Your job contains 1 sequence.
>004769
MSEGNSMASENGTDLSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCS
FAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQA
YMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMS
VRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQ
YDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMAC
FFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKA
EFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPC
QSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESH
AATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSC
HQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTSASTNPLRTTTRDRSEKIQLLE
SMASALVSESLETEERLDVACEQVAMVLNHVKDLPRPIHGMDDIAYACPSHSLILPEVED
TDGIVQSITVGNSHESFTLGKLKERRPRDGVDVSRKRRHCSEPCCRHFGHDASSCPIMGS
DTLNAELLGYL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004769
(731 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2012828 - symbol:FRS11 "FAR1-related sequence ... 1017 2.2e-198 2
TAIR|locus:2182778 - symbol:FRS10 "FAR1-related sequence ... 660 6.8e-117 2
TAIR|locus:2121060 - symbol:FRS5 "FAR1-related sequence 5... 378 1.1e-58 2
TAIR|locus:2014639 - symbol:FRS4 "FAR1-related sequence 4... 327 5.0e-45 2
TAIR|locus:2129665 - symbol:FAR1 "FAR-RED IMPAIRED RESPON... 290 3.2e-44 2
TAIR|locus:2090394 - symbol:FHY3 "far-red elongated hypoc... 477 8.9e-43 1
TAIR|locus:2144930 - symbol:FRS12 "FAR1-related sequence ... 254 6.1e-32 3
TAIR|locus:2016259 - symbol:FRS8 "FAR1-related sequence 8... 235 6.4e-32 2
TAIR|locus:2121003 - symbol:FRS9 "FAR1-related sequence 9... 249 1.9e-28 2
TAIR|locus:2035144 - symbol:FRS6 "FAR1-related sequence 6... 233 3.9e-27 2
TAIR|locus:2082420 - symbol:FRS7 "FAR1-related sequence 7... 273 3.7e-25 2
TAIR|locus:2059304 - symbol:FRS3 "FAR1-related sequence 3... 286 2.0e-24 2
TAIR|locus:2062606 - symbol:FRS2 "FAR1-related sequence 2... 237 4.8e-22 2
TAIR|locus:2079651 - symbol:AT3G07500 "AT3G07500" species... 180 8.9e-13 1
TAIR|locus:2135738 - symbol:AT4G12850 "AT4G12850" species... 140 5.0e-10 2
TAIR|locus:2097543 - symbol:AT3G59470 species:3702 "Arabi... 149 9.1e-08 1
TAIR|locus:2041041 - symbol:AT2G43280 species:3702 "Arabi... 128 1.1e-05 1
>TAIR|locus:2012828 [details] [associations]
symbol:FRS11 "FAR1-related sequence 11" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC005489 InterPro:IPR018289 Pfam:PF10551 HOGENOM:HOG000006468
ProtClustDB:CLSN2687754 EMBL:AF424595 EMBL:BT000486 IPI:IPI00517858
RefSeq:NP_563865.1 UniGene:At.26302 IntAct:Q9SY66 PaxDb:Q9SY66
PRIDE:Q9SY66 EnsemblPlants:AT1G10240.1 GeneID:837563
KEGG:ath:AT1G10240 TAIR:At1g10240 eggNOG:NOG258635
InParanoid:Q9SY66 OMA:IRRHRTE PhylomeDB:Q9SY66
Genevestigator:Q9SY66 Uniprot:Q9SY66
Length = 680
Score = 1017 (363.1 bits), Expect = 2.2e-198, Sum P(2) = 2.2e-198
Identities = 183/306 (59%), Positives = 244/306 (79%)
Query: 15 LSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRT 74
LS DD + EE+P++ LS + N +P++GQ F++ D AYEFY +FAK+CGFSIRRHRT
Sbjct: 21 LSLDDASSTEESPDDNNLSLEAVHNAIPYLGQIFLTHDTAYEFYSTFAKRCGFSIRRHRT 80
Query: 75 RGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPE 134
GKDGVG+G+TRR F CHR G +K +GK QRNR+SSRCGCQAY+RI K + E
Sbjct: 81 EGKDGVGKGLTRRYFVCHRAGNTPIKTLSEGKPQRNRRSSRCGCQAYLRISKLTELGSTE 140
Query: 135 WHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGV 194
W VTGF+N HNHELL+ N+VR LPAY SI+ DK+RI MF+K G+SV+QM+RL+ELEK V
Sbjct: 141 WRVTGFANHHNHELLEPNQVRFLPAYRSISDADKSRILMFSKTGISVQQMMRLLELEKCV 200
Query: 195 KLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHI 254
+ G LPFTE DVRNLLQSF+ ++ + + ID + MC+ +K+K+PNF+++F +D +++LE+I
Sbjct: 201 EPGFLPFTEKDVRNLLQSFKKLDPEDENIDFLRMCQSIKEKDPNFKFEFTLDANDKLENI 260
Query: 255 AWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQS 314
AWSYASS+Q YE FGDA+VFDTTHRL + +M GIWVG++N+G+ CFFGCVLLRDEN++S
Sbjct: 261 AWSYASSIQSYELFGDAVVFDTTHRLSAVEMPLGIWVGVNNYGVPCFFGCVLLRDENLRS 320
Query: 315 FSWSLK 320
+SW+L+
Sbjct: 321 WSWALQ 326
Score = 926 (331.0 bits), Expect = 2.2e-198, Sum P(2) = 2.2e-198
Identities = 185/378 (48%), Positives = 253/378 (66%)
Query: 268 FGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEM 327
FG L+ D L S+ + G N G A +L D NM LKEA+A EM
Sbjct: 308 FGCVLLRD--ENLRSWSWALQAFTGFMN-GKA---PQTILTDHNM-----CLKEAIAGEM 356
Query: 328 PETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNXXXXXXXXXXWSKMVNKYGL 387
P TKHA+ IW ++ K LG Y+DWKAEFYRLY+ W MVN +GL
Sbjct: 357 PATKHALCIWMVVGKFPSWFNAGLGERYNDWKAEFYRLYHLESVEEFELGWRDMVNSFGL 416
Query: 388 REYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVA 447
+HI +LYA R+ W+LP+LR +F AG+ +S+AINAFIQR LSAQ++L FVE+VA
Sbjct: 417 HTNRHINNLYASRSLWSLPYLRSHFLAGMTLTGRSKAINAFIQRFLSAQTRLAHFVEQVA 476
Query: 448 EIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLL 507
+V+F D+A +Q MQ+ LQ I LKTG+P+ESHAA+VLTP+AF KLQE+L++A YAS
Sbjct: 477 VVVDFKDQATEQQTMQQNLQNISLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFQ 536
Query: 508 VDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPD 567
+DEG + V+HHT+ DGG KV W+P + ISCSC FEFSG LCRH LRVLST NCFQ+PD
Sbjct: 537 MDEG-YLVRHHTKLDGGRKVYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQVPD 595
Query: 568 QYLPIRWRNVTSASTNPLRTTTRDRSEKIQLLESMASALVSESLETEERLDVACEQVAMV 627
+YLP+RWR ++++ + R+ D E++QLL+++ S LVSES +++ERLD+A EQ +++
Sbjct: 596 RYLPLRWRRISTSFSKTFRSNAEDHGERVQLLQNLVSTLVSESAKSKERLDIATEQTSIL 655
Query: 628 LNHVKDLPRPIHGMDDIA 645
L+ +++ P + DI+
Sbjct: 656 LSRIREQPVSSLAIRDIS 673
>TAIR|locus:2182778 [details] [associations]
symbol:FRS10 "FAR1-related sequence 10" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 EMBL:AF262043
InterPro:IPR018289 Pfam:PF10551 IPI:IPI00525509 RefSeq:NP_198205.2
UniGene:At.55070 PaxDb:Q9LKR4 EnsemblPlants:AT5G28530.1
GeneID:832948 KEGG:ath:AT5G28530 TAIR:At5g28530 eggNOG:NOG320567
HOGENOM:HOG000006468 OMA:DECAQAF PhylomeDB:Q9LKR4
ProtClustDB:CLSN2687754 Genevestigator:Q9LKR4 Uniprot:Q9LKR4
Length = 685
Score = 660 (237.4 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
Identities = 134/311 (43%), Positives = 197/311 (63%)
Query: 23 IEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGR 82
