Query 004770
Match_columns 731
No_of_seqs 690 out of 4123
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 12:37:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 4.7E-94 1E-98 811.6 39.9 494 181-709 23-519 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 5.4E-92 1.2E-96 764.7 35.9 376 324-710 296-672 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 3.7E-87 8.1E-92 766.1 45.8 374 324-705 303-676 (774)
4 CHL00176 ftsH cell division pr 100.0 1.6E-79 3.4E-84 709.8 46.7 501 178-709 47-551 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2E-75 4.4E-80 680.4 51.5 489 182-707 31-520 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 5.8E-69 1.3E-73 610.6 41.6 379 321-708 44-422 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 2.3E-57 5E-62 479.2 26.8 254 323-579 142-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 6.4E-56 1.4E-60 536.0 27.8 320 355-706 1620-1996(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 8.8E-54 1.9E-58 479.0 29.9 325 243-579 323-678 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4.8E-52 1E-56 458.8 32.1 337 242-582 331-776 (802)
11 KOG0729 26S proteasome regulat 100.0 3.6E-45 7.9E-50 372.5 19.0 258 323-583 168-426 (435)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 2.7E-44 5.8E-49 397.5 22.3 227 326-558 184-414 (802)
13 KOG0727 26S proteasome regulat 100.0 6.9E-44 1.5E-48 361.0 23.2 251 324-577 147-398 (408)
14 KOG0736 Peroxisome assembly fa 100.0 1.5E-43 3.2E-48 399.7 24.7 251 324-579 664-936 (953)
15 KOG0728 26S proteasome regulat 100.0 1.7E-43 3.8E-48 357.7 21.6 252 324-578 139-391 (404)
16 KOG0652 26S proteasome regulat 100.0 1.6E-43 3.5E-48 359.6 19.9 252 323-577 162-414 (424)
17 COG1223 Predicted ATPase (AAA+ 100.0 3.8E-43 8.3E-48 357.1 20.9 241 324-574 113-354 (368)
18 KOG0726 26S proteasome regulat 100.0 1.3E-43 2.8E-48 364.8 16.8 252 324-578 177-429 (440)
19 KOG0738 AAA+-type ATPase [Post 100.0 1.5E-42 3.3E-47 368.6 21.8 246 325-578 205-472 (491)
20 PTZ00454 26S protease regulato 100.0 2.9E-41 6.2E-46 373.2 28.7 252 324-578 137-389 (398)
21 PRK03992 proteasome-activating 100.0 6E-40 1.3E-44 362.7 28.2 254 324-580 123-377 (389)
22 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-39 2.7E-44 386.3 29.3 251 324-579 445-714 (733)
23 COG0464 SpoVK ATPases of the A 100.0 9.4E-40 2E-44 371.3 25.7 250 322-575 232-483 (494)
24 PTZ00361 26 proteosome regulat 100.0 1.4E-39 3.1E-44 362.5 25.2 251 324-577 175-426 (438)
25 KOG0735 AAA+-type ATPase [Post 100.0 2.6E-39 5.7E-44 362.4 22.7 225 328-558 663-888 (952)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 4.2E-38 9.1E-43 355.2 26.0 244 326-577 222-465 (489)
27 TIGR01242 26Sp45 26S proteasom 100.0 2.6E-37 5.6E-42 338.8 27.4 249 324-575 114-363 (364)
28 KOG0739 AAA+-type ATPase [Post 100.0 5.6E-39 1.2E-43 331.6 13.0 229 322-558 123-353 (439)
29 KOG0737 AAA+-type ATPase [Post 100.0 2.6E-37 5.5E-42 328.9 20.6 229 322-558 82-314 (386)
30 KOG0651 26S proteasome regulat 100.0 4.6E-38 1E-42 326.9 14.0 250 324-576 124-374 (388)
31 TIGR03689 pup_AAA proteasome A 100.0 2.2E-35 4.7E-40 333.3 25.7 268 322-593 172-496 (512)
32 KOG0730 AAA+-type ATPase [Post 100.0 1E-32 2.2E-37 310.1 20.4 237 327-577 180-418 (693)
33 TIGR01243 CDC48 AAA family ATP 100.0 8.9E-32 1.9E-36 319.4 25.7 246 326-577 172-437 (733)
34 KOG0741 AAA+-type ATPase [Post 100.0 6.5E-33 1.4E-37 303.3 14.5 250 326-577 213-492 (744)
35 KOG0732 AAA+-type ATPase conta 100.0 2.2E-32 4.7E-37 322.0 18.8 249 326-579 259-529 (1080)
36 PLN00020 ribulose bisphosphate 100.0 9.2E-32 2E-36 289.2 20.6 219 327-556 110-352 (413)
37 KOG0740 AAA+-type ATPase [Post 100.0 1.3E-30 2.8E-35 286.0 16.0 246 323-576 144-405 (428)
38 PF01434 Peptidase_M41: Peptid 100.0 2.7E-29 5.9E-34 256.6 8.1 142 564-710 1-143 (213)
39 CHL00181 cbbX CbbX; Provisiona 99.9 5.3E-22 1.1E-26 211.6 20.8 213 331-557 22-256 (287)
40 TIGR02881 spore_V_K stage V sp 99.9 7.8E-22 1.7E-26 207.1 19.9 212 330-556 4-239 (261)
41 COG0466 Lon ATP-dependent Lon 99.9 1.6E-22 3.5E-27 230.0 15.2 315 331-699 322-659 (782)
42 TIGR02880 cbbX_cfxQ probable R 99.9 1.9E-21 4.2E-26 207.0 19.2 211 333-557 23-255 (284)
43 KOG0742 AAA+-type ATPase [Post 99.9 2.2E-21 4.9E-26 208.0 19.0 236 327-574 350-611 (630)
44 KOG0743 AAA+-type ATPase [Post 99.9 3.4E-21 7.3E-26 210.9 18.4 208 328-547 197-412 (457)
45 PF00004 AAA: ATPase family as 99.9 1.7E-21 3.7E-26 180.5 13.6 130 368-502 1-132 (132)
46 KOG2004 Mitochondrial ATP-depe 99.8 2.9E-21 6.3E-26 218.5 11.8 175 331-517 410-597 (906)
47 PRK00080 ruvB Holliday junctio 99.8 5.2E-19 1.1E-23 191.7 19.8 217 327-574 20-249 (328)
48 TIGR00635 ruvB Holliday juncti 99.8 6.7E-19 1.4E-23 188.0 20.1 211 330-574 2-228 (305)
49 PF05496 RuvB_N: Holliday junc 99.8 1.8E-19 3.8E-24 183.8 14.5 196 323-552 15-226 (233)
50 KOG0744 AAA+-type ATPase [Post 99.8 1E-19 2.2E-24 191.2 12.6 240 331-574 141-413 (423)
51 TIGR00763 lon ATP-dependent pr 99.8 2.2E-18 4.7E-23 206.3 21.5 164 332-516 320-505 (775)
52 KOG0736 Peroxisome assembly fa 99.8 6.5E-18 1.4E-22 192.8 18.9 222 346-576 412-654 (953)
53 KOG0735 AAA+-type ATPase [Post 99.8 8.9E-18 1.9E-22 190.2 19.5 233 332-577 408-650 (952)
54 COG2256 MGS1 ATPase related to 99.8 8.9E-18 1.9E-22 181.7 18.1 209 324-576 16-239 (436)
55 TIGR02902 spore_lonB ATP-depen 99.8 5.4E-18 1.2E-22 194.9 17.3 219 320-574 53-331 (531)
56 COG2255 RuvB Holliday junction 99.8 1.1E-17 2.5E-22 173.8 17.3 216 326-575 20-251 (332)
57 COG0464 SpoVK ATPases of the A 99.8 2.1E-17 4.5E-22 188.5 20.9 219 351-577 4-228 (494)
58 TIGR02639 ClpA ATP-dependent C 99.8 9.8E-18 2.1E-22 199.6 18.1 224 327-576 177-430 (731)
59 PRK10787 DNA-binding ATP-depen 99.7 1.1E-16 2.3E-21 191.0 18.3 164 332-517 322-507 (784)
60 PRK14956 DNA polymerase III su 99.7 2.5E-16 5.5E-21 176.9 20.1 212 324-572 10-243 (484)
61 PRK14962 DNA polymerase III su 99.7 3.1E-16 6.7E-21 177.7 20.4 206 325-573 7-240 (472)
62 PRK11034 clpA ATP-dependent Cl 99.7 2.3E-16 4.9E-21 187.1 19.7 222 329-577 183-435 (758)
63 PRK00149 dnaA chromosomal repl 99.7 5E-16 1.1E-20 175.4 19.3 225 326-576 116-350 (450)
64 PRK14961 DNA polymerase III su 99.7 1.2E-15 2.5E-20 168.0 20.5 213 324-573 8-242 (363)
65 PRK04195 replication factor C 99.7 1E-15 2.3E-20 174.3 20.6 207 325-570 7-220 (482)
66 PRK07003 DNA polymerase III su 99.7 6.1E-16 1.3E-20 179.9 18.5 210 324-570 8-239 (830)
67 TIGR02928 orc1/cdc6 family rep 99.7 3.3E-15 7.1E-20 163.3 23.5 224 328-575 11-274 (365)
68 TIGR00362 DnaA chromosomal rep 99.7 1.1E-15 2.4E-20 170.3 20.1 222 327-576 105-338 (405)
69 PRK14960 DNA polymerase III su 99.7 1.2E-15 2.5E-20 176.0 19.8 204 326-572 9-240 (702)
70 PRK13342 recombination factor 99.7 1.1E-15 2.4E-20 170.9 19.1 202 327-576 7-220 (413)
71 PRK06645 DNA polymerase III su 99.7 1.9E-15 4.1E-20 172.2 21.1 215 324-572 13-253 (507)
72 PRK12323 DNA polymerase III su 99.7 4.3E-16 9.4E-21 179.1 15.3 209 325-570 9-244 (700)
73 PRK06893 DNA replication initi 99.7 3.5E-15 7.6E-20 154.2 19.5 212 326-572 10-227 (229)
74 PRK00411 cdc6 cell division co 99.7 9.7E-15 2.1E-19 161.4 24.1 226 328-576 26-283 (394)
75 PRK14958 DNA polymerase III su 99.7 1.8E-15 3.9E-20 173.1 18.7 205 325-572 9-241 (509)
76 PRK14088 dnaA chromosomal repl 99.7 1.7E-15 3.7E-20 170.6 18.2 224 326-576 99-333 (440)
77 PRK07994 DNA polymerase III su 99.7 4.2E-15 9E-20 173.0 21.1 204 326-572 10-241 (647)
78 PRK14949 DNA polymerase III su 99.7 4.1E-15 8.9E-20 175.8 20.6 196 324-552 8-225 (944)
79 TIGR03345 VI_ClpV1 type VI sec 99.6 2.4E-15 5.3E-20 181.1 18.8 217 327-570 182-426 (852)
80 PRK14964 DNA polymerase III su 99.6 4.5E-15 9.7E-20 168.2 19.8 203 327-572 8-238 (491)
81 PRK08691 DNA polymerase III su 99.6 4.4E-15 9.6E-20 172.5 19.3 211 325-572 9-241 (709)
82 PRK14963 DNA polymerase III su 99.6 7.5E-15 1.6E-19 167.7 21.0 205 324-572 6-237 (504)
83 TIGR03420 DnaA_homol_Hda DnaA 99.6 3.7E-15 8E-20 151.9 16.4 206 327-572 10-225 (226)
84 PRK12402 replication factor C 99.6 1.5E-14 3.1E-19 156.1 21.4 209 326-573 9-247 (337)
85 PRK05563 DNA polymerase III su 99.6 1.2E-14 2.7E-19 168.0 21.3 205 325-572 9-241 (559)
86 PRK08903 DnaA regulatory inact 99.6 1.3E-14 2.8E-19 148.9 18.3 202 327-573 13-224 (227)
87 TIGR02397 dnaX_nterm DNA polym 99.6 1.2E-14 2.5E-19 158.3 18.9 207 324-573 6-240 (355)
88 PRK14951 DNA polymerase III su 99.6 1.1E-14 2.5E-19 168.9 19.7 210 326-572 10-246 (618)
89 PRK13341 recombination factor 99.6 9.6E-15 2.1E-19 172.7 18.4 212 323-574 19-246 (725)
90 PLN03025 replication factor C 99.6 1.2E-14 2.5E-19 157.3 17.6 202 325-571 6-219 (319)
91 KOG2028 ATPase related to the 99.6 1.3E-14 2.7E-19 154.9 16.9 215 323-576 129-369 (554)
92 PRK14969 DNA polymerase III su 99.6 1.9E-14 4E-19 165.5 19.4 210 326-572 10-241 (527)
93 PRK14086 dnaA chromosomal repl 99.6 2.3E-14 5E-19 165.1 20.0 225 326-577 282-517 (617)
94 PHA02544 44 clamp loader, smal 99.6 3.3E-14 7.1E-19 152.7 19.8 206 324-570 13-226 (316)
95 PRK08084 DNA replication initi 99.6 4.8E-14 1E-18 146.4 20.3 206 327-572 17-233 (235)
96 PRK10865 protein disaggregatio 99.6 1.6E-14 3.6E-19 174.4 18.8 166 327-518 173-356 (857)
97 PRK14957 DNA polymerase III su 99.6 4.1E-14 8.9E-19 162.4 21.0 205 325-572 9-241 (546)
98 PRK14959 DNA polymerase III su 99.6 2.2E-14 4.7E-19 165.9 18.5 206 324-572 8-241 (624)
99 PRK12422 chromosomal replicati 99.6 2.9E-14 6.3E-19 160.8 19.2 228 326-577 105-345 (445)
100 TIGR03346 chaperone_ClpB ATP-d 99.6 3E-14 6.5E-19 172.4 19.1 205 327-557 168-398 (852)
101 PRK14952 DNA polymerase III su 99.6 4.2E-14 9.1E-19 163.6 19.0 211 325-571 6-240 (584)
102 PRK14965 DNA polymerase III su 99.6 3.5E-14 7.5E-19 165.0 18.4 203 326-571 10-240 (576)
103 PRK14970 DNA polymerase III su 99.6 4.6E-14 1E-18 155.2 18.2 213 324-573 9-231 (367)
104 PRK07764 DNA polymerase III su 99.6 4.2E-14 9.1E-19 169.1 19.0 210 325-570 8-241 (824)
105 CHL00095 clpC Clp protease ATP 99.6 1.5E-14 3.2E-19 174.5 15.2 203 328-557 175-403 (821)
106 PRK07133 DNA polymerase III su 99.6 9E-14 1.9E-18 162.9 20.9 212 324-572 10-240 (725)
107 PRK07940 DNA polymerase III su 99.6 4.5E-14 9.8E-19 156.8 17.4 185 330-547 3-214 (394)
108 PRK05896 DNA polymerase III su 99.6 7.3E-14 1.6E-18 160.9 18.9 211 324-571 8-240 (605)
109 PRK08451 DNA polymerase III su 99.6 1.3E-13 2.8E-18 157.8 20.5 192 325-555 7-226 (535)
110 PTZ00112 origin recognition co 99.6 1.2E-13 2.6E-18 161.5 20.3 220 331-577 754-1008(1164)
111 PRK06647 DNA polymerase III su 99.6 1.3E-13 2.7E-18 159.5 20.2 210 326-572 10-241 (563)
112 PRK14953 DNA polymerase III su 99.6 1.6E-13 3.5E-18 156.3 20.7 211 325-572 9-241 (486)
113 PRK09111 DNA polymerase III su 99.6 1.5E-13 3.3E-18 159.6 20.8 213 324-573 16-255 (598)
114 PRK05342 clpX ATP-dependent pr 99.5 9.1E-14 2E-18 155.2 17.6 182 330-514 68-323 (412)
115 PRK14955 DNA polymerase III su 99.5 8.7E-14 1.9E-18 155.0 17.3 216 324-572 8-254 (397)
116 PRK08727 hypothetical protein; 99.5 2.5E-13 5.5E-18 140.8 19.1 208 327-574 14-230 (233)
117 PRK06305 DNA polymerase III su 99.5 2.6E-13 5.7E-18 153.4 20.3 206 324-572 9-243 (451)
118 PRK14087 dnaA chromosomal repl 99.5 1.8E-13 3.9E-18 154.7 18.5 192 365-575 141-348 (450)
119 PRK05642 DNA replication initi 99.5 3.2E-13 7E-18 140.1 19.0 180 365-572 45-232 (234)
120 PF00308 Bac_DnaA: Bacterial d 99.5 1.7E-13 3.7E-18 140.9 16.7 204 327-555 3-216 (219)
121 KOG0989 Replication factor C, 99.5 6.2E-14 1.3E-18 147.5 13.4 195 322-553 26-236 (346)
122 COG2812 DnaX DNA polymerase II 99.5 1.1E-13 2.3E-18 156.9 16.3 196 327-555 11-228 (515)
123 COG1224 TIP49 DNA helicase TIP 99.5 2.6E-13 5.5E-18 145.0 17.8 128 425-574 292-431 (450)
124 PRK00440 rfc replication facto 99.5 6.1E-13 1.3E-17 142.3 20.9 204 325-573 10-224 (319)
125 PRK14948 DNA polymerase III su 99.5 4.8E-13 1E-17 156.3 20.6 209 324-570 8-240 (620)
126 PRK14954 DNA polymerase III su 99.5 6.2E-13 1.3E-17 154.9 20.9 215 325-572 9-254 (620)
127 PF05673 DUF815: Protein of un 99.5 6E-13 1.3E-17 137.8 17.9 195 325-550 20-244 (249)
128 TIGR02640 gas_vesic_GvpN gas v 99.5 6.9E-13 1.5E-17 139.9 18.0 185 365-577 21-259 (262)
129 PRK14950 DNA polymerase III su 99.5 8.5E-13 1.8E-17 153.9 20.4 212 324-572 8-242 (585)
130 PRK06620 hypothetical protein; 99.5 9.6E-13 2.1E-17 135.0 17.6 199 326-572 10-213 (214)
131 TIGR02903 spore_lon_C ATP-depe 99.5 5.1E-12 1.1E-16 148.0 25.0 219 326-574 148-429 (615)
132 TIGR00390 hslU ATP-dependent p 99.5 6.1E-13 1.3E-17 147.1 16.2 175 333-512 13-342 (441)
133 PRK13407 bchI magnesium chelat 99.5 3.1E-13 6.7E-18 147.0 13.8 220 327-576 3-307 (334)
134 TIGR00382 clpX endopeptidase C 99.5 7.8E-13 1.7E-17 147.3 15.7 179 333-514 78-329 (413)
135 COG0593 DnaA ATPase involved i 99.4 3.8E-12 8.1E-17 140.9 19.6 229 325-580 80-318 (408)
136 PRK11034 clpA ATP-dependent Cl 99.4 1.8E-12 3.9E-17 154.2 17.9 166 333-518 459-668 (758)
137 PRK05201 hslU ATP-dependent pr 99.4 4.8E-13 1E-17 148.0 11.9 175 333-512 16-344 (443)
138 TIGR02639 ClpA ATP-dependent C 99.4 2.9E-12 6.3E-17 153.0 18.6 163 332-518 454-664 (731)
139 PRK14971 DNA polymerase III su 99.4 6.8E-12 1.5E-16 146.7 20.8 210 326-572 11-243 (614)
140 COG1474 CDC6 Cdc6-related prot 99.4 8.9E-12 1.9E-16 137.4 19.2 219 331-575 16-265 (366)
141 CHL00081 chlI Mg-protoporyphyr 99.4 6.3E-12 1.4E-16 137.4 17.3 222 327-577 12-324 (350)
142 PRK09087 hypothetical protein; 99.4 3.9E-12 8.6E-17 131.5 14.4 173 366-575 45-222 (226)
143 TIGR02030 BchI-ChlI magnesium 99.4 5.7E-12 1.2E-16 137.4 15.7 219 330-577 2-311 (337)
144 cd00009 AAA The AAA+ (ATPases 99.4 1.2E-11 2.5E-16 114.3 14.3 124 364-501 18-150 (151)
145 TIGR01650 PD_CobS cobaltochela 99.3 5.2E-12 1.1E-16 136.4 12.7 206 365-604 64-315 (327)
146 TIGR02442 Cob-chelat-sub cobal 99.3 1.5E-11 3.2E-16 144.7 16.3 215 330-577 2-306 (633)
147 TIGR00764 lon_rel lon-related 99.3 1.1E-10 2.5E-15 136.5 20.8 104 470-576 267-392 (608)
148 PF06068 TIP49: TIP49 C-termin 99.3 3.9E-11 8.5E-16 130.2 15.5 67 330-403 22-90 (398)
149 TIGR03345 VI_ClpV1 type VI sec 99.3 5.1E-11 1.1E-15 144.1 18.1 163 332-518 566-782 (852)
150 COG0714 MoxR-like ATPases [Gen 99.3 1.4E-10 3.1E-15 126.1 18.1 135 365-516 43-202 (329)
151 TIGR00368 Mg chelatase-related 99.3 1.2E-10 2.6E-15 133.1 18.2 212 328-573 188-497 (499)
152 PF05621 TniB: Bacterial TniB 99.3 1.3E-10 2.9E-15 123.8 17.1 221 330-570 32-284 (302)
153 PRK09112 DNA polymerase III su 99.3 1.5E-10 3.2E-15 127.2 17.9 191 326-551 17-244 (351)
154 smart00350 MCM minichromosome 99.3 8.4E-11 1.8E-15 135.2 16.7 223 333-575 204-504 (509)
155 COG2607 Predicted ATPase (AAA+ 99.3 2.2E-10 4.8E-15 117.5 17.6 195 325-550 53-276 (287)
156 KOG1942 DNA helicase, TBP-inte 99.2 2.4E-10 5.2E-15 119.7 17.0 130 425-576 297-439 (456)
157 TIGR03346 chaperone_ClpB ATP-d 99.2 2.1E-10 4.6E-15 139.2 19.3 202 332-554 565-824 (852)
158 COG0542 clpA ATP-binding subun 99.2 2E-10 4.3E-15 135.2 18.2 210 323-558 161-396 (786)
159 CHL00095 clpC Clp protease ATP 99.2 2.6E-10 5.7E-15 138.0 18.6 166 332-518 509-734 (821)
160 smart00382 AAA ATPases associa 99.2 3.5E-11 7.6E-16 109.7 8.6 126 365-503 2-147 (148)
161 PRK10865 protein disaggregatio 99.2 3.1E-10 6.8E-15 137.6 19.3 167 331-518 567-781 (857)
162 PRK13531 regulatory ATPase Rav 99.2 4.6E-10 1E-14 126.6 19.0 213 333-577 21-285 (498)
163 COG0542 clpA ATP-binding subun 99.2 6.7E-11 1.5E-15 139.1 12.4 161 332-518 491-707 (786)
164 PRK07471 DNA polymerase III su 99.2 3E-10 6.5E-15 125.4 16.5 187 326-549 13-240 (365)
165 PRK15424 propionate catabolism 99.2 6.7E-11 1.5E-15 136.1 10.9 208 329-567 216-477 (538)
166 TIGR03015 pepcterm_ATPase puta 99.2 5.8E-10 1.2E-14 116.8 16.9 192 365-574 43-265 (269)
167 TIGR02329 propionate_PrpR prop 99.2 1.1E-10 2.4E-15 134.4 12.0 214 328-570 208-465 (526)
168 PRK05564 DNA polymerase III su 99.2 4.3E-10 9.2E-15 121.5 15.9 169 330-538 2-182 (313)
169 PHA02244 ATPase-like protein 99.2 8.6E-10 1.9E-14 120.8 18.1 149 329-506 94-264 (383)
170 COG3829 RocR Transcriptional r 99.1 1E-10 2.3E-15 131.6 9.1 215 327-572 240-495 (560)
171 PF01078 Mg_chelatase: Magnesi 99.1 1E-10 2.2E-15 118.9 7.6 143 330-506 1-205 (206)
172 PRK09862 putative ATP-dependen 99.1 9.3E-10 2E-14 125.7 16.0 210 329-573 188-490 (506)
173 PRK11331 5-methylcytosine-spec 99.1 6.3E-10 1.4E-14 124.6 14.1 155 331-502 174-357 (459)
174 PRK07399 DNA polymerase III su 99.1 1.4E-09 3.1E-14 117.8 16.4 184 330-550 2-224 (314)
175 TIGR00678 holB DNA polymerase 99.1 1.1E-09 2.4E-14 109.3 14.3 145 362-538 11-183 (188)
176 TIGR01817 nifA Nif-specific re 99.1 2.1E-10 4.6E-15 132.5 10.3 209 326-569 190-439 (534)
177 TIGR00602 rad24 checkpoint pro 99.1 1.2E-09 2.7E-14 127.6 16.1 206 323-554 75-327 (637)
178 PF07728 AAA_5: AAA domain (dy 99.1 1.3E-10 2.8E-15 110.0 6.5 113 367-494 1-139 (139)
179 PRK04132 replication factor C 99.1 1.5E-09 3.2E-14 130.0 16.3 172 367-571 566-750 (846)
180 PRK05022 anaerobic nitric oxid 99.1 7.6E-10 1.6E-14 127.4 13.0 196 330-557 185-422 (509)
181 COG1221 PspF Transcriptional r 99.1 3.7E-10 8E-15 124.9 9.8 200 327-557 73-311 (403)
182 TIGR02031 BchD-ChlD magnesium 99.1 1.7E-09 3.7E-14 126.3 15.7 192 366-577 17-260 (589)
183 COG0470 HolB ATPase involved i 99.1 1.6E-09 3.5E-14 115.9 14.2 146 332-509 1-174 (325)
184 PRK10820 DNA-binding transcrip 99.1 7.7E-10 1.7E-14 127.6 12.2 210 327-568 199-447 (520)
185 PRK11608 pspF phage shock prot 99.1 1.3E-09 2.8E-14 118.7 13.3 195 330-555 4-240 (326)
186 PRK11388 DNA-binding transcrip 99.1 6.8E-10 1.5E-14 131.0 11.9 210 328-572 321-568 (638)
187 COG0606 Predicted ATPase with 99.1 2.1E-10 4.6E-15 127.6 7.0 212 328-573 175-483 (490)
188 TIGR02974 phageshock_pspF psp 99.0 7.7E-10 1.7E-14 120.6 11.0 190 334-555 1-233 (329)
189 PRK15429 formate hydrogenlyase 99.0 2E-09 4.3E-14 128.1 14.9 196 328-555 372-609 (686)
190 KOG2680 DNA helicase TIP49, TB 99.0 4.1E-09 9E-14 110.9 15.3 130 425-576 289-430 (454)
191 KOG1969 DNA replication checkp 99.0 6.2E-09 1.4E-13 119.9 17.7 206 324-558 263-518 (877)
192 PRK08058 DNA polymerase III su 99.0 3.8E-09 8.3E-14 115.2 14.5 154 330-514 3-180 (329)
193 COG1220 HslU ATP-dependent pro 99.0 2.3E-09 5.1E-14 114.4 12.1 84 425-513 251-346 (444)
194 COG1219 ClpX ATP-dependent pro 99.0 1.2E-09 2.6E-14 115.9 8.8 128 333-466 62-203 (408)
195 PF07724 AAA_2: AAA domain (Cd 98.9 1.4E-09 3.1E-14 107.9 7.6 111 366-482 4-131 (171)
196 PRK05707 DNA polymerase III su 98.9 8E-09 1.7E-13 112.7 14.1 158 362-548 19-204 (328)
197 PTZ00111 DNA replication licen 98.9 1E-08 2.2E-13 122.7 14.8 159 333-513 451-654 (915)
198 PRK08116 hypothetical protein; 98.9 1.5E-08 3.2E-13 107.7 14.3 124 364-505 113-251 (268)
199 smart00763 AAA_PrkA PrkA AAA d 98.9 1.6E-08 3.5E-13 110.7 14.6 83 331-420 49-144 (361)
200 COG2204 AtoC Response regulato 98.9 1.2E-08 2.6E-13 114.8 13.2 206 328-568 137-384 (464)
201 KOG0991 Replication factor C, 98.9 4.2E-09 9.2E-14 107.7 8.5 201 323-568 18-230 (333)
202 KOG0741 AAA+-type ATPase [Post 98.9 1.4E-08 3.1E-13 113.4 12.0 144 363-513 536-683 (744)
203 COG3604 FhlA Transcriptional r 98.8 6.6E-09 1.4E-13 116.0 9.0 200 327-555 218-456 (550)
204 TIGR02915 PEP_resp_reg putativ 98.8 1.4E-08 3E-13 114.4 10.0 207 330-568 137-382 (445)
205 PF00158 Sigma54_activat: Sigm 98.8 8.8E-09 1.9E-13 102.1 7.2 134 334-495 1-155 (168)
206 PRK13765 ATP-dependent proteas 98.8 7E-08 1.5E-12 113.3 14.8 102 471-574 277-399 (637)
207 PRK06964 DNA polymerase III su 98.8 4.7E-08 1E-12 107.1 12.4 134 362-515 18-203 (342)
208 PRK10923 glnG nitrogen regulat 98.8 3.4E-08 7.3E-13 112.1 11.6 208 330-572 136-385 (469)
209 PF13177 DNA_pol3_delta2: DNA 98.8 3.2E-08 6.9E-13 97.3 9.9 133 336-502 1-160 (162)
210 KOG1514 Origin recognition com 98.8 1.2E-07 2.6E-12 109.4 15.8 222 333-578 397-658 (767)
211 KOG2227 Pre-initiation complex 98.8 2.4E-07 5.3E-12 102.9 17.5 225 333-579 151-419 (529)
212 PRK12377 putative replication 98.7 8.3E-08 1.8E-12 100.9 12.5 101 365-481 101-206 (248)
213 PRK06871 DNA polymerase III su 98.7 2.4E-07 5.3E-12 100.9 16.3 134 362-515 21-178 (325)
214 PRK11361 acetoacetate metaboli 98.7 7.2E-08 1.6E-12 108.8 12.5 206 330-570 141-388 (457)
215 PRK07952 DNA replication prote 98.7 1.2E-07 2.5E-12 99.5 12.6 132 327-481 67-205 (244)
216 KOG0745 Putative ATP-dependent 98.7 4.5E-08 9.7E-13 107.5 9.7 97 366-465 227-331 (564)
217 PF01637 Arch_ATPase: Archaeal 98.7 9.8E-08 2.1E-12 96.3 11.2 184 335-545 2-232 (234)
218 PRK08939 primosomal protein Dn 98.7 1.6E-07 3.4E-12 101.6 13.1 102 364-481 155-261 (306)
219 PRK07993 DNA polymerase III su 98.6 3.7E-07 8.1E-12 99.9 14.8 159 362-547 21-204 (334)
220 COG1239 ChlI Mg-chelatase subu 98.6 2.9E-07 6.3E-12 101.7 13.2 160 328-517 13-233 (423)
221 PF07726 AAA_3: ATPase family 98.6 9.9E-09 2.1E-13 97.0 1.5 111 367-494 1-129 (131)
222 PRK08181 transposase; Validate 98.6 2.7E-07 5.9E-12 98.1 12.4 100 365-481 106-209 (269)
223 TIGR01818 ntrC nitrogen regula 98.6 1.7E-07 3.8E-12 106.0 11.1 210 331-572 133-381 (463)
224 PRK08769 DNA polymerase III su 98.6 5.8E-07 1.3E-11 97.7 14.2 153 362-541 23-203 (319)
225 KOG0990 Replication factor C, 98.6 8.8E-08 1.9E-12 102.1 7.6 191 323-552 32-234 (360)
226 PRK15115 response regulator Gl 98.6 6.3E-07 1.4E-11 101.0 14.4 181 365-570 157-379 (444)
227 PRK13406 bchD magnesium chelat 98.6 4.1E-07 9E-12 106.1 13.1 191 366-577 26-252 (584)
228 PRK06526 transposase; Provisio 98.6 1.7E-07 3.7E-12 98.8 9.1 101 364-481 97-201 (254)
229 KOG2035 Replication factor C, 98.5 9E-07 1.9E-11 92.9 12.8 178 328-538 9-220 (351)
230 PRK06835 DNA replication prote 98.5 6.5E-07 1.4E-11 97.8 12.2 69 366-436 184-258 (329)
231 PF13173 AAA_14: AAA domain 98.5 6.6E-07 1.4E-11 84.2 10.5 69 366-436 3-73 (128)
232 PRK06090 DNA polymerase III su 98.5 1.2E-06 2.5E-11 95.4 13.7 133 362-514 22-178 (319)
233 COG1484 DnaC DNA replication p 98.5 9.5E-07 2.1E-11 93.2 12.5 72 364-436 104-179 (254)
234 PRK10365 transcriptional regul 98.5 3E-07 6.5E-12 103.2 9.1 203 333-570 140-384 (441)
235 PF03215 Rad17: Rad17 cell cyc 98.5 2.6E-06 5.7E-11 98.2 16.8 208 324-556 11-269 (519)
236 PRK09183 transposase/IS protei 98.5 8.8E-07 1.9E-11 93.7 10.9 72 364-436 101-176 (259)
237 PF13401 AAA_22: AAA domain; P 98.4 7.9E-07 1.7E-11 82.6 9.1 98 365-478 4-125 (131)
238 PRK06921 hypothetical protein; 98.4 2E-06 4.4E-11 91.3 13.2 69 364-435 116-188 (266)
239 PF14532 Sigma54_activ_2: Sigm 98.4 2E-07 4.4E-12 88.8 5.0 81 335-439 1-84 (138)
240 PF01695 IstB_IS21: IstB-like 98.4 5E-07 1.1E-11 90.3 7.7 71 363-435 45-119 (178)
241 KOG0478 DNA replication licens 98.4 1.8E-06 3.8E-11 99.5 12.9 161 333-506 430-616 (804)
242 COG1241 MCM2 Predicted ATPase 98.4 8.7E-07 1.9E-11 104.0 10.4 222 332-576 286-593 (682)
243 KOG1051 Chaperone HSP104 and r 98.4 1.5E-06 3.2E-11 104.3 12.0 127 333-481 563-711 (898)
244 KOG0480 DNA replication licens 98.4 1.3E-06 2.8E-11 99.9 10.9 222 331-575 344-643 (764)
245 PF00493 MCM: MCM2/3/5 family 98.4 7.5E-08 1.6E-12 105.2 1.0 218 333-574 25-325 (331)
246 PRK08699 DNA polymerase III su 98.4 1.5E-06 3.3E-11 94.9 10.6 132 362-514 18-183 (325)
247 PF05729 NACHT: NACHT domain 98.3 7.9E-06 1.7E-10 78.2 12.5 142 367-518 2-165 (166)
248 cd01120 RecA-like_NTPases RecA 98.3 6.7E-06 1.4E-10 78.1 10.6 109 368-481 2-137 (165)
249 KOG1970 Checkpoint RAD17-RFC c 98.2 4.3E-05 9.2E-10 86.8 18.1 177 365-555 110-320 (634)
250 PF03969 AFG1_ATPase: AFG1-lik 98.2 9.6E-06 2.1E-10 89.8 11.4 103 362-481 59-168 (362)
251 PF12775 AAA_7: P-loop contain 98.1 5E-06 1.1E-10 88.7 7.3 139 365-518 33-195 (272)
252 PLN03210 Resistant to P. syrin 98.1 4E-05 8.6E-10 96.7 15.8 179 327-540 179-389 (1153)
253 TIGR02237 recomb_radB DNA repa 98.1 1.4E-05 3.1E-10 80.9 9.6 115 361-479 8-148 (209)
254 KOG0482 DNA replication licens 98.1 6.6E-06 1.4E-10 92.1 7.6 230 333-574 343-637 (721)
255 COG3284 AcoR Transcriptional a 98.0 6.4E-06 1.4E-10 94.9 6.8 184 367-572 338-554 (606)
256 COG3267 ExeA Type II secretory 98.0 0.00015 3.2E-09 76.0 16.0 186 367-569 53-267 (269)
257 PF00931 NB-ARC: NB-ARC domain 98.0 8.7E-05 1.9E-09 78.3 14.5 174 343-547 4-202 (287)
258 PRK05917 DNA polymerase III su 97.9 6.9E-05 1.5E-09 80.5 11.8 122 362-503 16-154 (290)
259 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00012 2.6E-09 76.4 12.7 136 365-521 32-182 (231)
260 COG3283 TyrR Transcriptional r 97.9 9.2E-05 2E-09 80.4 12.0 201 327-555 199-432 (511)
261 KOG1051 Chaperone HSP104 and r 97.9 9E-05 2E-09 89.4 12.9 201 331-557 185-412 (898)
262 cd01124 KaiC KaiC is a circadi 97.9 0.00011 2.5E-09 72.4 11.7 102 368-481 2-140 (187)
263 PRK07132 DNA polymerase III su 97.9 0.00019 4.2E-09 77.6 13.9 127 363-514 16-160 (299)
264 PRK05818 DNA polymerase III su 97.9 0.00034 7.4E-09 74.0 15.1 121 363-503 5-147 (261)
265 KOG0481 DNA replication licens 97.9 8.5E-05 1.8E-09 83.6 10.9 165 333-510 332-521 (729)
266 TIGR01618 phage_P_loop phage n 97.8 5.1E-05 1.1E-09 78.6 8.5 74 363-438 10-95 (220)
267 PRK07276 DNA polymerase III su 97.8 0.00039 8.4E-09 74.9 14.8 128 362-512 21-171 (290)
268 COG1485 Predicted ATPase [Gene 97.8 0.00012 2.6E-09 79.8 10.2 105 362-484 62-175 (367)
269 PF00910 RNA_helicase: RNA hel 97.7 8.2E-05 1.8E-09 68.1 7.5 23 368-390 1-23 (107)
270 COG1618 Predicted nucleotide k 97.7 0.00015 3.2E-09 71.3 9.4 27 363-389 3-29 (179)
271 PRK09361 radB DNA repair and r 97.7 0.00015 3.4E-09 74.4 10.2 39 361-399 19-60 (225)
272 PHA00729 NTP-binding motif con 97.7 7.3E-05 1.6E-09 77.6 7.6 25 366-390 18-42 (226)
273 PRK11823 DNA repair protein Ra 97.7 0.00019 4.1E-09 81.8 11.5 79 361-439 76-171 (446)
274 KOG0477 DNA replication licens 97.7 0.00013 2.9E-09 83.7 9.9 153 333-501 450-630 (854)
275 PRK00131 aroK shikimate kinase 97.7 0.00014 3E-09 70.7 8.7 43 363-407 2-44 (175)
276 TIGR02012 tigrfam_recA protein 97.7 0.0002 4.3E-09 78.2 10.3 119 361-479 51-190 (321)
277 cd01121 Sms Sms (bacterial rad 97.7 0.00026 5.6E-09 78.8 11.2 79 361-439 78-173 (372)
278 cd01394 radB RadB. The archaea 97.6 0.00034 7.4E-09 71.4 10.9 39 361-399 15-56 (218)
279 COG1373 Predicted ATPase (AAA+ 97.6 0.00069 1.5E-08 76.2 14.3 135 367-522 39-186 (398)
280 PRK15455 PrkA family serine pr 97.6 6.1E-05 1.3E-09 87.0 5.8 63 330-398 74-137 (644)
281 PRK08533 flagellar accessory p 97.6 0.00055 1.2E-08 71.2 12.3 77 361-437 20-130 (230)
282 TIGR02858 spore_III_AA stage I 97.6 0.00017 3.7E-09 76.9 8.5 113 366-501 112-256 (270)
283 PRK06067 flagellar accessory p 97.6 0.00039 8.5E-09 72.0 10.9 40 361-400 21-63 (234)
284 PF13207 AAA_17: AAA domain; P 97.6 5.1E-05 1.1E-09 69.8 3.8 30 368-397 2-31 (121)
285 PRK12723 flagellar biosynthesi 97.6 0.0005 1.1E-08 76.9 11.9 131 363-509 172-328 (388)
286 KOG1968 Replication factor C, 97.6 8.5E-05 1.8E-09 90.0 6.0 205 326-554 314-535 (871)
287 PRK08118 topology modulation p 97.6 0.00014 2.9E-09 72.1 6.4 32 367-398 3-34 (167)
288 cd03283 ABC_MutS-like MutS-lik 97.5 0.00044 9.5E-09 70.4 9.9 105 365-484 25-151 (199)
289 TIGR02688 conserved hypothetic 97.5 0.0013 2.8E-08 73.9 14.2 61 365-437 209-273 (449)
290 PF06480 FtsH_ext: FtsH Extrac 97.5 2.8E-05 6E-10 70.0 0.8 31 178-208 25-55 (110)
291 PRK00771 signal recognition pa 97.5 0.0012 2.6E-08 75.0 13.9 38 363-400 93-133 (437)
292 cd01128 rho_factor Transcripti 97.5 0.0011 2.4E-08 69.9 12.7 28 364-391 15-42 (249)
293 cd00983 recA RecA is a bacter 97.5 0.00042 9.1E-09 75.7 9.7 119 361-479 51-190 (325)
294 PRK13949 shikimate kinase; Pro 97.5 0.00083 1.8E-08 66.6 11.0 31 367-397 3-33 (169)
295 KOG2170 ATPase of the AAA+ sup 97.5 0.0011 2.4E-08 70.9 12.4 96 333-437 83-191 (344)
296 PF05707 Zot: Zonular occluden 97.5 0.00016 3.4E-09 73.1 5.8 124 368-504 3-147 (193)
297 PF13671 AAA_33: AAA domain; P 97.5 0.00036 7.9E-09 65.8 8.0 37 368-406 2-38 (143)
298 PF14516 AAA_35: AAA-like doma 97.5 0.0078 1.7E-07 66.1 19.2 173 364-548 30-240 (331)
299 PTZ00202 tuzin; Provisional 97.5 0.0097 2.1E-07 67.3 19.7 63 329-400 259-321 (550)
300 PF10236 DAP3: Mitochondrial r 97.4 0.0053 1.1E-07 66.8 17.5 121 424-546 156-308 (309)
301 PF07693 KAP_NTPase: KAP famil 97.4 0.003 6.5E-08 68.0 15.5 78 424-518 172-265 (325)
302 PRK07261 topology modulation p 97.4 0.00023 5E-09 70.6 6.2 33 367-399 2-34 (171)
303 PRK14722 flhF flagellar biosyn 97.4 0.00033 7.1E-09 77.9 7.9 112 362-489 134-267 (374)
304 PF06745 KaiC: KaiC; InterPro 97.4 0.00079 1.7E-08 69.2 10.2 109 360-479 14-159 (226)
305 PRK09376 rho transcription ter 97.4 0.00065 1.4E-08 75.7 9.8 74 367-440 171-272 (416)
306 PRK06762 hypothetical protein; 97.4 0.0006 1.3E-08 66.5 8.6 40 365-404 2-41 (166)
307 cd03216 ABC_Carb_Monos_I This 97.4 0.00037 7.9E-09 68.4 6.5 106 362-482 23-143 (163)
308 cd01393 recA_like RecA is a b 97.4 0.00067 1.5E-08 69.4 8.7 116 361-478 15-166 (226)
309 PF00437 T2SE: Type II/IV secr 97.4 0.00019 4.1E-09 75.8 4.8 99 326-434 98-207 (270)
310 COG1116 TauB ABC-type nitrate/ 97.3 0.00063 1.4E-08 71.2 8.3 26 363-388 27-52 (248)
311 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00078 1.7E-08 69.3 9.0 116 361-478 15-167 (235)
312 cd01131 PilT Pilus retraction 97.3 0.00086 1.9E-08 68.1 8.9 67 367-433 3-83 (198)
313 cd00046 DEXDc DEAD-like helica 97.3 0.0014 2.9E-08 59.6 9.4 24 366-389 1-24 (144)
314 COG5271 MDN1 AAA ATPase contai 97.3 0.00085 1.8E-08 83.5 10.0 137 365-517 1543-1704(4600)
315 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0021 4.6E-08 66.9 12.0 40 361-400 17-59 (237)
316 PRK04040 adenylate kinase; Pro 97.3 0.0039 8.4E-08 63.0 13.1 31 365-395 2-34 (188)
317 TIGR00416 sms DNA repair prote 97.3 0.0015 3.3E-08 74.7 11.1 78 361-438 90-184 (454)
318 PRK14974 cell division protein 97.3 0.0015 3.3E-08 71.8 10.7 73 364-436 139-234 (336)
319 KOG2543 Origin recognition com 97.2 0.0039 8.4E-08 68.7 13.3 161 332-516 6-193 (438)
