Query 004767
Match_columns 732
No_of_seqs 252 out of 721
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 05:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004767.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004767hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q79a2 d.218.1.3 (A:19-214) P 100.0 1.3E-52 9.8E-57 416.4 21.6 196 8-204 1-196 (196)
2 d2q66a2 d.218.1.3 (A:5-201) Po 100.0 2.6E-52 1.9E-56 414.7 23.0 197 7-204 1-197 (197)
3 d1q79a1 a.160.1.1 (A:215-364) 100.0 9.4E-53 6.8E-57 400.5 15.6 150 205-356 1-150 (150)
4 d2q66a1 a.160.1.1 (A:202-351) 100.0 2.1E-52 1.5E-56 398.2 14.4 150 205-356 1-150 (150)
5 d2q66a3 d.58.16.1 (A:352-529) 100.0 1.2E-30 9E-35 254.6 11.9 129 357-489 1-178 (178)
6 d1q79a3 d.58.16.1 (A:365-498) 100.0 5.1E-30 3.7E-34 239.9 10.5 124 357-482 1-133 (134)
7 d2b4va1 a.160.1.4 (A:289-471) 99.9 5.7E-24 4.2E-28 204.1 11.7 144 208-355 2-183 (183)
8 d1r89a2 d.218.1.7 (A:1-142) tR 98.3 2.2E-06 1.6E-10 79.4 11.1 108 29-161 5-114 (142)
9 d1no5a_ d.218.1.5 (A:) Hypothe 98.0 6.3E-06 4.6E-10 71.4 7.9 63 49-129 4-66 (100)
10 d2b4va2 d.218.1.10 (A:30-288) 97.6 5.5E-05 4E-09 75.4 8.3 88 47-151 28-123 (259)
11 d1ylqa1 d.218.1.5 (A:1-90) Put 97.5 0.00011 7.9E-09 62.8 7.3 32 83-114 14-46 (90)
12 d1r89a1 a.160.1.3 (A:143-257) 96.7 0.00048 3.5E-08 61.1 4.1 90 214-328 6-97 (115)
13 d1wota_ d.218.1.5 (A:) Unnamed 96.6 0.0013 9.4E-08 56.4 6.1 31 84-114 26-56 (98)
14 d2bcqa3 d.218.1.2 (A:386-575) 95.9 0.027 2E-06 53.2 12.0 116 82-233 23-147 (190)
15 d1knya2 d.218.1.1 (A:1-125) Ka 95.8 0.0051 3.7E-07 54.9 5.6 28 84-111 32-59 (125)
16 d2fmpa3 d.218.1.2 (A:149-335) 95.4 0.087 6.3E-06 49.4 13.3 117 82-233 23-150 (187)
17 d1px5a1 a.160.1.2 (A:201-346) 94.4 0.12 8.8E-06 47.1 10.6 57 209-266 3-62 (146)
18 d1jmsa4 d.218.1.2 (A:303-510) 93.5 0.37 2.7E-05 45.7 12.8 66 55-133 7-73 (208)
19 d1px5a2 d.218.1.6 (A:1-200) 2' 91.8 0.61 4.4E-05 44.4 11.7 126 29-164 9-154 (200)
20 d2pbea2 d.218.1.13 (A:1-135) A 80.3 1.4 0.0001 39.2 6.5 79 86-164 24-108 (135)
21 d1jqra_ d.218.1.2 (A:) DNA pol 70.0 1.2 8.6E-05 41.1 3.1 110 83-233 31-142 (174)
22 d1v4aa2 d.218.1.9 (A:2-286) Gl 33.7 1E+02 0.0076 29.5 10.7 48 81-129 151-207 (285)
23 d2fcla1 d.218.1.11 (A:1-157) H 27.1 59 0.0043 27.9 6.8 71 82-161 20-95 (157)
No 1
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=1.3e-52 Score=416.43 Aligned_cols=196 Identities=51% Similarity=0.877 Sum_probs=192.6
Q ss_pred cccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEE
Q 004767 8 RLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIF 87 (732)
Q Consensus 8 ~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~ 87 (732)
|||||+|||+++||+.|++.+++|+++|+++++|||+||..+|++||.+|++++++|+++++.++|++++.+..++++|+
T Consensus 1 ~~GvT~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~ps~ee~~~R~~vl~~L~~lv~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (196)
T d1q79a2 1 HYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIF 80 (196)
T ss_dssp CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEE
T ss_pred CCCCCCCcccCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhccCCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccccc
Q 004767 88 TFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWV 167 (732)
Q Consensus 88 ~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~ 167 (732)
|||||++|+|+|+||||++|++|.+++++ +||..|+++|++.+.++++++|++|+||||||+++||+|||+||+++...