IE P T SQ +V P++GQ F + D A+E+Y +FA++ GFSIR+ R+ +G
Sbjct: 39 IESTPTPT--SQYDTV-FTPYVGQIFTTDDEAFEYYSTFARKSGFSIRKARSTESQNLG- 94
Query: 83 GVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSN 142
V RRDF C+R GF Q + + + R RKS RCGC + + K V V W+V+ FSN
Sbjct: 95 -VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDGKLYLTKEVVDGVSHWYVSQFSN 153
Query: 143 VHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFT 202
VHNHELL+ ++VRLLPAY I D+ RI + +KAG V ++++L+ELEKGV G LPF
Sbjct: 154 VHNHELLEDDQVRLLPAYRKIQQSDQERILLLSKAGFPVNRIVKLLELEKGVVSGQLPFI 213
Query: 203 EIDVRNLLQS----------FRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLE 252
E DVRN +++ F R+ D ++L+ CK + +++ +F YD D + ++E
Sbjct: 214 EKDVRNFVRACKKSVQENDAFMTEKRESDTLELLECCKGLAERDMDFVYDCTSDENQKVE 273
Query: 253 HIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENM 312
+IAW+Y SV+ Y FGD +VFDT++R Y +L G++ G+DN+G A GCVLL+DE+
Sbjct: 274 NIAWAYGDSVRGYSLFGDVVVFDTSYRSVPYGLLLGVFFGIDNNGKAMLLGCVLLQDESC 333
Query: 313 QSFSWSLKEAV 323
+SF+W+L+ V
Sbjct: 334 RSFTWALQTFV 344
Score = 512 (185.3 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
Identities = 105/315 (33%), Positives = 178/315 (56%)
Query: 319 LKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNXXXXXXXXXXW 378
LK+A+ EMP T H V++ HI++KL+ LGS Y++++A F L W
Sbjct: 363 LKDAIGREMPNTNHVVFMSHIVSKLASWFSQTLGSHYEEFRAGFDMLCRAGNVDEFEQQW 422
Query: 379 SKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQ 438
+V ++GL +H LY+ R W +R +F A ++ + +I++F++R++ +
Sbjct: 423 DLLVTRFGLVPDRHAALLYSCRASWLPCCIREHFVAQTMTSEFNLSIDSFLKRVVDGATC 482
Query: 439 LDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELL 498
+ +E A ++ + A+ +++ + LKT P+E HA +LTPYAF LQ E++
Sbjct: 483 MQLLLEESA--LQVSAAASLAKQILPRFTYPSLKTCMPMEDHARGILTPYAFSVLQNEMV 540
Query: 499 MAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLS 558
++ QYA + G F V H+ + +G C VIW P E I CSC +FE SGILCRH LRVL+
Sbjct: 541 LSVQYAVAEMANGPFIVHHYKKMEGECCVIWNPENEEIQCSCKEFEHSGILCRHTLRVLT 600
Query: 559 TDNCFQIPDQYLPIRWRNVTSASTNPLRTTTRDRSEKIQLLESMASALVSESLETEERLD 618
NCF IP+QY +RWR + + + Q S+ L++ES+ +++RLD
Sbjct: 601 VKNCFHIPEQYFLLRWRQESPHVATENQNGQGIGDDSAQTFHSLTETLLTESMISKDRLD 660
Query: 619 VACEQVAMVLNHVKD 633
A ++++++++ V++
Sbjct: 661 YANQELSLLIDRVRN 675
>TAIR|locus:2121060 [details] [associations]
symbol:FRS5 "FAR1-related sequence 5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0008270 EMBL:AL035538
EMBL:AL161593 InterPro:IPR018289 Pfam:PF10551 HOGENOM:HOG000241939
EMBL:AY136457 IPI:IPI00529649 PIR:T05645 RefSeq:NP_195531.1
UniGene:At.31195 UniGene:At.48951 PRIDE:Q9SZL8
EnsemblPlants:AT4G38180.1 GeneID:829974 KEGG:ath:AT4G38180
TAIR:At4g38180 eggNOG:NOG236180 InParanoid:Q9SZL8 OMA:RNNRQKS
PhylomeDB:Q9SZL8 ProtClustDB:CLSN2685396 Genevestigator:Q9SZL8
Uniprot:Q9SZL8
Length = 788
Score = 378 (138.1 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 88/282 (31%), Positives = 151/282 (53%)
Query: 38 VNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFP 97
++L P+ G F S++AA FY S+A++ GFS R +R G + +R F C + GF
Sbjct: 69 LDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDG-AIIQRQFVCAKEGFR 127
Query: 98 QM--KPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVR 155
M K + D +++R R +R GC+A + + + D +W V+GF HNHEL+ ++V
Sbjct: 128 NMNEKRTKDREIKRPRTITRVGCKASLSVKMQ---DSGKWLVSGFVKDHNHELVPPDQVH 184
Query: 156 LLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRN 215
L ++ I+ KT I AGM R+++ + E G + + FTE+D RN +++ R
Sbjct: 185 CLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYG-GISKVGFTEVDCRNYMRNNRQ 243
Query: 216 VNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFD 275
+ + + L+ ++M NPNF Y + + ++ W+ ++ + FGD + FD
Sbjct: 244 KSIEGEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTFD 303
Query: 276 TTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSW 317
TT+R + Y + F + G+++HG FGC + +E SF W
Sbjct: 304 TTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVW 345
Score = 303 (111.7 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 87/320 (27%), Positives = 147/320 (45%)
Query: 268 FGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEM 327
FG A + + T S+ LF W+ M+ + D + ++ A+
Sbjct: 330 FGCAFIINETEA--SFVWLFNTWLA----AMSAHPPVSITTDHDAV-----IRAAIMHVF 378
Query: 328 PETKHAVYIWHILAKLSDSLP-TFLGSSYDDWKAEFYRLYNXXXXXXXXXX-WSKMVNKY 385
P +H WHIL K + L FL + ++++F++ N W +++KY
Sbjct: 379 PGARHRFCKWHILKKCQEKLSHVFL--KHPSFESDFHKCVNLTESVEDFERCWFSLLDKY 436
Query: 386 GLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVER 445
LR+++ + ++Y+ R W +LR FFA + +S++IN++ ++A + L +F +
Sbjct: 437 ELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKL 496
Query: 446 VAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQY-A 504
+ +E K LKT SP+E A+ + T F + QEEL+ + A
Sbjct: 497 YEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASELYTRKLFMRFQEELVGTLTFMA 556
Query: 505 SLLVDEG---CFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDN 561
S D+G +QV + E V + + +CSC FEFSGI+CRH+L V N
Sbjct: 557 SKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVFRVTN 616
Query: 562 CFQIPDQYLPIRW-RNVTSA 580
+P Y+ RW RN S+
Sbjct: 617 LLTLPPYYILKRWTRNAKSS 636
>TAIR|locus:2014639 [details] [associations]
symbol:FRS4 "FAR1-related sequence 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC009978 EMBL:AC012394 HOGENOM:HOG000090708 InterPro:IPR018289
Pfam:PF10551 EMBL:BT010456 EMBL:AK221406 IPI:IPI00535818
IPI:IPI00657192 PIR:G96790 RefSeq:NP_001031286.1 RefSeq:NP_177759.1
UniGene:At.34672 PaxDb:Q6NQJ7 PRIDE:Q6NQJ7 GeneID:843965
KEGG:ath:AT1G76320 TAIR:At1g76320 eggNOG:NOG261993
InParanoid:Q9SGQ3 OMA:KIGCKAS ProtClustDB:CLSN2682748
Genevestigator:Q6NQJ7 Uniprot:Q6NQJ7
Length = 732
Score = 327 (120.2 bits), Expect = 5.0e-45, Sum P(2) = 5.0e-45
Identities = 86/276 (31%), Positives = 132/276 (47%)
Query: 305 VLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDD--WKAEF 362
V+L D+N ++K A+A +PET+H +WH+L +L +L + S + D K F
Sbjct: 274 VMLTDQNN-----AIKAAIAAVLPETRHCYCLWHVLDQLPRNLDYW--SMWQDTFMKKLF 326
Query: 363 YRLYNXXXXXXXXXXWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQS 422
