGdE~g~~g~~~-------------------------------------~~~l~~~i~~Li~lRk~~~---~G~~~~~ 402 (479)
T PRK09441 364 -FYGDYYGASGYYI-------------------------------------DMPFKEKLDKLLLARKNFA---YGEQTDY 402 (479)
T ss_pred -EeccccCCCCCcc-------------------------------------cchHHHHHHHHHHHHHHhC---CCCeeEe
Confidence 9999999853100 1358999999999999964 3433322
Q ss_pred cccCCCcEEEEEe------CcEEEEEEcCCCCcccceEEcccC-CceEEEEEeCCCCCCCCccccCCCcceeecccccCC
Q 004765 631 RKDEGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCLK-PGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDD 703 (732)
Q Consensus 631 ~~~~~~~vlaf~R------~~llvv~Nf~~~~~~~~~~l~~~~-~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~ 703 (732)
. .+++++||.| +.+|||+|.+. .+...+.++... .+.|++++..... .. + ..
T Consensus 403 ~--~~~~~~~~~R~~~~~~~~vvvvinn~~-~~~~~~~~~~~~~~~~~~d~~~~~~~------------~~-~-----~~ 461 (479)
T PRK09441 403 F--DHPNCIGWTRSGDEENPGLAVVISNGD-AGEKTMEVGENYAGKTWRDYTGNRQE------------TV-T-----ID 461 (479)
T ss_pred e--cCCCEEEEEEecCCCCccEEEEEECCC-CCcEEEEeCccCCCCEeEhhhCCCCC------------eE-E-----EC
Confidence 2 3467999999 24888898873 232335554332 3557776642110 00 0 01
Q ss_pred CCeEEEEEecCcEEEEEE
Q 004765 704 QPHSFLVYAPSRTAVVYA 721 (732)
Q Consensus 704 ~~~~~~l~lp~~s~~vl~ 721 (732)
..+.++++||++|+.||.
T Consensus 462 ~~G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 462 EDGWGTFPVNGGSVSVWV 479 (479)
T ss_pred CCCeEEEEECCceEEEeC
Confidence 234689999999999973
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=5.3e-46 Score=397.87 Aligned_cols=278 Identities=24% Similarity=0.339 Sum_probs=195.6
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
|||+||+ ++|||||+||||+||||||++++. ++|||+|+||++|+|+|||.+|||+||++||++||+||||+|+||++
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 8999999 899999999999999999999886 78999999999999999999999999999999999999999999999
Q ss_pred CCcccc---ccCCCCCCCCccc-------------cCCCCCccc-----------CCCCCCCCCCHHHHHHHHHHHHHHH
Q 004765 309 NNVLDG---LNMFDGTDGHYFH-------------SGSRGYHWM-----------WDSRLFNYGSWEVLRFLLSNARWWL 361 (732)
Q Consensus 309 ~~~~~~---~~~~dg~~~~yf~-------------~~~~g~~~~-----------w~~~~ln~~~~ev~~~l~~~l~~Wl 361 (732)
.++.+. ....+.....|+. ....+..+. .+.++||++||+||++|++++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~ 158 (316)
T PF00128_consen 79 DDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI 158 (316)
T ss_dssp TTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh
Confidence 998542 1112211222222 001111111 1346899999999999999999999
Q ss_pred HHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccc-
Q 004765 362 EEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQ- 440 (732)
Q Consensus 362 ~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~- 440 (732)
+ +||||||+|++++|.. ++|+++++.+++..|++++|||.+.+....+....
T Consensus 159 ~-~giDGfR~D~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~ 211 (316)
T PF00128_consen 159 E-EGIDGFRLDAAKHIPK--------------------------EFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAY 211 (316)
T ss_dssp H-TTESEEEETTGGGSSH--------------------------HHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHH
T ss_pred h-ceEeEEEEccccccch--------------------------hhHHHHhhhhhhhccccceeeeeccCCccccchhhh
Confidence 9 6799999999998832 48999999999988999999999976543222221
Q ss_pred cCCcccCcccchhhHHHHHHHHh--cCCchhhhhhhhh----hhcccccccceeecccccccccccccchhhhcCChhHH
Q 004765 441 DGGVGFDYRLQMAIADKWIELLK--KRDEDWKMGAIVH----TMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 514 (732)
Q Consensus 441 ~gg~gfd~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~----~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~ 514 (732)
.+..+.+..+++... .+...+. ..........+.. ...........++|++|||+.|+.++.-
T Consensus 212 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~---------- 280 (316)
T PF00128_consen 212 DGYFDLDSVFDFPDY-GLRSSFFDFWRHGDGDASDLANWLSSWQSSYPDPYRAVNFLENHDTPRFASRFG---------- 280 (316)
T ss_dssp HGTTSHSEEEHHHHH-HHHHHHHHHHTTTSSHHHHHHHHHHHHHHHSTTGGGEEEESSHTTSSTHHHHTT----------
T ss_pred ccccccchhhccccc-ccccchhhhhccccchhhhhhhhhhhhhhhhcccceeeecccccccccchhhhc----------
Confidence 122222211111111 1111111 0111111111111 1111222457899999999999743210
Q ss_pred HhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCC
Q 004765 515 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 561 (732)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~ 561 (732)
....+++++.+++||+||+|+| |||+|+|+.+
T Consensus 281 --------------~~~~~~~~a~~~ll~~pG~P~i-y~G~E~g~~~ 312 (316)
T PF00128_consen 281 --------------NNRDRLKLALAFLLTSPGIPMI-YYGDEIGMTG 312 (316)
T ss_dssp --------------THHHHHHHHHHHHHHSSSEEEE-ETTGGGTBBT
T ss_pred --------------ccchHHHHHHHHHHcCCCccEE-EeChhccCCC
Confidence 1122678999999999999977 9999999965
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=6.8e-44 Score=393.30 Aligned_cols=316 Identities=19% Similarity=0.256 Sum_probs=220.2
Q ss_pred CCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 228 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 228 ~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
.|.|++++ ++||||++||||+|||+|++++. ++|||++.|||.++ ++|||.+|||+||++||++||+||+|+|+||
T Consensus 40 gg~~~~i~-~kldyL~~LGvtaIWL~P~~~s~--s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 40 GGWYNFLM-GKVDDIAAAGITHVWLPPPSHSV--SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CcCHHHHH-HHHHHHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 37899999 89999999999999999999875 56999999999999 6999999999999999999999999999999
Q ss_pred cCCCcccccc---CCCC-C---CCCcccc----C------CCCCccc----CCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004765 307 ASNNVLDGLN---MFDG-T---DGHYFHS----G------SRGYHWM----WDSRLFNYGSWEVLRFLLSNARWWLEEYK 365 (732)
Q Consensus 307 ~s~~~~~~~~---~~dg-~---~~~yf~~----~------~~g~~~~----w~~~~ln~~~~ev~~~l~~~l~~Wl~e~g 365 (732)
++.++..... .|.+ . ...|+.. + ..+.... .+.++||+.||+|+++|++++++|++++|
T Consensus 117 ~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~G 196 (428)
T PLN00196 117 RTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIG 196 (428)
T ss_pred cccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCC
Confidence 9976632211 1222 1 1122210 0 0011111 13489999999999999999998888899
Q ss_pred CCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCC-----c-----
Q 004765 366 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT-----F----- 435 (732)
Q Consensus 366 vDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p~-----~----- 435 (732)
|||||+|+|++|.. .|++++ +++.+| .++|||.|.+... .
T Consensus 197 iDG~RlD~ak~~~~--------------------------~f~~~~---v~~~~p-~f~VGE~W~~~~~~~~~~~~~~~~ 246 (428)
T PLN00196 197 FDAWRLDFAKGYSA--------------------------EVAKVY---IDGTEP-SFAVAEIWTSMAYGGDGKPEYDQN 246 (428)
T ss_pred CCEEEeehhhhCCH--------------------------HHHHHH---HHccCC-cEEEEEEeccccccccCCccccch
Confidence 99999999998832 265554 555567 7899999975210 0
Q ss_pred -----eecccc--C-----CcccCcccchhhHHHHHHHHhcCCchhhhhhhhhhh--cccccccceeecccccccccccc
Q 004765 436 -----CIPVQD--G-----GVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTM--TNRRWLEKCVAYAESHDQALVGD 501 (732)
Q Consensus 436 -----~~~~~~--g-----g~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~esHD~~r~g~ 501 (732)
+..+.+ + .+.|||.+... .+ ..+.+ ..|...+..... .-..++.++|+|++|||+.|...
T Consensus 247 ~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~-~~---~~~~~--~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~ 320 (428)
T PLN00196 247 AHRQELVNWVDRVGGAASPATVFDFTTKGI-LN---VAVEG--ELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQH 320 (428)
T ss_pred hhHHHHHHHHHhcCCccCcceeecccchHH-HH---HHhcC--CchhhhhhcccCcchhhcChhhceeeccCCCCccccc
Confidence 001111 1 12467765431 11 12221 233321111000 02456778999999999998632
Q ss_pred cchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCC
Q 004765 502 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 581 (732)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn 581 (732)
- + + ......++|.+++||+||+||| |||+=
T Consensus 321 ~----~--~------------------~~~~~~~lAyA~iLT~pG~P~I-yYg~~------------------------- 350 (428)
T PLN00196 321 M----W--P------------------FPSDKVMQGYAYILTHPGNPCI-FYDHF------------------------- 350 (428)
T ss_pred c----C--C------------------CccchHHHHHHHHHcCCCcceE-eeCCC-------------------------
Confidence 1 0 0 0022458899999999999999 99941
Q ss_pred CCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEe-CcEEEEEEcC
Q 004765 582 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER-GNLVFVFNFH 653 (732)
Q Consensus 582 ~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R-~~llvv~Nf~ 653 (732)
++| .+.+++++|+++||++++++.|...+... ++.+++++| +.++|.+|..
T Consensus 351 ----------~~~---------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a--~~d~yv~~~~~~~~~~i~~~ 402 (428)
T PLN00196 351 ----------FDW---------GLKEEIAALVSIRNRNGITPTSELRIMEA--DADLYLAEIDGKVIVKIGSR 402 (428)
T ss_pred ----------cCc---------cHHHHHHHHHHHHHhCCCcCCccEEEEEe--cCCEEEEEECCEEEEEECCC
Confidence 222 24458999999999999999886555443 345999999 6789999865
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.5e-41 Score=370.34 Aligned_cols=315 Identities=16% Similarity=0.241 Sum_probs=218.7
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 309 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~ 309 (732)
-|++|+ ++||||++||||+|||+|++++. ++|||++.|||.++|+|||.+||++||++||++||+||+|+|+||++.
T Consensus 27 ~w~~i~-~kl~~l~~lG~t~iwl~P~~~~~--~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLE-GKVPDLAKSGFTSAWLPPPSQSL--APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEeCCCCcCC--CCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 578998 89999999999999999999875 459999999999999999999999999999999999999999999964
Q ss_pred Cccc---cccCCCCCCCCcccc------CCCCCccc----CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccc
Q 004765 310 NVLD---GLNMFDGTDGHYFHS------GSRGYHWM----WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 376 (732)
Q Consensus 310 ~~~~---~~~~~dg~~~~yf~~------~~~g~~~~----w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~ 376 (732)
.... ....|+|....|... ...+.... .+.++||++||+||++|++++++|++++||||||+|+|++
T Consensus 104 ~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 104 TTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 3211 122344432111110 00111111 1348999999999999999998777779999999999998
Q ss_pred ccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCC----C------------ceeccc
Q 004765 377 MMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMP----T------------FCIPVQ 440 (732)
Q Consensus 377 m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~~p----~------------~~~~~~ 440 (732)
|. ..|++++.+.+ +| .+++||.|.+.. . .+..+.
T Consensus 184 ~~--------------------------~~f~~~~~~~~---~p-~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~ 233 (401)
T PLN02361 184 YS--------------------------AKFVKEYIEAA---KP-LFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWI 233 (401)
T ss_pred CC--------------------------HHHHHHHHHhh---CC-eEEEEEEecCCCcCCcccccchhhhhHHHHHHHHH
Confidence 83 33888887654 35 889999997632 1 011111
Q ss_pred c--CC--cccCcccchhhHHHHHHHHhcCCchhhhhhhhhh--hcccccccceeecccccccccccccchhhhcCChhHH
Q 004765 441 D--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHT--MTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 514 (732)
Q Consensus 441 ~--gg--~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~ 514 (732)
. ++ ..|||++...+.+.+ .+ +.|.+.+.... ..-..+++++|+|++|||+.|...- |..
T Consensus 234 ~~~~~~~~~fDF~l~~~l~~a~----~~--~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~----~~~----- 298 (401)
T PLN02361 234 DGTGGLSAAFDFTTKGILQEAV----KG--QWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAH----WPF----- 298 (401)
T ss_pred HhcCCcceeecHHHHHHHHHHH----hh--hHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhc----cCC-----
Confidence 1 21 358888776665443 11 12333222110 0124567889999999999875221 111
Q ss_pred HhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCcccCcccCC
Q 004765 515 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 594 (732)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w 594 (732)
.....++|.+++||+||+||| |||+=+ +|
T Consensus 299 ---------------~~~~~~~AyA~iLT~pG~P~V-yyg~~~-----------------------------------~~ 327 (401)
T PLN02361 299 ---------------PSDHIMEGYAYILTHPGIPTV-FYDHFY-----------------------------------DW 327 (401)
T ss_pred ---------------chHHHHHHHHHHHCCCCcCeE-eecccc-----------------------------------CC
Confidence 123567789999999999999 998611 11
Q ss_pred CCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEeCcEEEEEE
Q 004765 595 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFN 651 (732)
Q Consensus 595 ~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R~~llvv~N 651 (732)
. ..+.+++++|++|||++++++.+...+... +++..+|-..+.++|=++
T Consensus 328 ~-------~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a-~~~~y~a~i~~~~~~k~g 376 (401)
T PLN02361 328 G-------GSIHDQIVKLIDIRKRQDIHSRSSIRILEA-QSNLYSAIIDEKLCMKIG 376 (401)
T ss_pred C-------hHHHHHHHHHHHHHHhCCCCCCCcEEEEEe-cCCeEEEEECCeEEEEec
Confidence 1 257889999999999999999886555432 334344555566555543
No 30
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=1.4e-40 Score=366.24 Aligned_cols=374 Identities=13% Similarity=0.099 Sum_probs=247.7
Q ss_pred CCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 225 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 225 ~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
.+++|++++++ ++ ||++ ||++|||||+|+++ +.+||+|+||++|+|+|||.+||++|+++ |+||+|+|+
T Consensus 13 g~glgdl~g~l-~~--yL~~-~v~~i~LlPffps~--sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~ 81 (470)
T TIGR03852 13 GKNLKELNKVL-EN--YFKD-AVGGVHLLPFFPST--GDRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMI 81 (470)
T ss_pred CCChhhHHHHH-HH--HHHH-hCCEEEECCCCcCC--CCCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhcc
Confidence 35789999998 45 9999 89999999999887 47999999999999999999999999997 899999999
Q ss_pred cccCCCccccccCCCC-CC---CCccccC--------C-----------C------------C-CcccC-----CCCCCC
Q 004765 305 SHASNNVLDGLNMFDG-TD---GHYFHSG--------S-----------R------------G-YHWMW-----DSRLFN 343 (732)
Q Consensus 305 nH~s~~~~~~~~~~dg-~~---~~yf~~~--------~-----------~------------g-~~~~w-----~~~~ln 343 (732)
||+|..|+|+.....+ .. ..||... + + + ..+.| +.++||
T Consensus 82 NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN 161 (470)
T TIGR03852 82 NHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLD 161 (470)
T ss_pred cccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccC
Confidence 9999999766543221 11 1234300 0 0 0 01122 247899
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcc-c-ChhHHHHHHHHHHhhhccCCC
Q 004765 344 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA-T-DVDAVVYLMLVNDMIHGLYPE 421 (732)
Q Consensus 344 ~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~-~-~~~~~~~l~~~~~~v~~~~p~ 421 (732)
|.||+|+++|.+++++|++ .||||||+|||.++.+.. |. .+ . ..+.+++|+++++.+ ..|+
T Consensus 162 ~~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~-Gt-------------~c~~l~pet~~~l~~~r~~~--~~~~ 224 (470)
T TIGR03852 162 VTSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKL-GT-------------NDFFVEPEIWELLDEVRDIL--APTG 224 (470)
T ss_pred CCCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccC-CC-------------CcccCChhHHHHHHHHHHHh--ccCC
Confidence 9999999999999999997 899999999999997652 11 11 1 257889999999988 4579
Q ss_pred EEEEEecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhcCCchhhhhhhhhhhcccccccceeecccccccccccc
Q 004765 422 AVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGD 501 (732)
Q Consensus 422 ~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~ 501 (732)
+++|+|.+........--.++.+.|+|.+...+...+...-......|.+. .+..+++|+.|||...+.+
T Consensus 225 ~~ll~E~~~~~~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~----------~p~~~~nfL~sHDgigl~~ 294 (470)
T TIGR03852 225 AEILPEIHEHYTIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRK----------SPMKQFTTLDTHDGIGVVD 294 (470)
T ss_pred CEEEeHhhhhcccccccccceeEEccCccchhhHHHhhccCHHHHHHHHHh----------CcccceEEeecCCCCCCcc
Confidence 999999975433221101234567888876554322211100111223221 1223469999999865411
Q ss_pred cchhhhcCChh----HHHhhh--------------c-C-------CCCCccchhHHHHHHHHHHHHHhcCCccccccccc
Q 004765 502 KTIAFWLMDKD----MYDFMA--------------L-D-------RPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGN 555 (732)
Q Consensus 502 ~~~~~~~~~~~----~~~~~~--------------~-~-------~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~ 555 (732)
-. -+++.+ +...|. . . +..-+.+.+..++..+|++++|++||+|.| |||.
T Consensus 295 ~~---glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i-Yy~~ 370 (470)
T TIGR03852 295 VK---DLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV-YYVG 370 (470)
T ss_pred cc---ccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE-Eech
Confidence 00 011211 112221 0 0 000112223346778899999999999988 9999
Q ss_pred cccCCCCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCC-CcEEEecccC
Q 004765 556 EFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS-EHQYVSRKDE 634 (732)
Q Consensus 556 E~G~~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~-g~~~i~~~~~ 634 (732)
|+|+.+..+-+. .++..+.-+|..++.........+.+..-...||++|+++|++.- |.+.+ ...
T Consensus 371 llg~~nD~~~~~------------rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~--~~~ 436 (470)
T TIGR03852 371 LLAGKNDIELLE------------ETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDI--ETP 436 (470)
T ss_pred hhcCCchHHHHH------------hcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEe--cCC
Confidence 999976433221 233455566766666553322223344444559999999999864 54444 345
Q ss_pred CCcEEEEEe------CcEEEEEEcCC
Q 004765 635 GDRVIVFER------GNLVFVFNFHW 654 (732)
Q Consensus 635 ~~~vlaf~R------~~llvv~Nf~~ 654 (732)
++.|++|.| +.+++++|++.
T Consensus 437 ~~~~~~~~r~~~~~~~~~~~~~n~~~ 462 (470)
T TIGR03852 437 SENQIEIVRTNKDGGNKAILTANLKT 462 (470)
T ss_pred CCcEEEEEEEcCCCCceEEEEEecCC
Confidence 677999999 35899999994
No 31
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=3.2e-38 Score=349.66 Aligned_cols=468 Identities=11% Similarity=0.082 Sum_probs=297.6
Q ss_pred CCceEEEEecCCCCCCCCCCcHHhHHH-hhccccccCCccEEEECCcccC---------CCCCCCCCccccccCCCCCCC
Q 004765 210 KSLRIYEAHVGMSSTEPIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEH---------SYYASFGYHVTNFFAPSSRCG 279 (732)
Q Consensus 210 ~~~~IYE~hv~~~~~~~~~g~~~~~~~-~~L~ylk~LGv~~I~L~Pi~e~---------~~~~~~GY~~~~~~a~d~~~G 279 (732)
...+=+.+++.+....++..-+..+.+ ...+||++|||++|||+|++++ |. ...||+++| |.|+|+||
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~-~D~gyDi~d-~~Idp~~G 127 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPS-IDGNFDRIS-FDIDPLLG 127 (688)
T ss_pred hcCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCC-CCCCCCccc-CccCcccC
Confidence 456777888888765544333444443 5779999999999999999999 64 347999999 59999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCCccccc-cCC-CCCCCCcc-------------------------------
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMF-DGTDGHYF------------------------------- 326 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~-~~~-dg~~~~yf------------------------------- 326 (732)
|.+||++||++||++||+||+|+|+||||+.|+ +. ... ++..+.||
T Consensus 128 T~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~ 206 (688)
T TIGR02455 128 SEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCD 206 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHH
Confidence 999999999999999999999999999999984 32 111 12222233
Q ss_pred ------------------ccCCCCCcccCC----------------------CCCCCCCCHH--HHHHHH-HHHHHHHHH
Q 004765 327 ------------------HSGSRGYHWMWD----------------------SRLFNYGSWE--VLRFLL-SNARWWLEE 363 (732)
Q Consensus 327 ------------------~~~~~g~~~~w~----------------------~~~ln~~~~e--v~~~l~-~~l~~Wl~e 363 (732)
..+.....|.|+ .++|||.||. |++.|+ +++++|++
T Consensus 207 ~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~- 285 (688)
T TIGR02455 207 ELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC- 285 (688)
T ss_pred HHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-
Confidence 112222356665 2789999999 999999 89999999
Q ss_pred cCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhh--ccCCCEEEEEecCCCCCCceecccc
Q 004765 364 YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIH--GLYPEAVSIGEDVSGMPTFCIPVQD 441 (732)
Q Consensus 364 ~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~--~~~p~~~~iaE~~~~~p~~~~~~~~ 441 (732)
.|+||||+|++..|....... +....+...+++.+|+.|. ..+|+.++++|..- +|...+.+..
T Consensus 286 lG~~GfRLDAvpfLg~e~~~~-------------~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl-~~~d~~~~~g 351 (688)
T TIGR02455 286 LGARGLRLDANGFLGVERRAE-------------GTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNL-TIDDIAAMSH 351 (688)
T ss_pred hccccceeccccceeeecCCC-------------CCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccC-CHHHHHHHhC
Confidence 899999999999885431110 0011345678999999998 78999999999975 5555555555
Q ss_pred CCcccCcccchhhHHHHHHHHhcCCchhhhhhhhhhhcccc-cccceeeccccccccccccc----------------ch
Q 004765 442 GGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRR-WLEKCVAYAESHDQALVGDK----------------TI 504 (732)
Q Consensus 442 gg~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~esHD~~r~g~~----------------~~ 504 (732)
+ +.|..+++..+-.+...|...+..-...-+..++. .. -..+.+.++.|||+..+.-- ++
T Consensus 352 ~--~~dl~~dF~t~p~~~~AL~tgda~pLr~~L~~~~~-~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~ 428 (688)
T TIGR02455 352 G--GADLSYDFITRPAYHHALLTGDTEFLRLMLKEMHA-FGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTL 428 (688)
T ss_pred C--CcceeecccccHHHHHHHHcCCHHHHHHHHHhhhc-CCCCchhhhhhccCccccchhhhhhcccccccccccccccC
Confidence 4 33433333333333333333332222111211111 11 23345789999998543200 00
Q ss_pred h----hhcCChhHHHhhhcCC---------------------------CCCccchhHHHHHHHHHHHHHh----cCCccc
Q 004765 505 A----FWLMDKDMYDFMALDR---------------------------PSTPRIDRGIALHKMIRLVTMG----LGGEAY 549 (732)
Q Consensus 505 ~----~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~kla~~l~~t----~pG~p~ 549 (732)
. .--+-..||..++.+. ...+..++..+..+++.+++++ +||+|+
T Consensus 429 ~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~ 508 (688)
T TIGR02455 429 PGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFA 508 (688)
T ss_pred CccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceE
Confidence 0 0011234454444432 1345566677788999999999 999998
Q ss_pred ccccc--------------ccccCCCCCCCCCCC--CCC--CCCc----ccCCCCCCCcccCcccCCCCccccccHHHHH
Q 004765 550 LNFMG--------------NEFGHPEWIDFPRGD--QRL--PNGQ----FVPGNNFSYDKCRRRFDLGDADYLRYRGMQE 607 (732)
Q Consensus 550 l~y~G--------------~E~G~~~~~d~p~~d--~~~--~~~~----~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~ 607 (732)
| ||| +|+|+.+..-.++.- ... |... -.|. .+..+.=...+.....++++
T Consensus 509 L-~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~-------~~~~Ygnv~~Ql~dp~S~l~ 580 (688)
T TIGR02455 509 L-SGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPK-------ARALYGSLAEQLDEPDSFAC 580 (688)
T ss_pred e-ecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCC-------CcCCCCCHHHHhhCCccHHH
Confidence 8 999 999995322222210 000 0000 0011 11111111123345579999
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEe------CcEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCC
Q 004765 608 FDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPL 681 (732)
Q Consensus 608 f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R------~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~ 681 (732)
..++|++.|+++++...+...+ ....+..|+|+.| +.+|+|.||+.......+.++.-.+|...++++....
T Consensus 581 ~l~~il~vR~~~~i~~~~~~~~-~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~- 658 (688)
T TIGR02455 581 KLKKILAVRQAYDIAASKQILI-PDVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVE- 658 (688)
T ss_pred HHHHHHHHHHhCCcccCceeee-cCCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCcc-
Confidence 9999999999999988884333 3345677999998 2499999999533323333332234556666543211
Q ss_pred CCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEEecCC
Q 004765 682 FGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADEE 726 (732)
Q Consensus 682 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~~~~~ 726 (732)
+ . ....+++.|+|+|+...+|..+...
T Consensus 659 -~---~--------------~~~~~~~~i~L~~y~~~wl~~~~~~ 685 (688)
T TIGR02455 659 -G---D--------------LTDDCELMINLDPYEALALRIVNAA 685 (688)
T ss_pred -C---C--------------cCCCceeEEEecCcceEEEEecccc
Confidence 0 0 0123458999999999999876544
No 32
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=1.9e-39 Score=359.27 Aligned_cols=375 Identities=14% Similarity=0.136 Sum_probs=247.1
Q ss_pred CcHHhHHHhhcc-ccccCCccEEEECCccc-CCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 229 NTYANFRDDVLP-RIKRLGYNAVQIMAVQE-HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 229 g~~~~~~~~~L~-ylk~LGv~~I~L~Pi~e-~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
|+++|++ ++|| ||++| |++|||||+++ +|. ..+||+|+||++|+|+|||++||++|++ ||+||+|+|+||
T Consensus 17 GdL~gl~-~kLd~yL~~l-v~~vhllPff~psp~-sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~NH 88 (495)
T PRK13840 17 GGLKSLT-ALLDGRLDGL-FGGVHILPFFYPIDG-ADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVNH 88 (495)
T ss_pred CCHhHHH-HHHHHHHHHH-hCeEEECCCccCCCC-CCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCCc
Confidence 8999999 8999 59999 99999999995 444 5689999999999999999999999995 999999999999
Q ss_pred cCCCccccccCC-CCCCC---CccccCC-------------------CCC------------cccCC-----CCCCCCCC
Q 004765 307 ASNNVLDGLNMF-DGTDG---HYFHSGS-------------------RGY------------HWMWD-----SRLFNYGS 346 (732)
Q Consensus 307 ~s~~~~~~~~~~-dg~~~---~yf~~~~-------------------~g~------------~~~w~-----~~~ln~~~ 346 (732)
+|..|+|+.... .|..+ .||.... .+. .+.|. .++||+.|
T Consensus 89 tS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~N 168 (495)
T PRK13840 89 MSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHS 168 (495)
T ss_pred CCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCC
Confidence 999997654321 11111 1222100 010 11232 38899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 004765 347 WEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 426 (732)
Q Consensus 347 ~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~ia 426 (732)
|+|+++|++++++|++ .||||||+||+.++.+.. |. . + ...++.++||+++++.++.. +..+|+
T Consensus 169 P~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~-gt-------~---c--~~~pe~~~~l~~lr~~~~~~--~~~ll~ 232 (495)
T PRK13840 169 AAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKA-GT-------S---C--FMIPETFEFIDRLAKEARAR--GMEVLV 232 (495)
T ss_pred HHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCC-CC-------C---c--CCChHHHHHHHHHHHHhhhc--CCEEEE
Confidence 9999999999999998 899999999999887651 11 0 0 01256789999999999876 567899
Q ss_pred ecCCCCCCceeccccCCcccCcccchhhHHHHHHHHhcCCchhhhhhhhhhhcccccccceeeccccccccccccc----
Q 004765 427 EDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDK---- 502 (732)
Q Consensus 427 E~~~~~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~---- 502 (732)
|.++.............+.|||.+.. .++..|...+....... +.. .+.++++|+.|||...+-+-
T Consensus 233 Ei~~y~~~~~~~~~e~~~vYnF~Lp~----ll~~aL~~~~~~~L~~~----l~~--~p~~~~n~L~~HDgIgl~d~~~~~ 302 (495)
T PRK13840 233 EIHSYYKTQIEIAKKVDRVYDFALPP----LILHTLFTGDVEALAHW----LEI--RPRNAVTVLDTHDGIGIIDVGADD 302 (495)
T ss_pred eCccccCccccccccccEEecchhhH----HHHHHHHhCCchHHHHH----HHh--CCCccEEeeecCCCCCcccccccc
Confidence 98764322111111233445555443 33444443332111111 111 14566899999999766111
Q ss_pred chhhhcCChhHHH----hh---hcC--------CCCC--c---------cchhHHHHHHHHHHHHHhcCCcccccccccc
Q 004765 503 TIAFWLMDKDMYD----FM---ALD--------RPST--P---------RIDRGIALHKMIRLVTMGLGGEAYLNFMGNE 556 (732)
Q Consensus 503 ~~~~~~~~~~~~~----~~---~~~--------~~~~--~---------~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E 556 (732)
.-..-+++.+... .+ ++. ..+. + .+.+.-++..++++++|++||+|-| |||+|
T Consensus 303 ~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~i-Y~~~l 381 (495)
T PRK13840 303 RGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQV-YYVGL 381 (495)
T ss_pred cccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCccee-eechh
Confidence 0000112221111 11 110 0000 0 0011124577889999999999876 99999
Q ss_pred ccCCCCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCC
Q 004765 557 FGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGD 636 (732)
Q Consensus 557 ~G~~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~ 636 (732)
+|..+-.+. ....+.+++.+|..++|...+..-.+.+++-.++|+++|+++|++.+.+... . .++
T Consensus 382 l~~~ND~~~------------~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~~~~~~~-~--~~~ 446 (495)
T PRK13840 382 LAGPNDMEL------------LARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFDGAFSYA-A--DGD 446 (495)
T ss_pred hccCccHHH------------HHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEEe-c--CCC
Confidence 999752211 1135668889999999997665455679999999999999999997665432 2 234
Q ss_pred cEEEEEe----CcEEEEEEcC
Q 004765 637 RVIVFER----GNLVFVFNFH 653 (732)
Q Consensus 637 ~vlaf~R----~~llvv~Nf~ 653 (732)
..++..| ......+||.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 447 TSLTLSWTAGDSSASLTLDFA 467 (495)
T ss_pred CeEEEEEecCCceEEEEEEcc
Confidence 4555555 2466677777
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-39 Score=368.42 Aligned_cols=399 Identities=22% Similarity=0.287 Sum_probs=249.9
Q ss_pred ceEEEEecCCCCCC--------CCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHH
Q 004765 212 LRIYEAHVGMSSTE--------PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 283 (732)
Q Consensus 212 ~~IYE~hv~~~~~~--------~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d 283 (732)
.+||++.+++|... .+.||++|++ ++||||++|||++|||+||++++ ..++||+++||+.++|.|||++|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s~-~~~~gY~~~Dy~~id~~~Gt~~d 78 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFESP-QADHGYDVSDYTKVDPHFGTEED 78 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCCC-ccCCCccccchhhcCcccCCHHH
Confidence 47999999999654 3469999999 89999999999999999999987 46799999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecccccCCCccccccCC-CCCC---CCccc---------------cCCCCCcccC-------
Q 004765 284 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTD---GHYFH---------------SGSRGYHWMW------- 337 (732)
Q Consensus 284 ~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~-dg~~---~~yf~---------------~~~~g~~~~w------- 337 (732)
|++||++||++||+||||+|+||+|..+.+..... .+.. ..||. ....+..|.+
T Consensus 79 ~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (505)
T COG0366 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceE
Confidence 99999999999999999999999999985443221 1110 02222 1111222221
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccCh-hHHHHHHH
Q 004765 338 ------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLML 410 (732)
Q Consensus 338 ------~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~-~~~~~l~~ 410 (732)
..++||+.|++|++.++++++||++ +||||||+|++++|.... +.+ .. .....+. ...++++.
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~-~~~-----~~---~~~~~~~~~~~~~~~~ 228 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDF-GLP-----PS---EENLTFLEEIHEYLRE 228 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcccc-CCC-----Cc---ccccccHHHHHHHHHH
Confidence 1257999999999999999999999 999999999999986431 100 00 0000111 12244444
Q ss_pred HHHhhhccCCCEEEEEecCCCCCCceeccccCC------cccCcccchhhHH-----HHHHHHhcCCchhhhhhhhhhhc
Q 004765 411 VNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGG------VGFDYRLQMAIAD-----KWIELLKKRDEDWKMGAIVHTMT 479 (732)
Q Consensus 411 ~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gg------~gfd~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~ 479 (732)
.+..+..........++........+... ... ..|++... .... .....++.....|... ...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 302 (505)
T COG0366 229 ENPDVLIYGEAITDVGEAPGAVKEDFADN-TSFTNPELSMLFDFSHV-GLDFEALAPLDAEELKEILADWPLA----VNL 302 (505)
T ss_pred HHHHHHhcCcceeeeeccccccchhhhhc-cchhhhhHhhccccccc-cccccccCcccHHHHHHHHHHHHhh----hcc
Confidence 44444433234444444443332222221 100 11221110 0000 0000000000001000 000
Q ss_pred ccccccceeecccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccC
Q 004765 480 NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 559 (732)
Q Consensus 480 ~~~~~~~~v~~~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~ 559 (732)
+..|. ..|..|||+.|+-+... .+. ....+..+++.+++++++|+|+| |||+|+|+
T Consensus 303 ~~~~~---~~~~~~hD~~r~~~~~~--------------~~~------~~~~~~~~~~~~~~~~~~g~p~i-y~G~e~g~ 358 (505)
T COG0366 303 NDGWN---NLFLSNHDQPRLLSRFG--------------DDV------GGRDASAKLLAALLFLLPGTPFI-YYGDELGL 358 (505)
T ss_pred ccCch---hhhhhhcCccceeeecc--------------CCc------cchHHHHHHHHHHHHhCCCCcEE-ecccccCC
Confidence 11222 23789999998754320 000 01235677888899999999998 99999999
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCcccCcccCCC---------------------------Ccc--ccccHHHHHHHH
Q 004765 560 PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLG---------------------------DAD--YLRYRGMQEFDR 610 (732)
Q Consensus 560 ~~~~d~p~~d~~~~~~~~~~gn~~s~~~~r~~~~w~---------------------------~~~--~~~~~~l~~f~r 610 (732)
....+.+........ .......+++.||.+|.|. ... .....+++.+++
T Consensus 359 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~ 436 (505)
T COG0366 359 TNFKDPPIKYYDDVE--LDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYR 436 (505)
T ss_pred CCCCCcchhhhchhh--hhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHH
Confidence 764433211000000 1123445667788888887 111 111458999999
Q ss_pred HHHHHHHHh-CCCCCCcEEEecccCCCcEEEEEeC----cEEEEEEcCC
Q 004765 611 AMQHLEEKY-GFMTSEHQYVSRKDEGDRVIVFERG----NLVFVFNFHW 654 (732)
Q Consensus 611 ~L~~LR~~~-~~l~~g~~~i~~~~~~~~vlaf~R~----~llvv~Nf~~ 654 (732)
+|+++|+.+ ..+..|...+........+++|.|. .++|++|++.
