BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004766
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/724 (54%), Positives = 516/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/724 (54%), Positives = 517/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 2 SFQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 61
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 62 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 121
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 122 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 181
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 182 KGMFYNSYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 238
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 239 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESSGIAG------ILKWVKLIDNFEGEYDYV 292
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 293 TNEGTVFTFKTNRHSPNYRVINIDFTDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCY 352
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+++GS+ S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 353 LHDVKNTLQLHDLTTGALLKIFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 412
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 413 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 471
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G + +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 472 YGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 531
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 532 AAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIG 591
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WL+KYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 592 HAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 647
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 648 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 704
Query: 728 ASWV 731
W+
Sbjct: 705 VDWI 708
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/724 (54%), Positives = 516/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GG+NGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGANGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/724 (54%), Positives = 515/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTCDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/724 (54%), Positives = 516/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
+GGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 FGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/724 (54%), Positives = 516/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E DPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGTDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYCFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G+PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGMPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/724 (54%), Positives = 516/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCVEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADH+DRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHNDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/724 (54%), Positives = 515/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADH DRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHADRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/724 (54%), Positives = 515/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAG G G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGAGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/724 (54%), Positives = 514/724 (70%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDCPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E DPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGTDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTCKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/724 (54%), Positives = 513/724 (70%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVXDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQXPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSXMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E DPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGXDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+G S+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGXSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/722 (39%), Positives = 408/722 (56%), Gaps = 51/722 (7%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E V D Y G + DPYRWLED + E + +V+ Q +T L R +
Sbjct: 10 LHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAI 68
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+EK+ ++ + APF+ G +++F N GLQ Q+VL+ Q A+V LDPNTLS DG
Sbjct: 69 KEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDG 127
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK 190
T AL ++S S D + LAY+LS +GSDW I LM +E + L KFS I+W + +
Sbjct: 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGN-E 186
Query: 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK--DPEHPKYIFSG 248
GFFYS Y P +G ++ A T+ H+ Y+H LGT Q +D L + +H +Y+
Sbjct: 187 GFFYSSYDKP-DGSELSARTDQ-----HKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-GA 239
Query: 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 308
VTED ++L++ N N++Y DLS P + + DA +
Sbjct: 240 TVTEDDRFLLISAA-NSTSGNRLYVKDLSQENA------------PLLTVQGDLDADVSL 286
Query: 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVS 366
+ N + LTN+DAP +++ VD P W ++IPE ++ VL + +
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTVHSGSGY--LFAE 343
Query: 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426
Y+ D ++ D + + +GSV+ + + +D ++ F ++ P +Y+
Sbjct: 344 YMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403
Query: 427 KTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY 486
K+ + ++R + P F ++ Q F SKDG T++P+ I +K +KLDGS+P +LY
Sbjct: 404 KSGA--ISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKGLKLDGSNPTILY 459
Query: 487 GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546
GYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G KQN FDDFI
Sbjct: 460 GYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFI 518
Query: 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606
+A+EYL + GYT++ +L I GGSNGGLLVGA + QRPDL AL VGV+DMLRYH FT
Sbjct: 519 AAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTA 578
Query: 607 GHAWVSDFGCSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665
G W D+G S + E + +L YSPLHNVR YPST++ TADH+DRVVP
Sbjct: 579 GTGWAYDYGTSADSEAMFDYLKGYSPLHNVR--------PGVSYPSTMVTTADHNDRVVP 630
Query: 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725
HS K AT+Q ++ +P + RIE AGHG G P K+I+++AD Y F
Sbjct: 631 AHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYE 683
Query: 726 LG 727
+G
Sbjct: 684 MG 685
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 483 bits (1242), Expect = e-136, Method: Compositional matrix adjust.