T Consensus 81 ~FGS~~lgv~~p~SDID~~~i~p~~~~~~-~ff~~l~~~L~~~~~v~~v~~I~~A~VPiiK~~~~gi~iDlsfa~l~~~~ 159 (196)
T d1q79a2 81 TFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQT 159 (196)
T ss_dssp EEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSS
T ss_pred EeccccccccCCCCCccEEEecCCcCCHH-HHHHHHHHHHhcCCCcceEEEeccccccEEEEEEcCeeEeehhhhcccCC
Confidence 99999999999999999999999999985 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHc
Q 004767 168 IPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLV 204 (732)
Q Consensus 168 ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlV 204 (732)
+|+++++.++++|+++|++++|||||+|||++|+++|
T Consensus 160 ~p~~l~l~~~~lL~~ld~~~~rslNG~Rv~~~il~lV 196 (196)
T d1q79a2 160 IPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 196 (196)
T ss_dssp BCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSS
T ss_pred CCcccccCChHHHhcCChhhhhhhccHHHHHHHHhhC
Confidence 9999999999999999999999999999999999986
No 2
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=2.6e-52 Score=414.70 Aligned_cols=197 Identities=46% Similarity=0.765 Sum_probs=193.3
Q ss_pred ccccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEE
Q 004767 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKI 86 (732)
Q Consensus 7 ~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI 86 (732)
++||||+|||+++||++|++.+++|+++|+++++|||+||.++|++|+++|++++++|+++++.++|+++.....++++|
T Consensus 1 ~~~Gvt~Pis~~~Pt~~d~~~s~~L~~~L~~~~~~~s~ee~~~R~~vl~~l~~iv~~~v~~~~~~~~~~~~~~~~~~~~v 80 (197)
T d2q66a2 1 KVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKI 80 (197)
T ss_dssp CCCSSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEE
T ss_pred CcCcCCCCcccCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCcEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeecccc
Q 004767 87 FTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLW 166 (732)
Q Consensus 87 ~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~ 166 (732)
+|||||++|+|+|+||||++|++|.+++|+ +||..|+++|++.+.++++++|++|+||||||+++||+|||+||+++..
T Consensus 81 ~~fGS~~lg~~~p~SDID~~~~~p~~~~~~-~ff~~l~~~L~~~~~v~~i~~I~~A~VPIIK~~~~gi~iDlsfa~l~~~ 159 (197)
T d2q66a2 81 FTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIALICARLDQP 159 (197)
T ss_dssp EEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEECSSSSCEEEEEETTEEEEEEEEECSSS
T ss_pred EecccccccccCCCCCcceEEecCCcCCHH-HHHHHHHHHHHhCCCCceeEEeecccccEEEEEEcCEEEEeecccccCC
Confidence 999999999999999999999999999985 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHc
Q 004767 167 VIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLV 204 (732)
Q Consensus 167 ~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlV 204 (732)
++|+++++.|+++|+++|++++|||||+||||+|+++|
T Consensus 160 ~~p~~l~~~~~~lL~~ld~~~~rSlNG~Rv~d~il~lV 197 (197)
T d2q66a2 160 QVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELV 197 (197)
T ss_dssp CBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCcccccCHHHHhCCCcccccccccHHHHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 3
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=9.4e-53 Score=400.54 Aligned_cols=150 Identities=59% Similarity=1.142 Sum_probs=146.6
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCceeecccccCC
Q 004767 205 PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS 284 (732)
Q Consensus 205 P~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~G~ 284 (732)
||.++||.+||+||+|||+||||+|++||||||+||||||++||+|||+++++||.+||.+|++|+|++||+|++++++.
T Consensus 1 Pn~~~Fr~~lR~IKlWAk~RGIYsn~~GflGGI~waILvArvCql~Pna~~~~ll~~FF~~ys~W~Wp~PV~l~~~~~~~ 80 (150)
T d1q79a1 1 PNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECN 80 (150)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCCCCCeeccCccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCceeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCC
Q 004767 285 LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP 356 (732)
Q Consensus 285 l~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep 356 (732)
+++++|||+.+++|+.|+||||||+||++|+|+|||.+|+++|++||+||.+|++++..++. +|++|||.
T Consensus 81 ~~~~~w~pr~~~~dr~~lMpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~--~W~~Lfe~ 150 (150)
T d1q79a1 81 LNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEA 150 (150)
T ss_dssp SCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHTCC
T ss_pred CCCCCCCCCCCCcccccccccccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999998877 99999973
No 4
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=2.1e-52 Score=398.16 Aligned_cols=150 Identities=47% Similarity=1.018 Sum_probs=146.6
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCceeecccccCC
Q 004767 205 PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS 284 (732)
Q Consensus 205 P~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~G~ 284 (732)
||.+.||.+||+||+|||+||||+|++||||||+||||||++||+|||+++++||.+||.+|++|+|++||+++++++|.
T Consensus 1 Pn~~~Fr~alR~IK~WAk~RGIYsn~~GylGGI~waILvArvCql~p~a~~~~ll~~FF~~ys~W~Wp~PV~l~~~~~~~ 80 (150)
T d2q66a1 1 PKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGP 80 (150)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCceeccCccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCceeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCC
Q 004767 285 LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP 356 (732)
Q Consensus 285 l~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep 356 (732)
+++++|||+.+.+|+.|+|||+||+||++|+|+|||.+|+++|++||+||++|++++..++. +|++|||.
T Consensus 81 ~~~~~w~p~~~~~d~~~~MpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~--~W~~Lfe~ 150 (150)
T d2q66a1 81 LQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEK 150 (150)
T ss_dssp TTSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHTCC
T ss_pred ccCCCCCCCCCCCCcccccceecCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999998877 99999984
No 5
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.96 E-value=1.2e-30 Score=254.64 Aligned_cols=129 Identities=26% Similarity=0.459 Sum_probs=107.4
Q ss_pred cchhhhccceEEEEeee-cChhhhhhhhhHHHHHHHHHHHHHhhccccceeeccCCCCCCCC------------------
Q 004767 357 FTFFEAYKNYLRIDISA-ENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK------------------ 417 (732)
Q Consensus 357 ~~Ff~~Yk~yL~I~v~a-~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~~hp~P~~f~~~------------------ 417 (732)
++||.+|||||+|++++ .+++++.+|.||||||||.|+.+||+. .++..|||||+.|.+.
