Query 004767
Match_columns 732
No_of_seqs 252 out of 721
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 3E-119 1E-123 1008.6 47.8 484 7-494 18-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 7E-115 2E-119 976.3 50.3 476 6-488 4-527 (530)
3 2ikf_A RNA uridylyl transferas 100.0 1.7E-50 6E-55 434.1 18.7 288 1-338 1-348 (353)
4 4fh3_A Poly(A) RNA polymerase 100.0 1.7E-49 6E-54 422.9 24.8 279 28-356 13-348 (349)
5 4e8f_A Poly(A) RNA polymerase 100.0 6E-48 2.1E-52 422.1 26.3 302 8-363 25-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 9.7E-48 3.3E-52 408.9 22.7 265 26-341 20-299 (323)
7 2b4v_A RNA editing complex pro 100.0 3.5E-39 1.2E-43 358.3 22.9 302 19-342 11-441 (468)
8 3hj4_A Minor editosome-associa 100.0 8E-37 2.7E-41 331.0 23.9 281 25-357 5-380 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 1.7E-35 5.7E-40 327.8 26.2 234 28-340 135-437 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 5.8E-10 2E-14 123.1 24.1 333 30-454 6-360 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 9.7E-09 3.3E-13 109.9 25.9 273 29-330 9-322 (349)
12 4at7_A Interleukin enhancer-bi 98.0 0.001 3.5E-08 71.8 23.0 268 19-338 19-295 (364)
13 4at7_B NF90, interleukin enhan 97.1 0.046 1.6E-06 59.5 21.2 265 38-338 21-327 (383)
14 1no5_A Hypothetical protein HI 97.0 0.002 6.7E-08 58.3 8.7 44 84-129 28-71 (114)
15 2rff_A Putative nucleotidyltra 96.9 0.0012 4.1E-08 59.9 6.2 53 48-112 10-62 (111)
16 1wot_A Putative minimal nucleo 96.9 0.0012 4.1E-08 58.3 5.6 49 52-113 7-55 (98)
17 1ylq_A Putative nucleotidyltra 96.4 0.006 2.1E-07 53.6 7.0 28 84-111 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.1 0.049 1.7E-06 56.5 5.4 54 46-111 15-68 (272)
19 1kny_A Kntase, kanamycin nucle 93.8 0.068 2.3E-06 54.6 6.0 29 84-112 32-60 (253)
20 2fmp_A DNA polymerase beta; nu 93.5 0.42 1.4E-05 51.1 11.6 81 82-163 171-262 (335)
21 2bcq_A DNA polymerase lambda; 91.9 0.63 2.1E-05 49.8 10.2 116 82-233 168-292 (335)
22 3jz0_A Lincosamide nucleotidyl 90.0 1 3.4E-05 47.4 9.4 104 38-164 12-116 (287)
23 1jaj_A DNA polymerase beta-lik 90.0 0.34 1.1E-05 47.5 5.4 78 76-163 24-106 (174)
24 2ihm_A POL MU, DNA polymerase 87.7 1.9 6.6E-05 46.4 9.9 51 82-134 175-225 (360)
25 1jms_A Terminal deoxynucleotid 82.5 6.2 0.00021 42.9 10.9 53 82-135 195-248 (381)
26 3b0x_A DNA polymerase beta fam 79.8 9 0.00031 43.5 11.4 107 83-234 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 66.7 7.5 0.00026 42.9 6.4 48 82-129 153-208 (440)
28 2pbe_A AAD6, aminoglycoside 6- 54.0 16 0.00055 38.1 5.9 75 85-164 25-110 (294)
29 3k7d_A Glutamate-ammonia-ligas 53.5 25 0.00086 39.5 7.7 48 82-129 233-289 (498)
30 2fcl_A Hypothetical protein TM 51.1 45 0.0015 32.0 8.1 71 82-161 32-107 (169)
31 2w9m_A Polymerase X; SAXS, DNA 34.7 55 0.0019 37.2 6.8 94 86-234 182-276 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=3e-119 Score=1008.58 Aligned_cols=484 Identities=45% Similarity=0.808 Sum_probs=451.0
Q ss_pred ccccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEE
Q 004767 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKI 86 (732)
Q Consensus 7 ~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI 86 (732)
++||||+|||+++||++|++++.+|+++|++++++||+||.++|++|+++|+++|++|+++++.++|++++++.+++++|
T Consensus 18 ~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v 97 (514)
T 1q79_A 18 KHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKI 97 (514)
T ss_dssp -CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEE
T ss_pred cccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeecccc
Q 004767 87 FTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLW 166 (732)
Q Consensus 87 ~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~ 166 (732)
++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+||+++..
T Consensus 98 ~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~ 176 (514)
T 1q79_A 98 FTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQ 176 (514)
T ss_dssp EEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCS
T ss_pred EEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEEEecCCcc
Confidence 999999999999999999999999999984 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHH
Q 004767 167 VIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246 (732)
Q Consensus 167 ~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~v 246 (732)
.+|+++++.++++|+++|+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||++
T Consensus 177 ~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~ 256 (514)
T 1q79_A 177 TIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256 (514)
T ss_dssp SBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHH
T ss_pred cCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHhccCCCCCceeecccccCCCCccccCCCCCCCCCCCceeEeCCCCCCCCcccccChhhHHH
Q 004767 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRI 326 (732)
Q Consensus 247 cQlyPnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~G~l~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~v 326 (732)
||+||++++++||.+||++|++|+|++||+++.+++|.+++++|+|+.+++|++|+|||+||++|++|+|+||+.+|+++
T Consensus 257 ~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~ 336 (514)
T 1q79_A 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMV 336 (514)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhccceEEEEeeecChhhhhhhhhHHHHHHHHHHHHHhhcccccee
Q 004767 327 MMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQ 406 (732)
Q Consensus 327 I~~EF~RA~~Il~~i~~~~~~~~W~~Lfep~~Ff~~Yk~yL~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ 406 (732)
|++||+||+++|+++..++. +|++||++++||.+|++||+|+|++.+++++.+|.||||||||.|+.+||+. ..+..
T Consensus 337 I~~Ef~rA~~il~~i~~~~~--~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~-~~i~~ 413 (514)
T 1q79_A 337 MVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITL 413 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS-TTEEE
T ss_pred HHHHHHHHHHHHHHHhcCCC--CHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccC-CCcee
Confidence 99999999999999998887 9999999999999999999999999999999999999999999999999985 34556
Q ss_pred eccCCCCCCCCC-----CCceEEEEEeeEecC---CCCCCCCcccchHHHHHHHHHHHHhhccCCCCcEEEEEEecCCCC
Q 004767 407 CHPHPGDFSDKS-----KPLYCSYFMGLQRKQ---GVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNL 478 (732)
Q Consensus 407 ~hp~P~~f~~~~-----~~~~~~ffIGL~~~~---~~~~~~~~~~Dl~~~v~eF~~~v~~~~~~~~~m~i~v~~vkr~~L 478 (732)
|||||++|.+.. ..|+++|||||+++. ......+.++||+.++++|++.|++|..|+++|+|+|+|||+++|
T Consensus 414 a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~L 493 (514)
T 1q79_A 414 AHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQL 493 (514)
T ss_dssp EEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHH
T ss_pred eecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHC
Confidence 999999997653 358899999999865 222234567999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCC
Q 004767 479 PNFVFPGGVRPSRPSK 494 (732)
Q Consensus 479 P~~v~~~~~~~~~~~~ 494 (732)
|++||+++.+++|+..
T Consensus 494 p~~v~~~~~~~~~~~~ 509 (514)
T 1q79_A 494 HQLLPSHVLQKKKKHS 509 (514)
T ss_dssp GGGCC-----------
T ss_pred chhhcchhccCCCCCC
Confidence 9999999998887644
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=6.8e-115 Score=976.34 Aligned_cols=476 Identities=41% Similarity=0.756 Sum_probs=452.0
Q ss_pred CccccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcE
Q 004767 6 GQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAK 85 (732)
Q Consensus 6 ~~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~k 85 (732)
.++||||+|||+++||++|++.+.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++++++++++++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~ 83 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 83 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCE
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCce
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccc
Q 004767 86 IFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 165 (732)
Q Consensus 86 I~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 165 (732)
|++||||++|+|+|+||||++|++|.++++ ++||..++++|++.++++++++|++|+||||||+++||+|||+|++++.