320 PF13604 AAA_30: AAA domain; P 97.2 0.0015 3.3E-08 66.2 9.6 97 366-479 19-131 (196)
321 KOG2228 Origin recognition com 97.2 0.0021 4.5E-08 69.8 10.9 160 333-516 25-219 (408)
322 PF13191 AAA_16: AAA ATPase do 97.2 0.00022 4.8E-09 69.8 3.3 59 334-401 2-63 (185)
323 COG0703 AroK Shikimate kinase 97.2 0.00097 2.1E-08 66.5 7.7 40 366-407 3-42 (172)
324 PRK10536 hypothetical protein; 97.2 0.0011 2.4E-08 70.1 8.5 46 329-388 52-97 (262)
325 cd00464 SK Shikimate kinase (S 97.2 0.00059 1.3E-08 65.2 6.0 39 367-407 1-39 (154)
326 KOG2383 Predicted ATPase [Gene 97.2 0.0025 5.3E-08 70.6 11.2 162 362-552 111-297 (467)
327 PF06309 Torsin: Torsin; Inte 97.2 0.0011 2.4E-08 62.9 7.4 52 332-389 25-77 (127)
328 PRK13947 shikimate kinase; Pro 97.2 0.00036 7.8E-09 68.2 4.3 31 367-397 3-33 (171)
329 cd01130 VirB11-like_ATPase Typ 97.2 0.00052 1.1E-08 68.8 5.3 72 363-434 23-110 (186)
330 cd01122 GP4d_helicase GP4d_hel 97.2 0.0019 4.1E-08 68.1 9.8 38 361-398 26-67 (271)
331 TIGR01420 pilT_fam pilus retra 97.1 0.0011 2.4E-08 73.1 7.9 70 365-434 122-205 (343)
332 PRK10867 signal recognition pa 97.1 0.0064 1.4E-07 69.1 14.2 74 362-435 97-194 (433)
333 PRK09354 recA recombinase A; P 97.1 0.0019 4.1E-08 71.2 9.7 78 361-438 56-152 (349)
334 PRK04296 thymidine kinase; Pro 97.1 0.0022 4.8E-08 64.7 9.4 70 367-436 4-90 (190)
335 TIGR02782 TrbB_P P-type conjug 97.1 0.00046 9.9E-09 74.7 4.7 70 365-434 132-214 (299)
336 COG4178 ABC-type uncharacteriz 97.1 0.00097 2.1E-08 77.8 7.6 29 360-388 414-442 (604)
337 PRK05973 replicative DNA helic 97.1 0.0032 6.9E-08 66.1 10.7 39 361-399 60-101 (237)
338 PRK13948 shikimate kinase; Pro 97.1 0.0011 2.3E-08 66.8 7.0 43 363-407 8-50 (182)
339 PRK03839 putative kinase; Prov 97.1 0.00041 8.9E-09 68.8 3.9 31 367-397 2-32 (180)
340 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0032 7E-08 64.8 10.5 23 365-387 29-51 (213)
341 PRK00625 shikimate kinase; Pro 97.1 0.00049 1.1E-08 68.7 4.3 31 367-397 2-32 (173)
342 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0053 1.2E-07 63.0 12.1 109 361-479 12-152 (224)
343 PF03266 NTPase_1: NTPase; In 97.1 0.00076 1.6E-08 67.0 5.5 27 367-393 1-30 (168)
344 PRK13946 shikimate kinase; Pro 97.1 0.0014 3.1E-08 65.5 7.5 34 364-397 9-42 (184)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0032 7E-08 60.6 9.6 101 362-482 23-128 (144)
346 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0016 3.5E-08 63.0 7.4 108 362-484 22-143 (157)
347 cd00227 CPT Chloramphenicol (C 97.1 0.00061 1.3E-08 67.4 4.5 39 365-403 2-40 (175)
348 cd03228 ABCC_MRP_Like The MRP 97.0 0.002 4.4E-08 63.5 7.9 107 362-484 25-158 (171)
349 PF00448 SRP54: SRP54-type pro 97.0 0.0018 3.9E-08 65.9 7.7 108 365-485 1-131 (196)
350 cd03238 ABC_UvrA The excision 97.0 0.0049 1.1E-07 61.8 10.6 119 362-502 18-163 (176)
351 PRK04841 transcriptional regul 97.0 0.022 4.8E-07 69.8 18.5 158 365-547 32-225 (903)
352 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0071 1.5E-07 62.2 12.1 38 361-398 16-56 (229)
353 PRK11889 flhF flagellar biosyn 97.0 0.006 1.3E-07 68.3 12.2 72 364-435 240-331 (436)
354 cd00984 DnaB_C DnaB helicase C 97.0 0.0028 6.1E-08 65.5 9.2 39 361-399 9-51 (242)
355 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00061 1.3E-08 67.4 4.0 35 368-404 2-36 (183)
356 COG2274 SunT ABC-type bacterio 97.0 0.0017 3.8E-08 77.8 8.5 70 410-502 613-682 (709)
357 cd03247 ABCC_cytochrome_bd The 97.0 0.0039 8.4E-08 61.8 9.6 107 362-484 25-160 (178)
358 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0031 6.8E-08 66.0 9.4 36 368-403 2-40 (249)
359 PRK14532 adenylate kinase; Pro 97.0 0.00069 1.5E-08 67.6 4.2 37 367-405 2-38 (188)
360 KOG3347 Predicted nucleotide k 97.0 0.00062 1.3E-08 66.2 3.6 32 366-397 8-39 (176)
361 PHA02774 E1; Provisional 97.0 0.0039 8.4E-08 72.5 10.7 32 366-397 435-467 (613)
362 PRK14531 adenylate kinase; Pro 97.0 0.00084 1.8E-08 67.1 4.5 36 366-403 3-38 (183)
363 COG4619 ABC-type uncharacteriz 96.9 0.005 1.1E-07 61.3 9.7 27 362-388 26-52 (223)
364 PRK05800 cobU adenosylcobinami 96.9 0.0045 9.7E-08 61.6 9.6 95 367-465 3-114 (170)
365 PLN02200 adenylate kinase fami 96.9 0.001 2.2E-08 69.6 5.2 42 361-404 39-80 (234)
366 PRK08154 anaerobic benzoate ca 96.9 0.0028 6.2E-08 68.8 8.9 35 362-396 130-164 (309)
367 PLN02674 adenylate kinase 96.9 0.0034 7.4E-08 66.1 9.0 41 363-405 29-69 (244)
368 cd00544 CobU Adenosylcobinamid 96.9 0.0043 9.4E-08 61.8 9.3 93 368-464 2-113 (169)
369 smart00534 MUTSac ATPase domai 96.9 0.0047 1E-07 61.9 9.6 19 368-386 2-20 (185)
370 PF04665 Pox_A32: Poxvirus A32 96.9 0.012 2.5E-07 62.0 12.8 133 363-515 11-169 (241)
371 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0023 5.1E-08 68.0 7.8 93 329-434 57-159 (264)
372 PRK12339 2-phosphoglycerate ki 96.9 0.014 3E-07 59.5 13.2 30 365-394 3-32 (197)
373 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0041 8.9E-08 61.2 9.0 103 362-482 24-149 (166)
374 cd02020 CMPK Cytidine monophos 96.9 0.0008 1.7E-08 63.5 3.8 30 368-397 2-31 (147)
375 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0068 1.5E-07 64.2 11.2 39 361-399 32-73 (259)
376 PRK13900 type IV secretion sys 96.9 0.0011 2.5E-08 72.7 5.5 72 363-434 158-245 (332)
377 COG3854 SpoIIIAA ncharacterize 96.9 0.0024 5.3E-08 66.2 7.4 70 366-435 138-229 (308)
378 cd03246 ABCC_Protease_Secretio 96.9 0.0049 1.1E-07 60.9 9.5 105 363-482 26-157 (173)
379 COG0563 Adk Adenylate kinase a 96.9 0.0014 3.1E-08 65.8 5.6 35 367-403 2-36 (178)
380 PRK06696 uridine kinase; Valid 96.9 0.0014 3.1E-08 67.6 5.7 41 363-403 20-63 (223)
381 TIGR02655 circ_KaiC circadian 96.9 0.0067 1.5E-07 69.9 11.8 78 361-438 259-367 (484)
382 PRK12724 flagellar biosynthesi 96.9 0.0083 1.8E-07 67.7 12.0 37 364-400 222-262 (432)
383 PRK06217 hypothetical protein; 96.9 0.00095 2.1E-08 66.6 4.2 31 367-397 3-33 (183)
384 TIGR02788 VirB11 P-type DNA tr 96.9 0.0015 3.4E-08 70.8 6.0 74 359-434 138-228 (308)
385 PRK13764 ATPase; Provisional 96.9 0.0016 3.4E-08 76.5 6.4 69 365-434 257-334 (602)
386 PRK09519 recA DNA recombinatio 96.9 0.004 8.8E-08 75.0 9.9 118 361-478 56-194 (790)
387 PRK14530 adenylate kinase; Pro 96.8 0.0011 2.5E-08 67.8 4.6 36 367-404 5-40 (215)
388 PRK13894 conjugal transfer ATP 96.8 0.0014 3E-08 71.6 5.5 71 364-434 147-229 (319)
389 cd01428 ADK Adenylate kinase ( 96.8 0.00099 2.2E-08 66.2 4.0 35 368-404 2-36 (194)
390 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0048 1E-07 61.9 8.9 105 363-481 23-132 (177)
391 cd02021 GntK Gluconate kinase 96.8 0.001 2.2E-08 63.7 4.0 28 368-395 2-29 (150)
392 PTZ00088 adenylate kinase 1; P 96.8 0.0012 2.7E-08 68.7 4.8 39 363-403 4-42 (229)
393 PRK04328 hypothetical protein; 96.8 0.011 2.4E-07 62.3 11.9 39 361-399 19-60 (249)
394 PRK13833 conjugal transfer pro 96.8 0.0015 3.2E-08 71.5 5.5 69 365-433 144-224 (323)
395 PRK13851 type IV secretion sys 96.8 0.0014 3.1E-08 72.3 5.4 73 362-434 159-246 (344)
396 PRK13695 putative NTPase; Prov 96.8 0.01 2.2E-07 58.6 10.8 23 367-389 2-24 (174)
397 cd03243 ABC_MutS_homologs The 96.8 0.0057 1.2E-07 62.0 9.2 22 366-387 30-51 (202)
398 PRK10416 signal recognition pa 96.8 0.0099 2.1E-07 65.0 11.7 36 363-398 112-150 (318)
399 cd02027 APSK Adenosine 5'-phos 96.8 0.0042 9.1E-08 60.2 7.9 36 368-403 2-40 (149)
400 TIGR02236 recomb_radA DNA repa 96.8 0.006 1.3E-07 66.0 9.7 116 361-478 91-244 (310)
401 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.008 1.7E-07 60.9 9.9 21 366-386 29-49 (200)
402 TIGR03499 FlhF flagellar biosy 96.8 0.0044 9.5E-08 66.5 8.5 38 363-400 192-234 (282)
403 PRK04301 radA DNA repair and r 96.8 0.0062 1.3E-07 66.3 9.7 117 361-479 98-251 (317)
404 KOG0479 DNA replication licens 96.7 0.017 3.8E-07 66.5 13.2 44 535-578 602-645 (818)
405 KOG0058 Peptide exporter, ABC 96.7 0.0051 1.1E-07 72.5 9.3 28 361-388 490-517 (716)
406 PRK05057 aroK shikimate kinase 96.7 0.0016 3.4E-08 64.7 4.5 34 365-398 4-37 (172)
407 TIGR02238 recomb_DMC1 meiotic 96.7 0.0058 1.2E-07 66.7 9.2 116 361-478 92-243 (313)
408 PRK06547 hypothetical protein; 96.7 0.0017 3.7E-08 64.7 4.6 34 363-396 13-46 (172)
409 COG4088 Predicted nucleotide k 96.7 0.0025 5.3E-08 65.2 5.7 22 368-389 4-25 (261)
410 PRK00279 adk adenylate kinase; 96.7 0.0032 6.9E-08 64.5 6.7 30 367-396 2-31 (215)
411 PRK03731 aroL shikimate kinase 96.7 0.0016 3.6E-08 63.7 4.4 31 366-396 3-33 (171)
412 PRK05703 flhF flagellar biosyn 96.7 0.0081 1.7E-07 68.2 10.5 38 364-401 220-262 (424)
413 TIGR01313 therm_gnt_kin carboh 96.7 0.0013 2.8E-08 63.9 3.6 28 368-395 1-28 (163)
414 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0061 1.3E-07 60.2 8.3 106 362-482 23-156 (173)
415 TIGR02525 plasmid_TraJ plasmid 96.7 0.0035 7.7E-08 69.9 7.3 68 367-434 151-235 (372)
416 cd03215 ABC_Carb_Monos_II This 96.7 0.0063 1.4E-07 60.6 8.3 28 362-389 23-50 (182)
417 PHA02624 large T antigen; Prov 96.7 0.0054 1.2E-07 71.6 8.7 120 361-502 427-561 (647)
418 PRK11174 cysteine/glutathione 96.7 0.0063 1.4E-07 71.5 9.5 29 361-389 372-400 (588)
419 PHA02530 pseT polynucleotide k 96.7 0.0053 1.1E-07 65.7 8.1 39 365-404 2-40 (300)
420 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0037 8.1E-08 68.7 6.9 83 331-419 59-143 (358)
421 PLN03187 meiotic recombination 96.6 0.0054 1.2E-07 67.7 8.3 115 361-477 122-272 (344)
422 PF13521 AAA_28: AAA domain; P 96.6 0.0032 7E-08 61.4 5.9 35 368-403 2-36 (163)
423 PTZ00035 Rad51 protein; Provis 96.6 0.0081 1.7E-07 66.2 9.5 115 361-477 114-264 (337)
424 PF05272 VirE: Virulence-assoc 96.6 0.0059 1.3E-07 62.4 7.9 124 341-501 34-168 (198)
425 TIGR02655 circ_KaiC circadian 96.6 0.015 3.3E-07 67.0 12.2 40 361-400 17-60 (484)
426 COG1936 Predicted nucleotide k 96.6 0.0032 7E-08 62.7 5.7 34 367-403 2-35 (180)
427 cd03213 ABCG_EPDR ABCG transpo 96.6 0.01 2.2E-07 59.8 9.5 28 362-389 32-59 (194)
428 PRK14528 adenylate kinase; Pro 96.6 0.0019 4.2E-08 64.8 4.2 35 366-402 2-36 (186)
429 TIGR01360 aden_kin_iso1 adenyl 96.6 0.002 4.3E-08 63.7 4.1 34 367-402 5-38 (188)
430 PRK13808 adenylate kinase; Pro 96.6 0.009 2E-07 65.6 9.5 35 367-403 2-36 (333)
431 PRK14527 adenylate kinase; Pro 96.6 0.0019 4E-08 64.9 3.9 39 363-403 4-42 (191)
432 PRK13541 cytochrome c biogenes 96.6 0.021 4.6E-07 57.4 11.6 28 362-389 23-50 (195)
433 cd03232 ABC_PDR_domain2 The pl 96.6 0.012 2.7E-07 59.1 9.7 27 362-388 30-56 (192)
434 TIGR00767 rho transcription te 96.6 0.011 2.4E-07 66.3 10.1 27 364-390 167-193 (415)
435 TIGR01526 nadR_NMN_Atrans nico 96.6 0.0058 1.2E-07 67.0 7.8 71 365-436 162-243 (325)
436 cd03227 ABC_Class2 ABC-type Cl 96.6 0.0094 2E-07 58.4 8.5 22 365-386 21-42 (162)
437 PF01745 IPT: Isopentenyl tran 96.5 0.0036 7.9E-08 64.4 5.5 96 367-478 3-99 (233)
438 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0045 9.7E-08 62.7 6.2 43 363-405 13-56 (199)
439 PRK05541 adenylylsulfate kinas 96.5 0.008 1.7E-07 59.3 7.8 41 363-403 5-48 (176)
440 PF09848 DUF2075: Uncharacteri 96.5 0.0075 1.6E-07 66.6 8.4 23 367-389 3-25 (352)
441 cd03229 ABC_Class3 This class 96.5 0.006 1.3E-07 60.5 6.9 107 362-482 23-162 (178)
442 PRK02496 adk adenylate kinase; 96.5 0.0026 5.7E-08 63.2 4.3 30 367-396 3-32 (184)
443 TIGR01425 SRP54_euk signal rec 96.5 0.021 4.5E-07 64.8 12.0 72 363-434 98-192 (429)
444 cd03115 SRP The signal recogni 96.5 0.017 3.7E-07 56.8 9.9 33 367-399 2-37 (173)
445 PRK09302 circadian clock prote 96.5 0.024 5.1E-07 65.8 12.7 40 361-400 27-70 (509)
446 TIGR01351 adk adenylate kinase 96.5 0.0024 5.2E-08 65.1 4.0 34 368-403 2-35 (210)
447 COG5245 DYN1 Dynein, heavy cha 96.5 0.02 4.3E-07 71.6 12.0 179 361-556 1490-1717(3164)
448 PRK13539 cytochrome c biogenes 96.5 0.022 4.9E-07 57.8 10.9 28 362-389 25-52 (207)
449 cd03214 ABC_Iron-Siderophores_ 96.5 0.0092 2E-07 59.3 7.9 108 362-483 22-160 (180)
450 cd01125 repA Hexameric Replica 96.5 0.013 2.9E-07 60.9 9.5 21 368-388 4-24 (239)
451 PRK08099 bifunctional DNA-bind 96.5 0.0073 1.6E-07 68.0 8.0 40 364-403 218-257 (399)
452 COG1102 Cmk Cytidylate kinase 96.4 0.0025 5.3E-08 62.9 3.5 28 368-395 3-30 (179)
453 COG4650 RtcR Sigma54-dependent 96.4 0.0073 1.6E-07 64.5 7.3 75 361-439 204-297 (531)
454 TIGR02239 recomb_RAD51 DNA rep 96.4 0.0089 1.9E-07 65.3 8.3 116 361-478 92-243 (316)
455 COG2805 PilT Tfp pilus assembl 96.4 0.025 5.4E-07 61.0 11.2 93 365-479 124-231 (353)
456 COG2804 PulE Type II secretory 96.4 0.007 1.5E-07 69.1 7.4 95 327-435 233-338 (500)
457 smart00487 DEXDc DEAD-like hel 96.4 0.023 4.9E-07 54.9 10.1 24 366-389 25-49 (201)
458 TIGR02868 CydC thiol reductant 96.4 0.011 2.4E-07 68.5 9.2 29 361-389 357-385 (529)
459 PLN03186 DNA repair protein RA 96.4 0.0096 2.1E-07 65.7 8.3 116 361-478 119-270 (342)
460 TIGR00064 ftsY signal recognit 96.4 0.071 1.5E-06 57.1 14.6 38 362-399 69-109 (272)
461 PRK11176 lipid transporter ATP 96.4 0.013 2.8E-07 68.7 9.8 28 362-389 366-393 (582)
462 cd02022 DPCK Dephospho-coenzym 96.4 0.017 3.8E-07 57.5 9.3 35 368-405 2-36 (179)
463 PRK12608 transcription termina 96.4 0.021 4.5E-07 63.7 10.7 23 367-389 135-157 (380)
464 TIGR03797 NHPM_micro_ABC2 NHPM 96.4 0.01 2.2E-07 71.2 9.0 29 361-389 475-503 (686)
465 PRK14730 coaE dephospho-CoA ki 96.4 0.02 4.3E-07 58.1 9.8 37 367-405 3-39 (195)
466 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.013 2.9E-07 61.9 8.6 57 411-482 144-200 (254)
467 TIGR03375 type_I_sec_LssB type 96.3 0.01 2.3E-07 71.2 8.8 28 362-389 488-515 (694)
468 PF13481 AAA_25: AAA domain; P 96.3 0.0089 1.9E-07 59.4 6.9 74 366-439 33-156 (193)
469 TIGR03796 NHPM_micro_ABC1 NHPM 96.3 0.0087 1.9E-07 72.0 8.1 28 362-389 502-529 (710)
470 PF13238 AAA_18: AAA domain; P 96.3 0.0028 6.1E-08 58.1 3.1 22 368-389 1-22 (129)
471 PF00406 ADK: Adenylate kinase 96.3 0.0029 6.2E-08 61.0 3.0 35 370-406 1-35 (151)
472 PRK01184 hypothetical protein; 96.3 0.0042 9.2E-08 61.7 4.3 33 367-402 3-35 (184)
473 TIGR00152 dephospho-CoA kinase 96.3 0.024 5.2E-07 56.8 9.7 37 368-406 2-38 (188)
474 PRK04182 cytidylate kinase; Pr 96.3 0.004 8.7E-08 60.9 4.0 29 367-395 2-30 (180)
475 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.02 4.3E-07 63.7 9.8 69 366-434 135-222 (358)
476 PRK13657 cyclic beta-1,2-gluca 96.2 0.016 3.4E-07 68.2 9.5 29 361-389 357-385 (588)
477 TIGR01846 type_I_sec_HlyB type 96.2 0.013 2.9E-07 70.3 9.0 28 362-389 480-507 (694)
478 KOG3928 Mitochondrial ribosome 96.2 0.25 5.4E-06 55.4 17.9 120 425-548 316-457 (461)
479 cd03218 ABC_YhbG The ABC trans 96.2 0.012 2.6E-07 60.6 7.4 28 362-389 23-50 (232)
480 PRK06581 DNA polymerase III su 96.2 0.15 3.2E-06 53.9 15.3 149 363-535 13-176 (263)
481 cd03269 ABC_putative_ATPase Th 96.2 0.025 5.5E-07 57.3 9.7 28 362-389 23-50 (210)
482 PRK13538 cytochrome c biogenes 96.2 0.028 6E-07 57.0 9.9 28 362-389 24-51 (204)
483 cd03217 ABC_FeS_Assembly ABC-t 96.2 0.02 4.3E-07 58.0 8.8 27 362-388 23-49 (200)
484 PF13479 AAA_24: AAA domain 96.2 0.0076 1.7E-07 61.9 5.7 68 365-436 3-80 (213)
485 TIGR02857 CydD thiol reductant 96.2 0.018 3.9E-07 66.7 9.5 28 362-389 345-372 (529)
486 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0049 1.1E-07 59.9 4.0 29 368-396 3-31 (171)
487 PRK00889 adenylylsulfate kinas 96.1 0.02 4.4E-07 56.4 8.3 40 364-403 3-45 (175)
488 PRK09302 circadian clock prote 96.1 0.041 9E-07 63.8 12.1 107 361-478 269-406 (509)
489 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.031 6.7E-07 58.1 9.9 24 364-387 30-53 (222)
490 PRK10790 putative multidrug tr 96.1 0.018 3.9E-07 67.7 9.2 29 361-389 363-391 (592)
491 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.031 6.6E-07 57.3 9.8 23 365-387 29-51 (204)
492 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0085 1.8E-07 57.5 5.2 30 363-392 20-49 (133)
493 TIGR03819 heli_sec_ATPase heli 96.1 0.0071 1.5E-07 66.7 5.4 71 364-434 177-263 (340)
494 PRK12726 flagellar biosynthesi 96.1 0.022 4.8E-07 63.6 9.2 60 337-399 180-243 (407)
495 PF08423 Rad51: Rad51; InterP 96.1 0.015 3.2E-07 61.6 7.6 123 361-485 34-192 (256)
496 COG1126 GlnQ ABC-type polar am 96.1 0.027 5.7E-07 58.3 8.9 25 363-387 26-50 (240)
497 cd01878 HflX HflX subfamily. 96.1 0.065 1.4E-06 53.8 11.8 23 366-388 42-64 (204)
498 PF12780 AAA_8: P-loop contain 96.1 0.017 3.8E-07 61.7 7.9 169 333-518 9-212 (268)
499 COG2884 FtsE Predicted ATPase 96.1 0.051 1.1E-06 55.3 10.7 56 412-482 143-198 (223)
500 PRK08233 hypothetical protein; 96.1 0.0075 1.6E-07 59.2 4.8 33 366-398 4-37 (182)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-94 Score=811.59 Aligned_cols=494 Identities=51% Similarity=0.750 Sum_probs=425.9
Q ss_pred eeeehHHHHHHHHcCCccEEEEeCc--EEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchHH
Q 004770 181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (731)
Q Consensus 181 ~~~~ys~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (731)
..++|++|...+..++|++|.+++. .+..+.+++.. ..+|.+....|.. ...
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~~~~~~~~-~~~ 76 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSK-------------------------NTVYLPKGVNDPN-LVS 76 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcc-------------------------eEEeecCCcccHH-HHH
Confidence 3589999999999999999999874 45555555411 1223332233332 345
Q ss_pred HHHhCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhcccccccccCcccccccCCCCCCcccccCCCcccccccCCh
Q 004770 259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVD 338 (731)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~d 338 (731)
.+..+++.+....+...+++..++.+++|+.++.++++.+.....+..+......++++......+....++|+||+|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~d 156 (596)
T COG0465 77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVD 156 (596)
T ss_pred HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcH
Confidence 66667765543333334455555666666655554332221111222111112333343333344556889999999999
Q ss_pred HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHH
Q 004770 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFA 418 (731)
Q Consensus 339 evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~ 418 (731)
++|++|.|+|++|++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++|+++|+++|+|.+++++|++|.
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~ 236 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEE
Q 004770 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (731)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I 498 (731)
+|++++||||||||||++++.|+.+ .++++++++|++||||.+||||..+.+|+||++||+|+.|||||+|||||||+|
T Consensus 237 qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI 315 (596)
T COG0465 237 QAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315 (596)
T ss_pred HhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceee
Confidence 9999999999999999999999766 568899999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 004770 499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~g 578 (731)
.++.||..+|++|++.|++++ ++++++++..+|+.|+||+++||+|++|+|++.|.|+++..|++.||++|.+++++|
T Consensus 316 ~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 316 LVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred ecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 999999999999999999765 677999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCCccccccHHHHHHHHHHHh
Q 004770 579 IEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLL 658 (731)
Q Consensus 579 ~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i~~~L 658 (731)
+++++..+++++++.+||||+|||+++ .++++.++|+|+||+|| |.++||++..|.+|++++++++++++|+++|
T Consensus 394 ~erks~vise~ek~~~AYhEaghalv~----~~l~~~d~v~KvtIiPr-G~alG~t~~~Pe~d~~l~sk~~l~~~i~~~l 468 (596)
T COG0465 394 PERKSRVISEAEKKITAYHEAGHALVG----LLLPDADPVHKVTIIPR-GRALGYTLFLPEEDKYLMSKEELLDRIDVLL 468 (596)
T ss_pred cCcCCcccChhhhcchHHHHHHHHHHH----HhCCCCcccceeeeccC-chhhcchhcCCccccccccHHHHHHHHHHHh
Confidence 999999999999999999999999996 57899999999999999 5899999999999999999999999999999
Q ss_pred hhHHHHHHhcCC-CcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeecccC
Q 004770 659 GGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLS 709 (731)
Q Consensus 659 gGraAEel~f~~-~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~~~ 709 (731)
|||||||++| | ++||||+|||++||++|+.||++|||++.+|++.++..+
T Consensus 469 gGRaAEel~~-g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~ 519 (596)
T COG0465 469 GGRAAEELIF-GYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVE 519 (596)
T ss_pred CCcHhhhhhh-cccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcc
Confidence 9999999999 6 999999999999999999999999999999999998754
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-92 Score=764.68 Aligned_cols=376 Identities=51% Similarity=0.777 Sum_probs=360.7
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+...+++|+||-|+|++|++|+|+|+||++|++|.++|.+.|+||||+||||||||+||||+|+|+++|||+.++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
+|+|.+++++|++|..|++.+||||||||||+++.+|... ...+.++++||||.+||||..+.+||||+|||.|+.
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 9999999999999999999999999999999999998643 223889999999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~I 563 (731)
||+||.||||||++|.++.||..+|.+||+.|+.+ ++++.++|+..||+-|.||+|+||+||||.|++.|..++...|
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~V 529 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMV 529 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999976 5788999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCCccc
Q 004770 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (731)
Q Consensus 564 t~~d~~~Alervi~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~~~~ 643 (731)
+|.|++.|-+|+++|.++++..++++.++++||||+|||+|+ .+..++.|++|+||.|| |.++|.+.+.|+.|++
T Consensus 530 tM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA----~yTk~A~PlhKaTImPR-G~sLG~t~~LPe~D~~ 604 (752)
T KOG0734|consen 530 TMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVA----LYTKGAMPLHKATIMPR-GPSLGHTSQLPEKDRY 604 (752)
T ss_pred cHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEE----eecCCCccccceeeccC-CccccceeecCccchh
Confidence 999999999999999999999999999999999999999997 47888999999999999 7899999999999999
Q ss_pred cccHHHHHHHHHHHhhhHHHHHHhcC-CCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeecccCC
Q 004770 644 LLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSS 710 (731)
Q Consensus 644 ~~~~~~l~~~i~~~LgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~~~~ 710 (731)
.+||.+|++++.||||||+|||++|| +.+|+||++||++||++|++||+.||||+++|++++....+
T Consensus 605 ~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~ 672 (752)
T KOG0734|consen 605 SITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN 672 (752)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC
Confidence 99999999999999999999999997 68999999999999999999999999999999999876443
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-87 Score=766.08 Aligned_cols=374 Identities=59% Similarity=0.884 Sum_probs=358.9
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+....|+|+||+|++++|++|.|+|+||++|++|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 44556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
+++|.++.+++++|..|+.++||||||||||+++..|++....+.+++++++|||||.+||||....+|||+|+||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999996544567899999999999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~I 563 (731)
||+||+|||||||+|.+++|+..+|.+|++.|++...+. .+++++..+|.+|+||+|+||.|+||+|++.|.|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999887554 5778999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCCccc
Q 004770 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (731)
Q Consensus 564 t~~d~~~Alervi~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~~~~ 643 (731)
+..||+.|++|++.|++++...++.++++.+||||||||++++ ++++.+++.|++|+| |+++||+++.|.++ +
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~----~l~~~dpl~kvsIiP--GqalG~a~~~P~~~-~ 614 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGW----LLEHADPLLKVSIIP--GQALGYAQYLPTDD-Y 614 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhc----cccccCcceeEEecc--CCccceEEECCccc-c
Confidence 9999999999999999999999999999999999999999974 679999999999999 55999999999877 8
Q ss_pred cccHHHHHHHHHHHhhhHHHHHHhcCCCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceee
Q 004770 644 LLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSI 705 (731)
Q Consensus 644 ~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~ 705 (731)
++++++|++||+++||||||||++||+++||||++||++||++|+.||++|||++++|++++
T Consensus 615 l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~ 676 (774)
T KOG0731|consen 615 LLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISF 676 (774)
T ss_pred cccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceec
Confidence 99999999999999999999999997789999999999999999999999999999999999
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.6e-79 Score=709.75 Aligned_cols=501 Identities=43% Similarity=0.660 Sum_probs=413.1
Q ss_pred CcceeeehHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchH
Q 004770 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPY 257 (731)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 257 (731)
....+++||+|++++++|+|++|.+.++.+...+....... ......|.+..|......+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 106 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPEL--------------------GNRPQRIRVELPVGASELI 106 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccC--------------------CCcceeEEEeCCCCCHHHH
Confidence 44557999999999999999999998765443221110000 0001124454553223456
Q ss_pred HHHHhCCceeccCCCCCcchHHHHH-HHHHHHHHHHHHHhhccccc--ccccCcccccccCCCCCCcccccCCCcccccc
Q 004770 258 EKMLENQVEFGSPDKRSGGFLNSAL-IALFYVAVLAGLLHRFPVSF--SQTAGQVGHRKTRGPGGAKVSEQGDTITFADV 334 (731)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV 334 (731)
..|.+++|++...+.....++...+ ..++|++++.++++.+.... ....++ ....+.++...........++|+||
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~dv 185 (638)
T CHL00176 107 QKLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQ-NLMNFGKSKARFQMEADTGITFRDI 185 (638)
T ss_pred HHHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccchhHHHhhcccCCCCCHHhc
Confidence 7888999998765544444444444 33445555554432211111 111111 0112222222222344567999999
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHH
Q 004770 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVR 414 (731)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr 414 (731)
+|++++|++|.++++++++++.|..+|.+.|+++||+||||||||++|+++|+++++||+.+++++|.+.++|.+..+++
T Consensus 186 ~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr 265 (638)
T CHL00176 186 AGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVR 265 (638)
T ss_pred cChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCcc
Q 004770 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (731)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRF 494 (731)
++|+.|+..+||||||||||+++..++.+ ....+++..+++++||.+||++..+.+|+||++||+++.||++++|||||
T Consensus 266 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRF 344 (638)
T CHL00176 266 DLFKKAKENSPCIVFIDEIDAVGRQRGAG-IGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRF 344 (638)
T ss_pred HHHHHHhcCCCcEEEEecchhhhhcccCC-CCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccC
Confidence 99999999999999999999999877543 23457788999999999999999889999999999999999999999999
Q ss_pred ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 495 dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
|+++.+++|+.++|.+||+.|+++. ++.+++++..+|+.+.||+++||++++++|++.|.++++..|+++||++|+++
T Consensus 345 d~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 345 DRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999874 45678899999999999999999999999999999999999999999999999
Q ss_pred HhcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCCccccccHHHHHHHH
Q 004770 575 SIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRL 654 (731)
Q Consensus 575 vi~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i 654 (731)
++.|.+++. ..++++++++||||||||+|+ .++++.++|+||||+|| |.++||++..|+++++++++.+++++|
T Consensus 423 v~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~----~~l~~~~~v~kvtI~pr-g~~~G~~~~~p~~~~~~~t~~~l~~~i 496 (638)
T CHL00176 423 VIAGLEGTP-LEDSKNKRLIAYHEVGHAIVG----TLLPNHDPVQKVTLIPR-GQAKGLTWFTPEEDQSLVSRSQILARI 496 (638)
T ss_pred HHhhhccCc-cccHHHHHHHHHHhhhhHHHH----hhccCCCceEEEEEeec-CCCCCceEecCCcccccccHHHHHHHH
Confidence 999988764 457788999999999999997 46788899999999999 579999999999999999999999999
Q ss_pred HHHhhhHHHHHHhcC-CCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeecccC
Q 004770 655 VTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLS 709 (731)
Q Consensus 655 ~~~LgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~~~ 709 (731)
+++|||||||+++|| +++|+||++||++||+||+.||++||||+ +|++++....
T Consensus 497 ~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~ 551 (638)
T CHL00176 497 VGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNN 551 (638)
T ss_pred HHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCC
Confidence 999999999999996 37999999999999999999999999995 9999986533
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2e-75 Score=680.37 Aligned_cols=489 Identities=47% Similarity=0.730 Sum_probs=414.6
Q ss_pred eeehHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchHHHHH
Q 004770 182 SVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKML 261 (731)
Q Consensus 182 ~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 261 (731)
.++|+.|.+.+.++.+.++.+....|.+..+++. .|.+..|.+....+..+.