Identities = 284/722 (39%), Positives = 405/722 (56%), Gaps = 51/722 (7%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E V D Y G + DPYRWLED + E + +V+ Q +T L R +
Sbjct: 10 LHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAI 68
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+EK+ ++ + APF G +++F N GLQ Q+VL+ Q A+V LDPNTLS DG
Sbjct: 69 KEKLAASWNYAKEGAPFWWGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDG 127
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK 190
T AL ++S S D + LAY+LS +GSDW I LM +E + L KFS I+W + +
Sbjct: 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGN-E 186
Query: 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK--DPEHPKYIFSG 248
GFFYS Y P +G ++ A T+ H+ Y+H LGT Q +D L + +H +Y+
Sbjct: 187 GFFYSSYDKP-DGSELSARTDQ-----HKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-GA 239
Query: 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 308
VTED ++L++ N N++Y DLS P + + DA +
Sbjct: 240 TVTEDQRFLLISAA-NSTSGNRLYVKDLSQENA------------PLLTVQGDLDADVSL 286
Query: 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVS 366
+ N + LTN+DAP +++ VD P W ++IPE ++ VL + +
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTVHSGSGY--LFAE 343
Query: 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426
Y+ D ++ D + + +GSV+ + D ++ F ++ P +Y+
Sbjct: 344 YMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGYWWDPALYFGFENYAQPPTLYRFEP 403
Query: 427 KTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY 486
K+ + ++R + P F ++ Q F SKDG T++P+ I +K +KLDGS+P +LY
Sbjct: 404 KSGA--ISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKGLKLDGSNPTILY 459
Query: 487 GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546
GYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G KQN FDDFI
Sbjct: 460 GYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFI 518
Query: 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606
+A+EYL + GYT++ +L I GGSNGGLLVGA + QRPDL AL VGV+DMLRYH FT
Sbjct: 519 AAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTA 578
Query: 607 GHAWVSDFGCSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665
G W D+G S + E + +L YSPLHNVR YPST++ TADHDDRVVP
Sbjct: 579 GTGWAYDYGTSADSEAMFDYLKGYSPLHNVR--------PGVSYPSTMVTTADHDDRVVP 630
Query: 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725
HS K AT+Q ++ +P + RIE AGHG G P K+I+++AD Y F
Sbjct: 631 AHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYE 683
Query: 726 LG 727
+G
Sbjct: 684 MG 685
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/717 (39%), Positives = 401/717 (55%), Gaps = 51/717 (7%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E V D Y G + DPYRWLED + E + +V+ Q +T L R +
Sbjct: 10 LHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAI 68
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+EK+ ++ + APF+ G +++F N GLQ Q+VL+ Q A+V LDPNTLS DG
Sbjct: 69 KEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDG 127
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK 190
T AL ++S S D + LAY+LS +GSDW I L +E + L KFS I+W + +
Sbjct: 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLETPLKDVKFSGISWLGN-E 186
Query: 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK--DPEHPKYIFSG 248
GFFYS Y P +G ++ A T+ H+ Y+H LGT Q +D L + +H +Y+
Sbjct: 187 GFFYSSYDKP-DGSELSARTDQ-----HKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-GA 239
Query: 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 308
VTED ++L++ N N++Y DLS P + + DA +
Sbjct: 240 TVTEDDRFLLISAA-NSTSGNRLYVKDLSQENA------------PLLTVQGDLDADVSL 286
Query: 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVS 366
+ N + LTN+DAP +++ VD P W ++IPE ++ VL + +
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTVHSGSGY--LFAE 343
Query: 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426
Y D ++ D + + +GSV+ + + +D ++ F ++ P +Y+
Sbjct: 344 YXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403
Query: 427 KTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY 486
K+ + ++R + P F ++ Q F SKDG T++P+ I +K +KLDGS+P +LY
Sbjct: 404 KSGA--ISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKGLKLDGSNPTILY 459
Query: 487 GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546
GYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G KQN FDDFI
Sbjct: 460 GYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFI 518
Query: 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606
+A+EYL + GYT++ +L I GGSNGGLLVGA QRPDL AL VGV+D LRYH FT
Sbjct: 519 AAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTA 578
Query: 607 GHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665
G W D+G S + E F +L YSPLHNVR YPST + TADHDDRVVP