T Consensus 84 V~~FGSy~lG~~~p~SDID~~v~~p~~~~~-~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTR-EDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEHHHHHTCCCTTCCEEEEEEECTTCCH-HHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred EEEecccccCCCCCCCceeEEEecCCcCCH-HHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 999999999999999999999999999998 4999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHH
Q 004767 166 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 245 (732)
Q Consensus 166 ~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~ 245 (732)
.++|+++++.++++|+++|+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHhccCCCCCceeecccccCCCCccccCCCCCCCCCCCceeEeCCCCCCCCcccccChhhHH
Q 004767 246 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 325 (732)
Q Consensus 246 vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~G~l~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~ 325 (732)
+||+||++++++||.+||++|++|+|++||+++++++|.++.++|+|+.|.+|+.|+|||+||++|++|+|+||+.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999999889888999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhccceEEEEeeec-ChhhhhhhhhHHHHHHHHHHHHHhhccccc
Q 004767 326 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAE-NADDLRNWKGWVESRLRQLTLKIERHTYNM 404 (732)
Q Consensus 326 vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep~~Ff~~Yk~yL~I~v~a~-~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~ 404 (732)
+|++||+||+++|+++..++. +|.+||++++||.+|+|||+|+++++ +++++.+|.||||||+|.|+.+||+ .+++
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~--~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i 399 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGI 399 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTE
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCc
Confidence 999999999999999988777 99999999999999999999999998 9999999999999999999999998 4567
Q ss_pred eeeccCCCCCCCC--------------------------------------------CCCceEEEEEeeEecCCCCCCCC
Q 004767 405 LQCHPHPGDFSDK--------------------------------------------SKPLYCSYFMGLQRKQGVPVGEG 440 (732)
Q Consensus 405 l~~hp~P~~f~~~--------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~ 440 (732)
..|||||+.|.+. ...|+++|||||+++.. ..+
T Consensus 400 ~~a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~ 476 (530)
T 2hhp_A 400 KIAHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKK 476 (530)
T ss_dssp EEEEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------C
T ss_pred eeeecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCC
Confidence 7899999998421 12367899999998743 235
Q ss_pred cccchHHHHHHHHHHHHhhcc-CCCC-cE-EEEEEecCCCCCCccCCCCCC
Q 004767 441 EQFDIRLTVKEFKQAVSMYTL-RKPG-MQ-ISVAHVTRRNLPNFVFPGGVR 488 (732)
Q Consensus 441 ~~~Dl~~~v~eF~~~v~~~~~-~~~~-m~-i~v~~vkr~~LP~~v~~~~~~ 488 (732)
+++||+.++++|++.|++|.. |+++ |+ |.|+|||+++||+|||++|++
T Consensus 477 ~~~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~ 527 (530)
T 2hhp_A 477 EKVDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEK 527 (530)
T ss_dssp CCCCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSC
T ss_pred ceEeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCc
Confidence 689999999999999999998 8887 78 999999999999999997753
No 3
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.7e-50 Score=434.13 Aligned_cols=288 Identities=18% Similarity=0.257 Sum_probs=225.1
Q ss_pred CCCCCC---ccccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 004767 1 MGSSNG---QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQ 77 (732)
Q Consensus 1 ~~~~~~---~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~ 77 (732)
|||+.- ..-|++++++.++|+++++ +++|++++++ .+++.+|.+.|++++++|++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~------------- 63 (353)
T 2ikf_A 1 MGSSHHHHHHSSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAV------------- 63 (353)
T ss_dssp ----------------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHH-------------
T ss_pred CCCccccccccccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHH-------------
Confidence 677544 3459999999999999987 7899999986 5588899999999999999999863
Q ss_pred hhhccCcEEEEeeeee-cCCCCCCCCceEEeecCCCCC------------c--hhhHHHHHHHHHhcCCCceeeEeecCC
Q 004767 78 LLQEANAKIFTFGSYR-LGVHGPGADIDTLCVGPRHAT------------R--EEDFFGELHQMLTEMPEVTELHPVPDA 142 (732)
Q Consensus 78 ~~~~~~~kI~~FGSy~-lGv~~p~SDID~lcv~P~~v~------------r--~~dFf~~l~~~L~~~~~V~~l~~I~~A 142 (732)
.++++|++||||+ +|+++|+||||++|+.|..+. + ..+++..+++.|++...+.+++.|.+|
T Consensus 64 ---~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~A 140 (353)
T 2ikf_A 64 ---DPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRT 140 (353)
T ss_dssp ---CTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred ---CCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEeccc
Confidence 2468999999997 999999999999998774221 0 136888899999987778899999999
Q ss_pred cccEEEEEe-cCeeeeEEeeeccccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHH
Q 004767 143 HVPVMKFKF-SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWA 221 (732)
Q Consensus 143 rVPIIKf~~-~GI~iDLsfa~l~~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WA 221 (732)
+||||||++ .||+|||+|++. +|++.++.|..++..+++||.++++||+||
T Consensus 141 rVPIiK~~~~~~i~~Dis~~n~----------------------------~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa 192 (353)
T 2ikf_A 141 RVPVVRVKGGGAVDFDITAYRR----------------------------NGVRNSALLRAYFEQNPPCRWLSMSIKRWS 192 (353)
T ss_dssp SSCEEEEECSSSCEEEEEESCC----------------------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCcEEEEEecCc----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 999999999 689999999764 588999999999999999999999999999
Q ss_pred HHcCCCCCCC-CCcChHHHHHHHHHHHHhC------C------------------------CCCHHHHHHHHHHHhc-cC
Q 004767 222 KRRGVYSNVA-GFLGGINWALLVARICQLY------P------------------------NAVPSMLVSRFFRVYT-QW 269 (732)
Q Consensus 222 K~RgIysn~~-G~LGG~swalLVa~vcQly------P------------------------nas~~~LL~~FF~~Ys-~w 269 (732)
|+||||++.. |+||||+|+|||+++||.. | +.++++||.+||+||+ +|
T Consensus 193 ~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~f 272 (353)
T 2ikf_A 193 KQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEF 272 (353)
T ss_dssp HHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhcccc
Confidence 9999999999 9999999999999999852 3 2357999999999999 89
Q ss_pred CCCCceeecccccCC-CC--ccccCCC------CCCCCCCCceeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHH
Q 004767 270 RWPNPVLLCAIEEGS-LG--LQVWDPR------RNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEIC 338 (732)
Q Consensus 270 dW~~pV~l~~i~~G~-l~--~~vWdP~------~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il 338 (732)
||.++++. ++.|. +. .+.|+++ .++.++.+.|+|+||++|.+|+|++|+..++..|++||+||++++
T Consensus 273 d~~~~vIs--i~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 273 DSDKQVIS--LNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp CTTTEEEC--SSSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred CcCceEEE--cCCCcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999864 33332 21 2468642 122345678999999999999999999999999999999999975
No 4
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=1.7e-49 Score=422.92 Aligned_cols=279 Identities=20% Similarity=0.275 Sum_probs=225.2
Q ss_pred hHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceE
Q 004767 28 TRKLEKYLRDV--NLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDT 105 (732)
Q Consensus 28 t~eL~~~L~~~--~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~ 105 (732)
+++|.+++.+. .+-||++|.++|++++++|+++|+++. ++++|++||||++|+++|+||||+
T Consensus 13 ~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 76 (349)
T 4fh3_A 13 HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDL 76 (349)
T ss_dssp CHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEE
Confidence 44566665431 356999999999999999999998632 368999999999999999999999
Q ss_pred EeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEec-------CeeeeEEeeeccccccCCCCCCCchh
Q 004767 106 LCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFS-------GVSIDLLYARLSLWVIPEDLDISQDS 178 (732)
Q Consensus 106 lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~-------GI~iDLsfa~l~~~~ip~~ldl~~~~ 178 (732)
+|+.|.....+ .++..+...+.+ ...+++.|.+|+||||||.+. |+.||++|++.
T Consensus 77 ~v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~--------------- 138 (349)
T 4fh3_A 77 CVLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR--------------- 138 (349)
T ss_dssp EEECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCH---------------
T ss_pred EEecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCcc---------------
Confidence 99999887764 666666555543 345778899999999999973 78999998763
Q ss_pred hhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHh------CCC
Q 004767 179 ILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL------YPN 252 (732)
Q Consensus 179 lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vcQl------yPn 252 (732)
+|+|+++.|.++++.+++||.++++||+|||+||||++..|+||||+|+|||+++||. +|+
T Consensus 139 -------------~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~ 205 (349)
T 4fh3_A 139 -------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPN 205 (349)
T ss_dssp -------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCC
T ss_pred -------------hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCch
Confidence 5899999999999999999999999999999999999999999999999999999995 232
Q ss_pred --------------------------------CCHHHHHHHHHHHhc-cCCCCCceeecccccCCCC--cccc-------
Q 004767 253 --------------------------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSLG--LQVW------- 290 (732)
Q Consensus 253 --------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~G~l~--~~vW------- 290 (732)
.++++||.+||+||+ +|||++.|+......+.+. .+.|
T Consensus 206 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~ 285 (349)
T 4fh3_A 206 LLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHT 285 (349)
T ss_dssp SSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------
T ss_pred hhhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhccccccccc
Confidence 368999999999999 7999999875433333221 1234
Q ss_pred CCCCCCCCCCCceeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCC
Q 004767 291 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP 356 (732)
Q Consensus 291 dP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep 356 (732)
++..+..++.+.|+|+||++|++|+|++|+..++..|++||+||+++|++.. .+.+|++||+.