T Consensus 1 ~dFF~~YK~YL~V~a~s~~t~e~~~~W~G~VESKlR~LV~~LE~~-~~I~lAHP~pk~F~~~~~~~~~~e~~~v~~~~~~ 79 (178)
T d2q66a3 1 NDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVL-AGIKIAHPFTKPFESSYCCPTEDDYEMIQDKYGS 79 (178)
T ss_dssp CCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTS-TTEEEEEECSSCEEEEEECCSHHHHHHHHHHTTC
T ss_pred CchhhhcccEEEEEEEeCCcHHHhhhhhhHHHHHHHHHHHHhccC-CCeeEEecCCcCcccccccccHHHHHHHhhcccc
Confidence 58999999999999966 689999999999999999999999996 5778899999999420
Q ss_pred --------------------------CCCceEEEEEeeEecCCCCCCCCcccchHHHHHHHHHHHHhhcc--CC-CCcEE
Q 004767 418 --------------------------SKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTL--RK-PGMQI 468 (732)
Q Consensus 418 --------------------------~~~~~~~ffIGL~~~~~~~~~~~~~~Dl~~~v~eF~~~v~~~~~--~~-~~m~i 468 (732)
...|++.|||||+++.. ..++++||+.++++|+..|++|.. +. .+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~fIGL~~~~~---~~~~~lDi~~~i~~F~~~~~~w~~~~~~~~~m~i 156 (178)
T d2q66a3 80 HKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFVNLCRSFNEDYGDHKVFNL 156 (178)
T ss_dssp TTTGGGGTTSBCCTTTC-CCHHHHHSCEEEEEEEEEEEEECC--------CCCCHHHHHHHHHHHHCSCSTTCCTTTEEE
T ss_pred cccccccccccccccccccccccCCCCcceEEEEEEEEEeccC---CCCccccChHHHHHHHHHHHhhhhcccCCCCceE
Confidence 01277899999998642 225689999999999999999964 44 55999
Q ss_pred EEEEecCCCCCCccCC-CCCCC
Q 004767 469 SVAHVTRRNLPNFVFP-GGVRP 489 (732)
Q Consensus 469 ~v~~vkr~~LP~~v~~-~~~~~ 489 (732)
.|+|||+++||++||+ |++||
T Consensus 157 ~I~hVk~~dLP~~Vf~~Ge~rP 178 (178)
T d2q66a3 157 ALRFVKGYDLPDEVFDENEKRP 178 (178)
T ss_dssp EEEEEEGGGCCGGGSCTTCCCC
T ss_pred EEEEechhhCchhhcCCCCCCc
Confidence 9999999999999996 55565
No 6
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.96 E-value=5.1e-30 Score=239.89 Aligned_cols=124 Identities=25% Similarity=0.438 Sum_probs=103.2
Q ss_pred cchhhhccceEEEEeeecChhhhhhhhhHHHHHHHHHHHHHhhccccceeeccCCCCCCCC-----CCCceEEEEEeeEe
Q 004767 357 FTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK-----SKPLYCSYFMGLQR 431 (732)
Q Consensus 357 ~~Ff~~Yk~yL~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~~hp~P~~f~~~-----~~~~~~~ffIGL~~ 431 (732)
.+||.+|||||+|+++|.+++++.+|.||||||||.|+.+||+.. ++..|||||++|.+. ...|+++|||||++
T Consensus 1 ~~FF~~yk~yl~v~~~a~~~~~~~~w~G~vESrlR~Lv~~lE~~~-~i~~a~~~p~~f~~~~~~~~~~~~~~~~fIGL~~ 79 (134)
T d1q79a3 1 PNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE-FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVF 79 (134)
T ss_dssp CCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST-TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEE
T ss_pred CChhhhCceEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHhcccC-CceEEecCCCCcCCcccCCCCCceEEEEEEEEEe
Confidence 479999999999999999999999999999999999999999975 456799999999763 34689999999998
Q ss_pred cCCCCCCCCcccchHHHHHHHHHHHHh----hccCCCCcEEEEEEecCCCCCCcc
Q 004767 432 KQGVPVGEGEQFDIRLTVKEFKQAVSM----YTLRKPGMQISVAHVTRRNLPNFV 482 (732)
Q Consensus 432 ~~~~~~~~~~~~Dl~~~v~eF~~~v~~----~~~~~~~m~i~v~~vkr~~LP~~v 482 (732)
++... .++.++||+.++++|++.+++ +..|++||+|.|+||||+|||+||
T Consensus 80 ~~~~~-~~~~~ldl~~~i~~F~~~~~~~~~~~~~~~~~m~I~v~hVkr~~LP~~v 133 (134)
T d1q79a3 80 KKTEN-SENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL 133 (134)
T ss_dssp C-----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGC
T ss_pred ccCCC-CCCcccccchHHHHHHHHHHHhccccccCCCCCEEEEEEechHHcchhc
Confidence 75432 235679999999999887764 567889999999999999999998
No 7
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=99.90 E-value=5.7e-24 Score=204.08 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHhCCC-----------------------------CCHHHH
Q 004767 208 QNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPN-----------------------------AVPSML 258 (732)