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~----------------------------~~~~~~~~~~~~l~~~l~ 82 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSN----------------------------RYTTYIPVNDPKLLDNLL 82 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCc----------------------------eEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999998888877655431 234444432234567788
Q ss_pred hCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhcccccccccCcccccccCCCCCCcccccCCCcccccccCChHhH
Q 004770 262 ENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAK 341 (731)
Q Consensus 262 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~devK 341 (731)
++++.+...+.....++..++..+.+++++++++..+...+... +......+.........+.....+|+|+.|.+.++
T Consensus 83 ~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-~~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~ 161 (644)
T PRK10733 83 TKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGG-GGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAK 161 (644)
T ss_pred HcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCceeEEeccccccccCchhhhCcHHHHcCHHHHH
Confidence 88988876554444454444444444444444332221111111 11011112222222233345578899999999999
Q ss_pred HHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHH
Q 004770 342 EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK 421 (731)
Q Consensus 342 ~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~ 421 (731)
++|.+++++++.+..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.+.+.+.++..++++|..|+
T Consensus 162 ~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~ 241 (644)
T PRK10733 162 EEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK 241 (644)
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEee
Q 004770 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVE 501 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~ 501 (731)
..+||||||||||+++..++... .+.+++.++++|+||.+||++..+.+++||+|||+|+.||++++||||||++|.|+
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~-~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCC-CCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcC
Confidence 99999999999999998876532 34567888999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcccch
Q 004770 502 TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEK 581 (731)
Q Consensus 502 ~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~g~~~ 581 (731)
+|+.++|.+||+.|+++ .++..++++..+++.|.|||++||.++|++|+..|.++++..|++.||++|++++..++++
T Consensus 321 ~Pd~~~R~~Il~~~~~~--~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 321 LPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhccccc
Confidence 99999999999999976 4667889999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCCccccccHHHHHHHHHHHhhhH
Q 004770 582 KTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGR 661 (731)
Q Consensus 582 ~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i~~~LgGr 661 (731)
+...+++++++.+||||+|||+|+ +++++.+++++++|+|| |.++||+++.|.++++..++.+|+++|+++||||
T Consensus 399 ~~~~~~~~~~~~~a~he~gha~~~----~~~~~~~~~~~v~i~pr-g~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGr 473 (644)
T PRK10733 399 RSMVMTEAQKESTAYHEAGHAIIG----RLVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGGR 473 (644)
T ss_pred ccccccHHHHHHHHHHHHHHHHHH----HHccCCCceeEEEEecc-CCCcceeEECCCcccccccHHHHHHHHHHHHhhH
Confidence 887888899999999999999996 46888899999999999 5799999999988888899999999999999999
Q ss_pred HHHHHhcC-CCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeecc
Q 004770 662 AAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIAT 707 (731)
Q Consensus 662 aAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~ 707 (731)
|||+++|| +++||||+|||++||+||+.||++||||+++|++.+..
T Consensus 474 aAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~ 520 (644)
T PRK10733 474 LAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAE 520 (644)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcc
Confidence 99999996 47999999999999999999999999999999999864
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=5.8e-69 Score=610.57 Aligned_cols=379 Identities=59% Similarity=0.894 Sum_probs=352.8
Q ss_pred cccccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 321 ~~~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
...++.+.++|+||+|++++|++++++++++++++.|...|.++|+|+||+||||||||++|+++|+++++||+.+++++
T Consensus 44 ~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
+.+.+.|.+.+.++++|+.|+..+||||||||||.++..++... ...+++..+++++||.+||++..+.+++||+|||+
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~-~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL-GGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCc-CCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999998876432 23467778999999999999988889999999999
Q ss_pred CCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCC
Q 004770 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (731)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~ 560 (731)
|+.||++++||||||+.|++++|+.++|.+||+.++.+. ++..++++..++..+.|||++||+++|++|+..|.++++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~ 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999764 445778999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCC
Q 004770 561 VVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANE 640 (731)
Q Consensus 561 ~~It~~d~~~Alervi~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~ 640 (731)
..|+.+||.+|++++..+.+++...+++++++.+|+||+|||+|+ ++++...++++++|.|| |.++||++..|.+
T Consensus 281 ~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~----~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~ 355 (495)
T TIGR01241 281 TEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVG----LLLKDADPVHKVTIIPR-GQALGYTQFLPEE 355 (495)
T ss_pred CCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHH----HhcCCCCceEEEEEeec-CCccceEEecCcc
Confidence 999999999999999999888777788899999999999999986 46777789999999999 5699999888877
Q ss_pred ccccccHHHHHHHHHHHhhhHHHHHHhcCCCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeeccc
Q 004770 641 DRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATL 708 (731)
Q Consensus 641 ~~~~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~~ 708 (731)
+....++++++++|+++|||||||+++| |++|+|+++||++||++|+.||.+|||++++|++++...
T Consensus 356 ~~~~~t~~~l~~~i~v~LaGraAE~~~~-G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~ 422 (495)
T TIGR01241 356 DKYLYTKSQLLAQIAVLLGGRAAEEIIF-GEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSD 422 (495)
T ss_pred ccccCCHHHHHHHHHHHhhHHHHHHHHh-cCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccC
Confidence 7789999999999999999999999999 699999999999999999999999999999999998753
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-57 Score=479.23 Aligned_cols=254 Identities=47% Similarity=0.759 Sum_probs=243.6
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.++.|.+||+||.|+++.+++|+|.|+. |++|+.|.++|+.+|+|||||||||||||+||||+|++.++.|+.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 4567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
+.+|+|+++..+|++|+.|+.++||||||||||+++.+|.... .+++.|..+++-+||++||||++..+|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~-t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG-TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC-CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 9999999999999999999999999999999999999986543 457888999999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCc
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~ 561 (731)
+.|||||+|||||||.|+||+||.++|.+||+.|.++ ..+.+++|++.||+.|+|+|||||.++|.+|.+.|.|+.+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--MNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh--ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999976 46789999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhccc
Q 004770 562 VVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 562 ~It~~d~~~Alervi~g~ 579 (731)
.|+++||.+|+++++...
T Consensus 379 ~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred eecHHHHHHHHHHHHhcc
Confidence 999999999999998653
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=6.4e-56 Score=536.02 Aligned_cols=320 Identities=20% Similarity=0.275 Sum_probs=275.0
Q ss_pred hHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh-----------------------------
Q 004770 355 DKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY----------------------------- 405 (731)
Q Consensus 355 ~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~----------------------------- 405 (731)
..+.++|+++|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 455788999999999999999999999999999999999999999998643
Q ss_pred ------------h--ccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC---C
Q 004770 406 ------------V--GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---S 468 (731)
Q Consensus 406 ------------v--G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---~ 468 (731)
+ +++..+++++|+.|++++||||||||||+++... ....++++|+++||+.. .
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCC
Confidence 1 2233458999999999999999999999997542 22346899999999874 4
Q ss_pred CCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc-CCHHHHHHhCCCCCHHHHHHH
Q 004770 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDIASMTTGFTGADLANL 547 (731)
Q Consensus 469 ~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl~~LA~~t~G~SgadL~~L 547 (731)
..+|+||||||+|+.|||||+||||||++|+|+.|+..+|++++..++..+++++.++ ++++.+|+.|+|||||||+++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 5689999999999999999999999999999999999999999987765556666654 689999999999999999999
Q ss_pred HHHHHHHHHhhCCccccHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeec--
Q 004770 548 VNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILP-- 625 (731)
Q Consensus 548 v~eAa~~A~r~~~~~It~~d~~~Alervi~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~p-- 625 (731)
|+||+..|.++++..|+++++..|++|++.|++.+.. +..++ .+|+||+|||||+ .++++..++++|+|++
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq----~~L~~~~pv~kISIy~~~ 1922 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQ----NVLLSNCPIDPISIYMKK 1922 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHH----HhccCCCCcceEEEecCC
Confidence 9999999999999999999999999999999876532 33333 3699999999997 4678899999999964
Q ss_pred ---cCcceeeeEEecCCCccccccHHHHHHHHHHHhhhHHHHHHhcCCCcccChhhHHHHHHHHHHHHHHHhCCCCC---
Q 004770 626 ---RTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRT--- 699 (731)
Q Consensus 626 ---r~g~alG~~~~~~~~~~~~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~--- 699 (731)
++|.+.||+|+.|.+ +++++.+++.+|.+||||||||+++|. ..+ .|+.||+.|||.+.
T Consensus 1923 ~~~r~~~~yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~-~~~------------~~~n~It~yg~vEnD~~ 1987 (2281)
T CHL00206 1923 KSCKEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSL-PGP------------DEKNGITSYGLVENDSD 1987 (2281)
T ss_pred ccccCcccceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccC-cch------------hhhcCcccccchhhhhH
Confidence 346678999988755 699999999999999999999999993 222 58999999999998
Q ss_pred --CCceeec
Q 004770 700 --IGPVSIA 706 (731)
Q Consensus 700 --~g~~~~~ 706 (731)
.|.+.++
T Consensus 1988 La~glLe~e 1996 (2281)
T CHL00206 1988 LVHGLLEVE 1996 (2281)
T ss_pred HhHhHHHhc
Confidence 5665543
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-54 Score=479.00 Aligned_cols=325 Identities=38% Similarity=0.647 Sum_probs=284.6
Q ss_pred eEEEecCCCCCcchHHH-HHhCCceeccCCC---------------------------CCcchHHHHHHHHHHHHHHHHH
Q 004770 243 IVYTTTRPSDIKTPYEK-MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLAGL 294 (731)
Q Consensus 243 ~~~~t~~~~~~~~~~~~-~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~ 294 (731)
++.+|++|..++..+++ ..++.|+++.|+. .++||++++|..+|..+.+..+
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~ 402 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQAT 402 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHh
Confidence 35677889888776664 6788888888874 2689999999999999988876
Q ss_pred HhhcccccccccCcccccccCCCCCCcccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcC
Q 004770 295 LHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGL 373 (731)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GP 373 (731)
.+.+ ..+....++ ...+.......+.|+++|+||.|++++|++|++.|.+ +++|+.|.++|..+|+|||||||
T Consensus 403 r~~~-~~~~~A~~~-----i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGP 476 (693)
T KOG0730|consen 403 RRTL-EIFQEALMG-----IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGP 476 (693)
T ss_pred hhhH-HHHHHHHhc-----CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECC
Confidence 6411 111111111 1222233444677999999999999999999999999 99999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHH
Q 004770 374 PGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (731)
Q Consensus 374 PGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (731)
||||||++|||+|++++++|+++++.++.++|+|++++.++++|++|+..+|||||+||||+++..|++. .+...+
T Consensus 477 PGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~----~~~v~~ 552 (693)
T KOG0730|consen 477 PGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS----SSGVTD 552 (693)
T ss_pred CCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC----ccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999753 226778
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHH
Q 004770 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (731)
Q Consensus 454 ~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA 533 (731)
+++++||++|||+....+|+||||||+|+.||+||+||||||+.|+|++||.+.|.+||+.++++ .++.+++|+++||
T Consensus 553 RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La 630 (693)
T KOG0730|consen 553 RVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELA 630 (693)
T ss_pred HHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999965 6889999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHhhC--CccccHHHHHHHHHHHhccc
Q 004770 534 SMTTGFTGADLANLVNEAALLAGRLN--KVVVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 534 ~~t~G~SgadL~~Lv~eAa~~A~r~~--~~~It~~d~~~Alervi~g~ 579 (731)
..|+||||+||.++|++|+..|.+++ ...|+.+||++|+..+...+
T Consensus 631 ~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 631 QATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 99999999999999999999999875 46789999999998765443
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-52 Score=458.83 Aligned_cols=337 Identities=36% Similarity=0.587 Sum_probs=282.7
Q ss_pred eeEEEecCCCCCcchHHH--HHhCCceeccCCC---------------------------CCcchHHHHHHHHHHHHHHH
Q 004770 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLA 292 (731)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~ 292 (731)
-++.+|++|+.+++.+++ .++++|.++.|++ .++||++++|.+|+..+...
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 346789999988877764 6778888888875 27899999999999999888
Q ss_pred HHHhhccccc---cc---ccCc----cc-cc---c---------------------cC----------------------
Q 004770 293 GLLHRFPVSF---SQ---TAGQ----VG-HR---K---------------------TR---------------------- 315 (731)
Q Consensus 293 ~~~~~~~~~~---~~---~~~~----~~-~~---~---------------------~~---------------------- 315 (731)
++-+.+-..- .. ..+. .. .. + ..
T Consensus 411 AikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al 490 (802)
T KOG0733|consen 411 AIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEAL 490 (802)
T ss_pred HHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHH
Confidence 7654331100 00 0000 00 00 0 00
Q ss_pred ----CCCCCcccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 316 ----GPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 316 ----~~~~~~~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
++.....-...|+|+|+||.|+++++.+|...|.+ .++|+.|.++|...|.|||||||||||||+||||+|+|++
T Consensus 491 ~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 491 SKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred HhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc
Confidence 00001111234899999999999999999987777 9999999999999999999999999999999999999999
Q ss_pred CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCC
Q 004770 391 VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (731)
Q Consensus 391 vpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 470 (731)
.+|++|.+.+++++|+|+++..||.+|.+|+..+|||||+||||+|++.|+.. ......+++||||+||||...+.
T Consensus 571 ~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~~R~ 646 (802)
T KOG0733|consen 571 ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLEERR 646 (802)
T ss_pred CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999764 35566899999999999999999
Q ss_pred cEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC--CCCHHHHHHHH
Q 004770 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT--GFTGADLANLV 548 (731)
Q Consensus 471 ~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~--G~SgadL~~Lv 548 (731)
+|.||||||+||.+|||++||||||+.++|++|+.++|.+||+.+.+....++.++||+++||+.+. ||||+||..||
T Consensus 647 gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 647 GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999877789999999999998776 99999999999
Q ss_pred HHHHHHHHhhC----------------CccccHHHHHHHHHHHhcccchh
Q 004770 549 NEAALLAGRLN----------------KVVVEKIDFIHAVERSIAGIEKK 582 (731)
Q Consensus 549 ~eAa~~A~r~~----------------~~~It~~d~~~Alervi~g~~~~ 582 (731)
++|.+.|.++. ...++..||++|+.++.....++
T Consensus 727 reAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~ 776 (802)
T KOG0733|consen 727 REASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSER 776 (802)
T ss_pred HHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHH
Confidence 99999998751 12467789999998877655443
No 11
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-45 Score=372.49 Aligned_cols=258 Identities=41% Similarity=0.676 Sum_probs=243.5
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.++.|.+|+.||.|+.+..+.|+|+|+. +.+|++|..+|+.+|+|||||||||||||++|+|+|+..+.-|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 4778999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
+.+|+|+++..+|++|+.|+....||||+||||++++.|-... .+++.+..+++-+|++++|||+++.+|-|+.|||+|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg-~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDG-AGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCC-CCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 9999999999999999999999999999999999998875442 356778889999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCc
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~ 561 (731)
+.|||||+||||+|+.++|.+||.+.|..||+.|.+. .....++-++.||+.++.-+|++|+.+|-+|.+.|.+..+.
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999865 56788899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccchhh
Q 004770 562 VVEKIDFIHAVERSIAGIEKKT 583 (731)
Q Consensus 562 ~It~~d~~~Alervi~g~~~~~ 583 (731)
..|..||.+|+++++.|..+-+
T Consensus 405 ~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998865543
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-44 Score=397.54 Aligned_cols=227 Identities=45% Similarity=0.764 Sum_probs=215.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
.++++|+|+.|++....+|.+++..+++|+.|..+|..||+||||+||||||||+||+|+|+++++||+.+++.++++.+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCC----CcEEEEEEcCCC
Q 004770 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATNRS 481 (731)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~----~~VIVIaATN~p 481 (731)
.|++++++|++|++|+..+|||+||||||+++++|+. ...+..++++.|||+.||++... .+|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999975 35566688999999999998654 679999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
|.|||+|+|+||||+.|.+..|+..+|++||+..+++ +.++.++|+..||+.|+||.|+||..||.+|+..|.++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~--lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRG--LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhh--CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999965 56778999999999999999999999999999999875
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-44 Score=360.96 Aligned_cols=251 Identities=44% Similarity=0.700 Sum_probs=237.1
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+.|.+++.|+.|++-.|++++|.|+. |.+.+.|.++|+.+|+|||||||||||||+||||+|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 456899999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
.+|.|+++..+|++|..|++++|+||||||||++..+|-+.. .+.+.+..+++-+||++||||+...+|-||.+||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaq-tgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQ-TGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccc-ccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 999999999999999999999999999999999998885543 4567788999999999999999999999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.|||||+||||+|+.|+|++||..+++-++.....+ ..+.+++|++.+..+-...|++||..+|++|.+.|.|+++-.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titsk--m~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK--MNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc--ccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhccee
Confidence 999999999999999999999999999999988876 457899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 004770 563 VEKIDFIHAVERSIA 577 (731)
Q Consensus 563 It~~d~~~Alervi~ 577 (731)
|...||++|...++.
T Consensus 384 vl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 384 VLQKDFEKAYKTVVK 398 (408)
T ss_pred eeHHHHHHHHHhhcC
Confidence 999999999977653
No 14
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=399.70 Aligned_cols=251 Identities=39% Similarity=0.651 Sum_probs=225.4
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
+.-|+|+|+||.|++++|.++.+-++. |++|+.|. .|.++-.|||||||||||||++|||+|.|+...|+++.+.+++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 456899999999999999999999998 88988754 5888888999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--CCCcEEEEEEcCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATNR 480 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~~~~VIVIaATN~ 480 (731)
+||+|++++++|++|++|+..+|||||+||+|.+++.|+... .+....++++.|||.|||++. +..+|+||+||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG--DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG--DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC--CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 999999999999999999999999999999999999997642 344567899999999999998 4678999999999
Q ss_pred CCCCCccccCCCccceEEEeeCCC-HHHHHHHHHHHHhcCCCCCcccCCHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhh
Q 004770 481 SDVLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDLGDIASMT-TGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd-~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t-~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
||.|||||+||||||+.+++.+++ .+.+..+|+...++ +.++++||+.+||+.+ +.|||||+-.+|..|.+.|.++
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876 56677899988876 4789999999999988 4799999999999999999876
Q ss_pred C-----------------CccccHHHHHHHHHHHhccc
Q 004770 559 N-----------------KVVVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 559 ~-----------------~~~It~~d~~~Alervi~g~ 579 (731)
. .-.|+++||.+|+++....+
T Consensus 899 ~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 899 TIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 1 24588999999998866543
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=357.73 Aligned_cols=252 Identities=41% Similarity=0.659 Sum_probs=239.1
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
+..|..+++-+.|++...++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+|+|....+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 445778899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
.+|.|++...+|++|-.|++++|+|||.||||.++..|..+. .+++.+..++.-+||+++|||+...++-||.|||+.+
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999999886653 4578888999999999999999999999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.|||||+||||+|+.|+||+|+.+.|.+||+.|.++- .+...+++..+|+...|.||+++..+|.+|.+.|.|+.+..
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvh 375 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVH 375 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcc
Confidence 9999999999999999999999999999999999874 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 004770 563 VEKIDFIHAVERSIAG 578 (731)
Q Consensus 563 It~~d~~~Alervi~g 578 (731)
+|++||+-|+.+++..
T Consensus 376 vtqedfemav~kvm~k 391 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQK 391 (404)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 9999999999998753
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=359.60 Aligned_cols=252 Identities=38% Similarity=0.645 Sum_probs=236.6
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
..+.|+-+++|+.|++...++|.|.+-. +.++++|..+|+++|+|+|+|||||||||++|+|.|...+..|..+.+.++
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 3556788999999999999999887666 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
+.+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|..+. ..++.+..+++-+||+++|||.++..|-|||+||+.
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 9999999999999999999999999999999999999886543 345678889999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCc
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~ 561 (731)
+.|||||+|+||+||.|+||.|+.+.|..|++.|.++- .+.+++++++||+.|.+|+|+++..+|-+|.+.|.|++..
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at 398 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT 398 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc
Confidence 99999999999999999999999999999999999764 5689999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhc
Q 004770 562 VVEKIDFIHAVERSIA 577 (731)
Q Consensus 562 ~It~~d~~~Alervi~ 577 (731)
.|+.+||.+++..+..
T Consensus 399 ev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 399 EVTHEDFMEGILEVQA 414 (424)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999877654
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.8e-43 Score=357.10 Aligned_cols=241 Identities=39% Similarity=0.625 Sum_probs=222.0
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+..++++|+||+|++++|+..+-++.+|++|++|.. =.|++||+|||||||||++|||+|+++++||+.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 455789999999999999999999999999998754 46899999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
.|+|.++.+++++|+.|++.+|||+||||+|+++-+|.-. ........++|.||++|||...+.+|+.|||||+|+.
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ---elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ---ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH---HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 9999999999999999999999999999999998776421 1223346789999999999999999999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHH-HHHHHHHHHHHhhCCcc
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA-NLVNEAALLAGRLNKVV 562 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~-~Lv~eAa~~A~r~~~~~ 562 (731)
||+|+++ ||...|+|.+|+.++|.+|++.+++. +|+.-+.+++.++..|.|+||+||. .+++.|...|..+++..
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~--~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKK--FPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHh--CCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999998 99999999999999999999999976 4666778899999999999999995 67888999999999999
Q ss_pred ccHHHHHHHHHH
Q 004770 563 VEKIDFIHAVER 574 (731)
Q Consensus 563 It~~d~~~Aler 574 (731)
|+.+|++.|+.+
T Consensus 343 v~~edie~al~k 354 (368)
T COG1223 343 VEREDIEKALKK 354 (368)
T ss_pred hhHHHHHHHHHh
Confidence 999999999987
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=364.78 Aligned_cols=252 Identities=41% Similarity=0.680 Sum_probs=239.1
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
+..|.-+|+|+.|++...++++|.|+. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 556788999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
.+|.|++++.+|++|+.|..++|+|+||||||+++.+|-+.. .++..+..+++-+||+++|||+++..|-||.|||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~-SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCC-CccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 999999999999999999999999999999999999886542 4567788899999999999999999999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.|||||+||||+|+.|+|+.||...+..||..|..+ ..+..+++++.+......+||+||..+|.+|.++|.|+.+..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMK 413 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999876 467899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 004770 563 VEKIDFIHAVERSIAG 578 (731)
Q Consensus 563 It~~d~~~Alervi~g 578 (731)
++++||..|.++++..
T Consensus 414 vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 414 VTMEDFKKAKEKVLYK 429 (440)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998754
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=368.57 Aligned_cols=246 Identities=38% Similarity=0.593 Sum_probs=222.1
Q ss_pred cCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..|+++|+||+|++++|+-|+|.|-. +.-|+ |.+-..+|.+|||++||||||||+||||+|.|++..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe-~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPE-FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHH-HHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 45789999999999999999999887 66665 45556788899999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCC-C---cEEEEEEcC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-S---AVIVLGATN 479 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-~---~VIVIaATN 479 (731)
+|.|++++.||-+|+.|+..+|++|||||||+|+.+|++. ..++..+++.++||.+|||.... . -|+|+||||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 9999999999999999999999999999999999999764 56777889999999999998653 2 389999999
Q ss_pred CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC
Q 004770 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (731)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~ 559 (731)
.|+.||+||+| ||.+.|+|++|+.++|.++|+..++. .+++++++++.|++.++||||+||.++|++|.+.+.|+.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999965 578899999999999999999999999999999998851
Q ss_pred -----------------CccccHHHHHHHHHHHhcc
Q 004770 560 -----------------KVVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 560 -----------------~~~It~~d~~~Alervi~g 578 (731)
+..|++.||++|+.++-..
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 1347888999999876544
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=373.24 Aligned_cols=252 Identities=42% Similarity=0.671 Sum_probs=233.8
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
++.|.++|+||+|++.+|++|++.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456889999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
..|+|.++..++++|..|+..+||||||||||+++..+.+.. .+.+.+..+.+.+++.+||++....+++||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999987764321 2234566788999999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.|||+++||||||+.|+|++|+.++|.+||+.++.+. .+..++++..++..|+||||+||.++|++|.+.|.++++..
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~--~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM--NLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 004770 563 VEKIDFIHAVERSIAG 578 (731)
Q Consensus 563 It~~d~~~Alervi~g 578 (731)
|+++||.+|+++++.+
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998764
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6e-40 Score=362.74 Aligned_cols=254 Identities=47% Similarity=0.760 Sum_probs=234.2
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+.|.++|+||+|+++++++|++.+.. +.+|+.|..+|..+|+++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 455789999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
..|.|.++..++.+|+.|+..+||||||||+|+++..+.... ...+.+..+++.+++.+++++....+++||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765432 2234566788999999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.||++++||||||+.|+|++|+.++|.+||+.++.+. ++..++++..+|..|.||+++||+++|++|+..|.+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~--~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM--NLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999654 56677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcccc
Q 004770 563 VEKIDFIHAVERSIAGIE 580 (731)
Q Consensus 563 It~~d~~~Alervi~g~~ 580 (731)
|+.+||.+|++++.....
T Consensus 360 i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred cCHHHHHHHHHHHhcccc
Confidence 999999999999876543
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.3e-39 Score=386.27 Aligned_cols=251 Identities=45% Similarity=0.795 Sum_probs=229.6
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+.+.++|+||+|++++|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 345789999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
++|+|+++..++++|..|+..+||||||||||+++..++.. ......++++++||.+||++....+++||+|||+|+
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 99999999999999999999999999999999999877543 223455789999999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC---
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~--- 559 (731)
.||++++||||||+.+++++|+.++|.+||+.++++ .++.++++++.+|+.|+||||+||.++|++|+..|.++.
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~ 679 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS 679 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999865 567788999999999999999999999999999998742
Q ss_pred ---------------CccccHHHHHHHHHHHhccc
Q 004770 560 ---------------KVVVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 560 ---------------~~~It~~d~~~Alervi~g~ 579 (731)
...|+++||.+|+.++....
T Consensus 680 ~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 680 PAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred ccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 12689999999998765443
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-40 Score=371.29 Aligned_cols=250 Identities=49% Similarity=0.772 Sum_probs=233.8
Q ss_pred ccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
+....+.++|+|+.|++++|+.+++.+.+ ++.++.|...+.++|+|+|||||||||||+||+|+|.+++.+|+.+.+++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 44567889999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
+.++|+|++++.++++|..|+..+||||||||+|++...++.. .+....++++++|.+|++.....+|+||+|||+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~----~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS----EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC----CchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999999999999999999888643 222336899999999999999999999999999
Q ss_pred CCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC-
Q 004770 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN- 559 (731)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~- 559 (731)
|+.||+|++||||||+.++|++||.++|.+|++.|+.+...++..+++++.+++.|.||+++||..+|++|++.+.++.
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998766556789999999999999999999999999999999988
Q ss_pred CccccHHHHHHHHHHH
Q 004770 560 KVVVEKIDFIHAVERS 575 (731)
Q Consensus 560 ~~~It~~d~~~Alerv 575 (731)
...|+++||.+|+.++
T Consensus 468 ~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 468 RREVTLDDFLDALKKI 483 (494)
T ss_pred cCCccHHHHHHHHHhc
Confidence 7889999999999873
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=362.50 Aligned_cols=251 Identities=42% Similarity=0.686 Sum_probs=232.8
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
+..|.++|+||.|+++++++|++++.. +.+|+.|..+|..+|+++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345789999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
..|.|.++..++++|..|....||||||||||+++.++.... .+.+.+..+++.++|.+||++....++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 999999999999999999999999999999999987765322 2344566788899999999998888999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.||++++||||||+.|+|++|+.++|.+||+.++.+. .+..+++++.++..+.|||++||.++|++|++.|.++++..
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~--~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM--TLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC--CCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999998764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 004770 563 VEKIDFIHAVERSIA 577 (731)
Q Consensus 563 It~~d~~~Alervi~ 577 (731)
|+.+||.+|+++++.
T Consensus 412 Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 412 VTQADFRKAKEKVLY 426 (438)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999999864
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-39 Score=362.37 Aligned_cols=225 Identities=42% Similarity=0.666 Sum_probs=213.1
Q ss_pred CcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 328 TITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
.++|+||.|+.++|+.|++++.+ -+.|+.|...+.+.+.|||||||||||||+||-|+|..+++.|+++.+.+++++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 49999999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCc
Q 004770 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (731)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDp 486 (731)
|.+++.+|++|.+|+..+|||+|+||+|.++++|+.. +.....+++||||++|||.+.-.+|.|+|||.+||.|||
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD----sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD----STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC----CCCchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 9999999999999999999999999999999999754 333457899999999999999999999999999999999
Q ss_pred cccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 487 ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
||+||||+|+.++.++|+..+|.+|++..... +.++.++|++.+|..|+|||||||..++-.|.+.|..+
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s--~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNS--LLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhc--cCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865 46788999999999999999999999999999888653
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.2e-38 Score=355.25 Aligned_cols=244 Identities=27% Similarity=0.444 Sum_probs=215.5
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
.+.++|+||.|++.+|++|++....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+...|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35789999999999999999866543 2345678999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 004770 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (731)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (731)
+|+++.+++++|+.|+..+||||||||||.++..++.. .......+++++++..|+. .+.+|+||+|||+++.||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999997654321 2345567899999999984 356799999999999999
Q ss_pred ccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccH
Q 004770 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (731)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~ 565 (731)
++++|+||||+.++|++|+.++|.+||+.|+.+.......+.+++.+|+.|.||||+||+++|++|+..|..++ ..++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCH
Confidence 99999999999999999999999999999998754333457899999999999999999999999999998766 56899
Q ss_pred HHHHHHHHHHhc
Q 004770 566 IDFIHAVERSIA 577 (731)
Q Consensus 566 ~d~~~Alervi~ 577 (731)
+||..|+.++..
T Consensus 454 ~dl~~a~~~~~P 465 (489)
T CHL00195 454 DDILLALKQFIP 465 (489)
T ss_pred HHHHHHHHhcCC
Confidence 999999987664
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.6e-37 Score=338.79 Aligned_cols=249 Identities=50% Similarity=0.774 Sum_probs=229.4
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+.|.++|+||+|+++++++|.+.+.. +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 456889999999999999999999876 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
..|.|.+...++.+|+.++...||||||||+|.++..+.... ...+.+..+.+.+++.+++++....++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765432 2335566788999999999988778999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.+|++++||||||+.|+|+.|+.++|.+|++.++... .+..++++..+++.+.||+++||.++|++|+..|.++++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~--~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM--KLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC--CCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999998654 45667899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 004770 563 VEKIDFIHAVERS 575 (731)
Q Consensus 563 It~~d~~~Alerv 575 (731)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999875
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-39 Score=331.58 Aligned_cols=229 Identities=37% Similarity=0.627 Sum_probs=206.0
Q ss_pred ccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
+..+.|+|+|+||+|++.+|+.|+|.|-. ++.|+.|. -+..+.+|+||||||||||++||||+|.|++-.||+++.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT-GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 44567999999999999999999998877 77777654 34567899999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 479 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN 479 (731)
++++|+|++++.++.+|+.|++++|+||||||||.++..|..+ .++..+++-.+||.+|.|... +.+|+|++|||
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en----EseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN----ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC----chHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 9999999999999999999999999999999999999988653 456678889999999999865 57899999999
Q ss_pred CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
-|+.||.|++| ||+++|+||+|+...|..+++.|+......+ .+.|+.+|+++|+||||+||.-+|+.|.+.-.|+
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~L-T~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVL-TEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCcccc-chhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999999 9999999999999999999999997754333 4558999999999999999999999998877654
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-37 Score=328.89 Aligned_cols=229 Identities=41% Similarity=0.636 Sum_probs=208.9
Q ss_pred ccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 004770 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (731)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s 399 (731)
+....-.|+|+|+.|++++|++|++.|-. ++.|+.|...+ .++|+||||+||||||||++|+|+|++++.+|+.++.+
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 34455679999999999999999999888 89999886443 47899999999999999999999999999999999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCc--EEEEEE
Q 004770 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGA 477 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~--VIVIaA 477 (731)
.+.++|.|++.+.++.+|..|.+-.||||||||+|.+.+.|+. ..++.....-++|...-||+.++.+ |+|+||
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s----~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS----TDHEATAMMKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc----chHHHHHHHHHHHHHHhccccCCCCceEEEEeC
Confidence 9999999999999999999999999999999999999988842 3566667778899999999987655 999999
Q ss_pred cCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 004770 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (731)
Q Consensus 478 TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r 557 (731)
||+|..||.|++| |+.++++|+.|+.++|.+||+..++.. ++++++|+.++|..|.||||.||.++|..|+....+
T Consensus 238 TNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ir 313 (386)
T KOG0737|consen 238 TNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIR 313 (386)
T ss_pred CCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHH
Confidence 9999999999999 999999999999999999999999875 567999999999999999999999999999988766
Q ss_pred h
Q 004770 558 L 558 (731)
Q Consensus 558 ~ 558 (731)
+
T Consensus 314 e 314 (386)
T KOG0737|consen 314 E 314 (386)
T ss_pred H
Confidence 3
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-38 Score=326.88 Aligned_cols=250 Identities=42% Similarity=0.670 Sum_probs=233.3
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
+....++|+++.|.-+...++++.++. +.+|..|.++|+++|++++||||||||||++|+++|..++++|+.++.+++.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 344678999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
+.|.|+++..+|+.|..|+...|||||+||||++++.+.. .....+.+..++|..|+++||+++....|-+|+|||+|+
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s-e~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS-EGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec-cccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 9999999999999999999999999999999999988743 345678889999999999999999999999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.|||+|+||||+|+.+++|+|+...|..|++.|... +.....++.+.+.+..+||.++|+++.|.||-+.|.+..+..
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~ 360 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDE 360 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeecccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHH
Confidence 999999999999999999999999999999999864 344567889999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHh
Q 004770 563 VEKIDFIHAVERSI 576 (731)
Q Consensus 563 It~~d~~~Alervi 576 (731)
+-++|+..++.++-
T Consensus 361 vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 361 VLHEDFMKLVRKQA 374 (388)
T ss_pred HhHHHHHHHHHHHH
Confidence 99999999987654
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.2e-35 Score=333.32 Aligned_cols=268 Identities=34% Similarity=0.557 Sum_probs=220.1
Q ss_pred ccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--------
Q 004770 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------- 392 (731)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp-------- 392 (731)
+.+..|.++|+||+|+++.++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 44667899999999999999999998887 889999999999999999999999999999999999998654
Q ss_pred --EEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC
Q 004770 393 --FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (731)
Q Consensus 393 --fi~is~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 466 (731)
|+.++++++..+|+|+++..++.+|+.|+.. .||||||||+|+++..++.+ ..++....++++||.+||++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999998864 69999999999999877532 23445567889999999999
Q ss_pred CCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc---------CCHHHHHH---
Q 004770 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD---------IDLGDIAS--- 534 (731)
Q Consensus 467 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d---------vdl~~LA~--- 534 (731)
....+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.++.. .+++..+ .++..++.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999865 2344211 12222211
Q ss_pred --------------------------hCCCCCHHHHHHHHHHHHHHHHhh----CCccccHHHHHHHHHHHhcccchhhh
Q 004770 535 --------------------------MTTGFTGADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAGIEKKTA 584 (731)
Q Consensus 535 --------------------------~t~G~SgadL~~Lv~eAa~~A~r~----~~~~It~~d~~~Alervi~g~~~~~~ 584 (731)
.++.+||++|+++|.+|...|..+ +...|+++|+..|+......-+.-..
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~ 487 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPN 487 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCC
Confidence 255688999999999998888765 34678899999999877655444333
Q ss_pred hcccchhhh
Q 004770 585 KLKGSEKAV 593 (731)
Q Consensus 585 ~l~~~ek~~ 593 (731)
...+++-.+
T Consensus 488 ~~~~~~w~~ 496 (512)
T TIGR03689 488 TTNPDDWAR 496 (512)
T ss_pred CCCHHHHhh
Confidence 334444333
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-32 Score=310.07 Aligned_cols=237 Identities=44% Similarity=0.665 Sum_probs=221.6
Q ss_pred CCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
+.++ +++.|.......+++++.. +.+|..|...|.++|+++|+|||||||||.+++++|++.++.++.+++++++..|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6777 8999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcC-CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 406 VGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 406 vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
.|++++.+|..|+.|.+.+ |+||||||||++++++... ++...++..+|++.||+.....+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999988642 224678999999999999988999999999999999
Q ss_pred CccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcccc
Q 004770 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (731)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It 564 (731)
|++++| ||||+.+.+..|+..+|.+|++.+.++.+ +.+++++..+|..|.||+|+||..+|++|++.+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~--~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN--LLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC--CcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 99999999999999999999999997754 457889999999999999999999999999999987 8
Q ss_pred HHHHHHHHHHHhc
Q 004770 565 KIDFIHAVERSIA 577 (731)
Q Consensus 565 ~~d~~~Alervi~ 577 (731)
+++|..|+..+..
T Consensus 406 ~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 406 LEIFQEALMGIRP 418 (693)
T ss_pred HHHHHHHHhcCCc
Confidence 8899999877544
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.9e-32 Score=319.37 Aligned_cols=246 Identities=50% Similarity=0.800 Sum_probs=221.9
Q ss_pred CCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
.+.++|+||+|+++++++|++++.. +++|+.|..+|..+|+++||+||||||||+||+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
|.|.....++.+|+.|....|+||||||||.+...++.. ......+++++|+..|+++..+..++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999998876532 2233467889999999999888899999999999999
Q ss_pred CccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC-----
Q 004770 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN----- 559 (731)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~----- 559 (731)
|++++|+|||++.+.++.|+.++|.+||+.+.+. .++..+++++.++..+.||+++|+..++++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988865 456778899999999999999999999999998887642
Q ss_pred --------------CccccHHHHHHHHHHHhc
Q 004770 560 --------------KVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 560 --------------~~~It~~d~~~Alervi~ 577 (731)
...++++||..|+..+..
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhccc
Confidence 124778899999876543
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-33 Score=303.26 Aligned_cols=250 Identities=34% Similarity=0.576 Sum_probs=212.4
Q ss_pred CCCccccc--ccCChHhHHHH-HH-HHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEEeechh
Q 004770 326 GDTITFAD--VAGVDEAKEEL-EE-IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASE 400 (731)
Q Consensus 326 ~~~vtf~D--V~G~devK~~L-~e-iV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-pfi~is~se 400 (731)
.|...|++ |.|++..-..+ ++ +....-.|+.-.++|.+.-+|+|||||||||||++||.|..-++. +--.+++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46777776 56777655544 22 333366788889999999999999999999999999999998863 455689999
Q ss_pred hHHHhhccchHHHHHHHHHHHhc--------CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 004770 401 FVELYVGMGASRVRDLFARAKKE--------APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (731)
.+++|+|++++.+|++|+.|.+. .=-||++||||+++++|+.. .++.....+++||||.-|||.+.-.+|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998642 12399999999999999754 334555678999999999999999999
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc--CCCCCcccCCHHHHHHhCCCCCHHHHHHHHHH
Q 004770 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (731)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~--~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~e 550 (731)
+||+-||+.|.||+||+|||||.-++++.+||.+.|.+||+.|.++ .+-.+.+++|+++||.+|..||||+|+-+|+.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865 23357899999999999999999999999999
Q ss_pred HHHHHHhh---------------CCccccHHHHHHHHHHHhc
Q 004770 551 AALLAGRL---------------NKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 551 Aa~~A~r~---------------~~~~It~~d~~~Alervi~ 577 (731)
|.-.|..+ .+-.|+++||..|++.+..
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 98887654 2346899999999997653
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-32 Score=322.03 Aligned_cols=249 Identities=41% Similarity=0.634 Sum_probs=222.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeech
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~s 399 (731)
...++|++|+|++.++.+|+|+|.+ |.+|+.|..+++.+|+|+|++||||||||+.|+|+|..+ .+-|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4579999999999999999999998 899999999999999999999999999999999999987 4778888999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
+..++|+|+.+..++.+|+.|+...|+|||+||||-|.+.|.. ..+.....++..||..|||++.+..|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 9999999999999999999999999999999999999888753 245566788999999999999999999999999
Q ss_pred CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC
Q 004770 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (731)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~ 559 (731)
+|+.+||||+||||||+.+++++|+.+.|.+|+..|-++..-++ ...-+..+|..|.||-|+||+.+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i-~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI-SRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC-CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999987754332 23357889999999999999999999999998763
Q ss_pred ----------------CccccHHHHHHHHHHHhccc
Q 004770 560 ----------------KVVVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 560 ----------------~~~It~~d~~~Alervi~g~ 579 (731)
...|+..||..|+.+.....