T Consensus 286 ~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~---~~~~~~~lfe~ 348 (349)
T 4fh3_A 286 GSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS---YPIPYDSLFEE 348 (349)
T ss_dssp ---------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS---SSCCGGGGGSC
T ss_pred CcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc---cCCCHHHHhhc
Confidence 3333333445789999999999999999999999999999999999987522 23489999985
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=6e-48 Score=422.11 Aligned_cols=302 Identities=18% Similarity=0.229 Sum_probs=241.1
Q ss_pred cccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEE
Q 004767 8 RLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIF 87 (732)
Q Consensus 8 ~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~ 87 (732)
-.|..++-|.+...+..-+++++|.+++.. +.||++|.++|++++.+|++++++++ ++++|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v~ 86 (405)
T 4e8f_A 25 NLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELV 86 (405)
T ss_dssp -------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEE
T ss_pred cccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEE
Confidence 356677766666666777889999999986 77999999999999999999998753 358999
Q ss_pred EeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEe---c----CeeeeEEe
Q 004767 88 TFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF---S----GVSIDLLY 160 (732)
Q Consensus 88 ~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~---~----GI~iDLsf 160 (732)
+|||+++|+++|+||||++|+.|..... ++++..+++.|++. ..+++.|.+|+||||||.+ + ||+|||+|
T Consensus 87 ~fGS~~~G~~~~~SDiDl~v~~~~~~~~-~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~ 163 (405)
T 4e8f_A 87 AFGSLESGLALKNSDMDLCVLMDSRVQS-DTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGF 163 (405)
T ss_dssp EESHHHHTCCBSSCCEEEEEECCC---C-TTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEE
T ss_pred EEeeccCCCCCCCCCEEEEEEecCCCCH-HHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEee
Confidence 9999999999999999999998876554 36889999999986 6789999999999999995 4 99999999
Q ss_pred eeccccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHH
Q 004767 161 ARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWA 240 (732)
Q Consensus 161 a~l~~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swa 240 (732)
++. +|++.+..|..++...++||.++++||+|||+||||+++.|+||||+|+
T Consensus 164 ~n~----------------------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~ 215 (405)
T 4e8f_A 164 NNR----------------------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYV 215 (405)
T ss_dssp SCH----------------------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHH
T ss_pred ccc----------------------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHH
Confidence 864 4677888888888888999999999999999999999999999999999
Q ss_pred HHHHHHH-Hh-----CCC--------------------------------CCHHHHHHHHHHHhc-cCCCCCceeecccc
Q 004767 241 LLVARIC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIE 281 (732)
Q Consensus 241 lLVa~vc-Ql-----yPn--------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~l~~i~ 281 (732)
|||+++| |. +|+ .++++||..||+||+ +|||.+.|+. ++
T Consensus 216 lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIs--ir 293 (405)
T 4e8f_A 216 LMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVT--FR 293 (405)
T ss_dssp HHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEEC--SS
T ss_pred HHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEE--Ee
Confidence 9999999 73 232 468999999999999 8999998865 33
Q ss_pred -cC-CCC--ccccCCCCC-------CCCCCCceeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 004767 282 -EG-SLG--LQVWDPRRN-------PKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDW 350 (732)
Q Consensus 282 -~G-~l~--~~vWdP~~~-------~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~~~W 350 (732)
.| .+. .+.|....+ ..++.+.|+|+||++|.+|+|++|+..+++.|++||+||+++|+.... +.+|
T Consensus 294 ~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~---~~~w 370 (405)
T 4e8f_A 294 RPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY---PIPY 370 (405)
T ss_dssp STTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS---SCCG
T ss_pred cCCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc---CCCH
Confidence 34 332 257875421 113457899999999999999999999999999999999999875321 2389
Q ss_pred ccccCCcchhhhc
Q 004767 351 DTLFEPFTFFEAY 363 (732)
Q Consensus 351 ~~Lfep~~Ff~~Y 363 (732)
+.||+++++..+.
T Consensus 371 ~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 371 DSLFEEAPIPPRR 383 (405)
T ss_dssp GGGGSCCCCC---
T ss_pred HHHhCcCCCcccc
Confidence 9999999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-48 Score=408.94 Aligned_cols=265 Identities=22% Similarity=0.332 Sum_probs=227.6
Q ss_pred HhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceE
Q 004767 26 MRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDT 105 (732)
Q Consensus 26 ~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~ 105 (732)
.+++||.+++. .+.||++|.++|++++++|++++++++ ++++|++|||+++|+++|+||||+
T Consensus 20 ~L~~Ei~~f~~--~i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 81 (323)
T 3nyb_A 20 WLTFEIKDFVA--YISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDIDC 81 (323)
T ss_dssp HHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCEEE
T ss_pred HHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCceE
Confidence 35556666655 377999999999999999999998742 357899999999999999999999
Q ss_pred EeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEe--cCeeeeEEeeeccccccCCCCCCCchhhhccc
Q 004767 106 LCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLDISQDSILQNA 183 (732)
Q Consensus 106 lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~ip~~ldl~~~~lL~~l 183 (732)
+|+.|.......+++..+++.|++.+.++++++|.+|+||||||.+ .||+|||+|++.
T Consensus 82 ~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~-------------------- 141 (323)
T 3nyb_A 82 VVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERT-------------------- 141 (323)
T ss_dssp EECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCS--------------------
T ss_pred EEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCc--------------------
Confidence 9999876532236889999999998888999999999999999996 799999999763
Q ss_pred hhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHhCCC---------CC
Q 004767 184 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPN---------AV 254 (732)
Q Consensus 184 de~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vcQlyPn---------as 254 (732)
+|+|.++.|.++++..++||.++++||+|||+||||++..|+||||+|+|||+++||++|+ .+
T Consensus 142 --------~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~ 213 (323)
T 3nyb_A 142 --------NGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDN 213 (323)
T ss_dssp --------STTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGC
T ss_pred --------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCcccc
Confidence 6899999999999999999999999999999999999999999999999999999999985 36
Q ss_pred HHHHHHHHHHHhc-cCCCCCceeecccccCC---CCccccCCCCCCCCCCCceeEeCCCCCCCCcccccChhhHHHHHHH
Q 004767 255 PSMLVSRFFRVYT-QWRWPNPVLLCAIEEGS---LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDE 330 (732)
Q Consensus 255 ~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~G~---l~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~E 330 (732)
+++||.+||+||+ +|||++.++. ++.|. ...+.|..- .+..+.+.|+|+||++|++|+++++ ..++.|++|
T Consensus 214 lg~LL~~Ff~~Y~~~Fd~~~~~Is--v~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~ 288 (323)
T 3nyb_A 214 LGVLLIEFFELYGKNFGYDDVALG--SSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKA 288 (323)
T ss_dssp HHHHHHHHHHHHHHTCCTTTEEEE--ESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCcEEE--EecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHH
Confidence 8999999999999 9999998764 44443 233567542 2223467899999999999999985 468899999
Q ss_pred HHHHHHHHHHH
Q 004767 331 FQRGHEICEAM 341 (732)
Q Consensus 331 F~RA~~Il~~i 341 (732)
|++|+++|.+-
T Consensus 289 F~~A~~~L~~~ 299 (323)
T 3nyb_A 289 FAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=3.5e-39 Score=358.28 Aligned_cols=302 Identities=16% Similarity=0.229 Sum_probs=214.6
Q ss_pred CCChHHH-HhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeee-ecCC
Q 004767 19 GPTDDDL-MRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSY-RLGV 96 (732)
Q Consensus 19 ~Pt~~D~-~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy-~lGv 96 (732)
.|++.-+ .....+.+...... +++++.+.|+.++++|+.++++|. .+++|++|||| .+|+
T Consensus 11 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~Gl 72 (468)
T 2b4v_A 11 NPSPDHYAVWGKAIMAENNRRV--GPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQ 72 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHB--CCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcCC
Confidence 3444333 33344555444433 888999999999999999999874 36999999999 7999
Q ss_pred CCCCCCceEEeecCCCCCch-hhHH--HHHHHHHhcC-CC--ceeeEeecCCcccEEEEEec------------------
Q 004767 97 HGPGADIDTLCVGPRHATRE-EDFF--GELHQMLTEM-PE--VTELHPVPDAHVPVMKFKFS------------------ 152 (732)
Q Consensus 97 ~~p~SDID~lcv~P~~v~r~-~dFf--~~l~~~L~~~-~~--V~~l~~I~~ArVPIIKf~~~------------------ 152 (732)
++|+||||++|+.+...... .... .++...|++. ++ +.++++|.+||||||||++.