T Consensus 437 ~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 485 (505)
T COG0366 437 RLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSE 485 (505)
T ss_pred HHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCC
Confidence 999999988 5666675555555566679999993 3899999994
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=5.9e-37 Score=349.97 Aligned_cols=327 Identities=19% Similarity=0.267 Sum_probs=216.2
Q ss_pred CceEEEEecCCCC-CCCCCCc-HHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHH
Q 004765 211 SLRIYEAHVGMSS-TEPIINT-YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLI 288 (732)
Q Consensus 211 ~~~IYE~hv~~~~-~~~~~g~-~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV 288 (732)
....||+.+..|- ...+-|. |++|+ ++||||++||||+|||+|++++. .++||++.|||.++++|||.+||++||
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~-ekldyL~~LG~taIWLpP~~~s~--s~~GY~p~D~y~lds~yGT~~ELk~LI 574 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRWYMELG-EKAAELSSLGFTVVWLPPPTESV--SPEGYMPKDLYNLNSRYGTIDELKDLV 574 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCchHHHHH-HHHHHHHHhCCCEEEeCCCCCCC--CCCCcCcccccccCcCcCCHHHHHHHH
Confidence 3456777776663 1122233 68998 89999999999999999999876 569999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecccccCCCccc--c-ccCCCCCC----------CCccccCCCCCccc----CCCCCCCCCCHHHHH
Q 004765 289 DKAHELGLLVLMDIVHSHASNNVLD--G-LNMFDGTD----------GHYFHSGSRGYHWM----WDSRLFNYGSWEVLR 351 (732)
Q Consensus 289 ~~aH~~GI~VilDvV~nH~s~~~~~--~-~~~~dg~~----------~~yf~~~~~g~~~~----w~~~~ln~~~~ev~~ 351 (732)
++||++||+||+|+|+||++..+.. + .+.|.+.. ...|. .++..+. ...++||+.||+||+
T Consensus 575 ~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~--GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 575 KSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQ--GRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred HHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccC--CcCCcCcccccCcCCcCCCCCHHHHH
Confidence 9999999999999999999864311 1 11222210 00111 0111111 134899999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCC
Q 004765 352 FLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSG 431 (732)
Q Consensus 352 ~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~~ 431 (732)
.|.+++++|++++||||||||+|+++.. .|++++ +++.+| .++|||.|++
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~--------------------------~Fvkey---v~a~kp-~F~VGEyWd~ 702 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWG--------------------------GYVKDY---MEASEP-YFAVGEYWDS 702 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCH--------------------------HHHHHH---HhccCC-cEEEEEeccc
Confidence 9999999999899999999999986521 144444 333445 7999999987
Q ss_pred CCC--------------ceecccc--CC--cccCcccchhhHHHHHHHHhcCCchhhhhhhhh---hhcccccccceeec
Q 004765 432 MPT--------------FCIPVQD--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVH---TMTNRRWLEKCVAY 490 (732)
Q Consensus 432 ~p~--------------~~~~~~~--gg--~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~v~~ 490 (732)
... .+..+.. ++ ..|||.+...+.+.+ + ..+.|.+.+... .+. ..|++++|+|
T Consensus 703 ~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~----~-~~e~wrL~d~~g~~~glv-~~~P~~AVTF 776 (894)
T PLN02784 703 LSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSAL----E-RCEYWRLSDQKGKPPGVV-GWWPSRAVTF 776 (894)
T ss_pred cccccCccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHH----h-ccchhhhhhccCCCCCee-ccccCceEEE
Confidence 321 0111211 11 347777665543222 1 223455443321 122 4678899999
Q ss_pred ccccccccccccchhhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCC
Q 004765 491 AESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQ 570 (732)
Q Consensus 491 ~esHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~ 570 (732)
++|||+.+... .|..+ .....++++++||+||+||| |||+=+|.
T Consensus 777 VDNHDTg~~Q~----~w~~p--------------------~~k~~~AYAyILthpG~PcV-Fy~h~y~~----------- 820 (894)
T PLN02784 777 IENHDTGSTQG----HWRFP--------------------EGKEMQGYAYILTHPGTPAV-FYDHIFSH----------- 820 (894)
T ss_pred ecCCCCCCCcc----cCCCC--------------------ccchhhHHHHHHcCCCcceE-Eehhhhhh-----------
Confidence 99999975311 11111 11234588999999999999 98875431
Q ss_pred CCCCCcccCCCCCCCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEE-EEeCcEEEE
Q 004765 571 RLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIV-FERGNLVFV 649 (732)
Q Consensus 571 ~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vla-f~R~~llvv 649 (732)
+..-+++|+.+|+...+-......+.. .+..+++ -..+.++|-
T Consensus 821 ----------------------------------~~~~I~~Li~iRk~~gI~~~S~v~i~~--a~~~~Y~a~i~~k~~~k 864 (894)
T PLN02784 821 ----------------------------------YHPEIASLISLRNRQKIHCRSEVKITK--AERDVYAAIIDEKVAMK 864 (894)
T ss_pred ----------------------------------hHHHHHHHHHHHHHcCCCCCCceeEEE--ecCCcEEEEeCCeeEEE
Confidence 112379999999999876655433332 2233443 333566555
Q ss_pred E
Q 004765 650 F 650 (732)
Q Consensus 650 ~ 650 (732)
+
T Consensus 865 i 865 (894)
T PLN02784 865 I 865 (894)
T ss_pred E
Confidence 5
No 35
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=336.82 Aligned_cols=171 Identities=27% Similarity=0.367 Sum_probs=139.6
Q ss_pred CCCCCCceEEEEecCCCCC--CCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHH
Q 004765 206 PKKPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 283 (732)
Q Consensus 206 ~~~~~~~~IYE~hv~~~~~--~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d 283 (732)
+.+++..+|||+.+++|.. ..+.|+++|++ ++|+|||+||+|+|||+||++++. +.+||+++||+.++|+|||.+|
T Consensus 12 ~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~-~kldyi~~lG~taiWisP~~~s~~-~~~GY~~~d~~~l~p~fGt~ed 89 (545)
T KOG0471|consen 12 PDWWKTESIYQIYPDSFADSDGDGVGDLKGIT-SKLDYIKELGFTAIWLSPFTKSSK-PDFGYDASDLEQLRPRFGTEED 89 (545)
T ss_pred chhhhcCceeEEeccccccccCCCccccccch-hhhhHHHhcCCceEEeCCCcCCCH-HHhccCccchhhhcccccHHHH
Confidence 3456788999999999965 45679999999 899999999999999999999986 4799999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCC---------------------CccccCCCCCcccC-----
Q 004765 284 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG---------------------HYFHSGSRGYHWMW----- 337 (732)
Q Consensus 284 ~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~---------------------~yf~~~~~g~~~~w----- 337 (732)
|++||+++|++||++|+|+|+||++..++|+......... ..+.....+..|.|
T Consensus 90 f~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~ 169 (545)
T KOG0471|consen 90 FKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQ 169 (545)
T ss_pred HHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCccccccc
Confidence 9999999999999999999999999877655433211111 11111112222222
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHH-HHHHHcCCCeEEEcccccccc
Q 004765 338 ---------DSRLFNYGSWEVLRFLLSNAR-WWLEEYKFDGFRFDGVTSMMY 379 (732)
Q Consensus 338 ---------~~~~ln~~~~ev~~~l~~~l~-~Wl~e~gvDGfR~D~~~~m~~ 379 (732)
..+++|++||+|++.|.++++ +|++ +||||||+|+++++..
T Consensus 170 ~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~~ 220 (545)
T KOG0471|consen 170 KYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYAG 220 (545)
T ss_pred ceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccccc
Confidence 137899999999999999999 8888 9999999999998743
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=1.1e-31 Score=310.23 Aligned_cols=171 Identities=22% Similarity=0.306 Sum_probs=132.1
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
+||.+++ ++||||++||||+|||+||+++...++|||+++||++|+|+|||.++|++||++||++||+||||+|+||++
T Consensus 13 ~tf~~~~-~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 13 FTFDDAA-ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCHHHHH-HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7999999 899999999999999999999866678999999999999999999999999999999999999999999999
Q ss_pred CC---cccccc------------CC----C-------------CCC-----------------C----CccccCC----C
Q 004765 309 NN---VLDGLN------------MF----D-------------GTD-----------------G----HYFHSGS----R 331 (732)
Q Consensus 309 ~~---~~~~~~------------~~----d-------------g~~-----------------~----~yf~~~~----~ 331 (732)
.+ ++++.. .| + |.. . .||+... .
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 76 222110 01 0 000 0 0222110 0
Q ss_pred C------------C-----------c---ccC----------------CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeE
Q 004765 332 G------------Y-----------H---WMW----------------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 369 (732)
Q Consensus 332 g------------~-----------~---~~w----------------~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGf 369 (732)
. . + ..| +.+.++.++|+|.+...+.+..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 0 0 0 012 12557778999999999999999998779999
Q ss_pred EEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEe
Q 004765 370 RFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE 427 (732)
Q Consensus 370 R~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE 427 (732)
|+|.+..+. ++..||+.+++.+ .|+++++.|
T Consensus 252 RIDh~dGL~------------------------dP~~Yl~rLr~~~---~~~~yivvE 282 (825)
T TIGR02401 252 RIDHIDGLA------------------------DPEGYLRRLRELV---GPARYLVVE 282 (825)
T ss_pred EeccccccC------------------------ChHHHHHHHHHhc---CCCceEEEE
Confidence 999997662 2445999998764 345778888
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.95 E-value=5.6e-26 Score=264.07 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=78.3
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
++|.+++ ++||||++||||+|||+||+++...++|||+++||+.|+|+|||.++|++||++||++||+||||+|+||++
T Consensus 17 ~tf~~~~-~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 17 FTFDDAA-ELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCHHHHH-HHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7999999 899999999999999999999866678999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 004765 309 NNV 311 (732)
Q Consensus 309 ~~~ 311 (732)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 764
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.1e-21 Score=199.90 Aligned_cols=381 Identities=17% Similarity=0.216 Sum_probs=221.9
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCC-----CCC-CCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY-----ASF-GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 303 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~-----~~~-GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV 303 (732)
.+..++.|.-..|.--|+-+||+.|++|+... .-| .|+|.+ |.++.|-|..+||+.||..|.+-|+|+++|+|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHHHHHHhhccceEEEehhh
Confidence 45677777888999999999999999997422 213 699999 68999999999999999999999999999999
Q ss_pred ccccCCCcccc-------------ccCCCCCCCC--ccccCC----CCCcccC------------CCCCCCCCCHHHHHH
Q 004765 304 HSHASNNVLDG-------------LNMFDGTDGH--YFHSGS----RGYHWMW------------DSRLFNYGSWEVLRF 352 (732)
Q Consensus 304 ~nH~s~~~~~~-------------~~~~dg~~~~--yf~~~~----~g~~~~w------------~~~~ln~~~~ev~~~ 352 (732)
+||++....+| ...|.|.+.. -|+... ......| +..+||.++.-||..
T Consensus 117 ~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 117 INHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSK 196 (504)
T ss_pred hhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHH
Confidence 99998532111 1223332211 122210 1111122 236799999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHH-HHHHHHHHhhhccCCCEEEEEecCC-
Q 004765 353 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDVS- 430 (732)
Q Consensus 353 l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~~v~~~~p~~~~iaE~~~- 430 (732)
|++.|.+.++ .||-|||+|+++||... |...+ .-|+.+|.-.-..+...+++-|...
T Consensus 197 ive~L~hLid-lGVAGFRvDAsKHMwp~--------------------Di~~I~~~l~nLnsD~f~s~srpfi~qEVID~ 255 (504)
T KOG2212|consen 197 IAEYLNHLID-IGVAGFRVDASKHMWPG--------------------DIKAILDKLHNLNSDWFPSGSKPFIYQEVIDL 255 (504)
T ss_pred HHHHHHHHHH-hccceeeechhhccChH--------------------HHHHHHHHHhhcccccccCCCCceehhhhhhc
Confidence 9999999999 99999999999999532 11111 1122222222222223455555543
Q ss_pred -CCCCceeccccCCcccCcccchhhHHH-----HHHHHhcCCchhhhhhhhhhhcccccccceeecccccccccccccch
Q 004765 431 -GMPTFCIPVQDGGVGFDYRLQMAIADK-----WIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 504 (732)
Q Consensus 431 -~~p~~~~~~~~gg~gfd~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~ 504 (732)
+.+--+..+..-|.--.|++...+... -+++|+.-...|. ....++.++|++|||+.|-....-
T Consensus 256 GgE~v~~~dY~g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wG----------f~~s~~~L~FvDNHDNQR~~gagg 325 (504)
T KOG2212|consen 256 GGEPIKSSDYFGNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWG----------FMPSDRALVFVDNHDNQRGHGAGG 325 (504)
T ss_pred CCceeecccccCCceeeeeechHHHHHHHhcchhHHHHHhcCCccC----------cCCCcceEEEeccCcccccCCCCc
Confidence 222222333322322234433333221 2345554333333 233457789999999998533210
Q ss_pred hhhcCChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcC-CccccccccccccCCCCCCCCCCCCCCCCCcccCCCCC
Q 004765 505 AFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNF 583 (732)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~p-G~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~ 583 (732)
+ ..+.....++.|||.++|+++| |+|-+ -.---|-...|...+..+... .....+
T Consensus 326 a------------------~VltYK~~~~YkmA~~FmLA~PyG~~RV-MSSFaF~~~D~~PP~~~~~~i-----~SP~Fn 381 (504)
T KOG2212|consen 326 A------------------SVLTYKDARLYKMAVGFMLAHPYGFTRV-MSSFAFDVNDWVPPPNNNGVI-----KSPTFN 381 (504)
T ss_pred c------------------eEEEecchhhhhhhhhhheecccCcchh-heeeeeecCCCCCCCCCCcce-----ecceeC
Confidence 0 0011123567899999999999 88766 332222223333211110000 001111
Q ss_pred CCcccCcccCCCCccccccHHHHHHHHHHHHHHHHhCCCCCCcEEEecccCCCcEEEEEe-CcEEEEEEcCCCCcccceE
Q 004765 584 SYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER-GNLVFVFNFHWNSSYSDYR 662 (732)
Q Consensus 584 s~~~~r~~~~w~~~~~~~~~~l~~f~r~L~~LR~~~~~l~~g~~~i~~~~~~~~vlaf~R-~~llvv~Nf~~~~~~~~~~ 662 (732)
+-..|.. -|.... -..-++.|..+|..- .+.+...+-++..+-|+|.| +.=.+++|...-.=...+.
T Consensus 382 ~D~tC~~--GWvCEH------RWrqI~~Mv~FrnAV----~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~ 449 (504)
T KOG2212|consen 382 PDTTCGN--GWVCEH------RWRQIRNMVNFRNAV----DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQ 449 (504)
T ss_pred CCCcccC--ceeeec------hHHHHHHHHhhhhhc----CCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHh
Confidence 1122222 344332 234568888888654 23222333356677899999 4667778765211122344
Q ss_pred EcccCCceEEEEEeCCC
Q 004765 663 VGCLKPGKYKIVLDSDD 679 (732)
Q Consensus 663 l~~~~~g~~~~vl~sd~ 679 (732)
.++| +|.|.++++.+.
T Consensus 450 T~LP-AGtYCDviSG~~ 465 (504)
T KOG2212|consen 450 TGLP-AGTYCDVISGDK 465 (504)
T ss_pred cCCC-CCceeeeecccc
Confidence 4554 799999997543
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.88 E-value=4.2e-23 Score=200.53 Aligned_cols=93 Identities=25% Similarity=0.368 Sum_probs=84.6
Q ss_pred EEecCCCCC--CCCCCcHHhHHHhhccccccCCccEEEECCcccCCCC--CCCCCccccccCCCCCCCCHHHHHHHHHHH
Q 004765 216 EAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY--ASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 291 (732)
Q Consensus 216 E~hv~~~~~--~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~--~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~a 291 (732)
|+.+.+|.. ..+.|+|++++ ++|+||++||||+|||+||++++.. .+|||+++||++++|+|||++||++||++|
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~-~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~ 79 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGII-EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAA 79 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHH-HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHH
Confidence 356677643 34679999999 7999999999999999999999864 679999999999999999999999999999
Q ss_pred HHcCCEEEEEecccccCC
Q 004765 292 HELGLLVLMDIVHSHASN 309 (732)
Q Consensus 292 H~~GI~VilDvV~nH~s~ 309 (732)
|++||+||+|+|+||++.
T Consensus 80 h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 80 HARGIKVILDVVINHTSD 97 (166)
T ss_pred HHCCCEEEEEECCCCCCC
Confidence 999999999999999986
No 40
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.86 E-value=7.8e-22 Score=174.29 Aligned_cols=96 Identities=56% Similarity=1.106 Sum_probs=87.6
Q ss_pred cCCcEEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCc-ccccCccc
Q 004765 96 SDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWI 174 (732)
Q Consensus 96 ~~~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~~-~~~~~~~~ 174 (732)
.++|++||+|||+|++|+|+||||+|+...++|+|.+.|+|+++||+..+|...++||++|||+|...+|. .+++||||
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA 82 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWI 82 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcce
Confidence 45689999999999999999999999998899999999999999999988888899999999999986664 58999999
Q ss_pred ceeccCCCCCCCccEEe
Q 004765 175 KFSVQAPGEIPYNGIYY 191 (732)
Q Consensus 175 ~~~~~~~~~~~~~~~~~ 191 (732)
++++++|++..|.+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (99)
T cd02854 83 KYVTQDKETALYDGVFW 99 (99)
T ss_pred eEEEeCCCCcceeeEEC
Confidence 99999999887877775
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.84 E-value=1.3e-19 Score=198.02 Aligned_cols=307 Identities=24% Similarity=0.350 Sum_probs=201.0
Q ss_pred ccCCcEEcCCc-EEEEEeCCCcC-------eEEEEe-------ecCCCC------CcccccccCCCCEEEEEeCCCCCCC
Q 004765 89 EKFGFIRSDTG-ITYREWAPGAK-------SASLIG-------DFNNWN------PNADIMTQNEFGVWEIFLPNNADGS 147 (732)
Q Consensus 89 ~~~G~~~~~~g-v~f~~WAP~A~-------~V~L~g-------dfn~w~------~~~~~m~~~~~GvW~i~ip~~~~g~ 147 (732)
.+||+|+..+| +.|-.|.|.-. .|+|.. ||-.-+ +...++.+...-.|-+ +.+...|.
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgV-v~GlraGt 104 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGV-VAGLRAGT 104 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeeh-hhccCCCC
Confidence 47999999999 79999999754 777763 332211 1123566665567744 56665664
Q ss_pred CCCCCCCEEEEEeeCCCCccc----ccCcccceeccCCCCCCCccEEeCCCc------cccccccC-------CCCCCCC
Q 004765 148 PPIPHGSRVKIHMDTPSGIKD----SIPAWIKFSVQAPGEIPYNGIYYDPPE------EEKYVFQH-------PQPKKPK 210 (732)
Q Consensus 148 ~~i~hg~~Yk~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------~~~~~~~ 210 (732)
. -.-|+.|..+.....|... .+..-..|.+..|. -+||.+. |..|--+. .-+..+.
T Consensus 105 r-~q~GsfYwLry~d~~~~~~~I~DpLaySlPyGvfaPA------ElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~ 177 (811)
T PF14872_consen 105 R-DQAGSFYWLRYRDQDGEVQIIRDPLAYSLPYGVFAPA------ELYDLERLQRRRADLDYFEATGAADPSDGIPRVPA 177 (811)
T ss_pred c-ccccceEEEEEccCCCCeEEecccccccCcccccChH------HhhchHhHhhhhhhHHHHHhhccccCCCCCcccCC
Confidence 3 4558999988766556532 22111123333332 3555542 11221111 1134568
Q ss_pred CceEEEEecCCCCCCCCCCcHHhHHHhhccccc---------------cCCccEEEECCcccC-----------------
Q 004765 211 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIK---------------RLGYNAVQIMAVQEH----------------- 258 (732)
Q Consensus 211 ~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk---------------~LGv~~I~L~Pi~e~----------------- 258 (732)
+..|-|+||+..|++ ||+.|++ +.-.+|. =.||+|||||||-..
T Consensus 178 P~nILQiHv~TAsp~---GtlaGLT-~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---GTLAGLT-RIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred CceeEEEecCCCCCC---cchHHHH-HHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 899999999999887 8888888 3433332 279999999998542
Q ss_pred --------------------------CCCCCCCCcccc--ccCCCCC-CCC--HHHHHHHHHHHHH---cCCEEEEEecc
Q 004765 259 --------------------------SYYASFGYHVTN--FFAPSSR-CGT--PDDLKSLIDKAHE---LGLLVLMDIVH 304 (732)
Q Consensus 259 --------------------------~~~~~~GY~~~~--~~a~d~~-~Gt--~~d~k~LV~~aH~---~GI~VilDvV~ 304 (732)
|...+|||++.= .-+++|. ++| |+||-.||.++|. ..|.||+|+|+
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 112379999843 3334443 233 8999999999996 78999999999
Q ss_pred cccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCc
Q 004765 305 SHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGL 384 (732)
Q Consensus 305 nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~ 384 (732)
.|+-.....-++. .|+. ++. ++ +.++|+.+|.||..|++.-+.=++ +|+||+|+|++...-+
T Consensus 334 GHADNQ~~~LLn~------~flk-GPn----MY-GQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~----- 395 (811)
T PF14872_consen 334 GHADNQALDLLNR------RFLK-GPN----MY-GQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKF----- 395 (811)
T ss_pred ccccchhhHhhhh------hhcc-CCc----cc-cccccccChHHHHHHHHHHHhhcc-cCCceeEeccccccee-----
Confidence 9998765433332 2222 111 11 258999999999999999999999 9999999999864421
Q ss_pred cccccCCcccccCcccChhHHHHHHHHHHhhhccCCC---EEEEEecCCCCCC
Q 004765 385 QVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE---AVSIGEDVSGMPT 434 (732)
Q Consensus 385 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~---~~~iaE~~~~~p~ 434 (732)
|+...+..+..+ .||.++.+.+..+.+. .++|-|+-..||.
T Consensus 396 -------fnplt~~ve~DD--~YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP~ 439 (811)
T PF14872_consen 396 -------FNPLTGRVEYDD--AYLLAMSDVVQEIGGARRLPFTIFEDGRPWPQ 439 (811)
T ss_pred -------ecccccccccch--HHHHHHHHHHhhccccceeEEEEecCCCcCCc
Confidence 122222222223 3899999999888653 6889999766664
No 42
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.69 E-value=3e-17 Score=202.29 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=83.6
Q ss_pred CceEEEEecCCCCCCCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHH
Q 004765 211 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDK 290 (732)
Q Consensus 211 ~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~ 290 (732)
+..+|-+.... .++|.+++ ++||||++||||+|||+||+++...++|||+++||++|+|+|||.++|++||++
T Consensus 743 P~atyrlq~~~------~~tf~~~~-~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ 815 (1693)
T PRK14507 743 PRATYRLQFHK------DFTFADAE-AILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAA 815 (1693)
T ss_pred cceeEEEEeCC------CCCHHHHH-HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHH
Confidence 45577776553 38999999 899999999999999999999765578999999999999999999999999999
Q ss_pred HHHcCCEEEEEecccccCC
Q 004765 291 AHELGLLVLMDIVHSHASN 309 (732)
Q Consensus 291 aH~~GI~VilDvV~nH~s~ 309 (732)
||++||+||||+|+||++.
T Consensus 816 ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 816 LKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred HHHCCCEEEEEecccccCC
Confidence 9999999999999999984
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.68 E-value=4.6e-15 Score=177.78 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=75.9
Q ss_pred CCcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEEe
Q 004765 228 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG----TPDDLKSLIDKAHEL-GLLVLMDI 302 (732)
Q Consensus 228 ~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~G----t~~d~k~LV~~aH~~-GI~VilDv 302 (732)
.|+|.+.. ++|++|++||||+||||||++-.. +++.|++.||+.+||.|| +.+||++||++||++ ||+||+|+
T Consensus 128 mG~~~~w~-~~L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 128 LGPLSEWE-PRLRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 48998887 899999999999999999997654 568999999999999995 899999999999997 99999999
Q ss_pred cccccCCCc
Q 004765 303 VHSHASNNV 311 (732)
Q Consensus 303 V~nH~s~~~ 311 (732)
|+|||+.++
T Consensus 206 V~NHTa~ds 214 (1464)
T TIGR01531 206 VFNHTANNS 214 (1464)
T ss_pred eecccccCC
Confidence 999999987
No 44
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=4.9e-15 Score=165.28 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=76.1
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 309 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~ 309 (732)
+|..-. +.||||++|||.|+|++||+..-..+.|||||+|...|+|.+|+.+.|.+||.++|++||++|+|+|+||++.
T Consensus 17 tF~~A~-~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 17 TFADAR-ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CHHHHH-HhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 777777 7999999999999999999998777889999999999999999999999999999999999999999999987
Q ss_pred C
Q 004765 310 N 310 (732)
Q Consensus 310 ~ 310 (732)
.
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 6
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.55 E-value=6e-15 Score=127.30 Aligned_cols=79 Identities=33% Similarity=0.673 Sum_probs=65.7
Q ss_pred cCCcEEcCC--cEEEEEeCCCcCeEEEEeecCC-CCCcccccc-cCCCCEEEEEeCCCCCCCCCCCCC-CEEEEEeeCCC
Q 004765 90 KFGFIRSDT--GITYREWAPGAKSASLIGDFNN-WNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPS 164 (732)
Q Consensus 90 ~~G~~~~~~--gv~f~~WAP~A~~V~L~gdfn~-w~~~~~~m~-~~~~GvW~i~ip~~~~g~~~i~hg-~~Yk~~~~~~~ 164 (732)
+||+|+.++ +++|++|||+|++|+|+++|++ |....++|+ +.+.|+|+++||.. +++| ..|+|+|+...
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~------~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD------LPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC------GTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC------cCCCCEEEEEEEEeCC
Confidence 589999886 7999999999999999999999 888889999 68999999999953 5677 49999999887
Q ss_pred Cc-ccccCccc
Q 004765 165 GI-KDSIPAWI 174 (732)
Q Consensus 165 ~~-~~~~~~~~ 174 (732)
|. ...+||||
T Consensus 75 g~~~~~~DPYA 85 (85)
T PF02922_consen 75 GETPEVVDPYA 85 (85)
T ss_dssp TEEEEET-TT-
T ss_pred CcEEEEeCCCC
Confidence 53 46788875
No 46
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.50 E-value=1.1e-13 Score=124.52 Aligned_cols=94 Identities=31% Similarity=0.660 Sum_probs=79.1
Q ss_pred hhhcccccCCcEEcC----CcEEEEEeCCCcCeEEEEeecCCCCCcccccccCC-CCEEEEEeCCCCCCCCCCCCCCEEE
Q 004765 83 AFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRVK 157 (732)
Q Consensus 83 ~f~~~y~~~G~~~~~----~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~-~GvW~i~ip~~~~g~~~i~hg~~Yk 157 (732)
.+++.|+.||+|..+ ++++||+|||+|++|+|+++||+|.....+|++.+ .|+|++++|. +++|..|+
T Consensus 2 ~~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~-------~~~~~~Y~ 74 (106)
T cd02855 2 THERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPG-------LGEGELYK 74 (106)
T ss_pred cchhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECC-------CCCCCEEE
Confidence 456778899999988 78999999999999999999999977677999876 9999999995 34566899
Q ss_pred EEeeCCCC-cccccCcccceeccCCCC
Q 004765 158 IHMDTPSG-IKDSIPAWIKFSVQAPGE 183 (732)
Q Consensus 158 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 183 (732)
|++...+| .....|||++.+.+.++.
T Consensus 75 ~~v~~~~g~~~~~~DPYa~~~~~~~~~ 101 (106)
T cd02855 75 YEILGADGHLPLKADPYAFYSELRPGT 101 (106)
T ss_pred EEEECCCCCEEEeeCCCceeeEeCCCC
Confidence 99987543 457889999988887664
No 47
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.47 E-value=1.5e-13 Score=122.52 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=75.8
Q ss_pred CCcEEcCCcEEEEEeCCCcCeEEEEeecCCCCC----cccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCC-CC
Q 004765 91 FGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-SG 165 (732)
Q Consensus 91 ~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~~----~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~-~~ 165 (732)
||+++..+|++|++|||+|++|.|++ |++|+. ..++|.+.++|+|+++|++. .+|..|+|+++++ +.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~-------~~g~~Y~y~i~~~~~~ 72 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGD-------LEGYYYLYEVKVYKGE 72 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCc-------cCCcEEEEEEEEeceE
Confidence 69999889999999999999999999 888862 35789998999999999974 4577999999876 33
Q ss_pred cccccCcccceeccCCCCCCCccEEeCCC
Q 004765 166 IKDSIPAWIKFSVQAPGEIPYNGIYYDPP 194 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (732)
.....|||++.+..+.. .|++.|++
T Consensus 73 ~~~~~DPyA~~~~~~~~----~s~i~d~~ 97 (100)
T cd02860 73 TNEVVDPYAKALSANGE----RSVDLDDK 97 (100)
T ss_pred EEEEcCcccEeEeeCCC----ceEECChH
Confidence 44788999998876543 57888774
No 48
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.38 E-value=1.4e-12 Score=116.91 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=66.5
Q ss_pred cCCcEEcCCcEEEEEeCCCcCeEEEEeecCCCC-CcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCC-----
Q 004765 90 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP----- 163 (732)
Q Consensus 90 ~~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~-~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~----- 163 (732)
+||+++.++|++|++|||+|++|.|++ |+++. ...++|++.++|+|+++|++.. +|..|+|+|+++
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~-------~g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIK-------AGQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCC-------CCCEEEEEECCccCccc
Confidence 489999989999999999999999999 76664 4467899888999999999743 577999999882
Q ss_pred ----CCcccccCcccceecc
Q 004765 164 ----SGIKDSIPAWIKFSVQ 179 (732)
Q Consensus 164 ----~~~~~~~~~~~~~~~~ 179 (732)
+.....+||||+.++.
T Consensus 73 ~~~~~~~~~~~DPYA~~~~~ 92 (103)
T cd02856 73 GLRFNPAKLLLDPYARALDG 92 (103)
T ss_pred CcccCCCeEEecCCcceEcC
Confidence 2234567888877653
No 49
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=99.37 E-value=7.9e-13 Score=116.61 Aligned_cols=89 Identities=36% Similarity=0.608 Sum_probs=72.0
Q ss_pred EEecccCCCcEEEEEeC-----cEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCCCCccccCCCcceeecccccC
Q 004765 628 YVSRKDEGDRVIVFERG-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYD 702 (732)
Q Consensus 628 ~i~~~~~~~~vlaf~R~-----~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~ 702 (732)
|+.+.+.+++|+||.|. .+|||+||++...+.+|++++|.+|+|+++||||+..|||++..... .+. .
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~~~-~v~---~--- 73 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGNSG-EVT---V--- 73 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSETS-EEE---E---
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCcccccCc-eEE---E---
Confidence 67788889999999993 39999999975478899999999999999999999999998763322 111 1
Q ss_pred CCCeEEEEEecCcEEEEEEEe
Q 004765 703 DQPHSFLVYAPSRTAVVYALA 723 (732)
Q Consensus 703 ~~~~~~~l~lp~~s~~vl~~~ 723 (732)
...+.++|+|||++++||+.+
T Consensus 74 ~~~g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 74 DSNGRITVTLPPYSALVLKLK 94 (95)
T ss_dssp ETTSEEEEEESTTEEEEEEEE
T ss_pred eeCCEEEEEECCCEEEEEEEc
Confidence 123349999999999999875
No 50
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.28 E-value=2.1e-11 Score=105.19 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=66.2
Q ss_pred CcEEcC-CcEEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCccccc
Q 004765 92 GFIRSD-TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSI 170 (732)
Q Consensus 92 G~~~~~-~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~~~~~~ 170 (732)
|++..+ +|++|++|||+|++|.|++. + + ...+|.+.+.|+|++++++. . |..|+|+++. .....
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~-~--~~~~m~~~~~G~W~~~v~~~-~-------g~~Y~y~v~~---~~~~~ 65 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D-G--EEIPMQRDGDGWFEAEVPGA-A-------GTRYRYRLDD---GTPVP 65 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C-C--CcccCccCCCcEEEEEeCCC-C-------CCeEEEEECC---CcCCC
Confidence 778776 78999999999999999983 3 3 35789999999999999965 4 6699999973 24678
Q ss_pred CcccceeccCCCCCCCccEEeCC
Q 004765 171 PAWIKFSVQAPGEIPYNGIYYDP 193 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~ 193 (732)
|||+++....+.. +|+++||
T Consensus 66 DP~a~~~~~~~~~---~s~v~~~ 85 (85)
T cd02853 66 DPASRFQPEGVHG---PSQVVDP 85 (85)
T ss_pred CCccccCCCCCCC---CeEeeCc
Confidence 8999886544433 5888875
No 51
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.15 E-value=3.5e-11 Score=143.12 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=72.5
Q ss_pred hhhhhcccccCCcEEcCCcEEEEEeCCCcCeEEEEeecCCCCCcccccccC-CCCEEEEEeCCCCCCCCCCCCCCEEEEE
Q 004765 81 LAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIH 159 (732)
Q Consensus 81 l~~f~~~y~~~G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~-~~GvW~i~ip~~~~g~~~i~hg~~Yk~~ 159 (732)
.+.+.+.|+.||+|....|++|+||||+|++|+|+||||+ +..++|.+. +.|+|+++|| ... |..|||+
T Consensus 11 ~g~~~~~~~~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~~~-------g~~YKy~ 80 (726)
T PRK05402 11 AGRHHDPFSVLGPHPTGAGLVVRALLPGAEEVWVILPGGG--RKLAELERLHPRGLFAGVLP-RKG-------PFDYRLR 80 (726)
T ss_pred hCccCCHHHhcCCCCCCCcEEEEEECCCCeEEEEEeecCC--CccccceEcCCCceEEEEec-CCC-------CCCeEEE
Confidence 3567899999999998889999999999999999999995 677899864 6899999999 655 5689999
Q ss_pred eeCCCCc-ccccCcccce
Q 004765 160 MDTPSGI-KDSIPAWIKF 176 (732)
Q Consensus 160 ~~~~~~~-~~~~~~~~~~ 176 (732)
|.+ +|. ....+||+..
T Consensus 81 i~~-~g~~~~k~DPyaf~ 97 (726)
T PRK05402 81 VTW-GGGEQLIDDPYRFG 97 (726)
T ss_pred EEe-CCceeEeccccccC
Confidence 988 664 4677888863
No 52
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.14 E-value=1.8e-10 Score=105.98 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=62.1
Q ss_pred CcEEcCCcEEEEEeCCCcCeEEEEeecCCCCC----cccccccCC---CCEEEEEeCCCCCCCCCCCCCCEEEEEeeC--
Q 004765 92 GFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNE---FGVWEIFLPNNADGSPPIPHGSRVKIHMDT-- 162 (732)
Q Consensus 92 G~~~~~~gv~f~~WAP~A~~V~L~gdfn~w~~----~~~~m~~~~---~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~-- 162 (732)
|+++.++|++|++|||+|++|.|++ |++|+. ...+|.+.+ +|+|+++|++.. +|..|+|+|++
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~-------~g~~Y~y~v~g~~ 72 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLK-------PGQLYGYRVDGPF 72 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCC-------CCCEEEEEECCCC
Confidence 7888889999999999999999999 888752 245787654 699999999754 56799999986
Q ss_pred --CCCc-----ccccCcccceecc
Q 004765 163 --PSGI-----KDSIPAWIKFSVQ 179 (732)
Q Consensus 163 --~~~~-----~~~~~~~~~~~~~ 179 (732)
..|. ...+||||+.+..
T Consensus 73 ~p~~g~~~~~~~~~~DPYA~a~~~ 96 (119)
T cd02852 73 EPEQGHRFDPSKVLLDPYAKAVSG 96 (119)
T ss_pred CCCcccccCCCcEEECCCcCeEcC
Confidence 2232 1267888877643
No 53
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.99 E-value=1.3e-09 Score=93.27 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=50.5
Q ss_pred cEEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCC-EEEEEeeCCCCcccccCcccce
Q 004765 99 GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGS-RVKIHMDTPSGIKDSIPAWIKF 176 (732)
Q Consensus 99 gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~-~Yk~~~~~~~~~~~~~~~~~~~ 176 (732)
-++|++|||.|++|+|+|+||+|+ ..+|++.+.|+|+++++ ... |. .|||.+++ .....||.+..
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~-------G~y~Ykf~vdg---~~~~~DP~~~~ 68 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRP-------GRYEYKFVVDG---EWVIVDPNAAA 68 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEe-CCC-------CcEEEEEEECC---EEeeCCCCCCc
Confidence 389999999999999999999997 57899988899999997 323 44 89998864 23334554443
No 54
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.93 E-value=3.5e-09 Score=91.29 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=48.7
Q ss_pred CcEEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCC-CEEEEEeeCCCCcccccCcccce
Q 004765 98 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPSGIKDSIPAWIKF 176 (732)
Q Consensus 98 ~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg-~~Yk~~~~~~~~~~~~~~~~~~~ 176 (732)
+.++|++|||.|++|+|+|+||+|. .++|++.++|+|+++++.... | .+|+|.+++ ....||+++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~--~~~m~~~~~G~W~~~v~~l~~-------g~Y~Y~~~vdg----~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG--SHPMTKDEAGVWSVTTGPLAP-------GIYTYSFLVDG----VRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc--cEeCeECCCeEEEEEECCCCC-------cEEEEEEEECC----eEecCCCCCc
Confidence 4599999999999999999999653 578999999999999964322 2 256666653 3334554443
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.69 E-value=1e-07 Score=102.33 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=103.9
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccC-CCCCCCCCccccccCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~-~~~~~~GY~~~~~~a~d~~~G--t~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-..+. +.|+.|+++|+|+|.+-=-... ..|.| -+-+..-+-.....+ +-|-|+.+|++||++||+|.-=+.++.
T Consensus 17 ~~~~~~-~~l~~l~~~~~N~V~~qVr~~gda~Y~S-~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 17 SKEQID-EMLDDLKSAGFNAVFVQVRPRGDALYPS-DIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEEeCcEEEecc-cccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 445555 8999999999999986321111 01111 011111111111111 357899999999999999998774443
Q ss_pred cCCCccccccCCCCCCCCccccCCCCCcc-----cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccc
Q 004765 307 ASNNVLDGLNMFDGTDGHYFHSGSRGYHW-----MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 381 (732)
Q Consensus 307 ~s~~~~~~~~~~dg~~~~yf~~~~~g~~~-----~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~ 381 (732)
..... .......+.++.....+... ..+..-||.++||||+||++.++--++.|.|||+.||-.-.. ...
T Consensus 95 ~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp-~~~ 169 (311)
T PF02638_consen 95 NAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYP-PPS 169 (311)
T ss_pred CCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccccc-ccc
Confidence 32211 00001111221111111100 012245999999999999999999999999999999943211 111
Q ss_pred cCccccccCCcccccC-----cccC-------hhHH-HHHHHHHHhhhccCCCEEEEE
Q 004765 382 HGLQVAFTGNYSEYFG-----FATD-------VDAV-VYLMLVNDMIHGLYPEAVSIG 426 (732)
Q Consensus 382 ~g~~~~~~~~~~~~~g-----~~~~-------~~~~-~~l~~~~~~v~~~~p~~~~ia 426 (732)
.|....-...|..+.| ...+ .+.+ .|++++.+.||+++|++.+=.