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 23366778888877765543
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=9.2e-32 Score=289.17 Aligned_cols=219 Identities=19% Similarity=0.214 Sum_probs=173.2
Q ss_pred CCcccccc-cCChHhHHHHHHHHHHhcChhHH-hhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 327 DTITFADV-AGVDEAKEELEEIVEFLRSPDKY-IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 327 ~~vtf~DV-~G~devK~~L~eiV~~Lk~p~~~-~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
..-+|+++ .|+--.+.-+..++-.+ .+.| ...+.++|++++||||||||||++|+++|++++++|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi--~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHI--AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHH--HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34567777 55655555555544321 1122 23678999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHh-----cCCeEEEEcccchhhcccCCcccccchHHHHHHH-HHHHHhhcCC------------
Q 004770 405 YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEMDGF------------ 466 (731)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L-n~LL~emdg~------------ 466 (731)
|+|++++.+|++|..|.. .+||||||||||++++.++.. ......+.+ .+|++.||+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~----~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT----QYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC----CcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 999999999999999975 469999999999999887532 222334554 6889888853
Q ss_pred CCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCC----CCHH
Q 004770 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG----FTGA 542 (731)
Q Consensus 467 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G----~Sga 542 (731)
+...+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++.++ + ..++..|+...+| |.|+
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~-~~dv~~Lv~~f~gq~~Df~GA 338 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S-REDVVKLVDTFPGQPLDFFGA 338 (413)
T ss_pred ccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C-HHHHHHHHHcCCCCCchhhhH
Confidence 34567999999999999999999999999865 589999999999999987654 2 4678888888877 5566
Q ss_pred HHHHHHHHHHHHHH
Q 004770 543 DLANLVNEAALLAG 556 (731)
Q Consensus 543 dL~~Lv~eAa~~A~ 556 (731)
--..+..++...-.
T Consensus 339 lrar~yd~~v~~~i 352 (413)
T PLN00020 339 LRARVYDDEVRKWI 352 (413)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=285.96 Aligned_cols=246 Identities=36% Similarity=0.547 Sum_probs=209.0
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
....+.|.|+|++|++.+|+.+.+++.+ +..|..|..+ ..+++++||.||||||||+|++|||.|++..|+.++++.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3455779999999999999999999998 4556665543 3567899999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC--CCcEEEEEEcC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATN 479 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--~~~VIVIaATN 479 (731)
.++|+|++++.++.+|+.|+...|+||||||+|.+..+|.+. .++...+...++|...++... +.+|+||+|||
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~----e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN----EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc----ccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 999999999999999999999999999999999999888542 445556778888888887644 46899999999
Q ss_pred CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC
Q 004770 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (731)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~ 559 (731)
+|+.+|.+++| ||.+.++|++|+.+.|..+|+.++.+... ...+.+++.|++.|+||++.||.++|.+|+..-.+..
T Consensus 299 ~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~-~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 299 RPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPN-GLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred CchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 99999999999 99999999999999999999999987633 3345689999999999999999999999986544432
Q ss_pred -------------CccccHHHHHHHHHHHh
Q 004770 560 -------------KVVVEKIDFIHAVERSI 576 (731)
Q Consensus 560 -------------~~~It~~d~~~Alervi 576 (731)
...|+..||..|+..+-
T Consensus 376 ~~~~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 376 GGTTDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred ccchhhhhcchhccCCCCcchHHHHHHhhc
Confidence 23355567777766544
No 38
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.95 E-value=2.7e-29 Score=256.59 Aligned_cols=142 Identities=44% Similarity=0.634 Sum_probs=120.4
Q ss_pred cHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCCccc
Q 004770 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 643 (731)
Q Consensus 564 t~~d~~~Alervi~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~~~~ 643 (731)
|++||.+|+++++.|.+++...+++++++++|+||||||+|+ ++++...+|.+++|+||+ .++||+...|.++.+
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva----~~l~~~~~v~~vsi~prg-~~~G~~~~~~~~~~~ 75 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVA----YLLPPADPVSKVSIVPRG-SALGFTQFTPDEDRY 75 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHH----HHSSS---EEEEESSTTC-CCCHCCEECHHTT-S
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHH----HHhcccccEEEEEEecCC-CcceeEEeccchhcc
Confidence 688999999999999998878889999999999999999996 467888899999999995 499999998888877
Q ss_pred cccHHHHHHHHHHHhhhHHHHHHhcC-CCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeecccCC
Q 004770 644 LLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSS 710 (731)
Q Consensus 644 ~~~~~~l~~~i~~~LgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~~~~ 710 (731)
..++++++++|+++|||||||+++|| +++|+|+++||++||.||+.||.+||||+++|++++....+
T Consensus 76 ~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~ 143 (213)
T PF01434_consen 76 IRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDD 143 (213)
T ss_dssp S-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-
T ss_pred cccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeecccc
Confidence 89999999999999999999999995 48999999999999999999999999999999999877554
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=5.3e-22 Score=211.59 Aligned_cols=213 Identities=20% Similarity=0.289 Sum_probs=165.4
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCC---CeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeechh
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASE 400 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~p---kgVLL~GPPGTGKT~LAkAlA~el-------gvpfi~is~se 400 (731)
+++++|++++|++|++++.++..++.+.+.|...| .++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34899999999999999998777777777787554 358999999999999999999875 23799999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
+...|+|..+..++.+|+.|. ++||||||+|.+...+. .++.....++.|+..|+... .+++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQR--DDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCc
Confidence 999999998888888888764 46999999999965432 12233567788888887433 55788888764
Q ss_pred CC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHH----h--CCCCC-HHHHHHHH
Q 004770 481 SD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS----M--TTGFT-GADLANLV 548 (731)
Q Consensus 481 pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~----~--t~G~S-gadL~~Lv 548 (731)
.. .++|+|.+ ||+.+|+|++++.+++.+|++.++.+.+..+.++. ...+.. . .+.|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 34699998 99999999999999999999999988766665553 222322 1 23344 89999999
Q ss_pred HHHHHHHHh
Q 004770 549 NEAALLAGR 557 (731)
Q Consensus 549 ~eAa~~A~r 557 (731)
+.|...-..
T Consensus 248 e~~~~~~~~ 256 (287)
T CHL00181 248 DRARMRQAN 256 (287)
T ss_pred HHHHHHHHH
Confidence 988765433
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=7.8e-22 Score=207.14 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=162.2
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCC---CCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeech
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkAlA~el-------gvpfi~is~s 399 (731)
.+++++|++++|++|++++.+..........|... +.++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36899999999999999999977665555666653 3568999999999999999999864 2478999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
++...|+|.....++++|+.|. ++||||||+|.|.... ..+.....++.|+..|+... ..+++|++++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMEDNR--NEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhccC--CCEEEEecCC
Confidence 9999999999999999998874 4699999999996421 12223456788999988543 4456666654
Q ss_pred CCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHh---------CCCCCHHHHH
Q 004770 480 RSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM---------TTGFTGADLA 545 (731)
Q Consensus 480 ~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~---------t~G~SgadL~ 545 (731)
..+ .++|+|.+ ||+..+.++.++.+++.+|++.++...+..+++++ ++.++.. ...-+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 322 47889998 99999999999999999999999987666565553 3344221 1123678888
Q ss_pred HHHHHHHHHHH
Q 004770 546 NLVNEAALLAG 556 (731)
Q Consensus 546 ~Lv~eAa~~A~ 556 (731)
|+++.|.....
T Consensus 229 n~~e~a~~~~~ 239 (261)
T TIGR02881 229 NIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHH
Confidence 98888776554
No 41
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=229.98 Aligned_cols=315 Identities=24% Similarity=0.357 Sum_probs=219.2
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-------
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE------- 403 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~------- 403 (731)
=.|++|++++|+++.|.+...+.... .....+||+||||+|||+|+++||+.+|.+|+.++.....+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 46899999999999998876443322 23357999999999999999999999999999999876654
Q ss_pred --HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCc----ccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 004770 404 --LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR----FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 404 --~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (731)
.|+|.++.++-+-+++|...+| +++|||||.++.+..+. +++..++|++..+...+-+++ ++- +.|++|||
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~-yDL-S~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP-YDL-SKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc-cch-hheEEEee
Confidence 7999999999999999999999 99999999998776543 456677777777777777765 443 78999999
Q ss_pred cCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 004770 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (731)
Q Consensus 478 TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r 557 (731)
+|..+.||.+|+. |+. +|.+.-+..+|..+|.+.|+-.+. +.-..|....--++...|..+++...+.|..
T Consensus 473 ANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~------~~~~gL~~~el~i~d~ai~~iI~~YTREAGV 543 (782)
T COG0466 473 ANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQ------LKEHGLKKGELTITDEAIKDIIRYYTREAGV 543 (782)
T ss_pred cCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHH------HHHcCCCccceeecHHHHHHHHHHHhHhhhh
Confidence 9999999999997 765 889999999999999999983321 1111122222346778889999998888877
Q ss_pred hCCccccHHHHHHHHHHHhcccchhhhhc--ccchhhhhhhhhccceeeeh-hHhhhCCCCC--ceeeeEeeccCcceee
Q 004770 558 LNKVVVEKIDFIHAVERSIAGIEKKTAKL--KGSEKAVVARHEAGHAVVGT-AVASLLPGQP--RVEKLSILPRTGGALG 632 (731)
Q Consensus 558 ~~~~~It~~d~~~Alervi~g~~~~~~~l--~~~ek~~iA~hEaGHAlv~~-~l~~ll~~~~--~v~kvti~pr~g~alG 632 (731)
|+ ++|.+..++++...- ....+.. ..+.. .+.. +.+.+ +..+..-....|.+.|
T Consensus 544 R~------------LeR~i~ki~RK~~~~i~~~~~k~~--------~~i~~~~l~~-yLG~~~f~~~~~~~~~~vGvVtG 602 (782)
T COG0466 544 RN------------LEREIAKICRKAAKKILLKKEKSI--------VKIDEKNLKK-YLGVPVFRYGKAEEEDQVGVVTG 602 (782)
T ss_pred hH------------HHHHHHHHHHHHHHHHHhcCcccc--------eeeCHHHHHH-HhCCcccCccccccCCCCeeEee
Confidence 65 556555555554321 1111111 11211 1111 11222 2233334445689999
Q ss_pred eEEecCCCccccccHHHHHHHHHHHhhhHHHHHHhcCCCcccChhhH-HHHHHHHHHHHH----HHhCCCCC
Q 004770 633 FTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDD-IRRATDMAYKAI----AEYGLNRT 699 (731)
Q Consensus 633 ~~~~~~~~~~~~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~D-l~~AT~lA~~mv----~~~Gm~~~ 699 (731)
++|++.+++ +++.+. +.+-|.- ++. -||.-.| ++...++|..+| .+||.+..
T Consensus 603 LAWT~vGGd--~L~IE~------~~~~Gkg--~l~-----lTG~LGdVMKESa~~A~s~vrs~a~~~~i~~~ 659 (782)
T COG0466 603 LAWTEVGGD--LLTIEA------VKMPGKG--KLT-----LTGSLGDVMKESAQAALSYVRSRAEKLGIDPD 659 (782)
T ss_pred eeeecCCce--EEEEEE------EEecCCc--cEE-----EeccHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999888 444432 1134443 333 3666666 445555555554 67887753
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=1.9e-21 Score=207.01 Aligned_cols=211 Identities=20% Similarity=0.303 Sum_probs=165.5
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCC---CCeEEEEcCCCCcHHHHHHHHHHhcC-------CcEEEeechhhH
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCSASEFV 402 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkAlA~elg-------vpfi~is~se~~ 402 (731)
+++|++++|++|.+++.++..++.+.+.|... ..++||+||||||||++|+++|..+. .+|+.+++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999998762 379999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC-
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p- 481 (731)
..|.|..+..++++|++|. ++||||||+|.+...++. .+......+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~------~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc------cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999998888899998874 469999999998643321 223345677888888743 3567888887643
Q ss_pred -C---CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHh-------CCCCCHHHHHHHHHH
Q 004770 482 -D---VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (731)
Q Consensus 482 -d---~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~-------t~G~SgadL~~Lv~e 550 (731)
+ .++|+|.+ ||+..|.|++++.+++.+|++.++.+.+..+.++. +..+... ..--+.++++++++.
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899999 99999999999999999999999988655554432 3334333 222268999999999
Q ss_pred HHHHHHh
Q 004770 551 AALLAGR 557 (731)
Q Consensus 551 Aa~~A~r 557 (731)
|......
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8765543
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-21 Score=208.02 Aligned_cols=236 Identities=26% Similarity=0.365 Sum_probs=179.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
+.-.|++|+-....+.+|+++...-.+.+. .-.+-++||+|||||||||++|+.||...|..+-.+.+.+..- .-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 344599999999999999998877665443 3456689999999999999999999999999998888877532 22
Q ss_pred ccchHHHHHHHHHHHhcCCe-EEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 004770 407 GMGASRVRDLFARAKKEAPS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (731)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~-ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (731)
.++...|.++|+.|++.... +|||||.|++.-.|... ..+...+..||.||-.-. +....++++.+||+|..+|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt---ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT---YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh---hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 34556789999999876544 89999999998777542 345667788999987643 3345688899999999999
Q ss_pred ccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCC----------------------Cccc---CCHHHHHHhCCCCC
Q 004770 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELP----------------------LAKD---IDLGDIASMTTGFT 540 (731)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~----------------------l~~d---vdl~~LA~~t~G~S 540 (731)
.|+-. |||..|+|++|..++|..+|..|+.+.-.. +..+ -.+.+.|+.|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99998 999999999999999999999998653110 1110 12566789999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 541 gadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
|++|..|+--....+.-...-.++...|++.++.
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 9999999865433333333445555556555543
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.4e-21 Score=210.90 Aligned_cols=208 Identities=28% Similarity=0.367 Sum_probs=162.3
Q ss_pred CcccccccCChHhHHHHH-HHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 328 TITFADVAGVDEAKEELE-EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~-eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
+-+|+.|+--.+.|++|. ++.+|++..+-|.+.|..--+|.|||||||||||+++.|+|++++..++.++.++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 378999999999999985 577779999999999999999999999999999999999999999999988876542
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccc--cch-HHHHHHHHHHHHhhcCCCCCC--cEEEEEEcCCC
Q 004770 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI--VSN-DEREQTLNQLLTEMDGFDSNS--AVIVLGATNRS 481 (731)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~--~~~-~e~~~~Ln~LL~emdg~~~~~--~VIVIaATN~p 481 (731)
.... ++.++..+. ..+||+|++||+-...+...... ... ....-+|..||+.+||.-+.. --|||.|||++
T Consensus 273 -~n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 273 -LDSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred -CcHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2233 777766554 34699999999865433221110 111 123458899999999997765 56888999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCC--CCHHHHHHH
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG--FTGADLANL 547 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G--~SgadL~~L 547 (731)
+.|||||+||||+|.+|++..-+.++-+.+++.++.... +..-.+++.+...+ .||||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~----~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE----DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC----CcchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999986532 12234445443333 589998543
No 45
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.7e-21 Score=180.50 Aligned_cols=130 Identities=45% Similarity=0.671 Sum_probs=117.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcC-CeEEEEcccchhhcccCCcccc
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRI 446 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~ 446 (731)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+.....++++|.+++..+ ||||||||+|.+....+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998889999999999999999888 99999999999987762 2
Q ss_pred cchHHHHHHHHHHHHhhcCCCCC-CcEEEEEEcCCCCCCCccccCCCccceEEEeeC
Q 004770 447 VSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (731)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~~~~-~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (731)
..+......++.|+..++..... .+++||++||.++.++++++| +||++.+++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 34566778899999999987765 569999999999999999998 89999999874
No 46
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.9e-21 Score=218.47 Aligned_cols=175 Identities=23% Similarity=0.359 Sum_probs=138.1
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-------
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE------- 403 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~------- 403 (731)
=+|.+|++++|+++.|++..-+.. |....+.++|+||||+|||+++|+||..+|..|+.++...+.+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 369999999999999988763321 2345678999999999999999999999999999999776654
Q ss_pred --HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCc----ccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 004770 404 --LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR----FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 404 --~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (731)
.|+|.++.++-+.++.....+| +++|||||+++..-++. +.+..++|++..++..+-.+. + .-++|++|||
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp-~-DLSkVLFicT 560 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVP-V-DLSKVLFICT 560 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccc-c-chhheEEEEe
Confidence 6999999999999999999999 99999999999544432 223334444433333222211 1 1368999999
Q ss_pred cCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHh
Q 004770 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (731)
Q Consensus 478 TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~ 517 (731)
.|..+.|+++|+. |+. .|+++-+..+|..+|.+.|+-
T Consensus 561 AN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 561 ANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 9999999999997 765 788888889999999998884
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.81 E-value=5.2e-19 Score=191.70 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=164.2
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
.+.+|+|++|++++++.|..++...+.+ ..++.++||+||||||||++|+++|++++..+..+++..+.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4568999999999999999888654322 34577899999999999999999999999998877765331
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh------cC-CC------CCCcEE
Q 004770 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM------DG-FD------SNSAVI 473 (731)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em------dg-~~------~~~~VI 473 (731)
....+..++... ..++||||||||.+.... ...+..++... +. .. .-.++.
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchHH------------HHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 122344444432 346799999999985321 11222222211 10 00 013478
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 004770 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (731)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~ 553 (731)
+|++||++..++++|++ ||...+.++.|+.+++.+|++..+...++.++++ .++.|++.+.| +++.+.++++.+..
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~ia~~~~G-~pR~a~~~l~~~~~ 228 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEE-GALEIARRSRG-TPRIANRLLRRVRD 228 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 89999999999999987 9998999999999999999999998877776655 37889999988 67999999998888
Q ss_pred HHHhhCCccccHHHHHHHHHH
Q 004770 554 LAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 554 ~A~r~~~~~It~~d~~~Aler 574 (731)
.|..++...|+.+++..+++.
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHH
Confidence 887766778999999999865
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.81 E-value=6.7e-19 Score=188.05 Aligned_cols=211 Identities=23% Similarity=0.321 Sum_probs=158.0
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccc
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~ 409 (731)
+|+|++|+++++++|..++...+.. ...+.+++|+||||||||+||+++|++++.++..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999999888643321 235678999999999999999999999999887766543211
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC----------------CCCcEE
Q 004770 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSAVI 473 (731)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------------~~~~VI 473 (731)
...+...+... ..+.||||||+|.+..... ..|+..|+... ...+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~---------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE---------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH---------------HHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12223333322 3467999999999864321 11222222111 123478
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 004770 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (731)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~ 553 (731)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+...+..++++ .++.+++.+.| .++.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G-~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRG-TPRIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCC-CcchHHHHHHHHHH
Confidence 99999999999999988 9988999999999999999999988766655544 46788999888 56888899998887
Q ss_pred HHHhhCCccccHHHHHHHHHH
Q 004770 554 LAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 554 ~A~r~~~~~It~~d~~~Aler 574 (731)
.|...+...|+.+++..++..
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 777666778999999999877
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=1.8e-19 Score=183.79 Aligned_cols=196 Identities=26% Similarity=0.363 Sum_probs=133.9
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+.-.+-+|+|++|++++++.++-+++..+.. .....++|||||||+|||+||+.+|++++++|...++..+.
T Consensus 15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 34456679999999999999998887764432 23456899999999999999999999999999999885431
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--------CC-----
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SN----- 469 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~----- 469 (731)
....+..++.... ...||||||||.+.+..+ ..|+..|+.+. .+
T Consensus 88 ------k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~q---------------e~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 88 ------KAGDLAAILTNLK--EGDILFIDEIHRLNKAQQ---------------EILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp ------SCHHHHHHHHT----TT-EEEECTCCC--HHHH---------------HHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred ------hHHHHHHHHHhcC--CCcEEEEechhhccHHHH---------------HHHHHHhccCeEEEEeccccccceee
Confidence 1233344444333 345999999999864432 34555555431 11
Q ss_pred ---CcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHH
Q 004770 470 ---SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (731)
Q Consensus 470 ---~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~ 546 (731)
.++.+|+||++...|.++|+. ||.....+..++.++..+|++......+++++++ ...+||+++.| +++-..+
T Consensus 145 ~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~-~~~~Ia~rsrG-tPRiAnr 220 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDED-AAEEIARRSRG-TPRIANR 220 (233)
T ss_dssp EE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HH-HHHHHHHCTTT-SHHHHHH
T ss_pred ccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHhcCC-ChHHHHH
Confidence 357899999999999999998 9998889999999999999998887766666555 36789999998 8998888
Q ss_pred HHHHHH
Q 004770 547 LVNEAA 552 (731)
Q Consensus 547 Lv~eAa 552 (731)
+++.+.
T Consensus 221 ll~rvr 226 (233)
T PF05496_consen 221 LLRRVR 226 (233)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 887654
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1e-19 Score=191.24 Aligned_cols=240 Identities=23% Similarity=0.283 Sum_probs=178.6
Q ss_pred cccccCChHhHHHHHHHHHH-hcChhHHhhh-CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeech
Q 004770 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSAS 399 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~-Lk~p~~~~~l-g~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------vpfi~is~s 399 (731)
|+.++--..+|++|...+.. ++-.++-..- -+...+-+||+||||||||+|+||+|+.+- ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 66777778889988887655 3322211110 123356699999999999999999999873 468999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcC---Ce--EEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 004770 400 EFVELYVGMGASRVRDLFARAKKEA---PS--IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~a---P~--ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (731)
.+.++|.+++.+.+..+|++..+.. .+ .++|||+++|+..|............-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 9999999999999999999887532 22 566999999998885443333344557899999999999999999999
Q ss_pred EEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc---CCCCCccc-------------CCHHHHHH-hCC
Q 004770 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK---KELPLAKD-------------IDLGDIAS-MTT 537 (731)
Q Consensus 475 IaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~---~~l~l~~d-------------vdl~~LA~-~t~ 537 (731)
++|+|-.+.||.|+.. |-|-+.++.+|+...+.+|++..+.. .++-.... .....++. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999998 99999999999999999999988754 12111111 11222233 358
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
|.||+.|+.|=-.|...- -....|+.++|..|+-.
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 999999988755443222 23357888888777643
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.79 E-value=2.2e-18 Score=206.29 Aligned_cols=164 Identities=28% Similarity=0.392 Sum_probs=128.1
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH---------
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--------- 402 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~--------- 402 (731)
+|++|++++|+++.+.+...+.. +...+..+||+||||||||++|+++|++++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 46999999999999877643221 112334799999999999999999999999999999876543
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC-----CC--------CC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-----~~--------~~ 469 (731)
..|+|.....+.+.|..+....| ||||||||.+.+..++. ..+.||..||. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24777778888889998887777 89999999998643321 12445554442 11 12
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHH
Q 004770 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (731)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l 516 (731)
+++++|+|||.++.|+++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999998 985 78999999999999998877
No 52
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.5e-18 Score=192.84 Aligned_cols=222 Identities=26% Similarity=0.397 Sum_probs=178.8
Q ss_pred HHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCC
Q 004770 346 EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAP 425 (731)
Q Consensus 346 eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP 425 (731)
++++.+..+..-...+......+||+|+||||||++++++|.++|.+++.++|.++...-.+..+.++...|.+|+...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 44444443332223344555679999999999999999999999999999999999998888889999999999999999
Q ss_pred eEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-CCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCC
Q 004770 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (731)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (731)
+|||+-++|.++.++++ +.+-..-+.++.++. .|.+. ...+++||++|+..+.|++.+++ -|-..|.++.|+
T Consensus 492 avifl~~~dvl~id~dg----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~ls 564 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQDG----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALS 564 (953)
T ss_pred eEEEEeccceeeecCCC----chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCC
Confidence 99999999999866553 233344556666665 33333 45789999999999999999998 677789999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh--------------------CCcccc
Q 004770 505 KIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL--------------------NKVVVE 564 (731)
Q Consensus 505 ~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~--------------------~~~~It 564 (731)
.++|.+||+.++... ++..++.+..++++|.||+.+|++.++..+.+.+..+ ....++
T Consensus 565 e~qRl~iLq~y~~~~--~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~ 642 (953)
T KOG0736|consen 565 EEQRLEILQWYLNHL--PLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLT 642 (953)
T ss_pred HHHHHHHHHHHHhcc--ccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceec
Confidence 999999999999764 6788999999999999999999999987763333211 126789
Q ss_pred HHHHHHHHHHHh
Q 004770 565 KIDFIHAVERSI 576 (731)
Q Consensus 565 ~~d~~~Alervi 576 (731)
++||..|+++..
T Consensus 643 ~edf~kals~~~ 654 (953)
T KOG0736|consen 643 EEDFDKALSRLQ 654 (953)
T ss_pred HHHHHHHHHHHH
Confidence 999999998743
No 53
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.9e-18 Score=190.20 Aligned_cols=233 Identities=24% Similarity=0.235 Sum_probs=179.3
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC----CcEEEeechhhHHHhhc
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVELYVG 407 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg----vpfi~is~se~~~~~vG 407 (731)
.|++-...+|++..+ ....| .-.+.++||+||+|+|||.|++++++++. +.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566667777775544 22222 34566799999999999999999999873 56777889888765566
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh-cCC-CCCCcEEEEEEcCCCCCCC
Q 004770 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-DGF-DSNSAVIVLGATNRSDVLD 485 (731)
Q Consensus 408 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em-dg~-~~~~~VIVIaATN~pd~LD 485 (731)
...+.++.+|..|.+++|+||++|++|.|....+. ..+..+...+.++.+|.++ +.+ ..+..+.|||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 66677899999999999999999999999873222 1234444555555555332 222 3345679999999999999
Q ss_pred ccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh----CCc
Q 004770 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL----NKV 561 (731)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~----~~~ 561 (731)
|-|.+|++|+.++.++.|+..+|.+||+..+.+... ....-|++-++..|+||...||..++++|...|.++ +..
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999987532 112225666999999999999999999999888732 334
Q ss_pred cccHHHHHHHHHHHhc
Q 004770 562 VVEKIDFIHAVERSIA 577 (731)
Q Consensus 562 ~It~~d~~~Alervi~ 577 (731)
.++.++|.++++....
T Consensus 635 lltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVP 650 (952)
T ss_pred cchHHHHHHHHHhcCh
Confidence 7899999999987553
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=8.9e-18 Score=181.67 Aligned_cols=209 Identities=30% Similarity=0.420 Sum_probs=147.6
Q ss_pred ccCCCcccccccCChHhHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 324 EQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~---L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
..-.+-+++|++|+++...+ |..+++ .....+++||||||||||+||+.||+..+.+|..+|+
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA-- 81 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA-- 81 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc--
Confidence 34456789999999987643 333332 2334579999999999999999999999999999988
Q ss_pred hHHHhhccchHHHHHHHHHHHhcC----CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 004770 401 FVELYVGMGASRVRDLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (731)
+-.+.+.++++++.|+... ..||||||||.+.+.++ ..||-.|+ +..|++|+
T Consensus 82 -----v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ---------------D~lLp~vE----~G~iilIG 137 (436)
T COG2256 82 -----VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ---------------DALLPHVE----NGTIILIG 137 (436)
T ss_pred -----ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh---------------hhhhhhhc----CCeEEEEe
Confidence 3456788999999996532 46999999999976655 34566665 56788888
Q ss_pred Ec--CCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCc------ccCCHHHHHHhCCCCCHHHHHHHH
Q 004770 477 AT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA------KDIDLGDIASMTTGFTGADLANLV 548 (731)
Q Consensus 477 AT--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~------~dvdl~~LA~~t~G~SgadL~~Lv 548 (731)
|| |..-.|.+||++++ +++++.+.+.++..++++..+......+. ++-.++.++..+.| ..+-.-|++
T Consensus 138 ATTENPsF~ln~ALlSR~---~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~L 213 (436)
T COG2256 138 ATTENPSFELNPALLSRA---RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLL 213 (436)
T ss_pred ccCCCCCeeecHHHhhhh---heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHH
Confidence 87 66678999999943 48899999999999999985443322222 12235666777766 344444555
Q ss_pred HHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 549 NEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 549 ~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
+.+...+. .+. .++.+++++.+.+..
T Consensus 214 E~~~~~~~-~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 214 ELAALSAE-PDE-VLILELLEEILQRRS 239 (436)
T ss_pred HHHHHhcC-CCc-ccCHHHHHHHHhhhh
Confidence 55554442 222 333666666665543
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=5.4e-18 Score=194.86 Aligned_cols=219 Identities=23% Similarity=0.301 Sum_probs=154.1
Q ss_pred CcccccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------
Q 004770 320 AKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------- 389 (731)
Q Consensus 320 ~~~~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---------- 389 (731)
....+..++.+|+|++|+++..+.|+..+ . ...+.++||+||||||||++|++++.++
T Consensus 53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~ 120 (531)
T TIGR02902 53 EPLSEKTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKE 120 (531)
T ss_pred chHHHhhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCC
Confidence 34556667889999999999988887542 1 2345689999999999999999998642
Q ss_pred CCcEEEeechhh-------HHHhhccchH----------------HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccc
Q 004770 390 EVPFISCSASEF-------VELYVGMGAS----------------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (731)
Q Consensus 390 gvpfi~is~se~-------~~~~vG~~~~----------------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (731)
+.+|+.++|... .+...+.... .-...+.+ ....+|||||||.|....+
T Consensus 121 ~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~~~q----- 192 (531)
T TIGR02902 121 GAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHPVQM----- 192 (531)
T ss_pred CCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCHHHH-----
Confidence 368999988631 1111111000 00112222 2345999999999864322
Q ss_pred cchHHHHHHHHHHHHhhcCC--------------------------CCCCcE-EEEEEcCCCCCCCccccCCCccceEEE
Q 004770 447 VSNDEREQTLNQLLTEMDGF--------------------------DSNSAV-IVLGATNRSDVLDPALRRPGRFDRVVM 499 (731)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~--------------------------~~~~~V-IVIaATN~pd~LDpALlRpGRFdr~I~ 499 (731)
+.||..|+.- .....+ +|++|||.|+.|+|++++ |+. .+.
T Consensus 193 ----------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~ 259 (531)
T TIGR02902 193 ----------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIF 259 (531)
T ss_pred ----------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eee
Confidence 3333333210 001223 455666789999999998 764 788
Q ss_pred eeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
+++++.+++.+|++..+++.++.+++++ ++.|+..+. +++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 260 f~pL~~eei~~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 260 FRPLLDEEIKEIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 9999999999999999988776666553 666777664 78999999999999998888889999999999853
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.1e-17 Score=173.83 Aligned_cols=216 Identities=23% Similarity=0.285 Sum_probs=170.5
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
-.+-+|+|.+|++++|+.|+-++..-+.. .....++|||||||.|||+||..+|+|+|+++-..++.-+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 34678999999999999999888764432 356778999999999999999999999999999888765522
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--------C--------C
Q 004770 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S--------N 469 (731)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~--------~ 469 (731)
+..+-.++.... ..+|+||||||++.+.- + .-|+..|+.|. + -
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v------------E---E~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRLSPAV------------E---EVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----hhhHHHHHhcCC--cCCeEEEehhhhcChhH------------H---HHhhhhhhheeEEEEEccCCccceEeccC
Confidence 223333333322 33599999999986432 1 23344454432 1 1
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHH
Q 004770 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (731)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~ 549 (731)
.++.+|+||.+...|...|+. ||.....+..++.++.++|++......++.+.++ ...+||+++.| +++-..+|++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChH-HHHHHHHhccC-CcHHHHHHHH
Confidence 357899999999999999998 9999999999999999999999887766665544 46778999988 8999999999
Q ss_pred HHHHHHHhhCCccccHHHHHHHHHHH
Q 004770 550 EAALLAGRLNKVVVEKIDFIHAVERS 575 (731)
Q Consensus 550 eAa~~A~r~~~~~It~~d~~~Alerv 575 (731)
+..-.|..++...|+.+-..+|++..
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 99999998999999998888888764
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.1e-17 Score=188.55 Aligned_cols=219 Identities=47% Similarity=0.700 Sum_probs=194.9
Q ss_pred hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEE
Q 004770 351 LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFI 430 (731)
Q Consensus 351 Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfI 430 (731)
+..+..+...+..+|++++++||||||||++++++|.+ +..++.+++.+...++.|......+.+|..+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677788999999999999999999999999999999 76668899999999999999999999999999999999999
Q ss_pred cccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHH
Q 004770 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (731)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~e 510 (731)
||+|.+.+.+.. .........+.+++..|+++.... +++++.||++..+|+++++||||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988764 234455778899999999988444 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC------CccccHHHHHHHHHHHhc
Q 004770 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------KVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~------~~~It~~d~~~Alervi~ 577 (731)
|++.+... .....+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 158 i~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 158 ILQIHTRL--MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHhc--CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99998865 345567899999999999999999999999998888774 456788999999988754
No 58
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=9.8e-18 Score=199.56 Aligned_cols=224 Identities=23% Similarity=0.288 Sum_probs=165.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~i 396 (731)
..-++++++|.++..+++.+++. .+...++||+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 44578999999998776555442 2345679999999999999999999987 6789999
Q ss_pred echhhH--HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 004770 397 SASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (731)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (731)
+++.+. ..|.|+.+++++++|+.+....|+||||||||.|.+.+... .+..+ .-+.|+..+. +..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~----~~~~L~~~l~----~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD----ASNLLKPALS----SGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH----HHHHHHHHHh----CCCeEE
Confidence 998888 47889999999999999988889999999999998654321 11111 1233444443 467899
Q ss_pred EEEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC----CCCCcccCCHHHHHHhCCCCC-----
Q 004770 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGFT----- 540 (731)
Q Consensus 475 IaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~t~G~S----- 540 (731)
|++||..+ .+|++|.| ||. .|.|+.|+.+++.+||+.+.... ++.+.++ .+..++..+..|-
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~-al~~~~~ls~ryi~~r~~ 390 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDE-ALEAAVELSARYINDRFL 390 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHH-HHHHHHHhhhcccccccC
Confidence 99998643 57999999 997 79999999999999999776542 2223333 3556666555543
Q ss_pred HHHHHHHHHHHHHHHHhh----CCccccHHHHHHHHHHHh
Q 004770 541 GADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 541 gadL~~Lv~eAa~~A~r~----~~~~It~~d~~~Alervi 576 (731)
+.....++++|+.....+ .+..|+.+|+..++.+..
T Consensus 391 P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 391 PDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 455577888877644322 245699999999998764
No 59
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.71 E-value=1.1e-16 Score=190.98 Aligned_cols=164 Identities=22% Similarity=0.349 Sum_probs=127.5
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--------
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~-------- 403 (731)
+|++|++++|+++.+.+...+.. +......++|+||||+|||++++++|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 46999999999999888754322 1123446999999999999999999999999999998765432
Q ss_pred -HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC-----CC--------CC
Q 004770 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (731)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-----~~--------~~ 469 (731)
.|.|.....+...+..+...+| ||+|||||.+....++. ....|+..+|. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-----------~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-----------PASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-----------HHHHHHHHhccccEEEEecccccccccC
Confidence 4777777788888887776667 89999999997653321 23455555552 11 12
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHh
Q 004770 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (731)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~ 517 (731)
++|++|||+|.. .|+++|+. ||+ .|.+..++.++..+|.+.|+.
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 679999999987 59999998 985 789999999999999999884
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.5e-16 Score=176.92 Aligned_cols=212 Identities=17% Similarity=0.223 Sum_probs=153.7
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEe
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf-------i~i 396 (731)
+...+-+|+||+|++++.+.|+..+.. .+.+..+||+||||||||++|+.+|+.+++.- ..+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 344667899999999999988887642 34566799999999999999999999987631 111
Q ss_pred -echhhHH----------HhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHH
Q 004770 397 -SASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (731)
Q Consensus 397 -s~se~~~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (731)
+|..+.. .....+...+|++.+.+.. ....|+||||+|.|.. ..+|.||.
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLK 143 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLK 143 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHH
Confidence 1111110 0011234556666655542 3456999999999852 35688898
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCH
Q 004770 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (731)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (731)
.|+. +...+++|.+|+.++.|.+++++ |. .++.|..++.++..+.++..+...++.++++ .+..|++.+.| +.
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G-d~ 216 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG-SV 216 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-hH
Confidence 8874 34678889999999999999998 64 3788999999999999999988777766555 58889999988 78
Q ss_pred HHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 542 adL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
++..++++.+...+ ...|+.+++.+.+
T Consensus 217 RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 217 RDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 99999988776432 2347777665544
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.1e-16 Score=177.66 Aligned_cols=206 Identities=19% Similarity=0.238 Sum_probs=149.8
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------- 391 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv------------- 391 (731)
..++.+|+|++|++++++.|+..+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 34567899999999998888876541 245677999999999999999999998865
Q ss_pred -----------cEEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 392 -----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 392 -----------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
.++.++++. ..+...+|++.+.+.. ....||||||+|.+.. ..+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~ 134 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAF 134 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHH
Confidence 233443321 1233456666655542 2346999999999842 234
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhC
Q 004770 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (731)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (731)
+.|+..++.. ...+++|++|+.+..+++++++ |+ ..+.+.+|+.++...+++..+...++.++++ .++.|++.+
T Consensus 135 ~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~e-al~~Ia~~s 208 (472)
T PRK14962 135 NALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDRE-ALSFIAKRA 208 (472)
T ss_pred HHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHh
Confidence 6778877743 3457777777778899999998 65 4899999999999999999988777766655 478888887
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 004770 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 537 ~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Ale 573 (731)
.| +.+.+.++++.+...+ + ..|+.+++.+++.
T Consensus 209 ~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 209 SG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred CC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 66 6677777776654432 2 2499999888774
No 62
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.71 E-value=2.3e-16 Score=187.14 Aligned_cols=222 Identities=22% Similarity=0.280 Sum_probs=158.6
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeec
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSA 398 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is~ 398 (731)
=.++.++|.++..+++.+++.. +.+.++||+||||||||++|+++|... ++.++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3577899999977776665532 234678999999999999999999864 456666666
Q ss_pred hhhH--HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 004770 399 SEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (731)
Q Consensus 399 se~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (731)
..++ ..|.|+.+.+++.+|+.+....++||||||||.|.+.+... ..... ..|.|...+ .+..+.||+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~---~g~~d---~~nlLkp~L----~~g~i~vIg 320 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVD---AANLIKPLL----SSGKIRVIG 320 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---CcHHH---HHHHHHHHH----hCCCeEEEe
Confidence 6666 46788889999999999988889999999999997654321 11112 222222222 246799999
Q ss_pred EcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCC-----HHHHHHh-----CCCCCH
Q 004770 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDID-----LGDIASM-----TTGFTG 541 (731)
Q Consensus 477 ATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvd-----l~~LA~~-----t~G~Sg 541 (731)
+||.++ .+|++|.| ||+ .|.|+.|+.+++.+||+.+..+... ..++. +...+.. ...+-|
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~--~h~v~i~~~al~~a~~ls~ryi~~r~lP 395 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEA--HHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhh--ccCCCcCHHHHHHHHHHhhccccCccCh
Confidence 999865 57999999 997 7999999999999999987654322 12222 2222222 234456
Q ss_pred HHHHHHHHHHHHHHH----hhCCccccHHHHHHHHHHHhc
Q 004770 542 ADLANLVNEAALLAG----RLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 542 adL~~Lv~eAa~~A~----r~~~~~It~~d~~~Alervi~ 577 (731)
.....++++|+.... ...+..|+.+|+.+.+.+...
T Consensus 396 dKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 788999999986543 223456888999998877554
No 63
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.69 E-value=5e-16 Score=175.44 Aligned_cols=225 Identities=19% Similarity=0.254 Sum_probs=151.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se 400 (731)
.+..+|++.+.-+.-......+.....+| .....+++||||||+|||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 35678999553233222222222222222 1234569999999999999999999987 56789999998
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
|...+.........+.|..... .+.+|+|||+|.+..+.. ..+.+-.++..+- .+...+||+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~----------~~~~l~~~~n~l~---~~~~~iiits~~~ 254 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER----------TQEEFFHTFNALH---EAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH----------HHHHHHHHHHHHH---HCCCcEEEECCCC
Confidence 8776554322212223332222 467999999999854321 1112222222221 1223466666655
Q ss_pred CCC---CCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 481 pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
|.. +++.|.+ ||. ..+.+.+|+.++|.+||+..+...++.+++++ ++.||....| +.++|..+++.....|
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHHHHH
Confidence 544 6788887 885 58999999999999999999987777777664 8888998877 8999999999888777
Q ss_pred HhhCCccccHHHHHHHHHHHh
Q 004770 556 GRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 556 ~r~~~~~It~~d~~~Alervi 576 (731)
...+ ..|+.+.+.+++...+
T Consensus 331 ~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 331 SLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HhhC-CCCCHHHHHHHHHHhh
Confidence 6554 5599999999998764
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.2e-15 Score=168.04 Aligned_cols=213 Identities=18% Similarity=0.187 Sum_probs=150.0
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE--------
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-------- 395 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~-------- 395 (731)
+...+.+|+||+|++++++.|+..+.. .+.|..+||+||||+|||++|+++|+++++....