T Consensus 73 ~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~ 152 (468)
T 2b4v_A 73 MERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEED 152 (468)
T ss_dssp CBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHH
T ss_pred CCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccc
Confidence 99999999999876322111 1111 2478888885 45 57899999999999999831
Q ss_pred ----------------------------------------C--eeeeEEeeecc-----ccccCCCCCCCchh-----hh
Q 004767 153 ----------------------------------------G--VSIDLLYARLS-----LWVIPEDLDISQDS-----IL 180 (732)
Q Consensus 153 ----------------------------------------G--I~iDLsfa~l~-----~~~ip~~ldl~~~~-----lL 180 (732)
| ..+|++|.+.. ....|+. .+.... ..
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~ 231 (468)
T 2b4v_A 153 RKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDG-KIMTRGMREDYTR 231 (468)
T ss_dssp HHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCS-SSSCGGGGGGEEE
T ss_pred cccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccc-ccccccccccccc
Confidence 2 22456766421 0111111 000000 00
Q ss_pred ccch------------hhhhhhcchhhhHHHHHHHcCChhh-HHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHH
Q 004767 181 QNAD------------EQTVRSLNGCRVTDQILRLVPKIQN-FRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC 247 (732)
Q Consensus 181 ~~ld------------e~svrSLNG~Rvtd~IlrlVP~~~~-FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vc 247 (732)
..+| +.|.. .+|++.+..|..++-.+++ ||.|+++||+|||+||||++..|+||||+|+|||++++
T Consensus 232 ~~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fL 310 (468)
T 2b4v_A 232 DVLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYL 310 (468)
T ss_dssp EESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHH
T ss_pred ccccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHH
Confidence 0011 12333 6899999999999888889 99999999999999999999999999999999999999
Q ss_pred HhC-----------------CC------------CCHHHHHHHHHHHhc-cCCCCCceeecccccCCC-C--ccccCCCC
Q 004767 248 QLY-----------------PN------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL-G--LQVWDPRR 294 (732)
Q Consensus 248 Qly-----------------Pn------------as~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~G~l-~--~~vWdP~~ 294 (732)
|.. |+ .++++||.+||+||+ +|||.+.++. ++.|.. . .+.|....
T Consensus 311 Q~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vIS--ir~g~~~~K~~~~w~~~~ 388 (468)
T 2b4v_A 311 LVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVS--LNRNRRSYRSDIGWNFPQ 388 (468)
T ss_dssp HHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBC--SSSSSCEEHHHHTCCCGG
T ss_pred HhcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEE--ecCCcceecccccccccc
Confidence 864 11 158999999999999 9999998763 444432 1 24576421
Q ss_pred CC-CCCCCceeEeCCCCC----CCCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 004767 295 NP-KDKYHLMPIITPAYP----CMNSSYNVSTSTLRIMMDEFQRGHEICEAME 342 (732)
Q Consensus 295 ~~-~dr~hlMpIiTP~~P----~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~ 342 (732)
+. ....+.|+|+||++| .+|+|++|+..+++.|++||++|+++|+...
T Consensus 389 n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 389 NKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp GEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 10 011247999999999 9999999999999999999999999998654
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=8e-37 Score=331.01 Aligned_cols=281 Identities=16% Similarity=0.207 Sum_probs=211.6
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCce
Q 004767 25 LMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADID 104 (732)
Q Consensus 25 ~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID 104 (732)
-++++|+.++.+. +.||++|.+.|.+++.+|++++++. + ++++|++|||+.+|+++|+||||
T Consensus 5 ~~lt~EI~dFy~~--i~PT~eE~~~R~~vv~~l~~ii~~~---------~-------p~~~v~~FGS~~tgl~lp~SDiD 66 (384)
T 3hj4_A 5 REFIRGMMAHYRA--SLPPPEHSVVIHELQKRVLDIGMLA---------V-------NKAHVELFGSHVSGFCTPHSDAD 66 (384)
T ss_dssp HHHHHHHHHHHHH--HSCCTTHHHHHHHHHHHHHHHHHHH---------S-------TTCEEEEESHHHHSCCCTTCCEE
T ss_pred hHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHH---------C-------CCcEEEEeeeccCCCCCCCCCee
Confidence 3567777777764 7799999999999999999999862 1 36899999999999999999999
Q ss_pred EEeecCCCCC------ch-hhHHHH---HHHHHhcCCCceeeEeecCCcccEEEEEe--cCeeeeEEeeeccccccCCCC
Q 004767 105 TLCVGPRHAT------RE-EDFFGE---LHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDL 172 (732)
Q Consensus 105 ~lcv~P~~v~------r~-~dFf~~---l~~~L~~~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~ip~~l 172 (732)
+++..+.... +. ...... +.+.+. ...++.+. |.+||||||||.+ .||+|||+|++.
T Consensus 67 lvI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~-~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~--------- 135 (384)
T 3hj4_A 67 ISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEAS-AMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI--------- 135 (384)
T ss_dssp EEEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHH-HHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH---------
T ss_pred EEEecCCCcccccccchhhHHHHHHHHHHHhhcc-cCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc---------
Confidence 8777754321 10 001111 222222 13566665 4599999999997 599999999874
Q ss_pred CCCchhhhccchhhhhhhcchhhhHHHHHHHcCC-hhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHhC-
Q 004767 173 DISQDSILQNADEQTVRSLNGCRVTDQILRLVPK-IQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLY- 250 (732)
Q Consensus 173 dl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~-~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vcQly- 250 (732)
+|++.+..|..+... .++||.|+++||+||++|||+++..|+||||+|+|||+++||..
T Consensus 136 -------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~ 196 (384)
T 3hj4_A 136 -------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG 196 (384)
T ss_dssp -------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHT
T ss_pred -------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCC
Confidence 467778888877776 55799999999999999999999999999999999999999974
Q ss_pred --CCC------------------------------------CHHHH----HHHHHHHhccCCCCCceee-cccccC-C--
Q 004767 251 --PNA------------------------------------VPSML----VSRFFRVYTQWRWPNPVLL-CAIEEG-S-- 284 (732)
Q Consensus 251 --Pna------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~l-~~i~~G-~-- 284 (732)
|+. ++++| |.+||+||+.|||.+-|+. +.++.- .
T Consensus 197 vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~ 276 (384)
T 3hj4_A 197 LLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVY 276 (384)
T ss_dssp SSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHH
T ss_pred CCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCccccccc
Confidence 221 26777 9999999999999998763 222210 0
Q ss_pred -------------CCccccCC-----C-C----------------CCCCCCCceeEeCCCCCCCCcccccChhhHHHHHH
Q 004767 285 -------------LGLQVWDP-----R-R----------------NPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMD 329 (732)
Q Consensus 285 -------------l~~~vWdP-----~-~----------------~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~ 329 (732)
-..+.|.. . . .......++.|+| +.-.+|+++.|+.+....|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (384)
T 3hj4_A 277 ERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQ 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHH
T ss_pred chhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHH
Confidence 01234531 0 0 0112346899999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccCCc
Q 004767 330 EFQRGHEICEAMEKNEADVDWDTLFEPF 357 (732)
Q Consensus 330 EF~RA~~Il~~i~~~~~~~~W~~Lfep~ 357 (732)
||+||++|+.+-+. +...+++|...
T Consensus 356 ~~~~~~~~~~~~~~---~~~~~~~~~~~ 380 (384)
T 3hj4_A 356 EFNRLREMLIDKES---ELKFDEVFRES 380 (384)
T ss_dssp HHHHHHHHHTTTGG---GCCHHHHTCCC
T ss_pred HHHHHHHHHhcccc---cccHHHHhhhc
Confidence 99999999875332 23677777543
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=327.85 Aligned_cols=234 Identities=16% Similarity=0.262 Sum_probs=188.0
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceEEe
Q 004767 28 TRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLC 107 (732)
Q Consensus 28 t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~lc 107 (732)
++++.+++.. +-||++|.+.|..++.+|++++++. + ++++|++|||+++|+++|+||||+++
T Consensus 135 ~~EI~~f~~~--i~PT~eE~~~R~~vv~~le~ii~~~---------f-------P~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 135 DDQLNTLLKE--FQLTEENTKLRYLTCSLIEDMAAAY---------F-------PDCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp HHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHTTT---------S-------TTCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHH---------C-------CCCEEEEeCCCccCCCCCCCCeEEEE
Confidence 4455555543 5699999999999999999999752 2 36899999999999999999999876
Q ss_pred ecCCCCC----------------------c--hhhHHHHHHHHHhcC-CCceeeEeecCCcccEEEEEec--CeeeeEEe
Q 004767 108 VGPRHAT----------------------R--EEDFFGELHQMLTEM-PEVTELHPVPDAHVPVMKFKFS--GVSIDLLY 160 (732)
Q Consensus 108 v~P~~v~----------------------r--~~dFf~~l~~~L~~~-~~V~~l~~I~~ArVPIIKf~~~--GI~iDLsf 160 (732)
..+.... | ...++..+.+.|++. +++.+++.|.+||||||||.+. ||+|||+|
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~ 276 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTT 276 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEEC
T ss_pred ecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEec
Confidence 5543110 0 013566777888874 7889999999999999999995 99999999
Q ss_pred eeccccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCC-cChHHH
Q 004767 161 ARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGF-LGGINW 239 (732)
Q Consensus 161 a~l~~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~-LGG~sw 239 (732)
++. +|++.+..|..+.-.+++||.|+++||+|||+|||+++..|+ ||||+|
T Consensus 277 nn~----------------------------~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL 328 (464)
T 3pq1_A 277 NNR----------------------------IALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 328 (464)
T ss_dssp SCT----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHH
T ss_pred CCC----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHH
Confidence 874 478888888888888999999999999999999999999997 999999
Q ss_pred HHHHHHHHHhC-----CC------------------------------------CCHHHHHHHHHHHhccCCCCCceeec
Q 004767 240 ALLVARICQLY-----PN------------------------------------AVPSMLVSRFFRVYTQWRWPNPVLLC 278 (732)
Q Consensus 240 alLVa~vcQly-----Pn------------------------------------as~~~LL~~FF~~Ys~wdW~~pV~l~ 278 (732)
+|||++++|.. |+ .++++||..||+||++|||.+.|+.