T Consensus 170 ~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~si 227 (311)
T PF02638_consen 170 FGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSI 227 (311)
T ss_pred CCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 1211000011222222 1111 1222 689999999999999865533
No 56
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.57 E-value=2.6e-07 Score=78.57 Aligned_cols=60 Identities=33% Similarity=0.455 Sum_probs=50.9
Q ss_pred CcEEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004765 98 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 164 (732)
Q Consensus 98 ~gv~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~ 164 (732)
++++|++|||+|++|.|+++||+| ...++|++...|+|++.|+... +++..|+|++.+..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~------~~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS------PGKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCC------CCCeEEEEEEeCCC
Confidence 479999999999999999999885 3568999988999999999643 25779999998654
No 57
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.54 E-value=9.8e-08 Score=104.32 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=72.5
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCC------HHHHHHHHHHHH-HcCCEEEEE
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------PDDLKSLIDKAH-ELGLLVLMD 301 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt------~~d~k~LV~~aH-~~GI~VilD 301 (732)
|.|.+-. ++|+.++++|||.|+++|+++-... +--|.+.|...++|.|.. .++++++|.+++ +.||.+|.|
T Consensus 19 G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G~S-~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 19 GPFSDWE-KHLKVISEKGYNMIHFTPLQERGES-NSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred CCHhHHH-HHHHHHHHcCCcEEEecccccCCCC-CCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 7777776 7999999999999999999997653 356999999999999875 379999999995 799999999
Q ss_pred ecccccCCCcc
Q 004765 302 IVHSHASNNVL 312 (732)
Q Consensus 302 vV~nH~s~~~~ 312 (732)
||+|||+.+++
T Consensus 97 vV~NHtA~nS~ 107 (423)
T PF14701_consen 97 VVLNHTANNSP 107 (423)
T ss_pred EeeccCcCCCh
Confidence 99999999873
No 58
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=5.2e-06 Score=95.19 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=69.6
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEE
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG------TPDDLKSLIDKAHE-LGLLVLMD 301 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~G------t~~d~k~LV~~aH~-~GI~VilD 301 (732)
|-+.+-. .+|.-+|+.|||.|+++||+|-.. ++--|...|-..+++.|. +.+|.++||+.||+ -||--|-|
T Consensus 139 Gpl~eWe-prL~va~e~gYNmIHfTPlqelG~-S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 139 GPLDEWE-PRLRVAKESGYNMIHFTPLQELGL-SRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred CChhhhh-HHHHHHHHcCCceEeeeeHHHhcc-CCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 5555554 688899999999999999999764 445689999888888887 79999999999996 69999999
Q ss_pred ecccccCCCc
Q 004765 302 IVHSHASNNV 311 (732)
Q Consensus 302 vV~nH~s~~~ 311 (732)
||+||++.++
T Consensus 217 vV~NHtAnns 226 (1521)
T KOG3625|consen 217 VVYNHTANNS 226 (1521)
T ss_pred hhhhccccCC
Confidence 9999999986
No 59
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.45 E-value=8.9e-07 Score=76.88 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCCCCCcE-EEec-ccCCCcEEEEEe----CcEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCC
Q 004765 608 FDRAMQHLEEKYGFMTSEHQ-YVSR-KDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPL 681 (732)
Q Consensus 608 f~r~L~~LR~~~~~l~~g~~-~i~~-~~~~~~vlaf~R----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~ 681 (732)
|||+||+||+++|+|+.+.. .+.. ...++.++++.| +.++|++||++ ++ .+++ ....++.++.|+...
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~-~~---~~~~--~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSD-EP---VTVP--EGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SS-S----EEEE--TSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCC-Cc---EEcc--CCCCCeEEEcCCCcc
Confidence 79999999999999998833 2322 134566888888 47999999995 22 3343 445567777765433
Q ss_pred CCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEE
Q 004765 682 FGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVY 720 (732)
Q Consensus 682 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl 720 (732)
+++ .++|||.+++||
T Consensus 75 ~~~------------------------~~~L~p~~~~v~ 89 (89)
T PF11941_consen 75 AGG------------------------AGTLPPWSVVVL 89 (89)
T ss_dssp E--------------------------EEEE-TTEEEEE
T ss_pred ccc------------------------CceECCCEEEEC
Confidence 222 588999999986
No 60
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.35 E-value=1.6e-05 Score=90.44 Aligned_cols=187 Identities=17% Similarity=0.253 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEecc--cccCCCccccccCC-----------CCCCCCccccCCCCCcccCCCCCCCCCCHH
Q 004765 282 DDLKSLIDKAHELGLLVLMDIVH--SHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 348 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI~VilDvV~--nH~s~~~~~~~~~~-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~~e 348 (732)
++++++.+.||++||++|-|+.+ ++-|.+.......| -|.+|.+|... |. .|+.+.+|+..-+
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~--GQ--~WG~P~y~w~~l~ 273 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET--GQ--LWGNPVYNWDALR 273 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc--cC--cCCCCCcCHHHHH
Confidence 34566777899999999999975 33343331111111 36666677543 32 4777777654211
Q ss_pred H--HHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 004765 349 V--LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 426 (732)
Q Consensus 349 v--~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~ia 426 (732)
- -+..++-++.=++ .+|.+|+|-+-.+... .-++.+- -....|.....+..+++..+...+ +++.+||
T Consensus 274 ~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~~---~~a~~G~~v~~p~~~l~~~l~~e~----~~~~vig 343 (497)
T PRK14508 274 KDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAGE---KTAINGRWVPGPGKDLFEAVKEEL----GDLPIIA 343 (497)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeecCCHHHHHHHHHHHh----CCCCEEE
Confidence 1 2234555555555 7999999987543211 0111110 000112222333445666555444 6799999
Q ss_pred ecCCCCCCceecccc-CC-cccCcccchhhHHHHHHHHhcCCchhhhhhhhhhhcccccccceeecccccccccc
Q 004765 427 EDVSGMPTFCIPVQD-GG-VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 499 (732)
Q Consensus 427 E~~~~~p~~~~~~~~-gg-~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~ 499 (732)
|+.+.-|.-.+.... -| .|+. ++ .+.... ..... + + ...++..+|.|+.+||++.+
T Consensus 344 EDLG~vp~~V~~~l~~~gi~g~~------Vl-----~f~~~~---~~~~~-~-~-p~~~~~~~v~~~~THD~~Tl 401 (497)
T PRK14508 344 EDLGVITPDVEELRDRFGFPGMK------IL-----QFAFDG---DSDNP-Y-L-PHNYPRNSVVYTGTHDNDTT 401 (497)
T ss_pred eECCCCCHHHHHHHHHcCCCccE------EE-----EecCCC---CCCCC-C-C-CcCCCCCeEEECCCCCCHHH
Confidence 999765554433222 12 1111 10 000000 00000 0 1 13557789999999999865
No 61
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.25 E-value=3.2e-06 Score=78.91 Aligned_cols=125 Identities=24% Similarity=0.234 Sum_probs=82.1
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc--c-cCCCccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS--H-ASNNVLD 313 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n--H-~s~~~~~ 313 (732)
+.+++||++|+|+|.+..=-- +.+-|-|+.-....|.++ .+-|+++|++||++||+|+.=+-++ . +...|++
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h----~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH----GGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc----cEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCc
Confidence 577899999999998754211 113366777777888888 7889999999999999999655444 1 1223333
Q ss_pred ccc-CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 004765 314 GLN-MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 373 (732)
Q Consensus 314 ~~~-~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~ 373 (732)
+.. .-+|+.. .......+.|-..++| ...+++++..++--++.|.+||+=||.
T Consensus 79 W~~~~~~G~~~----~~~~~~~~~~~~~c~n---s~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 79 WFVRDADGRPM----RGERFGYPGWYTCCLN---SPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred eeeECCCCCCc----CCCCcCCCCceecCCC---ccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 321 2233320 0001111224445555 245689999999999999999998883
No 62
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=98.18 E-value=4.3e-06 Score=70.96 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=42.6
Q ss_pred EEEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004765 100 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 162 (732)
Q Consensus 100 v~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~ 162 (732)
|+|+..+ .|++|+|+|+||+|+. ..||++..+| |+++++ ...|. ..|||.+++
T Consensus 4 v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g~------y~YkF~Vdg 56 (79)
T cd02859 4 TTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPGK------YQYKFIVDG 56 (79)
T ss_pred EEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCCC------EEEEEEECC
Confidence 7888888 8999999999999987 6899998878 999886 22232 378888753
No 63
>PLN02950 4-alpha-glucanotransferase
Probab=98.16 E-value=0.00012 Score=88.58 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=82.0
Q ss_pred EEEEEeCCC---cCeEEEEee---cCCCCCcc-cccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCcccccCc
Q 004765 100 ITYREWAPG---AKSASLIGD---FNNWNPNA-DIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPA 172 (732)
Q Consensus 100 v~f~~WAP~---A~~V~L~gd---fn~w~~~~-~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~~~~~~~~ 172 (732)
|+|++-+|+ -++|+|+|+ ..+|+... .+|.......|++.+.-... . -.-.|||.+...+|....-.
T Consensus 155 V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~-~----~~~EYKyv~~~~~g~v~WE~- 228 (909)
T PLN02950 155 VRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKS-D----FPIKYKYALQTAEGLVSLEL- 228 (909)
T ss_pred EEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCC-C----ceEEEEEEEEcCCCceEEee-
Confidence 899999984 678999984 56898654 56776678899999963211 1 12489998876555321000
Q ss_pred ccceeccCCCCCCCccEEe-CCCccccccccCCCCCCCCCceEEEEecCCCCCC--CCCCcHHhHHHhhccccccCCccE
Q 004765 173 WIKFSVQAPGEIPYNGIYY-DPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNA 249 (732)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~IYE~hv~~~~~~--~~~g~~~~~~~~~L~ylk~LGv~~ 249 (732)
-..+....|........++ .+. ..++. +.+...-++ +|+-+-... -++|+|.++. +.++.+++.|.+.
T Consensus 229 g~NR~~~~p~~~~~~~~~~~~~~----~~~~~--~~~R~~Gi~--~~l~SLrS~~s~GIGDf~dl~-~~id~~a~~G~~~ 299 (909)
T PLN02950 229 GVNRELSLDSSSGKPPSYIVASD----GAFRE--MPWRGAGVA--VPVFSIRSEEDVGVGEFLDLK-LLVDWAVKSGLHL 299 (909)
T ss_pred CCCceeecCcccCCceEEEeccc----ccccC--CCccceEEE--EecccCCCCCCCCeeCHHHHH-HHHHHHHHcCCCE
Confidence 0011111221111111111 111 11111 111122122 233222222 3789999888 8999999999999
Q ss_pred EEECCcccC
Q 004765 250 VQIMAVQEH 258 (732)
Q Consensus 250 I~L~Pi~e~ 258 (732)
|||+||...
T Consensus 300 ~QilPl~~t 308 (909)
T PLN02950 300 VQLLPVNDT 308 (909)
T ss_pred EEECCCCCC
Confidence 999999653
No 64
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=1.9e-05 Score=86.33 Aligned_cols=180 Identities=19% Similarity=0.240 Sum_probs=105.6
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCC-CCCC-----CCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHS-YYAS-----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 303 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~-~~~~-----~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV 303 (732)
+=.++. +.|+.|+.||+|+|+.-=.-... .|.| .++. +..+.++ ++-|-|..+|++||++||+|+-=+-
T Consensus 62 ~~~el~-~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~-~~~~~~~---~g~DpLa~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 62 QRQELK-DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL-PGVLGVD---PGYDPLAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred cHHHHH-HHHHHHHHcCCceeEEEEecCccccccccccccccCc-CcccCCC---CCCChHHHHHHHHHhcCCeeeechh
Confidence 335666 79999999999999854222110 0111 1222 1111122 2347799999999999999997776
Q ss_pred ccccCCCccccccCCCCCCCCccccCCCC----CcccC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccccc
Q 004765 304 HSHASNNVLDGLNMFDGTDGHYFHSGSRG----YHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMM 378 (732)
Q Consensus 304 ~nH~s~~~~~~~~~~dg~~~~yf~~~~~g----~~~~w-~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~ 378 (732)
+--++....... ...+.+......+ .+..| ...-||-++|||+++|.+.+.--+..|.|||..||---.+
T Consensus 137 ~~~~a~~~s~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~- 211 (418)
T COG1649 137 PYRMAPPTSPLT----KRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYY- 211 (418)
T ss_pred hcccCCCCChhH----hhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecc-
Confidence 665555431100 0111111111111 01112 3356899999999999999999999999999999975432
Q ss_pred ccccCccccccCC--------cccccCcccChh---------HHHHHHHHHHhhhccCCCEEEE
Q 004765 379 YTHHGLQVAFTGN--------YSEYFGFATDVD---------AVVYLMLVNDMIHGLYPEAVSI 425 (732)
Q Consensus 379 ~~~~g~~~~~~~~--------~~~~~g~~~~~~---------~~~~l~~~~~~v~~~~p~~~~i 425 (732)
+..|..+ +...-+...+.. .-.|++.++..||+.+|++.+=
T Consensus 212 ------~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~s 269 (418)
T COG1649 212 ------PIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFS 269 (418)
T ss_pred ------cCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEE
Confidence 1111111 001001112222 1268999999999999997653
No 65
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.99 E-value=1.6e-05 Score=90.86 Aligned_cols=196 Identities=18% Similarity=0.254 Sum_probs=102.1
Q ss_pred CCCcH-HhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCH------------------------
Q 004765 227 IINTY-ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTP------------------------ 281 (732)
Q Consensus 227 ~~g~~-~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~------------------------ 281 (732)
++|+| .++. +.++.+++.|+..++|.|+.......++-|.+.+=|+.+|-|=++
T Consensus 13 GIGDfg~dl~-~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e~~~~~~~~~~~~~~~~~~~ 91 (496)
T PF02446_consen 13 GIGDFGDDLY-QFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPEFGLLDEAEEIEELAELRDA 91 (496)
T ss_dssp SS--SSHHHH-HHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHHTTSS-----GGGS-S---S
T ss_pred ceecHHHHHH-HHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhhccccchhhhhhhccccccc
Confidence 79999 7887 899999999999999999998766666688888888887766320
Q ss_pred --------------------------------------------------------------------------------
Q 004765 282 -------------------------------------------------------------------------------- 281 (732)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (732)
T Consensus 92 ~~VDY~~v~~~K~~~L~~af~~f~~~~~~~~~f~~F~~~~~~wL~~yA~f~al~~~~~~~~w~~WP~~~~~~~~~~~l~~ 171 (496)
T PF02446_consen 92 DRVDYEAVAALKRRALRKAFERFKEQAERREEFEAFCEQNGEWLEDYALFCALKEKFGGAPWREWPEEELRDRDSEALAA 171 (496)
T ss_dssp SB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSGGGS--HHHHTT-HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhcchhHhHHHHHHHHHHhCCCCcccCCHHHHhhhcHHHHHH
Confidence
Q ss_pred --------------------HHHHHHHHHHHHcCCEEEEEeccc--ccCCCccccccCC-----CCCCCCccccCCCCCc
Q 004765 282 --------------------DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLNMF-----DGTDGHYFHSGSRGYH 334 (732)
Q Consensus 282 --------------------~d~k~LV~~aH~~GI~VilDvV~n--H~s~~~~~~~~~~-----dg~~~~yf~~~~~g~~ 334 (732)
++++++.+.|+++||++|.|+.+- +-|.+.......| -|.+|.+|.. .|.
T Consensus 172 ~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~--~GQ- 248 (496)
T PF02446_consen 172 FREEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSP--TGQ- 248 (496)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSS--S-E-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCc--ccc-
Confidence 678889999999999999999853 3333321111222 3666777764 333
Q ss_pred ccCCCCCCCCCCHHH--HHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHH
Q 004765 335 WMWDSRLFNYGSWEV--LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVN 412 (732)
Q Consensus 335 ~~w~~~~ln~~~~ev--~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 412 (732)
.|+.+.+|+..-+- -+.+++-+++-++ .+|++|+|-+..+... ..++. +......|.....+..+++..+.
T Consensus 249 -~WG~P~y~w~~l~~~gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~-W~IP~---~~~~a~~G~~~~~p~~~ll~~l~ 321 (496)
T PF02446_consen 249 -NWGNPPYNWDALKEDGYRWWIDRLRANMR--LFDALRIDHFRGFFRY-WWIPA---GGETAIDGAWVRYPGEDLLAILA 321 (496)
T ss_dssp -EEEEE-B-HHHHHHTTTHHHHHHHHHHHC--C-SEEEEETGGGGTEE-EEEET---T-SSSTT-EEEE--HHHHHHHHH
T ss_pred -cCCCCCcCHHHHHHcCCHHHHHHHHHHHH--hCCchHHHHHHHHHhe-eEecC---CCCCCCCceeecchHHHHHHHHH
Confidence 36666665432111 1234444444444 8999999987654221 11111 01111122222333445666666
Q ss_pred HhhhccCCCEEEEEecCCCCCCce
Q 004765 413 DMIHGLYPEAVSIGEDVSGMPTFC 436 (732)
Q Consensus 413 ~~v~~~~p~~~~iaE~~~~~p~~~ 436 (732)
..... ++.+|||+.+.-|.-+
T Consensus 322 ~e~~r---~~~vigEDLG~vp~~v 342 (496)
T PF02446_consen 322 LESGR---DCLVIGEDLGTVPPEV 342 (496)
T ss_dssp HHHS----S-EEEE--TSS--HHH
T ss_pred HHcCC---CCcEEEeecCCCcHHH
Confidence 55543 7999999987655433
No 66
>PLN02635 disproportionating enzyme
Probab=97.98 E-value=8.2e-05 Score=84.81 Aligned_cols=139 Identities=18% Similarity=0.255 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEec--ccccCCCccccccCC-----------CCCCCCccccCCCCCcccCCCCCCCCCCH-
Q 004765 282 DDLKSLIDKAHELGLLVLMDIV--HSHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSW- 347 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI~VilDvV--~nH~s~~~~~~~~~~-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~~- 347 (732)
++++++-+.||++||++|-|+. +++-|.+.......| -|.+|.||... |. .|+.+.+|+..-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~--GQ--~WG~P~y~w~~l~ 299 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET--GQ--LWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc--cc--cCCCcCcCHHHHH
Confidence 4567788889999999999998 455555542111112 36677777653 32 477777765421
Q ss_pred -HHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 004765 348 -EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 426 (732)
Q Consensus 348 -ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~ia 426 (732)
.--+..++-+++=++ .+|.+|+|-+..+... .-++.+ .-....|.....+..+++. ++.+..+++.+||
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-W~IP~g---~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~vIa 369 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-WAVPAD---AKTAMNGRWKVGPGKSFFD----AIKKAVGKIDIIA 369 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-eeccCC---CCCCCCCeeeeCCHHHHHH----HHHHHcCCCCEEE
Confidence 112244555555555 7899999977543211 001100 0001112223334445554 3455556899999
Q ss_pred ecCCCCCC
Q 004765 427 EDVSGMPT 434 (732)
Q Consensus 427 E~~~~~p~ 434 (732)
|+.+--|.
T Consensus 370 EDLG~I~~ 377 (538)
T PLN02635 370 EDLGVITE 377 (538)
T ss_pred eeCCCCCH
Confidence 99865444
No 67
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.90 E-value=2.1e-05 Score=88.74 Aligned_cols=98 Identities=22% Similarity=0.295 Sum_probs=63.3
Q ss_pred CCceEEEEecCC--CCCCCCCCcHHhHHHhhccccccCCccEEEECCcccCCCCCC-------CCCccccccCC----CC
Q 004765 210 KSLRIYEAHVGM--SSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS-------FGYHVTNFFAP----SS 276 (732)
Q Consensus 210 ~~~~IYE~hv~~--~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~-------~GY~~~~~~a~----d~ 276 (732)
.+-+|||-+--. |-..+.--+..-|+ +-.+-+|++|||..||-|-+-+..+++ -||.-+|-|.+ .-
T Consensus 563 DSqvIYEgFSNFQ~~~t~~~eytN~~IA-~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~pt 641 (809)
T PF02324_consen 563 DSQVIYEGFSNFQDFPTTPSEYTNVVIA-KNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPT 641 (809)
T ss_dssp HT-EEEE---TTB---SSGGGSHHHHHH-HTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-B
T ss_pred hcchhhccccccccCCCChHHHHHHHHH-HhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCC
Confidence 467999965321 11122234566676 788999999999999999988776666 49999988775 46
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 277 RCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 277 ~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
.|||.+||+.-|+++|+.||+||.|||++-..
T Consensus 642 KYGs~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 642 KYGSVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp TTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CCCCHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 79999999999999999999999999998764
No 68
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.86 E-value=0.00056 Score=85.80 Aligned_cols=275 Identities=15% Similarity=0.171 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHcCCEE--EEEeccc--ccCCCcccc-----ccCCCCCCCCccccCCCCCcccCCCCCCCCCCHH--HH
Q 004765 282 DDLKSLIDKAHELGLLV--LMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 350 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI~V--ilDvV~n--H~s~~~~~~-----~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~e--v~ 350 (732)
++++++-+.|+++||+| |-|+.+. +-|.+.+.. +..--|.+|.+|... |. .|+.+.+|+..-. --
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~--GQ--~WG~P~y~w~~l~~~gy 1007 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFNPE--GQ--NWGLPPYDPRALRRDGY 1007 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc--cc--cCCCcCcCHHHHHhcCc
Confidence 46777888899999999 9999763 333333111 112347777777653 33 4777777654211 11
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 004765 351 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 430 (732)
Q Consensus 351 ~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~ 430 (732)
+..++-++.-++ ++|++|+|-+..+... .-++.+-+ ...|.....+..+++..+...... -++.+|||+.+
T Consensus 1008 ~~w~~rlr~~~~--~~~~lRIDH~~G~~r~-W~IP~~~~----a~~G~~v~~P~~~l~~~l~~e~~r--~~~~vIgEDLG 1078 (1221)
T PRK14510 1008 RWFIERIRANMR--HAGALRIDHVRGLERL-FEVPQGAS----AKEGAYLKGPGEELFGQVALESQR--AQCPVIGEDLG 1078 (1221)
T ss_pred HHHHHHHHHHHH--hCCeEEeccHHhhHHh-eeCCCCCC----CCCCeEEECCHHHHHHHHHHHhCc--cCCcEEEeeCC
Confidence 245566666666 8999999987654221 01110000 111212222334556555544432 26899999987
Q ss_pred CCCCceeccc-cCCcccCcccchhhHHHHHHHHhcCCchhhhhhhhhhhcccccccceeecccccccccccccchhhhc-
Q 004765 431 GMPTFCIPVQ-DGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWL- 508 (732)
Q Consensus 431 ~~p~~~~~~~-~gg~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~g~~~~~~~~- 508 (732)
.-|.-.+... .-|+ +.|.+. ++..... +. -..-..|+.++|.|+.+||++.+. ..|-
T Consensus 1079 ~vp~~v~~~l~~~gi-----~g~~Vl-----~Fe~~~~----~~---~~~p~~~~~~~va~t~THD~~Tl~----Gww~~ 1137 (1221)
T PRK14510 1079 TIPSGVRELLAILGI-----LSYRVL-----QFERLGE----GN---FLPPPLYNALAAAYVGTHDLPTLA----GWWEG 1137 (1221)
T ss_pred cCCHHHHHHHHHcCC-----CccEEE-----EeCccCC----CC---CCChhhCCCCcEEECCCCCCHHHH----HHHHC
Confidence 6444332222 1121 011110 0000000 00 001135667889999999998652 1111
Q ss_pred CChhHHHhhhcCCCCCccchhHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCccc
Q 004765 509 MDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKC 588 (732)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~kla~~l~~t~pG~p~l~y~G~E~G~~~~~d~p~~d~~~~~~~~~~gn~~s~~~~ 588 (732)
.+.+.. +.+.....+..+++..+..=+|+-+=|=+|+.+....| |....+..-
T Consensus 1138 ~d~~~r--------------~~l~~~~~~~~~~~~s~s~l~i~plqD~lg~~~r~N~P-------------GT~~~~~nW 1190 (1221)
T PRK14510 1138 VDLSEK--------------EQLGAAEAVIEMLARSPAILVIIQLQDLLGSNVRMNLP-------------GTIRENPNW 1190 (1221)
T ss_pred CCHHHH--------------HHhhHHHHHHHHHHhCCchheeecHHHhhCCccCccCC-------------CCCCCCCCc
Confidence 111000 01112223333445555544554555555654433333 444333333
Q ss_pred CcccCCCCccccccHHHHHHHHHHHHHHH
Q 004765 589 RRRFDLGDADYLRYRGMQEFDRAMQHLEE 617 (732)
Q Consensus 589 r~~~~w~~~~~~~~~~l~~f~r~L~~LR~ 617 (732)
|++++-...+......+...++.|.+.|.
T Consensus 1191 R~rl~~~l~~~~~~~~~~~~l~~l~~~~~ 1219 (1221)
T PRK14510 1191 RRKLSAPVERLTLTQRACARLRGLAEKRG 1219 (1221)
T ss_pred ccccccChhhhccCHHHHHHHHHHHHHhC
Confidence 44444334433344667777788877764
No 69
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.52 E-value=0.0012 Score=73.11 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=95.9
Q ss_pred HhHHHhhccccccCCccEEEECCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 232 ANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 232 ~~~~~~~L~ylk~LGv~~I~L~Pi~e~---~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
..+. +.++.++++||+.+.|=-=+-. ....+.|.+..| ..+| |+.|+.|++.+|++||+.=|=+-+--++
T Consensus 58 ~~i~-~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~----~~kF--P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKIL-ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD----PKKF--PNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHH-HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB----TTTS--TTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHH-HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC----hhhh--CCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 3444 6778889999999866322111 011122322221 2455 4579999999999999999999776666
Q ss_pred CCccccccCCCCCCCCccccCCCCCcc-cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCcccc
Q 004765 309 NNVLDGLNMFDGTDGHYFHSGSRGYHW-MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 387 (732)
Q Consensus 309 ~~~~~~~~~~dg~~~~yf~~~~~g~~~-~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~ 387 (732)
.++. .+. ..+.|....+..... ......||+++|+|+++|.+.+...++++|||.|.+|....+... +
T Consensus 131 ~~S~----l~~-~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~--~---- 199 (394)
T PF02065_consen 131 PDSD----LYR-EHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEA--G---- 199 (394)
T ss_dssp SSSC----HCC-SSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS---S----
T ss_pred chhH----HHH-hCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCC--C----
Confidence 5531 111 112233221111111 112235999999999999999999999999999999987655211 0
Q ss_pred ccCCcccccCcccChhHHHH---HHHHHHhhhccCCCEEEEEec
Q 004765 388 FTGNYSEYFGFATDVDAVVY---LMLVNDMIHGLYPEAVSIGED 428 (732)
Q Consensus 388 ~~~~~~~~~g~~~~~~~~~~---l~~~~~~v~~~~p~~~~iaE~ 428 (732)
+. ........+ +-++-+.+++.+|++++-.=.
T Consensus 200 -----~~----~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~Cs 234 (394)
T PF02065_consen 200 -----SP----SLPEGYHRYVLGLYRLLDRLRARFPDVLIENCS 234 (394)
T ss_dssp -----ST----TS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-B
T ss_pred -----CC----CchHHHHHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 00 000111122 335677788889997765433
No 70
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.42 E-value=0.0019 Score=69.63 Aligned_cols=173 Identities=12% Similarity=0.176 Sum_probs=103.4
Q ss_pred cHHhHHHhhccccccCC--ccEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LG--v~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-.++. +.++.+++.| +++|+|=.=+.. +|.-.+ |..+ .+|-. .++||+++|++|++|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~~~lD~~w~~------~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~ 89 (308)
T cd06593 22 DEEEVN-EFADGMRERNLPCDVIHLDCFWMK------EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-Y 89 (308)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEeccccc------CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-C
Confidence 445665 7888999999 666776543321 222123 4444 47764 579999999999999999876 5
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCCc---ccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccccccc
Q 004765 307 ASNNVLDGLNMF-DGTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 380 (732)
Q Consensus 307 ~s~~~~~~~~~~-dg~~~~yf~~~~~g~~---~~w--~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~ 380 (732)
++.++. .| .+....||.....+.. ..| ....+|+.||++++++.+.++.+++ .|||||-+|....+...
T Consensus 90 i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 90 IAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGERIPTD 164 (308)
T ss_pred CCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCCCcc
Confidence 554431 11 1122233333222211 112 2357999999999999999999888 89999999987654322
Q ss_pred ccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCC--EEEEE
Q 004765 381 HHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE--AVSIG 426 (732)
Q Consensus 381 ~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~--~~~ia 426 (732)
-. -..|. . .-...|.-++.+-+.+.+.+++..++ .+++.
T Consensus 165 ~~----~~~g~-~--~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~ 205 (308)
T cd06593 165 VV----YYDGS-D--GEKMHNYYALLYNKAVYEATKEVKGEGEAVVWA 205 (308)
T ss_pred cc----ccCCC-C--cceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 00 00000 0 00012334455666677777776665 44444
No 71
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.35 E-value=0.00062 Score=73.51 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=85.4
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCcc-ccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHV-TNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~-~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
+-.++. +.++.+++.|| ++|||- ..-.-...++||.. .+ |..|+ +|- +.++||+++|++|++|++-+ .-
T Consensus 21 s~~~v~-~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i-~P 93 (317)
T cd06594 21 GTDKVL-EALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYI-NP 93 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEe-cC
Confidence 556666 68888888776 778875 32110112344421 12 34443 554 46799999999999999954 45
Q ss_pred ccCCCccccccCCCCCCCCccccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 306 HASNNVLDGLNMFDGTDGHYFHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 306 H~s~~~~~~~~~~dg~~~~yf~~~~~g-----~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
++..+.... .-.+....|+.....| ..|.+.+..+|+.||++++...+.++..+.+.|||||-+|+-.
T Consensus 94 ~v~~~~~~~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 94 YLADDGPLY--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGE 166 (317)
T ss_pred ceecCCchh--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 554432110 0122223344433332 1223344679999999999999999988677999999999653
No 72
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.31 E-value=0.00088 Score=71.94 Aligned_cols=128 Identities=21% Similarity=0.389 Sum_probs=83.5
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-.++. +.++.++++|+ +.|+|=-=+. ..+| + |..++ +|-. .++||+++|++|+++++=+-+ +
T Consensus 28 s~~~v~-~~~~~~~~~~iP~d~i~iD~~w~----~~~g----~-f~~d~~~FPd---p~~mi~~l~~~G~k~~l~i~P-~ 93 (303)
T cd06592 28 NQETVL-NYAQEIIDNGFPNGQIEIDDNWE----TCYG----D-FDFDPTKFPD---PKGMIDQLHDLGFRVTLWVHP-F 93 (303)
T ss_pred CHHHHH-HHHHHHHHcCCCCCeEEeCCCcc----ccCC----c-cccChhhCCC---HHHHHHHHHHCCCeEEEEECC-e
Confidence 445666 67888888884 5776642221 1122 2 33443 6653 789999999999999998887 4
Q ss_pred cCCCccccccCCC-CCCCCccccCCCCC----cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVLDGLNMFD-GTDGHYFHSGSRGY----HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~~~~~~~d-g~~~~yf~~~~~g~----~~~w~--~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
++.++. .|. +....||-....|. ...|. ...+|+.||++++.+.+.++..+.+.|||||-+|...
T Consensus 94 i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 94 INTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred eCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 443321 111 22233444333321 11232 3569999999999999999999977999999999764
No 73
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=97.15 E-value=0.014 Score=74.45 Aligned_cols=187 Identities=17% Similarity=0.182 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcC--CEEEEEeccc--ccCCCccccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHH--HH
Q 004765 282 DDLKSLIDKAHELG--LLVLMDIVHS--HASNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 350 (732)
Q Consensus 282 ~d~k~LV~~aH~~G--I~VilDvV~n--H~s~~~~~~~-----~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~e--v~ 350 (732)
++++++-+.|+++| |++|-|+-+- +-|.+.+... ..--|.+|.+|... |. .|+.+.+|+..-+ =-
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~aGAPPD~Fs~~--GQ--~WG~P~y~p~~L~~~gY 461 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGASIGAPPDELNPK--GQ--DWGLPPFDPLELERDGY 461 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCccCCCCCcCccc--cc--cCCCcCcCHHHHHhcCh
Confidence 45666777789999 7889999753 3333321111 12346677777653 33 4777777664221 11
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 004765 351 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 430 (732)
Q Consensus 351 ~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~ 430 (732)
+..++-++.-++ ++|++|+|-+..+... .-++.+- ....|.....+..+++..+. +.+..+++.+|||+.+
T Consensus 462 ~ww~~rlr~~m~--~~g~lRIDH~lGl~Rl-W~IP~g~----ta~~G~yv~yP~~~ll~~la--LEs~r~~~~VIgEDLG 532 (1693)
T PRK14507 462 APFRALLRANMR--HAGALRIDHVMQLMRL-FWIPLGR----SAREGAYVAYPFEPMLAVLA--LESHRNRCLVIGEDLG 532 (1693)
T ss_pred HHHHHHHHHHHH--HCCEEEeccHHhhhHh-cccCCCC----CCCCCeEEECCHHHHHHHHH--HHHhcCCCeEEEecCC
Confidence 244555555566 5899999987554211 1111111 11112222233334444332 1234567899999986
Q ss_pred CCCCceeccc-cCC-cccCcccchhhHHHHHHHHhcCCchhhhhhhhhhhcccccccceeecccccccccc
Q 004765 431 GMPTFCIPVQ-DGG-VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 499 (732)
Q Consensus 431 ~~p~~~~~~~-~gg-~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~ 499 (732)
--|.-.+... .-| .|+ .+. ++..... +. ...-..|..++|.|+.+||++.+
T Consensus 533 tVp~~Vr~~l~~~gi~Gm------~VL-----~Fe~~~~----~~---~~~P~~y~~~sva~tgTHD~pTl 585 (1693)
T PRK14507 533 TVPEGFRDALARAGVLSY------RIL-----YFEREDG----GA---FKPPAAYPADALAAVTTHDLPTL 585 (1693)
T ss_pred CCCHHHHHHHHHcCCCCc------eEE-----EeeecCC----CC---CCCcccCcCCeEEECCCCCCHhH
Confidence 5443332221 112 111 110 0010000 00 01124567789999999999865
No 74
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.13 E-value=0.003 Score=71.93 Aligned_cols=129 Identities=19% Similarity=0.288 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH---------HcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHH
Q 004765 340 RLFNYGSWEVLRFLLSNARWWLE---------EYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLML 410 (732)
Q Consensus 340 ~~ln~~~~ev~~~l~~~l~~Wl~---------e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~ 410 (732)
.++|-+||.|+..-+.++-|.+. +..+||+|+|||..+ |.+ .|+.
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV-----------------------dAD---lLqi 197 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV-----------------------DAD---LLQI 197 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS------------------------TH---HHHH
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc-----------------------CHH---HHHH
Confidence 56888999999999999999997 678999999999766 223 3343
Q ss_pred HHHhhhcc---C------CCEEEEEecCCC-CCCceeccccCCcccCcccchhhHHHHHHHHhcC-Cchhhhhhh-hhhh
Q 004765 411 VNDMIHGL---Y------PEAVSIGEDVSG-MPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR-DEDWKMGAI-VHTM 478 (732)
Q Consensus 411 ~~~~v~~~---~------p~~~~iaE~~~~-~p~~~~~~~~gg~gfd~~~~~~~~~~~~~~l~~~-~~~~~~~~~-~~~~ 478 (732)
..+.+++. . -+-+.|-|.|+. .|..........+-+|..++..+.. .|... .....+..+ ..++
T Consensus 198 a~dyfkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~~g~~qL~mD~~~~~~l~~----sL~~~~~~R~~l~~li~~sl 273 (809)
T PF02324_consen 198 AGDYFKAAYGVDKNDANANKHLSILEAWSSNDPDYVKDTGNPQLTMDNGLRLALLY----SLTRPSNNRSGLEPLITNSL 273 (809)
T ss_dssp HHHHHHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHHTTSSSBEEEHHHHHHHHH----HTSS-TTC---CTHHHHSSS
T ss_pred HHHHHHHHhCCCcChhhHhhhheeeeccccCChHHHhcCCCceeeecHHHHHHHHH----HhcCCccccccHHHHhhhhh
Confidence 43333332 1 256899999975 2332222222335566666555432 22221 112222222 2233
Q ss_pred ccccc------ccceeeccccccccc
Q 004765 479 TNRRW------LEKCVAYAESHDQAL 498 (732)
Q Consensus 479 ~~~~~------~~~~v~~~esHD~~r 498 (732)
.+|.- ......|+.+||...
T Consensus 274 vnR~~d~~en~a~pNYsFvrAHDsev 299 (809)
T PF02324_consen 274 VNRSNDSTENEAQPNYSFVRAHDSEV 299 (809)
T ss_dssp SECSEE--SSESS-EEEES-BSSTTT
T ss_pred cccccCCcCCcccCceeeeecccHHH
Confidence 33222 113467999999864
No 75
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.12 E-value=0.0028 Score=69.14 Aligned_cols=94 Identities=24% Similarity=0.385 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCEEEEEecccccCCC-ccccc--cCC-CCCCCCccccCCCCCc----ccC--CCCCCCCCCHHHHHH
Q 004765 283 DLKSLIDKAHELGLLVLMDIVHSHASNN-VLDGL--NMF-DGTDGHYFHSGSRGYH----WMW--DSRLFNYGSWEVLRF 352 (732)
Q Consensus 283 d~k~LV~~aH~~GI~VilDvV~nH~s~~-~~~~~--~~~-dg~~~~yf~~~~~g~~----~~w--~~~~ln~~~~ev~~~ 352 (732)
+.++||+++|++|++|++=+.+ ++..+ +.... ..+ .+....||.....|.. ..| .+..+|+.||++++.