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 334567899999999999998876642 2456678999999999999999999998642110
Q ss_pred eechhhHH-----Hh-----hccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHH
Q 004770 396 CSASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (731)
Q Consensus 396 is~se~~~-----~~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (731)
.+|.++.. .+ .......++++.+.+.. ....|++|||+|.+.. ...+.||.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk 141 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLK 141 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHH
Confidence 01111110 00 01233456666665432 2245999999998742 24467888
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCH
Q 004770 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (731)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (731)
.++.. ...+.+|.+|+.++.+.+++++ |+ ..+.+++|+.++..++++..+...+..++++ .++.++..+.| +.
T Consensus 142 ~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~ 214 (363)
T PRK14961 142 TLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SM 214 (363)
T ss_pred HHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88743 3456667777878889999887 64 4789999999999999999888766655444 46778888877 78
Q ss_pred HHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 004770 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 542 adL~~Lv~eAa~~A~r~~~~~It~~d~~~Ale 573 (731)
+++.++++.+... +...|+.+++.+++.
T Consensus 215 R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 215 RDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8888888877543 356788888877663
No 65
>PRK04195 replication factor C large subunit; Provisional
Probab=99.69 E-value=1e-15 Score=174.33 Aligned_cols=207 Identities=23% Similarity=0.285 Sum_probs=147.0
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
...+.+|+||+|.+++++.|.+.+..... ..+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~ 78 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA 78 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH
Confidence 34567899999999999999998865432 2457899999999999999999999999999999998875421
Q ss_pred hhccchHHHHHHHHHHHh------cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 405 YVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
..++.+...+.. ..+.||+|||+|.+....+ ...++.|+..++. .+..+|+++
T Consensus 79 ------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~~----~~~~iIli~ 137 (482)
T PRK04195 79 ------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIKK----AKQPIILTA 137 (482)
T ss_pred ------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHHc----CCCCEEEec
Confidence 223333332221 2467999999999864211 1234555555552 233466678
Q ss_pred CCCCCCCc-cccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 004770 479 NRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (731)
Q Consensus 479 N~pd~LDp-ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r 557 (731)
|.+..+++ .|++ | ...|.|+.|+..++..+++..+...++.++++ .++.|+..+.| |++.+++.....+
T Consensus 138 n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a-- 207 (482)
T PRK04195 138 NDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA-- 207 (482)
T ss_pred cCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh--
Confidence 88887777 5554 3 45899999999999999999998887776654 47788887654 7777777665543
Q ss_pred hCCccccHHHHHH
Q 004770 558 LNKVVVEKIDFIH 570 (731)
Q Consensus 558 ~~~~~It~~d~~~ 570 (731)
.+...|+.+++..
T Consensus 208 ~~~~~it~~~v~~ 220 (482)
T PRK04195 208 EGYGKLTLEDVKT 220 (482)
T ss_pred cCCCCCcHHHHHH
Confidence 2344566665543
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=6.1e-16 Score=179.87 Aligned_cols=210 Identities=18% Similarity=0.229 Sum_probs=151.2
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEe
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf-------i~i 396 (731)
+....-+|+||+|++++++.|+..++ ..+.+..+||+||+|||||++|+++|+.+++.- -.|
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 33456789999999999999988764 234567789999999999999999999887521 100
Q ss_pred -echhhH--------HH--hhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHH
Q 004770 397 -SASEFV--------EL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (731)
Q Consensus 397 -s~se~~--------~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (731)
+|..+. +. ....+...++++++.+.. ....|+||||+|.|.. ...|.||+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLK 141 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLK 141 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHH
Confidence 011110 00 011234557777776542 2346999999999842 34588888
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCH
Q 004770 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (731)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (731)
.|+.. ...+++|.+||.++.|.+.|++ |. .++.|..++.++..+.|+..+..+++.++++ .+..|++.+.| +.
T Consensus 142 tLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-sm 214 (830)
T PRK07003 142 TLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-SM 214 (830)
T ss_pred HHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88843 3578888899999999999998 54 5899999999999999999998777766544 57888899988 78
Q ss_pred HHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 004770 542 ADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (731)
Q Consensus 542 adL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (731)
++..+++.++.... ...|+.+++..
T Consensus 215 RdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 215 RDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 88888888776443 23455554433
No 67
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.68 E-value=3.3e-15 Score=163.30 Aligned_cols=224 Identities=23% Similarity=0.255 Sum_probs=153.3
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeec
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSA 398 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------vpfi~is~ 398 (731)
....++++|.++..++|...+..... ...+.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34456899999988888777653221 24456799999999999999999998652 57888887
Q ss_pred hhhHH----------Hhh--cc-------c-hHHHHHHHHHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHH
Q 004770 399 SEFVE----------LYV--GM-------G-ASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (731)
Q Consensus 399 se~~~----------~~v--G~-------~-~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (731)
..... ... +. . ...+..+++... ...+.||+|||+|.+.... ...+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~ 150 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLY 150 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHH
Confidence 54321 111 11 1 122344444443 2457799999999996221 12455
Q ss_pred HHHHhhcC-CCCCCcEEEEEEcCCCC---CCCccccCCCccc-eEEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHH
Q 004770 458 QLLTEMDG-FDSNSAVIVLGATNRSD---VLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLG 530 (731)
Q Consensus 458 ~LL~emdg-~~~~~~VIVIaATN~pd---~LDpALlRpGRFd-r~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~ 530 (731)
+|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+... ...+.+++ ++
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~-l~ 227 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV-IP 227 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH-HH
Confidence 66554221 12236789999999875 57888877 664 679999999999999999988621 11122222 23
Q ss_pred H---HHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 004770 531 D---IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (731)
Q Consensus 531 ~---LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alerv 575 (731)
. ++..+.| ..+.+.++++.|+..|..++...|+.+|+..|++..
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3 3444456 567778899999999988888899999999999875
No 68
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.68 E-value=1.1e-15 Score=170.32 Aligned_cols=222 Identities=21% Similarity=0.297 Sum_probs=148.6
Q ss_pred CCccccc-ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 004770 327 DTITFAD-VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (731)
Q Consensus 327 ~~vtf~D-V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se 400 (731)
+..+|++ ++|.+.. .....+......| ......++||||||+|||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~-~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNR-LAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHH-HHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 5678999 5564432 2222222222222 2234579999999999999999999986 67899999998
Q ss_pred hHHHhhccchH-HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 401 FVELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 401 ~~~~~vG~~~~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
|...+...... .+..+.+..+ .+.+|+|||+|.+..... ....+..++..+. .+...+||+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~----------~~~~l~~~~n~~~---~~~~~iiits~~ 241 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKER----------TQEEFFHTFNALH---ENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHH----------HHHHHHHHHHHHH---HCCCCEEEecCC
Confidence 87655432211 1222222222 356999999999854321 1122223333321 123345665655
Q ss_pred CCCC---CCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 480 RSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 480 ~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
.|.. +++.+.+ ||. ..+.+++|+.++|.+|++..+...++.+++++ ++.||.+..+ +.++|+.+++.....
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV-LEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 5543 5678887 775 57999999999999999999988777776654 7888988876 899999999988877
Q ss_pred HHhhCCccccHHHHHHHHHHHh
Q 004770 555 AGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 555 A~r~~~~~It~~d~~~Alervi 576 (731)
|...+ ..||.+.+.+++....
T Consensus 318 a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 318 ASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHhC-CCCCHHHHHHHHHHhc
Confidence 76544 6699999988887653
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.2e-15 Score=175.96 Aligned_cols=204 Identities=20% Similarity=0.236 Sum_probs=151.8
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------------
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------- 392 (731)
.++.+|+||+|++++++.|...+. ..+.+..+||+||||||||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 456789999999999999988775 23557789999999999999999999998762
Q ss_pred -----------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHH
Q 004770 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (731)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (731)
++.+++++ ..+...+|++...+.. ....|+||||+|.|.. ...|
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~N 136 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFN 136 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHH
Confidence 22222221 1234567777665532 3456999999998842 2457
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
.|+..|+.. ...+.+|.+|+.+..+++.+++ |. .++.|.+++.++..+.++..+.+.++.+.++ .+..|++.+.
T Consensus 137 ALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e-AL~~IA~~S~ 210 (702)
T PRK14960 137 ALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD-AIWQIAESAQ 210 (702)
T ss_pred HHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 888888743 3456777778888888888886 54 4899999999999999999998877766554 4778888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
| +.+++.+++..+... +...|+.+++...+
T Consensus 211 G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 211 G-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 7 888888888876543 34568888776644
No 70
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.68 E-value=1.1e-15 Score=170.92 Aligned_cols=202 Identities=29% Similarity=0.423 Sum_probs=146.7
Q ss_pred CCcccccccCChHhHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 327 DTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~---L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
++-+|+|++|++++... |.+++. . ..+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 45679999999998666 666553 1 234479999999999999999999999999999987532
Q ss_pred HhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc-
Q 004770 404 LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT- 478 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT- 478 (731)
+...++++++.+.. ....||||||+|.+... ..+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~---------------~q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA---------------QQDALLPHVED----GTITLIGATT 128 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH---------------HHHHHHHHhhc----CcEEEEEeCC
Confidence 33456667766642 35679999999988532 12455555552 456677665
Q ss_pred -CCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC--CC-CCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 479 -NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--EL-PLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 479 -N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~--~l-~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
|....+++++++ |+ ..+.+.+++.++..++++..+... ++ .+.++ .++.+++.+.| ..+.+.++++.+...
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s~G-d~R~aln~Le~~~~~ 203 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLANG-DARRALNLLELAALG 203 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334578999998 66 589999999999999999887642 22 33333 36677887755 677777877776643
Q ss_pred HHhhCCccccHHHHHHHHHHHh
Q 004770 555 AGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 555 A~r~~~~~It~~d~~~Alervi 576 (731)
...|+.+++.+++....
T Consensus 204 -----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 -----VDSITLELLEEALQKRA 220 (413)
T ss_pred -----cCCCCHHHHHHHHhhhh
Confidence 45689999988887643
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.9e-15 Score=172.25 Aligned_cols=215 Identities=19% Similarity=0.260 Sum_probs=157.8
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----------
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------- 393 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf---------- 393 (731)
....+-+|+|++|++++++.|+..+. ..+.+.++||+||||||||++|+++|+++++.-
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 34467789999999999998887653 235677899999999999999999999987631
Q ss_pred -EEe-echhhHHH----------hhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHH
Q 004770 394 -ISC-SASEFVEL----------YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (731)
Q Consensus 394 -i~i-s~se~~~~----------~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (731)
..+ +|..+.+. -...+...++++++.+... ...|++|||+|.+.. ..++
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~n 146 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFN 146 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHH
Confidence 111 11111110 0112456788888777532 345999999998842 3467
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
.|+..|+. +...+++|.+|+.++.+++++++ |. ..+.+..++.++..++++..+.+.+..++++ .++.|++.+.
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s~ 220 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKSE 220 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 88888873 34567777788888899999987 54 4788999999999999999998877665544 4778898887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
| +.+++.++++.+...+... ...|+.+++.+.+
T Consensus 221 G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 221 G-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 7 8999999999887665422 2368888777665
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.3e-16 Score=179.12 Aligned_cols=209 Identities=17% Similarity=0.229 Sum_probs=150.3
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------ 392 (731)
.....+|+||+|++++++.|++.+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 34567899999999999999887752 3456679999999999999999999998761
Q ss_pred EEEe-ech--------hhHHH--hhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHH
Q 004770 393 FISC-SAS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (731)
Q Consensus 393 fi~i-s~s--------e~~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (731)
+-.| +|. ++++. -...+...+|++.+.+.. ....|+||||+|.|.. ...|
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaN 142 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFN 142 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHH
Confidence 1111 111 11110 001234567777776543 3356999999999842 3468
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
.||+.|+. ...++++|.+||.++.|.+.+++ |. .++.|..++.++..+.|+..+...++.++++ .++.|++.+.
T Consensus 143 ALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A~ 216 (700)
T PRK12323 143 AMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAAQ 216 (700)
T ss_pred HHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 89999884 34567888899999999999998 54 4889999999999999998887766654433 3677888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (731)
| +.++..++++++.... ...|+.+++.+
T Consensus 217 G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 217 G-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred C-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 7 8899999988766432 23455554433
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=3.5e-15 Score=154.21 Aligned_cols=212 Identities=13% Similarity=0.150 Sum_probs=139.1
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~ 402 (731)
.+..+|++.+|.++.. .+..+.. . +. ......++||||||||||+|++|+|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~---~---~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRK---N---FI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHH---H---hh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3567899999877532 1111111 1 11 1122358999999999999999999985 3455555554321
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
.. ..+.++.. ....+|+|||++.+... ......+..+++.+. .....++|++++..|.
T Consensus 80 ~~--------~~~~~~~~--~~~dlLilDDi~~~~~~----------~~~~~~l~~l~n~~~--~~~~~illits~~~p~ 137 (229)
T PRK06893 80 YF--------SPAVLENL--EQQDLVCLDDLQAVIGN----------EEWELAIFDLFNRIK--EQGKTLLLISADCSPH 137 (229)
T ss_pred hh--------hHHHHhhc--ccCCEEEEeChhhhcCC----------hHHHHHHHHHHHHHH--HcCCcEEEEeCCCChH
Confidence 11 11222222 23569999999988532 122334555555443 1123345566666676
Q ss_pred CCC---ccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC
Q 004770 483 VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (731)
Q Consensus 483 ~LD---pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~ 559 (731)
.++ +.|.++.++...+.++.|+.++|.+|++..+...++.+++++ ++.|+++..| +.+.+.++++.....+. ..
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASL-QA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH-hc
Confidence 554 888886667789999999999999999999987777777664 7888998887 88999999887653333 33
Q ss_pred CccccHHHHHHHH
Q 004770 560 KVVVEKIDFIHAV 572 (731)
Q Consensus 560 ~~~It~~d~~~Al 572 (731)
+..||...+++++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 3468888887765
No 74
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.66 E-value=9.7e-15 Score=161.36 Aligned_cols=226 Identities=22% Similarity=0.235 Sum_probs=154.1
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV 402 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se~~ 402 (731)
....+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34567899999988877776643211 2345679999999999999999999876 5788999886432
Q ss_pred ----------HHhhc-------cchH-HHHHHHHHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh
Q 004770 403 ----------ELYVG-------MGAS-RVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (731)
Q Consensus 403 ----------~~~vG-------~~~~-~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (731)
....+ .... .+..+.+... ...+.||+|||+|.+..... ...+..|+..+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhh
Confidence 11111 0111 1222223222 23568999999999972211 23566777666
Q ss_pred cCCCCCCcEEEEEEcCCC---CCCCccccCCCcc-ceEEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHHHHHHhCC
Q 004770 464 DGFDSNSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 464 dg~~~~~~VIVIaATN~p---d~LDpALlRpGRF-dr~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~LA~~t~ 537 (731)
+.... .++.+|+++|.. +.+++.+.+ || ...|.+++++.++..+|++.++... ...+.++ .++.+++.+.
T Consensus 167 ~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~ 242 (394)
T PRK00411 167 EEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE-VLDLIADLTA 242 (394)
T ss_pred hccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh-HHHHHHHHHH
Confidence 54432 478888888875 356777765 55 3578999999999999999988642 1112222 3566666663
Q ss_pred CC--CHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 538 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 538 G~--SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
+. ..+.+.+++..|+..|..++...|+.+|+.+|+++..
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 32 3566678899999999988899999999999998763
No 75
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.8e-15 Score=173.06 Aligned_cols=205 Identities=17% Similarity=0.191 Sum_probs=151.2
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------ 392 (731)
...+-+|+||+|++++++.|...+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 34567899999999999999887752 3456679999999999999999999998763
Q ss_pred ------------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
++.++++ ...+...+|++.+.+.. ....|+||||+|.|.. ...
T Consensus 78 ~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~ 136 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSF 136 (509)
T ss_pred HHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHH
Confidence 3333322 12344557777765542 2345999999999852 245
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhC
Q 004770 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (731)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (731)
|.||..|+... ..+++|.+|+.+..+.+.+++ |. ..+++..++.++..+.++..+.+.++.+.++ .+..+++.+
T Consensus 137 naLLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~~s 210 (509)
T PRK14958 137 NALLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLARAA 210 (509)
T ss_pred HHHHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 78888888543 457777777888888888887 53 4788999999999999999988877766544 477788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 537 ~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
.| +.+++.++++.+... +...|+.+++.+.+
T Consensus 211 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 211 NG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred CC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 76 889999999877543 23457776665544
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=1.7e-15 Score=170.62 Aligned_cols=224 Identities=17% Similarity=0.243 Sum_probs=150.6
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se 400 (731)
.+..||++.+--+.-......+.....+| + ...+++||||||+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 46788999883333333333333332222 1 13469999999999999999999985 46789999999
Q ss_pred hHHHhhccch-HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 401 FVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 401 ~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
|...+..... ..+.+ |.......+.+|+|||+|.+..... ...+ +-.++..+. .....+||++.+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~------~q~e----lf~~~n~l~---~~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG------VQTE----LFHTFNELH---DSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH------HHHH----HHHHHHHHH---HcCCeEEEECCC
Confidence 8776543211 12222 3333334577999999998753321 1111 222233222 123346665556
Q ss_pred CCCC---CCccccCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 480 RSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 480 ~pd~---LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
.|.. +++.+.+ || ...+.+.+|+.+.|.+|++..+...++.+++++ ++.||+...+ +.++|+.+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6654 4567777 65 467889999999999999999987777777765 8888988877 889999999987766
Q ss_pred HHhhCCccccHHHHHHHHHHHh
Q 004770 555 AGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 555 A~r~~~~~It~~d~~~Alervi 576 (731)
+...+ ..||.+...+++...+
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHh
Confidence 65554 5699999999887664
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=4.2e-15 Score=172.97 Aligned_cols=204 Identities=21% Similarity=0.252 Sum_probs=149.9
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE------------
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF------------ 393 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf------------ 393 (731)
..+-+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++..
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 3567899999999999988887752 34566789999999999999999999987631
Q ss_pred ------------EEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHH
Q 004770 394 ------------ISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (731)
Q Consensus 394 ------------i~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (731)
+.++.+. ..+...+|++.+.+.. ....|+||||+|.|.. ...|
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~N 137 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFN 137 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHH
Confidence 1122110 1233556776665542 2345999999999852 3568
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
.||..|+. +...+++|.+|+.+..|.+.+++ | ..++.|..++.++..+.|+..+...++.+.+ ..+..|++.+.
T Consensus 138 ALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--R-C~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~-~aL~~Ia~~s~ 211 (647)
T PRK07994 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--R-CLQFHLKALDVEQIRQQLEHILQAEQIPFEP-RALQLLARAAD 211 (647)
T ss_pred HHHHHHHc--CCCCeEEEEecCCccccchHHHh--h-heEeeCCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcC
Confidence 99999984 34567777788889999999988 6 3689999999999999999988776665543 35777888888
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
| +.++..+++..|... +...|+.+++...+
T Consensus 212 G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 212 G-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7 889998998876533 23346666665544
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.1e-15 Score=175.82 Aligned_cols=196 Identities=21% Similarity=0.260 Sum_probs=142.2
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp-------fi~i 396 (731)
+..++.+|+||+|++++++.|+.++.. .+.+..+||+||||||||++|+++|+.+++. +..|
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 344567899999999999998877642 2456678999999999999999999998764 1111
Q ss_pred -echhhHHH-----h-h----ccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHH
Q 004770 397 -SASEFVEL-----Y-V----GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (731)
Q Consensus 397 -s~se~~~~-----~-v----G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (731)
+|-.+.+. + + ..+...+|++.+.+.. ....|+||||+|.|. ...+|.||.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLK 141 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLK 141 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHH
Confidence 11111110 0 0 1223456666655542 234599999999984 245689999
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCH
Q 004770 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (731)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (731)
.|+.. ...+++|.+|+.+..|.+.+++ |. .++.|..++.++..+.|+..+...++.+.++ .+..|++.+.| +.
T Consensus 142 tLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d~ 214 (944)
T PRK14949 142 TLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-SM 214 (944)
T ss_pred HHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 99843 3567777778888889999887 53 5899999999999999999887766554433 47778888887 78
Q ss_pred HHHHHHHHHHH
Q 004770 542 ADLANLVNEAA 552 (731)
Q Consensus 542 adL~~Lv~eAa 552 (731)
+++.+++..+.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 99999988776
No 79
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=2.4e-15 Score=181.11 Aligned_cols=217 Identities=21% Similarity=0.283 Sum_probs=152.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~i 396 (731)
..-++++++|.++..+ .++..|.. +...+++|+||||||||++|+.+|..+ +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~---~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIR---QMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHH---HHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4567899999999644 44443322 233479999999999999999999875 3457888
Q ss_pred echhhHH--HhhccchHHHHHHHHHHHh-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 004770 397 SASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (731)
Q Consensus 397 s~se~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (731)
+.+.+.. .|.|+.+.+++.+|+.+.. ..++||||||||.+.+.+... +..+ .-|-|+..+. +..+.
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d----~~n~Lkp~l~----~G~l~ 318 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD----AANLLKPALA----RGELR 318 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc----HHHHhhHHhh----CCCeE
Confidence 8877763 5888899999999999875 468899999999998654321 1111 1133444443 56789
Q ss_pred EEEEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC----CCCCcccCCHHHHHHhCCCCC----
Q 004770 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGFT---- 540 (731)
Q Consensus 474 VIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~t~G~S---- 540 (731)
+|+||+..+ .+|+||.| ||. .|.|+.|+.+++.+||+.+.... ++.+.++ .+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~-al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDE-AVVAAVELSHRYIPGRQ 394 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHH-HHHHHHHHccccccccc
Confidence 999998643 48999999 996 89999999999999987665432 2333332 4666777777663
Q ss_pred -HHHHHHHHHHHHHHHHhh-CCccccHHHHHH
Q 004770 541 -GADLANLVNEAALLAGRL-NKVVVEKIDFIH 570 (731)
Q Consensus 541 -gadL~~Lv~eAa~~A~r~-~~~~It~~d~~~ 570 (731)
+.....++++|+...... ....+..+++.+
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~ 426 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRR 426 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 567778899987665433 333344444433
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.5e-15 Score=168.21 Aligned_cols=203 Identities=18% Similarity=0.215 Sum_probs=154.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC---------------
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------------- 391 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--------------- 391 (731)
.+.+|+||+|++.+++.|+..+. ..+.|.++||+||||+|||++|+.+|+.+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 56789999999999998887654 2356778999999999999999999997643
Q ss_pred ---------cEEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHH
Q 004770 392 ---------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (731)
Q Consensus 392 ---------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (731)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.|.. ..+|.
T Consensus 77 ~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~Na 135 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNA 135 (491)
T ss_pred HHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHH
Confidence 223333321 1244668888777653 2346999999998842 35688
Q ss_pred HHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCC
Q 004770 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (731)
Q Consensus 459 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (731)
||..|+.. ...+++|.+|+.++.|.+.+++ |. ..+.+..++.++..+.++..+.+.++.++++ .++.|++.+.|
T Consensus 136 LLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e-AL~lIa~~s~G 209 (491)
T PRK14964 136 LLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE-SLKLIAENSSG 209 (491)
T ss_pred HHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 99998843 3457777788888889999987 54 4789999999999999999998877766555 47788888876
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 539 ~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
+.+++.++++.+...+. ..|+.+++.+.+
T Consensus 210 -slR~alslLdqli~y~~----~~It~e~V~~ll 238 (491)
T PRK14964 210 -SMRNALFLLEQAAIYSN----NKISEKSVRDLL 238 (491)
T ss_pred -CHHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Confidence 88999999988876542 368887776653
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.4e-15 Score=172.46 Aligned_cols=211 Identities=19% Similarity=0.271 Sum_probs=152.9
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEee
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISCS 397 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf-------i~is 397 (731)
..++.+|+||+|++++++.|+..+.. .+.+..+||+||+|+|||++|+++|++++++- -.|.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 34567899999999999999887652 35677899999999999999999999986531 1110
Q ss_pred -chhh-----HHH-----hhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh
Q 004770 398 -ASEF-----VEL-----YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (731)
Q Consensus 398 -~se~-----~~~-----~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (731)
|..+ .+. ....+...++++++.+.. ....||||||+|.|.. ..+|.||..
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLKt 142 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLKT 142 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHHH
Confidence 1000 000 112334567888776542 2346999999998742 345788888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHH
Q 004770 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (731)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (731)
|+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++..++|+..+...++.++++ .+..|++.+.| +.+
T Consensus 143 LEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-slR 215 (709)
T PRK08691 143 LEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SMR 215 (709)
T ss_pred HHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CHH
Confidence 8843 3456777788888889888886 64 4678889999999999999998877766544 47888888876 899
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 543 dL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
++.++++.+... +...|+.+++...+
T Consensus 216 dAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 216 DALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 999999887654 23457777766654
No 82
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=7.5e-15 Score=167.71 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=149.5
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp----------- 392 (731)
....+.+|+||+|++++++.|+.++.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 344677899999999999999888753 2456668999999999999999999988541
Q ss_pred ------------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
++.++.++ ..+...++++.+.+.. ..+.||+|||+|.+. ...+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~ 133 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAF 133 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHH
Confidence 22333211 1234556666554442 345699999998763 2346
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhC
Q 004770 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (731)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (731)
+.|+..|+.. ...+++|.+||.+..+.+.+.+ |. ..+.|..|+.++..+.++..+.+.++.++++ .++.|++.+
T Consensus 134 naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~s 207 (504)
T PRK14963 134 NALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARLA 207 (504)
T ss_pred HHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888743 3456777788888999999987 54 3799999999999999999998877766544 477788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 537 ~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
.| +.+++.++++.+... ...|+.+++.+.+
T Consensus 208 ~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 208 DG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred CC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 76 677777777766432 2357777766654
No 83
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.64 E-value=3.7e-15 Score=151.93 Aligned_cols=206 Identities=17% Similarity=0.218 Sum_probs=137.5
Q ss_pred CCcccccccC--ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 004770 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (731)
Q Consensus 327 ~~vtf~DV~G--~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~ 401 (731)
...+|++.+. .+.+.+.+++++. ...+.+++|+||||||||++|+++++++ +.+++++++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3467888873 4445555555432 2346789999999999999999999876 578999999887
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
.... .+++.... .+.+|+|||+|.+.... +....+..++..+.. ....+|++++..+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~~---~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP----------EWQEALFHLYNRVRE---AGGRLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHHH---cCCeEEEECCCCh
Confidence 6432 22333222 24599999999885321 112233444443321 1223444444344
Q ss_pred CCCC---ccccCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 004770 482 DVLD---PALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (731)
Q Consensus 482 d~LD---pALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~ 556 (731)
..++ +.|.+ || ..++.+++|+.+++..+++.++.+.++++.++ .++.|+....| +.+++.++++++...+.
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~l~~L~~~~~g-n~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE-VADYLLRHGSR-DMGSLMALLDALDRASL 210 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 4332 66766 54 57899999999999999999887666666655 36778886554 89999999999876665
Q ss_pred hhCCccccHHHHHHHH
Q 004770 557 RLNKVVVEKIDFIHAV 572 (731)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (731)
..+ ..|+.+.+.+.+
T Consensus 211 ~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 AAK-RKITIPFVKEVL 225 (226)
T ss_pred HhC-CCCCHHHHHHHh
Confidence 544 568887776654
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.64 E-value=1.5e-14 Score=156.09 Aligned_cols=209 Identities=19% Similarity=0.221 Sum_probs=137.8
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeechh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASE 400 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-----vpfi~is~se 400 (731)
..+.+|++++|.+++++.|..++.. ....++||+||||||||++|+++++++. .+++.+++++
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 3566799999999999998887641 1223699999999999999999999874 4578888877
Q ss_pred hHHHh---h----------cc-------chHHHHHHHHHHHh-----cCCeEEEEcccchhhcccCCcccccchHHHHHH
Q 004770 401 FVELY---V----------GM-------GASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (731)
Q Consensus 401 ~~~~~---v----------G~-------~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (731)
+.... . +. ....++.+.+.... ..+.+|+|||+|.+... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---------------~ 141 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---------------A 141 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH---------------H
Confidence 64321 0 10 11223333333322 22459999999987421 1
Q ss_pred HHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHh
Q 004770 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (731)
Q Consensus 456 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (731)
.+.|+..++.... . ..+|.+++.+..+.+.|.+ |. ..+.+.+|+.++..++++..+.+.++.++++ .++.++..
T Consensus 142 ~~~L~~~le~~~~-~-~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~~~ 215 (337)
T PRK12402 142 QQALRRIMEQYSR-T-CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIAYY 215 (337)
T ss_pred HHHHHHHHHhccC-C-CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 2334444443332 2 3344556566677778876 54 4789999999999999999998877766544 57778887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 004770 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 536 t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Ale 573 (731)
+.| +.+++.+.++ ..+. ....||.+++.+++.
T Consensus 216 ~~g-dlr~l~~~l~---~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 216 AGG-DLRKAILTLQ---TAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred cCC-CHHHHHHHHH---HHHH--cCCCCCHHHHHHHhC
Confidence 744 5555544444 3332 234699998887664
No 85
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.2e-14 Score=168.05 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=152.3
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------ 392 (731)
...+.+|+||+|++++++.|+..+.. .+.++.+||+||+|||||++|+.+|+.++++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 34567899999999999999887653 3456779999999999999999999987542
Q ss_pred ------------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
++.++++ .+.+...++++.+.+.. ....|++|||+|.|.. ..+
T Consensus 78 ~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~ 136 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAF 136 (559)
T ss_pred HHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHH
Confidence 2222221 12345667888777653 2345999999998842 356
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhC
Q 004770 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (731)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (731)
|.||..++. +...+++|.+|+.++.|++.+++ |.. .+.|..|+.++..++++..+.+.++.++++ .+..+++.+
T Consensus 137 naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~s 210 (559)
T PRK05563 137 NALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARAA 210 (559)
T ss_pred HHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 888988874 34567777778888999999987 643 688999999999999999998877766544 477788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 537 ~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
.| +.+++.++++.+...+ ...|+.+++.+.+
T Consensus 211 ~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 211 EG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 77 8888888888776543 3457777665543
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.62 E-value=1.3e-14 Score=148.89 Aligned_cols=202 Identities=17% Similarity=0.174 Sum_probs=136.9
Q ss_pred CCcccccccC--ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 004770 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (731)
Q Consensus 327 ~~vtf~DV~G--~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~ 401 (731)
+..+|+++++ .+++...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 4578999773 3444444444332 23345689999999999999999999875 678888988776
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC-
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR- 480 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~- 480 (731)
.... . ....+.+|+|||+|.+.... ...+..++..+. .+...++|.+++.
T Consensus 82 ~~~~------------~--~~~~~~~liiDdi~~l~~~~------------~~~L~~~~~~~~---~~~~~~vl~~~~~~ 132 (227)
T PRK08903 82 LLAF------------D--FDPEAELYAVDDVERLDDAQ------------QIALFNLFNRVR---AHGQGALLVAGPAA 132 (227)
T ss_pred HHHH------------h--hcccCCEEEEeChhhcCchH------------HHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 4321 1 12235699999999874211 223334444332 2333334444443
Q ss_pred CC--CCCccccCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 004770 481 SD--VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (731)
Q Consensus 481 pd--~LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~ 556 (731)
|. .+.+.|.+ || ...+.+++|+.+++..+++.+..+.++.++++ .++.|++..+| +.+++.++++.-...|.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 31 34566765 65 57899999999999999998887777777665 47788887666 89999999998665554
Q ss_pred hhCCccccHHHHHHHHH
Q 004770 557 RLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 557 r~~~~~It~~d~~~Ale 573 (731)
. .+..||...+.+++.
T Consensus 209 ~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 E-QKRPVTLPLLREMLA 224 (227)
T ss_pred H-hCCCCCHHHHHHHHh
Confidence 4 447899888887763
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.62 E-value=1.2e-14 Score=158.26 Aligned_cols=207 Identities=20% Similarity=0.262 Sum_probs=150.2
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp----------- 392 (731)
+..++.+|+|++|++++++.|.+.+.. .+.|..+||+||||+|||++|+++|+.+.++
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 344668899999999999988887642 3456779999999999999999999987543
Q ss_pred -------------EEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHH
Q 004770 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (731)
Q Consensus 393 -------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (731)
++.+++.+ ......++++++.+... ...||+|||+|.+.. ..
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~ 133 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SA 133 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HH
Confidence 22222210 12334567777766532 235999999998742 24
Q ss_pred HHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHh
Q 004770 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (731)
Q Consensus 456 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (731)
.+.|+..++.. ...+++|.+|+.++.+.+++.+ |+ ..+++++|+.++..++++.++.+.++.++++ .+..++..
T Consensus 134 ~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~ 207 (355)
T TIGR02397 134 FNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARA 207 (355)
T ss_pred HHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 57788888743 3456777778888888889887 65 4789999999999999999998877666543 46667777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 004770 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 536 t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Ale 573 (731)
+.| +.+.+.+.++.+...+ ...|+.+++.+++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 766 7778878777766553 23488888877653
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=168.95 Aligned_cols=210 Identities=16% Similarity=0.234 Sum_probs=150.6
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------E
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------F 393 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------f 393 (731)
..+-+|+||+|++++++.|+.++.. .+.+..+||+||+|||||++|+++|+.+++. +
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3557899999999999999887752 3456678999999999999999999998752 1
Q ss_pred EEe-echhh--------HHH--hhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHHH
Q 004770 394 ISC-SASEF--------VEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (731)
Q Consensus 394 i~i-s~se~--------~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (731)
-.| +|..+ .+. ....+...+|++.+.+... .-.|++|||+|.|.. ..+|.
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~Na 143 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAFNA 143 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHHHH
Confidence 111 11111 110 0112345677777765432 235999999999852 24688
Q ss_pred HHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCC
Q 004770 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (731)
Q Consensus 459 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (731)
||..|+. ....+++|.+|+.+..+.+.+++ |. .++.|..++.++..+.|+..+.+.++.++++ .+..|++.+.|
T Consensus 144 LLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s~G 217 (618)
T PRK14951 144 MLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAARG 217 (618)
T ss_pred HHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 8888874 33566777777888888888887 53 5899999999999999999988777766543 47888888877
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 539 ~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
+.+++.++++.+.... ...|+.+++.+.+
T Consensus 218 -slR~al~lLdq~ia~~----~~~It~~~V~~~L 246 (618)
T PRK14951 218 -SMRDALSLTDQAIAFG----SGQLQEAAVRQML 246 (618)
T ss_pred -CHHHHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 8889988887766542 3457777766554
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.61 E-value=9.6e-15 Score=172.68 Aligned_cols=212 Identities=21% Similarity=0.292 Sum_probs=143.3
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+..++-+|+|++|++++......+...+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 3444567899999999988543222222221 223469999999999999999999999999988887531
Q ss_pred HHhhccchHHHHHHHHHHH-----hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 004770 403 ELYVGMGASRVRDLFARAK-----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (731)
+...+++.++.+. .....||||||||.+.... .+.|+..++ +..+++|++
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q---------------QdaLL~~lE----~g~IiLI~a 143 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ---------------QDALLPWVE----NGTITLIGA 143 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH---------------HHHHHHHhc----CceEEEEEe
Confidence 1233444444442 1245699999999985321 234555554 245777776
Q ss_pred cC--CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHh-------cCCCCCcccCCHHHHHHhCCCCCHHHHHHHH
Q 004770 478 TN--RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (731)
Q Consensus 478 TN--~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~-------~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv 548 (731)
|+ ....+++++++ | ...+.+++++.+++..+++..+. ..++.++++ .++.|++...| ..+++.+++
T Consensus 144 TTenp~~~l~~aL~S--R-~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 144 TTENPYFEVNKALVS--R-SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred cCCChHhhhhhHhhc--c-ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhCCC-CHHHHHHHH
Confidence 63 33568899988 4 24789999999999999999886 233444444 36778888866 788888988
Q ss_pred HHHHHHHHhhC--CccccHHHHHHHHHH
Q 004770 549 NEAALLAGRLN--KVVVEKIDFIHAVER 574 (731)
Q Consensus 549 ~eAa~~A~r~~--~~~It~~d~~~Aler 574 (731)
+.|...+.... ...|+.+++.+++.+
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 88775442222 223677777776654
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=99.61 E-value=1.2e-14 Score=157.32 Aligned_cols=202 Identities=20% Similarity=0.217 Sum_probs=138.2
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----cEEEeech
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISCSAS 399 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-----pfi~is~s 399 (731)
...+.+|+|++|.+++++.|+.++.. ...| ++||+||||||||++|+++|+++.. .++.++.+
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 34667899999999999988876541 1223 5999999999999999999999732 35666665
Q ss_pred hhHHHhhccchHHHHHHHHHHH-------hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 004770 400 EFVELYVGMGASRVRDLFARAK-------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (731)
+.. +...+++..+... ...+.|++|||+|.+.... .+.|+..|+.+.. ..
T Consensus 74 d~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a---------------q~aL~~~lE~~~~--~t 130 (319)
T PLN03025 74 DDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA---------------QQALRRTMEIYSN--TT 130 (319)
T ss_pred ccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH---------------HHHHHHHHhcccC--Cc
Confidence 432 1223444333211 1235699999999985322 2455565654333 34
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 004770 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (731)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa 552 (731)
.+|.+||.+..+.++|++ |. ..+.++.|+.++..+.++..+++.++.+.++ .++.++..+.| +.+.+.+.++.+
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~-~l~~i~~~~~g-DlR~aln~Lq~~- 204 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE-GLEAIIFTADG-DMRQALNNLQAT- 204 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH-
Confidence 566678888888899987 54 4789999999999999999998888777655 47778887765 555555555422
Q ss_pred HHHHhhCCccccHHHHHHH
Q 004770 553 LLAGRLNKVVVEKIDFIHA 571 (731)
Q Consensus 553 ~~A~r~~~~~It~~d~~~A 571 (731)
+ .+...|+.+++.+.
T Consensus 205 --~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 205 --H--SGFGFVNQENVFKV 219 (319)
T ss_pred --H--hcCCCCCHHHHHHH
Confidence 1 12346777776543
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.61 E-value=1.3e-14 Score=154.94 Aligned_cols=215 Identities=28% Similarity=0.409 Sum_probs=146.0
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeech
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSAS 399 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp---fi~is~s 399 (731)
.+.-.+-+++|.+|++++..+ ..++..+... .+.| .++||||||||||+||+.|+....-+ |+.+++.
T Consensus 129 aermRPktL~dyvGQ~hlv~q-~gllrs~ieq-------~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------NRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhhcCcchHHHhcchhhhcCc-chHHHHHHHc-------CCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 344456789999999987765 3333222111 1233 59999999999999999999988766 8887763
Q ss_pred hhHHHhhccchHHHHHHHHHHHh-----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 004770 400 EFVELYVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (731)
......+|++|++++. ....|||||||+.+.+.+++ .||-.++ +..|++
T Consensus 200 -------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD---------------~fLP~VE----~G~I~l 253 (554)
T KOG2028|consen 200 -------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD---------------TFLPHVE----NGDITL 253 (554)
T ss_pred -------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh---------------cccceec----cCceEE
Confidence 3455779999999975 34579999999999776653 2333333 466888
Q ss_pred EEEc--CCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHh---cC---CCCCcc------cCCHHHHHHhCCCCC
Q 004770 475 LGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS---KK---ELPLAK------DIDLGDIASMTTGFT 540 (731)
Q Consensus 475 IaAT--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~---~~---~l~l~~------dvdl~~LA~~t~G~S 540 (731)
|+|| |..-.|..+|++++| ++.+.....++...||.+-+. +- .-++.. +-.++.++..+.|=.