T Consensus 329 ~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs- 407 (464)
T 3pq1_A 329 TMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX- 407 (464)
T ss_dssp HHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC-
T ss_pred HHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc-
Confidence 99999999975 21 1568999999999999999987641
Q ss_pred ccccCCCCccccCCCCCCCCCCCceeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHH
Q 004767 279 AIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEA 340 (732)
Q Consensus 279 ~i~~G~l~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~ 340 (732)
| ..|++.||+...++.++.|+++|..||+.
T Consensus 408 --------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 408 --------------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp --------------------------C------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred --------------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 1 78999999999999999999999999983
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.26 E-value=5.8e-10 Score=123.13 Aligned_cols=333 Identities=18% Similarity=0.180 Sum_probs=199.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCC-CCceEEee
Q 004767 30 KLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPG-ADIDTLCV 108 (732)
Q Consensus 30 eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~-SDID~lcv 108 (732)
.+.++|.. +-|+++|.+.=..+.+.|...+++ + +.+++..|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 45566654 679999988877777777777765 1 247999999999999997 89999999
Q ss_pred cCCCCCchhhHH----HHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccccccCCCCCCCchhhhccch
Q 004767 109 GPRHATREEDFF----GELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNAD 184 (732)
Q Consensus 109 ~P~~v~r~~dFf----~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~ip~~ldl~~~~lL~~ld 184 (732)
.|....++ ++= ..+.+.|.+ . .+.-|.=|-+...+.|+++|+.=|--. .... .+....|
T Consensus 66 f~~~~~~e-~l~~~~l~~~~e~l~~---~----~~~ya~hpyV~~~f~g~~vDVVP~y~v----~~g~-----~~~tavD 128 (437)
T 1r89_A 66 FPEEFSKE-ELRERGLEIGKAVLDS---Y----EIRYAEHPYVHGVVKGVEVDVVPCYKL----KEPK-----NIKSAVD 128 (437)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHHSSS---E----EEEESSSEEEEEEETTEEEEEEEEECC----SSSS-----CCCSHHH
T ss_pred cCCCCCHH-HHHHHHHHHHHHHHHH---h----hhhccCCceEEEEecceEEEEEEEEEc----cCCc-----ccccccc
Confidence 88776543 332 223333332 1 245566688888889999999854221 0000 0110111
Q ss_pred hhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCC--CCCCcChHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004767 185 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSN--VAGFLGGINWALLVARICQLYPNAVPSMLVSRF 262 (732)
Q Consensus 185 e~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn--~~G~LGG~swalLVa~vcQlyPnas~~~LL~~F 262 (732)
- ...-++++.+...+ ++..+|++|+|.|.-|+|++ ..++++||.+=||++++ .+-..+|..+
T Consensus 129 r-------tp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~~ 192 (437)
T 1r89_A 129 R-------TPFHHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKNA 192 (437)
T ss_dssp H-------HHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHHH
T ss_pred C-------cHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHHH
Confidence 0 01223444333222 88999999999999999987 45779999999999994 2333333333
Q ss_pred HHHhccCCCCCceeecccccCCCCccccCCCCCCCCCCCceeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 004767 263 FRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAME 342 (732)
Q Consensus 263 F~~Ys~wdW~~pV~l~~i~~G~l~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~ 342 (732)
+ +|..++.+. ++.+ .. .....+.|+||.+|..|+|.++|..++..+..+-+...+
T Consensus 193 ----~--~w~~~~~Id-~~~~--------~~----~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~------ 247 (437)
T 1r89_A 193 ----R--RWTRRTVID-VAKG--------EV----RKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFME------ 247 (437)
T ss_dssp ----T--TCCTTEEEE-GGGT--------EE----EECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHH------
T ss_pred ----H--HhCCCeEEe-cCCC--------cc----cCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHh------
Confidence 3 455565431 1100 00 002357899999999999999999988888776554433
Q ss_pred hccCCCCcccccCCc--------chhh----hccceEEEEeeecChhhhhhhhhHHHHHHHHHHHHHhhccccceeec-c
Q 004767 343 KNEADVDWDTLFEPF--------TFFE----AYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCH-P 409 (732)
Q Consensus 343 ~~~~~~~W~~Lfep~--------~Ff~----~Yk~yL~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~~h-p 409 (732)
.. =.++|.|. ++-. +=.+.+.|.....+.-+= ..-|-++--.+.|...||+....++... .
T Consensus 248 -~p----s~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D-~l~pQl~k~~~~i~~~L~~~gF~v~~~~~~ 321 (437)
T 1r89_A 248 -AP----SLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDD-NLYPQLERASRKIFEFLERENFMPLRSAFK 321 (437)
T ss_dssp -SC----CGGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHH-HHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred -Cc----cHHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcc-cchHHHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 21 12444332 1111 112456666655543222 2346666667777778888766666544 4
Q ss_pred CCCCCCCCCCCceEEEEEeeEecCCC--CCCCCcccchHHHHHHHHH
Q 004767 410 HPGDFSDKSKPLYCSYFMGLQRKQGV--PVGEGEQFDIRLTVKEFKQ 454 (732)
Q Consensus 410 ~P~~f~~~~~~~~~~ffIGL~~~~~~--~~~~~~~~Dl~~~v~eF~~ 454 (732)
|- +. .|+.++=|...+-. ....|..+..+.-...|.+
T Consensus 322 ~~----~~----~~~l~~e~~~~~lp~~~~~~GPpv~~~~~~~~F~~ 360 (437)
T 1r89_A 322 AS----EE----FCYLLFECQIKEISRVFRRMGPQFEDERNVKKFLS 360 (437)
T ss_dssp EC----SS----EEEEEEEESCSCCCSEEEEEEEETTCHHHHHHHHH
T ss_pred cc----CC----eeEEEEEEcccccCCeeEeeCCCccchhhHHHHHH
Confidence 32 21 34444444322110 1112334555566788877
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.14 E-value=9.7e-09 Score=109.93 Aligned_cols=273 Identities=15% Similarity=0.208 Sum_probs=143.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccC-cEEEEeeeeecCCCCCC-CCceEE
Q 004767 29 RKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEAN-AKIFTFGSYRLGVHGPG-ADIDTL 106 (732)
Q Consensus 29 ~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~-~kI~~FGSy~lGv~~p~-SDID~l 106 (732)
.+|.+++.+ .+-|+.++...=+.+++.|...+++- +.+ + .. .... .+++.+|||+-|.++++ ||||++
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~----~~~-~--~~--~~~~v~~v~~~GSyargT~lrg~sDiDlv 78 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKER----CFQ-G--TA--DPVRVSKVVKGGSSGKGTTLRGRSDADLV 78 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHH----TTC-C-------CCEEEEEEEEEEC--------CEEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhh----hcc-c--cc--CCcceEEEEEecCcCCCcccCCCCceeEE
Confidence 457778753 57899988876666677666666541 100 0 00 0011 37889999999999986 899999
Q ss_pred eecCCCCCch------hhHHHHHHHHHhcC---CCce-eeEee-cCCccc-EEEEEe------cCeeeeEEeeecccccc
Q 004767 107 CVGPRHATRE------EDFFGELHQMLTEM---PEVT-ELHPV-PDAHVP-VMKFKF------SGVSIDLLYARLSLWVI 168 (732)
Q Consensus 107 cv~P~~v~r~------~dFf~~l~~~L~~~---~~V~-~l~~I-~~ArVP-IIKf~~------~GI~iDLsfa~l~~~~i 168 (732)
++.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+ .|++||++=|--....+
T Consensus 79 V~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~ 158 (349)
T 1px5_A 79 VFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQW 158 (349)