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 5789999999999999985554 22211 10000 001 1222234443333321 123 346799999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEcccccc
Q 004765 353 LLSNARWWLEEYKFDGFRFDGVTSM 377 (732)
Q Consensus 353 l~~~l~~Wl~e~gvDGfR~D~~~~m 377 (732)
..+.++.+++++|||||.+|+....
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCcc
Confidence 9999999998899999999987643
No 76
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.97 E-value=0.0091 Score=68.39 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccc--ccCCCcccccc----------C-CCCCCCCccccCCCCCcccCCCCCCCCCCHH
Q 004765 282 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLN----------M-FDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 348 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI~VilDvV~n--H~s~~~~~~~~----------~-~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~e 348 (732)
++++++-+.|+.+||++|-|+.+- +-|.+...... . .+|.+|.||... |. .|+.+.+|+..-+
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~--GQ--~WG~P~y~w~~l~ 287 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQ--GQ--NWGLPPYDWNVLK 287 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCccccc--CC--CCCCCCcCHHHHH
Confidence 355667777889999999999764 33333211000 1 334446677653 32 4777777764211
Q ss_pred --HHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 004765 349 --VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 426 (732)
Q Consensus 349 --v~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~ia 426 (732)
--+..++-++.=++ .+|++|+|-+..+... .-++.+. -....|.....+..+++..+....... +.+||
T Consensus 288 ~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~-w~IP~g~---~ta~~G~wv~~Pg~~l~~~l~~e~~~~---~~vIa 358 (513)
T TIGR00217 288 ARGYEWWIKRLGANMQ--YADILRIDHFRGFVSL-WWVPAGE---STAFNGAWVHYPGDDFFNILANESKDN---LKIIG 358 (513)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeEeCCHHHHHHHHHHHcCCC---CcEEe
Confidence 11234455555555 7999999987543211 1111111 001112223334455666565554321 78999
Q ss_pred ecCCCCCC
Q 004765 427 EDVSGMPT 434 (732)
Q Consensus 427 E~~~~~p~ 434 (732)
|+.+--|.
T Consensus 359 EDLG~v~~ 366 (513)
T TIGR00217 359 EDLGTVPE 366 (513)
T ss_pred eeCCCCCH
Confidence 99865443
No 77
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.80 E-value=0.011 Score=63.12 Aligned_cols=175 Identities=23% Similarity=0.224 Sum_probs=97.8
Q ss_pred HHhhccccccCCccEEEECCcccCC-CCCCCCCccccccC--CCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCc
Q 004765 235 RDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFA--PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 311 (732)
Q Consensus 235 ~~~~L~ylk~LGv~~I~L~Pi~e~~-~~~~~GY~~~~~~a--~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~ 311 (732)
.++.|+.|++-|+|+|-+ +-- .+|.-.|....--+ +...-....|+++|+++||++||.+|.=+|. -++.
T Consensus 15 ~~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~---FkD~ 87 (316)
T PF13200_consen 15 LDKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVV---FKDP 87 (316)
T ss_pred HHHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEE---ecCh
Confidence 347889999999999954 221 12222333222111 1111112579999999999999999999883 1111
Q ss_pred cccccCCCCCCCCccccCCCCCcccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCcccccc
Q 004765 312 LDGLNMFDGTDGHYFHSGSRGYHWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 389 (732)
Q Consensus 312 ~~~~~~~dg~~~~yf~~~~~g~~~~w--~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~ 389 (732)
. +.. ..+.|-.....|..|.- +..-+|..+++|++|++++++...+ .|||...||-+-.=- .+.....
T Consensus 88 ~--la~---~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRFP~---~~~~~~l- 157 (316)
T PF13200_consen 88 V--LAE---AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRFPD---EGRLSGL- 157 (316)
T ss_pred H--Hhh---hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeecCC---CCccccc-
Confidence 0 000 01112111222222210 1234788999999999999999998 899999999874211 0100000
Q ss_pred CCcccccCcccChhHH-HHHHHHHHhhhccCCCEEEEEecC
Q 004765 390 GNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDV 429 (732)
Q Consensus 390 ~~~~~~~g~~~~~~~~-~~l~~~~~~v~~~~p~~~~iaE~~ 429 (732)
.|........-.+++ +|++.+++.++.. ++.+=+-.+
T Consensus 158 -~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~--~v~vSaDVf 195 (316)
T PF13200_consen 158 -DYSENDTEESRVDAITDFLAYAREELHPY--GVPVSADVF 195 (316)
T ss_pred -ccCCCCCcchHHHHHHHHHHHHHHHHhHc--CCCEEEEec
Confidence 111100011123455 7999999999876 344444333
No 78
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.76 E-value=0.025 Score=67.01 Aligned_cols=187 Identities=14% Similarity=0.189 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCC--EEEEEeccc--ccCCCccccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHH--H
Q 004765 282 DDLKSLIDKAHELGL--LVLMDIVHS--HASNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--L 350 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI--~VilDvV~n--H~s~~~~~~~-----~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev--~ 350 (732)
++++++.+.|+++|| ++|-|+.+- +-|.+.+... ..--|.+|.+|... |. .|+.+.+|+..-.- -
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~--GQ--~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL--GQ--NWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc--cc--cCCCcCcCHHHHHhcCc
Confidence 567888899999999 679999753 3333321111 12246777777653 32 47777776532111 1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 004765 351 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 430 (732)
Q Consensus 351 ~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~ 430 (732)
+..++-++.-++ ++|++|+|-+..+... .-++.+-+ ...|.....+.-+++..+ ++.+..+++.+|||+.+
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~rl-W~IP~g~~----a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDLG 501 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLLRL-WWIPYGET----ADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDLG 501 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhhee-eecCCCCC----CCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeCC
Confidence 234455555555 6999999987654221 11111111 111222222233344322 22444568999999987
Q ss_pred CCCCceeccc-cCC-cccCcccchhhHHHHHHHHhcCCchhhhhhhhhhhcccccccceeecccccccccc
Q 004765 431 GMPTFCIPVQ-DGG-VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 499 (732)
Q Consensus 431 ~~p~~~~~~~-~gg-~gfd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~esHD~~r~ 499 (732)
.-|.-.+... .-| +|+. ++ ++.... + +. ...-..|+.++|.|+.+||++.+
T Consensus 502 ~Vp~~Vr~~l~~~gi~g~~------Vl-----~Fe~~~-~---~~---~~~P~~y~~~sva~t~THD~pTl 554 (695)
T PRK11052 502 TVPVEIVGKLRDSGVYSYK------VL-----YFENDE-E---GG---FRAPAAYPEQSMATLTTHDLPTL 554 (695)
T ss_pred CCCHHHHHHHHHcCCCCcE------EE-----EecccC-C---CC---CCCcccCcCCeEEECCCCCChhH
Confidence 6444332222 112 1111 10 001000 0 00 01124567789999999999875
No 79
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.74 E-value=0.0068 Score=69.65 Aligned_cols=132 Identities=19% Similarity=0.285 Sum_probs=71.4
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccC------------CCCCCCCHHHHHHHHHHHHHcCCE
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA------------PSSRCGTPDDLKSLIDKAHELGLL 297 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a------------~d~~~Gt~~d~k~LV~~aH~~GI~ 297 (732)
+..... +.|+.|++.-||.||+== |-|.-...+. +..|-=..+-+|.+|++||+.||+
T Consensus 116 ~~~~~~-~~i~~L~~yHIN~~QFYD---------W~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmk 185 (559)
T PF13199_consen 116 SAEDIE-AEIDQLNRYHINGLQFYD---------WMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMK 185 (559)
T ss_dssp GHHHHH-HHHHHHHHTT--EEEETS-----------SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-E
T ss_pred CchhHH-HHHHHHHhhCcCeEEEEe---------eccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcc
Confidence 333443 789999999999999621 2222222222 222333478999999999999999
Q ss_pred EEEEecccccCCCccccccCCCCCCCCccc--cCCCC---C---cccCCC--CCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 004765 298 VLMDIVHSHASNNVLDGLNMFDGTDGHYFH--SGSRG---Y---HWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYKFD 367 (732)
Q Consensus 298 VilDvV~nH~s~~~~~~~~~~dg~~~~yf~--~~~~g---~---~~~w~~--~~ln~~~~ev~~~l~~~l~~Wl~e~gvD 367 (732)
+|.=.-..-+..+. .-+|..+.|+. ..... . ...|.+ ..+|.+|++-|++|+..+...++.+|||
T Consensus 186 am~Ynmiyaa~~~~-----~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFD 260 (559)
T PF13199_consen 186 AMAYNMIYAANNNY-----EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFD 260 (559)
T ss_dssp EEEEEESSEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--
T ss_pred eehhHhhhccccCc-----ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCc
Confidence 98643333222221 11233333221 11110 0 112433 5689999999999999999999999999
Q ss_pred eEEEccccc
Q 004765 368 GFRFDGVTS 376 (732)
Q Consensus 368 GfR~D~~~~ 376 (732)
||.+|.+..
T Consensus 261 G~hlDq~G~ 269 (559)
T PF13199_consen 261 GWHLDQLGN 269 (559)
T ss_dssp EEEEE-S--
T ss_pred eEeeeccCC
Confidence 999999863
No 80
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.62 E-value=0.025 Score=59.42 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=81.1
Q ss_pred HHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCC--CC--CHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 004765 234 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSR--CG--TPDDLKSLIDKAHELGLLVLMDIVHSHASN 309 (732)
Q Consensus 234 ~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~--~G--t~~d~k~LV~~aH~~GI~VilDvV~nH~s~ 309 (732)
.+++.++.++++|+|+|-|.--.+.. ...++. +. ..+.|+++|+.|+++||+||||+-..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~------------~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~---- 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAY------------QEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA---- 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTST------------STTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES----
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHh------------cCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC----
Confidence 45588999999999999986543211 111222 12 36899999999999999999997543
Q ss_pred CccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc----CCCeEEEcccccccccccCcc
Q 004765 310 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY----KFDGFRFDGVTSMMYTHHGLQ 385 (732)
Q Consensus 310 ~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~----gvDGfR~D~~~~m~~~~~g~~ 385 (732)
+.|. .........+...+++.+.++.+...| .|-|| +..... ....
T Consensus 86 -------------~~w~-----------~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~--el~NEP----~~~~ 135 (281)
T PF00150_consen 86 -------------PGWA-----------NGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGW--ELWNEP----NGGN 135 (281)
T ss_dssp -------------TTCS-----------SSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEE--ESSSSG----CSTT
T ss_pred -------------cccc-----------ccccccccchhhHHHHHhhhhhhccccCCCCcEEEE--EecCCc----cccC
Confidence 0110 001112233445566666677777766 23333 211110 0000
Q ss_pred ccccCCcccccCcccChhH-HHHHHHHHHhhhccCCCEEEEEec
Q 004765 386 VAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAVSIGED 428 (732)
Q Consensus 386 ~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~v~~~~p~~~~iaE~ 428 (732)
.. ..| ...+... ..+.+.+.++|++..|+..++.+.
T Consensus 136 ~~--~~w-----~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 136 DD--ANW-----NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp ST--TTT-----SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred Cc--ccc-----ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 00 001 0111222 368899999999999998777766
No 81
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.50 E-value=0.0041 Score=67.28 Aligned_cols=131 Identities=17% Similarity=0.230 Sum_probs=79.3
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-.++. +.+..+++.+| +.|+|=.=+- . +|. -|..++ +|- +.++||+.+|++|++|++=+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~-~-----~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P-~ 87 (317)
T cd06600 22 PQDKVV-EVVDIMQKEGFPYDVVFLDIHYM-D-----SYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP-G 87 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCcceEEEChhhh-C-----CCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeec-c
Confidence 445555 67777777665 6676642111 1 121 123333 554 4579999999999999996543 3
Q ss_pred cCCCccccccCCCCCCCCccccCCCCC---cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVLDGLNMFDGTDGHYFHSGSRGY---HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~~~~~~~dg~~~~yf~~~~~g~---~~~w~--~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
++.+. .......+....||.....+. ...|. +..+|+.||++++...+.++..+.+.|||||-+|...
T Consensus 88 i~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 88 IRVDQ-NYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred ccCCC-CChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 43321 000011222334554333322 11232 3568999999999999999998877999999999754
No 82
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.46 E-value=0.021 Score=67.05 Aligned_cols=133 Identities=13% Similarity=0.019 Sum_probs=81.4
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCC--CCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF--GYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~--GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-+.+. ..|+.|+++|+|+|+|-.+.....++.+ -|-|..+...- +-| +-+.-.+ +|++|++|..=+-+--
T Consensus 332 q~~~L~-~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f---~~~aw~l--~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 332 QDRNID-VLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLF---NRVAWQL--RTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCc---CHHHHHH--HHhhCCEEEEecccee
Confidence 345666 7999999999999999887665443321 13333222221 111 1222222 9999999987665443
Q ss_pred cCCCcc-ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVL-DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~-~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
++-+.. .....++ ....+...++.|..+ ||-.+|+||+.|.++..-.+..+.|||+-||-=.
T Consensus 406 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEecccc
Confidence 332110 0000010 001111235566555 9999999999999999999998899999998643
No 83
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.38 E-value=0.0059 Score=66.07 Aligned_cols=131 Identities=14% Similarity=0.218 Sum_probs=77.4
Q ss_pred cHHhHHHhhccccccCC--ccEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LG--v~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-.++. +.++.+++.| +++|+|= ..+....|+ .-|..|+ +|-. .++||+++|++|++||+-+. -+
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD----~~~~~~~~~---~~f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~ 89 (319)
T cd06591 22 TQEELL-DVAKEYRKRGIPLDVIVQD----WFYWPKQGW---GEWKFDPERFPD---PKAMVRELHEMNAELMISIW-PT 89 (319)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEe----chhhcCCCc---eeEEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CC
Confidence 444555 5677777664 4677653 111111121 1244443 6654 46899999999999999544 44
Q ss_pred cCCCccccccCCCCCCCCccccCCCCC--cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVLDGLNMFDGTDGHYFHSGSRGY--HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~~~~~~~dg~~~~yf~~~~~g~--~~~w~--~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
++.+.... -.+....||.....+. ...|. ...+|+.||++++...+.++.-+.+.|||||-+|...
T Consensus 90 v~~~~~~y---~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 90 FGPETENY---KEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred cCCCChhH---HHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 54432110 0112223443333221 12333 3679999999999988877765656999999999864
No 84
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.22 E-value=0.0075 Score=65.22 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=77.2
Q ss_pred hHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 004765 233 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 309 (732)
Q Consensus 233 ~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~ 309 (732)
++. +.++.+++.|| ++|+|-+=+... .|-. ..-|..+ .+|- +.++||+++|++|++|++-+.+- ++.
T Consensus 30 ~v~-~~~~~~r~~~iP~d~i~ld~~~~~~----~~~~-~~~f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~ 99 (317)
T cd06599 30 ALL-EFIDKCREHDIPCDSFHLSSGYTSI----EGGK-RYVFNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQ 99 (317)
T ss_pred HHH-HHHHHHHHcCCCeeEEEEecccccc----CCCc-eeeeecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccC
Confidence 444 67777887776 777764311100 0100 0113333 4665 46699999999999999955443 433
Q ss_pred CccccccCCCCCCCCccccCCC------CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 310 NVLDGLNMFDGTDGHYFHSGSR------GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 310 ~~~~~~~~~dg~~~~yf~~~~~------g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
+++. .-.+....||-.... +..|...+..+|+.||++++...+.++.-+.+.|||||-+|...
T Consensus 100 ~~~~---y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 100 DHPR---YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CCHH---HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 3210 001122234432221 12222233579999999999999999776666999999999653
No 85
>PRK10426 alpha-glucosidase; Provisional
Probab=95.94 E-value=0.067 Score=63.22 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=83.0
Q ss_pred HhHHHhhccccccCC--ccEEEECCcccCCCCCCCCCccc-cccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 004765 232 ANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVT-NFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 307 (732)
Q Consensus 232 ~~~~~~~L~ylk~LG--v~~I~L~Pi~e~~~~~~~GY~~~-~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~ 307 (732)
.++. +.++.+++.| +++|||- -+..-.+.++|...- || ..| .+|- +.++||+++|++|++|++=+-+- +
T Consensus 221 ~~v~-~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~-~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 221 EVVQ-KKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNW-KWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHH-HHHHHHHHcCCCeeEEEEe-cccccccccccccccccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 3455 6788888888 5889985 222111123343221 22 222 3443 46789999999999999886653 2
Q ss_pred CCCccccccCC-CCCCCCccccCCCCC-----cccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccc
Q 004765 308 SNNVLDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 377 (732)
Q Consensus 308 s~~~~~~~~~~-dg~~~~yf~~~~~g~-----~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m 377 (732)
..+.. .| ++....||..+..|. .|.+....+|+.||++++...+.++..+.+.|||||-.|.-..+
T Consensus 294 ~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 294 ASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred CCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCC
Confidence 22211 11 122234454433322 12333457999999999999998877776699999999986644
No 86
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=95.93 E-value=0.017 Score=62.97 Aligned_cols=133 Identities=13% Similarity=0.144 Sum_probs=78.3
Q ss_pred HHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 004765 231 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 307 (732)
Q Consensus 231 ~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~ 307 (732)
-.++. +.+..+++.|| +.|+|=.=+- ....+ |..++ +|-.|.. ++||+++|++|++|++=+.+ ++
T Consensus 23 ~~~v~-~~~~~~r~~~iP~d~i~lD~~~~-~~~~~--------f~~d~~~FPdp~~-~~mi~~L~~~G~k~~~~i~P-~v 90 (339)
T cd06602 23 VDEVK-EVVENMRAAGIPLDVQWNDIDYM-DRRRD--------FTLDPVRFPGLKM-PEFVDELHANGQHYVPILDP-AI 90 (339)
T ss_pred HHHHH-HHHHHHHHhCCCcceEEECcccc-cCccc--------eecccccCCCccH-HHHHHHHHHCCCEEEEEEeC-cc
Confidence 34555 66777777665 6677632111 11111 22222 4443321 89999999999999997543 33
Q ss_pred CCCc-cccccCC-CCCCCCccccCCCCCc---ccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 308 SNNV-LDGLNMF-DGTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 308 s~~~-~~~~~~~-dg~~~~yf~~~~~g~~---~~w--~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
..+. ......| ++....||.....|.. ..| .+..+|+.||++++...+.++..++++|||||-+|...
T Consensus 91 ~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 91 SANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred ccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 3321 0001111 1222334443333321 122 33568999999999999999999988999999999754
No 87
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.57 E-value=0.018 Score=65.32 Aligned_cols=131 Identities=21% Similarity=0.354 Sum_probs=75.8
Q ss_pred HHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 004765 231 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 307 (732)
Q Consensus 231 ~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~ 307 (732)
-.++. +.++.+++.|| ++|+|-.-+.. .... |..|+ +|- ++++|++.+|++|++|++-+.+ ++
T Consensus 42 ~~~v~-~~i~~~~~~~iP~d~~~iD~~~~~-~~~~--------f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v 107 (441)
T PF01055_consen 42 QDEVR-EVIDRYRSNGIPLDVIWIDDDYQD-GYGD--------FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FV 107 (441)
T ss_dssp HHHHH-HHHHHHHHTT--EEEEEE-GGGSB-TTBT--------T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EE
T ss_pred HHHHH-HHHHHHHHcCCCccceeccccccc-cccc--------ccccccccc---chHHHHHhHhhCCcEEEEEeec-cc
Confidence 34454 67777777776 55554433221 1122 23333 443 7789999999999999998887 34
Q ss_pred CCCccccccCCC-CCCCCccccCCCCC---cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccc
Q 004765 308 SNNVLDGLNMFD-GTDGHYFHSGSRGY---HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 376 (732)
Q Consensus 308 s~~~~~~~~~~d-g~~~~yf~~~~~g~---~~~w~--~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~ 376 (732)
..... ....|+ +....|+.....+. ...|. ...+|+.||++++.+.+.++..++.+|||||-+|....
T Consensus 108 ~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 181 (441)
T PF01055_consen 108 SNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEP 181 (441)
T ss_dssp ETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTT
T ss_pred CCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCc
Confidence 33321 000010 11123333333331 11244 46799999999999999999999988999999998543
No 88
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=95.49 E-value=0.069 Score=57.26 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCcccC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccccccccc-CccccccCCcccccCcccChhHHHHHH
Q 004765 332 GYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHH-GLQVAFTGNYSEYFGFATDVDAVVYLM 409 (732)
Q Consensus 332 g~~~~w-~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~-g~~~~~~~~~~~~~g~~~~~~~~~~l~ 409 (732)
+....| +...+|+.+++.+.+|++-+...++ .|+|||=+|.+.+..+... +.+ + .....+.+.+++
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy~~~~~~~~~--~---------~~~~~~m~~~i~ 194 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAFEYWAENGDN--R---------PGAAAEMIAFVC 194 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhhhhhcccCCc--c---------hhhHHHHHHHHH
Confidence 445678 7788999999999999988777666 7999999999876532110 000 0 001133468999
Q ss_pred HHHHhhhccCCCEEEEE
Q 004765 410 LVNDMIHGLYPEAVSIG 426 (732)
Q Consensus 410 ~~~~~v~~~~p~~~~ia 426 (732)
.+.+.+|+.+|++++|.
T Consensus 195 ~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 195 EIAAYARAQNPQFVIIP 211 (315)
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 99999999999999984
No 89
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.11 Score=59.02 Aligned_cols=87 Identities=22% Similarity=0.381 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccccc--CCCccccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHH
Q 004765 282 DDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLL 354 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI~VilDvV~nH~--s~~~~~~~-----~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~ 354 (732)
+.+.++=.-|+++||.+|-|+.+.=. |.+..... ...-|.+|.+|... | -.|+.+..|++ +. ..
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~~--G--Q~Wg~p~yn~~---~l--~~ 280 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNAQ--G--QDWGLPPYNPE---AL--KK 280 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCccccc--c--cccCCCCCCHH---HH--HH
Confidence 45666667778899999999976533 22221000 01125555555432 2 24777755543 22 12
Q ss_pred HHHHHHHHH-----cCCCeEEEcccccc
Q 004765 355 SNARWWLEE-----YKFDGFRFDGVTSM 377 (732)
Q Consensus 355 ~~l~~Wl~e-----~gvDGfR~D~~~~m 377 (732)
+...+|++. -.+|+.|+|-+..+
T Consensus 281 ~~y~wwierlr~~~~~~~~lRIDHf~Gl 308 (520)
T COG1640 281 DGYDWWIERLRANLKLYGILRIDHFRGL 308 (520)
T ss_pred cccHHHHHHHHHHHHhcCeeeeeeecch
Confidence 233444432 26899999988655
No 90
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=95.41 E-value=0.022 Score=55.03 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCc-----EEEeccc----CCCcEEEEEe--------------CcEEEEEEcCCC
Q 004765 603 RGMQEFDRAMQHLEEKYGFMTSEH-----QYVSRKD----EGDRVIVFER--------------GNLVFVFNFHWN 655 (732)
Q Consensus 603 ~~l~~f~r~L~~LR~~~~~l~~g~-----~~i~~~~----~~~~vlaf~R--------------~~llvv~Nf~~~ 655 (732)
....+++++|++||+++|+++-+. .-+.+.+ ...+||+..- +.+|||||-+|+
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~ 116 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPE 116 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCC
Confidence 466899999999999999887541 1122222 2466888875 239999999963
No 91
>smart00632 Aamy_C Aamy_C domain.
Probab=95.38 E-value=0.095 Score=44.57 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCCcEEEEEe-CcEEEEEEcCCCCcccceEE--cccCCceEEEEEeCCCCCCCCccccCCCcceeecccccCCCCeEEEE
Q 004765 634 EGDRVIVFER-GNLVFVFNFHWNSSYSDYRV--GCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLV 710 (732)
Q Consensus 634 ~~~~vlaf~R-~~llvv~Nf~~~~~~~~~~l--~~~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l 710 (732)
.++++|+|.| +..+|++|.+.. .....+ .+| +|.|+++|.. .-.|. .+ +. ...+.+.+
T Consensus 6 ~~~~~laF~Rg~~g~VaiN~~~~--~~~~~~~t~lp-~G~Y~d~l~g---~~~g~-------~v-~V-----~~~G~~~~ 66 (81)
T smart00632 6 NGDNQIAFERGSKGFVAINRSDS--DLTITLQTSLP-AGTYCDVISG---LCTGK-------SV-TV-----GSNGIATF 66 (81)
T ss_pred CCCeEEEEECCCeEEEEEECCCC--ceEEEEeecCC-CcceEEEecC---cccCC-------EE-EE-----CCCCEEEE
Confidence 3455999999 678899998843 333344 443 5999999863 00111 01 10 01235889
Q ss_pred EecCcE-EEEEE
Q 004765 711 YAPSRT-AVVYA 721 (732)
Q Consensus 711 ~lp~~s-~~vl~ 721 (732)
+|||++ +.|+.
T Consensus 67 ~l~~~~~v~i~~ 78 (81)
T smart00632 67 TLPAGGAVAIHV 78 (81)
T ss_pred EECCCCeEEEEE
Confidence 999999 44443
No 92
>PRK10658 putative alpha-glucosidase; Provisional
Probab=95.02 E-value=0.033 Score=65.95 Aligned_cols=124 Identities=11% Similarity=0.239 Sum_probs=77.0
Q ss_pred hhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccc
Q 004765 237 DVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLD 313 (732)
Q Consensus 237 ~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~ 313 (732)
+.++.+++.|| ++|+|=..+-. +|+-.+ |..| .+|-. .+.||+++|++|++|++-+.+ +++.++.
T Consensus 287 ~~~~~~r~~~iP~d~i~lD~~w~~------~~~~~~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~i~P-~i~~~s~- 354 (665)
T PRK10658 287 SFIDGMAERDLPLHVFHFDCFWMK------EFQWCD-FEWDPRTFPD---PEGMLKRLKAKGLKICVWINP-YIAQKSP- 354 (665)
T ss_pred HHHHHHHHcCCCceEEEEchhhhc------CCceee-eEEChhhCCC---HHHHHHHHHHCCCEEEEeccC-CcCCCch-
Confidence 45566666665 45555432211 121122 2333 34544 467999999999999987665 3333221
Q ss_pred cccCC-CCCCCCccccCCCCCccc---C--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccc
Q 004765 314 GLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 376 (732)
Q Consensus 314 ~~~~~-dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~ 376 (732)
.| .+....||....+|..+. | +...+|+.||++++...+.++.+++ .|||||-.|....
T Consensus 355 ---~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE~ 419 (665)
T PRK10658 355 ---LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGER 419 (665)
T ss_pred ---HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCce
Confidence 11 133345665555554332 3 3467999999999999999999887 8999999996543
No 93
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=94.87 E-value=0.048 Score=59.61 Aligned_cols=129 Identities=20% Similarity=0.295 Sum_probs=79.2
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-.++. +.++.+++.|| ++|+|-.-+.. +|. + |.-++ +|-. .++||+++|++|++|++=+.+ |
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~~------~~~--~-f~~d~~~fPd---p~~m~~~l~~~g~~~~~~~~P-~ 87 (339)
T cd06604 22 PEEEVR-EIADEFRERDIPCDAIYLDIDYMD------GYR--V-FTWDKERFPD---PKELIKELHEQGFKVVTIIDP-G 87 (339)
T ss_pred CHHHHH-HHHHHHHHhCCCcceEEECchhhC------CCC--c-eeeccccCCC---HHHHHHHHHHCCCEEEEEEeC-c
Confidence 445555 67788888776 67777533321 221 1 33443 6654 479999999999999977544 3
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~~~~~~~-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
+..+. ....| .+....||-....|. ...| ....+|+.||++++...+.++..++ .|||||-+|...
T Consensus 88 v~~~~--~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 88 VKVDP--GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred eeCCC--CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 32211 00011 122223443333321 1123 2345899999999999999888775 999999999764
No 94
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=94.54 E-value=0.16 Score=55.82 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004765 285 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 364 (732)
Q Consensus 285 k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~ 364 (732)
++|+..||++|++|++.. + + + .-...+++.|+.+++++.-+++++
T Consensus 67 ~~~~~~A~~~~v~v~~~~-------~-------~----~-----------------~~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-------D-------V----P-----------------LEQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-------c-------c----C-----------------HHHcCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999641 0 0 0 002457899999999999999999
Q ss_pred CCCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhccCCCE
Q 004765 365 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEA 422 (732)
Q Consensus 365 gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~v~~~~p~~ 422 (732)
|+||+-+|-=.- +. ....+.+. ..|++++++.+++..++.
T Consensus 112 gfDGIdIDwE~p-------------~~-----~~~~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 112 FMDGINIDIEQP-------------IT-----KGSPEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred CCCeEEEcccCC-------------CC-----CCcchHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999995210 00 01123333 379999999998875553
No 95
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.52 E-value=0.07 Score=57.74 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=76.9
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-.++. +.++.+++.|| ++|+|=.=+-........|. + |..| .+|-.| ++||+++|++|++|++=+.+-
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPdp---~~mi~~L~~~G~k~~~~v~P~- 93 (317)
T cd06598 22 NWQEVD-DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPDP---AGMIADLAKKGVKTIVITEPF- 93 (317)
T ss_pred CHHHHH-HHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCCH---HHHHHHHHHcCCcEEEEEcCc-
Confidence 344555 67777777775 66665431100000000011 2 3333 466554 689999999999999987532
Q ss_pred cCCCccccccCCCCCCCCc-cccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVLDGLNMFDGTDGHY-FHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~~~~~~~dg~~~~y-f~~~~~g-----~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
++.+++.. -.+....| +.....+ ..|...+..+|+.||++++...+.++..++ .|||||-+|.-.
T Consensus 94 v~~~~~~y---~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~E 164 (317)
T cd06598 94 VLKNSKNW---GEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLGE 164 (317)
T ss_pred ccCCchhH---HHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCCC
Confidence 33222110 01111223 2222211 122234567999999999999999988755 899999999753
No 96
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=94.45 E-value=0.64 Score=50.98 Aligned_cols=178 Identities=14% Similarity=0.064 Sum_probs=99.8
Q ss_pred HHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCC-------CCCCCHHHHHHHHHHHHHcCCEEEEEe-
Q 004765 231 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-------SRCGTPDDLKSLIDKAHELGLLVLMDI- 302 (732)
Q Consensus 231 ~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-------~~~Gt~~d~k~LV~~aH~~GI~VilDv- 302 (732)
...|. +.|+.++.+.+|.++|== ..+.+|.+.+..|=.+. ..|=|.+|+++||+-|.++||.||-.+
T Consensus 17 ~~~ik-~~Id~ma~~KlN~lh~Hl----tDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 17 VDSIK-RTIDAMAYNKLNVLHWHI----TDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred HHHHH-HHHHHHHHhCCcEEEEeE----EcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc
Confidence 34454 688888989999888620 01112333222222221 122289999999999999999999888
Q ss_pred cccccCCCcc--ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccccccc
Q 004765 303 VHSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 380 (732)
Q Consensus 303 V~nH~s~~~~--~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~ 380 (732)
++.|+..-.. ..+.. .+. ..+... + ..-....||..+|++.+++.+++.-.++-|... .=|+
T Consensus 92 ~PGH~~a~~~~~p~l~~-~~~--~~~~~~--~--~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~------~iHi--- 155 (348)
T cd06562 92 TPGHTGSWGQGYPELLT-GCY--AVWRKY--C--PEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDK------YFHL--- 155 (348)
T ss_pred CchhhHHHHHhChhhhC-CCC--cccccc--c--cCCCCccccCCChhHHHHHHHHHHHHHHhcCCc------ceEe---
Confidence 5888854210 00000 000 000000 0 001124689999999999999999999855411 1112
Q ss_pred ccCccccccCCccc---------ccCcccChhHH--HHHHHHHHhhhccCCCEEEEEecCCCC
Q 004765 381 HHGLQVAFTGNYSE---------YFGFATDVDAV--VYLMLVNDMIHGLYPEAVSIGEDVSGM 432 (732)
Q Consensus 381 ~~g~~~~~~~~~~~---------~~g~~~~~~~~--~~l~~~~~~v~~~~p~~~~iaE~~~~~ 432 (732)
|-..-..+.|.. ..|. .+...+ .|++.+.+.|++.....++-.|...+.
T Consensus 156 --GgDE~~~~~w~~~p~~~~~m~~~g~-~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~ 215 (348)
T cd06562 156 --GGDEVNFNCWNSNPEIQKFMKKNNG-TDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNG 215 (348)
T ss_pred --ecCCCCCCcccCCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCC
Confidence 222111122211 0111 122222 488899999999887777777776543
No 97
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=93.75 E-value=0.26 Score=51.43 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 359 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~ 359 (732)
+.+.+++.|..+|++|+||++=+--+|.+.. + ....+++-++.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-------~-----------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-------F-----------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-------c-----------------------cccCCHHHHHHHHHHHHH
Confidence 4689999999999999999998765544321 0 012245667777778888
Q ss_pred HHHHcCCCeEEEcc
Q 004765 360 WLEEYKFDGFRFDG 373 (732)
Q Consensus 360 Wl~e~gvDGfR~D~ 373 (732)
+++.||+||+=+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88889999999994
No 98
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.63 E-value=0.88 Score=49.43 Aligned_cols=166 Identities=13% Similarity=0.210 Sum_probs=95.6
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccc--------------------c--CCCCCCCCHHHHHHH
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNF--------------------F--APSSRCGTPDDLKSL 287 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~--------------------~--a~d~~~Gt~~d~k~L 287 (732)
+...|. +.|+.+..+++|.++|== .+ +|++.+..+ . .....+=|.+|+|+|
T Consensus 15 ~~~~ik-~~id~ma~~K~N~lhlHl-----tD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~ei 87 (326)
T cd06564 15 SMDFLK-DIIKTMSWYKMNDLQLHL-----ND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKEL 87 (326)
T ss_pred CHHHHH-HHHHHHHHcCCceEEEee-----cC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHH
Confidence 344555 788999999999998710 00 122111111 0 112233389999999
Q ss_pred HHHHHHcCCEEEEEe-cccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 004765 288 IDKAHELGLLVLMDI-VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKF 366 (732)
Q Consensus 288 V~~aH~~GI~VilDv-V~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gv 366 (732)
|+-|.++||.||-.+ ++.|+..-. ..+.. +... ..........||..+|++.+++.+.+.-.++-|..
T Consensus 88 v~yA~~rgI~vIPEID~PGH~~a~~----~~~pe-----l~~~--~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~ 156 (326)
T cd06564 88 IAYAKDRGVNIIPEIDSPGHSLAFT----KAMPE-----LGLK--NPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNP 156 (326)
T ss_pred HHHHHHcCCeEeccCCCcHHHHHHH----HhhHH-----hcCC--CcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999877 577874311 11100 0000 00011123568999999999999999999986541
Q ss_pred CeEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhccCCCEEEEEecCC
Q 004765 367 DGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAVSIGEDVS 430 (732)
Q Consensus 367 DGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~-~~~~l~~~~~~v~~~~p~~~~iaE~~~ 430 (732)
.+-.=|+ |-. |........+ -..|++.+.+.|++.....++-.|...
T Consensus 157 ----~~~~~Hi-----GgD--------E~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~ 204 (326)
T cd06564 157 ----KSDTVHI-----GAD--------EYAGDAGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIY 204 (326)
T ss_pred ----CCCEEEe-----ccc--------cccccCccHHHHHHHHHHHHHHHHHcCCeEEEeCCccc
Confidence 0111112 211 1111111122 237999999999988666666666543
No 99
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.61 E-value=0.14 Score=54.66 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=70.8
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccC----CCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEH----SYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDI 302 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~----~~~~~~GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDv 302 (732)
+-.++. +.+..+++.|| ++|+|=-=+-. +.+. -+|. -|..| .+|- +.++||+++|++|++|++-+
T Consensus 23 s~~ev~-~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~-~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYL-ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYG-SGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEeccccccccccccc-CCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEe
Confidence 445555 57777776665 66665211100 0000 0111 13444 3564 45899999999999999988
Q ss_pred cccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 004765 303 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 374 (732)
Q Consensus 303 V~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~ 374 (732)
.+......... .|+. +..........-+...+|+.||+.++...+.+..-+.+.|||||-.|.-
T Consensus 95 ~P~~~~~~~~~---~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 95 HPADGIRAHED---QYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred CCCcccCCCcH---HHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCC
Confidence 77532111100 0100 0000000000001136799999999977777766666699999999953
No 100
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.49 E-value=0.45 Score=51.51 Aligned_cols=147 Identities=17% Similarity=0.145 Sum_probs=79.0
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcccccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 316 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~ 316 (732)
+.+..||+.|+|+|-|=- +-.|.. .-+-+.+...+|.++|++.||+|+||+=++.+-.+-
T Consensus 28 d~~~ilk~~G~N~vRlRv-wv~P~~--------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP----- 87 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRV-WVNPYD--------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP----- 87 (332)
T ss_dssp -HHHHHHHTT--EEEEEE--SS-TT--------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT-----
T ss_pred CHHHHHHhcCCCeEEEEe-ccCCcc--------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC-----
Confidence 688899999999998743 333432 445678999999999999999999999776553321
Q ss_pred CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCccccc
Q 004765 317 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 396 (732)
Q Consensus 317 ~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~ 396 (732)
+....-..|....++--...|.+|-.++|....+ .|+ -.|.|. +.. .+..++-...