T Consensus 254 IGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 8887 555689999998554 788999999999999988543 11 111221 113667788888854
Q ss_pred HHHHHHHHHHH-HHHHHhh---CCccccHHHHHHHHHHHh
Q 004770 541 GADLANLVNEA-ALLAGRL---NKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 541 gadL~~Lv~eA-a~~A~r~---~~~~It~~d~~~Alervi 576 (731)
.+.|. .++.+ .+...|. .+..++.+|+.+++.+..
T Consensus 331 R~aLN-~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 331 RAALN-ALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHH-HHHHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 44443 33333 2222333 356788999999987754
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.9e-14 Score=165.53 Aligned_cols=210 Identities=20% Similarity=0.255 Sum_probs=148.6
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEee-
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISCS- 397 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf-------i~is- 397 (731)
..+.+|+||+|++++++.|...+.. .+.+..+||+||||+|||++|+++|+.+++.. -.|+
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3456899999999999988887652 34566789999999999999999999987631 1110
Q ss_pred chhh-----HHH-----hhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh
Q 004770 398 ASEF-----VEL-----YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (731)
Q Consensus 398 ~se~-----~~~-----~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (731)
|..+ .+. -...+...+|++.+.+.. ....|++|||+|.+.. ...|.||..|
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~L 143 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKTL 143 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHHH
Confidence 0000 000 001234567777776643 2345999999998852 3458889988
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHH
Q 004770 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (731)
Q Consensus 464 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sgad 543 (731)
+. +...+++|.+|+.++.+.+.+++ |. ..+.|..++.++..+.++..+.+.++.++++ .+..+++.+.| +.++
T Consensus 144 Ee--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-slr~ 216 (527)
T PRK14969 144 EE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SMRD 216 (527)
T ss_pred hC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 85 33566777777778888888877 53 5889999999999999998887766654433 46778888776 7899
Q ss_pred HHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 544 LANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 544 L~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
+.++++.+... +...|+.+++.+.+
T Consensus 217 al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 217 ALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 99998887654 34557776666544
No 93
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=2.3e-14 Score=165.08 Aligned_cols=225 Identities=20% Similarity=0.240 Sum_probs=151.4
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se 400 (731)
.+..+|++++.-+.-......+.....++ ......++|||++|+|||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~-------~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAP-------AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCc-------cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 35689999874443222222222222221 1123349999999999999999999976 57889999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
|.+.+.........+.|.... ..+++|+||||+.+..+.. ....+-.+++.+. .+.+-+|| |+|.
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~----------tqeeLF~l~N~l~---e~gk~III-TSd~ 419 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES----------TQEEFFHTFNTLH---NANKQIVL-SSDR 419 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH----------HHHHHHHHHHHHH---hcCCCEEE-ecCC
Confidence 987765443322233344332 3467999999998854321 1122333444332 12233444 5554
Q ss_pred -C---CCCCccccCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 481 -S---DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 481 -p---d~LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
| ..+++.|.+ || ...+.|..||.+.|.+||+.++...++.+.+++ ++.|+.+..+ +.++|+.+++.....
T Consensus 420 ~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL~a~ 495 (617)
T PRK14086 420 PPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRVTAF 495 (617)
T ss_pred ChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHH
Confidence 3 357888988 76 567899999999999999999998888877664 7778888766 789999999987766
Q ss_pred HHhhCCccccHHHHHHHHHHHhc
Q 004770 555 AGRLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 555 A~r~~~~~It~~d~~~Alervi~ 577 (731)
|...+ ..|+.+.+++++...+.
T Consensus 496 a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 496 ASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHhhC-CCCCHHHHHHHHHHhhc
Confidence 65544 56899888888876543
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=3.3e-14 Score=152.74 Aligned_cols=206 Identities=19% Similarity=0.268 Sum_probs=132.9
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+..++.+|+|++|.+++++.+...+. ..+.|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 44567889999999999998888774 1345666777999999999999999999999999998876 11
Q ss_pred HhhccchHHHHHHHHHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 404 LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
.......+.+...... ...++||+|||+|.+... .....+..+ ++... .++.+|.+||.++
T Consensus 81 --~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L~~~---le~~~--~~~~~Ilt~n~~~ 142 (316)
T PHA02544 81 --IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHLRSF---MEAYS--KNCSFIITANNKN 142 (316)
T ss_pred --HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHHHHH---HHhcC--CCceEEEEcCChh
Confidence 1111111222111111 135779999999987311 112233333 44332 4567888999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHh-------cCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~-------~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
.+++++++ ||. .+.++.|+.+++.++++.++. ..+.++.++ .+..++....| +++.+++.....+
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~~ 214 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRYA 214 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 99999998 774 789999999999877765433 234444333 24556665543 4555554444333
Q ss_pred HhhCCccccHHHHHH
Q 004770 556 GRLNKVVVEKIDFIH 570 (731)
Q Consensus 556 ~r~~~~~It~~d~~~ 570 (731)
. ...++..++..
T Consensus 215 ~---~~~i~~~~l~~ 226 (316)
T PHA02544 215 S---TGKIDAGILSE 226 (316)
T ss_pred c---cCCCCHHHHHH
Confidence 2 23466655443
No 95
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.60 E-value=4.8e-14 Score=146.37 Aligned_cols=206 Identities=14% Similarity=0.125 Sum_probs=135.2
Q ss_pred CCccccccc-C-ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 004770 327 DTITFADVA-G-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (731)
Q Consensus 327 ~~vtf~DV~-G-~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~ 401 (731)
+..+|++.+ | ...+...++++.. . ..+..++|+||||||||+|++++++++ +..+.+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456788887 4 3344444444321 1 123479999999999999999999875 345566666553
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCc-EEEEEEcCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~-VIVIaATN~ 480 (731)
.... ..+.+.++. ..+|+|||+|.+..+ +..+..+..+++.+-. +.+ -+++++++.
T Consensus 85 ~~~~-----~~~~~~~~~-----~dlliiDdi~~~~~~----------~~~~~~lf~l~n~~~e---~g~~~li~ts~~~ 141 (235)
T PRK08084 85 AWFV-----PEVLEGMEQ-----LSLVCIDNIECIAGD----------ELWEMAIFDLYNRILE---SGRTRLLITGDRP 141 (235)
T ss_pred hhhh-----HHHHHHhhh-----CCEEEEeChhhhcCC----------HHHHHHHHHHHHHHHH---cCCCeEEEeCCCC
Confidence 2211 112222221 248999999988532 2223344444444321 222 355555566
Q ss_pred CCC---CCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 481 pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
|.. +.|.|++ |+. .++.+.+|+.+++.++++.++...++.+++++ ++.|+++..+ +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 655 5789988 764 78999999999999999998877777777664 7888998887 8999999999864333
Q ss_pred HhhCCccccHHHHHHHH
Q 004770 556 GRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 556 ~r~~~~~It~~d~~~Al 572 (731)
. ..+..||...+.+++
T Consensus 218 l-~~~~~it~~~~k~~l 233 (235)
T PRK08084 218 I-TAQRKLTIPFVKEIL 233 (235)
T ss_pred H-hcCCCCCHHHHHHHH
Confidence 3 334558888877765
No 96
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=1.6e-14 Score=174.36 Aligned_cols=166 Identities=25% Similarity=0.368 Sum_probs=127.2
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~i 396 (731)
..-++++++|.++..+++.+++ .. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL---~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVL---QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHH---hc---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 4457899999998655444443 22 233579999999999999999999987 7899999
Q ss_pred echhhH--HHhhccchHHHHHHHHHHHh-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 004770 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (731)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (731)
+.+.++ .+|.|..+.+++.+|+.+.. ..|+||||||+|.+.+.+... +..+. -+-|...+ .+..+.
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~----~~~lkp~l----~~g~l~ 309 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDA----GNMLKPAL----ARGELH 309 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhH----HHHhcchh----hcCCCe
Confidence 888877 35889999999999998644 568999999999998654321 12221 12222222 356799
Q ss_pred EEEEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 004770 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (731)
Q Consensus 474 VIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (731)
+|+||+..+ .+|+|+.| ||+ .|.++.|+.+++..||+.+..+
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999999876 48999999 998 6889999999999999887654
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.1e-14 Score=162.41 Aligned_cols=205 Identities=20% Similarity=0.277 Sum_probs=145.7
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------ 392 (731)
...+.+|+||+|++++++.|...+.. .+.+..+||+||||+|||++|+++|+.+++.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34567899999999999988877642 2456679999999999999999999987641
Q ss_pred ------------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
++.+++. ...+...++++.+.+.. ....|+||||+|.+.. ...
T Consensus 78 sC~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~ 136 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSF 136 (546)
T ss_pred HHHHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHH
Confidence 1222211 11223445666655542 2345999999998842 345
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhC
Q 004770 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (731)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (731)
|.||..|+.. ...+++|.+|+.+..+.+.+++ |. ..++|..++.++..+.++..+.+.++.+.++ .++.++..+
T Consensus 137 naLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~s 210 (546)
T PRK14957 137 NALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYHA 210 (546)
T ss_pred HHHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888843 3456666677778888888877 53 5899999999999999999887766655433 467788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 537 ~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
.| +.+++.++++.+..... ..|+.+++.+++
T Consensus 211 ~G-dlR~alnlLek~i~~~~----~~It~~~V~~~l 241 (546)
T PRK14957 211 KG-SLRDALSLLDQAISFCG----GELKQAQIKQML 241 (546)
T ss_pred CC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHHH
Confidence 66 88888888887765432 346666666543
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.2e-14 Score=165.91 Aligned_cols=206 Identities=19% Similarity=0.229 Sum_probs=147.3
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp----------- 392 (731)
+...+.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 444677899999999999999887742 2446679999999999999999999998763
Q ss_pred -------------EEEeechhhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcccchhhcccCCcccccchHHHHHH
Q 004770 393 -------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (731)
Q Consensus 393 -------------fi~is~se~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (731)
++.+++.. ..+...++.+.+.+. .....||||||+|.|.. ..
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a 135 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EA 135 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------HH
Confidence 22232210 112234454433332 23356999999999842 23
Q ss_pred HHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHh
Q 004770 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (731)
Q Consensus 456 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (731)
.+.||..|+.. ...+++|.+||.++.+.+.+++ |+ .++.|..++.++..++|+..+.+.++.++++ .++.|++.
T Consensus 136 ~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA~~ 209 (624)
T PRK14959 136 FNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIARR 209 (624)
T ss_pred HHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 57888888743 3467888888888888888887 54 3789999999999999998887766655544 47778888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 536 t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
+.| +.+++.+++++++ + .+...|+.+++.+++
T Consensus 210 s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 210 AAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred cCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 876 6777777777653 2 244578888876665
No 99
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=2.9e-14 Score=160.77 Aligned_cols=228 Identities=18% Similarity=0.222 Sum_probs=147.0
Q ss_pred CCCccccccc-CChHh--HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 326 GDTITFADVA-GVDEA--KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 326 ~~~vtf~DV~-G~dev--K~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
.+..||++.+ |.... ...++++. +.+. ........+++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a---~~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFT---KVSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHH---hccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4667899887 43322 12222322 1110 0111233579999999999999999999875 6889999998
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
+|...+.......-.+.|.... ..+.+|+|||++.+..+.. ...+.-.++|.+.. ....+|+++++
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~------~qeelf~l~N~l~~-------~~k~IIlts~~ 244 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA------TQEEFFHTFNSLHT-------EGKLIVISSTC 244 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh------hHHHHHHHHHHHHH-------CCCcEEEecCC
Confidence 8876544322111122344333 3456999999999854321 12233334444432 12345555555
Q ss_pred CCC---CCCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 480 RSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 480 ~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
.|. .+++.|.+ ||. ..+.+.+|+.++|.+||+..+...++.+++++ ++.|+....+ +.++|.+.++..+..
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 453 56788888 884 78899999999999999999988777666653 6667777765 788898888887532
Q ss_pred -HHh-hCCccccHHHHHHHHHHHhc
Q 004770 555 -AGR-LNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 555 -A~r-~~~~~It~~d~~~Alervi~ 577 (731)
|.. -....|+.+++.+++...+.
T Consensus 321 ~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 321 VAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 221 12356899999999977543
No 100
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.58 E-value=3e-14 Score=172.39 Aligned_cols=205 Identities=22% Similarity=0.333 Sum_probs=146.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~i 396 (731)
..-.++.++|.++..+++.+++ . .+...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l---~---------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVL---S---------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHH---h---------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 4457889999999655555443 2 2334578999999999999999999975 6788999
Q ss_pred echhhH--HHhhccchHHHHHHHHHHHh-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 004770 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (731)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (731)
+.+.++ ..|.|..+.+++.+|+.+.. ..|+||||||||.|.+.+... +.. ...+.|...+ .+..+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~----d~~~~Lk~~l----~~g~i~ 304 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAM----DAGNMLKPAL----ARGELH 304 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chh----HHHHHhchhh----hcCceE
Confidence 888876 46888899999999998865 458999999999997543211 111 1223333222 356799
Q ss_pred EEEEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCc---ccCCHHHHHHhCCCC-----C
Q 004770 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA---KDIDLGDIASMTTGF-----T 540 (731)
Q Consensus 474 VIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~---~dvdl~~LA~~t~G~-----S 540 (731)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++.+||+.+..+...... .+..+...+..+..| -
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~l 381 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFL 381 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCC
Confidence 999998764 47999999 997 5899999999999999987655322111 112344555555554 3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004770 541 GADLANLVNEAALLAGR 557 (731)
Q Consensus 541 gadL~~Lv~eAa~~A~r 557 (731)
|.....++++|+..+..
T Consensus 382 PdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 382 PDKAIDLIDEAAARIRM 398 (852)
T ss_pred chHHHHHHHHHHHHHHh
Confidence 56777888888766543
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.2e-14 Score=163.61 Aligned_cols=211 Identities=20% Similarity=0.217 Sum_probs=148.8
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe-
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC- 396 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp-------fi~i- 396 (731)
...+-+|+||+|++++++.|+..+.. .+.|..+||+||+|||||++|+++|+.+++. +-.|
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 34567899999999999998887742 3566678999999999999999999988752 1111
Q ss_pred echhhH----------HH--hhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHH
Q 004770 397 SASEFV----------EL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (731)
Q Consensus 397 s~se~~----------~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (731)
+|-.+. +. -...+...++++.+.+.. ....|++|||+|.|.. ...|.||
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALL 139 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALL 139 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHH
Confidence 111110 00 001134556666555432 2345999999999842 2568889
Q ss_pred HhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCC
Q 004770 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (731)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (731)
..|+. ....+++|.+|+.++.|.+++++ | ..++.|..++.++..+.++..+.+.++.++++ .+..+++.+.| +
T Consensus 140 K~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~G-d 212 (584)
T PRK14952 140 KIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGGG-S 212 (584)
T ss_pred HHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 98884 33567888888888999999987 5 45899999999999999999998777665443 46667777765 8
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 004770 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (731)
Q Consensus 541 gadL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (731)
.+++.++++.++..+ +...|+.+++.+.
T Consensus 213 lR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 213 PRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 888989988875443 2345776666554
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.5e-14 Score=164.96 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=149.5
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------------
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------- 392 (731)
..+-+|+||+|++++++.|...+.. .+.+..+||+||+|+|||++|+++|+.++++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 3567899999999999999887642 3567779999999999999999999998653
Q ss_pred -----------EEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHH
Q 004770 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (731)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (731)
++.+++.. ..+...++++.+.+... ...|++|||+|.|.. ...|
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~n 137 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFN 137 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHH
Confidence 22222111 12345677777666432 235999999998852 2458
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
.||..|+. +...+++|.+|+.++.|.+.+++ |. ..+.|..++.++....++..+.+.++.++++ .+..+++.+.
T Consensus 138 aLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~-al~~la~~a~ 211 (576)
T PRK14965 138 ALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA-ALALVARKGD 211 (576)
T ss_pred HHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcC
Confidence 88998884 33567888888889999999987 53 3788999999999999998888877766554 4777888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (731)
| +.+++.++++.+..... ..|+.+++...
T Consensus 212 G-~lr~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 212 G-SMRDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred C-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 7 77888888877655432 24676665543
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.6e-14 Score=155.19 Aligned_cols=213 Identities=19% Similarity=0.262 Sum_probs=146.8
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh--
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-- 401 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~-- 401 (731)
+...+.+|+|++|++.+++.+...+.. .+.|.++|||||||+|||++|+++|+.+.++.....+.++
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 344678899999999999888776642 2457789999999999999999999987653211111000
Q ss_pred ----HHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 004770 402 ----VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (731)
Q Consensus 402 ----~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (731)
.+.....+...++++++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ....+
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~~ 140 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHAI 140 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCceE
Confidence 000111233567777776643 2346999999997742 2356777777642 23456
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 004770 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (731)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~ 553 (731)
+|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.++.++++ .++.++..+.| +.+.+.+.++....
T Consensus 141 ~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~~ 215 (367)
T PRK14970 141 FILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVVT 215 (367)
T ss_pred EEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 66667778889999887 43 3689999999999999999888877766554 57778887765 77777777776665
Q ss_pred HHHhhCCccccHHHHHHHHH
Q 004770 554 LAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 554 ~A~r~~~~~It~~d~~~Ale 573 (731)
.+. .. |+.+++.+.+.
T Consensus 216 y~~---~~-it~~~v~~~~~ 231 (367)
T PRK14970 216 FCG---KN-ITRQAVTENLN 231 (367)
T ss_pred hcC---CC-CCHHHHHHHhC
Confidence 542 22 77777666543
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.2e-14 Score=169.15 Aligned_cols=210 Identities=21% Similarity=0.185 Sum_probs=146.4
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE-----Eeech
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCSAS 399 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi-----~is~s 399 (731)
.....+|+||+|++++++.|+..+.. .+.+..+||+||+|||||++|+.||+.++|.-- .-.|.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 34567899999999999998887652 345667999999999999999999999875210 00111
Q ss_pred hhHHHhhc---------------cchHHHHHHHHHHH----hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHH
Q 004770 400 EFVELYVG---------------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (731)
Q Consensus 400 e~~~~~vG---------------~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (731)
.+.....| .+...+|++-+.+. .....|+||||+|.|.. ...|.||
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLL 141 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALL 141 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHH
Confidence 11111000 12345566544432 23456999999999852 3468888
Q ss_pred HhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCC
Q 004770 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (731)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (731)
+.|+... ..+++|.+|+.++.|.+.|++ | ..++.|..++.++..++|+..+.+.++.++++ .+..|++...| +
T Consensus 142 K~LEEpP--~~~~fIl~tt~~~kLl~TIrS--R-c~~v~F~~l~~~~l~~~L~~il~~EGv~id~e-al~lLa~~sgG-d 214 (824)
T PRK07764 142 KIVEEPP--EHLKFIFATTEPDKVIGTIRS--R-THHYPFRLVPPEVMRGYLERICAQEGVPVEPG-VLPLVIRAGGG-S 214 (824)
T ss_pred HHHhCCC--CCeEEEEEeCChhhhhHHHHh--h-eeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 8888543 466777778888889889887 5 34899999999999999999998777665443 46667777766 7
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 004770 541 GADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (731)
Q Consensus 541 gadL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (731)
.+++.++++..+..+ +...|+.+++..
T Consensus 215 lR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 215 VRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred HHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 888888888765332 234466665543
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=1.5e-14 Score=174.49 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=149.2
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEee
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is 397 (731)
.-.+++++|.++..+++.+++. .+.+.+++|+||||||||++|+++|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4468899999998887777653 3455689999999999999999999976 47899999
Q ss_pred chhhH--HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEE
Q 004770 398 ASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (731)
Q Consensus 398 ~se~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVI 475 (731)
++.++ ..|.|+.+.+++.+|+.+....++||||||||.|.+..... +..+ .-+-|...+. +..+.+|
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~----~a~lLkp~l~----rg~l~~I 311 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAID----AANILKPALA----RGELQCI 311 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Cccc----HHHHhHHHHh----CCCcEEE
Confidence 98887 36888899999999999988889999999999998654321 1111 1122233332 4668999
Q ss_pred EEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc----CCCCCcccCCHHHHHHhCCCCC-----H
Q 004770 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----G 541 (731)
Q Consensus 476 aATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~t~G~S-----g 541 (731)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... .++.+.++ .+..++..+.+|. |
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~de-al~~i~~ls~~yi~~r~lP 387 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDK-ALEAAAKLSDQYIADRFLP 387 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCccccCc
Confidence 9998764 47999999 997 5789999999999998765432 22333333 3566666666553 4
Q ss_pred HHHHHHHHHHHHHHHh
Q 004770 542 ADLANLVNEAALLAGR 557 (731)
Q Consensus 542 adL~~Lv~eAa~~A~r 557 (731)
.....++++|+.....
T Consensus 388 dkaidlld~a~a~~~~ 403 (821)
T CHL00095 388 DKAIDLLDEAGSRVRL 403 (821)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 5667788887765543
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=9e-14 Score=162.93 Aligned_cols=212 Identities=21% Similarity=0.289 Sum_probs=152.9
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE---eechh
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS---CSASE 400 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~---is~se 400 (731)
...++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.++--. -.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 344677899999999999998887752 2456779999999999999999999988664210 11222
Q ss_pred hHHH-------hh-----ccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc
Q 004770 401 FVEL-------YV-----GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (731)
Q Consensus 401 ~~~~-------~v-----G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 464 (731)
+... +. ..+...+|++.+.+.. ....|++|||+|.|.. ...+.||..|+
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLE 143 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLE 143 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhh
Confidence 1110 00 1234557888777654 2346999999998842 25688899888
Q ss_pred CCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHH
Q 004770 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (731)
Q Consensus 465 g~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL 544 (731)
. +...+++|.+|+.++.|.+++++ |. .++.|.+|+.++..++|+..+.+.++.+.++ .+..++..+.| +.+++
T Consensus 144 E--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~A 216 (725)
T PRK07133 144 E--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRDA 216 (725)
T ss_pred c--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 4 34567788888889999999988 65 3899999999999999998887766655443 36778888876 78888
Q ss_pred HHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 545 ANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 545 ~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
.++++.+.... ...|+.+++.+.+
T Consensus 217 lslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 217 LSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 88888765442 2337877776654
No 107
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=4.5e-14 Score=156.82 Aligned_cols=185 Identities=20% Similarity=0.281 Sum_probs=128.7
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----------------
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------------- 393 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf---------------- 393 (731)
.|++|+|++++++.|++.+..-+.. +...+.+.|.++||+||||+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 5899999999999999999764432 3334566789999999999999999999999875531
Q ss_pred -------EEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh
Q 004770 394 -------ISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (731)
Q Consensus 394 -------i~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (731)
..+.... ...+...+|++++.+.. ....|+||||+|.+... ..|.||..
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~ 140 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKA 140 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHH
Confidence 1111100 11234568888887764 23469999999998532 34778888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHH
Q 004770 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (731)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (731)
|+... .++++|.+|+.++.|.|++++ |. ..+.|++|+.++..++|.... ++ .+ .....++..+.|..+.
T Consensus 141 LEep~--~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~--~~-~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 141 VEEPP--PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV--DP-ETARRAARASQGHIGR 209 (394)
T ss_pred hhcCC--CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC--CH-HHHHHHHHHcCCCHHH
Confidence 87433 334455555558999999998 54 589999999998887776322 22 22 2356778888886665
Q ss_pred HHHHH
Q 004770 543 DLANL 547 (731)
Q Consensus 543 dL~~L 547 (731)
.+.-+
T Consensus 210 A~~l~ 214 (394)
T PRK07940 210 ARRLA 214 (394)
T ss_pred HHHHh
Confidence 55443
No 108
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=7.3e-14 Score=160.90 Aligned_cols=211 Identities=17% Similarity=0.219 Sum_probs=148.0
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-----EEeec
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-----ISCSA 398 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf-----i~is~ 398 (731)
+..++.+|+|++|++.+++.|...+. ..+.|+.+||+||||+|||++|+++|+.+.+.- ..-.|
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 33456789999999999998887653 235567899999999999999999999875410 00011
Q ss_pred hhhHH-------------HhhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHH
Q 004770 399 SEFVE-------------LYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (731)
Q Consensus 399 se~~~-------------~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (731)
..+.. .....+...+|++.+.+... ...|++|||+|.|.. ...+.||.
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLK 141 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLK 141 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHH
Confidence 11100 00012344577777665532 235999999998842 23478888
Q ss_pred hhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCH
Q 004770 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (731)
Q Consensus 462 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (731)
.|+. +...+++|.+|+.++.|.+++++ |.. .+.+..|+.++....++..+.+.+..++++ .+..++..+.| +.
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~e-al~~La~lS~G-dl 214 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDN-AIDKIADLADG-SL 214 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-cH
Confidence 8874 33467788888889999999988 543 789999999999999999888776666554 36778888876 78
Q ss_pred HHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 004770 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (731)
Q Consensus 542 adL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (731)
+++.++++.+...+ +. .|+.+++.+.
T Consensus 215 R~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 215 RDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 88888888755443 22 2777776664
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.3e-13 Score=157.75 Aligned_cols=192 Identities=22% Similarity=0.277 Sum_probs=142.5
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------ 392 (731)
..++.+|+||+|++++++.|+..+.. .+.|..+|||||+|+|||++|+++|+.+.++
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34567899999999999999887742 3567778999999999999999999987431
Q ss_pred ------------EEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
++.++++. ..+...++++.+.+... ...|++|||+|.+.. ...
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~ 134 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAF 134 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHH
Confidence 22222111 01235677776654321 224999999998842 345
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhC
Q 004770 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (731)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (731)
|.||..|+... ..+.+|.+|+.+..|.+++++ | ..+++|.+++.++..+.++..+...++.+.++ .+..|++.+
T Consensus 135 NALLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--R-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s 208 (535)
T PRK08451 135 NALLKTLEEPP--SYVKFILATTDPLKLPATILS--R-TQHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSG 208 (535)
T ss_pred HHHHHHHhhcC--CceEEEEEECChhhCchHHHh--h-ceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 78898888543 456666677778999999988 6 35899999999999999999888877766544 577888888
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 004770 537 TGFTGADLANLVNEAALLA 555 (731)
Q Consensus 537 ~G~SgadL~~Lv~eAa~~A 555 (731)
.| +.+++.++++.+...+
T Consensus 209 ~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred CC-cHHHHHHHHHHHHHhc
Confidence 77 8899999998877654
No 110
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.56 E-value=1.2e-13 Score=161.51 Aligned_cols=220 Identities=17% Similarity=0.150 Sum_probs=143.5
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeechh
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASE 400 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is~se 400 (731)
-+.|.|.++..++|..++..... +..++..++|+|+||||||++++.+.+++ .+.+++++|..
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 36788888877777776654221 22233345699999999999999998765 25678999854
Q ss_pred hHHHh----------hc-------cchHHHHHHHHHHH--hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHH
Q 004770 401 FVELY----------VG-------MGASRVRDLFARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (731)
Q Consensus 401 ~~~~~----------vG-------~~~~~vr~lF~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (731)
+...+ .+ .....+..+|.... ....+||+|||||.|.... ..+|..|+.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR 894 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFD 894 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHH
Confidence 33211 01 11234556666542 2345799999999996431 244566665
Q ss_pred hhcCCCCCCcEEEEEEcCC---CCCCCccccCCCccce-EEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 462 EMDGFDSNSAVIVLGATNR---SDVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 462 emdg~~~~~~VIVIaATN~---pd~LDpALlRpGRFdr-~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
... .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+......+.++ .++.+|+...
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDd-AIELIArkVA 969 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHT-AIQLCARKVA 969 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHhhh
Confidence 533 23467999999986 5677888887 5432 478899999999999999987532223333 3666666444
Q ss_pred CC--CHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhc
Q 004770 538 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 538 G~--SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~ 577 (731)
.. ..+..-++|+.|+.. .+...|+.+|+.+|++++..
T Consensus 970 q~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 970 NVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred hcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 32 334455666666654 34458999999999977643
No 111
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.3e-13 Score=159.55 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=150.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe-e
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-S 397 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp-------fi~i-s 397 (731)
..+.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.++++ +-.| +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 4567899999999999998887742 3466789999999999999999999998652 2111 1
Q ss_pred chhhHHH-------hhc---cchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh
Q 004770 398 ASEFVEL-------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (731)
Q Consensus 398 ~se~~~~-------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (731)
|-.+... +-| .+...++++.+.+.. ....|++|||+|.+.. ..+|.||..+
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~L 143 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKTI 143 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHhh
Confidence 1111000 011 223456666554432 3456999999998842 3568888888
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHH
Q 004770 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (731)
Q Consensus 464 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sgad 543 (731)
+. +...+++|.+|+.++.|.+++++ |+. .+.+.+++.++..++++..+...+++++++ .+..|++...| +.++
T Consensus 144 Ee--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dlR~ 216 (563)
T PRK06647 144 EE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SVRD 216 (563)
T ss_pred cc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 84 34567777888888899999987 644 789999999999999999888777766554 47778888776 7888
Q ss_pred HHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 544 LANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 544 L~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
+.++++.+...+ ...|+.+++.+++
T Consensus 217 alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 217 AYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 888888776543 2347777766654
No 112
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.6e-13 Score=156.29 Aligned_cols=211 Identities=21% Similarity=0.279 Sum_probs=146.9
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEe-
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC- 396 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-------pfi~i- 396 (731)
..++.+|+|++|++.+++.|+..+.. .+.+..+||+||||+|||++|+.+|..+++ |+-.|
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 34567899999999999988887642 245667899999999999999999998764 11111
Q ss_pred echhhHH-----Hh-----hccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh
Q 004770 397 SASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (731)
Q Consensus 397 s~se~~~-----~~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (731)
+|..+.. .+ ...+...++.+.+.+.. ..+.|++|||+|.+.. ..++.|+..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~ 142 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKT 142 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHH
Confidence 1111100 00 11233446666555543 2356999999998742 235778888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHH
Q 004770 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (731)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (731)
++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...+++.++...++.++++ .++.++..+.| +.+
T Consensus 143 LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~-al~~La~~s~G-~lr 215 (486)
T PRK14953 143 LEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK-ALDLLAQASEG-GMR 215 (486)
T ss_pred HhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 8743 3345666667778888888887 543 789999999999999999998877665444 46778888776 788
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 543 dL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
++.++++.+...+ ...|+.+++.+++
T Consensus 216 ~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 216 DAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 8888888776442 3457877777654
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.5e-13 Score=159.58 Aligned_cols=213 Identities=18% Similarity=0.201 Sum_probs=153.9
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe-------
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC------- 396 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i------- 396 (731)
....+.+|+||+|++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+++.....
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 344667999999999999998887642 35677899999999999999999999987642111
Q ss_pred ------echhhHH--------Hh--hccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 397 ------SASEFVE--------LY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 397 ------s~se~~~--------~~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
+|..+.+ .- ...+...+|++.+.+... ...|++|||+|.|.. ...
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~ 149 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAF 149 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHH
Confidence 1111111 00 012345678887776532 346999999998842 346
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhC
Q 004770 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (731)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t 536 (731)
|.||..|+... ..+++|.+|+.++.+.+.+++ |. ..+.|..|+.++...+++..+.+.+..++++ .++.|++.+
T Consensus 150 naLLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~a 223 (598)
T PRK09111 150 NALLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARAA 223 (598)
T ss_pred HHHHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 88888888433 456666677778888888887 54 4799999999999999999998877666544 467778888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 004770 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 537 ~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Ale 573 (731)
.| +.+++.++++.+.... ...|+.+++.+.+.
T Consensus 224 ~G-dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 224 EG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred CC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 76 7889988888765442 34688888876653
No 114
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.55 E-value=9.1e-14 Score=155.17 Aligned_cols=182 Identities=29% Similarity=0.345 Sum_probs=117.4
Q ss_pred ccc-cccCChHhHHHHHHHHHH-hcChhHHhh---hCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-
Q 004770 330 TFA-DVAGVDEAKEELEEIVEF-LRSPDKYIR---LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE- 403 (731)
Q Consensus 330 tf~-DV~G~devK~~L~eiV~~-Lk~p~~~~~---lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~- 403 (731)
.++ .|+|++++|+.|...+.. ++.-..... -......++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 344 389999999999766532 111100000 01123468999999999999999999999999999999988764
Q ss_pred HhhccchHH-HHHHHHHH----HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-----------
Q 004770 404 LYVGMGASR-VRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------- 467 (731)
Q Consensus 404 ~~vG~~~~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------- 467 (731)
.|+|..... +..++..+ ....++||||||||.+........ ...+-..+.+.+.||..|++-.
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~-~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC-cCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 577765444 34444332 234678999999999987632210 0011111345677777777531
Q ss_pred CCCcEEEEEEcCCCC----------------------------------------------------CCCccccCCCccc
Q 004770 468 SNSAVIVLGATNRSD----------------------------------------------------VLDPALRRPGRFD 495 (731)
Q Consensus 468 ~~~~VIVIaATN~pd----------------------------------------------------~LDpALlRpGRFd 495 (731)
+....++|.|+|-.. -+.|+++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 112345666655410 0234444 5999
Q ss_pred eEEEeeCCCHHHHHHHHHH
Q 004770 496 RVVMVETPDKIGREAILKV 514 (731)
Q Consensus 496 r~I~v~~Pd~~eR~eILk~ 514 (731)
.++.+.+.+.++..+|+..
T Consensus 305 ~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 305 VVATLEELDEEALVRILTE 323 (412)
T ss_pred eeeecCCCCHHHHHHHHHH
Confidence 9999999999999999873
No 115
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.7e-14 Score=155.01 Aligned_cols=216 Identities=15% Similarity=0.185 Sum_probs=148.2
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE---------
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI--------- 394 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi--------- 394 (731)
+...+.+|+||+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+++.+.-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 44567789999999999998887664 2356778999999999999999999999876310
Q ss_pred -Eeechh------hHH-------Hhhc---cchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHH
Q 004770 395 -SCSASE------FVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (731)
Q Consensus 395 -~is~se------~~~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (731)
.-.|.. +.. .+.+ .+...++++.+.+.. ....|+||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 011111 100 0111 123556666555532 2235999999998842
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHH
Q 004770 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (731)
Q Consensus 454 ~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA 533 (731)
...+.|+..++... ...++|.+|+.+..+-+++.+ |.. .+++.+++.++..+.++..+...+..++++ .++.|+
T Consensus 142 ~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l~ 215 (397)
T PRK14955 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLIG 215 (397)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 23467777777332 345555566677888888876 543 788999999999999998887766555544 467778
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHh-hCCccccHHHHHHHH
Q 004770 534 SMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (731)
Q Consensus 534 ~~t~G~SgadL~~Lv~eAa~~A~r-~~~~~It~~d~~~Al 572 (731)
..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 88866 788888888877666532 234578888877665
No 116
>PRK08727 hypothetical protein; Validated
Probab=99.54 E-value=2.5e-13 Score=140.78 Aligned_cols=208 Identities=19% Similarity=0.220 Sum_probs=135.6
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
+..+|++.++-++- .+..+..... ......++|+||+|||||+|++|++.++ +...++++..++..
T Consensus 14 ~~~~f~~f~~~~~n--~~~~~~~~~~---------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 14 SDQRFDSYIAAPDG--LLAQLQALAA---------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred CcCChhhccCCcHH--HHHHHHHHHh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 45689888765542 2221111111 1223459999999999999999997764 66777777666443
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc-CCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-NRSD 482 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT-N~pd 482 (731)
. +.+.++... ...+|+|||+|.+.... .....+..++..+. . .+.-||.|+ +.|.
T Consensus 83 ~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~----------~~~~~lf~l~n~~~---~-~~~~vI~ts~~~p~ 138 (233)
T PRK08727 83 R--------LRDALEALE--GRSLVALDGLESIAGQR----------EDEVALFDFHNRAR---A-AGITLLYTARQMPD 138 (233)
T ss_pred h--------HHHHHHHHh--cCCEEEEeCcccccCCh----------HHHHHHHHHHHHHH---H-cCCeEEEECCCChh
Confidence 2 223343332 34599999999875332 11233444555442 1 123344444 4555
Q ss_pred CC---CccccCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 004770 483 VL---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (731)
Q Consensus 483 ~L---DpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r 557 (731)
.+ +++|.+ || ...+.+++|+.+++.+|++.++..+++.++++ .++.|++++.| +.+.+.++++.....+..
T Consensus 139 ~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e-~~~~La~~~~r-d~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 139 GLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEA-AIDWLLTHGER-ELAGLVALLDRLDRESLA 214 (233)
T ss_pred hhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 44 788988 76 56889999999999999999887777776655 47888888876 677777778766554544
Q ss_pred hCCccccHHHHHHHHHH
Q 004770 558 LNKVVVEKIDFIHAVER 574 (731)
Q Consensus 558 ~~~~~It~~d~~~Aler 574 (731)
.+ ..||...+.+.+.+
T Consensus 215 ~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 215 AK-RRVTVPFLRRVLEE 230 (233)
T ss_pred hC-CCCCHHHHHHHHhh
Confidence 43 46888888877743
No 117
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.6e-13 Score=153.39 Aligned_cols=206 Identities=20% Similarity=0.254 Sum_probs=144.6
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp----------- 392 (731)
+...+.+|+||+|++.+++.|...+.. .+.|..+||+||||+|||++|+++|+.+.++
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 334567999999999999988887642 3467789999999999999999999987542
Q ss_pred --------------EEEeechhhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcccchhhcccCCcccccchHHHHH
Q 004770 393 --------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (731)
Q Consensus 393 --------------fi~is~se~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (731)
++.+++.. ..+...++++.+... .....||+|||+|.+.. .
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~ 136 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------E 136 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------H
Confidence 22222110 012234554433332 23467999999998842 2
Q ss_pred HHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHH
Q 004770 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (731)
Q Consensus 455 ~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~ 534 (731)
..+.|+..|+.. ...+++|.+||.+..|.+++++ |. ..+++..++.++..++++..+.+.++.++++ .++.|+.
T Consensus 137 ~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~ 210 (451)
T PRK06305 137 AFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIAR 210 (451)
T ss_pred HHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 357888888853 3466777777888899999987 54 3789999999999999998887766655444 4777888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 535 ~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
.+.| +.+++.++++...... + ..|+.+++.+++
T Consensus 211 ~s~g-dlr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 211 AAQG-SLRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 8766 6677777766654332 2 348887776655
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=1.8e-13 Score=154.71 Aligned_cols=192 Identities=14% Similarity=0.218 Sum_probs=132.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhHHHhhccchH---HHHHHHHHHHhcCCeEEEEcccchh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAV 436 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se~~~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL 436 (731)
..+++|||++|+|||+|++|+++++ +..++++++.+|...+...... .+.+ |..-. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEeccccc
Confidence 3569999999999999999999854 5788999999988776543221 2222 22111 24569999999988
Q ss_pred hcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC---CCCccccCCCcc--ceEEEeeCCCHHHHHHH
Q 004770 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRF--DRVVMVETPDKIGREAI 511 (731)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd---~LDpALlRpGRF--dr~I~v~~Pd~~eR~eI 511 (731)
..+. .....+-.+++.+. ...+.+|+++...|. .+++.|.+ || ...+.+.+|+.++|.+|
T Consensus 219 ~~k~----------~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SYKE----------KTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cCCH----------HHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 5321 11223333333332 122334444444443 45788887 77 46788999999999999
Q ss_pred HHHHHhcCCC--CCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC-CccccHHHHHHHHHHH
Q 004770 512 LKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-KVVVEKIDFIHAVERS 575 (731)
Q Consensus 512 Lk~~l~~~~l--~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~-~~~It~~d~~~Alerv 575 (731)
|+..+...++ .++++ .++.|+....| +.+.|..+++.+...+.... ...|+.+.+.+++...