T ss_dssp EEEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSC
T ss_pred EEECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhccc
Confidence 9887643321 13444455555531 1121 12211 111245 366666 47999988654321111
Q ss_pred CCCCCCCchh---hhccchhhhhhhcchhhh---HHHHHHHc-CChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHH
Q 004767 169 PEDLDISQDS---ILQNADEQTVRSLNGCRV---TDQILRLV-PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWAL 241 (732)
Q Consensus 169 p~~ldl~~~~---lL~~lde~svrSLNG~Rv---td~IlrlV-P~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swal 241 (732)
...-....+. ++...... .-.|... +..-.+.+ .....++.++|+||+|-++.+. ....+.+.||.+-+
T Consensus 159 ~~~~~~~~~~y~~li~~~~~~---~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lEL 234 (349)
T 1px5_A 159 TPGYKPNPEIYVQLIKECKSR---GKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALEL 234 (349)
T ss_dssp CTTSCCCHHHHHHHHHHHHHH---TCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHH
T ss_pred ccccCCChHHHHHHHhhcccc---ccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHH
Confidence 0000000111 11100000 0011111 11111222 1246899999999999998764 22346789999999
Q ss_pred HHHHHHHhCCCC---CHHHHHHHHHHHhccCCCCCceeecccccCCCCccccCCCCCCCC-----------CCCceeEeC
Q 004767 242 LVARICQLYPNA---VPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKD-----------KYHLMPIIT 307 (732)
Q Consensus 242 LVa~vcQlyPna---s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~G~l~~~vWdP~~~~~d-----------r~hlMpIiT 307 (732)
|+++.....+.. +..+-+..+|++-++|.- ..| .|..-.+..+ +...--|+|
T Consensus 235 L~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i-------------~w~~~y~~~~~~~~~fl~~~l~~~~p~I~D 300 (349)
T 1px5_A 235 LTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCI-------------FWEAYYDFTNPVVGRCMLQQLKKPRPVILD 300 (349)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEE-------------CCCSSCCSSSHHHHHHHHHHHTSSSCEEBC
T ss_pred HHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-cce-------------eeeccccccchhHHhhhhhhhcCCCCeeeC
Confidence 999988766543 566778888888887631 112 3432111111 011236999
Q ss_pred CCCCCCCcccccChhhHHHHHHH
Q 004767 308 PAYPCMNSSYNVSTSTLRIMMDE 330 (732)
Q Consensus 308 P~~P~~Nsa~NVs~sTl~vI~~E 330 (732)
|++|..|++.. +......+..|
T Consensus 301 P~dp~~NVa~~-~~~~~~~~~~~ 322 (349)
T 1px5_A 301 PADPTGNVGGG-DTHSWQRLAQE 322 (349)
T ss_dssp TTCTTCBTTCS-CHHHHHHHHHH
T ss_pred CCCCCCcccCC-chhhHHHHHHH
Confidence 99999999877 76667766633
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.96 E-value=0.001 Score=71.80 Aligned_cols=268 Identities=14% Similarity=0.082 Sum_probs=159.5
Q ss_pred CCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCC
Q 004767 19 GPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHG 98 (732)
Q Consensus 19 ~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~ 98 (732)
.|.+.|-..++.|.+-= ..+.||++|..+=..++.+++.++...+ .+.|.-+- .-..|...|||.-|+++
T Consensus 19 k~~~~d~~~~~~llkr~--~~l~Ps~eEq~~v~~lv~kI~~~ld~li----v~pg~~e~----~L~~V~rVGs~aKgtll 88 (364)
T 4at7_A 19 KPAPDETSFSEALLKRN--QDLAPNSAEQASILSLVTKINNVIDNLI----VAPGTFEV----QIEEVRQVGSYKKGTMT 88 (364)
T ss_dssp SCCCCCHHHHHHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHH----HCCTTCSS----CEEEEEEEHHHHHTCCC
T ss_pred CCCCChHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHhhh----cCCCcccc----ccceeEEeccccCCcee
Confidence 36667778888887644 3589999999888888888888887644 33342211 11468999999999999
Q ss_pred CCC-CceEEeecCCCCCch--hhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccccccCCCCCCC
Q 004767 99 PGA-DIDTLCVGPRHATRE--EDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDIS 175 (732)
Q Consensus 99 p~S-DID~lcv~P~~v~r~--~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~ip~~ldl~ 175 (732)
.|. |+|++|++..-.|.+ +....++.+-|+....-..+....+.+.=.|+-....+.|=|.....+.... .
T Consensus 89 ~G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~~~~~~v~i~It~tsp~lrk~------d 162 (364)
T 4at7_A 89 TGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKL------D 162 (364)
T ss_dssp TTCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEEECSSCEEEEEEEECHHHHHTC------C
T ss_pred cCCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEEecCCCcEEEEEEeCChhhccC------C
Confidence 975 899999997777752 0133444555554211111111111110001000001222222222111110 0
Q ss_pred chhhhccch-hhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHhCC---
Q 004767 176 QDSILQNAD-EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP--- 251 (732)
Q Consensus 176 ~~~lL~~ld-e~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vcQlyP--- 251 (732)
... .+| ..+..+|-.+|-+.++...... ...+.++|++|.-.++. ..++.|.+|++-+|+.+..-.-|
T Consensus 163 p~~---~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~----~~w~pL~~waLELL~~~Ai~s~~~~~ 234 (364)
T 4at7_A 163 PEL---HLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRF----PGFEPLTPWILDLLGHYAVMNNPTRQ 234 (364)
T ss_dssp TTT---BCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHC----GGGTTCCHHHHHHHHHHHHHSSTTSS
T ss_pred hhH---hcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhc----CCcCCCCHHHHHHHHHHHHhcCCCCC
Confidence 111 122 3577778889999988877764 66788999999955554 22357888777777777666544
Q ss_pred CCCHHHHHHHHHHHhcc-CCCCCceeecccccCCCCccccCCCCCCCCCCCceeEeCCCCC-CCCcccccChhhHHHHHH
Q 004767 252 NAVPSMLVSRFFRVYTQ-WRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP-CMNSSYNVSTSTLRIMMD 329 (732)
Q Consensus 252 nas~~~LL~~FF~~Ys~-wdW~~pV~l~~i~~G~l~~~vWdP~~~~~dr~hlMpIiTP~~P-~~Nsa~NVs~sTl~vI~~ 329 (732)
..+++.-+.++|+..+. +=.|. . --|.||+.+ ..++....|..-...|..
T Consensus 235 ~l~~~~afRRVLElLAsGillp~----------~------------------~Gi~DPCE~~~~~v~~~lt~qq~e~it~ 286 (364)
T 4at7_A 235 PLALNVAYRRCLQILAAGLFLPG----------S------------------VGITDPCESGNFRVHTVMTLEQQDMVCY 286 (364)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSTT----------B------------------CCCBCTTSSSCCBGGGGSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCcccCC----------C------------------CCCcCCCCCCCcchhccCCHHHHHHHHH
Confidence 46899999999998773 21111 0 115577776 466666666666666666
Q ss_pred HHHHHHHHH
Q 004767 330 EFQRGHEIC 338 (732)
Q Consensus 330 EF~RA~~Il 338 (732)
--|.+.+++
T Consensus 287 sAQ~~LRll 295 (364)
T 4at7_A 287 TAQTLVRIL 295 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 13
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.07 E-value=0.046 Score=59.50 Aligned_cols=265 Identities=14% Similarity=0.170 Sum_probs=155.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC-h---------hhhh--------c----cCcEEEEeeee
Q 004767 38 VNLYESQEEAVSREEVLGRLDQIVK---IWVKKISRAKGLN-D---------QLLQ--------E----ANAKIFTFGSY 92 (732)
Q Consensus 38 ~~l~pS~eE~~~R~~VL~~L~~ivk---~wv~~v~~~~g~~-~---------~~~~--------~----~~~kI~~FGSy 92 (732)
..+||++||.+.=+.++..+++.+| +|+.+-....+-. + ...+ + .-.-|.-.|+|
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 3579999999999999999998776 4544321111000 0 0000 0 01235669999
Q ss_pred ecCCCCCC-CCceEEeecCCCCCchhhHHHHHHHHHh----cCC-Cceee-EeecCCcccEEEEEecCeeeeEEeeeccc
Q 004767 93 RLGVHGPG-ADIDTLCVGPRHATREEDFFGELHQMLT----EMP-EVTEL-HPVPDAHVPVMKFKFSGVSIDLLYARLSL 165 (732)
Q Consensus 93 ~lGv~~p~-SDID~lcv~P~~v~r~~dFf~~l~~~L~----~~~-~V~~l-~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 165 (732)
.-|+.+.| -+.|+|+++..-.|+ .+...+.+.|. ... +-..+ ..+.+|-+=|-.-....+.|=|++.+...