T Consensus 88 ------------g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~-~G~---~pd~VQ-VGN---Ein~Gmlwp~---- 143 (332)
T PF07745_consen 88 ------------GKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA-AGV---TPDMVQ-VGN---EINNGMLWPD---- 143 (332)
T ss_dssp ------------TB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH-TT-----ESEEE-ESS---SGGGESTBTT----
T ss_pred ------------CCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH-CCC---CccEEE-eCc---cccccccCcC----
Confidence 0000012344333333334566666666666655 454 466553 110 0111111110
Q ss_pred CcccChhH-HHHHHHHHHhhhccCCCEEEEEe
Q 004765 397 GFATDVDA-VVYLMLVNDMIHGLYPEAVSIGE 427 (732)
Q Consensus 397 g~~~~~~~-~~~l~~~~~~v~~~~p~~~~iaE 427 (732)
|...+.+. ..+|+...++||+..|++.++--
T Consensus 144 g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH 175 (332)
T PF07745_consen 144 GKPSNWDNLAKLLNAGIKAVREVDPNIKVMLH 175 (332)
T ss_dssp TCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11233333 35777888999998888665543
No 101
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.44 E-value=0.32 Score=58.52 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCccc---C--CCCCCCCCCHHHHHHHHHHH-H
Q 004765 285 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNA-R 358 (732)
Q Consensus 285 k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~~ev~~~l~~~l-~ 358 (732)
|+||+.+|++||++|.=+.|.=..+.. ..-.+....||..+..|..+. | .+..+||.||++|+...+.. .
T Consensus 324 k~mi~~l~~~Gikl~~~i~P~i~~d~~----~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~ 399 (772)
T COG1501 324 KQMIAELHEKGIKLIVIINPYIKQDSP----LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKK 399 (772)
T ss_pred HHHHHHHHhcCceEEEEeccccccCCc----hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHh
Confidence 399999999999999877764333221 011123345776666554332 3 35789999999999999644 4
Q ss_pred HHHHHcCCCeEEEcccccc
Q 004765 359 WWLEEYKFDGFRFDGVTSM 377 (732)
Q Consensus 359 ~Wl~e~gvDGfR~D~~~~m 377 (732)
.+++ +|||||-.|.-.-.
T Consensus 400 ~l~d-~Gv~g~W~D~nEp~ 417 (772)
T COG1501 400 NLLD-LGVDGFWNDMNEPE 417 (772)
T ss_pred HHHh-cCccEEEccCCCCc
Confidence 5666 99999999987544
No 102
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=92.87 E-value=0.79 Score=49.24 Aligned_cols=167 Identities=15% Similarity=0.094 Sum_probs=97.5
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCC-----------CCCCCHHHHHHHHHHHHHcCCEE
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-----------SRCGTPDDLKSLIDKAHELGLLV 298 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-----------~~~Gt~~d~k~LV~~aH~~GI~V 298 (732)
+...+. +.|+.+...++|.++|-=. .+.+|.+....|=.+. ..+=|.+|+++||+-|.++||.|
T Consensus 14 ~~~~lk-~~id~ma~~K~N~lhlHl~----D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 14 SVESIK-RTIDVLARYKINTFHWHLT----DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEeee----cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 445565 7889999999999986311 0112222222222211 12347999999999999999999
Q ss_pred EEEe-cccccCCCccccccCCCCC-CCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccc
Q 004765 299 LMDI-VHSHASNNVLDGLNMFDGT-DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 376 (732)
Q Consensus 299 ilDv-V~nH~s~~~~~~~~~~dg~-~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~ 376 (732)
|-.+ ++.|+..-. ..+... ..++- +..+.-....||..+|++.+++.+.+.-+++-|. +-.=|
T Consensus 89 iPEiD~PGH~~a~~----~~~p~l~~~~~~-----~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~------~~~iH 153 (303)
T cd02742 89 IPEIDMPGHSTAFV----KSFPKLLTECYA-----GLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP------DRYLH 153 (303)
T ss_pred EEeccchHHHHHHH----HhCHHhccCccc-----cCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC------CCeEE
Confidence 9888 588885421 111000 00110 0011112246899999999999999999998541 11112
Q ss_pred ccccccCccccccCCcccccCcccChh--HHHHHHHHHHhhhccCCCEEEEEecCC
Q 004765 377 MMYTHHGLQVAFTGNYSEYFGFATDVD--AVVYLMLVNDMIHGLYPEAVSIGEDVS 430 (732)
Q Consensus 377 m~~~~~g~~~~~~~~~~~~~g~~~~~~--~~~~l~~~~~~v~~~~p~~~~iaE~~~ 430 (732)
+ |-. |.+.. .+.. -..|++.+.+.+++.....++-.|...
T Consensus 154 i-----GgD--------E~~~~-~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~ 195 (303)
T cd02742 154 I-----GGD--------EAHFK-QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFD 195 (303)
T ss_pred e-----cce--------ecCCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 2 211 11111 1111 236889999999988766666666543
No 103
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=92.83 E-value=0.18 Score=55.12 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=78.4
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-.++. +.+..+++.|| ++|+|=.=+- -+|. .|..|+ +|- +.+.||+++|++|++|++-+.+--
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~~~~------~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v 88 (339)
T cd06603 22 DQEDVK-EVDAGFDEHDIPYDVIWLDIEHT------DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHI 88 (339)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEChHHh------CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCce
Confidence 445555 67777777665 6666542111 1222 244454 665 448899999999999999876443
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHH--HcCCCeEEEccc
Q 004765 307 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLE--EYKFDGFRFDGV 374 (732)
Q Consensus 307 ~s~~~~~~~~~~-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~ev~~~l~~~l~~Wl~--e~gvDGfR~D~~ 374 (732)
. .+. ....| .+....||.....+. ...| ....+|+.||++++...+.++..+. ..++|||-+|..
T Consensus 89 ~-~~~--~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 89 K-RDD--GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred e-cCC--CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 2 221 00011 122223444333321 1223 2357999999999999999998876 468999999964
No 104
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=92.77 E-value=0.28 Score=53.31 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=69.7
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-.++. +.+..+++.+| ++|||=.=+. . +| .-|..| .+|-.| ++||+++|++|++|++-+.+-
T Consensus 22 ~~~ev~-~v~~~~r~~~IP~D~i~lDidy~----~--~~---~~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~- 87 (332)
T cd06601 22 NRSDLE-EVVEGYRDNNIPLDGLHVDVDFQ----D--NY---RTFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV- 87 (332)
T ss_pred CHHHHH-HHHHHHHHcCCCCceEEEcCchh----c--CC---CceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-
Confidence 334444 55666666554 6776543221 1 22 124444 367555 689999999999999887532
Q ss_pred cCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
+. .| ..+.+.+.-.|+.||++|++..+..+.+.+ .|||||-.|.-.
T Consensus 88 i~----------~g------------~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~DmnE 133 (332)
T cd06601 88 IS----------YG------------GGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMTT 133 (332)
T ss_pred ee----------cC------------ccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCceeecCCCC
Confidence 11 01 111122345789999999998887788777 799999999753
No 105
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=92.47 E-value=2.1 Score=46.63 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=96.1
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCC------------CCCCCHHHHHHHHHHHHHcCCE
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLL 297 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d------------~~~Gt~~d~k~LV~~aH~~GI~ 297 (732)
+...|. +.||.++..++|.++|--.= ..+|...+..|=.+. ..+=|.+|+++||+-|.++||.
T Consensus 16 ~~~~lk-~~id~ma~~KlN~lhlHLtD----~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 16 TVAEVK-RYIDLLALYKLNVLHLHLTD----DQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEEeec----CCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 445555 78889999999999874321 112333332222221 1233799999999999999999
Q ss_pred EEEEe-cccccCCCcc--ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 004765 298 VLMDI-VHSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 374 (732)
Q Consensus 298 VilDv-V~nH~s~~~~--~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~ 374 (732)
||-.+ ++.|+..--. ..+.+ .+.....+. ....+...||..+|++.+++.+.+.-.++-|.-.
T Consensus 91 vIPEiD~PGH~~a~~~~~p~l~~-~~~~~~~~~------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~------- 156 (329)
T cd06568 91 VVPEIDMPGHTNAALAAYPELNC-DGKAKPLYT------GIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGP------- 156 (329)
T ss_pred EEEecCCcHHHHHHHHhChhhcc-CCCCCcccc------ccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCC-------
Confidence 99887 4788753110 00111 111111100 0111234689999999999999999888743211
Q ss_pred ccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecC
Q 004765 375 TSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 429 (732)
Q Consensus 375 ~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~ 429 (732)
+-|-|-. |.... ....-..|++.+.+.+++.....++-.|..
T Consensus 157 ----~iHiGgD--------E~~~~-~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~ 198 (329)
T cd06568 157 ----YIHIGGD--------EAHST-PHDDYAYFVNRVRAIVAKYGKTPVGWQEIA 198 (329)
T ss_pred ----eEEEecc--------cCCCC-chHHHHHHHHHHHHHHHHCCCeEEEECccc
Confidence 1111211 11111 111223689999999998876666655543
No 106
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=91.60 E-value=1.8 Score=45.19 Aligned_cols=87 Identities=16% Similarity=0.241 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWW 360 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~W 360 (732)
+.++..++++||++|++|++=|- ++... . | .--..+++.|+.+++++..+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~--------------~-~--------------~~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP--------------E-F--------------TAALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC--------------c-c--------------hhhhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998542 11100 0 0 00235788999999999999
Q ss_pred HHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhcc
Q 004765 361 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 418 (732)
Q Consensus 361 l~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~ 418 (732)
++++++||+-+|--.- +. ....-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~--------------------~~-~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGP--------------------DV-TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeecc--------------------Cc-cHhHHHHHHHHHHHHHhhc
Confidence 9999999999995210 00 0112346899999999764
No 107
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=91.20 E-value=0.48 Score=57.96 Aligned_cols=129 Identities=13% Similarity=0.234 Sum_probs=77.9
Q ss_pred cHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 230 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~-~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+-..+. +.+..+++.|| ++|||-- .+. .||.+ |..|+ +|-. .++||+++|++|+++|.=+.+ +
T Consensus 199 sq~eV~-eva~~fre~~IP~DvIwlDi----dYm--~g~~~---FTwD~~rFPd---P~~mv~~Lh~~G~kvv~iidP-g 264 (978)
T PLN02763 199 SAKRVA-EIARTFREKKIPCDVVWMDI----DYM--DGFRC---FTFDKERFPD---PKGLADDLHSIGFKAIWMLDP-G 264 (978)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEeh----hhh--cCCCc---eeECcccCCC---HHHHHHHHHHCCCEEEEEEcC-C
Confidence 344555 56777777665 6677631 111 13332 44443 6754 479999999999999875433 3
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCCc---ccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVLDGLNMF-DGTDGHYFHSGSRGYH---WMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~~~~~~~-dg~~~~yf~~~~~g~~---~~w~--~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
+..+ .+...+ .|....+|.....|.. ..|. ..-.||.||++|++..+.++.+++ .|||||-+|+-.
T Consensus 265 I~~d--~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 265 IKAE--EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred CccC--CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCC
Confidence 3221 111111 1222234433333221 2343 345799999999999998888888 899999999854
No 108
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=90.84 E-value=0.64 Score=40.51 Aligned_cols=58 Identities=21% Similarity=0.395 Sum_probs=39.5
Q ss_pred EEEEEeCC--CcCeEEEEe---ecCCCCCc-ccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCC
Q 004765 100 ITYREWAP--GAKSASLIG---DFNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 163 (732)
Q Consensus 100 v~f~~WAP--~A~~V~L~g---dfn~w~~~-~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~ 163 (732)
++|++=+. -.+.|+|+| ++++|++. +.+|...+.+.|++.+.-.. +. ...|||.+...
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~-~~-----~~eYKy~~~~~ 66 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPA-GT-----AIEYKYIKKDG 66 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCC-CC-----eEEEEEEEECC
Confidence 45555433 357999999 58899875 57898888899988775321 11 24788876543
No 109
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.82 E-value=4.2 Score=44.75 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-cccccCCCcc--ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDI-VHSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSN 356 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDv-V~nH~s~~~~--~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~ 356 (732)
|.+|+++||+-|.++||.||-.+ ++.|+..--. ..+.+. +....+.. ........||..+|++.+++.+.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~-~~~~~~~~------~~~~~~~~L~~~~~~t~~f~~~l 156 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCT-GGPGSVVS------VQGVVSNVLCPGKPETYTFLEDV 156 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCC-CCCCcccc------ccCcCCCccCCCChhHHHHHHHH
Confidence 79999999999999999999887 5788853110 001110 00000000 00112346899999999999999
Q ss_pred HHHHHHHcCCCeEEEcccccccccccCccccccCCcccc---------cCcccChhH--HHHHHHHHHhhhccCCCEEEE
Q 004765 357 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEY---------FGFATDVDA--VVYLMLVNDMIHGLYPEAVSI 425 (732)
Q Consensus 357 l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~---------~g~~~~~~~--~~~l~~~~~~v~~~~p~~~~i 425 (732)
+.-.++-|.-. +-|-|-..-+.+.|... .|. .+... ..|++.+.+.+++.....++-
T Consensus 157 l~E~~~lF~~~-----------~iHiGgDE~~~~~w~~~~~~~~~~~~~g~-~~~~~l~~~f~~~~~~~v~~~G~~~i~W 224 (357)
T cd06563 157 LDEVAELFPSP-----------YIHIGGDEVPKGQWEKSPACQARMKEEGL-KDEHELQSYFIKRVEKILASKGKKMIGW 224 (357)
T ss_pred HHHHHHhCCCC-----------eEEEeccccCCcccccCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 99999854311 11223222222222110 111 12222 258899999998876666665
Q ss_pred EecC
Q 004765 426 GEDV 429 (732)
Q Consensus 426 aE~~ 429 (732)
.|..
T Consensus 225 ~d~~ 228 (357)
T cd06563 225 DEIL 228 (357)
T ss_pred eccc
Confidence 5543
No 110
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.52 E-value=2.5 Score=45.32 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=96.0
Q ss_pred cHHhHHHhhccccccCCccEEEECCc--ccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe-cccc
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAV--QEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI-VHSH 306 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi--~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDv-V~nH 306 (732)
+...|. +.++.++.+|+|.++|==- ++.+.....+ .....=|.+|+++|++-|.++||.||--+ ++.|
T Consensus 15 ~~~~lk-~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~--------~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH 85 (301)
T cd06565 15 KVSYLK-KLLRLLALLGANGLLLYYEDTFPYEGEPEVG--------RMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGH 85 (301)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEecceecCCCcccc--------cCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHH
Confidence 444555 7889999999999997311 1111111111 11222379999999999999999999765 3677
Q ss_pred cCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccc
Q 004765 307 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQV 386 (732)
Q Consensus 307 ~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~ 386 (732)
+..- +. . +.|-...... -....+|..+|++.+++.+.+.-.++-|.-.=| |+ |-.+
T Consensus 86 ~~~~----l~-~----~~~~~l~~~~----~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~------HI-----G~DE 141 (301)
T cd06565 86 LEFI----LK-H----PEFRHLREVD----DPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYI------HI-----GMDE 141 (301)
T ss_pred HHHH----Hh-C----cccccccccC----CCCCccCCCChhHHHHHHHHHHHHHHhCCCCeE------EE-----CCCc
Confidence 6431 11 0 0111000000 012468999999999999999999985441111 11 2211
Q ss_pred ccc---CCcccccCccc-ChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 004765 387 AFT---GNYSEYFGFAT-DVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 430 (732)
Q Consensus 387 ~~~---~~~~~~~g~~~-~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~ 430 (732)
-+. +.+....+... ..--..|++.+.+.+++..+..++-+|...
T Consensus 142 ~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~ 189 (301)
T cd06565 142 AYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLR 189 (301)
T ss_pred ccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhc
Confidence 111 11111111111 112247899999999999887776666543
No 111
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=90.33 E-value=0.19 Score=58.28 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCC-CCCCcEEEecc---cCCCcEEEEEeC----cEEEEEEc
Q 004765 608 FDRAMQHLEEKYGF-MTSEHQYVSRK---DEGDRVIVFERG----NLVFVFNF 652 (732)
Q Consensus 608 f~r~L~~LR~~~~~-l~~g~~~i~~~---~~~~~vlaf~R~----~llvv~Nf 652 (732)
...+++++|++++. +..|. +.... ...+.|+||.|+ .+|+|++.
T Consensus 775 v~~~aL~lR~~~~elF~~Gd-Y~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Pr 826 (889)
T COG3280 775 VTAAALRLRREHPELFAGGD-YLPLFAAGPAADHVIAFARGKDDQFAITVAPR 826 (889)
T ss_pred HHHHHHHHHHhchHhhcCCC-eeeecccCchhHHHHHHhhccCCceeEEeehH
Confidence 56788999999976 44443 33222 234779999993 45666654
No 112
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=90.17 E-value=0.5 Score=46.08 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=45.0
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
+.+..++++|+++|-|.= ..+...-+.++.+....-..+..+-+..+.++|.+.||+|++-+-++
T Consensus 24 ~~~~~m~~~GidtlIlq~----~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQW----TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCcEEEEEE----eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 688899999999997762 21222233344442222223567889999999999999999887654
No 113
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=89.78 E-value=1.3 Score=52.61 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=80.4
Q ss_pred CcHHhHHHhhccccccCCcc--EEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 229 NTYANFRDDVLPRIKRLGYN--AVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~--~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
+++..+. +...+++++|+. ++|.-=-+. -+ -.||.-=...|++ ++.+|+.+|++|+++|+=+-++-
T Consensus 308 ~nls~~~-dvv~~~~~agiPld~~~~DiDyM------d~--ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVR-DVVENYRAAGIPLDVIVIDIDYM------DG--YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHH-HHHHHHHHcCCCcceeeeehhhh------hc--ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5677777 788899999886 554221111 11 1343333455666 99999999999999986555332
Q ss_pred cCCCccccccCCC-CCCCCccccCCC------CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 307 ASNNVLDGLNMFD-GTDGHYFHSGSR------GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 307 ~s~~~~~~~~~~d-g~~~~yf~~~~~------g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
..... ...|+ |.....+-.... |..|.-...-.|+.||.+.....+.++..-++.++|||-+|+-.
T Consensus 376 s~~~~---y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 376 STNSS---YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred ccCcc---chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCC
Confidence 21111 01111 111111111111 22222234668999999999988888888888999999999843
No 114
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=88.73 E-value=7.4 Score=40.95 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=94.3
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHH-HHHHH-HHHHHcCCEEEEEecccccCCCccc
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD-LKSLI-DKAHELGLLVLMDIVHSHASNNVLD 313 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d-~k~LV-~~aH~~GI~VilDvV~nH~s~~~~~ 313 (732)
+..|++|+++|+|+|+|-++....+.+. +..-|=++.+.--.+| |-+.+ ....+.|++|..-+..=-
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~gdg~----~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvla------- 88 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDGDGN----ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLA------- 88 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCCCCc----eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhh-------
Confidence 3788999999999999999887654442 2233445555555555 44555 344489999987665311
Q ss_pred cccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccccccccccCccccccCCc
Q 004765 314 GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF-DGVTSMMYTHHGLQVAFTGNY 392 (732)
Q Consensus 314 ~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~-D~~~~m~~~~~g~~~~~~~~~ 392 (732)
|+-....+...........-...-|..-+|++|+.|.++..-...--.|||+=| |-+- + . |+..+. ..
T Consensus 89 ----f~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~-L-~-D~E~~~----~~ 157 (294)
T PF14883_consen 89 ----FDLPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAV-L-S-DFEIAA----IR 157 (294)
T ss_pred ----ccCCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCcc-c-c-chhhhh----hc
Confidence 111111111100000000111245667789999999999999998459999988 3221 1 1 111100 00
Q ss_pred ccccCcccChhHHHHHHHHHHhhhccCCCEEE
Q 004765 393 SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS 424 (732)
Q Consensus 393 ~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~ 424 (732)
.+.........-+.|..++.+.++...|++.+
T Consensus 158 ~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 158 QNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 00000001112258999999999998887554
No 115
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=88.42 E-value=1.6 Score=47.86 Aligned_cols=148 Identities=18% Similarity=0.076 Sum_probs=81.9
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcccccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 316 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~ 316 (732)
+-+.-+|++|...|-|+.-+. .+..-|-=..++|..++..+ .-|=+++|+++|+++||++.+ -+++. +-+
T Consensus 95 qW~~~ak~aGakY~VlTakHH-DGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~--Y~S~~-dw~----- 164 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHH-DGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL--YYSPW-DWH----- 164 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-T-T--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE--EEESS-SCC-----
T ss_pred HHHHHHHHcCCCEEEeehhhc-CccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE--Eecch-Hhc-----
Confidence 566778999999998877553 33333444455555555333 358899999999999999998 23322 111
Q ss_pred CCCCCCCCccccCCCCCcccCCCCCCCCC-CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccc
Q 004765 317 MFDGTDGHYFHSGSRGYHWMWDSRLFNYG-SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEY 395 (732)
Q Consensus 317 ~~dg~~~~yf~~~~~g~~~~w~~~~ln~~-~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~ 395 (732)
.+.|-. ...+.. .......-. ...+.+++..-++-.++.|.+|.+=||+....
T Consensus 165 -----~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~------------------ 218 (346)
T PF01120_consen 165 -----HPDYPP-DEEGDE--NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD------------------ 218 (346)
T ss_dssp -----CTTTTS-SCHCHH--CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC------------------
T ss_pred -----CcccCC-CccCCc--ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc------------------
Confidence 000000 000000 000000000 01245588888999999999999999986321
Q ss_pred cCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 004765 396 FGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 426 (732)
Q Consensus 396 ~g~~~~~~~~~~l~~~~~~v~~~~p~~~~ia 426 (732)
..+.. -...+.+.+++..|++++..
T Consensus 219 -----~~~~~-~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 219 -----PDEDW-DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp -----CCTHH-HHHHHHHHHHHHSTTSEEEC
T ss_pred -----ccccc-CHHHHHHHHHHhCCeEEEec
Confidence 01112 23677788888899888765
No 116
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.09 E-value=1.8 Score=48.98 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-cccccCCCccc---cccCC--CCCCC---CccccCCC---C--CcccCCCCCCCCC
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDI-VHSHASNNVLD---GLNMF--DGTDG---HYFHSGSR---G--YHWMWDSRLFNYG 345 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDv-V~nH~s~~~~~---~~~~~--dg~~~---~yf~~~~~---g--~~~~w~~~~ln~~ 345 (732)
|.+|+++||+-|+++||.||-.| ++.|+..--.. ....+ .|... .|...+.. . ....|....||..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 79999999999999999999887 58887531100 00000 11100 11111110 0 0112334579999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 004765 346 SWEVLRFLLSNARWWLEE 363 (732)
Q Consensus 346 ~~ev~~~l~~~l~~Wl~e 363 (732)
+|++.+||.+.+.-.++-
T Consensus 175 ~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 175 MPSTYRFVDKVIDEIARM 192 (445)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 999999999999998873
No 117
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.03 E-value=1.1 Score=53.44 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=55.7
Q ss_pred hhhcccccCCcEEcCCc-EEEEEeCCCcCeEEEEeecCCCCCccccccc-CCCCEEEEEeCCCCCCCCCCCCCCEEEEEe
Q 004765 83 AFSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPNNADGSPPIPHGSRVKIHM 160 (732)
Q Consensus 83 ~f~~~y~~~G~~~~~~g-v~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~-~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~ 160 (732)
.+.+-+.-||.|..++| +.+|+|-|.|.+|.|+.. . .....+|++ .+.|.|+..+|.. ..|++++
T Consensus 22 ~~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~--~~~~~~~~~~~~~g~f~~~~~~~----------~~y~~~~ 88 (730)
T PRK12568 22 LPADAFAVLGPHPQADGRRQVRVLAPGAEAMGLIDG-R--GKLLARMQASPIDGVFEGILPAD----------GPYRLRI 88 (730)
T ss_pred CcCCchHhcCCcCCCCCcEEEEEECCCCcEEEEEec-C--CccccccEecCCCCeEEEecCCC----------CCEEEEE
Confidence 35667778999988888 699999999999999831 1 122237887 4679999999832 1388887
Q ss_pred eCCCCcccccCcccc
Q 004765 161 DTPSGIKDSIPAWIK 175 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~ 175 (732)
...++.....+||..
T Consensus 89 ~~~~~~~~~~dpy~~ 103 (730)
T PRK12568 89 VWPDVVQEIEDPYAF 103 (730)
T ss_pred EeCCceEEeeccccc
Confidence 754443344456653
No 118
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.84 E-value=0.99 Score=50.00 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=65.1
Q ss_pred HHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEecccccCCCcc
Q 004765 235 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL 312 (732)
Q Consensus 235 ~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~G--t~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~ 312 (732)
.++.|..+|++|+|+|.|..+.-. .++|.=| .-+.|.++|+.|+++||+|||-+.. ++..
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~--------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~P--- 73 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWS--------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAPP--- 73 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHH--------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS----
T ss_pred HHHHHHHHHHcCCCEEEEEEechh--------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEecc-cccc---
Confidence 347888999999999998765311 0111111 2345889999999999999997762 2221
Q ss_pred ccccCCCCCCCCccccCCCCCcccCCC-CCCCCCCHHHHHHHHHHHHHHHHHcC----CCeEEEcc
Q 004765 313 DGLNMFDGTDGHYFHSGSRGYHWMWDS-RLFNYGSWEVLRFLLSNARWWLEEYK----FDGFRFDG 373 (732)
Q Consensus 313 ~~~~~~dg~~~~yf~~~~~g~~~~w~~-~~ln~~~~ev~~~l~~~l~~Wl~e~g----vDGfR~D~ 373 (732)
.++.. . .+..-..+..|....++. ..+++.+|.+|+++...++..++.|+ |-|+-+|.
T Consensus 74 ~Wl~~--~-~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 74 AWLYD--K-YPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp HHHHC--C-SGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred cchhh--h-cccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 22211 0 001111112222222222 34678899999988888777776555 55666654
No 119
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=87.56 E-value=4.9 Score=44.63 Aligned_cols=143 Identities=20% Similarity=0.121 Sum_probs=88.4
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcccccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 316 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~ 316 (732)
+-+.-+|+.|...|-|+.-. |.+..-|-=..++|.+++... .-|=+++|+++|+++||++-+ - |...+ +.
T Consensus 85 ~Wa~~~k~AGakY~vlTaKH-HDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~--Y--~S~~D---W~- 154 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKH-HDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL--Y--HSLFD---WF- 154 (384)
T ss_pred HHHHHHHHcCCCeEEeeeee-cCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE--E--cCHHH---hC-
Confidence 56678899999999877654 233333444556777776655 458899999999999999988 2 22211 10
Q ss_pred CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHH---HHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcc
Q 004765 317 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFL---LSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYS 393 (732)
Q Consensus 317 ~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l---~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~ 393 (732)
.+.|... ++........+...+|+ ..-++-.+..||-|.+=||..-.-.
T Consensus 155 -----~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~--------------- 206 (384)
T smart00812 155 -----NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAP--------------- 206 (384)
T ss_pred -----CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCc---------------
Confidence 1122110 00011112334556777 7888888999999999999752100
Q ss_pred cccCcccChhHHHHHHHHHHhhhccCCCE--EEEE
Q 004765 394 EYFGFATDVDAVVYLMLVNDMIHGLYPEA--VSIG 426 (732)
Q Consensus 394 ~~~g~~~~~~~~~~l~~~~~~v~~~~p~~--~~ia 426 (732)
... --++++.+.+++..|++ ++|.
T Consensus 207 --------~~~-~~~~~l~~~~~~~qP~~~~vvvn 232 (384)
T smart00812 207 --------DDY-WRSKEFLAWLYNLSPVKDTVVVN 232 (384)
T ss_pred --------cch-hcHHHHHHHHHHhCCCCceEEEE
Confidence 000 02466777888888987 4443
No 120
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=87.45 E-value=1.3 Score=48.25 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004765 286 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 365 (732)
Q Consensus 286 ~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~g 365 (732)
..|++||++|++|+-=+.+...... ...+ ..|- .+++.+..+++.|...++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~-------------~~~~------------~lL~-~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV-------------EWLE------------DFLK-KDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch-------------HHHH------------HHhc-cCcccchHHHHHHHHHHHHhC
Confidence 6789999999999975543221000 0000 0010 113444566677777788899
Q ss_pred CCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhccCCCEEEE
Q 004765 366 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAVSI 425 (732)
Q Consensus 366 vDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~v~~~~p~~~~i 425 (732)
+||+=+|.=... +...+.+. ..|++++++.+++..|+..+|
T Consensus 104 fDGw~iN~E~~~-------------------~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 104 FDGWLINIETEL-------------------GDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCceEeeeeccC-------------------CcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999853211 01123333 379999999999988876665
No 121
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=87.25 E-value=2.3 Score=37.52 Aligned_cols=60 Identities=20% Similarity=0.419 Sum_probs=42.8
Q ss_pred EEEEEeCCC---cCeEEEEee---cCCCCCc-ccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004765 100 ITYREWAPG---AKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 164 (732)
Q Consensus 100 v~f~~WAP~---A~~V~L~gd---fn~w~~~-~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~ 164 (732)
|+|++-.|. -+.|+|+|+ +.+|++. +.+|...+...|++.++-.... .-..|||.+...+
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~-----~~ieYKyvi~~~~ 68 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDS-----FPFEYKYIIANKD 68 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCC-----ccEEEEEEEEeCC
Confidence 689998885 468999996 5689874 4689888888998888632111 0247999886544
No 122
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=87.21 E-value=1.2 Score=39.05 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=40.6
Q ss_pred EEEEEeCC--CcCeEEEEeecC---CCCC-cccccccC----CCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004765 100 ITYREWAP--GAKSASLIGDFN---NWNP-NADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 165 (732)
Q Consensus 100 v~f~~WAP--~A~~V~L~gdfn---~w~~-~~~~m~~~----~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~ 165 (732)
|+|++-+. -.+.|.|+|+.. +|++ .+.+|... ...+|+++|.-.. +. -..|||.+...+|
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~-----~~eYKy~i~~~~g 73 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GT-----PFEYKYVIKDADG 73 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TS-----EEEEEEEEEETTS
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CC-----EEEEEEEEEeCCC
Confidence 67777332 357899999875 7998 45788864 4589999985221 11 2378988866554
No 123
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=86.52 E-value=1 Score=38.05 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.4
Q ss_pred CCCcEEEEEe----CcEEEEEEcCC
Q 004765 634 EGDRVIVFER----GNLVFVFNFHW 654 (732)
Q Consensus 634 ~~~~vlaf~R----~~llvv~Nf~~ 654 (732)
..++|++|.| +.++||+|.+.
T Consensus 7 P~~gvYvYfR~~~~~tVmVilN~n~ 31 (78)
T PF10438_consen 7 PQDGVYVYFRYYDGKTVMVILNKND 31 (78)
T ss_dssp -BTTEEEEEEEESSEEEEEEEE-SS
T ss_pred ccCCEEEEEEEcCCCEEEEEEcCCC
Confidence 4577999999 57999999883
No 124
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.18 E-value=3.7 Score=44.29 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=73.3
Q ss_pred HHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCC-----CCCCCHHHHHHHHHHHHHcCCEEEEEe-cc
Q 004765 231 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-----SRCGTPDDLKSLIDKAHELGLLVLMDI-VH 304 (732)
Q Consensus 231 ~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-----~~~Gt~~d~k~LV~~aH~~GI~VilDv-V~ 304 (732)
...|. +.|+.++.+++|.++|-=. ...+|.+.+..|=.+. ..+=|.+|+++||+-|.++||.||-.+ ++
T Consensus 17 ~~~ik-~~Id~ma~~KlN~lh~Hlt----Dd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~P 91 (311)
T cd06570 17 VAVIK-RQLDAMASVKLNVFHWHLT----DDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVP 91 (311)
T ss_pred HHHHH-HHHHHHHHhCCeEEEEEEe----cCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCc
Confidence 34454 7889999999998776310 0112222222222211 223489999999999999999999887 57
Q ss_pred cccCCCccccccCCCC---CCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004765 305 SHASNNVLDGLNMFDG---TDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 364 (732)
Q Consensus 305 nH~s~~~~~~~~~~dg---~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~ 364 (732)
.|+..-. ..+.. ....+.. . ..+......||..+|++.+++.+.+.-.++-|
T Consensus 92 GH~~a~~----~~ypel~~~~~~~~~--~--~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 92 GHASAIA----VAYPELASGPGPYVI--E--RGWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred cchHHHH----HhCHHhccCCCcccc--c--cccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 8885311 11110 0000000 0 01111234699999999999999999998854
No 125
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=86.14 E-value=2.2 Score=33.69 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=24.9
Q ss_pred CcEEEEEEcCCCCcccceEEcccCCceEEEEEeCCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEEE
Q 004765 644 GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 722 (732)
Q Consensus 644 ~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~~ 722 (732)
+.++|++|++. ++ ..+.+ +..++++|+.... +-.++|||+.+.||+.
T Consensus 12 ~~y~F~~N~s~-~~---~~v~l--~~~~~dll~g~~~--------------------------~~~~~L~p~~v~Vl~~ 58 (58)
T PF08533_consen 12 GRYLFLLNFSD-EP---QTVTL--PESYTDLLTGETV--------------------------SGGLTLPPYGVRVLKE 58 (58)
T ss_dssp TTEEEEEE-SS-S----EE------TT-EEEES---------------------------------SEE-TTEEEEEE-
T ss_pred CEEEEEEECCC-CC---EEEEc--CCCceecccCcce--------------------------eeEEEECCCEEEEEEC
Confidence 67999999994 22 33433 5667888753110 1227899999999973
No 126
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=84.70 E-value=2.2 Score=39.11 Aligned_cols=56 Identities=18% Similarity=0.501 Sum_probs=39.8
Q ss_pred EEEEEeCC---CcCeEEEEee---cCCCCCc-ccccccC--CCCEEEEEeCCCCCCCCCCCCCCEEEEEee
Q 004765 100 ITYREWAP---GAKSASLIGD---FNNWNPN-ADIMTQN--EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 161 (732)
Q Consensus 100 v~f~~WAP---~A~~V~L~gd---fn~w~~~-~~~m~~~--~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~ 161 (732)
|+|++-+| ..+.|+|+|+ +.+|+.. +.+|.+. ....|++.+.-.. +. -..|||.+.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~-~~-----~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPR-GV-----DFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECC-CC-----eEEEEEEEE
Confidence 78998886 4568999998 8999864 4689876 6789988775211 11 247888774
No 127
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=84.01 E-value=7.6 Score=41.77 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004765 284 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEE 363 (732)
Q Consensus 284 ~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e 363 (732)
..++++.||++|++|++=|- +... . .|+. ..|+ --.++++.|+.+++++..++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~------~~~~---~~~~--------------~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-G------NFDS---ELAH--------------AVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-C------CCCH---HHHH--------------HHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999996543 1110 0 0000 0000 1135688899999999999999
Q ss_pred cCCCeEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhcc
Q 004765 364 YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 418 (732)
Q Consensus 364 ~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~-~~~~l~~~~~~v~~~ 418 (732)
+|+||+-+|--. + ...+.+ -..|++++++.+++.
T Consensus 102 ~~~DGidiDwE~-~--------------------~~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFEN-V--------------------PPEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEeccc-C--------------------CHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998521 1 011223 247899999999864
No 128
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=83.89 E-value=1.2 Score=48.69 Aligned_cols=181 Identities=13% Similarity=0.171 Sum_probs=96.2
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCC------CC----CCCCHHHHHHHHHHHHHcCCEEE
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP------SS----RCGTPDDLKSLIDKAHELGLLVL 299 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~------d~----~~Gt~~d~k~LV~~aH~~GI~Vi 299 (732)
+...|. +.|+.+..+++|.++|=--- ..+|.+....|=.+ .+ .+=|.+|+++||+.|+++||.||
T Consensus 16 ~~~~ik-~~id~ma~~k~N~lhlhl~D----~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 16 SVDTIK-RLIDQMAYYKLNVLHLHLSD----DQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp -HHHHH-HHHHHHHHTT-SEEEEEEES----STCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHH-HHHHHHHHcCCcEEEEEEec----CCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCcee
Confidence 455666 78999999999999873211 01122222111110 11 14478999999999999999999
Q ss_pred EEe-cccccCCCccc--cccCC-CCCCCCccccCCCCCcccCCC--CCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 004765 300 MDI-VHSHASNNVLD--GLNMF-DGTDGHYFHSGSRGYHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 373 (732)
Q Consensus 300 lDv-V~nH~s~~~~~--~~~~~-dg~~~~yf~~~~~g~~~~w~~--~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~ 373 (732)
-.| ++.|+..-... .+... ...+..+.. ...+.. ..||..+|++.+++.+.+.-.++-|.-.-|.+
T Consensus 91 Peid~PGH~~~~l~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHi-- 162 (351)
T PF00728_consen 91 PEIDTPGHAEAWLKAYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIHI-- 162 (351)
T ss_dssp EEEEESSS-HHHHHHHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEE--
T ss_pred eeccCchHHHHHHHhCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEe--
Confidence 888 58888642100 00000 000100100 111111 36999999999999999999999766222222
Q ss_pred cccccccccCccccccCCcccc---------cCcccChhH--HHHHHHHHHhhhccCCCEEEEEecCCCCC
Q 004765 374 VTSMMYTHHGLQVAFTGNYSEY---------FGFATDVDA--VVYLMLVNDMIHGLYPEAVSIGEDVSGMP 433 (732)
Q Consensus 374 ~~~m~~~~~g~~~~~~~~~~~~---------~g~~~~~~~--~~~l~~~~~~v~~~~p~~~~iaE~~~~~p 433 (732)
|-..-+.+.|... .|. .+... ..|++.+.+.+++.....++-.|.....+
T Consensus 163 ---------GgDEv~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~ 223 (351)
T PF00728_consen 163 ---------GGDEVNYNCWNNSPECQAWMKQNGL-TDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFP 223 (351)
T ss_dssp ---------E-TSTTTHHHHCHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTC
T ss_pred ---------CCcccccccccCCHHHhhHHhhcCC-chHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCC
Confidence 1111111111100 000 01111 24678888889888777777776665544
No 129
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=83.77 E-value=9.6 Score=40.08 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=82.2
Q ss_pred hHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHH---HHHHHHHHcCCEEEEEecccccCC
Q 004765 233 NFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK---SLIDKAHELGLLVLMDIVHSHASN 309 (732)
Q Consensus 233 ~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k---~LV~~aH~~GI~VilDvV~nH~s~ 309 (732)
+...+.+.-||+.|||.|-|- |+-.|++.+ | ++--|+..|++ ++.+.|...||+|++|+-++-.-.