+Y W K+++K+ LR+ + SLY R FWA F+R FAGL C+S
Sbjct: 327 KCIYRSWSEEEFDRRWLKLIDKFHLRDVPWMRSLYEERKFWAPTFMRGITFAGLSMRCRS 386
Query: 423 EAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAA 482
E++N+ R + ++ L F+E ++E K + LK+ SP E
Sbjct: 387 ESVNSLFDRYVHPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPELKSPSPFEKQML 446
Query: 483 TVLTPYAFGKLQEELLMAPQ-YASLLVDEGC-FQVKHHTETDGGCKVIWIPCQEHISCSC 540
V + F + Q E+L A + + +EG + VK + + V W + I CSC
Sbjct: 447 LVYSHEIFRRFQLEVLGAAACHLTKESEEGTTYSVKDFDD-EQKYLVDWDEFKSDIYCSC 505
Query: 541 HQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRN 576
FE+ G LCRH + VL F IP Y+ RW N
Sbjct: 506 RSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQRWTN 541
Score = 227 (85.0 bits), Expect = 5.0e-45, Sum P(2) = 5.0e-45
Identities = 75/292 (25%), Positives = 135/292 (46%)
Query: 48 FVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKM 107
F + + AY FY +AK GF + +R + + F+C R G Q SDD
Sbjct: 3 FETHEDAYLFYKDYAKSVGFGTAKLSSR-RSRASKEFIDAKFSCIRYGSKQQ--SDDAI- 58
Query: 108 QRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDD 167
R S + GC+A M + +R D +W+V F HNH+LL + ++ +
Sbjct: 59 -NPRASPKIGCKASMHVKRRPD---GKWYVYSFVKEHNHDLLP-EQAHYFRSHRN----- 108
Query: 168 KTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDY-DAIDLI 226
T + + + ++ L + + L F + +RN R + D DA L+
Sbjct: 109 -TELVKSNDSRLRRKKNTPLTDCKHLSAYHDLDFIDGYMRNQHDKGRRLVLDTGDAEILL 167
Query: 227 AMCKKMKDKNPNFQY--DFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYD 284
+M+++NP F + DF D + L ++ W A ++ Y++F D + F+T++ + Y
Sbjct: 168 EFLMRMQEENPKFFFAVDFSED--HLLRNVFWVDAKGIEDYKSFSDVVSFETSYFVSKYK 225
Query: 285 MLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYI 336
+ ++VG+++H GC LL D+ + ++ W L ++ V M K V +
Sbjct: 226 VPLVLFVGVNHHVQPVLLGCGLLADDTVYTYVW-LMQSWLVAMGGQKPKVML 276
>TAIR|locus:2129665 [details] [associations]
symbol:FAR1 "FAR-RED IMPAIRED RESPONSE 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=IMP] [GO:0010017 "red or far-red
light signaling pathway" evidence=IMP] [GO:0010018 "far-red light
signaling pathway" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0010218 "response
to far red light" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA;IDA] [GO:0042753
"positive regulation of circadian rhythm" evidence=IMP] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010212
"response to ionizing radiation" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0048522
"positive regulation of cellular process" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634
GO:GO:0045893 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003700 EMBL:AL161540 EMBL:Z97337 GO:GO:0010018
GO:GO:0042753 PIR:F71414 PIR:T02124 EMBL:AF159587 IPI:IPI00546816
RefSeq:NP_567455.4 UniGene:At.11570 IntAct:Q9SWG3 STRING:Q9SWG3
PaxDb:Q9SWG3 PRIDE:Q9SWG3 EnsemblPlants:AT4G15090.1 GeneID:827173
KEGG:ath:AT4G15090 TAIR:At4g15090 eggNOG:NOG306101
HOGENOM:HOG000090708 InParanoid:Q9SWG3 OMA:LNLMEPP PhylomeDB:Q9SWG3
ProtClustDB:CLSN2716659 Genevestigator:Q9SWG3 InterPro:IPR018289
Pfam:PF10551 Uniprot:Q9SWG3
Length = 827
Score = 290 (107.1 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
Identities = 96/375 (25%), Positives = 166/375 (44%)
Query: 269 GDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMP 328
G ALV D + ++++ L W+ M V+L D++ F L AV+ +P
Sbjct: 307 GCALVADES--METFVWLIKTWL----RAMGGRAPKVILTDQD--KF---LMSAVSELLP 355
Query: 329 ETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYR-LYNXXXXXXXXXXWSKMVNKYGL 387
T+H +WH+L K+ + + ++++ +F + ++ W KMV+++GL
Sbjct: 356 NTRHCFALWHVLEKIPEYFSHVM-KRHENFLLKFNKCIFRSWTDDEFDMRWWKMVSQFGL 414
Query: 388 REYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVA 447
+ + L+ R W F+ F AG+ + +SE++N+F + + + L F+ +
Sbjct: 415 ENDEWLLWLHEHRQKWVPTFMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEFLRQYG 474
Query: 448 EIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELL--MAPQYAS 505
I++ + ++ LK+ SP E AT T F K Q E+L +A
Sbjct: 475 VILQNRYEEESVADFDTCHKQPALKSPSPWEKQMATTYTHTIFKKFQVEVLGVVACHPRK 534
Query: 506 LLVDEGC--FQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCF 563
DE F+V+ E D V W + + C C FE+ G LCRH L +L
Sbjct: 535 EKEDENMATFRVQD-CEKDDDFLVTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFA 593
Query: 564 QIPDQYLPIRWRNVTSASTNPLRTTTRDRSE-KIQL---LESMASALVSESLETEERLDV 619
IP QY+ RW A + L D+ + ++Q L S A+ L E +EE ++
Sbjct: 594 SIPPQYILKRWTK--DAKSGVLAGEGADQIQTRVQRYNDLCSRATELSEEGCVSEENYNI 651
Query: 620 ACEQVAMVLNHVKDL 634
A + L + D+
Sbjct: 652 ALRTLVETLKNCVDM 666
Score = 261 (96.9 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
Identities = 81/309 (26%), Positives = 137/309 (44%)
Query: 16 SQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGF--SIRRHR 73
S D G ++E + ++L P G F + +AAY FY +AK GF SI+ R
Sbjct: 25 SNRDIGIVDEFNIGGDVGFSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSR 84
Query: 74 TRGKDGVGRGVTRRDFTCHRGGF-PQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDV 132
K + F C R G P+ + S G R + C+A M + +R D
Sbjct: 85 RSKKT---KDFIDAKFACSRYGVTPESESS--GSSSRRSTVKKTDCKASMHVKRRPD--- 136
Query: 133 PEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEK 192
+W + F HNHELL ++ +K I + ++M M +
Sbjct: 137 GKWIIHEFVKDHNHELLPALAYHFR-IQRNVKLAEKNNIDILHAVSERTKKMYVEMSRQS 195
Query: 193 GVKLGCLPFTEIDVRNLLQSFRNVN-RDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRL 251
G + DV + + R + + D+ L+ K++K +NP F Y ++ RL
Sbjct: 196 GGYKNIGSLLQTDVSSQVDKGRYLALEEGDSQVLLEYFKRIKKENPKFFYAIDLNEDQRL 255
Query: 252 EHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDEN 311
++ W+ A S Y +F D + FDTT+ + + +++G+++H GC L+ DE+
Sbjct: 256 RNLFWADAKSRDDYLSFNDVVSFDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADES 315
Query: 312 MQSFSWSLK 320
M++F W +K
Sbjct: 316 METFVWLIK 324
>TAIR|locus:2090394 [details] [associations]
symbol:FHY3 "far-red elongated hypocotyls 3" species:3702
"Arabidopsis thaliana" [GO:0004553 "hydrolase activity, hydrolyzing