T Consensus 284 L~~~~~~~gl~~~l~~e-vl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEE-AINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcCCCCCCCHH-HHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999987654 34444 36778888887 89999999999886665542 3679999999988764
No 119
>PRK05642 DNA replication initiation factor; Validated
Probab=99.53 E-value=3.2e-13 Score=140.14 Aligned_cols=180 Identities=16% Similarity=0.218 Sum_probs=126.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccC
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (731)
...++|+||+|+|||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 4679999999999999999998764 6788889988876531 122222222 2489999999875332
Q ss_pred CcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC---CCccccCCCcc--ceEEEeeCCCHHHHHHHHHHHH
Q 004770 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHV 516 (731)
Q Consensus 442 ~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~---LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l 516 (731)
.....+-.+++.+ ..+.+.+|++++..|.. +.|.|.+ || ...+.+..|+.+++.++++..+
T Consensus 114 ---------~~~~~Lf~l~n~~---~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 114 ---------DWEEALFHLFNRL---RDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ---------HHHHHHHHHHHHH---HhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 1123344444433 23345677777666643 3688887 76 4678889999999999999777
Q ss_pred hcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 517 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 517 ~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
...++.+++++ ++.|+++..+ +.+.+.++++.-...+.. .+..||..-+.+++
T Consensus 180 ~~~~~~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDEV-GHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 76667666653 7788888877 899999999887654433 34668887777765
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.53 E-value=1.7e-13 Score=140.91 Aligned_cols=204 Identities=21% Similarity=0.308 Sum_probs=125.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhh
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se~ 401 (731)
++.||++.+--+.-+..+.-+-....++ ......++||||+|+|||+|.+|+++++ +..++++++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~-------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP-------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST-------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC-------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 5678999863332222222221112222 1123459999999999999999999874 678999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
...+.......-..-|..... ...+|+||++|.+..+ ......+-.+++.+. .+.+-+|+++...|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~~~---~~~k~li~ts~~~P 141 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK----------QRTQEELFHLFNRLI---ESGKQLILTSDRPP 141 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH----------HHHHHHHHHHHHHHH---HTTSEEEEEESS-T
T ss_pred HHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc----------hHHHHHHHHHHHHHH---hhCCeEEEEeCCCC
Confidence 877654322221222333223 3449999999998633 122333444444432 23445666666666
Q ss_pred CC---CCccccCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 482 DV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 482 d~---LDpALlRpGRF--dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
.. +++.|.+ || ...+.+..|+.++|.+|++..+...++.+++++ ++.|++...+ +.++|..+++.-...+
T Consensus 142 ~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 142 SELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred ccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 54 4677776 66 458999999999999999999999988887775 6778888765 8899999888766554
No 121
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=6.2e-14 Score=147.53 Aligned_cols=195 Identities=22% Similarity=0.230 Sum_probs=139.7
Q ss_pred ccccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------EEE
Q 004770 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FIS 395 (731)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------fi~ 395 (731)
..+...+-+|+|++|++++++.|...+.. +.-.++|||||||||||+.|+++|.+++.| +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 34566788999999999999999887643 233469999999999999999999998762 222
Q ss_pred eechhhHHHhhccchHHHHHHHHHHHhc------CC----eEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC
Q 004770 396 CSASEFVELYVGMGASRVRDLFARAKKE------AP----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (731)
Q Consensus 396 is~se~~~~~vG~~~~~vr~lF~~A~~~------aP----~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 465 (731)
.+.++....- ....++. -|.+.... .| .||+|||.|.+... .-+.|...|+.
T Consensus 94 lnaSderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd---------------aq~aLrr~mE~ 155 (346)
T KOG0989|consen 94 LNASDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD---------------AQAALRRTMED 155 (346)
T ss_pred hccccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH---------------HHHHHHHHHhc
Confidence 2333332211 1111111 23333221 12 49999999999643 33678888887
Q ss_pred CCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHH
Q 004770 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (731)
Q Consensus 466 ~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~ 545 (731)
+.. .+.+|..||.++.|+..+.+ |-. .+.|+....+.....|+..+.+++++++++ .++.|+..+.| +-++..
T Consensus 156 ~s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~-al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 156 FSR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDD-ALKLIAKISDG-DLRRAI 228 (346)
T ss_pred ccc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-cHHHHH
Confidence 554 46778889999999999987 543 678888888888889999999988888766 47888888877 667777
Q ss_pred HHHHHHHH
Q 004770 546 NLVNEAAL 553 (731)
Q Consensus 546 ~Lv~eAa~ 553 (731)
.+++.++.
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 77776655
No 122
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.1e-13 Score=156.92 Aligned_cols=196 Identities=22% Similarity=0.306 Sum_probs=153.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEee-c
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS-A 398 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp-------fi~is-~ 398 (731)
++.+|+|++|++.+.+.|...+..-+ ...+.||.||.|||||++||.+|+.+++. +..|. |
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 45689999999999999999886533 44569999999999999999999988764 22221 1
Q ss_pred --------hhhHH--HhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc
Q 004770 399 --------SEFVE--LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (731)
Q Consensus 399 --------se~~~--~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 464 (731)
.++++ .-...+...+|++.+.+.- ....|++|||+|.|. .+.+|.||..++
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTLE 144 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTLE 144 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcccc
Confidence 11111 1123356778888887753 345699999999985 356799999998
Q ss_pred CCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHH
Q 004770 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (731)
Q Consensus 465 g~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL 544 (731)
++...|++|.||..++.+++.+++ | ..++.+..-+.++....|+..+.++++..+++ .+..+|+...| |.+|.
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlS--R-cq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~RDa 217 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILS--R-CQRFDFKRLDLEEIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLRDA 217 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhh--c-cccccccCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHcCC-ChhhH
Confidence 556789999999999999999988 4 23677999999999999999999888876655 48888999988 89999
Q ss_pred HHHHHHHHHHH
Q 004770 545 ANLVNEAALLA 555 (731)
Q Consensus 545 ~~Lv~eAa~~A 555 (731)
..+++.|....
T Consensus 218 lslLDq~i~~~ 228 (515)
T COG2812 218 LSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHcc
Confidence 99999887664
No 123
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.53 E-value=2.6e-13 Score=145.04 Aligned_cols=128 Identities=23% Similarity=0.299 Sum_probs=95.7
Q ss_pred CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC------------CCCCCccccCCC
Q 004770 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR------------SDVLDPALRRPG 492 (731)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~------------pd~LDpALlRpG 492 (731)
|.||||||+|.|- -|.-..||.-+.. .+.+ +||.|||+ |.-|+..|+.
T Consensus 292 pGVLFIDEvHmLD------------IE~FsFlnrAlEs--e~aP----Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD-- 351 (450)
T COG1224 292 PGVLFIDEVHMLD------------IECFSFLNRALES--ELAP----IIILATNRGMTKIRGTDIESPHGIPLDLLD-- 351 (450)
T ss_pred cceEEEechhhhh------------HHHHHHHHHHhhc--ccCc----EEEEEcCCceeeecccCCcCCCCCCHhhhh--
Confidence 6678888877652 1222233332221 1222 67778886 6678888875
Q ss_pred ccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
|+ .+|...+.+.++.++|++..+...++.++++ .++.|+.....-|-+...+|+.-|...|.++++..|..+|+++|.
T Consensus 352 Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~-Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 352 RL-LIISTRPYSREEIREIIRIRAKEEDIELSDD-ALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred he-eEEecCCCCHHHHHHHHHHhhhhhccccCHH-HHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 53 3667778899999999999998888877666 588888888888889999999999999999999999999999987
Q ss_pred HH
Q 004770 573 ER 574 (731)
Q Consensus 573 er 574 (731)
+-
T Consensus 430 ~l 431 (450)
T COG1224 430 EL 431 (450)
T ss_pred HH
Confidence 54
No 124
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.53 E-value=6.1e-13 Score=142.27 Aligned_cols=204 Identities=23% Similarity=0.255 Sum_probs=137.8
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeech
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS 399 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-----vpfi~is~s 399 (731)
...+.+|+|++|.+++++.|...+.. .. ..++||+||||||||++++++++++. .+++.++++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE-----------KN-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC-----------CC-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 34557899999999999988877631 11 22589999999999999999999873 345555544
Q ss_pred hhHHHhhccchHHHHHHHHHHHh------cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 004770 400 EFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (731)
+-. ....+++.+..... ..+.+|+|||+|.+... ..+.|+..++....+ ..
T Consensus 78 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~~~--~~ 134 (319)
T PRK00440 78 DER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYSQN--TR 134 (319)
T ss_pred ccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCCCC--Ce
Confidence 321 11122222222211 23569999999987421 123455555544432 45
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 004770 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (731)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~ 553 (731)
+|.++|.+..+.+++.+ |+. .+.+++|+.++...+++.++.+.++.+.++ .++.++..+.| +.+.+.+.++.++.
T Consensus 135 lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~~~ 209 (319)
T PRK00440 135 FILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAAAA 209 (319)
T ss_pred EEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 55567777777777877 654 689999999999999999998877766555 57888888765 56666666665443
Q ss_pred HHHhhCCccccHHHHHHHHH
Q 004770 554 LAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 554 ~A~r~~~~~It~~d~~~Ale 573 (731)
. ...||.+++..++.
T Consensus 210 ~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 210 T-----GKEVTEEAVYKITG 224 (319)
T ss_pred c-----CCCCCHHHHHHHhC
Confidence 2 35789988887763
No 125
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.8e-13 Score=156.29 Aligned_cols=209 Identities=19% Similarity=0.223 Sum_probs=145.8
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE------e-
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS------C- 396 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~------i- 396 (731)
+..+..+|++++|++++++.|...+.. .+.+.++||+||||+|||++|+++|+.+++.... |
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 344567899999999999999887753 2345679999999999999999999998763110 0
Q ss_pred echhhH-------------HHhhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHHHH
Q 004770 397 SASEFV-------------ELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (731)
Q Consensus 397 s~se~~-------------~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 459 (731)
.|..+. +.....+...+|++.+.+... ...||+|||+|.|.. ...|.|
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naL 141 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNAL 141 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHH
Confidence 111100 011123456788888776532 235999999998842 345888
Q ss_pred HHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCC
Q 004770 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (731)
Q Consensus 460 L~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 539 (731)
|..|+. ....+++|.+|+.++.|.+.+++ |. ..+.|..++.++....++..+.+.++.+.++ .+..+++.+.|
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~-al~~La~~s~G- 214 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPE-ALTLVAQRSQG- 214 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-
Confidence 998884 33557777778888888889887 54 4788989999888888888777766655544 37778888876
Q ss_pred CHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 004770 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (731)
Q Consensus 540 SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (731)
+.+++.++++...... ..|+.+++.+
T Consensus 215 ~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 215 GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 5677777777644331 2466555543
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.2e-13 Score=154.93 Aligned_cols=215 Identities=15% Similarity=0.208 Sum_probs=148.1
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE---------
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS--------- 395 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~--------- 395 (731)
..++.+|+||+|++.+++.|+..+. ..+.+..+||+||||||||++|+++|+.+++.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 3456789999999999999888654 23667789999999999999999999998763100
Q ss_pred -eechh---hHHH----------hhc---cchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHH
Q 004770 396 -CSASE---FVEL----------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (731)
Q Consensus 396 -is~se---~~~~----------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (731)
-.|.. +... +.+ .+...++++.+.+.. ....|++|||+|.+.. .
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~ 142 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------A 142 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------H
Confidence 01111 1100 111 124567776655532 2345999999998842 2
Q ss_pred HHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHH
Q 004770 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (731)
Q Consensus 455 ~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~ 534 (731)
..|.||..|+... ..+++|.+|+.++.|.+++++ | ...+.+..++.++....++..+...+..++++ .++.|+.
T Consensus 143 a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--R-c~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La~ 216 (620)
T PRK14954 143 AFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--R-CQRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIAR 216 (620)
T ss_pred HHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--h-ceEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 3578888888433 345555566677888888887 4 34899999999999988988887766655544 4777888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH-hhCCccccHHHHHHHH
Q 004770 535 MTTGFTGADLANLVNEAALLAG-RLNKVVVEKIDFIHAV 572 (731)
Q Consensus 535 ~t~G~SgadL~~Lv~eAa~~A~-r~~~~~It~~d~~~Al 572 (731)
.+.| +.+++.+.++.....+. ......|+.+++.+.+
T Consensus 217 ~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 8866 77777777776665552 1234568887776655
No 127
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.51 E-value=6e-13 Score=137.78 Aligned_cols=195 Identities=23% Similarity=0.355 Sum_probs=135.3
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~ 401 (731)
....+.+++++|+++.|+.|.+-...+.. ..+..++||+|++|||||+++||+..+. |+.+|.+.-.++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34679999999999999999876544332 4578899999999999999999999875 788999887766
Q ss_pred HHHhhccchHHHHHHHHHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC--CCCCcEEEEEEc
Q 004770 402 VELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 478 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~~~~VIVIaAT 478 (731)
. .+.++++..+ ...+-|||+|++- + . .+ +.....|-..|||- ....+|+|.||+
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLs-F--e--------~~---d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLS-F--E--------EG---DTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCC-C--C--------CC---cHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 3 3445555554 2346699999863 1 1 11 12235555556653 335789999999
Q ss_pred CCCCCCCcccc---------------------CCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc-CCHH--HHHH
Q 004770 479 NRSDVLDPALR---------------------RPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLG--DIAS 534 (731)
Q Consensus 479 N~pd~LDpALl---------------------RpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl~--~LA~ 534 (731)
|+-+.+++... =.-||...+.|..|+.++..+|++.++.+.+++++.+ ...+ ..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 98544432211 1248999999999999999999999998877765531 1111 1244
Q ss_pred hCCCCCHHHHHHHHHH
Q 004770 535 MTTGFTGADLANLVNE 550 (731)
Q Consensus 535 ~t~G~SgadL~~Lv~e 550 (731)
...|.||+-..+.++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5556677666665543
No 128
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.50 E-value=6.9e-13 Score=139.88 Aligned_cols=185 Identities=25% Similarity=0.258 Sum_probs=115.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh------hHHHhhccchHHHHHH--------------------HH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE------FVELYVGMGASRVRDL--------------------FA 418 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se------~~~~~vG~~~~~vr~l--------------------F~ 418 (731)
...+||+||||||||++|+++|..+|.|++.++|.. ++..+.+.....+.+- +-
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 346999999999999999999999999999997753 3333322211111111 11
Q ss_pred HHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC--------------CCCCcEEEEEEcCCC---
Q 004770 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--------------DSNSAVIVLGATNRS--- 481 (731)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--------------~~~~~VIVIaATN~p--- 481 (731)
.|.. ...+|+|||||.+... +.+.|+..|+.- ..+.++.||+|+|..
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~---------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE---------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH---------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 2222 2359999999986422 223344444321 122467899999976
Q ss_pred --CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHH---H---H---hCCCCCHHHHHHHHHH
Q 004770 482 --DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI---A---S---MTTGFTGADLANLVNE 550 (731)
Q Consensus 482 --d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~L---A---~---~t~G~SgadL~~Lv~e 550 (731)
..++++|++ || ..+.++.|+.++..+|++.+.. ++++ ..+.+ + + .....+ .+.++.-
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-----~~~~-~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~ 232 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-----VAED-SAATIVRLVREFRASGDEITSG---LRASLMI 232 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-----CCHH-HHHHHHHHHHHHHhhCCccCCc---HHHHHHH
Confidence 257899998 87 5889999999999999998752 1222 12222 1 1 011223 4444444
Q ss_pred HHHHHHhhCCccccHHHHHHHHHHHhc
Q 004770 551 AALLAGRLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 551 Aa~~A~r~~~~~It~~d~~~Alervi~ 577 (731)
|...+....+..++.+||.+....++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 233 AEVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 444444455778888999888877664
No 129
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=8.5e-13 Score=153.86 Aligned_cols=212 Identities=18% Similarity=0.230 Sum_probs=145.4
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE-----Eee-
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCS- 397 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi-----~is- 397 (731)
+.....+|+||+|++++++.|+..+.. .+.+..+||+||||+|||++|+++|+.+++..- .|.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 344677899999999999998887642 245667899999999999999999998764221 010
Q ss_pred chhhHHHh-------------hccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHH
Q 004770 398 ASEFVELY-------------VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (731)
Q Consensus 398 ~se~~~~~-------------vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (731)
|..+.... ...+...++++.+.+.. ....||||||+|.|.. ..++.||
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLL 141 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALL 141 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHH
Confidence 11110000 01223445665554432 2345999999998742 3467788
Q ss_pred HhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCC
Q 004770 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (731)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (731)
..|+... ..+++|.+++..+.+.+.+++ |. ..+.|..++..+...+++..+.+.++.++++ .+..|+..+.| +
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G-d 214 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG-S 214 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 8887543 345666667777778888876 54 3688999999999999998888777666554 46778888776 8
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 541 gadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
.+++.+.++..... ....|+.+++.+.+
T Consensus 215 lr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 215 MRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 88888888865443 23468887776544
No 130
>PRK06620 hypothetical protein; Validated
Probab=99.48 E-value=9.6e-13 Score=134.99 Aligned_cols=199 Identities=15% Similarity=0.217 Sum_probs=129.5
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCC-CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~-pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
.+..+|++++--+.-......+..+...+ +..+ -+.++||||||+|||+|++++++..+..++. .....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-- 79 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-- 79 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc--
Confidence 35668888776653322222222221111 1222 1679999999999999999999988764433 11110
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC-
Q 004770 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV- 483 (731)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~- 483 (731)
.+.+ ....+|+|||||.+. . ..+-.+++.+. .+.+.++|+++..|..
T Consensus 80 ---------~~~~-----~~~d~lliDdi~~~~-----------~----~~lf~l~N~~~---e~g~~ilits~~~p~~l 127 (214)
T PRK06620 80 ---------EEIL-----EKYNAFIIEDIENWQ-----------E----PALLHIFNIIN---EKQKYLLLTSSDKSRNF 127 (214)
T ss_pred ---------hhHH-----hcCCEEEEeccccch-----------H----HHHHHHHHHHH---hcCCEEEEEcCCCcccc
Confidence 1111 123589999999441 1 12334444432 2345677777766654
Q ss_pred -CCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCC
Q 004770 484 -LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (731)
Q Consensus 484 -LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~ 560 (731)
+ ++|++ |+. ..+.+..|+.+++.++++.++...++.+++++ ++.|+.+..+ +.+.+.++++.....+.. .+
T Consensus 128 ~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~-~~ 201 (214)
T PRK06620 128 TL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALI-SK 201 (214)
T ss_pred ch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHH-cC
Confidence 5 77877 764 47899999999999999999887777776664 7888888877 889999999886544443 34
Q ss_pred ccccHHHHHHHH
Q 004770 561 VVVEKIDFIHAV 572 (731)
Q Consensus 561 ~~It~~d~~~Al 572 (731)
..||...+.+++
T Consensus 202 ~~it~~~~~~~l 213 (214)
T PRK06620 202 RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHh
Confidence 568888877765
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.48 E-value=5.1e-12 Score=147.96 Aligned_cols=219 Identities=23% Similarity=0.304 Sum_probs=136.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEE
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~ 395 (731)
..+.+|++++|++++.+.+...+. ...+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999998887654331 1235679999999999999999998755 468999
Q ss_pred eechhhH-------HHhhccchHH----HHHHHHH----------HHhcCCeEEEEcccchhhcccCCcccccchHHHHH
Q 004770 396 CSASEFV-------ELYVGMGASR----VRDLFAR----------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (731)
Q Consensus 396 is~se~~-------~~~vG~~~~~----vr~lF~~----------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (731)
++|..+. ....+..... .+..++. .......+|||||++.|....+ .
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q------------~ 283 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ------------N 283 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH------------H
Confidence 9987641 1112211110 1111110 0012345999999998753321 1
Q ss_pred HHHHHHHhh-----------------------cCCCCCCcEEEEEE-cCCCCCCCccccCCCccceEEEeeCCCHHHHHH
Q 004770 455 TLNQLLTEM-----------------------DGFDSNSAVIVLGA-TNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (731)
Q Consensus 455 ~Ln~LL~em-----------------------dg~~~~~~VIVIaA-TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~e 510 (731)
.+..++..- ..-.....+++|++ |+.++.++++|++ ||. .+.+++++.++..+
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 122222210 00011234566655 4668889999987 876 67889999999999
Q ss_pred HHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh--------CCccccHHHHHHHHHH
Q 004770 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL--------NKVVVEKIDFIHAVER 574 (731)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~--------~~~~It~~d~~~Aler 574 (731)
|++..+.+.++.+.++ .++.|++.+. .++...+++..+...+..+ ....|+.+|+++++..
T Consensus 361 Il~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 361 IVLNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 9999988655555443 4566666654 4566656666554443211 2347899999988854
No 132
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=6.1e-13 Score=147.10 Aligned_cols=175 Identities=33% Similarity=0.447 Sum_probs=125.1
Q ss_pred cccCChHhHHHHHHHHHH-hcChhHHhh-hCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hhhc-c
Q 004770 333 DVAGVDEAKEELEEIVEF-LRSPDKYIR-LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~-Lk~p~~~~~-lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~-~~vG-~ 408 (731)
-|+|++++|+.+...+.. ++....... ..--.|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999998766542 111110000 11235789999999999999999999999999999999988775 5666 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 004770 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (731)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (731)
.+..++++|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566666665550
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 004770 422 ------------------------------------------------------------------------KEAPSIIF 429 (731)
Q Consensus 422 ------------------------------------------------------------------------~~aP~ILf 429 (731)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01335999
Q ss_pred EcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--------CCCcEEEEEEcC----CCCCCCccccCCCccceE
Q 004770 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRV 497 (731)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaATN----~pd~LDpALlRpGRFdr~ 497 (731)
|||||+++.+.... +.+-..+.+-+.||..|+|-. ...+|++||+.- .|+.|-|.|. |||..+
T Consensus 253 iDEiDKIa~~~~~~---~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGESS---GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIR 327 (441)
T ss_pred EEchhhhcccCCCC---CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 99999999765221 122223446678888888732 235688888763 4666778887 599999
Q ss_pred EEeeCCCHHHHHHHH
Q 004770 498 VMVETPDKIGREAIL 512 (731)
Q Consensus 498 I~v~~Pd~~eR~eIL 512 (731)
+.+..++.++...||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999998887
No 133
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.47 E-value=3.1e-13 Score=147.04 Aligned_cols=220 Identities=22% Similarity=0.313 Sum_probs=134.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEe--e
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC--S 397 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------gvpfi~i--s 397 (731)
....|++|+|++++++.|.-.+- + ....++||+||||||||++|+++|+-+ ++|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~---------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---D---------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---c---------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999987764221 0 112469999999999999999999987 3322111 1
Q ss_pred c-hhh---------------HHHhhccchHHHHH--HHHHH-------------HhcCCeEEEEcccchhhcccCCcccc
Q 004770 398 A-SEF---------------VELYVGMGASRVRD--LFARA-------------KKEAPSIIFIDEIDAVAKSRDGRFRI 446 (731)
Q Consensus 398 ~-se~---------------~~~~vG~~~~~vr~--lF~~A-------------~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (731)
+ .++ ...-.+.++.++-. .|+.+ ......+||||||+.+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~------- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH------- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------
Confidence 1 000 00000111111100 01111 0011249999999987532
Q ss_pred cchHHHHHHHHHHHHhhcCC-----------CCCCcEEEEEEcCCCC-CCCccccCCCccceEEEeeCCCH-HHHHHHHH
Q 004770 447 VSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGREAILK 513 (731)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd~-~eR~eILk 513 (731)
+.+.|+..|+.- .....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++
T Consensus 144 --------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 144 --------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred --------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 334555555421 1235689999999754 68999998 9999999998876 89999998
Q ss_pred HHHhcCC-----------------------------CCCcccC--CHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhhCCc
Q 004770 514 VHVSKKE-----------------------------LPLAKDI--DLGDIASMTT-GFTGADLANLVNEAALLAGRLNKV 561 (731)
Q Consensus 514 ~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~-G~SgadL~~Lv~eAa~~A~r~~~~ 561 (731)
....... +.+++++ .+..++..+. .-..+++. +++.|...|..+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7543210 0000000 0112222222 12345565 999999999999999
Q ss_pred cccHHHHHHHHHHHh
Q 004770 562 VVEKIDFIHAVERSI 576 (731)
Q Consensus 562 ~It~~d~~~Alervi 576 (731)
.|+.+|+.++..-++
T Consensus 293 ~V~~~Di~~~~~~vl 307 (334)
T PRK13407 293 AVGRSHLRSVATMAL 307 (334)
T ss_pred eeCHHHHHHHHHHhh
Confidence 999999988775544
No 134
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=7.8e-13 Score=147.32 Aligned_cols=179 Identities=30% Similarity=0.392 Sum_probs=115.7
Q ss_pred cccCChHhHHHHHHHHHH----hcCh-hHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hh
Q 004770 333 DVAGVDEAKEELEEIVEF----LRSP-DKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LY 405 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~----Lk~p-~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~-~~ 405 (731)
-|+|++++|+.|...+.. ++.. ..-...+. ..+.++||+||||||||++|+++|..+++||..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 479999999999776621 1110 00000001 12468999999999999999999999999999999887653 47
Q ss_pred hccch-HHHHHHHHHH----HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-----------C
Q 004770 406 VGMGA-SRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-----------N 469 (731)
Q Consensus 406 vG~~~-~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-----------~ 469 (731)
+|... ..+..++..+ ....++||||||||.+..++.... ...+...+.+.+.||+.|+|... .
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s-~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS-ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc-ccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 77643 3344444322 234678999999999987543210 01111112455667777765321 2
Q ss_pred CcEEEEEEcCCC---------------------------C-----------------------CCCccccCCCccceEEE
Q 004770 470 SAVIVLGATNRS---------------------------D-----------------------VLDPALRRPGRFDRVVM 499 (731)
Q Consensus 470 ~~VIVIaATN~p---------------------------d-----------------------~LDpALlRpGRFdr~I~ 499 (731)
.+.++|.|+|-. + -+.|+|+ ||+|.++.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 346777777751 0 0234454 59999999
Q ss_pred eeCCCHHHHHHHHHH
Q 004770 500 VETPDKIGREAILKV 514 (731)
Q Consensus 500 v~~Pd~~eR~eILk~ 514 (731)
+.+.+.++..+|+..
T Consensus 315 f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 315 LEKLDEEALIAILTK 329 (413)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999998876
No 135
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.44 E-value=3.8e-12 Score=140.87 Aligned_cols=229 Identities=21% Similarity=0.259 Sum_probs=163.7
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeech
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~s 399 (731)
-.+..||++.+.-+.-.....-....-..| ...-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~-------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP-------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc-------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 457789999887666444333333333332 2234569999999999999999999876 3468999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
+|...++......-.+-|+.-. +-.+++||+|+.+.++.. ...+.-.++|.+.. +.+-+|+.+..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l~~-------~~kqIvltsdr 217 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNALLE-------NGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHHHh-------cCCEEEEEcCC
Confidence 9988776654444445566555 345999999999875532 12333334444332 34456666666
Q ss_pred CCCCC---CccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 480 RSDVL---DPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 480 ~pd~L---DpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
.|..| .|.|.+ ||. ..+.+.+|+.+.|.+||+......++.+++++ +..++.+... +.++|+.+++.....
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 66554 588887 775 57788999999999999999988888877765 6677777665 789999999998888
Q ss_pred HHhhCCccccHHHHHHHHHHHhcccc
Q 004770 555 AGRLNKVVVEKIDFIHAVERSIAGIE 580 (731)
Q Consensus 555 A~r~~~~~It~~d~~~Alervi~g~~ 580 (731)
|...++ .||.+.+.+++.......+
T Consensus 294 a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 294 ALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 876654 8999999999987776544
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.44 E-value=1.8e-12 Score=154.19 Aligned_cols=166 Identities=22% Similarity=0.321 Sum_probs=116.4
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-----Hhhc
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----LYVG 407 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~-----~~vG 407 (731)
.|+|++++++.|.+.+...+..-. ...++...+||+||||||||++|+++|..++.+|+.++++++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999988865432100 00122346999999999999999999999999999999998754 3333
Q ss_pred cchHH-----HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC--CC-------CCcEE
Q 004770 408 MGASR-----VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DS-------NSAVI 473 (731)
Q Consensus 408 ~~~~~-----vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~-------~~~VI 473 (731)
..... -..+.+..+....|||||||||++.+ .+.+.||..||.- .. -.+++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 22111 11222333445568999999999742 2456667666531 11 14678
Q ss_pred EEEEcCCC-------------------------CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 004770 474 VLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (731)
Q Consensus 474 VIaATN~p-------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (731)
+|+|||.- ..+.|.++. |+|.+|.|.+.+.++..+|+..++.+
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999832 125577776 99999999999999999999887753
No 137
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.44 E-value=4.8e-13 Score=147.99 Aligned_cols=175 Identities=30% Similarity=0.425 Sum_probs=126.8
Q ss_pred cccCChHhHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hhhc-c
Q 004770 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~-Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~-~~vG-~ 408 (731)
.|+|++++|+.+...+.. ++......... -..|+++||+||||||||++|+++|+.++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 499999999999776632 11110000000 123689999999999999999999999999999999998886 5887 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 004770 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (731)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (731)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566677766661
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 004770 422 -----------------------------------------------------------------------KEAPSIIFI 430 (731)
Q Consensus 422 -----------------------------------------------------------------------~~aP~ILfI 430 (731)
...-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012349999
Q ss_pred cccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--------CCCcEEEEEEc----CCCCCCCccccCCCccceEE
Q 004770 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGRFDRVV 498 (731)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaAT----N~pd~LDpALlRpGRFdr~I 498 (731)
||||+++.+.+.. +.+-..+.+-..||..|+|-. ...+|++||+- ..|+.|-|.|. |||..++
T Consensus 256 DEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRV 330 (443)
T ss_pred EcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 9999999765321 222233446678888888732 23578888876 34667778887 5999999
Q ss_pred EeeCCCHHHHHHHH
Q 004770 499 MVETPDKIGREAIL 512 (731)
Q Consensus 499 ~v~~Pd~~eR~eIL 512 (731)
.+..++.++...||
T Consensus 331 ~L~~L~~~dL~~IL 344 (443)
T PRK05201 331 ELDALTEEDFVRIL 344 (443)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999998887
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=2.9e-12 Score=153.01 Aligned_cols=163 Identities=27% Similarity=0.371 Sum_probs=116.8
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCC---CCCC-eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH---
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--- 404 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~---~~pk-gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~--- 404 (731)
+.|+|++++++.|.+.+...+ .|. ..|. .+||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~-------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR-------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh-------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 358899999888887776432 122 2344 48999999999999999999999999999999988652
Q ss_pred --hhccch-----HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC---------C
Q 004770 405 --YVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (731)
Q Consensus 405 --~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~ 468 (731)
..|... .....+.+..+....+||+|||||.+.+ ...+.|++.||... .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCCcccC
Confidence 222211 1222344444556678999999998742 24566777666421 0
Q ss_pred CCcEEEEEEcCCCC-------------------------CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 004770 469 NSAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (731)
Q Consensus 469 ~~~VIVIaATN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (731)
-.++++|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.+
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 13578899998631 24566765 99999999999999999999988753
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6.8e-12 Score=146.68 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=144.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE--------e-
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS--------C- 396 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~--------i- 396 (731)
..+.+|+||+|++++++.|...+. ..+.|..+|||||+|+|||++|+++|+.+.+.-.. |
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 356789999999999998888764 23567779999999999999999999987642100 0
Q ss_pred echhhHHH-------hh---ccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh
Q 004770 397 SASEFVEL-------YV---GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (731)
Q Consensus 397 s~se~~~~-------~v---G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (731)
+|..+.+. +- ..+...++++.+.+... ...|++|||+|.|.. ...+.|+..
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK~ 144 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLKT 144 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHHH
Confidence 11111100 00 11235577777666432 234999999998842 245788888
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHH
Q 004770 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (731)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (731)
|+... ..+++|.+|+.+..|-++|++ |. ..+.|..++.++....++..+.+.++.++++ .++.|+..+.| +.+
T Consensus 145 LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-dlr 217 (614)
T PRK14971 145 LEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-GMR 217 (614)
T ss_pred HhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 88533 345666677677888899987 53 4799999999999999999888877765544 46778888755 777
Q ss_pred HHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 543 dL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
++.++++.....+. .. |+.+++.+.+
T Consensus 218 ~al~~Lekl~~y~~---~~-It~~~V~~~l 243 (614)
T PRK14971 218 DALSIFDQVVSFTG---GN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHhcc---CC-ccHHHHHHHh
Confidence 77777776655442 12 6666555544
No 140
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.9e-12 Score=137.38 Aligned_cols=219 Identities=21% Similarity=0.283 Sum_probs=153.1
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----EEEeechhhHHHh
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISCSASEFVELY 405 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp-----fi~is~se~~~~~ 405 (731)
-+.+.+.++..++|..++... +....|.++++|||||||||.+++.+++++.-+ +++++|....+.|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 344889999888887775432 224556679999999999999999999987433 8999987654422
Q ss_pred ---------------hccchHHH-HHHHHHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC
Q 004770 406 ---------------VGMGASRV-RDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (731)
Q Consensus 406 ---------------vG~~~~~v-r~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~ 468 (731)
.|.....+ ..+++... ....-||++||+|.|....+ .++..|+...+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~-- 153 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--
Confidence 11112222 22222222 23456999999999975532 5677777776644
Q ss_pred CCcEEEEEEcCCC---CCCCccccCCCcc-ceEEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHHHHH---HhCCCC
Q 004770 469 NSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIA---SMTTGF 539 (731)
Q Consensus 469 ~~~VIVIaATN~p---d~LDpALlRpGRF-dr~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~LA---~~t~G~ 539 (731)
..+|.+|+.+|.. +.+|+.+.+ +| ...|.|++.+.+|..+||+...... ...++++ -++.+| ....|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~-vl~lia~~~a~~~G- 229 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDD-VLKLIAALVAAESG- 229 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHcCc-
Confidence 5778999999876 578888877 44 3458999999999999999988642 1112222 233333 33334
Q ss_pred CHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 004770 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (731)
Q Consensus 540 SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alerv 575 (731)
..+-...+++.|+..|.+++...++.+++..|.+..
T Consensus 230 DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 556677899999999999999999999999995443
No 141
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.40 E-value=6.3e-12 Score=137.37 Aligned_cols=222 Identities=21% Similarity=0.267 Sum_probs=140.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-------CcEEEee--
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCS-- 397 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-------vpfi~is-- 397 (731)
+...|++|+|++++|..|.-.+ .+| ...|+||.||+|||||++||++++-+. .||....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4678999999999998776543 222 235899999999999999999977652 3443100
Q ss_pred ----chhhHHHh-------------------hccchHH------HHHHHHHHH---------hcCCeEEEEcccchhhcc
Q 004770 398 ----ASEFVELY-------------------VGMGASR------VRDLFARAK---------KEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 398 ----~se~~~~~-------------------vG~~~~~------vr~lF~~A~---------~~aP~ILfIDEIDaL~~~ 439 (731)
++++.... .+..+.+ +...|.... .....+||||||+.+...
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 00111000 1112221 111222111 112349999999998543
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcC---------C--CCCCcEEEEEEcCCCC-CCCccccCCCccceEEEeeCCC-HH
Q 004770 440 RDGRFRIVSNDEREQTLNQLLTEMDG---------F--DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPD-KI 506 (731)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg---------~--~~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd-~~ 506 (731)
. ...|+..|+. . ....++++|++.|..+ .+.++|+. ||..++.+..|+ .+
T Consensus 160 ~---------------Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 160 L---------------VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred H---------------HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 2 2334444432 1 1235788898888665 69999998 999999999998 59
Q ss_pred HHHHHHHHHHhcCCC-----------------------------CCcccC--CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 507 GREAILKVHVSKKEL-----------------------------PLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 507 eR~eILk~~l~~~~l-----------------------------~l~~dv--dl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
.+.+|++........ .+++.+ -+..++..+.--+++--..+++-|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 999999875431100 011110 0122333333336677778888899999
Q ss_pred HhhCCccccHHHHHHHHHHHhc
Q 004770 556 GRLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 556 ~r~~~~~It~~d~~~Alervi~ 577 (731)
.-+++..|+.+|+..+..-++.
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999877664
No 142
>PRK09087 hypothetical protein; Validated
Probab=99.39 E-value=3.9e-12 Score=131.52 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=118.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCccc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (731)
+.++|+||+|+|||+|+++++...++.++ +..++...+. ..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC-------
Confidence 34999999999999999999998776644 3333322221 11111 3789999997621
Q ss_pred ccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC---CCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCC
Q 004770 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKE 520 (731)
Q Consensus 446 ~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~ 520 (731)
...+ +-.+++.+. .+.+.+||+++..|.. ..+.|++ ||. ..+.+..|+.++|.+|++.++...+
T Consensus 102 --~~~~----lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 102 --DETG----LFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred --CHHH----HHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 1112 333333332 2234566666655542 3677887 764 7899999999999999999998887
Q ss_pred CCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 004770 521 LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (731)
Q Consensus 521 l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alerv 575 (731)
+.+++++ ++.|+++..+ +.+.+..+++.....+...+ ..||...+++++...
T Consensus 171 ~~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 171 LYVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 7777664 7888888876 77888887777665555444 568988888888653
No 143
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=5.7e-12 Score=137.41 Aligned_cols=219 Identities=22% Similarity=0.266 Sum_probs=136.1
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEE--------
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI-------- 394 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------gvpfi-------- 394 (731)
-|..|+|++++|..|.-.+ -+| ...++||.|+||+|||+|++++++-+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999998764322 121 23479999999999999999999866 33332
Q ss_pred E-eechh---h-------------HHHhhccchHHHHHHH--HHH-------------HhcCCeEEEEcccchhhcccCC
Q 004770 395 S-CSASE---F-------------VELYVGMGASRVRDLF--ARA-------------KKEAPSIIFIDEIDAVAKSRDG 442 (731)
Q Consensus 395 ~-is~se---~-------------~~~~vG~~~~~vr~lF--~~A-------------~~~aP~ILfIDEIDaL~~~r~~ 442 (731)
. .+|.. + .+.-.+..+.++-... +.+ .+....+||||||+.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~--- 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH--- 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH---
Confidence 0 01110 0 1111111111111111 110 0112359999999987532
Q ss_pred cccccchHHHHHHHHHHHHhhcCC-----------CCCCcEEEEEEcCCCC-CCCccccCCCccceEEEeeCCCH-HHHH
Q 004770 443 RFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGRE 509 (731)
Q Consensus 443 ~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~v~~Pd~-~eR~ 509 (731)
+.+.|+..|+.- ....++++|++.|..+ .++++|+. ||..++.++.|+. ++|.
T Consensus 147 ------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 147 ------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 224444444321 1134688999988655 69999998 9999999999875 8889
Q ss_pred HHHHHHHhcCC-----------------------------CCCcccC--CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 510 AILKVHVSKKE-----------------------------LPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 510 eILk~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
+|++....... +.+++++ .+..++..+..-+.+....+++-|...|..+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 99987432210 0011111 0222333443335677788999999999999
Q ss_pred CCccccHHHHHHHHHHHhc
Q 004770 559 NKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 559 ~~~~It~~d~~~Alervi~ 577 (731)
++..|+.+|+..+..-++.
T Consensus 293 GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877664
No 144
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.36 E-value=1.2e-11 Score=114.30 Aligned_cols=124 Identities=40% Similarity=0.610 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccchHH---HHHHHHHHHhcCCeEEEEcccchhh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 437 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~~~~~---vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (731)
..++++|+||||||||++++.+++.+ +.+++.+++.+............ ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 89999999887765433222111 1222334445668899999999872
Q ss_pred cccCCcccccchHHHHHHHHHHHHhhcCC-CCCCcEEEEEEcCCCC--CCCccccCCCccceEEEee
Q 004770 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGF-DSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 501 (731)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~v~ 501 (731)
.. ....+.+++..+... ....++.+|+++|... .+++.+.. ||+.++.++
T Consensus 98 ~~------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11 111222223322111 1236788889998876 67777776 888776664
No 145
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=5.2e-12 Score=136.38 Aligned_cols=206 Identities=17% Similarity=0.188 Sum_probs=130.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH--hhccchHH----------HHHHHHHHHhcCCeEEEEcc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASR----------VRDLFARAKKEAPSIIFIDE 432 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~--~vG~~~~~----------vr~lF~~A~~~aP~ILfIDE 432 (731)
.++|||.||||||||++|+.+|.+++.|++.+++...... ++|...-. ....+..|.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4579999999999999999999999999999998876654 44432111 1122334433 467999999
Q ss_pred cchhhcccCCcccccchHHHHHHHHHHHHh-----hc----CCCCCCcEEEEEEcCCCC------------CCCccccCC
Q 004770 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MD----GFDSNSAVIVLGATNRSD------------VLDPALRRP 491 (731)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----md----g~~~~~~VIVIaATN~pd------------~LDpALlRp 491 (731)
||...++ ....|+.+|.. ++ .+..+..+.||||.|..+ .|++|++.