T Consensus 63 g~~qD~~~iLK~~GvNyvRlR-vwndP~dsn-g---------n~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwa 131 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLR-VWNDPYDSN-G---------NGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWA 131 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEE-EecCCccCC-C---------CccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhcc
Confidence 334467889999999998763 444454322 1 12223444444 556778889999999986542211
Q ss_pred CccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCcccccc
Q 004765 310 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 389 (732)
Q Consensus 310 ~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~ 389 (732)
+ | ........|....|+.-+..|-+|-..++....+| ||+ .|.|. +..+ ..-+|.
T Consensus 132 D------------P-----akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e-Gi~---pdmVQ-VGNE---tn~gfl 186 (403)
T COG3867 132 D------------P-----AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE-GIL---PDMVQ-VGNE---TNGGFL 186 (403)
T ss_pred C------------h-----hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc-CCC---ccceE-eccc---cCCcee
Confidence 1 0 01111123544444445566677777777777774 554 55543 1111 111222
Q ss_pred CCcccccCcccChhH-HHHHHHHHHhhhccCCCEEEE
Q 004765 390 GNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAVSI 425 (732)
Q Consensus 390 ~~~~~~~g~~~~~~~-~~~l~~~~~~v~~~~p~~~~i 425 (732)
.-+++. .+-+- ...+.+...+|++..|++.++
T Consensus 187 wp~Ge~----~~f~k~a~L~n~g~~avrev~p~ikv~ 219 (403)
T COG3867 187 WPDGEG----RNFDKMAALLNAGIRAVREVSPTIKVA 219 (403)
T ss_pred ccCCCC----cChHHHHHHHHHHhhhhhhcCCCceEE
Confidence 112221 13232 246677777888888875543
No 130
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=83.68 E-value=1.3 Score=47.11 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=36.7
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
+-|+...+.|++-|... +....... . +-..-|++|++.||+.||+||+|+-+.
T Consensus 20 ~Yi~~~~~~Gf~~IFts-l~~~~~~~-~--------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 20 AYIDRMHKYGFKRIFTS-LLIPEEDA-E--------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHcCccceeee-cccCCchH-H--------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 56777789999998632 22111000 0 224569999999999999999998764
No 131
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=83.47 E-value=4.6 Score=43.55 Aligned_cols=61 Identities=26% Similarity=0.432 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 359 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~ 359 (732)
+.+.+++-|+.||++|++|||-+ + |.... ....++.-++.+++++..
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----G-----------G~~~~-----------------~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----G-----------GANGH-----------------VDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----e-----------CCCCc-----------------cccCCHHHHHHHHHHHHH
Confidence 56889999999999999999864 1 00000 013456778889999999
Q ss_pred HHHHcCCCeEEEcc
Q 004765 360 WLEEYKFDGFRFDG 373 (732)
Q Consensus 360 Wl~e~gvDGfR~D~ 373 (732)
+++++|+||+-||-
T Consensus 105 ~~~~~g~DGiDiD~ 118 (312)
T cd02871 105 IIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHhCCCeEEEec
Confidence 99999999999995
No 132
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=82.23 E-value=2 Score=45.14 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=60.7
Q ss_pred CcHHhHHHhhccccccCCc--cEEEECCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 229 NTYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv--~~I~L~Pi~e~~~~~~~GY~~~~~~a~d-~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
.+-.++. +.+..+++.|+ ++|+|-.=+... ++.++ +..+ .+|-+ .++||+.+|++|++|++-+.+.
T Consensus 21 ~~~~~v~-~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~------~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 21 GDQDKVL-EVIDGMRENDIPLDGFVLDDDYTDG-YGDFT------FDWDAGKFPN---PKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred CCHHHHH-HHHHHHHHcCCCccEEEECcccccC-Cceee------eecChhhCCC---HHHHHHHHHHCCCEEEEEeChh
Confidence 4556666 67777777555 577775433221 11121 2444 36655 5789999999999999976432
Q ss_pred ccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 306 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 306 H~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
+ ++...+.++..+.+.|||||-+|...
T Consensus 90 -v------------------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 90 -I------------------------------------------REWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred -H------------------------------------------HHHHHHHHHHhhccCCCCEEeccCCC
Confidence 1 56666666666566999999999764
No 133
>PRK14705 glycogen branching enzyme; Provisional
Probab=81.45 E-value=3 Score=52.59 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=55.0
Q ss_pred hhcccccCCcEEcCCcE-EEEEeCCCcCeEEEEeecCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004765 84 FSRGYEKFGFIRSDTGI-TYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 162 (732)
Q Consensus 84 f~~~y~~~G~~~~~~gv-~f~~WAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~ 162 (732)
+++-+.-||.|..++|+ ++|+|-|.|++|.|+.. ....+|++...|+|+..+|....+. . ..|++++..
T Consensus 516 ~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~--~---~~y~~~~~~ 585 (1224)
T PRK14705 516 YHAPHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMTHEAHGVWAAVLEPLQAGH--V---PDYRLEVTY 585 (1224)
T ss_pred cCCChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeeeeCCCCEEEEeccccccCC--C---CCeEEEEEe
Confidence 56667789999888884 79999999999999842 2234788777899999998421111 1 138888775
Q ss_pred CCCc-ccccCccc
Q 004765 163 PSGI-KDSIPAWI 174 (732)
Q Consensus 163 ~~~~-~~~~~~~~ 174 (732)
.++. ....+||.
T Consensus 586 ~~~~~~~~~d~y~ 598 (1224)
T PRK14705 586 DGAEPVTIDDPYH 598 (1224)
T ss_pred CCccceEeccccc
Confidence 4332 23345554
No 134
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=79.84 E-value=13 Score=39.14 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=56.5
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGY-HVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY-~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
++.... .-+|+-+++|+..|.+--=++ + |+. ...|+..+.+. .++++||+-|+++|++|+|=+..+ ++
T Consensus 30 ~t~~~k-~yIDfAa~~G~eYvlvD~GW~----~-~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~~~-~~ 98 (273)
T PF10566_consen 30 TTETQK-RYIDFAAEMGIEYVLVDAGWY----G-WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYHSE-TG 98 (273)
T ss_dssp SHHHHH-HHHHHHHHTT-SEEEEBTTCC----G-S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEECC-HT
T ss_pred CHHHHH-HHHHHHHHcCCCEEEeccccc----c-ccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEeCC-cc
Confidence 666666 788999999999998722211 1 111 34555555554 789999999999999999753321 11
Q ss_pred CCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 309 NNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 309 ~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
.+. .| +.+.+ +.+.-++++.||.|+.+|-+.
T Consensus 99 ~~~------------------------------~~-----~~~~~-~~~f~~~~~~Gv~GvKidF~~ 129 (273)
T PF10566_consen 99 GNV------------------------------AN-----LEKQL-DEAFKLYAKWGVKGVKIDFMD 129 (273)
T ss_dssp TBH------------------------------HH-----HHCCH-HHHHHHHHHCTEEEEEEE--S
T ss_pred hhh------------------------------Hh-----HHHHH-HHHHHHHHHcCCCEEeeCcCC
Confidence 110 11 22334 444555666999999999764
No 135
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=77.63 E-value=7.2 Score=34.35 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=38.9
Q ss_pred EEEEEeCCC---cCeEEEEe---ecCCCCCccccccc---CCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004765 100 ITYREWAPG---AKSASLIG---DFNNWNPNADIMTQ---NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 165 (732)
Q Consensus 100 v~f~~WAP~---A~~V~L~g---dfn~w~~~~~~m~~---~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~ 165 (732)
|+|++-+|. .+.|+|+| ++.+|+....+|.. ..++.|++.+.-. .|. -..|||.+...++
T Consensus 5 v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp-~~~-----~veyKyv~~~~~~ 73 (99)
T cd05809 5 QTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLP-AGR-----NIEFKAIKKSKDG 73 (99)
T ss_pred EEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEec-CCC-----cEEEEEEEEcCCC
Confidence 678775543 47899999 68899876544433 3458998877532 222 2478888765444
No 136
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=76.05 E-value=6.2 Score=47.24 Aligned_cols=90 Identities=14% Similarity=0.242 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccc--ccCCCccccccC-----CCCCCCCccccCCCCCcccCCCCCCCCCCHHH--HHH
Q 004765 282 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLNM-----FDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--LRF 352 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI~VilDvV~n--H~s~~~~~~~~~-----~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev--~~~ 352 (732)
.+++++-+.|+++||++|-|+.+. +-|.+....... --|.+|.+|... |. .||.+.+|+..-+- -+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~--GQ--nWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN--GQ--NWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc--cC--cCCCCCcCHHHHHhcCcHH
Confidence 678889999999999999999864 333333111112 247777777543 33 47778777642111 112
Q ss_pred HHHHHHHHHHHcCCCeEEEcccccc
Q 004765 353 LLSNARWWLEEYKFDGFRFDGVTSM 377 (732)
Q Consensus 353 l~~~l~~Wl~e~gvDGfR~D~~~~m 377 (732)
..+.+++-++ .+|.+|+|-+-.+
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~Gf 372 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILGF 372 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhhh
Confidence 3444444444 5799999987553
No 137
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=75.12 E-value=18 Score=37.84 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=91.4
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcc-ccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL-DGL 315 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~-~~~ 315 (732)
..+.-|.+-+++.+-+=|-. ..+..+=.+++++|.+. +.|.++|.=+-+.-+.+-.. +..
T Consensus 34 ~~~~~i~~~~f~llVVDps~---------------~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~Ywd~ 94 (300)
T COG2342 34 AYINEILNSPFDLLVVDPSY---------------CGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRFYWDK 94 (300)
T ss_pred chHHHHhcCCCcEEEEeccc---------------cCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhhHhhh
Confidence 56667777778777655522 12223335688888764 45667775555443322110 000
Q ss_pred cCCCCCCCCccccCCCCCcccCCC-CCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCccc
Q 004765 316 NMFDGTDGHYFHSGSRGYHWMWDS-RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE 394 (732)
Q Consensus 316 ~~~dg~~~~yf~~~~~g~~~~w~~-~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~ 394 (732)
....+. +.|-- ...+.|.+ ....|-.|+-+..+.+-+....+ .|+||.-+|.|....|-. ....
T Consensus 95 ~w~~~~-p~wLg----~edP~W~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y~Y~~---------~~~~ 159 (300)
T COG2342 95 YWLTGR-PDWLG----EEDPEWPGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAYWYVE---------WNDR 159 (300)
T ss_pred hhhcCC-ccccc----CCCCCCCCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechHHHHH---------Hhcc
Confidence 000111 11111 11233433 45677889999999999998888 799999999997653220 0011
Q ss_pred ccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 004765 395 YFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 426 (732)
Q Consensus 395 ~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~ia 426 (732)
..+.+.......|+.++.+.++..+|.+.+|-
T Consensus 160 ~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~ 191 (300)
T COG2342 160 ETGVNAAKKMVKFIAAIAEYARAANPLFRVIP 191 (300)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 12223334556899999999999999966664
No 138
>PLN02316 synthase/transferase
Probab=75.06 E-value=26 Score=43.80 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=30.2
Q ss_pred CCceEEEEecCCCCCCCCCCcHHhHHHhhccccccCCccEEEECCcccC
Q 004765 210 KSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH 258 (732)
Q Consensus 210 ~~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~ 258 (732)
.++.|--+..-. .+-.+.|.+.....+.-..|+++|.+.--+||-+..
T Consensus 586 ~pM~Il~VSsE~-~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~ 633 (1036)
T PLN02316 586 PPMHIVHIAVEM-APIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDC 633 (1036)
T ss_pred CCcEEEEEEccc-CCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence 346663322221 233356777776655566789999999889997653
No 139
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=72.28 E-value=4.6 Score=48.33 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCCCcHHhHHHhhccccccCCccEEEECCcccCCCC----CCCCCccccccCCCCCCCCHHHHH
Q 004765 226 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY----ASFGYHVTNFFAPSSRCGTPDDLK 285 (732)
Q Consensus 226 ~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~----~~~GY~~~~~~a~d~~~Gt~~d~k 285 (732)
-++|+|..+. +.++.+++.|.+.|+|+||...... .|--|.+.+=|+.+|-|=+++.|-
T Consensus 77 ~GIGDfgdL~-~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDLE-ALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 5789999976 8999999999999999999875422 234699999999999988877764
No 140
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=72.07 E-value=12 Score=33.54 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=41.2
Q ss_pred ccCCcEEcCCcEEEEEeCCC--cCeEEEEeecCC--CCCcccccccCC----CCEEEEEeCCCCCCCCCCCCCCEEEEEe
Q 004765 89 EKFGFIRSDTGITYREWAPG--AKSASLIGDFNN--WNPNADIMTQNE----FGVWEIFLPNNADGSPPIPHGSRVKIHM 160 (732)
Q Consensus 89 ~~~G~~~~~~gv~f~~WAP~--A~~V~L~gdfn~--w~~~~~~m~~~~----~GvW~i~ip~~~~g~~~i~hg~~Yk~~~ 160 (732)
.++|+ +.+++|++++. +++|.|+..-.. +.....+|.+.. ...|+++|+... | -..|.|.+
T Consensus 11 ~p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~------~~~Y~F~l 79 (116)
T cd02857 11 YPYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPT-G------RLRYYFEL 79 (116)
T ss_pred EEcCC----CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCC-c------EEEEEEEE
Confidence 37777 45899999874 678888753222 333456887532 347999998542 3 23677887
Q ss_pred eCC
Q 004765 161 DTP 163 (732)
Q Consensus 161 ~~~ 163 (732)
...
T Consensus 80 ~~~ 82 (116)
T cd02857 80 VDD 82 (116)
T ss_pred EcC
Confidence 653
No 141
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=71.99 E-value=2.6 Score=45.63 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=35.1
Q ss_pred HhhccccccCCccEEEECCcccC--CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEH--SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~--~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
+++|..+|++|+|+|..-=.+.. +..+ +-| |-...||.++++.|+++||.|||-.=+
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g-----~~d-------f~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEG-----QFD-------FTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTT-----B----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCC-----ccc-------ccchhhHHHHHHHHHHcCcEEEecccc
Confidence 37889999999999975322211 1101 112 223479999999999999999988543
No 142
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=71.62 E-value=11 Score=33.36 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=38.7
Q ss_pred EEEEEeCCC--cCeEEEEee---cCCCCCc-ccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004765 100 ITYREWAPG--AKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 162 (732)
Q Consensus 100 v~f~~WAP~--A~~V~L~gd---fn~w~~~-~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~ 162 (732)
++|++-+|. -+.|.|+|+ ..+|+.. +.+|...++..|++.+.-.. + ....|||.+..
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~-----~~veYKY~i~~ 64 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-S-----VYIEYKYFVSN 64 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-C-----CcEEEEEEEEe
Confidence 456665554 378999997 5689875 46888777889988775321 1 13578888753
No 143
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=71.61 E-value=7.3 Score=43.49 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=41.3
Q ss_pred CCCCCC-----CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHh
Q 004765 340 RLFNYG-----SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 414 (732)
Q Consensus 340 ~~ln~~-----~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 414 (732)
..|.|+ +|.++++|.+-.+.-.+ -++|||+|..++. ++..-+.+-++
T Consensus 364 VKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST--------------------------PlhVaeylLd~ 415 (423)
T PF14701_consen 364 VKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST--------------------------PLHVAEYLLDA 415 (423)
T ss_pred eeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC--------------------------cHHHHHHHHHH
Confidence 347775 79999999998888887 7999999999865 33345556666
Q ss_pred hhccCCC
Q 004765 415 IHGLYPE 421 (732)
Q Consensus 415 v~~~~p~ 421 (732)
.++.+|+
T Consensus 416 AR~v~Pn 422 (423)
T PF14701_consen 416 ARKVNPN 422 (423)
T ss_pred HHhhCCC
Confidence 6777776
No 144
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=70.90 E-value=58 Score=32.29 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 004765 280 TPDDLKSLIDKAHEL--GLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 357 (732)
Q Consensus 280 t~~d~k~LV~~aH~~--GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l 357 (732)
..+.....+.+++++ |++|++=+--.. +. ..+ --..++..|+.+++++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~~-------------~~--~~~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGWT-------------DS--SPF---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCCC-------------CC--CCc---------------hhhcCHHHHHHHHHHH
Confidence 345566777888887 999997652100 00 000 1235678888899999
Q ss_pred HHHHHHcCCCeEEEcc
Q 004765 358 RWWLEEYKFDGFRFDG 373 (732)
Q Consensus 358 ~~Wl~e~gvDGfR~D~ 373 (732)
..+++++++||+-+|-
T Consensus 97 ~~~v~~~~~DGidiD~ 112 (210)
T cd00598 97 VSFLKTYGFDGVDIDW 112 (210)
T ss_pred HHHHHHcCCCceEEee
Confidence 9999999999999995
No 145
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=70.79 E-value=6.8 Score=41.76 Aligned_cols=66 Identities=27% Similarity=0.452 Sum_probs=37.3
Q ss_pred hhccccccCCccEEEECCcccCCCC---CCCCCcc--------ccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYY---ASFGYHV--------TNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~---~~~GY~~--------~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
.-|+.+|+-|||+|+++-+.+.... ...|+.+ .||..+++.| -+-+.++|+.|.++||.+ ++|+-
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~--~lv~~ 109 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA--ALVPF 109 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE--EEESS
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE--EEEEE
Confidence 5689999999999999866554321 1122222 2444444433 578999999999999998 46665
Q ss_pred c
Q 004765 306 H 306 (732)
Q Consensus 306 H 306 (732)
|
T Consensus 110 w 110 (289)
T PF13204_consen 110 W 110 (289)
T ss_dssp -
T ss_pred E
Confidence 5
No 146
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=70.73 E-value=6.9 Score=42.96 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=38.7
Q ss_pred cHHhHHHhhccccccCCccEEEECC-cccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMA-VQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~P-i~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
++.... +.|...+++|++.|...= +.|. ..=-..+.|++|++.||++||.||+||-+.
T Consensus 12 ~~~~~~-~yi~~a~~~Gf~~iFTSL~ipe~-----------------~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENK-AYIEKAAKYGFKRIFTSLHIPED-----------------DPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHH-HHHHHHHCTTEEEEEEEE--------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHH-HHHHHHHHCCCCEEECCCCcCCC-----------------CHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 555555 678888999999997531 1110 000126899999999999999999998754
No 147
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=70.22 E-value=64 Score=34.51 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=56.1
Q ss_pred cccccCCccEEEECCcccC-CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCC
Q 004765 240 PRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF 318 (732)
Q Consensus 240 ~ylk~LGv~~I~L~Pi~e~-~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~ 318 (732)
.+.++.|+++|-|-=+... .....|+-. ....+...++.-|.+|+++|++||+= +
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~--------~~~~~~~~~~~~i~~lk~~G~kViiS----------------~ 74 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGS--------YPLDQGGWIKSDIAALRAAGGDVIVS----------------F 74 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCC--------CCcccchhHHHHHHHHHHcCCeEEEE----------------e
Confidence 3556789999976532221 122235411 01113567888899999999999973 1
Q ss_pred CCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 004765 319 DGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 373 (732)
Q Consensus 319 dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~ 373 (732)
-|....++.. ...-++.+.+++.-.++.|++||+-||-
T Consensus 75 GG~~g~~~~~-----------------~~~~~~~~~~a~~~~i~~y~~dgiDfDi 112 (294)
T cd06543 75 GGASGTPLAT-----------------SCTSADQLAAAYQKVIDAYGLTHLDFDI 112 (294)
T ss_pred cCCCCCcccc-----------------CcccHHHHHHHHHHHHHHhCCCeEEEec
Confidence 1211111110 2334566777777788899999999984
No 148
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=70.04 E-value=16 Score=31.54 Aligned_cols=60 Identities=18% Similarity=0.384 Sum_probs=39.1
Q ss_pred EEEEEeC--CCcCeEEEEeec---CCCCCc-ccccccCC-CCEEEEEeCCCC-CCCCCCCCCCEEEEEeeCCC
Q 004765 100 ITYREWA--PGAKSASLIGDF---NNWNPN-ADIMTQNE-FGVWEIFLPNNA-DGSPPIPHGSRVKIHMDTPS 164 (732)
Q Consensus 100 v~f~~WA--P~A~~V~L~gdf---n~w~~~-~~~m~~~~-~GvW~i~ip~~~-~g~~~i~hg~~Yk~~~~~~~ 164 (732)
+.|++-+ .-.+.+.|+|+. .+|++. +.+|...+ .+.|++.++-.. .+ .-..|||.+...+
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~-----~~~~yKy~~~~~~ 69 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEG-----QVIEYKYVIVDDD 69 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCC-----CeEEEEEEEECCC
Confidence 4455544 345789999975 478874 56888777 889998876322 11 1247888876544
No 149
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=69.73 E-value=10 Score=45.16 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=51.8
Q ss_pred cEEEEEeCCCcCeEEEEeec-CC-CCCc---ccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCCcccccCcc
Q 004765 99 GITYREWAPGAKSASLIGDF-NN-WNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAW 173 (732)
Q Consensus 99 gv~f~~WAP~A~~V~L~gdf-n~-w~~~---~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~~~~~~~~~ 173 (732)
|.++++|+|+|+.+.+.|-- ++ |++. ...|.|...|.|...|.+.......-..+..|.+.+.......+..+++
T Consensus 68 G~iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 147 (697)
T COG1523 68 GAIWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPY 147 (697)
T ss_pred ccEEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccC
Confidence 55899999999999999833 22 4443 3467788899999999977654322233444444443322223445556
Q ss_pred cceeccCC
Q 004765 174 IKFSVQAP 181 (732)
Q Consensus 174 ~~~~~~~~ 181 (732)
.+.++..+
T Consensus 148 ~Ksvv~~~ 155 (697)
T COG1523 148 PKSVVIDP 155 (697)
T ss_pred CceEEecc
Confidence 66655544
No 150
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=66.31 E-value=8.2 Score=46.20 Aligned_cols=64 Identities=6% Similarity=0.060 Sum_probs=52.4
Q ss_pred CCCCCcHHhHHHhhccccccCCccEEEECCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHH
Q 004765 225 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLID 289 (732)
Q Consensus 225 ~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~---~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~ 289 (732)
.-++|+|..+. +.++.+++.|.+.|+|+|+... ....+.-|.+++=|+.+|-|=+++.+-++..
T Consensus 158 ~~GIGDfgdl~-~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~~ 224 (695)
T PRK11052 158 NWGIGDFGDLK-QMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQQ 224 (695)
T ss_pred CCCeecHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhhh
Confidence 45789999977 8999999999999999999852 1124557999999999999999888877644
No 151
>PLN03059 beta-galactosidase; Provisional
Probab=66.06 E-value=5.4 Score=48.14 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=38.5
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 301 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilD 301 (732)
++|..+|++|+|+|..-= -|.++--. .=.-.|.+..||.++++.|++.||.|||=
T Consensus 63 d~L~k~Ka~GlNtV~tYV--------~Wn~HEp~--~G~~dF~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYV--------FWNGHEPS--PGNYYFEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHcCCCeEEEEe--------cccccCCC--CCeeeccchHHHHHHHHHHHHcCCEEEec
Confidence 688899999999997421 23221110 00112456899999999999999999985
No 152
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=65.86 E-value=9.5 Score=39.23 Aligned_cols=46 Identities=28% Similarity=0.472 Sum_probs=35.6
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 301 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilD 301 (732)
++-|.++|+||+++|+|+-=+- .+ +.++..++|+.++++|++|+-.
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~---------------~i-----~~~~~~rlI~~~~~~g~~v~~E 119 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSM---------------EI-----SLEERCNLIERAKDNGFMVLSE 119 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCcc---------------CC-----CHHHHHHHHHHHHhCCCeEecc
Confidence 3566699999999999864211 11 3688999999999999999954
No 153
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=64.71 E-value=6.3 Score=42.06 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=29.4
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
.-+++||+||+|+|-+-.|- |.- +-++++ +.+.+.||.||+|+---+.+
T Consensus 57 rDi~~l~~LgiNtIRVY~vd-------------------p~~-nHd~CM---~~~~~aGIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 57 RDIPLLKELGINTIRVYSVD-------------------PSK-NHDECM---SAFADAGIYVILDLNTPNGS 105 (314)
T ss_dssp HHHHHHHHHT-SEEEES----------------------TTS---HHHH---HHHHHTT-EEEEES-BTTBS
T ss_pred HhHHHHHHcCCCEEEEEEeC-------------------CCC-CHHHHH---HHHHhCCCEEEEecCCCCcc
Confidence 67899999999999865543 221 224444 44667899999998755333
No 154
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=64.52 E-value=28 Score=38.04 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecc
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
.+.||+|++++|++|-++++-+.|
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL~H 102 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQLWH 102 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHHHHHhcCccceeeccc
Confidence 789999999999999999999764
No 155
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=64.24 E-value=1.3e+02 Score=33.55 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccc
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHA 307 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~ 307 (732)
.+.||+|++++|++|-++++-+. |.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~--H~ 106 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLT--AG 106 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcc--Cc
Confidence 57899999999999999998875 54
No 156
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=64.14 E-value=22 Score=38.45 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 004765 345 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 373 (732)
Q Consensus 345 ~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~ 373 (732)
.+++.|+.+++++..|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46888999999999999999999999993
No 157
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.27 E-value=88 Score=34.05 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCC--CC-CcccCCCCCCCCCCHH---HHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS--RG-YHWMWDSRLFNYGSWE---VLRFLL 354 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~--~g-~~~~w~~~~ln~~~~e---v~~~l~ 354 (732)
.+.||+|++++|++|-++++-+- |.+...... +.+. .+-.+.. .. ....+..+ --....+ +.+.+.
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~--h~G~~~~~~---~~~~--~~~ps~~~~~~~~~~~~~~p-~~mt~~eI~~~i~~~~ 152 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLN--HPGRQSPAG---LNQN--PVAPSVALDPGGLGKLFGKP-RAMTEEEIEDVIDRFA 152 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcc--CCCcCCCcc---CCCC--CcCCCCCcCcccccccCCCC-CcCCHHHHHHHHHHHH
Confidence 68899999999999999998865 555442111 1100 0000000 00 00000000 0112222 333344
Q ss_pred HHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccC
Q 004765 355 SNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 419 (732)
Q Consensus 355 ~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~ 419 (732)
++++. +.+.|+||.-+-+++..+-.. +-.+.+..-...+|++ -.....|+.++.++|++.-
T Consensus 153 ~aA~r-a~~aGfDgVeih~a~gyLl~q--Flsp~~N~R~D~yGGs-lenR~rf~~EiI~aIR~av 213 (338)
T cd04733 153 HAARL-AQEAGFDGVQIHAAHGYLLSQ--FLSPLTNKRTDEYGGS-LENRARLLLEIYDAIRAAV 213 (338)
T ss_pred HHHHH-HHHcCCCEEEEchhhhhHHHH--hcCCcCCCCCccCCCC-HHHHHHHHHHHHHHHHHHc
Confidence 45554 456999999999886432221 1111111112233443 2234556777777776654
No 158
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=61.02 E-value=1.5e+02 Score=32.59 Aligned_cols=131 Identities=10% Similarity=0.028 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCC---cccCCC----------CCCCCCCH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGY---HWMWDS----------RLFNYGSW 347 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~---~~~w~~----------~~ln~~~~ 347 (732)
.+.||+|++++|++|-++++-+. |++........ ..+.. . +.+..... ...++. ..--....
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL~--H~Gr~~~~~~~-~~~~~-~-~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~ 152 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQLW--HTGRISHASLQ-PGGQA-P-VAPSAINAGTRTSLRDENGQAIRVETSTPRALELE 152 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEecc--CCCCCCCcccC-CCCCC-e-ECCCCcCcCcccccccccccccccCCCCCccCCHH
Confidence 68899999999999999999765 66554311100 00100 0 00000000 000000 00011222
Q ss_pred ---HHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCC
Q 004765 348 ---EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 420 (732)
Q Consensus 348 ---ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p 420 (732)
++.+-+..+++.=.+ .|+||.-+.+++..+-..+ -.+.+..-.+.+|++. .....|+.++.+.|++.-+
T Consensus 153 eI~~ii~~f~~AA~rA~~-AGfDGVEIh~ahGyLl~qF--LSp~~N~RtDeYGGsl-ENR~Rf~~Eiv~aVr~~vg 224 (362)
T PRK10605 153 EIPGIVNDFRQAIANARE-AGFDLVELHSAHGYLLHQF--LSPSSNQRTDQYGGSV-ENRARLVLEVVDAGIAEWG 224 (362)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEcccccchHHHh--cCCcCCCCCCcCCCcH-HHHHHHHHHHHHHHHHHcC
Confidence 233333344444444 8999999999876543311 1112222233344431 1235677788777777643
No 159
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=60.98 E-value=42 Score=35.07 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 004765 278 CGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 357 (732)
Q Consensus 278 ~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l 357 (732)
.+...++.+=|.+|++.|++|||=+ + |.. .+ . |. .. -++++-|+.+++++
T Consensus 55 ~~~~~~~~~~i~~~~~~g~KVllSi-----G-----G~~--~~---~-fs-------------~~-a~~~~~r~~f~~s~ 104 (256)
T cd06546 55 HPRFTTLWTELAILQSSGVKVMGML-----G-----GAA--PG---S-FS-------------RL-DDDDEDFERYYGQL 104 (256)
T ss_pred cchhhHHHHHHHHHHhCCCEEEEEE-----C-----CCC--CC---C-cc-------------cc-cCCHHHHHHHHHHH
Confidence 3444566666778899999999843 1 100 00 0 10 01 13456566667788
Q ss_pred HHHHHHcCCCeEEEcc
Q 004765 358 RWWLEEYKFDGFRFDG 373 (732)
Q Consensus 358 ~~Wl~e~gvDGfR~D~ 373 (732)
.-+++++++||+-+|-
T Consensus 105 ~~~~~~~~~DGiDiDw 120 (256)
T cd06546 105 RDMIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHHHhCCCceEEee
Confidence 8888889999999984
No 160
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=60.95 E-value=1.4e+02 Score=32.37 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 310 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~ 310 (732)
.+.||+|++++|+.|-++++-+. |.+..
T Consensus 76 ~~~~~~l~~~vh~~G~~~~~QL~--H~G~~ 103 (336)
T cd02932 76 IEALKRIVDFIHSQGAKIGIQLA--HAGRK 103 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcc--CCCcC
Confidence 68899999999999999998876 45443
No 161
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=60.70 E-value=23 Score=30.77 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=38.1
Q ss_pred EEEEEeCCCc---CeEEEEee---cCCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeC
Q 004765 100 ITYREWAPGA---KSASLIGD---FNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 162 (732)
Q Consensus 100 v~f~~WAP~A---~~V~L~gd---fn~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~ 162 (732)
++|++-+|+- +.++|+|+ +.+|+. +.+|...+.+.|++.+.-. .+. ...|||.+..
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~lp-~~~-----~ieYky~~~~ 64 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVSLP-VDT-----HVEWKFVLVE 64 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEEec-CCC-----cEEEEEEEEc
Confidence 6788877742 56779985 458986 7899877788997776421 121 2578887643
No 162
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=60.68 E-value=15 Score=39.54 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004765 286 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 365 (732)
Q Consensus 286 ~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~g 365 (732)
..|++||++|++|+==+.+.+-.... +-.....+. ..+ .-.+.+.|++. ++.||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~-~~~~ll~~~--------~~g-------------~~~~A~kLi~i----a~~yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAE-WCEELLEKD--------EDG-------------SFPYADKLIEI----AKYYG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HH-HHHHHT-----------TTS---------------HHHHHHHHH----HHHHT
T ss_pred hhHHHHHhcCceEEEEEEecCCchHH-HHHHHHcCC--------ccc-------------ccHHHHHHHHH----HHHcC
Confidence 57899999999998665552211100 000001111 111 11223444444 45599
Q ss_pred CCeEEEcccccccccccCccccccCCcccccCcccC-hhHHHHHHHHHHhhhccCCCEEEE
Q 004765 366 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVNDMIHGLYPEAVSI 425 (732)
Q Consensus 366 vDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~v~~~~p~~~~i 425 (732)
+||+=+--=..+ ..... ..-..|++++++.+++ .|+..++
T Consensus 100 FDGw~iN~E~~~-------------------~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 100 FDGWLINIETPL-------------------SGPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp --EEEEEEEESS-------------------TTGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred CCceEEEecccC-------------------CchhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 999876532211 01012 2345899999999999 8887555
No 163
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=60.42 E-value=10 Score=42.60 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=39.6
Q ss_pred HHhhccccccCCccEEEECCcccCCCCCCCCCccccccC-CCCCCC---CHHHHHHHHHHHHHcCCEEEEEec
Q 004765 235 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA-PSSRCG---TPDDLKSLIDKAHELGLLVLMDIV 303 (732)
Q Consensus 235 ~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a-~d~~~G---t~~d~k~LV~~aH~~GI~VilDvV 303 (732)
+++-+.++|+.|+|+|.|. +||....... .+|.+= ...=+.+.|+.|.++||+|+||+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiP----------i~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIP----------IGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEcc----------cchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 3478899999999999852 2332211010 344443 233567779999999999999974
No 164
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=59.09 E-value=21 Score=30.77 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=23.2
Q ss_pred CcCeEEEEeecCCCCCc-ccccccCC----CCEEEEEeC
Q 004765 108 GAKSASLIGDFNNWNPN-ADIMTQNE----FGVWEIFLP 141 (732)
Q Consensus 108 ~A~~V~L~gdfn~w~~~-~~~m~~~~----~GvW~i~ip 141 (732)
+|.+|+|.+-||+|... ...|.+.. .|.|+++|.
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~ 55 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVD 55 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEE
Confidence 58899999999999765 46777654 799999994
No 165
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.71 E-value=1.1e+02 Score=33.81 Aligned_cols=132 Identities=13% Similarity=0.079 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHH---HHHHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV---LRFLLSNA 357 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev---~~~l~~~l 357 (732)
.+.||+|++++|++|=++++-+. |.+...........+.. . ..+... ....+..+ --....|+ .+.+..++
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL~--H~Gr~~~~~~~~~~~~~-~-~~ps~~-~~~~~~~p-~~mt~~eI~~ii~~f~~AA 150 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQLW--HVGAMRKLGTPPFPDVP-P-LSPSGL-VGPGKPVG-REMTEADIDDVIAAFARAA 150 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCCcCcccCccCCCc-e-eCCCCC-CcCCCCCC-ccCCHHHHHHHHHHHHHHH
Confidence 68899999999999999999875 44543211000011110 0 000000 00000000 01122233 33333444
Q ss_pred HHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccC-CCE
Q 004765 358 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY-PEA 422 (732)
Q Consensus 358 ~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~-p~~ 422 (732)
+.-.+ .|+||.-+-+++..+-..+-.+ ..+-.-++| |+.. .....|+.++.+.|++.. |++
T Consensus 151 ~~a~~-aGfDgVeih~ahGyLl~qFLSp-~~N~RtDeY-GGsl-enR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 151 ADARR-LGFDGIELHGAHGYLIDQFFWA-GTNRRADGY-GGSL-AARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred HHHHH-cCCCEEEEecccchHHHHhcCC-CCCCCCCCC-CCCH-HHHHHHHHHHHHHHHHHcCCCC
Confidence 44444 8999999999875433211111 111111233 4321 123457777777777754 453
No 166
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=56.65 E-value=1.4e+02 Score=32.51 Aligned_cols=123 Identities=12% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHH---HHHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVL---RFLLSNA 357 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~---~~l~~~l 357 (732)
.+.|++|++++|++|-++++-+. |.+.... ..+. . ..+.... ........-.....|+. +-+..++
T Consensus 80 i~~~r~l~d~vh~~G~~i~~QL~--H~G~~~~-----~~~~--~-~~ps~~~-~~~~~~~p~~mt~eeI~~ii~~f~~aA 148 (337)
T PRK13523 80 IEGLHKLVTFIHDHGAKAAIQLA--HAGRKAE-----LEGD--I-VAPSAIP-FDEKSKTPVEMTKEQIKETVLAFKQAA 148 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcc--CCCCCCC-----CCCC--c-cCCCCCC-CCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 68899999999999999998875 4444321 1110 0 0000000 00000000012223333 3333444
Q ss_pred HHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhcc
Q 004765 358 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 418 (732)
Q Consensus 358 ~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~ 418 (732)
+.-.+ .|+||.-+-+++..+-.. +-.+.+..-...+|+. -.....|+.++.+.|++.