Q Consensus 208 ~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vcQlyPn-----------------------------as~~~L 258 (732)
+++|.|+++||+|||+|||+++..|+||||+|++||+++||..+. .++++|
T Consensus 2 P~~R~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~L 81 (183)
T d2b4va1 2 VAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRL 81 (183)
T ss_dssp TTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHH
T ss_pred cceeeHHHHHHHHHHHcCCCCccCCCchHHHHHHHHHHHHHhcCCCCCCCHHHhccccccccccccccccCCCCCCHHHH
Confidence 568999999999999999999999999999999999999998421 148899
Q ss_pred HHHHHHHhc-cCCCCCceeecccccCCCC---ccccCCCCC-CCCCCCceeEeCCCCCCCCccccc----ChhhHHHHHH
Q 004767 259 VSRFFRVYT-QWRWPNPVLLCAIEEGSLG---LQVWDPRRN-PKDKYHLMPIITPAYPCMNSSYNV----STSTLRIMMD 329 (732)
Q Consensus 259 L~~FF~~Ys-~wdW~~pV~l~~i~~G~l~---~~vWdP~~~-~~dr~hlMpIiTP~~P~~Nsa~NV----s~sTl~vI~~ 329 (732)
|..||+||+ .|||.+-++. +..|..- ...|....+ ...+.+.|+|+||++|.+|++||| +..+++.|++
T Consensus 82 l~~FF~~Y~~~fd~~~~~Is--i~~g~~~~k~~~~~~~~~~~~~~~~~~l~IeDPfd~~~~~~~Nv~r~v~~~~~~~I~~ 159 (183)
T d2b4va1 82 LHGFFIFYAHHFDYEREVVS--LNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQ 159 (183)
T ss_dssp HHHHHHHHHHSSCTTTEEBC--SSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhccccCHHHceee--eccCCccchhhhhccccccCCCCCCcceEEeCCCccccccccchhhhcCHHHHHHHHH
Confidence 999999999 7999997653 4445321 123432211 112346799999999876666665 5568999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccC
Q 004767 330 EFQRGHEICEAMEKNEADVDWDTLFE 355 (732)
Q Consensus 330 EF~RA~~Il~~i~~~~~~~~W~~Lfe 355 (732)
||+||+++|+.+....+ +|..+|+
T Consensus 160 ~f~~a~~~l~~~~~~~~--~~~~i~g 183 (183)
T d2b4va1 160 EFLRAAQCMERFLPTNA--PEKSILG 183 (183)
T ss_dssp HHHHHHHHHHHCCTTTC--SCCGGGC
T ss_pred HHHHHHHHHHHHHhcCC--chhhhcC
Confidence 99999999999887777 8888764
No 8
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.26 E-value=2.2e-06 Score=79.42 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCC-CCceEEe
Q 004767 29 RKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPG-ADIDTLC 107 (732)
Q Consensus 29 ~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~-SDID~lc 107 (732)
+-|.+.|+. +-||++|.+.=.++.+.|+..++. .++.++.+|||+-|.++++ +|||+++
T Consensus 5 ~il~~vl~~--I~Pt~ee~~~~~~~~~~l~~~l~~------------------~~~e~~~~GS~ar~T~l~~~~DiDifv 64 (142)
T d1r89a2 5 EILEKALEL--VIPDEEEVRKGREAEEELRRRLDE------------------LGVEYVFVGSYARNTWLKGSLEIDVFL 64 (142)
T ss_dssp HHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH------------------HTCCEEEEHHHHHTCCCTTCCEEEEEE
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHhhh------------------cCccEEEeccccccccCCCccceeEEE
Confidence 345556654 779999877655555555544432 2467899999999999996 8999999
Q ss_pred ecCCCCCchhhHHHHHHHHHhcC-CCceeeEeecCCcccEEEEEecCeeeeEEee
Q 004767 108 VGPRHATREEDFFGELHQMLTEM-PEVTELHPVPDAHVPVMKFKFSGVSIDLLYA 161 (732)
Q Consensus 108 v~P~~v~r~~dFf~~l~~~L~~~-~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa 161 (732)
+.|....+ +++...+.+.++.. .... +..|.=|-+++.++|++|||.=|
T Consensus 65 ~~~~~~~~-e~l~~~~~~~~~~~~~~~~----~~y~~hpyv~~~~~g~~vDvVP~ 114 (142)
T d1r89a2 65 LFPEEFSK-EELRERGLEIGKAVLDSYE----IRYAEHPYVHGVVKGVEVDVVPC 114 (142)
T ss_dssp EECTTSCH-HHHHHHHHHHHHHHSSSEE----EEESSSEEEEEEETTEEEEEEEE
T ss_pred EeCCCCCH-HHHHHHHHHHHHHhhccce----EeeccCCEEEEEECCeEEEEEEE
Confidence 99987766 36666666666652 2322 22344589999999999999844
No 9
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=98.00 E-value=6.3e-06 Score=71.40 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHh
Q 004767 49 SREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLT 128 (732)
Q Consensus 49 ~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~ 128 (732)
.|++.++.|+.++++.. ..++|+.|||++.|-+.++||||++++.+..... .-+..+...|.