O-glycosyl compounds" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009585 "red, far-red light phototransduction" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IMP] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010017 "red or far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0042753 "positive regulation of circadian rhythm"
evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0009639 "response to red or far red light"
evidence=RCA] InterPro:IPR001000 InterPro:IPR006564
InterPro:IPR007527 PROSITE:PS50966 SMART:SM00575 INTERPRO:IPR004330
Pfam:PF03101 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0045893 GO:GO:0046872 GO:GO:0005975 GO:GO:0007623
GO:GO:0004553 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0010218 GO:GO:0009585 GO:GO:0042753 HOGENOM:HOG000090708
InterPro:IPR018289 Pfam:PF10551 EMBL:AP001306 IPI:IPI00519965
RefSeq:NP_001118673.1 RefSeq:NP_188856.2 UniGene:At.27725
STRING:Q9LIE5 PaxDb:Q9LIE5 PRIDE:Q9LIE5 EnsemblPlants:AT3G22170.1
EnsemblPlants:AT3G22170.2 GeneID:821781 KEGG:ath:AT3G22170
TAIR:At3g22170 eggNOG:NOG45392 InParanoid:Q9LIE5 OMA:ITHAERV
PhylomeDB:Q9LIE5 ProtClustDB:PLN03097 Genevestigator:Q9LIE5
Uniprot:Q9LIE5
Length = 839
Score = 477 (173.0 bits), Expect = 8.9e-43, P = 8.9e-43
Identities = 178/711 (25%), Positives = 316/711 (44%)
Query: 5 NSMASENGTDLSQDDTGTIEENPEETI--------LSQQTS-VNLVPFIGQRFVSQDAAY 55
N + +E D+ + + ++E N ++++ L + T +NL P G F S AY
Sbjct: 24 NVLHNEEDMDIGKIEDVSVEVNTDDSVGMGVPTGELVEYTEGMNLEPLNGMEFESHGEAY 83
Query: 56 EFYCSFAKQCGFSI-----RRHRTR-----GKDGVGRGVTRRDF--TCHRGGFPQMKPSD 103
FY +++ GF+ RR +T K R T+R++ + +R Q K D
Sbjct: 84 SFYQEYSRAMGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSFNRPRARQSK-QD 142
Query: 104 DGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSI 163
M R ++ C+A M + +R D +W + F HNHELL V
Sbjct: 143 PENMAGRRTCAKTDCKASMHVKRRPD---GKWVIHSFVREHNHELLPAQAV--------- 190
Query: 164 TPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDY-DA 222
++TR A A +Q E + + L + D ++ + R ++ + D
Sbjct: 191 --SEQTRKIYAAMA----KQFA---EYKTVISL------KSDSKSSFEKGRTLSVETGDF 235
Query: 223 IDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDS 282
L+ +M+ N NF Y + R++++ W A S Y +F D + DTT+ +
Sbjct: 236 KILLDFLSRMQSLNSNFFYAVDLGDDQRVKNVFWVDAKSRHNYGSFCDVVSLDTTYVRNK 295
Query: 283 YDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLK-----------EAVAVEM---- 327
Y M I+VG++ H GC L+ DE+ ++SW ++ + + E+
Sbjct: 296 YKMPLAIFVGVNQHYQYMVLGCALISDESAATYSWLMETWLRAIGGQAPKVLITELDVVM 355
Query: 328 --------PETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYR-LYNXXXXXXXXXXW 378
P T+H +++WH+L K+S++L + +D++ +F + +Y W
Sbjct: 356 NSIVPEIFPNTRHCLFLWHVLMKVSENLGQVV-KQHDNFMPKFEKCIYKSGKDEDFARKW 414
Query: 379 SKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQ 438
K + ++GL++ + + SLY R WA ++ AG+ + ++++INAF + + ++
Sbjct: 415 YKNLARFGLKDDQWMISLYEDRKKWAPTYMTDVLLAGMSTSQRADSINAFFDKYMHKKTS 474
Query: 439 LDRFVERVAEIVEFNDRAATKQKMQRKL--QKICLKTGSPIESHAATVLTPYAFGKLQEE 496
+ FV +V + V DR + K ++ ++ +K+ SP E + V TP F K Q E
Sbjct: 475 VQEFV-KVYDTV-LQDRCEEEAKADSEMWNKQPAMKSPSPFEKSVSEVYTPAVFKKFQIE 532
Query: 497 LLMA----PQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRH 552
+L A P+ + F+V+ E + V W + +SC C FE+ G LCRH
Sbjct: 533 VLGAIACSPREENRDATCSTFRVQDF-ENNQDFMVTWNQTKAEVSCICRLFEYKGYLCRH 591
Query: 553 VLRVLSTDNCFQIPDQYLPIRW-RNVTSA--STNPLRTTTRDRSEKIQLLESMASALVSE 609
L VL + IP QY+ RW ++ S S P + TR L E A L E
Sbjct: 592 TLNVLQCCHLSSIPSQYILKRWTKDAKSRHFSGEPQQLQTRLLRYN-DLCER-ALKLNEE 649
Query: 610 SLETEERLDVACEQVAMVLNHVKDLPRPIHGMDDIAYACPSHSLILPEVED 660
+ ++E ++A + + + + + D+ + P+ LI E ED
Sbjct: 650 ASLSQESYNIAFLAIEGAIGNCAGINTSGRSLPDVVTS-PTQGLISVE-ED 698
>TAIR|locus:2144930 [details] [associations]
symbol:FRS12 "FAR1-related sequence 12" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC068655
InterPro:IPR018289 Pfam:PF10551 IPI:IPI00546450 RefSeq:NP_197397.1
UniGene:At.22319 UniGene:At.72702 PaxDb:Q3E7I5 PRIDE:Q3E7I5
EnsemblPlants:AT5G18960.1 GeneID:832014 KEGG:ath:AT5G18960
TAIR:At5g18960 eggNOG:NOG292373 HOGENOM:HOG000112649
InParanoid:Q3E7I5 OMA:GSANEAC PhylomeDB:Q3E7I5
ProtClustDB:CLSN2686747 Genevestigator:Q3E7I5 Uniprot:Q3E7I5
Length = 788
Score = 254 (94.5 bits), Expect = 6.1e-32, Sum P(3) = 6.1e-32
Identities = 79/301 (26%), Positives = 129/301 (42%)
Query: 319 LKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYR-LYNXXXXXXXXXX 377
+++A+ P H W I K ++L F ++K E+ + +Y
Sbjct: 470 IQQALVQVFPGAHHRYSAWQIREKERENLIPFPS----EFKYEYEKCIYQTQTIVEFDSV 525
Query: 378 WSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQS 437
WS ++NKYGLR+ + +Y R W +LR FFAG+ P I F L A +
Sbjct: 526 WSALINKYGLRDDVWLREIYEQRENWVPAYLRASFFAGI--PING-TIEPFFGASLDALT 582
Query: 438 QLDRFVERVAEIVEFNDRAATKQKMQR-KLQKICLKTGSPIESHAATVLTPYAFGKLQEE 496
L F+ R + +E K+ LQ L+T P+E + T F Q E
Sbjct: 583 PLREFISRYEQALEQRREEERKEDFNSYNLQPF-LQTKEPVEEQCRRLYTLTVFRIFQNE 641
Query: 497 LLMAPQYASLLV-DEGC---FQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRH 552
L+ + Y L +EG F V+ V + + SCSC FE G+LCRH
Sbjct: 642 LVQSYNYLCLKTYEEGAISRFLVRKCGNESEKHAVTFSASNLNSSCSCQMFEHEGLLCRH 701
Query: 553 VLRVLSTDNCFQIPDQYLPIRW-RNVTSASTNPLRTTTRDRSEKIQLLESMASALVSESL 611
+L+V + + ++P +Y+ RW +N + + + K ++ S+ A S+ +
Sbjct: 702 ILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDMESGVSAQDLKALMVWSLREA-ASKYI 760
Query: 612 E 612
E
Sbjct: 761 E 761
Score = 127 (49.8 bits), Expect = 6.1e-32, Sum P(3) = 6.1e-32
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 225 LIAMCKKMKDKNPNFQYDFKMDGHN-RLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSY 283
L+ + + ++ F Y ++D +N I W+ + + FGD++VFDT++R SY
Sbjct: 352 LLDYFQSRQTEDMGFFYAVELDVNNGSCMSIFWADSRARFACSQFGDSVVFDTSYRKGSY 411
Query: 284 DMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSW 317
+ F +G ++H GC ++ DE+ ++F W
Sbjct: 412 SVPFATIIGFNHHRQPVLLGCAMVADESKEAFLW 445
Score = 99 (39.9 bits), Expect = 6.1e-32, Sum P(3) = 6.1e-32
Identities = 36/110 (32%), Positives = 52/110 (47%)
Query: 21 GTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRT-RGKDG 79
G + ++ +T ++ + P+ G F S + A +FY ++A+ GF +R + R K
Sbjct: 191 GEVSDDHHQTQQAKAVT-GTEPYAGLEFGSANEACQFYQAYAEVVGFRVRIGQLFRSK-- 247
Query: 80 VGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVD 129