T Consensus 149 ~~a~~-aGfDgVeih~ahGyLl~q--FlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~ 205 (337)
T PRK13523 149 VRAKE-AGFDVIEIHGAHGYLINE--FLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEV 205 (337)
T ss_pred HHHHH-cCCCEEEEccccchHHHH--hcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHh
Confidence 44444 899999999986443221 1111122223334543 223456777777777765
No 167
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=56.39 E-value=1.3e+02 Score=33.38 Aligned_cols=128 Identities=10% Similarity=0.051 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcc--cCCCCCCCCCCHH---HHHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHW--MWDSRLFNYGSWE---VLRFLLS 355 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~--~w~~~~ln~~~~e---v~~~l~~ 355 (732)
.+.+|+|++++|++|-++++-+. |.+..... ...+.. . ..+..-.... .+...--.....+ +.+-+.+
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~~~---~~~~~~-~-~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 154 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAHAPN---RESRET-P-LGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVD 154 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCCCCc---cCCCCC-c-cCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 68999999999999999999876 66553211 000100 0 0000000000 0000001122233 3334444
Q ss_pred HHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccC
Q 004765 356 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 419 (732)
Q Consensus 356 ~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~ 419 (732)
+++. +.+.|+||.-+-+++..+-..+-. +.+..-...+|+.. .....|+.++.+.|++..
T Consensus 155 AA~r-a~~aGfDgVEih~ahGyLl~QFlS--p~~N~RtD~yGGsl-enR~Rf~~eii~aIr~~v 214 (370)
T cd02929 155 AALR-ARDAGFDIVYVYAAHGYLPLQFLL--PRYNKRTDEYGGSL-ENRARFWRETLEDTKDAV 214 (370)
T ss_pred HHHH-HHHcCCCEEEEcccccchHHHhhC--ccccCCccccCCCh-HhhhHHHHHHHHHHHHHc
Confidence 4544 445899999999886433221110 11111122234421 223457777777777754
No 168
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=56.18 E-value=28 Score=38.21 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhccCCCEE
Q 004765 345 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAV 423 (732)
Q Consensus 345 ~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~v~~~~p~~~ 423 (732)
.++..|+.+++++..|++++++||+-+|--. . +.. .+...+.+. ..|++++++.+++..++.+
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~-p------------~~~---~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEY-P------------GQR---GGPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeec-c------------ccC---CCCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 5678899999999999999999999999321 0 000 011122333 4789999999987644443
No 169
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.66 E-value=58 Score=35.11 Aligned_cols=127 Identities=14% Similarity=0.183 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCH---HHHHHHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW---EVLRFLLSNA 357 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~---ev~~~l~~~l 357 (732)
.+.+|+|++++|+.|-++++-+ +|.+....... .+.. .+ .............+ --.... ++.+.+.+.+
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~---~~~~-~~-~~s~~~~~~~~~~~-~~mt~~ei~~~i~~~~~aA 147 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNL---TGGP-PP-APSAIPSPGGGEPP-REMTKEEIEQIIEDFAAAA 147 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcC---CCCC-cc-CCCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHH
Confidence 6899999999999999998776 55554421111 1100 00 00000000000000 011222 3444555566
Q ss_pred HHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccC
Q 004765 358 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 419 (732)
Q Consensus 358 ~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~ 419 (732)
+...+ .|+||+-+.++...+-..+-. +.+..-...+|+.. .....|+.++.+.|++..
T Consensus 148 ~~a~~-aGfDgveih~~~gyL~~qFls--p~~n~R~d~yGgs~-enr~r~~~eii~avr~~~ 205 (327)
T cd02803 148 RRAKE-AGFDGVEIHGAHGYLLSQFLS--PYTNKRTDEYGGSL-ENRARFLLEIVAAVREAV 205 (327)
T ss_pred HHHHH-cCCCEEEEcchhhhHHHHhcC--ccccCCCcccCCCH-HHHHHHHHHHHHHHHHHc
Confidence 66666 899999999875432211100 11111122234332 233456666666666643
No 170
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=55.65 E-value=33 Score=36.75 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhc
Q 004765 345 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHG 417 (732)
Q Consensus 345 ~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~v~~ 417 (732)
.+++.|+.+++++.-+++++|+||+-+|=- |. +...+.+. ..+++++++++++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE-----------------~P---~~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWE-----------------FP---SSQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeeccc-----------------CC---CChhHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999931 10 11123233 3689999999874
No 171
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=55.33 E-value=29 Score=37.45 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhccC
Q 004765 345 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLY 419 (732)
Q Consensus 345 ~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~v~~~~ 419 (732)
++++.|+.+++++..+++++|+||+-+|.=.... ..+...+.+. ..|++++++.+++..
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~----------------~~~~~~d~~~~~~~l~el~~~l~~~~ 147 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLA----------------AYGVPDKRKELIQLVIHLGETLHSAN 147 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhc----------------ccCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 5688999999999999999999999998311110 0000112222 478999999998753
No 172
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=55.33 E-value=34 Score=37.00 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccCh-hHHHHHHHHHHhhhcc
Q 004765 345 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDMIHGL 418 (732)
Q Consensus 345 ~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~v~~~ 418 (732)
.+++.|+.+++++.-|++++++||+-+|--. .. . .+ .+. .-..|++++++.+++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~-~~------------~----~~--~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEY-PG------------A----RG--DDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcC-CC------------C----Cc--cHHHHHHHHHHHHHHHHHHh
Confidence 5688899999999999999999999999421 10 0 00 122 2347899999998764
No 173
>TIGR03356 BGL beta-galactosidase.
Probab=53.49 E-value=24 Score=39.86 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=62.2
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCC------CCCHHHHHHHHHHHHHcCCEEEEEe
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSR------CGTPDDLKSLIDKAHELGLLVLMDI 302 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~------~Gt~~d~k~LV~~aH~~GI~VilDv 302 (732)
..|.-.. +-+..||+||+|++-+.=-+ -.+.|. -...+-++++|++|.++||.+|+++
T Consensus 51 d~y~~y~-eDi~l~~~~G~~~~R~si~W---------------sri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 51 DHYHRYE-EDVALMKELGVDAYRFSIAW---------------PRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred cHHHhHH-HHHHHHHHcCCCeEEcccch---------------hhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 4455554 89999999999998753211 111121 1235778999999999999999998
Q ss_pred cccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004765 303 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 365 (732)
Q Consensus 303 V~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~g 365 (732)
.+ .. .|.++... . -+.++++.+.+.+.++.-+++||
T Consensus 115 ~H--fd-------------~P~~l~~~-g-----------Gw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 115 YH--WD-------------LPQALEDR-G-----------GWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cc--CC-------------ccHHHHhc-C-----------CCCChHHHHHHHHHHHHHHHHhC
Confidence 74 21 11222111 1 24567888888888888888776
No 174
>PTZ00445 p36-lilke protein; Provisional
Probab=52.36 E-value=21 Score=36.06 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=41.6
Q ss_pred cHHhHHHhhccccccCCccEEEE----CCcccCCCCCCCCCccccccCCCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQI----MAVQEHSYYASFGYHVTNFFAPSSRCGT--PDDLKSLIDKAHELGLLVLM 300 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L----~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt--~~d~k~LV~~aH~~GI~Vil 300 (732)
+..+.++...+.|++.||.+|-+ +=|--|. -||+--+ +-+.++++ ..+|+.|+.++.+.||+|++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~Hs----gG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHS----GGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhc----ccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 44555556778899999999963 1111122 2443332 23344443 35599999999999999984
No 175
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=52.32 E-value=32 Score=29.92 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCcEEEEEeCc----EEEEEEcCCCCcccceEEccc----CC-ceEEEEEeCCCCCCCCccccCCCcceeecccccCCCC
Q 004765 635 GDRVIVFERGN----LVFVFNFHWNSSYSDYRVGCL----KP-GKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQP 705 (732)
Q Consensus 635 ~~~vlaf~R~~----llvv~Nf~~~~~~~~~~l~~~----~~-g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~ 705 (732)
+++.+||.|+. +|+|++.....+...|.+.++ .+ .++.+||+.... + -+..
T Consensus 5 d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~---------------t-----v~~~ 64 (91)
T PF09260_consen 5 DDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSY---------------T-----VDSN 64 (91)
T ss_dssp ETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEE---------------E-------TT
T ss_pred CCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEE---------------E-----ECCC
Confidence 45799999966 777776654323456666665 12 245555542110 0 1234
Q ss_pred eEEEEEecCcEEEEEEEe
Q 004765 706 HSFLVYAPSRTAVVYALA 723 (732)
Q Consensus 706 ~~~~l~lp~~s~~vl~~~ 723 (732)
+.+++.+-.+.-.||.+.
T Consensus 65 G~l~v~m~~G~P~Vl~P~ 82 (91)
T PF09260_consen 65 GTLTVPMSNGEPRVLYPA 82 (91)
T ss_dssp S-EEEEESTT--EEEEEC
T ss_pred CEEEEEEcCCceEEEEEH
Confidence 458888888888888775
No 176
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=51.93 E-value=22 Score=32.32 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=41.6
Q ss_pred cCCcEEEEEeCC--CcCeEEEE-eecCCC----CCccccccc----CCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004765 96 SDTGITYREWAP--GAKSASLI-GDFNNW----NPNADIMTQ----NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 164 (732)
Q Consensus 96 ~~~gv~f~~WAP--~A~~V~L~-gdfn~w----~~~~~~m~~----~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~ 164 (732)
.++.+++|+++. .+++|.|+ +|-..| .....+|++ ..+..|+++|+.... ..+|.|.+.. +
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-------r~~Y~F~l~~-~ 90 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-------RLRYYFELED-G 90 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-------EEEEEEEEEE-T
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-------eEEEEEEEEe-C
Confidence 455688888875 68899997 666554 334467875 346799999985422 2478888887 4
Q ss_pred Cc
Q 004765 165 GI 166 (732)
Q Consensus 165 ~~ 166 (732)
|.
T Consensus 91 ~~ 92 (120)
T PF02903_consen 91 GE 92 (120)
T ss_dssp TE
T ss_pred CE
Confidence 43
No 177
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=51.37 E-value=17 Score=37.58 Aligned_cols=47 Identities=32% Similarity=0.462 Sum_probs=34.3
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 302 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDv 302 (732)
++-|.++|+||+++|+++-=+- .+ +.++..++|+.+.++|++|+-.+
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGti---------------~l-----~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGTI---------------DL-----PEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SSS-----------------------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCce---------------eC-----CHHHHHHHHHHHHHCCCEEeecc
Confidence 4678899999999999753110 11 26889999999999999999664
No 178
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=50.76 E-value=2e+02 Score=31.55 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 310 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV~nH~s~~ 310 (732)
-.+.+|+|++++|+.|-++++-+. |.+..
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~QL~--h~G~~ 103 (353)
T cd02930 75 QAAGHRLITDAVHAEGGKIALQIL--HAGRY 103 (353)
T ss_pred HHHHHHHHHHHHHHcCCEEEeecc--CCCCC
Confidence 378999999999999999998876 55543
No 179
>PLN02411 12-oxophytodienoate reductase
Probab=50.54 E-value=2e+02 Score=32.07 Aligned_cols=131 Identities=13% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCC----------CccccCCCCCcccCCCCCCCCCCHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG----------HYFHSGSRGYHWMWDSRLFNYGSWEVL 350 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~----------~yf~~~~~g~~~~w~~~~ln~~~~ev~ 350 (732)
.+.+|+|++++|++|-++++-+. |.+........ ..+..+ .|......+.. .....---....|+.
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL~--H~Gr~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~pr~mt~~eI~ 161 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQLW--HVGRASHQVYQ-PGGAAPISSTNKPISERWRILMPDGSY-GKYPKPRALETSEIP 161 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCCCccccc-cCCCCccCCccccccCCcccccCCccc-cCCCCCccCCHHHHH
Confidence 57899999999999999999876 55543211000 001000 00000000000 000000112233333
Q ss_pred H---HHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccC
Q 004765 351 R---FLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 419 (732)
Q Consensus 351 ~---~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~ 419 (732)
+ .+.+.++.=.+ -|+||.-+-+++..+-..+ -...+..-.+.+|++. .....|+.++.++|++.-
T Consensus 162 ~ii~~f~~AA~rA~~-AGFDGVEIH~AhGYLl~QF--LSp~tN~RtDeYGGSl-ENR~RF~lEIi~aVr~~v 229 (391)
T PLN02411 162 EVVEHYRQAALNAIR-AGFDGIEIHGAHGYLIDQF--LKDGINDRTDEYGGSI-ENRCRFLMQVVQAVVSAI 229 (391)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEccccchHHHHh--CCCccCCCCCcCCCCH-HHHhHHHHHHHHHHHHHc
Confidence 3 33334444444 8999999999976543311 1112222233344431 223567777777777664
No 180
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=50.20 E-value=43 Score=36.07 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhccC----C
Q 004765 346 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLY----P 420 (732)
Q Consensus 346 ~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~v~~~~----p 420 (732)
+++-|+.+++++.-++++||+||+-+|-=..... +...+.+. ..|++++++.+++.. .
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~-----------------~~~~~~~~~~~~l~~L~~~l~~~~~~~~~ 158 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSS-----------------GDPQDKDNYTAFLKELRKALKRANRSGKG 158 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTST-----------------SSTTHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeecccc-----------------ccchhhhhhhhhhhhhhhhhcccccccce
Confidence 4677899999999999999999999985321100 00112223 378999998888852 3
Q ss_pred CEEEEE
Q 004765 421 EAVSIG 426 (732)
Q Consensus 421 ~~~~ia 426 (732)
-.+.++
T Consensus 159 ~~ls~a 164 (343)
T PF00704_consen 159 YILSVA 164 (343)
T ss_dssp SEEEEE
T ss_pred eEEeec
Confidence 455555
No 181
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=49.88 E-value=39 Score=36.14 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhcc
Q 004765 344 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGL 418 (732)
Q Consensus 344 ~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~v~~~ 418 (732)
.++++.|+.+++++..+++++|+||+-+|--. + ...+.+. ..|++++++.+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~--------------------~~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-L--------------------PADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-C--------------------ChhHHHHHHHHHHHHHHHhhhc
Confidence 36788999999999999999999999999521 1 0112222 47999999999875
No 182
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=49.36 E-value=16 Score=33.26 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.1
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 300 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vil 300 (732)
.+.++.+.++|+.+||+.|= ..-.++++.|+++||+|+-
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcc--------------------------hHHHHHHHHHHHcCCEEEe
Confidence 37889999999999999873 3456889999999999983
No 183
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.81 E-value=1.7e+02 Score=32.02 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCH---HHHHHHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW---EVLRFLLSNA 357 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~---ev~~~l~~~l 357 (732)
.+.+|+|++++|++|-++++-+. |.+....... ..+.. .+ ..............---.... ++.+.+..++
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL~--h~G~~~~~~~--~~~~~-~~-~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQIF--HAGRMANPAL--VPGGD-VV-SPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEec--CCCCCCCccc--cCCCc-ee-cCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999997754 5544321110 00100 00 000000000000000011222 3344444555
Q ss_pred HHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccC
Q 004765 358 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 419 (732)
Q Consensus 358 ~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~ 419 (732)
+.-. +.|+||.-+-+++..+-..+.. +.+..-...+|+. -.....|+.++.+.|++.-
T Consensus 151 ~~a~-~aGfDgVeih~ahGyLl~qFls--p~~N~R~D~yGGs-lenR~r~~~eii~~vr~~v 208 (353)
T cd04735 151 RRAI-EAGFDGVEIHGANGYLIQQFFS--PHSNRRTDEWGGS-LENRMRFPLAVVKAVQEVI 208 (353)
T ss_pred HHHH-HcCCCEEEEccccchHHHHhcC--CccCCCCcccCCc-HHHHHHHHHHHHHHHHHHh
Confidence 5544 4899999999886543322111 1111222234444 2234567777777777654
No 184
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=47.02 E-value=76 Score=28.06 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=39.5
Q ss_pred EEEEEeCC----CcCeEEEEee---cCCCCCcc---c-ccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004765 100 ITYREWAP----GAKSASLIGD---FNNWNPNA---D-IMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 165 (732)
Q Consensus 100 v~f~~WAP----~A~~V~L~gd---fn~w~~~~---~-~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~ 165 (732)
|+|++=+. --+.|+|+|+ +.+|+... . +|.......|++.++.. .|. -..|||.+...+|
T Consensus 5 v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp-~~~-----~veyK~v~~~~~g 75 (103)
T cd05820 5 VIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVP-AGT-----YIEFKFLKAPADG 75 (103)
T ss_pred EEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcC-CCC-----cEEEEEEEECCCC
Confidence 67777543 2368999995 56898643 2 67666678899888632 222 2578988765554
No 185
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=46.58 E-value=20 Score=41.78 Aligned_cols=59 Identities=22% Similarity=0.225 Sum_probs=41.3
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
+++|..+|++|+|+|+--=.+- -... ..-.-.|.+.-||.++|+.||+.|+-|||=+=+
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~Hep---------~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-LHEP---------SPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-cccC---------CCCcccccchhHHHHHHHHHHHCCeEEEecCCC
Confidence 4788899999999998432221 0000 000114677889999999999999999997653
No 186
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=45.68 E-value=66 Score=28.42 Aligned_cols=60 Identities=20% Similarity=0.490 Sum_probs=38.9
Q ss_pred EEEEEeCCC--cCeEEEEeec---CCCCCc-ccccccC----CCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004765 100 ITYREWAPG--AKSASLIGDF---NNWNPN-ADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 165 (732)
Q Consensus 100 v~f~~WAP~--A~~V~L~gdf---n~w~~~-~~~m~~~----~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~ 165 (732)
|+|++=++. -+.|.|+|+- .+|+.. +.+|... +++.|++.+.-.. +. .-.|||.+...++
T Consensus 9 V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~-~~-----~veYKy~~~~~~~ 78 (106)
T cd05811 9 VTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPA-GT-----SFEYKFIRKESDG 78 (106)
T ss_pred EEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 677765443 4679999974 579874 5678643 3578998886322 21 2578888765444
No 187
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=45.08 E-value=2.3e+02 Score=30.94 Aligned_cols=28 Identities=14% Similarity=0.431 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 310 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~ 310 (732)
.+.+++|++++|++|-++++-+- |.+..
T Consensus 76 i~~~~~l~~~vh~~g~~~~~Ql~--H~G~~ 103 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMIQLT--HLGRR 103 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEEecc--CCCcC
Confidence 57899999999999999998754 55443
No 188
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=44.99 E-value=19 Score=38.42 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEec
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIV 303 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV 303 (732)
++++++++.+.||++||.|.||-.
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 489999999999999999999943
No 189
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=44.33 E-value=1e+02 Score=34.90 Aligned_cols=75 Identities=16% Similarity=0.045 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-cccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDI-VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNAR 358 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDv-V~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~ 358 (732)
|++|.+++|+-|.-|||+||..+ ++.|++. ||...-+=.-++|-..... ... -.+|-.++..-++|.+.+.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s---Wg~g~~~fl~p~~~~~~~~---~~~--gplnP~~n~tydvls~i~~ 319 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS---WGPGYPDFLTPCWSSFEVQ---PPF--GPLNPTNNHTYDVLSEIFE 319 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc---ccCCCCcccCCcccccccC---CCC--cCCCCCchhHHHHHHHHHH
Confidence 68999999999999999999888 5899986 3322211011122111111 111 1267777776666666655
Q ss_pred HHHH
Q 004765 359 WWLE 362 (732)
Q Consensus 359 ~Wl~ 362 (732)
--.+
T Consensus 320 dv~e 323 (542)
T KOG2499|consen 320 DVSE 323 (542)
T ss_pred HHHH
Confidence 5554
No 190
>PRK15447 putative protease; Provisional
Probab=44.18 E-value=54 Score=35.19 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=37.7
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 300 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vil 300 (732)
|++..|. -.|++.|+++|+|--.. .+... .| +.+++++.|+.||++|.+|.+
T Consensus 15 ~~~~~~~----~~~~~~gaDaVY~g~~~-~~~R~--------------~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 15 ETVRDFY----QRAADSPVDIVYLGETV-CSKRR--------------EL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHHH----HHHHcCCCCEEEECCcc-CCCcc--------------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 5666555 46788999999987311 11100 12 689999999999999999987
No 191
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=44.15 E-value=2.2e+02 Score=31.42 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccC-CCCCCCC-ccccCCCCCcccCCCCCCCCCCHH---HHHHHHH
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNM-FDGTDGH-YFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLS 355 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~-~dg~~~~-yf~~~~~g~~~~w~~~~ln~~~~e---v~~~l~~ 355 (732)
.+.||++++++|+.|=++++-+. |.+......... .....+. ...... ....+ =-....| +.+.+..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~--H~Gr~~~~~~~~~~~~vapS~~~~~~~-----~~~~p-r~mt~~eI~~ii~~f~~ 153 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLW--HAGRKARASHPWLPSAVAPSAIPAPGG-----RRATP-RELTEEEIEEVIEDFAR 153 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEec--cCcccccccccCCCcccCCCccccccC-----CCCCC-ccCCHHHHHHHHHHHHH
Confidence 67899999999999999999875 555321000000 0000000 000000 00000 0012223 3333334
Q ss_pred HHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcc-cChhHHHHHHHHHHhhhccCC
Q 004765 356 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA-TDVDAVVYLMLVNDMIHGLYP 420 (732)
Q Consensus 356 ~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~v~~~~p 420 (732)
.++.=. +-|+||.-+-+++..+-..+ -.+.++.-.+.+|++ +| ...|+.++-++|++.-+
T Consensus 154 AA~rA~-~AGFDgVEIH~AhGYLi~qF--lsp~tN~RtD~YGGSlEN--R~Rf~~EVv~aVr~~vg 214 (363)
T COG1902 154 AARRAK-EAGFDGVEIHGAHGYLLSQF--LSPLTNKRTDEYGGSLEN--RARFLLEVVDAVREAVG 214 (363)
T ss_pred HHHHHH-HcCCCEEEEeeccchHHHHh--cCCccCCCCCccCCcHHH--HHHHHHHHHHHHHHHhC
Confidence 444444 48999999999986543321 112223333334444 32 34567777777766543
No 192
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=43.84 E-value=71 Score=34.94 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 004765 346 SWEVLRFLLSNARWWLEEYKFDGFRFDG 373 (732)
Q Consensus 346 ~~ev~~~l~~~l~~Wl~e~gvDGfR~D~ 373 (732)
+++.|+.+++++..+++++++||+-+|-
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDw 115 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDW 115 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeecc
Confidence 6888999999999999999999999985
No 193
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=43.59 E-value=59 Score=25.67 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCcccceEEcccCCce-EEEEEeCCCCCCCCccccCCCcceeecccccCCCCeEEEEEecCcEEEEEE
Q 004765 646 LVFVFNFHWNSSYSDYRVGCLKPGK-YKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 721 (732)
Q Consensus 646 llvv~Nf~~~~~~~~~~l~~~~~g~-~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~s~~vl~ 721 (732)
|+|++|.++ ..+...|+...+|+ |.+++ |... ... + -+..+..++.+||+|..||.
T Consensus 1 L~v~iN~~~--~~k~~~Vgt~~ag~~~~D~t--------Gn~~----~~v-t-----id~dG~~~f~v~~~s~SVWs 57 (57)
T PF09154_consen 1 LAVYINGSA--GWKRMWVGTNWAGKTFYDYT--------GNSS----ETV-T-----IDEDGWGEFPVPPGSVSVWS 57 (57)
T ss_dssp EEEEEE-SS--SEEEEEEEGGGTTEEEEETT--------SSSS----SEE-E-----E-TTSEEEEEE-TTEEEEEE
T ss_pred CEEEEeCCC--CeEEEEEccccCCCEEEEcc--------CCCC----CeE-E-----ECCCeEEEEEECCCEEEEeC
Confidence 466779884 45677788777764 54443 2211 011 1 13345688999999999984
No 194
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=42.68 E-value=4.4e+02 Score=27.94 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=34.6
Q ss_pred cccccCCccEEEECCcccCCCCCCCCCccccccCCC--CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 004765 240 PRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS--SRCGTPDDLKSLIDKAHELGLLVLMD 301 (732)
Q Consensus 240 ~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d--~~~Gt~~d~k~LV~~aH~~GI~VilD 301 (732)
.|..+-.|+.|-|.=+..++. -|+-..||-... +.++.-.+|.+-|+.|+++|++|||=
T Consensus 18 ~~C~~~~~dii~i~Fl~~~~~---~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 18 EYCDTGNYDIVNISFLNVFGS---GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred HHhCCCCccEEEEEeEcccCC---CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 344556677776654443332 223233322211 11113468999999999999999984
No 195
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=42.50 E-value=3.2e+02 Score=29.78 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 004765 281 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 310 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDvV~nH~s~~ 310 (732)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL~--H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQLW--HVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcc--cCccC
Confidence 57899999999999999998765 55544
No 196
>PLN03231 putative alpha-galactosidase; Provisional
Probab=42.10 E-value=5.1e+02 Score=28.55 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=75.3
Q ss_pred HHhHHHhhccccccCCccEEEECCcccCCC--------CCCCCC---ccccccCCCC-CCCC---HHHHHHHHHHHHHcC
Q 004765 231 YANFRDDVLPRIKRLGYNAVQIMAVQEHSY--------YASFGY---HVTNFFAPSS-RCGT---PDDLKSLIDKAHELG 295 (732)
Q Consensus 231 ~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~--------~~~~GY---~~~~~~a~d~-~~Gt---~~d~k~LV~~aH~~G 295 (732)
++..++-.-..||++|++.|-|==-+-.+. ..+.+| +......++| ||=+ -..||.|.|.+|++|
T Consensus 20 i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~G 99 (357)
T PLN03231 20 FLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALG 99 (357)
T ss_pred HHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCC
Confidence 344443334589999999997743332111 011233 1222233332 2221 237999999999999
Q ss_pred CEEEEEeccc-ccCCCccccc--cCCCCCCCCcccc-CC--CCCcccCCCC---CCCCCCHHHHHHHHHHHHHHHHHcCC
Q 004765 296 LLVLMDIVHS-HASNNVLDGL--NMFDGTDGHYFHS-GS--RGYHWMWDSR---LFNYGSWEVLRFLLSNARWWLEEYKF 366 (732)
Q Consensus 296 I~VilDvV~n-H~s~~~~~~~--~~~dg~~~~yf~~-~~--~g~~~~w~~~---~ln~~~~ev~~~l~~~l~~Wl~e~gv 366 (732)
+|.=|=.-.. ++.... ... ..+.|+....+.. +. ......|... -+|.+++..++|+.+.++.+.+ .||
T Consensus 100 LKfGIY~~~G~~tca~~-~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~-WGV 177 (357)
T PLN03231 100 LKLGIHVMRGISTTAVK-KKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYAS-WGI 177 (357)
T ss_pred cceEEEecCCccchhcc-cCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHH-hCC
Confidence 9975433221 111100 000 0111221111100 00 0011223322 4688999999999999999999 999
Q ss_pred CeEEEccc
Q 004765 367 DGFRFDGV 374 (732)
Q Consensus 367 DGfR~D~~ 374 (732)
|=+.+|..
T Consensus 178 DylK~D~c 185 (357)
T PLN03231 178 DFIKHDCV 185 (357)
T ss_pred CEEeeccc
Confidence 99999964
No 197
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=41.47 E-value=2.9e+02 Score=29.42 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004765 282 DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWL 361 (732)
Q Consensus 282 ~d~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl 361 (732)
+.+++.|+.|+++|+.|..-+...-.+. +++. .. .+++++.++...
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~--------~~~~-----------------------~~---~~~~~~~~~~~~ 165 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCP--------YEGE-----------------------VP---PEAVADVAERLF 165 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCC--------CCCC-----------------------CC---HHHHHHHHHHHH
Confidence 4588888888888888876555421111 0000 00 257888888887
Q ss_pred HHcCCCeEEE-cccc
Q 004765 362 EEYKFDGFRF-DGVT 375 (732)
Q Consensus 362 ~e~gvDGfR~-D~~~ 375 (732)
+ .|+|.+++ |.+.
T Consensus 166 ~-~G~d~i~l~DT~G 179 (287)
T PRK05692 166 A-LGCYEISLGDTIG 179 (287)
T ss_pred H-cCCcEEEeccccC
Confidence 7 89998887 4443
No 198
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=40.72 E-value=91 Score=27.29 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=36.4
Q ss_pred EEEEEeCCC--cCeEEEEee---cCCCCCc-cccccc---CCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004765 100 ITYREWAPG--AKSASLIGD---FNNWNPN-ADIMTQ---NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 164 (732)
Q Consensus 100 v~f~~WAP~--A~~V~L~gd---fn~w~~~-~~~m~~---~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~ 164 (732)
++|++=+.+ -+++.|+|+ +.+|+.. +.+|.. .+...|++.+.-.. + ....|||.+...+
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~-----~~veYky~v~~~~ 69 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-G-----FSSEYNYYVVDDR 69 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-C-----CcEEEEEEEEcCC
Confidence 456554433 378899985 4679875 467853 23448988875322 1 1358999885433
No 199
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=40.26 E-value=31 Score=36.20 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=35.0
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 299 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vi 299 (732)
+.++.++++|++.|+|.+...+. ...+.++ +.++++++.+.+.++||.|.
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~-----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDE-----RLARLDW--------SKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCccc-----ccccccC--------CHHHHHHHHHHHHHcCCCce
Confidence 68889999999999996421110 0001111 46789999999999999986
No 200
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=40.12 E-value=39 Score=33.70 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=29.7
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 298 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~V 298 (732)
..+..|++||.+.|=++|+-- +-..+||+.+.++|-++||.+
T Consensus 139 tAiaml~dmG~~SiKffPm~G--------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 139 TAIAMLKDMGGSSIKFFPMGG--------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHTT--EEEE---TT--------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCcee
Confidence 577899999999999988741 124899999999999999886
No 201
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=40.06 E-value=3.2e+02 Score=33.39 Aligned_cols=133 Identities=15% Similarity=0.194 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHc-CCEEEEEecccccCCCccccccCCCCCC-----CCccccCCCCCcccCCC-CCCCCCCHH---HH
Q 004765 281 PDDLKSLIDKAHEL-GLLVLMDIVHSHASNNVLDGLNMFDGTD-----GHYFHSGSRGYHWMWDS-RLFNYGSWE---VL 350 (732)
Q Consensus 281 ~~d~k~LV~~aH~~-GI~VilDvV~nH~s~~~~~~~~~~dg~~-----~~yf~~~~~g~~~~w~~-~~ln~~~~e---v~ 350 (732)
.+.+|++++++|+. |-++++-+ +|.+....... .+.+.. ..+....+......-.. .--.....+ +.
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~~~~~-~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i 550 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKGSTRL-GWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVR 550 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccccccc-cccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHH
Confidence 57899999999999 69998887 66665431110 010000 00000000000000000 000112222 34
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCC
Q 004765 351 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP 420 (732)
Q Consensus 351 ~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p 420 (732)
+.+..+++.-. +.|+||+-+-+++..+-..+- .+.+..-...+|+.. .....|+.++.+.|++.-+
T Consensus 551 ~~f~~aA~~a~-~aGfDgveih~ahGyLl~qFl--sp~~N~RtD~yGGsl-enR~r~~~eiv~~ir~~~~ 616 (765)
T PRK08255 551 DDFVAAARRAA-EAGFDWLELHCAHGYLLSSFI--SPLTNQRTDEYGGSL-ENRLRYPLEVFRAVRAVWP 616 (765)
T ss_pred HHHHHHHHHHH-HcCCCEEEEecccchHHHHhc--CCCCCCCCCCCCCCH-HHHhHHHHHHHHHHHHhcC
Confidence 44445555544 489999999998643322111 111112222234421 2235677788888877643
No 202
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=39.46 E-value=68 Score=34.00 Aligned_cols=130 Identities=21% Similarity=0.293 Sum_probs=77.8
Q ss_pred hHHHhhccccccCCccEEEECCcccCC-CCCCCCCccccccCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 233 NFRDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 233 ~~~~~~L~ylk~LGv~~I~L~Pi~e~~-~~~~~GY~~~~~~a~d~~~Gt---~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
+..+++..-||+.|+|++-+ +.. .++.--|..+|- +....++ --|.+.+|+.|.++||.+|.-+|.=--+
T Consensus 77 k~~de~fk~ikdn~~Na~Vi----D~Kdd~G~lty~s~d~--~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~ 150 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVI----DVKDDYGELTYPSSDE--INKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDT 150 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEE----EecCCCccEeccccch--hhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeee
Confidence 44458888999999999843 321 223344554442 2222232 4578899999999999999998842111
Q ss_pred CCc---cccccCCCC-CCCCccccC-----CCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 004765 309 NNV---LDGLNMFDG-TDGHYFHSG-----SRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 375 (732)
Q Consensus 309 ~~~---~~~~~~~dg-~~~~yf~~~-----~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~~~ 375 (732)
.-. ..-+..+.+ .+..-|..+ ..+.|| .+--++.+++|=+.+++--++ ||+|-..||-+.
T Consensus 151 ~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehW------Vd~y~~~~WeYNvtIAKEa~~-fGfdEiQFDYIR 219 (400)
T COG1306 151 ILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHW------VDAYDKNLWEYNVTIAKEAAK-FGFDEIQFDYIR 219 (400)
T ss_pred eEEeecCceEEEEcCCCcchhhhcccccccccceee------ecccchhhhhhhHHHHHHHHH-cCccceeeeEEE
Confidence 100 000111111 111111111 122333 355678999999999999888 999999999764
No 203
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=38.11 E-value=51 Score=33.49 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=40.2
Q ss_pred hhccccccCCccEEEECCcccCCCCC--CC--CCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYA--SF--GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 300 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~--~~--GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vil 300 (732)
+....|+++|+..|+|+|.+...... .. -|...+.-. =+.++++++.+.+.++|+.|++
T Consensus 149 ~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~-----~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 149 QALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPA-----PSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCC-----cCHHHHHHHHHHHHHcCCeEEe
Confidence 56667888899999999987643211 01 132222222 2578999999999999999974
No 204
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=36.51 E-value=39 Score=32.23 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=38.2
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 303 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV 303 (732)
||.-.. +-.+-|+++||..- -.|-|..-||+.+.+++++|+++|++||+=..
T Consensus 14 D~~~mk-~Aa~~L~~fgi~ye---------------------~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgA 65 (162)
T COG0041 14 DWDTMK-KAAEILEEFGVPYE---------------------VRVVSAHRTPEKMFEYAEEAEERGVKVIIAGA 65 (162)
T ss_pred hHHHHH-HHHHHHHHcCCCeE---------------------EEEEeccCCHHHHHHHHHHHHHCCCeEEEecC
Confidence 454444 56677888888543 12334556999999999999999999998643
No 205
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=33.95 E-value=44 Score=38.50 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=45.8
Q ss_pred HHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEecccc
Q 004765 235 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSH 306 (732)
Q Consensus 235 ~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI-~VilDvV~nH 306 (732)
.+++|..|+++|++.|.|.|=- . +..-.-.+ .|-.|.+++.+.++.|++.|+ .|-+|+.+.-
T Consensus 268 t~e~L~~Lk~~Gv~RISIGvQS-~--------~d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GL 330 (488)
T PRK08207 268 TEEKLEVLKKYGVDRISINPQT-M--------NDETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGL 330 (488)
T ss_pred CHHHHHHHHhcCCCeEEEcCCc-C--------CHHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 3578999999999999876511 1 11111233 455689999999999999999 7889998753
No 206
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=33.65 E-value=1.9e+02 Score=33.22 Aligned_cols=101 Identities=12% Similarity=0.249 Sum_probs=61.5
Q ss_pred CCcHHhHHHhhccccccCCccEEEECCcccC--CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 228 INTYANFRDDVLPRIKRLGYNAVQIMAVQEH--SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 228 ~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~--~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
...|.-.. +-+..+++||+|+.-+.=-+.- |. |.. -.+.-...+=.++||++|+++||.+|+.+.
T Consensus 67 ~D~Yhry~-eDi~l~~~lG~~~yR~si~WsRi~P~----g~~------~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~-- 133 (474)
T PRK09852 67 IDFYHRYK-EDIALMAEMGFKVFRTSIAWSRLFPQ----GDE------LTPNQQGIAFYRSVFEECKKYGIEPLVTLC-- 133 (474)
T ss_pred CchhhhhH-HHHHHHHHcCCCeEEeeceeeeeeeC----CCC------CCCCHHHHHHHHHHHHHHHHcCCEEEEEee--
Confidence 34565555 7889999999999876432211 10 000 001112356688999999999999998876
Q ss_pred ccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004765 306 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 365 (732)
Q Consensus 306 H~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~g 365 (732)
|..- |.++..... -+.++++.+.+.+-++..+++||
T Consensus 134 H~~~-------------P~~l~~~~G-----------GW~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 134 HFDV-------------PMHLVTEYG-----------SWRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred CCCC-------------CHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 3321 122211001 13567888888888877777765
No 207
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=32.92 E-value=40 Score=37.84 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=32.1
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 268 VTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 268 ~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
...+-.++...|+..+++++++.||++|+.|++|-+.