T Consensus 4 i~~e~l~~i~~il~~~~----------------~~~~v~LFGS~arg~~~~~SDiDl~I~~~~~~~~--~~~~~l~~~l~ 65 (100)
T d1no5a_ 4 IKSEELAIVKTILQQLV----------------PDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDF--LARDRLKEAFS 65 (100)
T ss_dssp SCHHHHHHHHHHHHHHC----------------TTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCCH--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----------------CCcEEEEECCCCCCCcCCCCCceEEEEeCCCCCH--HHHHHHHHHHH
Confidence 45677888888887531 2468999999999999999999988887655543 22344555555
Q ss_pred c
Q 004767 129 E 129 (732)
Q Consensus 129 ~ 129 (732)
+
T Consensus 66 ~ 66 (100)
T d1no5a_ 66 E 66 (100)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=97.60 E-value=5.5e-05 Score=75.43 Aligned_cols=88 Identities=20% Similarity=0.370 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeee-ecCCCCCCCCceEEeecCCCCCchhhHHHHHHH
Q 004767 47 AVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSY-RLGVHGPGADIDTLCVGPRHATREEDFFGELHQ 125 (732)
Q Consensus 47 ~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy-~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~ 125 (732)
.+.=..+-++|+.||+.|. .+++||+|||. .+|+|.-+||+|+-|+....-.. .+-....-+
T Consensus 28 F~~~~RAr~QLe~lv~~~~----------------~da~Vf~FGs~Vs~G~wdg~gD~DF~v~dve~~pp-~e~~av~te 90 (259)
T d2b4va2 28 FRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPS-HEVQAKRTD 90 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----------------CCeeEEEccceeEEeeeccccccceeeeecCCCCc-ccchhhhHH
Confidence 3334456678999999983 26999999998 68999999999998887654332 244555666
Q ss_pred HHhcCC-Cc------eeeEeecCCcccEEEEEe
Q 004767 126 MLTEMP-EV------TELHPVPDAHVPVMKFKF 151 (732)
Q Consensus 126 ~L~~~~-~V------~~l~~I~~ArVPIIKf~~ 151 (732)
.|++.. .. .++.++.+|+|||||...
T Consensus 91 ~lRr~g~~~~~~~l~s~lep~~~aRVPviK~~~ 123 (259)
T d2b4va2 91 KLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRF 123 (259)
T ss_dssp HHHHHHHTTSCHHHHTTEEEECSSSSCEEEECC
T ss_pred HHHHhhhhhccccccccccccccccceeEeeec
Confidence 676631 12 378999999999999854
No 11
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.46 E-value=0.00011 Score=62.84 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=28.1
Q ss_pred CcEEEEeeeeecCCCCC-CCCceEEeecCCCCC
Q 004767 83 NAKIFTFGSYRLGVHGP-GADIDTLCVGPRHAT 114 (732)
Q Consensus 83 ~~kI~~FGSy~lGv~~p-~SDID~lcv~P~~v~ 114 (732)
.++|+.|||++-|-+.+ +||||+++|.+....
T Consensus 14 ~~kViLFGS~ArG~~~~~~SDiDllVV~~~~~~ 46 (90)
T d1ylqa1 14 DAEIYLYGSVVEGDYSIGLSDIDVAIVSDVFED 46 (90)
T ss_dssp TCEEEEESHHHHCCSSSCCCSEEEEEECGGGGS
T ss_pred CcEEEEECccccCCCCCCCCccEEEEEeCCCCC
Confidence 58999999999999997 799999999876544
No 12
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=96.72 E-value=0.00048 Score=61.07 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCCCCCC--CCCcChHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCceeecccccCCCCccccC
Q 004767 214 LRCMRFWAKRRGVYSNV--AGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWD 291 (732)
Q Consensus 214 lr~IK~WAK~RgIysn~--~G~LGG~swalLVa~vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~G~l~~~vWd 291 (732)
+|.+|++.|.-|+|++- .++++||..=||++++= +- ...-+--++ |..+++|. ++.+...
T Consensus 6 VrLlK~FlK~igvYGaE~~~~GFSGYl~ElLi~~YG------sF----~~~lk~as~--wk~~~~Id-~~~~~~~----- 67 (115)
T d1r89a1 6 VRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFYG------SF----LETVKNARR--WTRRTVID-VAKGEVR----- 67 (115)
T ss_dssp HHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHHS------SH----HHHHHHHTT--CCTTEEEE-GGGTEEE-----
T ss_pred HHHHHHHHHhcCccchHhhcCcchhHHHHHHHHHHC------CH----HHHHHHHHh--cCCCeEEe-cCCcccc-----
Confidence 68999999999999964 68899999999999872 21 222222344 56666652 3332111
Q ss_pred CCCCCCCCCCceeEeCCCCCCCCcccccChhhHHHHH
Q 004767 292 PRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMM 328 (732)
Q Consensus 292 P~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl~vI~ 328 (732)
....+.|+||.+|..|+|.+||..++..+.
T Consensus 68 -------~~~plvviDPvDp~RNvAAalS~~~~~~Fi 97 (115)
T d1r89a1 68 -------KGEEFFVVDPVDEKRNVAANLSLDNLARFV 97 (115)
T ss_dssp -------ECSSCEEEETTEEEEETTTTCCHHHHHHHH
T ss_pred -------cCCCeEEeCCCCCcchHHHHcCHHHHHHHH
Confidence 124689999999999999999988766544
No 13
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=96.62 E-value=0.0013 Score=56.40 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=26.4
Q ss_pred cEEEEeeeeecCCCCCCCCceEEeecCCCCC
Q 004767 84 AKIFTFGSYRLGVHGPGADIDTLCVGPRHAT 114 (732)
Q Consensus 84 ~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~ 114 (732)
.+++.|||++.|-+.++||||+++......+
T Consensus 26 ~~v~lFGS~arg~~~~~SDIDi~V~~~~~~~ 56 (98)
T d1wota_ 26 VRVRVFGSVARGEAREDSDLDLLVAFEEGRT 56 (98)
T ss_dssp SSCEECSHHHHTCCCTTCCCEEEECCCSSCC
T ss_pred cEEEEECCccCCCCCCCCCceEEEEeCCCCC
Confidence 3599999999999999999998887765544
No 14
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.95 E-value=0.027 Score=53.24 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=71.3
Q ss_pred cCcEEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEE------e---c
Q 004767 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFK------F---S 152 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~------~---~ 152 (732)
.+.++..-||||=|-. -.+|||+|+..|....- ..++..+...|++..-+++.........--.|+. . .