Sbjct: 579 GTGWAYDYGTSADSEAXFDYLKGYSPLHNVR--------PGVSYPSTXVTTADHDDRVVP 630
Query: 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722
HS K AT+Q ++ +P + RIE AGHG G P K+I+++AD Y F
Sbjct: 631 AHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFT 680
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/717 (39%), Positives = 401/717 (55%), Gaps = 51/717 (7%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E V D Y G + DPYRWLED + E + +V+ Q +T L R +
Sbjct: 10 LHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAI 68
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+EK+ ++ + APF+ G +++F N GLQ Q+VL+ Q A+V LDPNTLS DG
Sbjct: 69 KEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDG 127
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK 190
T AL ++S S D + LAY+LS +GSDW I L +E + L KFS I+W ++
Sbjct: 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLETPLKDVKFSGISWL-GNE 186
Query: 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK--DPEHPKYIFSG 248
GFFYS Y P +G ++ A T+ H+ Y+H LGT Q +D L + +H +Y+
Sbjct: 187 GFFYSSYDKP-DGSELSARTDQ-----HKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-GA 239
Query: 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 308
VTED ++L++ N N++Y DLS P + + DA +
Sbjct: 240 TVTEDDRFLLISAA-NSTSGNRLYVKDLSQENA------------PLLTVQGDLDADVSL 286
Query: 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVS 366
+ N + LTN+DAP +++ VD P W ++IPE ++ VL + +
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTVHSGSGY--LFAE 343
Query: 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426
Y D ++ D + + +GSV+ + + +D ++ F ++ P +Y+
Sbjct: 344 YXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403
Query: 427 KTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY 486
K+ + ++R + P F ++ Q F SKDG T++P+ I +K +KLDGS+P +LY
Sbjct: 404 KSGA--ISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKGLKLDGSNPTILY 459
Query: 487 GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546
GYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G KQN FDDFI
Sbjct: 460 GYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFI 518
Query: 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606
+A+EYL + GYT++ +L I GGSNGGLLVGA QRPDL AL VGV+D LRYH FT
Sbjct: 519 AAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTA 578
Query: 607 GHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665
G W D+G S + E F +L YSPLHNVR YPST + TADHDDRVVP
Sbjct: 579 GTGWAYDYGTSADSEAXFDYLKGYSPLHNVR--------PGVSYPSTXVTTADHDDRVVP 630
Query: 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722
HS K AT+Q ++ +P + RIE AGHG G P K+I+++AD Y F
Sbjct: 631 AHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFT 680
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 295/735 (40%), Positives = 387/735 (52%), Gaps = 58/735 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLE---DPDAEEVKDFVQKQVELT 57
M SL S Q P+ V+D+ G K+ DP+RWLE DA+ V +VQ Q T
Sbjct: 34 MPSLPPYPASPQVPL-------VEDHFGEKVSDPWRWLEADVRTDAK-VAAWVQAQSAYT 85
Query: 58 DSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDS---LD 114
+ LK R L +++ L D R+ P +RG FY N+GL QS L V+ + +
Sbjct: 86 AAYLKQLPERAALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVG 145
Query: 115 AKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA 174
K +VLLDPNT + DG AL + S+D + LAY++ GSDW T+K + + D AD
Sbjct: 146 TKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE 205
Query: 175 LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 234
L W KFS +AW + YSR+ PKEG+ A N + H LGT QS D
Sbjct: 206 LKWVKFSGLAWLGND-ALLYSRFAEPKEGQAFQA-----LNYNQTVWLHRLGTPQSADQP 259
Query: 235 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294
+ PE PK V+ DG+++V+ E DPVN V+ ++ G P
Sbjct: 260 VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-----------P 308
Query: 295 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLES 354
LI AQ++ + F++ AP KI+RVDL F+ + +D LES
Sbjct: 309 VTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES 368
Query: 355 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414
+ N++ SY+ D K + DL IGS + +S R D ++SF+S
Sbjct: 369 -VGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS 427
Query: 415 FLIPGIVYQCNLKTE--TPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSK 472
F P V + T TP E + FD ++F V QVF PSKDG TK+PMFIV +
Sbjct: 428 FTQPATVLALDPATAKTTPW-----EPVHLTFDPADFRVEQVFYPSKDG-TKVPMFIVRR 481
Query: 473 KNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 532
K+ K G P LLYGYGGFN+++TP FS + GA F +AN+RGGGEYG+ WH
Sbjct: 482 KDAK--GPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGA-FALANLRGGGEYGDAWHDA 538
Query: 533 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592