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~~ 178 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVV 178 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHHH
T ss_pred cccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCccc
Confidence 99999975 699999999887776 46666655554 321 11122 22344422111000112445555544311
Q ss_pred c----ccC--CCCCCCchhhhccch-hhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHH
Q 004767 166 W----VIP--EDLDISQDSILQNAD-EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGIN 238 (732)
Q Consensus 166 ~----~ip--~~ldl~~~~lL~~ld-e~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~s 238 (732)
. .+. +.+...+. -..+| ..|+.+|-.+|-+.++............++|++|.-.++.. -++-|.+|+
T Consensus 179 re~~~~~~~~~~~~~~dp--~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~wa 252 (383)
T 4at7_B 179 REEMEKVLAGETLSVNDP--PDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGWP 252 (383)
T ss_dssp HHHHHHHHTTCCCCCCCC--TTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTHH
T ss_pred ccchhhcccccccccCCh--hhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHhH
Confidence 0 000 11111111 01123 35788888889888887766666677889999999666642 235688888
Q ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHHhccCCCCCceeecccccCCCCccccCCCCCCCCCCCceeEeCCCC--CCCCc
Q 004767 239 WALLVARICQL-YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAY--PCMNS 315 (732)
Q Consensus 239 walLVa~vcQl-yPnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~G~l~~~vWdP~~~~~dr~hlMpIiTP~~--P~~Ns 315 (732)
+=+|+.+..-. .-+.++++-+.++|+..+..-.- |. .=-|.||++ |..|.
T Consensus 253 LELL~~~ai~s~~~~l~~~~afRRVLEllasG~lL-------------------p~--------~pgI~DPcEk~pt~~~ 305 (383)
T 4at7_B 253 LELLCEKSIGTANRPMGAGEALRRVLECLASGIVM-------------------PD--------GSGIYDPCEKEATDAI 305 (383)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTTTS-------------------TT--------SCCCBCTTCSSCCBTT
T ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCccc-------------------CC--------CCCccCCCCCCCcccc
Confidence 88888777653 12357899999999997742111 10 012668888 76666
Q ss_pred ccccChhhHHHHHHHHHHHHHHH
Q 004767 316 SYNVSTSTLRIMMDEFQRGHEIC 338 (732)
Q Consensus 316 a~NVs~sTl~vI~~EF~RA~~Il 338 (732)
+ ..+......|..+-+.+.+++
T Consensus 306 ~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 306 G-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp T-TCCHHHHHHHHHHHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHHHHHHHHH
Confidence 5 566677788888777776654
No 14
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.03 E-value=0.002 Score=58.28 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=32.5
Q ss_pred cEEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhc
Q 004767 84 AKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 129 (732)
Q Consensus 84 ~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~ 129 (732)
.+++.|||++-|-+.++||||++++.+...+. ..+..+...|.+
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~--~~~~~l~~~l~~ 71 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPLDF--LARDRLKEAFSE 71 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCCCH--HHHHHHHHHHHH
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCCCH--HHHHHHHHHHHh
Confidence 57999999999999999999999888754432 112345555554
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.92 E-value=0.0012 Score=59.92 Aligned_cols=53 Identities=25% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceEEeecCCC
Q 004767 48 VSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRH 112 (732)
Q Consensus 48 ~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~ 112 (732)
..+.++++.|++++....+. . + .-..++.|||++-|-+.++||||++++....
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~----~--~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS----F--P------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----C--T------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHH----c--C------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 45677777777777654322 1 1 1157999999999999999999998887653
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.87 E-value=0.0012 Score=58.28 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceEEeecCCCC
Q 004767 52 EVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHA 113 (732)
Q Consensus 52 ~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v 113 (732)
++++.+++.+....+ +.|. ..++.|||++-|-+.++||||++++.+...
T Consensus 7 ~~l~~l~~~i~~l~~----~~~v---------~~v~LFGS~arG~~~~~SDiDl~V~~~~~~ 55 (98)
T 1wot_A 7 ETLRARREAVLSLCA----RHGA---------VRVRVFGSVARGEAREDSDLDLLVAFEEGR 55 (98)
T ss_dssp HHHHHHHHHHHHHHH----HHTC---------SSCEECSHHHHTCCCTTCCCEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHH----HcCC---------cEEEEEccccCCCCCCCCCEEEEEEeCCCC
Confidence 566666666654332 2232 459999999999999999999888776433
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.42 E-value=0.006 Score=53.56 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=26.0
Q ss_pred cEEEEeeeeecCCCCCC-CCceEEeecCC
Q 004767 84 AKIFTFGSYRLGVHGPG-ADIDTLCVGPR 111 (732)
Q Consensus 84 ~kI~~FGSy~lGv~~p~-SDID~lcv~P~ 111 (732)
.+++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 68999999999999999 99999988875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.08 E-value=0.049 Score=56.50 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceEEeecCC
Q 004767 46 EAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPR 111 (732)
Q Consensus 46 E~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~ 111 (732)
|.-.|+++.+.|+++++...+ ..+ . -.+|+.||||+-|-+.++||||++++...
T Consensus 15 ~~~~~q~Vq~eL~~ive~L~~----~~~---~-----i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 15 ENLYFQGVQHTIARWVDRLRE----EYA---D-----AVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HCT---T-----EEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred hccChHHHHHHHHHHHHHHHH----hcC---C-----ceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 344566666666666654322 111 0 15799999999999999999999888754
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=93.85 E-value=0.068 Score=54.57 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=25.9
Q ss_pred cEEEEeeeeecCCCCCCCCceEEeecCCC
Q 004767 84 AKIFTFGSYRLGVHGPGADIDTLCVGPRH 112 (732)
Q Consensus 84 ~kI~~FGSy~lGv~~p~SDID~lcv~P~~ 112 (732)
..|+.|||++-|-+.++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 57999999999999999999998887644
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.53 E-value=0.42 Score=51.12 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=58.3
Q ss_pred cCcEEEEeeeeecCCCCCCCCceEEeecCCCCCch---hhHHHHHHHHHhcCCCceeeEeecCCcccEE-EEEe------
Q 004767 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRE---EDFFGELHQMLTEMPEVTELHPVPDAHVPVM-KFKF------ 151 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~---~dFf~~l~~~L~~~~~V~~l~~I~~ArVPII-Kf~~------ 151 (732)
...++..-||||=|--+ ..|||+|+..|.....+ ..++..+.+.|.+.+.++++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 35789999999998876 56999988887432210 1578888889999899888776666654443 3322
Q ss_pred -cCeeeeEEeeec
Q 004767 152 -SGVSIDLLYARL 163 (732)
Q Consensus 152 -~GI~iDLsfa~l 163 (732)
.|+.|||.++..
T Consensus 250 ~~~~rVDl~~vp~ 262 (335)
T 2fmp_A 250 YPHRRIDIRLIPK 262 (335)
T ss_dssp CCCEEEEEEECCG
T ss_pred CCceEEEEEEECH
Confidence 279999998764
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=91.89 E-value=0.63 Score=49.77 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=74.1
Q ss_pred cCcEEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeec-----CCcc-cEEEEEe---c
Q 004767 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVP-----DAHV-PVMKFKF---S 152 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~-----~ArV-PIIKf~~---~ 152 (732)
...++..-||||=|--+ .+|||+|+..|..... ..++..+.+.|.+.+.++++-... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999999877 5699998888765433 367888889999888887654431 1222 1112221 5
Q ss_pred CeeeeEEeeeccccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCC
Q 004767 153 GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAG 232 (732)
Q Consensus 153 GI~iDLsfa~l~~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G 232 (732)
|+.|||.++..... .-.++-+--+ .. -.|.++.||+++|+-=|-+|
T Consensus 246 ~~rVDl~~vp~~~~------------------------------g~ALl~fTGS-~~---fnr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSEF------------------------------ACALLYFTGS-AH---FNRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGGH------------------------------HHHHHHHHCC-HH---HHHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHHH------------------------------HHHHHHhhCC-HH---HHHHHHHHHHHcCCCccccc
Confidence 78999998654211 1112222222 12 25778999999988666666
Q ss_pred C
Q 004767 233 F 233 (732)
Q Consensus 233 ~ 233 (732)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=90.00 E-value=1 Score=47.38 Aligned_cols=104 Identities=11% Similarity=0.152 Sum_probs=55.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceEEeecCCCCCchh
Q 004767 38 VNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREE 117 (732)
Q Consensus 38 ~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~ 117 (732)
.|+.|---..+..++++++|.+.+++ .+ .--.|..+||+..|-...-||||++++...... +
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~-----------d~-----~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~--~ 73 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTES-----------DE-----RITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT--S 73 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHH-----------CT-----TEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT--T
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhc-----------CC-----CEEEEEEECCccCCCCCCccceeEEEEEcCcch--h
Confidence 36666666667777788877776653 01 114589999999999999999999887643111 0
Q ss_pred hHHHHHHHHHhcCCCceeeEeecCCcccEEEEEe-cCeeeeEEeeecc
Q 004767 118 DFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF-SGVSIDLLYARLS 164 (732)
Q Consensus 118 dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~-~GI~iDLsfa~l~ 164 (732)
.| .. ..-|.....+-- ..++.++- .++.| +|+.|||.+..+.