T Consensus 23 ~~~~~~i~GSyRRgk~-~~gDIDili~~~~~~~~-~~~l~~~~~~l~~~g~i~~~l~~~~~~~~~~~~~gi~~l~~~~~~ 100 (190)
T d2bcqa3 23 SGLLCVACGSYRRGKA-TCGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 100 (190)
T ss_dssp TTCEEEECHHHHTTCS-EESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEecccccCCc-ccCCeeEEEecCCchhH-HHHHHHHHHHHHhcCceEEEEeeecccCCcceeEEEEecCCCCCc
Confidence 3688999999998843 35799999888765443 3678889899998766654332211111111211 1 2
Q ss_pred CeeeeEEeeeccccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCC
Q 004767 153 GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAG 232 (732)
Q Consensus 153 GI~iDLsfa~l~~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G 232 (732)
+..|||.++....+ .-.++-+.-+. ...+.++.||+++|..=|-.|
T Consensus 101 ~rrvDi~~~~~~~~------------------------------~~allyfTGs~----~fn~~lR~~A~~~G~~Lne~G 146 (190)
T d2bcqa3 101 HRRLDIIVVPYSEF------------------------------ACALLYFTGSA----HFNRSMRALAKTKGMSLSEHA 146 (190)
T ss_dssp CEEEEEEECCGGGH------------------------------HHHHHHHHCCH----HHHHHHHHHHHHTTCEECSSC
T ss_pred ceeEEEEEcCHHHH------------------------------HHHHHhhcccH----HHHHHHHHHHHHhCCcccccc
Confidence 57899988764211 11122222221 236778999999998777776
Q ss_pred C
Q 004767 233 F 233 (732)
Q Consensus 233 ~ 233 (732)
.
T Consensus 147 L 147 (190)
T d2bcqa3 147 L 147 (190)
T ss_dssp E
T ss_pred C
Confidence 5
No 15
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=95.77 E-value=0.0051 Score=54.89 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=25.3
Q ss_pred cEEEEeeeeecCCCCCCCCceEEeecCC
Q 004767 84 AKIFTFGSYRLGVHGPGADIDTLCVGPR 111 (732)
Q Consensus 84 ~kI~~FGSy~lGv~~p~SDID~lcv~P~ 111 (732)
..|..|||++-|-..|+||||++|+...
T Consensus 32 ~~i~L~GS~arg~~~~~SDiDl~vv~~~ 59 (125)
T d1knya2 32 KAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (125)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred EEEEEECccccCCCCCCCCeEEEEEECC
Confidence 4699999999999999999999998764
No 16
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.41 E-value=0.087 Score=49.41 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=71.3
Q ss_pred cCcEEEEeeeeecCCCCCCCCceEEeecCCCCCc---hhhHHHHHHHHHhcCCCceeeEeecCCccc-EEEEE-------
Q 004767 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATR---EEDFFGELHQMLTEMPEVTELHPVPDAHVP-VMKFK------- 150 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r---~~dFf~~l~~~L~~~~~V~~l~~I~~ArVP-IIKf~------- 150 (732)
.+.++..-||||=|- .-.+|||+|+..|..... ...++..+.+.|.+.+.+.........+.= ++++-
T Consensus 23 ~~~~v~i~GSyRRgk-~~~gDIDilIt~~~~~~~~~~~~~~l~~v~~~l~~~~~i~~~l~~g~~k~~g~~~l~~~~~~~~ 101 (187)
T d2fmpa3 23 SEYIATVCGSFRRGA-ESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 101 (187)
T ss_dssp TTCEEEECHHHHTTC-SEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEEeeecccCC-cccCCccEEEecCCccchhhhhhHHHHHHHHHHHHCCcchhhhhcCCceEEEEEEecCcCcccc
Confidence 467899999999984 556899998887653221 125677888888887777655444333211 11111
Q ss_pred ecCeeeeEEeeeccccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCC
Q 004767 151 FSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNV 230 (732)
Q Consensus 151 ~~GI~iDLsfa~l~~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~ 230 (732)
..+..|||.++....+ .-.++-+.-+. ...|.+++||+++|..=|-
T Consensus 102 ~~~rrvDi~~~~~~~~------------------------------~~all~fTGs~----~fn~~lR~~A~~kG~~Ln~ 147 (187)
T d2fmpa3 102 YPHRRIDIRLIPKDQY------------------------------YCGVLYFTGSD----IFNKNMRAHALEKGFTINE 147 (187)
T ss_dssp CCCEEEEEEECCGGGH------------------------------HHHHHHHHCCH----HHHHHHHHHHHHTTEEECS
T ss_pred CcceEEEEEEcCHHHh------------------------------HHHHHhhcCcH----HHHHHHHHHHHHhcCeEch
Confidence 1257899988764311 11222222221 2357789999999987666
Q ss_pred CCC
Q 004767 231 AGF 233 (732)
Q Consensus 231 ~G~ 233 (732)
.|.