V +T R F C R GF PS R GC AYMRI KR D
Sbjct: 248 VDGSITSRRFVCSREGFQH--PS------------RMGCGAYMRI-KRQD 282
Score = 96 (38.9 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 42 PFIGQRFVSQDAAYEFYCSFAKQCGFSIRR---HRTRGKDGVGRGVTRRDFTCHRGGFPQ 98
P++G F + + A EFY ++A + GF +R +R+R DG V+ R F C + GF
Sbjct: 43 PYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSR-TDGT---VSSRRFVCSKEGF-- 96
Query: 99 MKPSDDGKMQRNRKSSRCGCQAYMRIVKR 127
Q N SR GC A++R+ +R
Sbjct: 97 ---------QLN---SRTGCTAFIRVQRR 113
Score = 71 (30.1 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 113 SSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHEL 148
+SR GC A++R+ +R D +W + HNHEL
Sbjct: 99 NSRTGCTAFIRVQRR---DTGKWVLDQIQKEHNHEL 131
Score = 70 (29.7 bits), Expect = 6.2e-29, Sum P(3) = 6.2e-29
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 114 SRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHEL 148
SR GC AYMRI KR D W V + HNH+L
Sbjct: 268 SRMGCGAYMRI-KRQDSG--GWIVDRLNKDHNHDL 299
>TAIR|locus:2016259 [details] [associations]
symbol:FRS8 "FAR1-related sequence 8" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC009322 EMBL:AC011717 InterPro:IPR018289 Pfam:PF10551
HOGENOM:HOG000112651 IPI:IPI00534750 PIR:E96831 RefSeq:NP_178118.2
UniGene:At.52575 PRIDE:Q9S793 EnsemblPlants:AT1G80010.1
GeneID:844341 KEGG:ath:AT1G80010 TAIR:At1g80010 eggNOG:NOG311954
InParanoid:Q9S793 OMA:FAIRVKS Genevestigator:Q9S793 Uniprot:Q9S793
Length = 725
Score = 235 (87.8 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 84/309 (27%), Positives = 136/309 (44%)
Query: 17 QDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHR--T 74
+++TG +EN +++ + P G F S D AY FY S+A++ GF+IR T
Sbjct: 74 EEETGC-DEN---AFANEKCLMAPPPTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWT 129
Query: 75 RGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPE 134
+ RG C+ GF +K + RK +R GCQA +R+ + + FD
Sbjct: 130 KRNSKEKRGAV---LCCNCQGFKLLKDAHS-----RRKETRTGCQAMIRL-RLIHFD--R 178
Query: 135 WHVTGFSNVHNHEL---LKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELE 191
W V HNH N + S +P KT + ++ R + L+
Sbjct: 179 WKVDQVKLDHNHSFDPQRAHNSKSHKKSSSSASPATKTNPEPPPHVQVRTIKLYRTLALD 238
Query: 192 KGVKLGC-LPFTEIDVRNL--LQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGH 248
LG L E +L QS R + L +++ +PNF Y +
Sbjct: 239 TPPALGTSLSSGETSDLSLDHFQSSRRLELRGGFRALQDFFFQIQLSSPNFLYLMDLADD 298
Query: 249 NRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLR 308
L ++ W A + Y FGD L+FDTT ++Y++ +VG+++HG GC LL
Sbjct: 299 GSLRNVFWIDARARAAYSHFGDVLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLA 358
Query: 309 DENMQSFSW 317
D++ +++ W
Sbjct: 359 DQSFETYVW 367
Score = 200 (75.5 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 82/334 (24%), Positives = 136/334 (40%)
Query: 318 SLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRL-YNXXXXXXXXX 376
+++ AV+ P H + + H+L + S+ S D + R+ Y
Sbjct: 391 AMRTAVSEVFPRAHHRLSLTHVLHNICQSVVQLQDS--DLFPMALNRVVYGCLKVEEFET 448
Query: 377 XWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLS-PCQSEAINAFIQRILSA 435
W +M+ ++G+ + I ++ R WA +L+ F AG L+ P + A +
Sbjct: 449 AWEEMIIRFGMTNNETIRDMFQDRELWAPVYLKDTFLAGALTFPLGNVAAPFIFSGYVHE 508
Query: 436 QSQLDRFVERVAEIVEFNDRAATKQKM--QRKLQKIC-LKTGSPIESHAATVLTPYAFGK 492
+ L F+E F D+ T++ + L+ I LKT P ES A V T F +
Sbjct: 509 NTSLREFLEGYES---FLDKKYTREALCDSESLKLIPKLKTTHPYESQMAKVFTMEIFRR 565
Query: 493 LQEEL-LMAPQYASLLVDEG----CFQVKHHTETDG--GCKVIW---IPCQEHISCSCHQ 542
Q+E+ M+ + V + VK E D +VI+ Q C C
Sbjct: 566 FQDEVSAMSSCFGVTQVHSNGSASSYVVKER-EGDKVRDFEVIYETSAAAQVRCFCVCGG 624
Query: 543 FEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTS----ASTNPLRTTTRDRSEKIQL 598
F F+G CRHVL +LS + ++P QY+ RWR A R + + +
Sbjct: 625 FSFNGYQCRHVLLLLSHNGLQEVPPQYILQRWRKDVKRLYVAEFGSGRVDIMNPDQWYEH 684
Query: 599 LESMASALVSESLETEERLDVACEQVAMVLNHVK 632
L A +V + + ++E A E N V+
Sbjct: 685 LHRRAMQVVEQGMRSKEHCRAAWEAFRECANKVQ 718
>TAIR|locus:2121003 [details] [associations]
symbol:FRS9 "FAR1-related sequence 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 EMBL:AL035538 EMBL:AL161593 InterPro:IPR018289
Pfam:PF10551 HOGENOM:HOG000241939 UniGene:At.31195 UniGene:At.48951
EMBL:BX827635 EMBL:AK229615 IPI:IPI00517549 PIR:T05644
RefSeq:NP_195530.2 PaxDb:Q9SZL7 PRIDE:Q9SZL7
EnsemblPlants:AT4G38170.1 GeneID:829973 KEGG:ath:AT4G38170
TAIR:At4g38170 eggNOG:NOG320990 InParanoid:Q9SZL7 OMA:RCEVYRA
Genevestigator:Q9SZL7 Uniprot:Q9SZL7
Length = 545
Score = 249 (92.7 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 378 WSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQS 437
W +V +Y + + + S+Y R W F+R F+ L + S +N+F Q + A +
Sbjct: 194 WDSIVRRYYMEDNDWLQSIYNARQQWVRVFIRDTFYGELSTNEGSSILNSFFQGFVDAST 253
Query: 438 QLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEEL 497
+ +++ + ++ K + +KT SP+E AA++ T AF K QEE
Sbjct: 254 TMQMLIKQYEKAIDSWREKELKADYEATNSTPVMKTPSPMEKQAASLYTRAAFIKFQEEF 313
Query: 498 LMAPQY-ASLLVDEGC---FQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHV 553
+ A+++ D G ++V E G V + + +CSC FE+SGI+CRH+
Sbjct: 314 VETLAIPANIISDSGTHTTYRVAKFGEVHKGHTVSFDSLEVKANCSCQMFEYSGIICRHI 373
Query: 554 LRVLSTDNCFQIPDQYLPIRW 574
L V S N +P +YL RW
Sbjct: 374 LAVFSAKNVLALPSRYLLRRW 394
Score = 147 (56.8 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 230 KKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDS-YDMLFG 288
K+ + +NP F Y + D N + W+ + Y FGD LVFDTT+R Y + F
Sbjct: 26 KRRQLENPGFLYAIEDDCGN----VFWADPTCRLNYTYFGDTLVFDTTYRRGKRYQVPFA 81
Query: 289 IWVGLDNHGMACFFGCVLLRDENMQSFSW 317
+ G ++HG FGC L+ +E+ SF+W
Sbjct: 82 AFTGFNHHGQPVLFGCALILNESESSFAW 110
>TAIR|locus:2035144 [details] [associations]
symbol:FRS6 "FAR1-related sequence 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC008016 InterPro:IPR018289 Pfam:PF10551 EMBL:AY080775
EMBL:AY133776 IPI:IPI00532825 PIR:G96565 RefSeq:NP_175661.1
UniGene:At.37583 PRIDE:Q9SSQ4 EnsemblPlants:AT1G52520.1
GeneID:841683 KEGG:ath:AT1G52520 TAIR:At1g52520 eggNOG:NOG287780
HOGENOM:HOG000112651 InParanoid:Q9SSQ4 OMA:LELMCCK PhylomeDB:Q9SSQ4
ProtClustDB:CLSN2679731 Genevestigator:Q9SSQ4 Uniprot:Q9SSQ4