T Consensus 74 ~f-~~-~~Wl~~fG~~~~--~f~~~~~~-~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 74 NF-DS-SNWLFDVAPYLM--LYKNEYGT-EVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp TC-CH-HHHHHHHCCEEE--EEECTTSC-EEEEETTSCEEEEEEEEGG
T ss_pred hh-hh-HHHHHHhhhhhe--Eeecccce-EEEEecCCcEEEEEEeeHH
Confidence 12 11 122222122111 12223332 23444 7999999999875
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=89.96 E-value=0.34 Score=47.49 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=54.5
Q ss_pred hhhhhccCcEEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhc--CCCce-eeEeecCCcccEEEEEe-
Q 004767 76 DQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE--MPEVT-ELHPVPDAHVPVMKFKF- 151 (732)
Q Consensus 76 ~~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~--~~~V~-~l~~I~~ArVPIIKf~~- 151 (732)
.+.++.+++++..-||||=|-.+-+ |||+|+..+. ...+.+.|.+ .+.++ ++..-.+.++-+ ++..
T Consensus 24 ~~~ik~~g~~v~iaGS~RRgket~g-DiDiLit~~~--------~~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~ 93 (174)
T 1jaj_A 24 GQLIKILSKNIVAVGSLRREEKMLN-DVDLLIIVPE--------KKLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWE 93 (174)
T ss_dssp TEEEEECTTTEEEEEHHHHTCSEEC-CEEEEEEESS--------HHHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESS
T ss_pred cccccCCCcEEEEeccccCCCCCCC-CEEEEEecCC--------HHHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCC
Confidence 4445566888999999999987754 9998887774 1345556677 77777 665555555433 3433
Q ss_pred -cCeeeeEEeeec
Q 004767 152 -SGVSIDLLYARL 163 (732)
Q Consensus 152 -~GI~iDLsfa~l 163 (732)
.|+.|||.++..
T Consensus 94 ~~~~rVDl~~vp~ 106 (174)
T 1jaj_A 94 KKTYQLDLFTALA 106 (174)
T ss_dssp SCCEEEEEEEEET
T ss_pred CCceEEEEEEeCH
Confidence 689999998765
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=87.68 E-value=1.9 Score=46.43 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=40.8
Q ss_pred cCcEEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCce
Q 004767 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVT 134 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~ 134 (732)
...++..-||||=|--+ ..|||+|+..|..... ..++..+.+.|.+.+.|+
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCee
Confidence 45789999999999877 5699998888765433 368888889998887776
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=82.52 E-value=6.2 Score=42.89 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=38.9
Q ss_pred cCcEEEEeeeeecCCCCCCCCceEEeecCCCCCch-hhHHHHHHHHHhcCCCcee
Q 004767 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRE-EDFFGELHQMLTEMPEVTE 135 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~-~dFf~~l~~~L~~~~~V~~ 135 (732)
...++..-||||=|--+- .|||+|+..|...... ..++..+.+.|.+.+.|+.
T Consensus 195 ~~~~v~i~GSyRRgket~-gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~ 248 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMTG-HDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLY 248 (381)
T ss_dssp TTCEEEECHHHHTTCSCB-SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEccccccCCCCc-CCeEEEEeCCCccccchhhHHHHHHHHHHhCCCccc
Confidence 457899999999998774 5999888877654211 1267788888888777743
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=79.77 E-value=9 Score=43.47 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=69.7
Q ss_pred CcEEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeee
Q 004767 83 NAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYAR 162 (732)
Q Consensus 83 ~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~ 162 (732)
..++..-||||=|--+- .|||+|+..|.. ..+.+.|.+.+.|+++......++-+ ++ -.|+.|||.++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~--------~~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREG--------ERAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSH--------HHHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCH--------HHHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEEC
Confidence 57899999999888764 499988877742 23556677788887765555555333 11 268999999876
Q ss_pred ccccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCc
Q 004767 163 LSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFL 234 (732)
Q Consensus 163 l~~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~L 234 (732)
...+ .-.++-+.-+. . -.|.++.||++||+-=|-+|..
T Consensus 249 ~~~~------------------------------~~al~~~TGs~-~---~n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PESY------------------------------GAGLQYLTGSA-A---HSIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGGH------------------------------HHHHHHHHCCH-H---HHHHHHHHHHHTTCEEETTEEE
T ss_pred HHHH------------------------------HHHHHHhhCCH-H---HHHHHHHHHHHcCCCcchhhcc
Confidence 4211 11122222221 2 2578899999999877777753
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=66.69 E-value=7.5 Score=42.88 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=36.2
Q ss_pred cCcEEEEeeeeecCCCCCCCCceEEeecCCC-CC-------chhhHHHHHHHHHhc
Q 004767 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRH-AT-------REEDFFGELHQMLTE 129 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~-v~-------r~~dFf~~l~~~L~~ 129 (732)
...-|..+|||+=+=-.++||||+++|.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4578999999999999999999999987633 11 113688888877654
No 28
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=53.97 E-value=16 Score=38.11 Aligned_cols=75 Identities=16% Similarity=0.029 Sum_probs=35.1
Q ss_pred EEEEeeeeecCC--CCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeec--------CCcccEEEEEe-cC
Q 004767 85 KIFTFGSYRLGV--HGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVP--------DAHVPVMKFKF-SG 153 (732)
Q Consensus 85 kI~~FGSy~lGv--~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~--------~ArVPIIKf~~-~G 153 (732)
-|+..||...+- ...-||+|+++++... +.|... ...|.+-..+-.++.-. .-.-|..-+.+ +|
T Consensus 25 Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~dg 99 (294)
T 2pbe_A 25 LVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDG 99 (294)
T ss_dssp EEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETTS
T ss_pred EEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecCC
Confidence 488899999855 7888999999988632 123321 11222222222222111 11223343444 79
Q ss_pred eeeeEEeeecc
Q 004767 154 VSIDLLYARLS 164 (732)
Q Consensus 154 I~iDLsfa~l~ 164 (732)
+.|||.|..+.
T Consensus 100 ~rIDl~~~~~~ 110 (294)
T 2pbe_A 100 NKLDLTLIPIR 110 (294)
T ss_dssp CEEEEEEEEGG
T ss_pred cEEEEEEecHH
Confidence 99999999875
No 29
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=53.46 E-value=25 Score=39.46 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=36.5
Q ss_pred cCcEEEEeeeeecCCCCCCCCceEEeecCCCCC---------chhhHHHHHHHHHhc
Q 004767 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHAT---------REEDFFGELHQMLTE 129 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~---------r~~dFf~~l~~~L~~ 129 (732)
.+.-|..+|++.-+=-..+||||+++|.+.... ....||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 467899999999999999999999998764311 113688887776654
No 30
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=51.14 E-value=45 Score=32.04 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=42.8
Q ss_pred cCcEEEEeeeeec---CCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcc--cEEEEEecCeee
Q 004767 82 ANAKIFTFGSYRL---GVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHV--PVMKFKFSGVSI 156 (732)
Q Consensus 82 ~~~kI~~FGSy~l---Gv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArV--PIIKf~~~GI~i 156 (732)
.+..-...|||++ |+-.+.-|||+++ .+ ++ ...+.+.|.+. +......-.+... -...+.+.|+.|
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i-~~------~d-a~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~V 102 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQT-DE------EG-AYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXV 102 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEE-CH------HH-HHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEe-cc------cC-HHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEE
Confidence 4566888899987 5556788999766 21 12 35667777753 2222222222221 144566689999
Q ss_pred eEEee
Q 004767 157 DLLYA 161 (732)
Q Consensus 157 DLsfa 161 (732)
||...
T Consensus 103 Dlm~~ 107 (169)
T 2fcl_A 103 EIMGD 107 (169)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 99964
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=34.69 E-value=55 Score=37.16 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=57.1
Q ss_pred EEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccc
Q 004767 86 IFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 165 (732)
Q Consensus 86 I~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 165 (732)
+..-||||=|--+-+ |||+|+.. . . +.. |.+.+.|+ .-...++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~---~-~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-T---P-DDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-C---H-HHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-C---h-HHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 888999999887654 99987766 1 1 121 55567765 222334322 33 89999999876421
Q ss_pred cccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHH-HHHHHHHHHcCCCCCCCCCc
Q 004767 166 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTL-RCMRFWAKRRGVYSNVAGFL 234 (732)
Q Consensus 166 ~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~ll-r~IK~WAK~RgIysn~~G~L 234 (732)
+ .-.++-+.- .-. |.++.||++||.-=|-+|..
T Consensus 243 ~------------------------------~~al~~~TG------~~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 R------------------------------GALDLLRSG------EHFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp H------------------------------HHHHHHTSC------HHHHHHHHHHHHTTTCEEETTEEE
T ss_pred H------------------------------HHHHHHHhh------hhHHHHHHHHHHHcCCCcChhhcc
Confidence 1 111222222 123 77899999999877777754
Done!