T Consensus 148 ~GL 150 (187)
T d2fmpa3 148 YTI 150 (187)
T ss_dssp SCE
T ss_pred hcC
Confidence 665
No 17
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=94.39 E-value=0.12 Score=47.14 Aligned_cols=57 Identities=7% Similarity=0.093 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHh
Q 004767 209 NFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP---NAVPSMLVSRFFRVY 266 (732)
Q Consensus 209 ~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa~vcQlyP---nas~~~LL~~FF~~Y 266 (732)
..+.|+|.||+|-+.. ......+.+.+|++-+|+++..+.-. ..+.++.+..+.+.-
T Consensus 3 klK~LIRLVKhWy~~~-~~~~~~~lPpsYaLELLtiyAwE~g~~~~~f~~a~gFrtVleLv 62 (146)
T d1px5a1 3 KLKSLIRLVKHWYQTC-KKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELV 62 (146)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhccCCCCCcHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 4577999999999754 23333457899999999999997643 345555555555543
No 18
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.50 E-value=0.37 Score=45.67 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCCCCceEEeecCCCCCc-hhhHHHHHHHHHhcCCCc
Q 004767 55 GRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATR-EEDFFGELHQMLTEMPEV 133 (732)
Q Consensus 55 ~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r-~~dFf~~l~~~L~~~~~V 133 (732)
+.+..+|++.+..+ .+++++..-||||=|-. -.+|||+|+..|....- .......+.+.|++..-+
T Consensus 7 ~~i~~~v~~~~~~~------------~~~~~v~i~GSyRRGk~-tsgDIDili~~~~~~~~~~~~~l~~~~~~l~~~g~i 73 (208)
T d1jmsa4 7 EAVSMLVKEAVVTF------------LPDALVTMTGGFRRGKM-TGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLL 73 (208)
T ss_dssp HHHHHHHHHHHHHH------------CTTCEEEECHHHHTTCS-CBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhc------------CCCcEEEEeeccccCCC-ccCCeeEEEecCCCchhhHHHHHHHHHHHHHhcCce
Confidence 45566666665442 35689999999999963 46799999887765431 123556677777765433
No 19
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=91.77 E-value=0.61 Score=44.37 Aligned_cols=126 Identities=24% Similarity=0.318 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeecCCCCCC-CCceEEe
Q 004767 29 RKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPG-ADIDTLC 107 (732)
Q Consensus 29 ~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~-SDID~lc 107 (732)
.+|.+++.+ .|-|+.+=...=.++++.|...+++ -+-+ |-... -.-.+|.--|||+-|..+++ ||+|+|+
T Consensus 9 ~~Ld~fI~~-~Lqp~~~f~~~~~~avd~i~~fLke----~cf~-~~~~~---v~V~kVvKGGS~gkGTaLr~~SDvDlVv 79 (200)
T d1px5a2 9 RDLDKFIED-HLLPNTCFRTQVKEAIDIVCRFLKE----RCFQ-GTADP---VRVSKVVKGGSSGKGTTLRGRSDADLVV 79 (200)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHH----HTTC-C---C---CEEEEEEEEEEC--------CEEEEEEE
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHH----Hhcc-cCCCC---ceEEEEEeccccCCCcccCCCCcceEEE
Confidence 467778766 6778776655555677777666664 1110 11000 11257899999999999997 8999988
Q ss_pred ecCCCCC------chhhHHHHHHHHHhc-----CCCce-eeEeecCCccc-EEEEEe------cCeeeeEEeeecc
Q 004767 108 VGPRHAT------REEDFFGELHQMLTE-----MPEVT-ELHPVPDAHVP-VMKFKF------SGVSIDLLYARLS 164 (732)
Q Consensus 108 v~P~~v~------r~~dFf~~l~~~L~~-----~~~V~-~l~~I~~ArVP-IIKf~~------~GI~iDLsfa~l~ 164 (732)
.....-. +..+|...+...|.. ..+++ +++. ..-++| .+.|++ .+|++||+=|--+
T Consensus 80 Fls~l~sf~dq~~~~~e~i~ei~~~L~~~~~~~~~~~~~e~~~-~~~~~pral~F~l~~~~~~~~v~vDvLPA~da 154 (200)
T d1px5a2 80 FLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQS-PRRENPRALSFVLSSPQLQQEVEFDVLPAFDA 154 (200)
T ss_dssp EEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECC-C------CCEEEEEETTTTEEEEEEEEEEECS
T ss_pred EecCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCceEEEee-cCccCCcEEEEEEEEcCCCCcEEEEeeEhhhh
Confidence 6543211 112444444444432 23443 2221 222334 344443 3599999966544
No 20
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=80.26 E-value=1.4 Score=39.24 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=33.4
Q ss_pred EEEeeeeecCCCCCC--CCceEEeecCCCCC--chhhHHHHHHHHH-hcCCCceeeE-eecCCcccEEEEEecCeeeeEE
Q 004767 86 IFTFGSYRLGVHGPG--ADIDTLCVGPRHAT--REEDFFGELHQML-TEMPEVTELH-PVPDAHVPVMKFKFSGVSIDLL 159 (732)
Q Consensus 86 I~~FGSy~lGv~~p~--SDID~lcv~P~~v~--r~~dFf~~l~~~L-~~~~~V~~l~-~I~~ArVPIIKf~~~GI~iDLs 159 (732)
|...||.+.|-+.++ ||+|++.++..... .+..+...|.+.| .+.|+-.... +...+....+-+--+|..|||.
T Consensus 24 v~L~GSRan~~~~~D~fsD~Div~~v~d~~~f~~~~~Wl~~fG~~l~~q~pe~~~~~~~~~~~~~~~l~lfeDG~rIDl~ 103 (135)
T d2pbea2 24 VTLEGSRTNRNIPPDNFQDYDISYFVTDVESFKENDQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDGNKLDLT 103 (135)
T ss_dssp EEEC------------CCCEEEEEEESCHHHHHTCSGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETTSCEEEEE
T ss_pred EEEecccCCCCCCCCCCcceeEEEEecCchHhhhCHHHHHHhCchhheEccccccccCcccCCceEEEEEecCCcEEEEE
Confidence 788899999999998 99999888753210 0001122222111 0112111111 1224444433333389999999
Q ss_pred eeecc
Q 004767 160 YARLS 164 (732)
Q Consensus 160 fa~l~ 164 (732)
+..+.