G KKQN FDDFI+A E+LI+ G T L IEGGSNGGLL+GA NQRPDLF A
Sbjct: 539 GRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPA 598
Query: 593 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPST 652
VGVMDMLR+ +FT G WV D+G E+E ++ L +YSP HNVR YP+
Sbjct: 599 VGVMDMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVR--------SGVDYPAI 650
Query: 653 LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMI 712
L+ TAD DDRVVP HS K A +Q P + RIE +AGHG G P K I
Sbjct: 651 LVTTADTDDRVVPGHSFKYTAALQTAAIGP-------KPHLIRIETRAGHGSGKPIDKQI 703
Query: 713 DEAADRYGFMAKMLG 727
+E AD F+A G
Sbjct: 704 EETADVQAFLAHFTG 718
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/723 (36%), Positives = 389/723 (53%), Gaps = 55/723 (7%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
+ YP A R E VVD HGV++ DPYRWLED A EV+ ++ Q L R+ L
Sbjct: 1 MSYP-ATRAEQVVDTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREAL 59
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+ +LF + P +R ++FY + +++LY + + KVLLDPN S DG
Sbjct: 60 AARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG 119
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWFKFSSIAWTHDS 189
T +L +VS D K +A+A + +D A + ++ ++ + + D + K+++ WT DS
Sbjct: 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS 179
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNL-YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG 248
KGF+Y P D + D Y YH LGT+ S+D + + P
Sbjct: 180 KGFYYEWLP-------TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232
Query: 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 308
++ DG+YL + I N VY+ KR G F L+ G A+YEV
Sbjct: 233 DLSRDGKYLFVYILRGWSE-NDVYW--------------KRPGEKDFRLLVKGVGAKYEV 277
Query: 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVS 366
A D F LT++ AP+ ++ VD +P W E++PE L S + V + +
Sbjct: 278 HAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVG-GHLSLE 335
Query: 367 YLSDVKYVLQIRDLKNGSLLH-QLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425
YL D +++ LK + QLP + N + D ++ FTSF P +Y+ +
Sbjct: 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYV-FTSFTTPRQIYKTS 394
Query: 426 LKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLL 485
+ T E+ + + +P + ++ V QVF SKDG TK+PMF+V +K++K DG+ P LL
Sbjct: 395 VSTGKSEL--WAKVDVP-MNPEQYQVEQVFYASKDG-TKVPMFVVHRKDLKRDGNAPTLL 450
Query: 486 YGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 545
YGYGGFN+++ +F S + G V+ +AN+RGGGEYG+ WH G L KKQN FDDF
Sbjct: 451 YGYGGFNVNMEANFR-SSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDF 509
Query: 546 ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT 605
+A+EYL+ YTQ ++L I GGSNGGLLVGA + QRP+L+G + V ++DM+RYH F
Sbjct: 510 HAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFG 569
Query: 606 IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665
G W+ ++G +E+ E+F L YSP H+VR PD +YP+ L++ ADHDDRV P
Sbjct: 570 SGRTWIPEYGTAEKPEDFKTLHAYSPYHHVR------PD--VRYPALLMMAADHDDRVDP 621
Query: 666 LHSLKLLATMQYVLCTSLENSPQTNPIIG--RIERKAGHGVGLPTQKMIDEAADRYGFMA 723
+H+ K +A +Q NSP NP RIE AGHG K I+ + D Y F+
Sbjct: 622 MHARKFVAAVQ--------NSP-GNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLF 672
Query: 724 KML 726
++L
Sbjct: 673 QVL 675
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 176/340 (51%), Gaps = 25/340 (7%)
Query: 388 QLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRS 447
+LP + ++ +S+ E+ I+ + ++P +Y L +T E+KI R+ + FD
Sbjct: 391 KLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIY---LWVKTHELKIIRKALY-SFDSE 445
Query: 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILM 507
+ + Q S DG KIP F+V KK IK DG +P LL YGGF + P FS + +
Sbjct: 446 NYVLEQKEATSFDG-VKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVW 504
Query: 508 RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEG 567
V +ANIRGGGE+G EWHK K+Q F+DF + SE LI T L I+G
Sbjct: 505 VKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKG 564
Query: 568 GSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI 627
GSNGGLLV + QRP+LFG V ++DM+RY +F GH+WV+++G E + +
Sbjct: 565 GSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIK 624
Query: 628 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 687
KY+PL N+ +YP+ L+ + D RV P H +YVL +P
Sbjct: 625 KYAPLENLSLTQ--------KYPTVLITDSVLDQRVHPWHG----RIFEYVLA----QNP 668
Query: 688 QTNPIIGRIERK-AGHGVGLPTQKMIDEAADRYGFMAKML 726
T +E K +GHG G ++ + + Y F A L
Sbjct: 669 NTKTYF--LESKDSGHGSGSDLKESANYFINLYTFFANAL 706
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 189/737 (25%), Positives = 335/737 (45%), Gaps = 98/737 (13%)
Query: 33 DPYRWLEDPDAEE---VKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKR 89
DPY W+ D D ++ ++ +++V +RD + + + AP+