Length = 703
Score = 233 (87.1 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
Identities = 81/341 (23%), Positives = 147/341 (43%)
Query: 319 LKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYR-LYNXXXXXXXXXX 377
L+ A++ P + + HI+ K+ + L +YD + F + +Y
Sbjct: 367 LEAAISQVFPRSHQRFSLTHIMRKIPEKLGGL--HNYDAVRKAFTKAVYETLKVVEFEAA 424
Query: 378 WSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQS 437
W MV+ +G+ E + + SLY R WA +L+ FFAG+ + E + F +R + Q+
Sbjct: 425 WGFMVHNFGVIENEWLRSLYEERAKWAPVYLKDTFFAGIAAAHPGETLKPFFERYVHKQT 484
Query: 438 QLDRFVERVAEIVEFNDRAATKQKMQRK-LQKICLKTGSPIESHAATVLTPYAFGKLQ-- 494
L F+++ ++ R T ++ + L LKT E+ + + T F K Q
Sbjct: 485 PLKEFLDKYELALQKKHREETLSDIESQTLNTAELKTKCSFETQLSRIYTRDMFKKFQIE 544
Query: 495 -EELLMAPQYASLLVDEG--CFQVKHHTETDGGCK------VIWIPCQEHISCSCHQFEF 545
EE+ + VD F VK + + V++ + C C F F
Sbjct: 545 VEEMYSCFSTTQVHVDGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVRCICSCFNF 604
Query: 546 SGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTSA---STNPLRTTTRDRSEKIQLLESM 602
G LCRH L VL+ + +IP +Y+ RWR + N L T D ++++Q +
Sbjct: 605 YGYLCRHALCVLNFNGVEEIPLRYILPRWRKDYKRLHFADNGL-TGFVDGTDRVQWFDQ- 662
Query: 603 ASALVSESLETEERLDVACEQVAMVLNHVKDLPRPIHGMDD 643
L SL+ E V+ + + + +++ +H +++
Sbjct: 663 ---LYKNSLQVVEEGAVSLDHYKVAMQVLQESLDKVHSVEE 700
Score = 156 (60.0 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
Identities = 62/246 (25%), Positives = 107/246 (43%)
Query: 91 CHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHEL-L 149
C GF ++ +D + R RK +R GC A +R+ ++VD W V + HNH L
Sbjct: 133 CSSQGFKRI---ND--VNRVRKETRTGCPAMIRM-RQVDSK--RWRVVEVTLDHNHLLGC 184
Query: 150 KLNEVRLLPAYCSITPDDKTRICMFAKAG-MSVRQMLRLMELEKGVKLGCLPFTEIDVRN 208
KL Y S+ + R C+ + ++ R ++ G + +N
Sbjct: 185 KL--------YKSVK---RKRKCVSSPVSDAKTIKLYRACVVDNGSNVNPNSTLNKKFQN 233
Query: 209 LLQS--FRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYE 266
S N+ R A C+ M+ NPNF Y ++ +L ++ W+ A S
Sbjct: 234 STGSPDLLNLKRGDSAAIYNYFCR-MQLTNPNFFYLMDVNDEGQLRNVFWADAFSKVSCS 292
Query: 267 AFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAV- 325
FGD + D+++ +++ + G+++HG C L E M+S+ W LK ++V
Sbjct: 293 YFGDVIFIDSSYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVM 352
Query: 326 -EMPET 330
P+T
Sbjct: 353 KRSPQT 358
Score = 112 (44.5 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 48/168 (28%), Positives = 76/168 (45%)
Query: 10 ENGTDLSQDDT-GTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFS 68
+N S+++T G +E + +L + P +G F S D AY +Y +A + GF
Sbjct: 54 QNEERKSEEETMGGFDE--QSGLLVDERKEFDAPAVGMEFESYDDAYNYYNCYASEVGFR 111
Query: 69 IRRHRT----RGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRI 124
+R + R K+ G + C GF ++ +D + R RK +R GC A +R+
Sbjct: 112 VRVKNSWFKRRSKEKYGAVLC-----CSSQGFKRI---ND--VNRVRKETRTGCPAMIRM 161
Query: 125 VKRVDFDVPEWHVTGFSNVHNHEL-LKLNEVRLLPAYCSITP--DDKT 169
++VD W V + HNH L KL + C +P D KT
Sbjct: 162 -RQVDSK--RWRVVEVTLDHNHLLGCKLYKSVKRKRKCVSSPVSDAKT 206
>TAIR|locus:2082420 [details] [associations]
symbol:FRS7 "FAR1-related sequence 7" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC018907
InterPro:IPR018289 Pfam:PF10551 eggNOG:NOG292373
HOGENOM:HOG000112649 ProtClustDB:CLSN2686747 EMBL:AF360270
EMBL:AY150446 IPI:IPI00534625 RefSeq:NP_566278.1 UniGene:At.19021
UniGene:At.74222 PRIDE:Q9M8J3 EnsemblPlants:AT3G06250.1
GeneID:819799 KEGG:ath:AT3G06250 TAIR:At3g06250 InParanoid:Q9M8J3
OMA:RCGNEIE PhylomeDB:Q9M8J3 Genevestigator:Q9M8J3 Uniprot:Q9M8J3
Length = 764
Score = 273 (101.2 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 94/364 (25%), Positives = 161/364 (44%)
Query: 269 GDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMP 328
G ALV D + +++ LF W+ M+ ++ D+++ +++AVA P
Sbjct: 407 GGALVADESK--EAFSWLFQTWL----RAMSGRRPRSMVADQDLP-----IQQAVAQVFP 455
Query: 329 ETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYR-LYNXXXXXXXXXXWSKMVNKYGL 387
T H W I +K ++L +F +++K E+ + LY WS +VNKYGL
Sbjct: 456 GTHHRFSAWQIRSKERENLRSFP----NEFKYEYEKCLYQSQTTVEFDTMWSSLVNKYGL 511
Query: 388 REYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVA 447
R+ + +Y R W +LR FF G+ + F L++ + L F+ R
Sbjct: 512 RDNMWLREIYEKREKWVPAYLRASFFGGIHV---DGTFDPFYGTSLNSLTSLREFISRYE 568
Query: 448 EIVEFNDRAATKQKMQR-KLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASL 506
+ +E K+ LQ L+T P+E + T F Q EL + Y L
Sbjct: 569 QGLEQRREEERKEDFNSYNLQPF-LQTKEPVEEQCRRLYTLTIFRIFQSELAQSYNYLGL 627
Query: 507 LV-DEGC---FQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNC 562
+EG F V+ + V + + SCSC FE+ G+LCRH+L+V + +
Sbjct: 628 KTYEEGAISRFLVRKCGNENEKHAVTFSASNLNASCSCQMFEYEGLLCRHILKVFNLLDI 687
Query: 563 FQIPDQYLPIRW-RNVTSASTNPLRT--TTRD-RSEKIQLLESMASALVSESLETEERLD 618
++P +Y+ RW +N + + T++D ++ I L AS + + E+
Sbjct: 688 RELPSRYILHRWTKNAEFGFVRDVESGVTSQDLKALMIWSLREAASKYIEFGTSSLEKYK 747
Query: 619 VACE 622
+A E
Sbjct: 748 LAYE 751
Score = 141 (54.7 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 31/115 (26%), Positives = 60/115 (52%)
Query: 205 DVRNLLQSFRN--VNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSV 262
D+ N + S R + +++ + L+ + + ++ F Y ++D + I W+ + S
Sbjct: 308 DLSNHISSTRENTIGKEWYPV-LLDYFQSKQAEDMGFFYAIELDSNGSCMSIFWADSRSR 366
Query: 263 QLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSW 317
FGDA+VFDT++R Y + F ++G ++H G L+ DE+ ++FSW
Sbjct: 367 FACSQFGDAVVFDTSYRKGDYSVPFATFIGFNHHRQPVLLGGALVADESKEAFSW 421
Score = 96 (38.9 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 31 ILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRR---HRTRGKDGVGRGVTRR 87
I + L P++G F + + A ++Y S+A + GF +R +R+R DG V+ R
Sbjct: 17 IAENEGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSR-TDGT---VSSR 72
Query: 88 DFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKR 127
F C + GF Q N SR GC A++R+ +R
Sbjct: 73 RFVCSKEGF-----------QLN---SRTGCPAFIRVQRR 98
Score = 95 (38.5 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 33/89 (37%), Positives = 43/89 (48%)
Query: 42 PFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRT-RGKDGVGRGVTRRDFTCHRGGFPQMK 100
P+ G F S + A +FY ++A+ GF +R + R K V +T R F C + GF