T Consensus 165 lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 165 LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred EEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 4445567788999999999999999999999999873
No 208
>PRK01060 endonuclease IV; Provisional
Probab=32.90 E-value=54 Score=34.36 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=35.9
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 298 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~V 298 (732)
+.|+.++++|+++|+|.+--.+ .+ .+..-+++++++|.+.+.++||++
T Consensus 16 ~~l~~~~~~G~d~vEl~~~~p~------~~--------~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 16 GAVAEAAEIGANAFMIFTGNPQ------QW--------KRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHcCCCEEEEECCCCC------CC--------cCCCCCHHHHHHHHHHHHHcCCCC
Confidence 7889999999999999653111 11 121237889999999999999985
No 209
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=32.41 E-value=49 Score=36.38 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=46.6
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCCC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASNN 310 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~-VilDvV~nH~s~~ 310 (732)
++.|..|+++|+|.|.|-. ... +..-.-.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-..+
T Consensus 100 ~e~l~~l~~~Gv~risiGv-qS~--------~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-QSF--------RDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-ccC--------ChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 3788999999999997542 211 11122233 5667899999999999999996 7799998755443
No 210
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=32.26 E-value=61 Score=34.32 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=43.8
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
++.+..||++|++.|.+. +| . +..-|-.+.+. .+.++..+.++.||+.||.|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~-------~~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-T-------SQEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-C-------CHHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 378889999999999876 23 1 11122233333 5889999999999999999988877654
No 211
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=31.97 E-value=1.2e+02 Score=31.56 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhccCCCEEEEEe
Q 004765 349 VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAVSIGE 427 (732)
Q Consensus 349 v~~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~-~~~~l~~~~~~v~~~~p~~~~iaE 427 (732)
.++-+++++..++++||+||+-+|-=.. ..+.+ -..+++++++.+++.. .++++-
T Consensus 97 ~~~~fv~S~~~~l~~~~fDGiDiDwE~~----------------------~~d~~~f~~ll~~l~~~l~~~~--~lt~a~ 152 (253)
T cd06544 97 WVSNAVSSLTSIIQTYNLDGIDIDYEHF----------------------PADPDTFVECIGQLITELKNNG--VIKVAS 152 (253)
T ss_pred HHHHHHHHHHHHHHHhCCCceeeecccC----------------------CcCHHHHHHHHHHHHHHhhhcC--CeEEEE
Confidence 3445577888889999999999984210 01222 2367888888887643 555554
Q ss_pred c
Q 004765 428 D 428 (732)
Q Consensus 428 ~ 428 (732)
.
T Consensus 153 v 153 (253)
T cd06544 153 I 153 (253)
T ss_pred e
Confidence 3
No 212
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=31.91 E-value=42 Score=37.09 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=45.9
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 309 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~-VilDvV~nH~s~ 309 (732)
+++|..|+++|+|.|.|- |.... ..- ...-.|-.+.++..+.++.+++.|+. |-+|++++.-..
T Consensus 108 ~e~l~~l~~~G~~rvslG-vQS~~--------~~~-L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLG-MQSAA--------PHV-LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------HHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 478899999999999753 32211 111 11123446889999999999999999 999999876544
No 213
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.60 E-value=60 Score=33.83 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=34.2
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 299 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vi 299 (732)
+.|+.++++||++|+|..-.. ..| . +. .+..++++|.+.+.+.||+|.
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~-----------~~~-~--~~-~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRP-----------HAF-A--PD-LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCc-----------ccc-c--cc-cCchHHHHHHHHHHHcCCeEE
Confidence 789999999999999853111 111 1 11 134678999999999999985
No 214
>PRK12928 lipoyl synthase; Provisional
Probab=31.42 E-value=80 Score=33.71 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=47.0
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 301 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilD 301 (732)
|..++. +.|..|+++|++.|.+.+... |+-..-+=.+|=+|++|..+-+.|.+.|.+-+.-
T Consensus 217 T~ed~~-etl~~Lrel~~d~v~i~~Yl~----------p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~ 277 (290)
T PRK12928 217 TEDEVI-ETLRDLRAVGCDRLTIGQYLR----------PSLAHLPVQRYWTPEEFEALGQIARELGFSHVRS 277 (290)
T ss_pred CHHHHH-HHHHHHHhcCCCEEEEEcCCC----------CCccCCceeeccCHHHHHHHHHHHHHcCCceeEe
Confidence 667777 799999999999998776542 2222334478889999999999999999876643
No 215
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=31.28 E-value=51 Score=35.57 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=43.2
Q ss_pred HhhccccccCCcc-EEEECCcccCCCCCCCCCccccc-cCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 236 DDVLPRIKRLGYN-AVQIMAVQEHSYYASFGYHVTNF-FAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 236 ~~~L~ylk~LGv~-~I~L~Pi~e~~~~~~~GY~~~~~-~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
++.|..++++|++ .|.|-. |+.. ..-. ..+...+ |.+++.+.++.+|++||.|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~-------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAN-------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCC-------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4788889999998 576543 1111 1111 1344555 89999999999999999999998875
No 216
>PRK07094 biotin synthase; Provisional
Probab=30.78 E-value=46 Score=35.87 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=44.0
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
++.+..|++.|++.|.+. + |+. +..-|-.+.+ -.+.++..+.++.||+.||.|-.++++.+
T Consensus 129 ~e~l~~Lk~aG~~~v~~g-l-Es~-------~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl 189 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLR-H-ETA-------DKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGL 189 (323)
T ss_pred HHHHHHHHHcCCCEEEec-c-ccC-------CHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEEC
Confidence 467889999999998742 2 211 1222333444 36889999999999999999988888754
No 217
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=30.75 E-value=56 Score=35.92 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 310 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV~nH~s~~ 310 (732)
|.+-|+++.+.||+.||-||-|=|+.|+.-.
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 5788999999999999999999999999643
No 218
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=30.52 E-value=48 Score=30.41 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 004765 276 SRCGTPDDLKSLIDKAHELGLLVLMD 301 (732)
Q Consensus 276 ~~~Gt~~d~k~LV~~aH~~GI~VilD 301 (732)
.++-+..|++.+-....++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 56778999999999999999999998
No 219
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=30.39 E-value=3e+02 Score=30.57 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCC---CHHHHHHHHHHHHHH
Q 004765 284 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYG---SWEVLRFLLSNARWW 360 (732)
Q Consensus 284 ~k~LV~~aH~~GI~VilDvV~nH~s~~~~~~~~~~dg~~~~yf~~~~~g~~~~w~~~~ln~~---~~ev~~~l~~~l~~W 360 (732)
=+.|+++|+++|+..++=++ -++|.|+......... +...-|.. -...-.||.++++++
T Consensus 106 QrwfL~~Ak~rGV~~f~aFS----------------NSPP~~MT~NG~~~g~--~~~~~NLk~d~y~~FA~YLa~Vv~~~ 167 (384)
T PF14587_consen 106 QRWFLKAAKERGVNIFEAFS----------------NSPPWWMTKNGSASGG--DDGSDNLKPDNYDAFADYLADVVKHY 167 (384)
T ss_dssp HHHHHHHHHHTT---EEEE-----------------SSS-GGGSSSSSSB-S---SSS-SS-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEee----------------cCCCHHHhcCCCCCCC--CccccccChhHHHHHHHHHHHHHHHH
Confidence 45578999999999876222 1222233222111111 11122222 234567899999998
Q ss_pred HHHcCCCeEEEcccccccccccCccccccCCcccccCcc-cChhHHHHHHHHHHhhhccCCC-EEEEEecC
Q 004765 361 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA-TDVDAVVYLMLVNDMIHGLYPE-AVSIGEDV 429 (732)
Q Consensus 361 l~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~v~~~~p~-~~~iaE~~ 429 (732)
+. .|+.|+.+.-+-.. .+....+.+-|.. .+.+...+++.+...+++...+ .++++|..
T Consensus 168 -~~---~GI~f~~IsP~NEP------~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~ 228 (384)
T PF14587_consen 168 -KK---WGINFDYISPFNEP------QWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAG 228 (384)
T ss_dssp -HC---TT--EEEEE--S-T------TS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEES
T ss_pred -Hh---cCCccceeCCcCCC------CCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchh
Confidence 54 47789988765221 1221112222332 3345568999999999988765 46677764
No 220
>PLN02899 alpha-galactosidase
Probab=28.83 E-value=1e+03 Score=28.28 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=75.9
Q ss_pred HHhHHHhhccccccCCccEEEECCcccCCC-----CCCCCCcc---ccccCCCC-CCC---CHHHHHHHHHHHHHcCCEE
Q 004765 231 YANFRDDVLPRIKRLGYNAVQIMAVQEHSY-----YASFGYHV---TNFFAPSS-RCG---TPDDLKSLIDKAHELGLLV 298 (732)
Q Consensus 231 ~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~-----~~~~GY~~---~~~~a~d~-~~G---t~~d~k~LV~~aH~~GI~V 298 (732)
++..++..-.-|+++||+.|-|==-+..+. ..+.|.++ ..-..+|| ||= +...||.|.|.+|++|++.
T Consensus 50 i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKF 129 (633)
T PLN02899 50 FLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKF 129 (633)
T ss_pred HHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhCCcce
Confidence 444444344579999999997744332211 11222222 22334443 442 2357999999999999987
Q ss_pred EEEecccccCC----Ccc-cc---ccCCCCCCCCccccCC--CCCcccCCC---CCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004765 299 LMDIVHSHASN----NVL-DG---LNMFDGTDGHYFHSGS--RGYHWMWDS---RLFNYGSWEVLRFLLSNARWWLEEYK 365 (732)
Q Consensus 299 ilDvV~nH~s~----~~~-~~---~~~~dg~~~~yf~~~~--~g~~~~w~~---~~ln~~~~ev~~~l~~~l~~Wl~e~g 365 (732)
=|=+...-... +.+ .+ -..+.|....+...+- ......|.. ...|...+..+.|+-+.++.|.+ .|
T Consensus 130 GIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~~~g~~~vDa~~~~g~a~~~Sla~tfAs-WG 208 (633)
T PLN02899 130 GIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWMSHGFMSVNTKLGAGKAFLRSLYDQYAE-WG 208 (633)
T ss_pred EEEecCCCcccccccCCccccccccccccccccccchhhccccccccccCCCCcccccccccchhhhhHHHHHHHHH-hC
Confidence 55433321100 000 00 0012222112222111 011122322 24566677788899888899988 99
Q ss_pred CCeEEEccc
Q 004765 366 FDGFRFDGV 374 (732)
Q Consensus 366 vDGfR~D~~ 374 (732)
||=+.+|.+
T Consensus 209 VDyLKyD~c 217 (633)
T PLN02899 209 VDFVKHDCV 217 (633)
T ss_pred CCEEEEcCC
Confidence 999999964
No 221
>PRK05939 hypothetical protein; Provisional
Probab=28.64 E-value=68 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 277 RCGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 277 ~~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
..|...+++++++.||++|+.||+|-++
T Consensus 143 ptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 143 PGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 3678899999999999999999999764
No 222
>PRK05967 cystathionine beta-lyase; Provisional
Probab=28.62 E-value=69 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 278 CGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 278 ~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
.++..+++++++.||++|+-||+|-++.
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 6899999999999999999999998874
No 223
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=28.35 E-value=4e+02 Score=32.01 Aligned_cols=124 Identities=11% Similarity=0.014 Sum_probs=74.1
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHH-HHHHHHHHHH-cCCEEEEEecccccCCCcccc
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD-LKSLIDKAHE-LGLLVLMDIVHSHASNNVLDG 314 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d-~k~LV~~aH~-~GI~VilDvV~nH~s~~~~~~ 314 (732)
..|++|+++|+|+|+|-.+....+++. +...|=++.++=-.+| |-+..=.++. .|++|..=+..--+.-.
T Consensus 338 ~l~~ri~~~~~~~VyLqafadp~gdg~----~~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~---- 409 (672)
T PRK14581 338 KLVQRISDLRVTHVFLQAFSDPKGDGN----IRQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMD---- 409 (672)
T ss_pred HHHHHHHhcCCCEEEEEeeeCCCCCCc----eeeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCC----
Confidence 788999999999999999987655432 2333344444444444 5555456664 49999866654322110
Q ss_pred ccCCCCCCC--CccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 004765 315 LNMFDGTDG--HYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 373 (732)
Q Consensus 315 ~~~~dg~~~--~yf~~~~-~g~~~~w~~~~ln~~~~ev~~~l~~~l~~Wl~e~gvDGfR~D~ 373 (732)
...+ ..+.... ....-.-+.+-|..-+|++|+.|.++..-...--.|||+=|.-
T Consensus 410 -----~~~~~~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 410 -----PSLPRITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred -----cccchhhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 0000 0010000 0000011223566778999999999999999844899988753
No 224
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=28.05 E-value=58 Score=36.78 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=44.5
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE-EEecccccCCC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASNN 310 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vi-lDvV~nH~s~~ 310 (732)
++.|..++++|+|.|.|- |.... ......+. |--+.++..+.|+.|++.|+.+| +|+.++.-..+
T Consensus 141 ~e~l~~l~~~G~~rvslG-vQS~~--------~~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 141 AEKLALLAARGVNRLSIG-VQSFH--------DSELHALH-RPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 478899999999998753 22110 01111222 22378999999999999999865 99998766544
No 225
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=27.94 E-value=59 Score=36.05 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
++++|..|++=|.+++|.||.|=|+.-+.
T Consensus 244 ~~e~L~~ll~Fa~~kniHvI~DEIya~sV 272 (471)
T KOG0256|consen 244 SPEELISLLNFASRKNIHVISDEIYAGSV 272 (471)
T ss_pred CHHHHHHHHHHHhhcceEEEeehhhcccc
Confidence 48999999999999999999999987554
No 226
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=27.79 E-value=1.6e+02 Score=25.46 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=32.1
Q ss_pred CcCeEEEEeec---CCCCCcccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004765 108 GAKSASLIGDF---NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 165 (732)
Q Consensus 108 ~A~~V~L~gdf---n~w~~~~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~ 165 (732)
--+.++|+|+- .+|+ .+.+|.-. .+.|++.+.-.. +. .-.|||.+...++
T Consensus 14 ~Gq~l~v~G~~~~LG~W~-~~~~l~~~-~~~W~~~~~l~~-~~-----~ieyKy~~~~~~~ 66 (92)
T cd05818 14 FGEHVAILGSTKELGSWK-KKVPMNWT-ENGWVCDLELDG-GE-----LVEYKFVIVKRDG 66 (92)
T ss_pred CCCEEEEEeChHHHCCCC-CCCccccC-CCCEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 34688999964 6898 44567544 467988775321 11 3589998865444
No 227
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=27.58 E-value=1.2e+02 Score=26.56 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=32.7
Q ss_pred cCeEEEEeec---CCCCCc-ccccccCCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCC
Q 004765 109 AKSASLIGDF---NNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 164 (732)
Q Consensus 109 A~~V~L~gdf---n~w~~~-~~~m~~~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~ 164 (732)
-+.|+|+|+- .+|+.. +.+|.......|++.|.-. .+. .-.|||.+...+
T Consensus 15 Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp-~~~-----~veyKyv~~~~~ 68 (97)
T cd05810 15 GQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLP-AST-----NVEWKCLKRNET 68 (97)
T ss_pred CCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcC-CCC-----eEEEEEEEEcCC
Confidence 4688999964 589864 4577766778999888632 111 347888665443
No 228
>PRK09028 cystathionine beta-lyase; Provisional
Probab=27.01 E-value=76 Score=35.44 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 278 CGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 278 ~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
.|...+++++++.||++|+.||+|-++.
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4788999999999999999999998764
No 229
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=26.73 E-value=59 Score=35.97 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 276 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 276 ~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
+..|+..+++++++.||++|+.||+|-++.
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 446888999999999999999999998755
No 230
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=26.49 E-value=3e+02 Score=24.91 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=28.2
Q ss_pred EEEEE---eCCCcCeEEEEee---cCCCCCcc-cccccC-------CCCEEEEEeC
Q 004765 100 ITYRE---WAPGAKSASLIGD---FNNWNPNA-DIMTQN-------EFGVWEIFLP 141 (732)
Q Consensus 100 v~f~~---WAP~A~~V~L~gd---fn~w~~~~-~~m~~~-------~~GvW~i~ip 141 (732)
+.|.+ +.+.-++|+|+|+ +.+|+... .+|... ....|++.+.
T Consensus 3 ~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~ 58 (112)
T cd05806 3 FRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVE 58 (112)
T ss_pred EEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEE
Confidence 44555 4577789999984 66898643 566543 3347988885
No 231
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.44 E-value=68 Score=33.64 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=35.6
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 299 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vi 299 (732)
+.|+.++++||++|+|.+ -+.. -+ +++.--+++++++|.+.+-++||+|.
T Consensus 20 e~l~~~~~~G~~~VEl~~-~~~~----~~--------~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSV-DETD----DR--------LSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEec-CCcc----ch--------hhccCCCHHHHHHHHHHHHHcCCCce
Confidence 788999999999999943 1110 00 11111257899999999999999986
No 232
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=26.35 E-value=67 Score=32.50 Aligned_cols=41 Identities=10% Similarity=0.260 Sum_probs=31.1
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL 297 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~ 297 (732)
..+..|+++|.+.|=.+|+-- +-..+||+++.++|-++|+.
T Consensus 139 tAiaml~dmG~~SiKffPM~G--------------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 139 TAIAMLKDMGGSSVKFFPMGG--------------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCCc
Confidence 678899999999999888741 12367777777777777764
No 233
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=26.15 E-value=81 Score=34.95 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 278 CGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 278 ~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
.|...+++++++.||++|+.||+|-++.
T Consensus 148 ~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 148 TFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 4889999999999999999999998765
No 234
>PRK06256 biotin synthase; Validated
Probab=26.13 E-value=60 Score=35.20 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=43.8
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
++.+..||++|++.|.+.. |+ . ..-|-.+.+. .+.++..+.++.||+.||.|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Et-s-------~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ET-S-------RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--cc-C-------HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 4788899999999997732 32 1 1223334443 4789999999999999999988877654
No 235
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.06 E-value=1.3e+02 Score=27.13 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=39.3
Q ss_pred hccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 004765 238 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 300 (732)
Q Consensus 238 ~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vil 300 (732)
....+..+|++++.+.+...... ..--....|..-+=+.=|...+..++++.||++|++||.
T Consensus 18 ~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 18 IAATLSSTGTPAFFLHPTEALHG-DLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHhhcCCCceEEcccchhhcc-ccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 34455678999987755321110 001122333333446667889999999999999999884
No 236
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=25.74 E-value=78 Score=33.66 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=36.1
Q ss_pred ccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 004765 241 RIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 307 (732)
Q Consensus 241 ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~ 307 (732)
.+..-.+..|.+.+ ..++. | ..=+.+++++|++.||++|+.||+|-++...
T Consensus 127 ~~~~~~~~~v~i~~-~~~~t----G-----------~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 127 AAKTPKTKLLYLNN-PNNPT----G-----------AVLSEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred hhcCccceEEEEEC-CCCCC----C-----------cccCHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 34455677887766 22221 2 1125789999999999999999999987643
No 237
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.84 E-value=79 Score=36.01 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=45.0
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 308 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~-VilDvV~nH~s 308 (732)
++.|..|+++|+|.|.|-. ... +..-.-.+ .|-.+.++..+.|+.|++.|+. |-+|+.+..-+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~--------~~~vl~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDF--------DPQVQKAI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 4789999999999997643 111 11111122 3447899999999999999997 88999876544
No 238
>PRK07324 transaminase; Validated
Probab=24.45 E-value=1.1e+02 Score=33.49 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 004765 279 GTPDDLKSLIDKAHELGLLVLMDIVHSHA 307 (732)
Q Consensus 279 Gt~~d~k~LV~~aH~~GI~VilDvV~nH~ 307 (732)
-+.++++++++.|+++|+.||.|-++.+.
T Consensus 170 ~~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 170 MDRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 36899999999999999999999987654
No 239
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=24.40 E-value=81 Score=32.89 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEe
Q 004765 281 PDDLKSLIDKAHELGLLVLMDI 302 (732)
Q Consensus 281 ~~d~k~LV~~aH~~GI~VilDv 302 (732)
.+++++|++.||+.||.|+..+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 5789999999999999999884
No 240
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=24.38 E-value=51 Score=34.92 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 278 CGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 278 ~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
+|...+++++++.||++|+.||+|-++
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 466678999999999999999999874
No 241
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=23.83 E-value=65 Score=34.59 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 279 GTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 279 Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
|...+++++++.||++|+.||+|-++
T Consensus 146 G~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 146 GDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCccCHHHHHHHHHHcCCEEEEEccc
Confidence 45567899999999999999999985
No 242
>PRK07050 cystathionine beta-lyase; Provisional
Probab=23.65 E-value=95 Score=34.60 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 278 CGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 278 ~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
.|.+.+++++++.||++|+.||+|-.++.
T Consensus 163 ~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 163 TMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 47899999999999999999999988654
No 243
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=23.52 E-value=62 Score=35.26 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 276 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 276 ~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
...|+..+++++++.||++|+.||+|-++.
T Consensus 150 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 150 GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 345778899999999999999999998865
No 244
>PRK05968 hypothetical protein; Provisional
Probab=23.43 E-value=94 Score=34.53 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 274 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 274 ~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
|....+...+++++++.||++|+.||+|-.+
T Consensus 156 pt~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 156 PTSWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3455678899999999999999999999754
No 245
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.29 E-value=1.5e+02 Score=30.99 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 004765 351 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 430 (732)
Q Consensus 351 ~~l~~~l~~Wl~e~gvDGfR~D~~~~m~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~p~~~~iaE~~~ 430 (732)
+.+..-+.+|++.+.|-|-+-|-+..+.+. |. .=+|.+...+|+ |+.+++-|.+|
T Consensus 105 ~e~~~~~~~wLer~~i~~~~~~kIk~LSKG--------------------nq---QKIQfisaviHe--PeLlILDEPFS 159 (300)
T COG4152 105 AEIQKKLQAWLERLEIVGKKTKKIKELSKG--------------------NQ---QKIQFISAVIHE--PELLILDEPFS 159 (300)
T ss_pred HHHHHHHHHHHHhccccccccchHHHhhhh--------------------hh---HHHHHHHHHhcC--CCEEEecCCcc
Confidence 344556889999999999999998877432 22 235566677764 99999999998
Q ss_pred C
Q 004765 431 G 431 (732)
Q Consensus 431 ~ 431 (732)
|
T Consensus 160 G 160 (300)
T COG4152 160 G 160 (300)
T ss_pred C
Confidence 7
No 246
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=23.18 E-value=76 Score=36.14 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=45.7
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEecccccCCC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSHASNN 310 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI-~VilDvV~nH~s~~ 310 (732)
++.|..|+++|++.|.|-. ... +..-.-.+ .+-.+.++..+.++.+++.|| .|-+|+.++.-+.+
T Consensus 151 ~e~l~~l~~aG~~risiGv-qS~--------~~~~L~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-QDF--------DPEVQKAV-NRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 4789999999999997532 211 11111122 344689999999999999999 78999988755443
No 247
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=23.09 E-value=1.1e+02 Score=29.46 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=33.4
Q ss_pred ccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 241 RIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 241 ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
-|+.||..+..+. .++..++...-..+.+.++++.|++.|+.|++|.+.
T Consensus 45 ~l~~LG~~~~~~~---------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 45 ALARLGVSVTLVG---------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHCCCcEEEEE---------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 4567888776555 233333332111478999999999999999999874
No 248
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=22.82 E-value=2.9e+02 Score=24.14 Aligned_cols=60 Identities=13% Similarity=0.300 Sum_probs=37.1
Q ss_pred EEEEEeCCC---cCeEEEEee---cCCCCCcc-c-cccc---CCCCEEEEEeCCCCCCCCCCCCCCEEEEEeeCCCC
Q 004765 100 ITYREWAPG---AKSASLIGD---FNNWNPNA-D-IMTQ---NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 165 (732)
Q Consensus 100 v~f~~WAP~---A~~V~L~gd---fn~w~~~~-~-~m~~---~~~GvW~i~ip~~~~g~~~i~hg~~Yk~~~~~~~~ 165 (732)
++|++=+|. -+.|+|+|+ +.+|+... . +|.. .....|++.+.-. .|. -..|||.+...++
T Consensus 5 v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp-~~~-----~~eyK~~~~~~~~ 75 (101)
T cd05807 5 VRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVP-AGT-----TIEFKFIKKNGDN 75 (101)
T ss_pred EEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcC-CCC-----cEEEEEEEECCCC
Confidence 677775543 468999995 56898643 3 3322 3567898887532 222 2478888765544
No 249
>PLN02509 cystathionine beta-lyase
Probab=22.74 E-value=99 Score=35.37 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=26.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 274 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 274 ~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
|..-.|...+++++++.||++|+.||+|-.+
T Consensus 226 PsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 226 PTNPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 3344578899999999999999999999773
No 250
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=22.71 E-value=1.8e+02 Score=26.72 Aligned_cols=55 Identities=20% Similarity=0.403 Sum_probs=30.5
Q ss_pred EEEEEeC----CCcCeEEEEeecCCCCCc----ccccccC-CCCEEEEEe--CCCCCCCCCCCCCCEEEEEeeCC
Q 004765 100 ITYREWA----PGAKSASLIGDFNNWNPN----ADIMTQN-EFGVWEIFL--PNNADGSPPIPHGSRVKIHMDTP 163 (732)
Q Consensus 100 v~f~~WA----P~A~~V~L~gdfn~w~~~----~~~m~~~-~~GvW~i~i--p~~~~g~~~i~hg~~Yk~~~~~~ 163 (732)
||| +|- .+...+.|.++.|+.... ...|+|. +.++|..++ |...-| .|.|....+
T Consensus 4 VTF-lWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rg--------SY~~~p~~~ 69 (122)
T PF11806_consen 4 VTF-LWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRG--------SYSFIPDVP 69 (122)
T ss_dssp EEE-EEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EE--------EEEEEEES-
T ss_pred EEE-EEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEE--------EEEEEecCc
Confidence 677 776 456778888999987433 4578875 457887765 443322 467766554
No 251
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.70 E-value=39 Score=33.16 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=33.8
Q ss_pred cccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 004765 240 PRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 300 (732)
Q Consensus 240 ~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vil 300 (732)
..++++|++.|+|.+....+.. . . .++++++.+.+.+.||.|..
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~--------~---~------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWD--------E---K------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHT--------H---H------HHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHcCCCEEEEecCCCcccc--------c---c------hHHHHHHHHHHHHcCCeEEE
Confidence 4578999999999886643321 0 0 78899999999999999663
No 252
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=22.65 E-value=1.2e+02 Score=23.70 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCcEEEEEe-CcEEEEEEcCCCCcccceEEcccCCceEEEEEe
Q 004765 635 GDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLD 676 (732)
Q Consensus 635 ~~~vlaf~R-~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vl~ 676 (732)
+..+-.|.| +.++|++-.. ...+|.+.+...|.|.+++.
T Consensus 8 ~~glcgf~r~~kilviiktk---gs~n~~~~~e~~~~ytdv~t 47 (66)
T PF09196_consen 8 EEGLCGFIRFNKILVIIKTK---GSVNYKYKIEEGAIYTDVIT 47 (66)
T ss_dssp -TTEEEEEETTTEEEEEES----TTSSCEEEEECCEEEEETTT
T ss_pred hhcceeEEecCEEEEEEecc---cccceeeeeccCcEEEeeec
Confidence 456889999 6788888754 33567777778899998875
No 253
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=22.60 E-value=76 Score=34.85 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 004765 276 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 306 (732)
Q Consensus 276 ~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH 306 (732)
..+|+..++++|++-||++|+.||+|-.+..
T Consensus 157 ~~~G~~~~l~~i~~la~~~~~~livDea~~~ 187 (370)
T TIGR02539 157 GEYGNLPDAGKVAKVCREKGVPLLLNCAYTV 187 (370)
T ss_pred CCCccccCHHHHHHHHHHcCCeEEEECcccc
Confidence 4458889999999999999999999987654
No 254
>PRK15452 putative protease; Provisional
Probab=22.47 E-value=1.2e+02 Score=34.49 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=34.8
Q ss_pred CcHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 004765 229 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 300 (732)
Q Consensus 229 g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vil 300 (732)
|++..+. ..-+.|.++|++-.-- + ++.-...+ | +.++|++.|+.||++|++|.+
T Consensus 11 g~~e~l~-----aAi~~GADaVY~G~~~-~----~~R~~~~~-------f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 11 GTLKNMR-----YAFAYGADAVYAGQPR-Y----SLRVRNNE-------F-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CCHHHHH-----HHHHCCCCEEEECCCc-c----chhhhccC-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 5655443 4447899999984311 0 01000112 2 568999999999999999976
No 255
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=22.34 E-value=74 Score=35.56 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=45.7
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCCC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASNN 310 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~-VilDvV~nH~s~~ 310 (732)
+++|..++++|+|.|.|-. +... ..-.-.+ .|--+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 115 ~e~l~~l~~~GvnrislGv-QS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGV-QAFQ--------DELLALC-GRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEEc-ccCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3788899999999997532 2111 1111112 3445789999999999999999 7799998866544
No 256
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=21.91 E-value=1e+02 Score=33.51 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 274 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 274 ~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
|....=+.++++++++.|+++|+-||.|=++.++.
T Consensus 154 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 154 PTGRVLSVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 33444568999999999999999999999886654
No 257
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.91 E-value=78 Score=34.80 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=44.4
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 308 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~-VilDvV~nH~s 308 (732)
+++|..++++|+|.|.| +|.... ..-.-.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-+
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~--------d~vL~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMN--------NNILKQL-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 47889999999999864 333221 0111111 3446899999999999999997 88999987543
No 258
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=21.77 E-value=73 Score=35.03 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecc
Q 004765 278 CGTPDDLKSLIDKAHELGLLVLMDIVH 304 (732)
Q Consensus 278 ~Gt~~d~k~LV~~aH~~GI~VilDvV~ 304 (732)
.|...+++++++.||++|+.||+|-.+
T Consensus 138 ~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 138 TLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 366677999999999999999999764
No 259
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.72 E-value=75 Score=32.58 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=37.8
Q ss_pred hccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 238 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 238 ~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
......++|.++|-++.-+..-..+.|.| ..+++++++++||+.||+||+..++.
T Consensus 81 ~ve~A~~~GAd~vd~vi~~~~~~~~~~~~-------------~~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 81 EVEEAIRLGADEVDVVINYGALGSGNEDE-------------VIEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHTT-SEEEEEEEHHHHHTTHHHH-------------HHHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHcCCceeeeeccccccccccHHH-------------HHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 45667889999998876552211111111 25899999999999999999986553
No 260
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=21.69 E-value=1.2e+02 Score=35.09 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCCCceEEEEecCCCCCCCCCCcHHhHHHhhccccccCCccEEEECCcccCC--CCCCCCCccccccCCCCCCCCHHHHH
Q 004765 208 KPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHS--YYASFGYHVTNFFAPSSRCGTPDDLK 285 (732)
Q Consensus 208 ~~~~~~IYE~hv~~~~~~~~~g~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~--~~~~~GY~~~~~~a~d~~~Gt~~d~k 285 (732)
+-..+-+|.++.. ..-++|+|..++-..++-+..-|.+.++|+|+.... ...+--|.+++=+++++-|=+++.+-
T Consensus 14 ~g~~v~L~~~~~~---~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~~~~SPYs~~S~~a~N~~~Id~~~l~ 90 (520)
T COG1640 14 WGSGVQLYSLRLP---GSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAYEEDSPYSPSSRRALNPLYIDVEALP 90 (520)
T ss_pred ccceeEEeeeccC---CCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccccCCCCCCchhhhccCceeecHHHhh
Confidence 4456666665443 234789999888666777779999999999998653 12245688888888888888877776
Q ss_pred HH
Q 004765 286 SL 287 (732)
Q Consensus 286 ~L 287 (732)
++
T Consensus 91 e~ 92 (520)
T COG1640 91 EF 92 (520)
T ss_pred hh
Confidence 66
No 261
>PTZ00376 aspartate aminotransferase; Provisional
Probab=21.52 E-value=1.3e+02 Score=33.52 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=43.2
Q ss_pred cHHhHHHhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 004765 230 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 309 (732)
Q Consensus 230 ~~~~~~~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s~ 309 (732)
++..+. +.+...+ .-+.++++|-..+|. ...=+.+++++|++.|+++|+-||.|-++.+...
T Consensus 162 d~~~l~-~~~~~~~--~~~~~~~~~~p~NPT---------------G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 162 DFDGML-EDLRTAP--NGSVVLLHACAHNPT---------------GVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHH-HHHHhCC--CCCEEEEeCCCCCCC---------------CCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 555555 3432221 125677777665554 3334789999999999999999999999887754
No 262
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.42 E-value=1e+02 Score=34.11 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=45.7
Q ss_pred hhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE-EEecccccCCC
Q 004765 237 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASNN 310 (732)
Q Consensus 237 ~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~Vi-lDvV~nH~s~~ 310 (732)
++|..|+++|+|.|.|-. .. .+..-+-.+ .+..+.++..+-|+.|++.|+..| +|+.+.....+
T Consensus 108 e~l~~Lk~~Gv~risiGv-qS--------~~~~~L~~l-~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-QS--------FSEEKLKRL-GRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHcCCCEEEecc-Cc--------CCHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 788899999999997643 11 111122223 345689999999999999999864 99998766544
No 263
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.21 E-value=1.1e+02 Score=33.36 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=44.9
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 308 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~-VilDvV~nH~s 308 (732)
+++|..++++|||.|.| .|.... ..-.-.+ .|-.+.++..+.|+.+++.|+. |-+|+.++--+
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~--------~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFN--------EDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 47899999999999974 333221 1111222 4556799999999999999997 66999986544
No 264
>PRK07777 aminotransferase; Validated
Probab=21.18 E-value=1.2e+02 Score=33.26 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
+.+++++|++.|+++|+-||.|-++.+..
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 57999999999999999999999987665
No 265
>PLN00175 aminotransferase family protein; Provisional
Probab=21.12 E-value=1.3e+02 Score=33.58 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 280 TPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 280 t~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
+.+++++|++.|+++|+-||.|-++.+..
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y~~l~ 233 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVYDKLA 233 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccCccc
Confidence 57899999999999999999999988764
No 266
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.89 E-value=81 Score=33.41 Aligned_cols=24 Identities=17% Similarity=0.501 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEec
Q 004765 279 GTPDDLKSLIDKAHELGLLVLMDIV 303 (732)
Q Consensus 279 Gt~~d~k~LV~~aH~~GI~VilDvV 303 (732)
.=.|-.++||++|++- |.|+||+-
T Consensus 134 ~IKE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred CHHHHHHHHHHHhcce-eEEEeecc
Confidence 3468899999999998 99999964
No 267
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.84 E-value=97 Score=34.25 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=44.6
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 309 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~-VilDvV~nH~s~ 309 (732)
++.+..++++|+|.|.|-. ... +..-+-.+ .+-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-qS~--------~~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-QTF--------NDELLKKI-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-ccC--------CHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 3788899999999987543 211 11111122 3456789999999999999998 668998775544
No 268
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.69 E-value=87 Score=34.55 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=44.6
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 309 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~GI~-VilDvV~nH~s~ 309 (732)
++.|..++++|+|.|.|-- .... ..-.-.+ .|-.+.++..+-|+.+++.|+. |-+|+.++--+.
T Consensus 99 ~e~l~~l~~~G~~rvsiGv-qS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL-QAWQ--------NSLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC-ccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 4789999999999987543 2111 1111122 3445799999999999999997 779998775443
No 269
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.62 E-value=45 Score=32.47 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEE
Q 004765 279 GTPDDLKSLIDKAHELGLLVLMD 301 (732)
Q Consensus 279 Gt~~d~k~LV~~aH~~GI~VilD 301 (732)
=+.+++++||+.||++|+.+-|-
T Consensus 164 m~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 164 MDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred hcHHHHHHHHHHHHHcchHHHhc
Confidence 35899999999999999998764
No 270
>PRK08960 hypothetical protein; Provisional
Probab=20.50 E-value=1.3e+02 Score=33.03 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 279 GTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 279 Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
=+.+++++|++.||++|+-||+|=++.+..
T Consensus 182 ~~~~~~~~l~~~~~~~~~~li~De~Y~~~~ 211 (387)
T PRK08960 182 LSRDELAALSQALRARGGHLVVDEIYHGLT 211 (387)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 358999999999999999999999887653
No 271
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=20.42 E-value=77 Score=35.27 Aligned_cols=30 Identities=30% Similarity=0.404 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 004765 276 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 305 (732)
Q Consensus 276 ~~~Gt~~d~k~LV~~aH~~GI~VilDvV~n 305 (732)
..-|...+++++++.||++|+.||+|-+..
T Consensus 182 ~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~ 211 (406)
T TIGR01814 182 YYTGQLFDMAAITRAAHAKGALVGFDLAHA 211 (406)
T ss_pred cccceecCHHHHHHHHHHcCCEEEEEcccc
Confidence 445777789999999999999999998743
No 272
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=20.23 E-value=80 Score=29.33 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCEEEEEecccccC
Q 004765 283 DLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 283 d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
++++|++.||++|+.+|+|-.+.-..
T Consensus 110 ~~~~l~~~~~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 110 PLKEIRKIAKEYGILLLVDAASAGGA 135 (170)
T ss_pred CHHHHHHHHHHcCCEEEEeccccccc
Confidence 34889999999999999997765433
No 273
>PRK05957 aspartate aminotransferase; Provisional
Probab=20.20 E-value=1.4e+02 Score=32.90 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 004765 279 GTPDDLKSLIDKAHELGLLVLMDIVHSHAS 308 (732)
Q Consensus 279 Gt~~d~k~LV~~aH~~GI~VilDvV~nH~s 308 (732)
-++++++++++.||++|+-||.|-++.+..
T Consensus 177 ~~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 177 YPEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred cCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 368899999999999999999999987664
No 274
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.04 E-value=96 Score=35.30 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=45.1
Q ss_pred HhhccccccCCccEEEECCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcC-CEEEEEecccccCCC
Q 004765 236 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG-LLVLMDIVHSHASNN 310 (732)
Q Consensus 236 ~~~L~ylk~LGv~~I~L~Pi~e~~~~~~~GY~~~~~~a~d~~~Gt~~d~k~LV~~aH~~G-I~VilDvV~nH~s~~ 310 (732)
+++|..++++|||.|.| .|..... .-.-. -.|--+.++..+-|+.+++.| +.|.+|++++.-+..
T Consensus 163 ~e~l~~l~~aGvnRiSi-GVQSf~d--------~vLk~-lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT 228 (449)
T PRK09058 163 DEKADAALDAGANRFSI-GVQSFNT--------QVRRR-AGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQT 228 (449)
T ss_pred HHHHHHHHHcCCCEEEe-cCCcCCH--------HHHHH-hCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCC
Confidence 47899999999999953 3332210 00011 123346899999999999999 889999998765543
Done!