Sbjct: 66 DPYFWMRDDDRKDPAVIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYVY 125
Query: 90 GNKYFYFHNTGLQPQSVLYVQDSLD------AKAKVLLDPNTLSDDGTAALIKVSVSE-- 141
G +Y +P + Y + D A +V++D N +++ G A + V
Sbjct: 126 GKYRYYTREVKGKPYKI-YCRVFTDKEPGDVAAEEVIIDVNQVAE-GKAFCDVMEVKPAP 183
Query: 142 -DAKYLAYALSYSGSDWATIKLMRIED--QIVEADALSWFKFSSIAWTHDSKGFFYSRYP 198
+ +A+++ SG++ TI+ RI D Q + AD +S I W D FY
Sbjct: 184 PEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVSGTN-GEIVWGPDHTSLFYV--- 238
Query: 199 APKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 258
T+ ++ ++ + H +G QSED+ C + +P +FS + +
Sbjct: 239 -----------TKDETLRENKVWRHVMGKLQSEDV-CLYEEHNP--LFSAFMYKAADTNT 284
Query: 259 MCIEENCDPVNKVYYCDLSA--LPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 316
+CI +V+ DL LE + R+ +Y+V + +
Sbjct: 285 LCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK-----------GVRYDVQMHGTSHL 333
Query: 317 TFLTNKD-APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY----LSDV 371
LTN+ A +K++ +P+DW V+ + DV + AV N ++V+ L+ +
Sbjct: 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRI 393
Query: 372 KYVL---QIRDLKNGSLLHQLPIE--IGSVNAISARR---EDSVVFISFTSFLIPGIVYQ 423
++ Q K G+ L ++ +E I +V+ + ++ E+ + ++S P +
Sbjct: 394 WTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFD 453
Query: 424 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC 483
+ + + RE + GFD + + V + F + D TKIP+ +V K++ + PC
Sbjct: 454 VSPQDHSRTAVKVRE-VGGGFDAANYKVERRFATAPD-QTKIPLSVVYHKDLDMSQPQPC 511
Query: 484 LLYGYGGFNISVTPSFSVSRTILMRHL-----GAVFCIANIRGGGEYGEEWHKGGA-LAK 537
+LYGYG + +S+ P FS+ +HL G +F IA+IRGG E G W++ GA
Sbjct: 512 MLYGYGSYGLSMDPQFSI------QHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLT 565
Query: 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597
K+N F DFI+A+E+L++A T +L EG S GGLL+GA +N RPDLF ALA V +D
Sbjct: 566 KRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVD 625
Query: 598 MLRYH-----KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPST 652
++ T G W ++G E + + +++ YSP+ NVR +YP+
Sbjct: 626 VMTTMCDPSIPLTTGE-W-EEWGNPNEYKYYDYMLSYSPMDNVRAQ---------EYPNI 674
Query: 653 LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMI 712
++ HD RV K ++ ++ E N I+ I+ ++GH K
Sbjct: 675 MVQCGLHDPRVAYWEPAKWVSKLR-------ECKTDNNEILLNIDMESGHFSAKDRYKFW 727
Query: 713 DEAADRYGFMAKMLGAS 729
E+A + F+ K L ++
Sbjct: 728 KESAIQQAFVCKHLKST 744
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFS-----VSRTILMRHLG 511
+ DG T + ++ +P +Y YGG + +VT S+ + L +
Sbjct: 494 AADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGY 553
Query: 512 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFD--DFISASEYLISAGYTQSRKLCIEGGS 569
VF + N RG G ++ GGAL KQ + D + +L + ++ ++G S
Sbjct: 554 VVFSLDN-RGTPRRGRDF--GGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWS 610
Query: 570 NGGLLVGACINQRPDLFGCALAHVGVMD 597
NGG + + + D + C +A V D
Sbjct: 611 NGGYMTLMLLAKASDSYACGVAGAPVTD 638
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 466 PMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVSR-TILMRHLGAVFCIANIRGGG 523
P F SKK +P L+ YGG + SV F+V+ + L G V + + RG
Sbjct: 488 PQFDRSKK-------YPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTA 540
Query: 524 EYGEEWHKGGALAKKQNCFD--DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581
G++ A+ +K ++ D I+A I G+ +++ I G S GG + +
Sbjct: 541 FQGDKLLY--AVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALAS 598
Query: 582 RPDLFGCALA 591
LF C +A
Sbjct: 599 GTGLFKCGIA 608
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 503
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 385
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 564 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597
I G S GG + + +P LF +A V+D
Sbjct: 440 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 503
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 385
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 564 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597
I G S GG + + +P LF +A V+D
Sbjct: 440 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 503
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 385
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 564 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597
I G S GG + + +P LF +A V+D
Sbjct: 440 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 503
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 308 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 365
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 366 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 419
Query: 564 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597