T Consensus 104 l~~~~ 108 (135)
T d2pbea2 104 LIPIR 108 (135)
T ss_dssp EEEGG
T ss_pred EeCHH
Confidence 98864
No 21
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}
Probab=70.01 E-value=1.2 Score=41.06 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=63.7
Q ss_pred CcEEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEe--cCeeeeEEe
Q 004767 83 NAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLY 160 (732)
Q Consensus 83 ~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsf 160 (732)
.-.|.+-||||=|-.+ ..|||+|+.++... ....+...|...+.+.++......+. ...+.. .|+.|||.+
T Consensus 31 ~~~i~~aGSyRRgke~-~gDIDili~~~~~~-----~~~~~l~~l~~~~~i~~~l~~g~~k~-~~~~~~~~~~rrvDi~~ 103 (174)
T d1jqra_ 31 SKNIVAVGSLRREEKM-LNDVDLLIIVPEKK-----LLKHVLPNIRIKGLSFSVKVCGERKC-VLFIEWEKKTYQLDLFT 103 (174)
T ss_dssp GGGEEECHHHHTTCSE-ESCEEEEEEECSST-----THHHHTTTEEESSSEEEEEEECSSEE-EEEEEETTEEEEEEEEE
T ss_pred hcCEEEeeccccCccc-cCCeEEEEecCCHH-----HHHHHHHHHHhCCceEEEeeccCcee-EEEEecCCCcEEEEEEE
Confidence 3469999999999765 46999988877432 23333334444455554433322221 122333 479999999
Q ss_pred eeccccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCC
Q 004767 161 ARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGF 233 (732)
Q Consensus 161 a~l~~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~ 233 (732)
+..... .-.++.+--.. .-.+.++.||+++|..=|-.|.
T Consensus 104 ~~~~~~------------------------------~~aLl~~TGS~----~fn~~lR~~A~~~G~~Lne~GL 142 (174)
T d1jqra_ 104 ALAEEK------------------------------PYAIFHFTGPV----SYLIRIRAALKKKNYKLNQYGL 142 (174)
T ss_dssp EETTHH------------------------------HHHHHHHHCCH----HHHHHHHHHHHTTTEEEETTEE
T ss_pred cCHHHH------------------------------HHHHHHHhccH----HHHHHHHHHHHhhcceeccccC
Confidence 875311 11122222221 2367788999999876666553
No 22
>d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.66 E-value=1e+02 Score=29.46 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=33.5
Q ss_pred ccCcEEEEeeeeecCCCCCCCCceEEeecCCC---------CCchhhHHHHHHHHHhc
Q 004767 81 EANAKIFTFGSYRLGVHGPGADIDTLCVGPRH---------ATREEDFFGELHQMLTE 129 (732)
Q Consensus 81 ~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~---------v~r~~dFf~~l~~~L~~ 129 (732)
..+..|.-.|-+.-+=-.-+||||++.|.+.. ... ..||..+.+.|.+
T Consensus 151 ~~~~~VIamGKlGg~ELny~SDlDLIfvy~~~~~~~~~~~~~~~-~~~~~rla~~l~~ 207 (285)
T d1v4aa2 151 AQPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDN-AQFFTRMGQRLIK 207 (285)
T ss_dssp ECCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCH-HHHHHHHHHHHHH
T ss_pred cCCeEEEecchhcccccccCCCcceEEEecCCCCCCCCcchhHH-HHHHHHHHHHHHH
Confidence 34567888888777777789999999996532 111 3688877766654
No 23
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]}
Probab=27.10 E-value=59 Score=27.90 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=41.0
Q ss_pred cCcEEEEeeeeecCCC---CCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEee-cCCccc-EEEEEecCeee
Q 004767 82 ANAKIFTFGSYRLGVH---GPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPV-PDAHVP-VMKFKFSGVSI 156 (732)
Q Consensus 82 ~~~kI~~FGSy~lGv~---~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I-~~ArVP-IIKf~~~GI~i 156 (732)
.+..-...||+++.+| ...-|||+++ .+ ++ +..+...|++.. ......- ..-..+ ...+...|+.|
T Consensus 20 ~~i~~~i~Gg~A~~~~G~~r~t~DiDi~v-~~------~~-~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~g~~i 90 (157)
T d2fcla1 20 EKVNWVVTGSLSFALQGVPVEVHDIDIQT-DE------EG-AYEIERIFSEFV-SKKVRFSSTEKICSHFGELIIDGIKV 90 (157)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEE-CH------HH-HHHHHHHTGGGE-EEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred CCCCEEEEhHHHHHHCCCCCCCCceeEEE-cc------cC-HHHHHHHHHHhC-cCCCCcccccccccceEEEeeCCeEE
Confidence 3566788899887666 4567999654 22 12 356667777632 1111111 111112 34677799999
Q ss_pred eEEee
Q 004767 157 DLLYA 161 (732)
Q Consensus 157 DLsfa 161 (732)
||...
T Consensus 91 di~~~ 95 (157)
T d2fcla1 91 EIMGD 95 (157)
T ss_dssp EEEEE
T ss_pred EEeCc
Confidence 98653
Done!