Sbjct: 190 PYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSK--VDGSITSRRFVCSKEGFQH-- 245
Query: 101 PSDDGKMQRNRKSSRCGCQAYMRIVKRVD 129
PS R GC AYMRI KR D
Sbjct: 246 PS------------RMGCGAYMRI-KRQD 261
Score = 74 (31.1 bits), Expect = 7.3e-23, Sum P(2) = 7.3e-23
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 113 SSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELL-KLNEVRLLPAYCSITPDDKTRI 171
+SR GC A++R+ +R D +W + HNH+L + E + P P + R
Sbjct: 84 NSRTGCPAFIRVQRR---DTGKWVLDQIQKEHNHDLGGHIEEAQTTPR-----PSVQQRA 135
Query: 172 CMFAKAGMSV--RQMLRLM-ELEKG 193
K G+SV R ++++ E +KG
Sbjct: 136 PAPTKLGISVPHRPKMKVVDEADKG 160
Score = 70 (29.7 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 114 SRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHEL 148
SR GC AYMRI KR D W V + HNH+L
Sbjct: 247 SRMGCGAYMRI-KRQDSG--GWIVDRLNKDHNHDL 278
>TAIR|locus:2059304 [details] [associations]
symbol:FRS3 "FAR1-related sequence 3" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0008270 EMBL:AC005623 InterPro:IPR018289 Pfam:PF10551
EMBL:AY057491 EMBL:BT002690 IPI:IPI00526037 IPI:IPI00657216
PIR:H84668 RefSeq:NP_001031428.1 RefSeq:NP_565636.1
RefSeq:NP_850098.1 UniGene:At.22269 IntAct:Q9ZVC9 PaxDb:Q9ZVC9
PRIDE:Q9ZVC9 EnsemblPlants:AT2G27110.1 EnsemblPlants:AT2G27110.2
GeneID:817253 KEGG:ath:AT2G27110 TAIR:At2g27110 eggNOG:NOG302035
HOGENOM:HOG000241939 InParanoid:Q9ZVC9 OMA:LWPRQDE PhylomeDB:Q9ZVC9
ProtClustDB:CLSN2688464 Genevestigator:Q9ZVC9 Uniprot:Q9ZVC9
Length = 851
Score = 286 (105.7 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 91/322 (28%), Positives = 139/322 (43%)
Query: 269 GDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVE-- 326
G A++F LD D F IW+ F +RD+ S A+ +
Sbjct: 272 GQAILFGCALILDESDTSF-IWL------FKTFL--TAMRDQPPVSLVTDQDRAIQIAAG 322
Query: 327 --MPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNXXXXXXXX-XXWSKMVN 383
P +H + W +L + + L + +Y ++ E Y N WS +++
Sbjct: 323 QVFPGARHCINKWDVLREGQEKL-AHVCLAYPSFQVELYNCINFTETIEEFESSWSSVID 381
Query: 384 KYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFV 443
KY L ++ + SLY R W + R FFA + P Q + +F ++ Q+ L F
Sbjct: 382 KYDLGRHEWLNSLYNARAQWVPVYFRDSFFAAVF-PSQGYS-GSFFDGYVNQQTTLPMFF 439
Query: 444 ERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQY 503
+E + + LKT SP+E+ AA + T FGK QEEL+ +
Sbjct: 440 RLYERAMESWFEMEIEADLDTVNTPPVLKTPSPMENQAANLFTRKIFGKFQEELVETFAH 499
Query: 504 -ASLLVDEGC---FQVKHHTETDGGCKVIWIPCQE-HISCSCHQFEFSGILCRHVLRVLS 558
A+ + D+G F+V + E D ++ E +CSC FE SGILCRHVL V +
Sbjct: 500 TANRIEDDGTTSTFRVANF-ENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRHVLTVFT 558
Query: 559 TDNCFQIPDQYLPIRW-RNVTS 579
N +P Y+ RW RN S
Sbjct: 559 VTNILTLPPHYILRRWTRNAKS 580
Score = 200 (75.5 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 55/213 (25%), Positives = 100/213 (46%)
Query: 108 QRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDD 167
+R+++ C A +RI + +W VT F H H L N + L +
Sbjct: 98 KRSKRRLSESCDAMVRIELQGH---EKWVVTKFVKEHTHGLASSNMLHCLRPRRHFANSE 154
Query: 168 KTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIA 227
K+ + G++V + + ++ + G + + R + RD A +L+
Sbjct: 155 KSSY----QEGVNVPSGMMYVSMDANSR-GAR-----NASMATNTKRTIGRD--AHNLLE 202
Query: 228 MCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLF 287
K+M+ +NP F Y ++D N++ ++ W+ + S Y FGD + DT +R + + + F
Sbjct: 203 YFKRMQAENPGFFYAVQLDEDNQMSNVFWADSRSRVAYTHFGDTVTLDTRYRCNQFRVPF 262
Query: 288 GIWVGLDNHGMACFFGCVLLRDENMQSFSWSLK 320
+ G+++HG A FGC L+ DE+ SF W K
Sbjct: 263 APFTGVNHHGQAILFGCALILDESDTSFIWLFK 295
Score = 77 (32.2 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 1 MSEGNSMASENGTDLSQDDTGTIEENPEETILSQQTSVNLV-PFIGQRFVSQDAAYEFYC 59
+S GN + G D +G +N + L Q + + P +G F S+ A FY
Sbjct: 10 VSMGNHEIGDEGDVEPSDCSG---QNNMDNSLGVQDEIGIAEPCVGMEFNSEKEAKSFYD 66
Query: 60 SFAKQCGFSIRR-HRTRGKDGVGRGVTRRDFTC 91
+++Q GF+ + RT DG V+ R+F C
Sbjct: 67 EYSRQLGFTSKLLPRT---DG---SVSVREFVC 93
>TAIR|locus:2062606 [details] [associations]
symbol:FRS2 "FAR1-related sequence 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC005700
HOGENOM:HOG000090708 InterPro:IPR018289 Pfam:PF10551 EMBL:AK228730
EMBL:AK221503 IPI:IPI00520357 IPI:IPI00530517 PIR:G84730
RefSeq:NP_001077991.1 RefSeq:NP_001118431.1 RefSeq:NP_180784.2
RefSeq:NP_973580.1 UniGene:At.13189 UniGene:At.67147
EnsemblPlants:AT2G32250.1 EnsemblPlants:AT2G32250.3 GeneID:817785
KEGG:ath:AT2G32250 TAIR:At2g32250 eggNOG:NOG304016
InParanoid:Q3EBQ3 OMA:CKHAILV PhylomeDB:Q3EBQ3
ProtClustDB:CLSN2681190 Genevestigator:Q3EBQ3 Uniprot:Q3EBQ3
Length = 807
Score = 237 (88.5 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 74/316 (23%), Positives = 140/316 (44%)
Query: 265 YEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVA 324
Y G AL+ + + +Y LF W+ G A G V++ D++ L + V
Sbjct: 247 YVLLGCALIGEVSE--STYSWLFRTWLKAVG-GQAP--G-VMITDQDKL-----LSDIVV 295
Query: 325 VEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYR--LYNXXXXXXXXXXWSKMV 382
P+ +H +W +L+K+S+ L F+ S DD E + + + WS M+
Sbjct: 296 EVFPDVRHIFCLWSVLSKISEMLNPFV--SQDDGFMESFGNCVASSWTDEHFERRWSNMI 353
Query: 383 NKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRF 442
K+ L E + + L+ R W + AGL P +S +I + + +++++ F
Sbjct: 354 GKFELNENEWVQLLFRDRKKWVPHYFHGICLAGLSGPERSGSIASHFDKYMNSEATFKDF 413
Query: 443 VERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEEL--LMA 500
E + +++ K ++ + ++ L++ E + + T AF K Q E+ +++
Sbjct: 414 FELYMKFLQYRCDVEAKDDLEYQSKQPTLRSSLAFEKQLSLIYTDAAFKKFQAEVPGVVS 473
Query: 501 PQYASLLVD--EGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLS 558
Q D F+++ E + + CSCH FE+ G LC+H + VL
Sbjct: 474 CQLQKEREDGTTAIFRIEDFEERQNFFVALNNELLD-ACCSCHLFEYQGFLCKHAILVLQ 532
Query: 559 TDNCFQIPDQYLPIRW 574
+ + ++P QY+ RW
Sbjct: 533 SADVSRVPSQYILKRW 548
Score = 139 (54.0 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 231 KMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIW 290
+M+DK P F Y D R+ ++ W A + Y +F D ++FDT + + Y + F +
Sbjct: 179 EMQDKQPGFFYAVDFDSDKRVRNVFWLDAKAKHDYCSFSDVVLFDTFYVRNGYRIPFAPF 238
Query: 291 VGLDNHGMACFFGCVLLRDENMQSFSWSLK---EAVAVEMP 328
+G+ +H GC L+ + + ++SW + +AV + P