I G S GG + + +P LF +A V+D
Sbjct: 420 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 453
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 503
RS V+V S DGS ++P +++ G L++G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDSWDTFAASL 385
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 564 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597
I G + GG + + +P LF +A V+D
Sbjct: 440 YIMGYAYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 10/154 (6%)
Query: 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSR 503
RS V+V S DGS ++P +++ G L+ G G F + +F+ S
Sbjct: 328 RSIAGSRLVWVESFDGS-RVPTYVLESGRAPTPGPTVVLVAG-GPFAEDSDSWDTFAASL 385
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563
H+ + N RG YGEEW +D +A+ + +G +L
Sbjct: 386 AAAGFHV----VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--EL 439
Query: 564 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597
I G S GG + + +P LF +A V+D
Sbjct: 440 YIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 444 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 503
+ + F + P D S K P+ I PC F ++ + +
Sbjct: 483 LNETRFWYQMILPPHFDKSKKYPLLIDVYAG-------PCSQKADAAFRLNWATYLASTE 535
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD--DFISASEYLISAGYTQSR 561
I++ RG G G++ A+ K+ + D I A+ + G+ S+
Sbjct: 536 NIIVASFDG-------RGSGYQGDK--IMHAINKRLGTLEVEDQIEAARQFLKMGFVDSK 586
Query: 562 KLCIEGGSNGGLLVGACINQRPDLFGCALA 591
++ I G S GG + + +F C +A
Sbjct: 587 RVAIWGWSYGGYVTSMVLGSGSGVFKCGIA 616
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 4/150 (2%)
Query: 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRT---ILMRHLG 511
+ + DG T + + + +P ++Y YGG + VT ++ S I M G
Sbjct: 460 IMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKG 519
Query: 512 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 571
+ RG G + + Q D + ++L S + + ++ + G S G
Sbjct: 520 YAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYG 579
Query: 572 GLLVGACINQRPDLFGCALAHVGVMDMLRY 601
G + + D+F +A V+D RY
Sbjct: 580 GFMTTNLMLTHGDVFKVGVAGGPVIDWNRY 609
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 4/150 (2%)
Query: 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRT---ILMRHLG 511
+ + DG T + + + +P ++Y YGG + VT ++ S I M G
Sbjct: 460 IMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKG 519
Query: 512 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 571
+ RG G + + Q D + ++L S + + ++ + G S G
Sbjct: 520 YAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYG 579
Query: 572 GLLVGACINQRPDLFGCALAHVGVMDMLRY 601
G + + D+F +A V+D RY
Sbjct: 580 GFMTTNLMLTHGDVFKVGVAGGPVIDWNRY 609
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 4/150 (2%)
Query: 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRT---ILMRHLG 511
+ + DG T + + + +P ++Y YGG + VT ++ S I M G
Sbjct: 460 IMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKG 519
Query: 512 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 571
+ RG G + + Q D + ++L S + + ++ + G + G
Sbjct: 520 YAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWAYG 579
Query: 572 GLLVGACINQRPDLFGCALAHVGVMDMLRY 601
G + + D+F +A V+D RY
Sbjct: 580 GFMTTNLMLTHGDVFKVGVAGGPVIDWNRY 609
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 94 FYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS 153
F H TG P + + +D+ + + + + T ++KV+ + +Y YA + +
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 154 GSDWATIKL 162
G D + +L
Sbjct: 85 GKDSCSAQL 93
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 94 FYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS 153
F H TG P + + +D+ + + + + T ++KV+ + +Y YA + +
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 154 GSDWATIKL 162
G D + +L
Sbjct: 85 GKDSCSAQL 93
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 94 FYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS 153
F H TG P + + +D+ + + + + T ++KV+ + +Y YA + +
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 154 GSDWATIKL 162
G D + +L
Sbjct: 277 GKDSCSAQL 285
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 144 KYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK--GFFYSRYPAPK 201
K +AYA+ S W E+ F +S A+ +K G F+ + + +
Sbjct: 331 KVIAYAIQNSKIKWQ------------ESGKKDMFLSTSEAFYMATKKGGSFFGKVGSFE 378
Query: 202 EGKDMDAGTETDSNLYHEFY 221
EG D DA DSNLY E Y
Sbjct: 379 EGYDFDALVINDSNLYPEDY 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,788,085
Number of Sequences: 62578
Number of extensions: 1079630
Number of successful extensions: 2641
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2481
Number of HSP's gapped (non-prelim): 38
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)