Sbjct: 239 IGVSHHRQYVLLGCALIGEVSESTYSWLFRTWLKAVGGQAP 279
Score = 105 (42.0 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 29/104 (27%), Positives = 48/104 (46%)
Query: 45 GQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDD 104
G F S++AAY FY +A+ GF I +R G+ + + C R G + K +
Sbjct: 41 GMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVK-IACSRFGTKREKATAI 99
Query: 105 GKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHEL 148
R + GC+A + + ++ D +W + F HNHE+
Sbjct: 100 NP----RSCPKTGCKAGLHMKRKED---EKWVIYNFVKEHNHEI 136
>TAIR|locus:2079651 [details] [associations]
symbol:AT3G07500 "AT3G07500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009639 "response to red or far red
light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002686
GenomeReviews:BA000014_GR HOGENOM:HOG000090425 EMBL:BT004031
EMBL:BT005083 IPI:IPI00525865 RefSeq:NP_187406.2 UniGene:At.48631
UniGene:At.71201 IntAct:Q84JA7 PRIDE:Q84JA7
EnsemblPlants:AT3G07500.1 GeneID:819938 KEGG:ath:AT3G07500
TAIR:At3g07500 eggNOG:NOG320386 InParanoid:Q84JA7 OMA:ERRRCTA
PhylomeDB:Q84JA7 ProtClustDB:CLSN2690766 Genevestigator:Q84JA7
Uniprot:Q84JA7
Length = 217
Score = 180 (68.4 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 64/215 (29%), Positives = 103/215 (47%)
Query: 12 GTDLSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRR 71
G L ++D +E + ++ + S + PFIG F S++AA FY ++A GF +R
Sbjct: 3 GNSLPEEDVEMMENSDVMKTVTDEASPMVEPFIGMEFESEEAAKSFYDNYATCMGFVMRV 62
Query: 72 HRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFD 131
R G V RR C++ GF + +P + ++ R +R GC+A + +VKR
Sbjct: 63 DAFRRSMRDGTVVWRR-LVCNKEGFRRSRPRRS-ESRKPRAITREGCKALI-VVKREKSG 119
Query: 132 VPEWHVTGFSNVHNHELLKLN-EVRL---LPAYCSITPDDKTRICMFAKAGMSVRQMLRL 187
W VT F HNH LL L+ VR LP TPD+K A +S R+ R
Sbjct: 120 T--WLVTKFEKEHNHPLLPLSPNVRRNFQLPQ----TPDEKDAKIRELSAELS-RERRRC 172
Query: 188 MELEKGVKLGCLPFTE------IDVRNLLQSFRNV 216
L++ + + E I++ +++QS R++
Sbjct: 173 TALQQQLDMVLKEMEEHSNHLTININSVIQSVRDI 207
>TAIR|locus:2135738 [details] [associations]
symbol:AT4G12850 "AT4G12850" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009639 "response to red or far red
light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002687
EMBL:AL049640 EMBL:AL161535 HOGENOM:HOG000090425 IPI:IPI00545761
PIR:T06643 RefSeq:NP_193021.1 UniGene:At.33440 DNASU:826897
EnsemblPlants:AT4G12850.1 GeneID:826897 KEGG:ath:AT4G12850
TAIR:At4g12850 InParanoid:Q9SU01 OMA:EEIECQD PhylomeDB:Q9SU01
ProtClustDB:CLSN2916026 ArrayExpress:Q9SU01 Genevestigator:Q9SU01
Uniprot:Q9SU01
Length = 183
Score = 140 (54.3 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 37/108 (34%), Positives = 61/108 (56%)
Query: 42 PFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGV-GRGVTRRDFTCHRGGFPQMK 100
P++G +F S++ A +FY ++K+ GF +R + R + G+ GR + RR C++ GF
Sbjct: 10 PYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRR-RSGIDGRTLARR-LGCNKQGFG--- 64
Query: 101 PSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHEL 148
P++ + + SSR GC+A + +VK +W VT F HNH L
Sbjct: 65 PNNQ-RSSSSSSSSREGCKATI-LVKMEKSG--KWVVTRFIKEHNHSL 108
Score = 38 (18.4 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 420 CQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQ 467
CQ + + R++S ++ + E ++ ++ D +K++ ++Q
Sbjct: 135 CQDRLCDVYRDRLVSFIDNVEHYTEELS--LKVRDIVENVKKLECQIQ 180
>TAIR|locus:2097543 [details] [associations]
symbol:AT3G59470 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009639 "response to red or
far red light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101
EMBL:CP002686 EMBL:AY058089 EMBL:AY143081 IPI:IPI00519802
RefSeq:NP_001190136.1 RefSeq:NP_567085.1 UniGene:At.26657
IntAct:Q93Z68 PaxDb:Q93Z68 PRIDE:Q93Z68 EnsemblPlants:AT3G59470.1
EnsemblPlants:AT3G59470.2 GeneID:825116 KEGG:ath:AT3G59470
TAIR:At3g59470 eggNOG:NOG330011 InParanoid:Q93Z68 OMA:VENHNEM
PhylomeDB:Q93Z68 ProtClustDB:CLSN2689239 Genevestigator:Q93Z68
Uniprot:Q93Z68
Length = 251
Score = 149 (57.5 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 39/110 (35%), Positives = 60/110 (54%)
Query: 42 PFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHR-TRGK-DGVGRGVTRRDFTCHRGGFPQM 99
P++GQ F S+ AA+ FY ++A + GF IR + +R + DG G R C++ G+
Sbjct: 70 PYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIG---RQLVCNKEGY--R 124
Query: 100 KPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELL 149
PS K+ R R +R GC+A + I K + +W +T F HNH L+
Sbjct: 125 LPSKRDKVIRQRAETRVGCKAMILIRKE---NSGKWVITKFVKEHNHSLM 171
>TAIR|locus:2041041 [details] [associations]
symbol:AT2G43280 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009639 "response to red or
far red light" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=RCA] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002685
EMBL:BT002891 EMBL:BT004409 IPI:IPI00532233 RefSeq:NP_181857.2
UniGene:At.36909 EnsemblPlants:AT2G43280.1 GeneID:818930
KEGG:ath:AT2G43280 TAIR:At2g43280 HOGENOM:HOG000090425
InParanoid:Q84J94 OMA:PREARHT PhylomeDB:Q84J94
ProtClustDB:CLSN2680222 Genevestigator:Q84J94 Uniprot:Q84J94
Length = 206
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/126 (29%), Positives = 62/126 (49%)
Query: 24 EENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRG 83
E++P + + P G F S+DAA FY ++++ GF +R R + GR
Sbjct: 4 EDDPTTKNSNNTDDFAIEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRI 63
Query: 84 VTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNV 143
+ RR F C++ G G +++ R S+R GC+A + + + D +W +T F
Sbjct: 64 LARR-FGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHV--KYDRS-GKWVITKFVKE 119
Query: 144 HNHELL 149
HNH L+
Sbjct: 120 HNHPLV 125
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.136 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 731 721 0.00085 121 3 11 22 0.49 33
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 627 (67 KB)
Total size of DFA: 420 KB (2202 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 63.92u 0.15s 64.07t Elapsed: 00:00:03
Total cpu time: 63.93u 0.15s 64.08t Elapsed: 00:00:03
Start: Thu May 9 22:11:53 2013 End: Thu May 9 22:11:56 2013