T Consensus 143 in~a~p~------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAGRPD------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhccCHH------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9986322 22345556552 11 123456789999999854 46889998
Q ss_pred CccceEEEeeCCCHHHHHHHHHHHHhcCCCCCc-ccC--CHHHHH---H-------hCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 492 GRFDRVVMVETPDKIGREAILKVHVSKKELPLA-KDI--DLGDIA---S-------MTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 492 GRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~-~dv--dl~~LA---~-------~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
||-..+.++.|+.++..+|++....... ... +.+ .+-.+| + ...++|++.+..+++.+...
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~~~-~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f---- 283 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKGFD-DTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF---- 283 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccCCC-ccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh----
Confidence 9988889999999999999987653211 000 000 011122 2 13456777777776655433
Q ss_pred CCccccHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhccceee
Q 004770 559 NKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVV 604 (731)
Q Consensus 559 ~~~~It~~d~~~Alervi~g~~~~~~~l~~~ek~~iA~hEaGHAlv 604 (731)
+ .++..|++..+..-+ ++..+.++||.-....
T Consensus 284 ~------~~~~~a~~~~~~n~~--------~~~er~~~~e~~q~~f 315 (327)
T TIGR01650 284 D------HDIALAFRLTFLNKC--------DELERPTVAEFFQRAF 315 (327)
T ss_pred C------ccHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHc
Confidence 1 267777776654321 2233455677554443
No 146
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.33 E-value=1.5e-11 Score=144.72 Aligned_cols=215 Identities=23% Similarity=0.283 Sum_probs=139.0
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------------------- 389 (731)
-|.+|+|++++|..|.-.. .+| ...+|||.|+||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999987664332 121 12469999999999999999999877
Q ss_pred ---------------CCcEEEeechhhHHHhhccc--hHHH--------HHHHHHHHhcCCeEEEEcccchhhcccCCcc
Q 004770 390 ---------------EVPFISCSASEFVELYVGMG--ASRV--------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (731)
Q Consensus 390 ---------------gvpfi~is~se~~~~~vG~~--~~~v--------r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (731)
..||+.+.++...+..+|.. ...+ ..++..| ...|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 35777766554433333321 0000 0111111 2249999999998532
Q ss_pred cccchHHHHHHHHHHHHhhcCC-----------CCCCcEEEEEEcCCC-CCCCccccCCCccceEEEeeCCC-HHHHHHH
Q 004770 445 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPD-KIGREAI 511 (731)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~p-d~LDpALlRpGRFdr~I~v~~Pd-~~eR~eI 511 (731)
+.+.|+..|+.- .....+++|+|+|.. ..|.++|+. ||+.+|.++.|. .+++.++
T Consensus 142 ----------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 142 ----------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ----------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 345566655421 112468999999954 368899998 999889888764 5777777
Q ss_pred HHHHHhcC-----------------------------CCCCcccCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHhhC
Q 004770 512 LKVHVSKK-----------------------------ELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLN 559 (731)
Q Consensus 512 Lk~~l~~~-----------------------------~l~l~~dvdl~~LA~~t--~G~-SgadL~~Lv~eAa~~A~r~~ 559 (731)
++..+... .+.+.++ .++.++..+ .|. +.+....+++-|...|..++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g 288 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDG 288 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 76543210 0111111 122232222 244 45666778888989999999
Q ss_pred CccccHHHHHHHHHHHhc
Q 004770 560 KVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 560 ~~~It~~d~~~Alervi~ 577 (731)
+..|+.+|+.+|++-++.
T Consensus 289 r~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLP 306 (633)
T ss_pred CCcCCHHHHHHHHHHHhh
Confidence 999999999999988774
No 147
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.30 E-value=1.1e-10 Score=136.45 Aligned_cols=104 Identities=23% Similarity=0.356 Sum_probs=68.3
Q ss_pred CcEEEEEEcCCC--CCCCccccCCCccc---eEEEeeC--CC-HHHHHHHHHHHH---hcC-CCC-CcccCCHHHHHH--
Q 004770 470 SAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--PD-KIGREAILKVHV---SKK-ELP-LAKDIDLGDIAS-- 534 (731)
Q Consensus 470 ~~VIVIaATN~p--d~LDpALlRpGRFd---r~I~v~~--Pd-~~eR~eILk~~l---~~~-~l~-l~~dvdl~~LA~-- 534 (731)
..+.||+++|.. ..+||+|+. ||+ ..+.++. |+ .+.+.++.+... ++. .++ ++++ .+..|.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~-Av~~Li~~~ 343 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRD-AVEEIVREA 343 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHH-HHHHHHHHH
Confidence 367899999864 578999998 998 6666542 44 555655544433 222 122 2221 1233321
Q ss_pred -hCC------CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 535 -MTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 535 -~t~------G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
+.. ..+.++|.+++++|...|..+++..|+.+|+.+|++...
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 135799999999998888888889999999999987654
No 148
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.29 E-value=3.9e-11 Score=130.25 Aligned_cols=67 Identities=39% Similarity=0.577 Sum_probs=53.8
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHH
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se~~~ 403 (731)
..+.++|+.++++..--+++..+..+ -..+++||.||||||||.||-++|+++| +||+.++++++.+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 45689999999999999998877643 3578999999999999999999999997 8999999988764
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=5.1e-11 Score=144.09 Aligned_cols=163 Identities=29% Similarity=0.386 Sum_probs=112.2
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH---
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~--- 404 (731)
+.|+|++++.+.+.+.+...+..-. ....|.+ +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4689999999888877754321100 0134555 7999999999999999999988 468899999988653
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--C-----
Q 004770 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S----- 468 (731)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~----- 468 (731)
|+|..... .+.+..+.+..+||+|||||...+ .+.+.|++.+|.-. .
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCCCcE
Confidence 33332211 123444556678999999986532 24455666665321 0
Q ss_pred --CCcEEEEEEcCCCC-----------------------------CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHh
Q 004770 469 --NSAVIVLGATNRSD-----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (731)
Q Consensus 469 --~~~VIVIaATN~pd-----------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~ 517 (731)
-.+.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|++..+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 14578899998521 14566666 887 899999999999999988775
Q ss_pred c
Q 004770 518 K 518 (731)
Q Consensus 518 ~ 518 (731)
+
T Consensus 782 ~ 782 (852)
T TIGR03345 782 R 782 (852)
T ss_pred H
Confidence 4
No 150
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.27 E-value=1.4e-10 Score=126.12 Aligned_cols=135 Identities=30% Similarity=0.380 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHH------HHHHH--hcCC--eEEEEcccc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDL------FARAK--KEAP--SIIFIDEID 434 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~l------F~~A~--~~aP--~ILfIDEID 434 (731)
..++||.||||||||+||+++|..++.+|+.+.|......--..+...+... |.... .... +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 3469999999999999999999999999999999865542111111111111 00000 0001 499999998
Q ss_pred hhhcccCCcccccchHHHHHHHHHHHHhhcC----------CCCCCcEEEEEEcC-----CCCCCCccccCCCccceEEE
Q 004770 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDG----------FDSNSAVIVLGATN-----RSDVLDPALRRPGRFDRVVM 499 (731)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg----------~~~~~~VIVIaATN-----~pd~LDpALlRpGRFdr~I~ 499 (731)
...+ .+.+.||..|+. +.-..+++||+|.| ....|++|+++ ||...++
T Consensus 123 ra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~ 185 (329)
T COG0714 123 RAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIY 185 (329)
T ss_pred cCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEe
Confidence 7542 234556665554 33457789999999 44678999998 9988999
Q ss_pred eeCCCHHHHHHHHHHHH
Q 004770 500 VETPDKIGREAILKVHV 516 (731)
Q Consensus 500 v~~Pd~~eR~eILk~~l 516 (731)
++.|+.++-+.++..+.
T Consensus 186 v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 186 VDYPDSEEEERIILARV 202 (329)
T ss_pred cCCCCchHHHHHHHHhC
Confidence 99995444444444333
No 151
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.26 E-value=1.2e-10 Score=133.08 Aligned_cols=212 Identities=22% Similarity=0.286 Sum_probs=132.3
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc------------------
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------------------ 389 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el------------------ 389 (731)
...|+||.|++.+++.+.-.+ ....+++|+||||||||++++++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 348999999999877655432 334679999999999999999998632
Q ss_pred ----------CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHH
Q 004770 390 ----------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (731)
Q Consensus 390 ----------gvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 459 (731)
..||...+++......+|.+...-...+..|. ..+|||||++.+... .+..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~~---------------~~~~L 315 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKRS---------------VLDAL 315 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCHH---------------HHHHH
Confidence 13444443333222233332211122334443 349999999987422 33444
Q ss_pred HHhhcCCC-----------CCCcEEEEEEcCCC------C-----------------CCCccccCCCccceEEEeeCCCH
Q 004770 460 LTEMDGFD-----------SNSAVIVLGATNRS------D-----------------VLDPALRRPGRFDRVVMVETPDK 505 (731)
Q Consensus 460 L~emdg~~-----------~~~~VIVIaATN~p------d-----------------~LDpALlRpGRFdr~I~v~~Pd~ 505 (731)
+..|+... -..++.+|+++|.- + .|..+|+. |||.++.++.++.
T Consensus 316 ~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~ 393 (499)
T TIGR00368 316 REPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPP 393 (499)
T ss_pred HHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCH
Confidence 44443211 12468999999852 1 48888888 9999999997755
Q ss_pred HHH-------------HHHHHHHHhc----CCC---CCcccCCHHH----------------HHHhCCCCCHHHHHHHHH
Q 004770 506 IGR-------------EAILKVHVSK----KEL---PLAKDIDLGD----------------IASMTTGFTGADLANLVN 549 (731)
Q Consensus 506 ~eR-------------~eILk~~l~~----~~l---~l~~dvdl~~----------------LA~~t~G~SgadL~~Lv~ 549 (731)
.+. +.+.+..-.+ .+. .+..++.-.. -+....++|.+....+++
T Consensus 394 ~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr 473 (499)
T TIGR00368 394 EKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK 473 (499)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 432 2222221111 010 1111111111 122334689999999999
Q ss_pred HHHHHHHhhCCccccHHHHHHHHH
Q 004770 550 EAALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 550 eAa~~A~r~~~~~It~~d~~~Ale 573 (731)
-|...|..++...|+.+|+.+|+.
T Consensus 474 vArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 474 VARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999984
No 152
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.26 E-value=1.3e-10 Score=123.76 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=142.0
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeech-
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS- 399 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~s- 399 (731)
.=+.-+|+..+++.|..+.+.+..|++ .+ +.++||+|++|.|||++++.++... .+|++.+.+.
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~-----~R-mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKR-----HR-MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcc-----cC-CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 345679999999999999988888865 33 4469999999999999999999754 3688877643
Q ss_pred -----hhHHHh---hc------cc-hHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc
Q 004770 400 -----EFVELY---VG------MG-ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (731)
Q Consensus 400 -----e~~~~~---vG------~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 464 (731)
.|.... .| .. .+.-.......+...+.+|+|||+|.+... .....+.++|.|-...+
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGN 177 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhh
Confidence 121110 01 11 122223344555667779999999997532 33344555555444322
Q ss_pred CCCCCCcEEEEEEcCCCC--CCCccccCCCccceEEEeeCCC-HHHHHHHHHHHHhcCCCCCcccCCH----HHHHHhCC
Q 004770 465 GFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDL----GDIASMTT 537 (731)
Q Consensus 465 g~~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~v~~Pd-~~eR~eILk~~l~~~~l~l~~dvdl----~~LA~~t~ 537 (731)
.-+-.++.+++-.-.. .-|+.+-+ ||+ .+.++... .++-..++..+-..-.+.-..++.. ..|-..+.
T Consensus 178 --eL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 178 --ELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred --ccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 2234556666543322 23677766 887 45555433 3444556666654432322333333 34456777
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (731)
| +.+++.++++.|+..|.+.+++.||.+.++.
T Consensus 253 G-~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 253 G-LIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred C-chHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 7 5688999999999999999999999988765
No 153
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.5e-10 Score=127.23 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=126.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEe--
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC-- 396 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-------pfi~i-- 396 (731)
..+..|++|+|++++++.|...+. ..+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 346689999999999999988764 2456778999999999999999999998755 21110
Q ss_pred --echhhHHH--------h-h-------------ccchHHHHHHHHHHH----hcCCeEEEEcccchhhcccCCcccccc
Q 004770 397 --SASEFVEL--------Y-V-------------GMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVS 448 (731)
Q Consensus 397 --s~se~~~~--------~-v-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~ 448 (731)
.|..+... + + .-+...+|++-+... .....|++|||+|.+..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 11111100 0 0 001234444433322 23456999999999842
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCC
Q 004770 449 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDID 528 (731)
Q Consensus 449 ~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvd 528 (731)
...|.||..++... .+.++|..|+.++.+.|.+++ |. ..+.+++|+.++..++|+...... .++++ .
T Consensus 156 -----~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~--~~~~~-~ 222 (351)
T PRK09112 156 -----NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ--GSDGE-I 222 (351)
T ss_pred -----HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--CCCHH-H
Confidence 24577888888533 445555567778888899987 65 499999999999999998743221 12222 2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHH
Q 004770 529 LGDIASMTTGFTGADLANLVNEA 551 (731)
Q Consensus 529 l~~LA~~t~G~SgadL~~Lv~eA 551 (731)
+..+++.+.| +++...++++..
T Consensus 223 ~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 223 TEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHHHHHHcCC-CHHHHHHHHhcC
Confidence 5566777766 666666666543
No 154
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.26 E-value=8.4e-11 Score=135.18 Aligned_cols=223 Identities=20% Similarity=0.162 Sum_probs=133.3
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEEe---echhhHHHhhcc
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISC---SASEFVELYVGM 408 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-pfi~i---s~se~~~~~vG~ 408 (731)
++.|++.+|..|.-.+---..+..-.....+...+|||+|+||||||++|+++++.... +|+.. ++..+.......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 58899998776643332111111000112234457999999999999999999998753 33321 222221100000
Q ss_pred ---chHHHH-HHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-----------CCCcEE
Q 004770 409 ---GASRVR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVI 473 (731)
Q Consensus 409 ---~~~~vr-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VI 473 (731)
+...++ ..+..| ...+++|||+|.+... ....|+..|+.-. -+..+.
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~---------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDS---------------DRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCHH---------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 000000 011112 2349999999998532 2233444443211 135688
Q ss_pred EEEEcCCCC-------------CCCccccCCCccceEEEe-eCCCHHHHHHHHHHHHhcCC------C-CC---------
Q 004770 474 VLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKE------L-PL--------- 523 (731)
Q Consensus 474 VIaATN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~eILk~~l~~~~------l-~l--------- 523 (731)
||||+|..+ .|++++++ |||..+.+ +.|+.+...+|+++.+.... . ..
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 999999752 58999999 99987655 78999999888887543210 0 00
Q ss_pred -----------cccCC---HHHHH-----Hh----------CCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 524 -----------AKDID---LGDIA-----SM----------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 524 -----------~~dvd---l~~LA-----~~----------t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
.+.+. .+.|. .+ ..+.|++.++.+++-|...|..+.+..|+.+|+.+|++-
T Consensus 424 ~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 424 RKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 01111 11110 01 235689999999999999999999999999999999864
Q ss_pred H
Q 004770 575 S 575 (731)
Q Consensus 575 v 575 (731)
+
T Consensus 504 ~ 504 (509)
T smart00350 504 L 504 (509)
T ss_pred H
Confidence 3
No 155
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.26 E-value=2.2e-10 Score=117.48 Aligned_cols=195 Identities=22% Similarity=0.334 Sum_probs=134.3
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~ 401 (731)
..+.+.+.|++|.+.+|+.|.+-...+.. ..+..+|||+|..|||||+|+||+.++. +..++.|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 44679999999999999998765443322 4566789999999999999999998876 677999988777
Q ss_pred HHHhhccchHHHHHHHHHHHhc-CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC--CCCCcEEEEEEc
Q 004770 402 VELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 478 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~~~~VIVIaAT 478 (731)
.. +-.+++..+.. ..-|||+|++-- . .+ +.....|-..|||- ....+|+|.||+
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---e--------~g---d~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF---E--------EG---DDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC---C--------CC---chHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 43 44556655543 356999998621 0 11 12234455556653 224689999999
Q ss_pred CCCCCCCccc--------------------cCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc-CCHHHH--HHh
Q 004770 479 NRSDVLDPAL--------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDI--ASM 535 (731)
Q Consensus 479 N~pd~LDpAL--------------------lRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl~~L--A~~ 535 (731)
|+.+.|+... .-+-||...+.|.+++.++..+|+..++++.++.++++ .+.+.+ |..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9866554221 11359999999999999999999999998877765421 122222 334
Q ss_pred CCCCCHHHHHHHHHH
Q 004770 536 TTGFTGADLANLVNE 550 (731)
Q Consensus 536 t~G~SgadL~~Lv~e 550 (731)
..|-||+-..+.++.
T Consensus 262 rg~RSGR~A~QF~~~ 276 (287)
T COG2607 262 RGGRSGRVAWQFIRD 276 (287)
T ss_pred cCCCccHhHHHHHHH
Confidence 445566655555543
No 156
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.24 E-value=2.4e-10 Score=119.74 Aligned_cols=130 Identities=22% Similarity=0.293 Sum_probs=92.2
Q ss_pred CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC-------------CCCCCccccCC
Q 004770 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR-------------SDVLDPALRRP 491 (731)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~-------------pd~LDpALlRp 491 (731)
|.|+||||++.|-- ..+.-|-..++ +.-.-+||.|||+ |.-+++.|+.
T Consensus 297 PGVLFIDEVhMLDi---------------EcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI---------------ECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred CcceEeeehhhhhh---------------HHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 78999999887631 12233333333 1222367777776 5567777775
Q ss_pred CccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 004770 492 GRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (731)
Q Consensus 492 GRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (731)
|+ .+|...+.+.++.++|++......++.+.++ .++.++.....-|-+...+|+--|.+.|...++..|..+|++++
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~-a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEE-ALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHH-HHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 43 2455567888999999999998888776554 47777777766677888888888999999999999999999887
Q ss_pred HHHHh
Q 004770 572 VERSI 576 (731)
Q Consensus 572 lervi 576 (731)
-+-.+
T Consensus 435 ~~Lf~ 439 (456)
T KOG1942|consen 435 TELFL 439 (456)
T ss_pred HHHHH
Confidence 65433
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=2.1e-10 Score=139.19 Aligned_cols=202 Identities=21% Similarity=0.311 Sum_probs=127.2
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH----
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~---- 404 (731)
+.|+|++++.+.+.+.+...+..- ....++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 569999999999888776532100 0011234568999999999999999999976 568999999887542
Q ss_pred -hhccchH-----HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC--CC-------C
Q 004770 405 -YVGMGAS-----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DS-------N 469 (731)
Q Consensus 405 -~vG~~~~-----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~-------~ 469 (731)
..|.... ....+....+....+||+|||||.+.+ .+.+.||..|+.- .. -
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 2221111 112233334445557999999997632 2445666655421 11 1
Q ss_pred CcEEEEEEcCCCC-------------------------CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc------
Q 004770 470 SAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 518 (731)
Q Consensus 470 ~~VIVIaATN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~------ 518 (731)
.+.+||+|||... .+.|.|+. |+|.++.+.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999731 13356665 99999999999999999998877753
Q ss_pred -CCC--CCcccCCHHHHHHhCC--CCCHHHHHHHHHHHHHH
Q 004770 519 -KEL--PLAKDIDLGDIASMTT--GFTGADLANLVNEAALL 554 (731)
Q Consensus 519 -~~l--~l~~dvdl~~LA~~t~--G~SgadL~~Lv~eAa~~ 554 (731)
.++ .++++ .++.|+.... .+..+.|+++++.....
T Consensus 785 ~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 785 ERKITLELSDA-ALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred HCCCeecCCHH-HHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 111 11111 2344555422 44557777766665433
No 158
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2e-10 Score=135.23 Aligned_cols=210 Identities=24% Similarity=0.331 Sum_probs=148.5
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCc
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVP 392 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvp 392 (731)
++....-.++-|+|.++..+++.+++. .+...+-+|+|+||+|||.++..+|.+. +..
T Consensus 161 t~~Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~ 228 (786)
T COG0542 161 TELAREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKR 228 (786)
T ss_pred HHHHhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCE
Confidence 344456789999999997777766653 2444578999999999999999999864 567
Q ss_pred EEEeechhhHH--HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCC
Q 004770 393 FISCSASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (731)
Q Consensus 393 fi~is~se~~~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 470 (731)
+++.+.+.++. +|.|+.+++++.+.+...+..+.||||||||.+.+..... +. .-..-|-|.-.+. +.
T Consensus 229 i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G~---a~DAaNiLKPaLA----RG 298 (786)
T COG0542 229 IYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---GG---AMDAANLLKPALA----RG 298 (786)
T ss_pred EEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---cc---ccchhhhhHHHHh----cC
Confidence 88888888875 7999999999999999998889999999999997654321 10 0112233333332 45
Q ss_pred cEEEEEEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCC----CCCcccCCHHHHHH-----hC
Q 004770 471 AVIVLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIAS-----MT 536 (731)
Q Consensus 471 ~VIVIaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~----l~l~~dvdl~~LA~-----~t 536 (731)
.+-+|+||...+ .=|+||-| ||. .|.+..|+.++-..||+-.-.+.. +.+.++ .+..-+. .+
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~-Al~aAv~LS~RYI~ 374 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDE-ALVAAVTLSDRYIP 374 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHH-HHHHHHHHHHhhcc
Confidence 678898886432 34899999 997 789999999999999987665432 222222 1222222 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 004770 537 TGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 537 ~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
..|=|.-...++.+|+......
T Consensus 375 dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 375 DRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred cCCCCchHHHHHHHHHHHHHhc
Confidence 3344566678888887666543
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=2.6e-10 Score=137.98 Aligned_cols=166 Identities=22% Similarity=0.308 Sum_probs=113.9
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE---- 403 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~---- 403 (731)
+.|+|++++++.+...+...+..- .....|. .+||+||||||||+||+++|..+ ..+++.+++++|.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl----~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL----KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc----cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 568999999999988775422100 0012243 47999999999999999999987 46899999988754
Q ss_pred -Hhhccch-----HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC---------C
Q 004770 404 -LYVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (731)
Q Consensus 404 -~~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~ 468 (731)
...|..+ .....+.+..+....+||+|||+|++. ..+.+.|+..|+.-. .
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~---------------~~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH---------------PDIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC---------------HHHHHHHHHHhccCceecCCCcEEe
Confidence 2222111 112234455555555899999999864 234567777766321 1
Q ss_pred CCcEEEEEEcCCCCC-------------------------------------CCccccCCCccceEEEeeCCCHHHHHHH
Q 004770 469 NSAVIVLGATNRSDV-------------------------------------LDPALRRPGRFDRVVMVETPDKIGREAI 511 (731)
Q Consensus 469 ~~~VIVIaATN~pd~-------------------------------------LDpALlRpGRFdr~I~v~~Pd~~eR~eI 511 (731)
-.+.++|+|||.... +.|.++. |+|.+|.|.+.+.++..+|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 246889999985311 2245565 9999999999999999999
Q ss_pred HHHHHhc
Q 004770 512 LKVHVSK 518 (731)
Q Consensus 512 Lk~~l~~ 518 (731)
++..+.+
T Consensus 728 v~~~l~~ 734 (821)
T CHL00095 728 AEIMLKN 734 (821)
T ss_pred HHHHHHH
Confidence 9888754
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.21 E-value=3.5e-11 Score=109.70 Aligned_cols=126 Identities=33% Similarity=0.448 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeechhhHHH--------------hhccchHHHHHHHHHHHhcCCeE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEFVEL--------------YVGMGASRVRDLFARAKKEAPSI 427 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvp---fi~is~se~~~~--------------~vG~~~~~vr~lF~~A~~~aP~I 427 (731)
+..++|+||||||||++++++|..+..+ ++.++++..... .........+.++..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 888887754331 12344566778888888887899
Q ss_pred EEEcccchhhcccCCcccccchHHHHHHHHHH--HHhhcCCCCCCcEEEEEEcCC-CCCCCccccCCCccceEEEeeCC
Q 004770 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL--LTEMDGFDSNSAVIVLGATNR-SDVLDPALRRPGRFDRVVMVETP 503 (731)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L--L~emdg~~~~~~VIVIaATN~-pd~LDpALlRpGRFdr~I~v~~P 503 (731)
|||||++.+....... ..... ..............+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-----------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-----------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999986443210 00000 000011122355788888886 3334444444 88888887655
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.21 E-value=3.1e-10 Score=137.58 Aligned_cols=167 Identities=24% Similarity=0.351 Sum_probs=110.8
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCC-CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~p-kgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~-- 404 (731)
++.|+|++++.+.|.+.+...+..-. ....| ..+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 45689999999988888765331100 01123 358999999999999999999986 468999999988652
Q ss_pred ---hhccchHH----HHHHHHHH-HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC--CC------
Q 004770 405 ---YVGMGASR----VRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DS------ 468 (731)
Q Consensus 405 ---~vG~~~~~----vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~------ 468 (731)
..|..... -...+..+ +....+||+|||++.+.. .+.+.|+..++.- ..
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceecCCceEE
Confidence 12211000 01122333 333347999999987632 2345555555421 11
Q ss_pred -CCcEEEEEEcCCC-------------------------CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 004770 469 -NSAVIVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (731)
Q Consensus 469 -~~~VIVIaATN~p-------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (731)
-.+.+||+|||.. ..+.|+|+. |+|.++.+.+++.++..+|++.++.+
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 1245788899862 124567776 99999999999999999998888754
No 162
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=4.6e-10 Score=126.63 Aligned_cols=213 Identities=17% Similarity=0.142 Sum_probs=124.5
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh-hHHHhhccc
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-FVELYVGMG 409 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se-~~~~~vG~~ 409 (731)
.++|.+++.+.+...+ ....++||+||||||||++|++++..++. +|....+.- ......|..
T Consensus 21 ~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 4777887766555433 23456999999999999999999997643 555444321 112222211
Q ss_pred -hHHH--HHHHHHHHhc---CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC----C---C-CcEEEE
Q 004770 410 -ASRV--RDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----S---N-SAVIVL 475 (731)
Q Consensus 410 -~~~v--r~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----~---~-~~VIVI 475 (731)
.... ...|...... ...+||+|||..+.+ .+.+.||..|+.-. . + ...+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0110 1122221111 223999999986542 34566777763211 0 0 112445
Q ss_pred EEcCCCC---CCCccccCCCccceEEEeeCCC-HHHHHHHHHHHHhcCCCCC--cccCCH--------------------
Q 004770 476 GATNRSD---VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPL--AKDIDL-------------------- 529 (731)
Q Consensus 476 aATN~pd---~LDpALlRpGRFdr~I~v~~Pd-~~eR~eILk~~l~~~~l~l--~~dvdl-------------------- 529 (731)
+|||... ...+++.. ||-..+.+++|+ .++..+||.........+. ..-+..
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5557432 22348887 998889999997 4555778776432111111 111111
Q ss_pred ---HHHHHh---C---CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhc
Q 004770 530 ---GDIASM---T---TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 530 ---~~LA~~---t---~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~ 577 (731)
..|... + ...|++-...+++-|...|..+++..|+.+|+. .+.-++.
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 122221 2 237889999999999999999999999999998 5555544
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.7e-11 Score=139.12 Aligned_cols=161 Identities=29% Similarity=0.436 Sum_probs=118.3
Q ss_pred ccccCChHhHHHHHHHHHH----hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHHH
Q 004770 332 ADVAGVDEAKEELEEIVEF----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 404 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~----Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---vpfi~is~se~~~~ 404 (731)
+.|+|++++.+.+.+.+.. +.+|. +|-..+||.||+|+|||.|||++|..+. ..++.+++|+|.++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4699999999988887764 22221 2334578899999999999999999996 89999999999983
Q ss_pred ------------hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC---C
Q 004770 405 ------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---N 469 (731)
Q Consensus 405 ------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~---~ 469 (731)
|+|..+. -.+-+..+.+..|||++|||++-. -.++|-||+.||.-.- +
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH---------------pdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH---------------PDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC---------------HHHHHHHHHHhcCCeeecCC
Confidence 4444331 223344455557899999998742 2477888988874211 1
Q ss_pred ------CcEEEEEEcCCC----------------------------CCCCccccCCCccceEEEeeCCCHHHHHHHHHHH
Q 004770 470 ------SAVIVLGATNRS----------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (731)
Q Consensus 470 ------~~VIVIaATN~p----------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~ 515 (731)
.+.+||.|||-- ....|+++. |+|.+|.|.+.+.+...+|+..+
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 357899999841 013466665 99999999999999999998887
Q ss_pred Hhc
Q 004770 516 VSK 518 (731)
Q Consensus 516 l~~ 518 (731)
+.+
T Consensus 705 L~~ 707 (786)
T COG0542 705 LNR 707 (786)
T ss_pred HHH
Confidence 754
No 164
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=3e-10 Score=125.40 Aligned_cols=187 Identities=18% Similarity=0.159 Sum_probs=125.5
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------E----
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------I---- 394 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf-------i---- 394 (731)
..+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999999887652 45677899999999999999999999763311 0
Q ss_pred E---e-echhhHH-----------Hhh---cc--------chHHHHHHHHHHH----hcCCeEEEEcccchhhcccCCcc
Q 004770 395 S---C-SASEFVE-----------LYV---GM--------GASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRF 444 (731)
Q Consensus 395 ~---i-s~se~~~-----------~~v---G~--------~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~ 444 (731)
. + .|..... ... .. ....+|++-+.+. ...|.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0 0 1111100 000 11 1244666555443 3457799999999874
Q ss_pred cccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCc
Q 004770 445 RIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA 524 (731)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~ 524 (731)
....|.||..++. +..+.++|.+|+.++.+.+.+++ |. ..+.+++|+.++..++|...... .
T Consensus 155 --------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~- 216 (365)
T PRK07471 155 --------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----L- 216 (365)
T ss_pred --------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----C-
Confidence 2355888888884 33456777788889889888877 53 48999999999999888775421 1
Q ss_pred ccCCHHHHHHhCCCCCHHHHHHHHH
Q 004770 525 KDIDLGDIASMTTGFTGADLANLVN 549 (731)
Q Consensus 525 ~dvdl~~LA~~t~G~SgadL~~Lv~ 549 (731)
.+..+..++..+.| ++....++++
T Consensus 217 ~~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 217 PDDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 11123466777766 5655555543
No 165
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.18 E-value=6.7e-11 Score=136.15 Aligned_cols=208 Identities=23% Similarity=0.313 Sum_probs=126.3
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh-----------cCCcEEEee
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----------AEVPFISCS 397 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e-----------lgvpfi~is 397 (731)
.+|+|++|...+.+++.+.+..+. ..+..|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 579999999998888888765432 23446999999999999999999876 467999999
Q ss_pred chhhHHH-----hhccchH--------HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc
Q 004770 398 ASEFVEL-----YVGMGAS--------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (731)
Q Consensus 398 ~se~~~~-----~vG~~~~--------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 464 (731)
|+.+.+. ..|.... .-..+|+.|.. ..||||||+.|....+ ..|+..++
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q---------------~kLl~~L~ 347 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLPLQ---------------TRLLRVLE 347 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHHHH---------------HHHHhhhh
Confidence 9876432 2221110 11234555543 4899999999864332 23333332
Q ss_pred C-----CCC----CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeeCCCHHHHHH----HHHHHHhc----CC
Q 004770 465 G-----FDS----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KE 520 (731)
Q Consensus 465 g-----~~~----~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~----~~ 520 (731)
. ... ...+.+|++||.. |. .+...|+|.. .+.+..|...+|.+ ++++++.+ .+
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 1 111 2356899999865 22 2222334431 46778888877753 45555543 23
Q ss_pred CCCcccCC------HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHH
Q 004770 521 LPLAKDID------LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKID 567 (731)
Q Consensus 521 l~l~~dvd------l~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d 567 (731)
.++.+++- ++.|.....--+.++|++++++++..+.......++.++
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~ 477 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQF 477 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHH
Confidence 33333221 133444444447799999999988765322223444443
No 166
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.18 E-value=5.8e-10 Score=116.76 Aligned_cols=192 Identities=14% Similarity=0.186 Sum_probs=118.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEE---e----echhhHHH---hhccc---h------HHHHHHH-HHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV-PFIS---C----SASEFVEL---YVGMG---A------SRVRDLF-ARAKKE 423 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgv-pfi~---i----s~se~~~~---~vG~~---~------~~vr~lF-~~A~~~ 423 (731)
+..++|+||+|+|||++++.+++++.. .++. + +..++... ..|.. . ..+.+.+ ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 335889999999999999999998752 2221 1 11122211 11211 0 1122212 223356
Q ss_pred CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC--CCCCCC----ccccCCCccceE
Q 004770 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN--RSDVLD----PALRRPGRFDRV 497 (731)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN--~pd~LD----pALlRpGRFdr~ 497 (731)
.+++|+|||+|.+... ....+..+..... .....+.|+.+.. ..+.+. ..+.+ |+...
T Consensus 123 ~~~vliiDe~~~l~~~------------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~ 186 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE------------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIAS 186 (269)
T ss_pred CCeEEEEECcccCCHH------------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeee
Confidence 6789999999987421 1122222222211 1122233333322 112221 12443 77778
Q ss_pred EEeeCCCHHHHHHHHHHHHhcCCC----CCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHH
Q 004770 498 VMVETPDKIGREAILKVHVSKKEL----PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 498 I~v~~Pd~~eR~eILk~~l~~~~l----~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Ale 573 (731)
+++++.+.++..+++...+...+. .+.+ -.++.|.+.+.|. ++.|..+++.+...|..++...|+.+++.+++.
T Consensus 187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~-~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 187 CHLGPLDREETREYIEHRLERAGNRDAPVFSE-GAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCH-HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 899999999999999988865332 2322 2577788999985 677999999999999999999999999999986
Q ss_pred H
Q 004770 574 R 574 (731)
Q Consensus 574 r 574 (731)
.
T Consensus 265 ~ 265 (269)
T TIGR03015 265 E 265 (269)
T ss_pred H
Confidence 5
No 167
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.17 E-value=1.1e-10 Score=134.36 Aligned_cols=214 Identities=21% Similarity=0.295 Sum_probs=128.3
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~ 404 (731)
..+|+|++|..+..+++.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 3679999999998888887775432 234569999999999999999998754 679999999866432
Q ss_pred -----hhccch--------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc--CCCC-
Q 004770 405 -----YVGMGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS- 468 (731)
Q Consensus 405 -----~vG~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~- 468 (731)
..|... ..-..+|+.|. ...||||||+.|....+ ..|-.+|.+-. ....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~~Q------------~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLPLQ------------TRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHHHH------------HHHHHHHhcCcEEecCCC
Confidence 222110 01123455444 34899999999864322 12223333211 1111
Q ss_pred ---CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeeCCCHHHHHH----HHHHHHhcC----CCCCcccCCHH
Q 004770 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----ELPLAKDIDLG 530 (731)
Q Consensus 469 ---~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~~----~l~l~~dvdl~ 530 (731)
...+.+|++||..- . .+...|+|.. .+.+..|+..+|.+ ++.+++.+. +.++.++. +.
T Consensus 343 ~~~~~dvRiIaat~~~l--~-~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~ 418 (526)
T TIGR02329 343 EPVPVDVRVVAATHCAL--T-TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQ 418 (526)
T ss_pred ceeeecceEEeccCCCH--H-HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HH
Confidence 13467899988651 1 1112223321 46778888877753 444555432 22232221 22
Q ss_pred H-------HHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 004770 531 D-------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (731)
Q Consensus 531 ~-------LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (731)
. |.....--+-++|++++++++..+.......|+.+++..
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 2 555554457799999999998776432345677766543
No 168
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=4.3e-10 Score=121.50 Aligned_cols=169 Identities=17% Similarity=0.303 Sum_probs=116.2
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--------EEEeechhh
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FISCSASEF 401 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--------fi~is~se~ 401 (731)
+|+||+|++.+++.|...+. ..+.|..+||+||+|+|||++|+++|+.+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 69999999999999888763 24567789999999999999999999976432 22222100
Q ss_pred HHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 004770 402 VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (731)
. ..-+...+|++.+.+.. ....|++|||+|.+.. ...|.||..++. +..++++|.+
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEe--pp~~t~~il~ 129 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEE--PPKGVFIILL 129 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEE
Confidence 0 01123457776664432 2345999999998742 245889999884 3455666666
Q ss_pred cCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCC
Q 004770 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (731)
Q Consensus 478 TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (731)
|+.++.|.|.+++ |. ..+.+..|+.++....++..+.. +. +..++.++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND----IK-EEEKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC----CC-HHHHHHHHHHcCC
Confidence 6778999999988 43 48999999999988777665421 11 1224556666665
No 169
>PHA02244 ATPase-like protein
Probab=99.17 E-value=8.6e-10 Score=120.79 Aligned_cols=149 Identities=24% Similarity=0.315 Sum_probs=92.3
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh--h
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~--v 406 (731)
+.+.-+......+.....+..++.. +.+|||+||||||||+||+++|..++.||+.++.. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 4444444444444455554444332 34599999999999999999999999999999842 2211 1
Q ss_pred c---cchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh-----hcC-CCCCCcEEEEEE
Q 004770 407 G---MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDG-FDSNSAVIVLGA 477 (731)
Q Consensus 407 G---~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----mdg-~~~~~~VIVIaA 477 (731)
| ....-...-|-.|.. ..++|+|||++.+.+.. ...|+.++.. .++ +..+.++.+|+|
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~v------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEA------------LIIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcCCHHH------------HHHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 1 111101112333332 35699999999875332 2233444431 111 123467899999
Q ss_pred cCCC-----------CCCCccccCCCccceEEEeeCCCHH
Q 004770 478 TNRS-----------DVLDPALRRPGRFDRVVMVETPDKI 506 (731)
Q Consensus 478 TN~p-----------d~LDpALlRpGRFdr~I~v~~Pd~~ 506 (731)
+|.+ ..|++|++. ||- .|+++.|+..
T Consensus 228 sN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~~ 264 (383)
T PHA02244 228 GNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEKI 264 (383)
T ss_pred eCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcHH
Confidence 9973 578999998 995 7999999843
No 170
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=1e-10 Score=131.55 Aligned_cols=215 Identities=26% Similarity=0.370 Sum_probs=134.3
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
...+|+|++|..++..++.+.+.. .++.+..|||.|.+||||.++|++|.+.. +-||+.++|+.+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 457899999999988877776542 34566789999999999999999998865 67999999986654
Q ss_pred H-----hhcc------chHH--HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh--cCCC-
Q 004770 404 L-----YVGM------GASR--VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFD- 467 (731)
Q Consensus 404 ~-----~vG~------~~~~--vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~- 467 (731)
. .+|. ++.+ -..+|+.|... .||+|||..|...-+ .-|-..|++= ....
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~LQ------------aKLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLPLQ------------AKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHHHH------------HHHHHHHhhceEEecCC
Confidence 2 1221 1111 34566666554 899999988754322 1222333331 1111
Q ss_pred ---CCCcEEEEEEcCCCCCCCccccCCCccc-------eEEEeeCCCHHHHHH----HHHHHHhc----CC--CC-Cccc
Q 004770 468 ---SNSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE--LP-LAKD 526 (731)
Q Consensus 468 ---~~~~VIVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----ILk~~l~~----~~--l~-l~~d 526 (731)
....|.||||||+. |-.++ .-|+|- .++.+..|...+|.+ +..+++.+ .+ .+ +.++
T Consensus 375 t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 13468999999975 22222 234442 256777888888753 33333332 11 11 2222
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHH-HHH
Q 004770 527 IDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI-HAV 572 (731)
Q Consensus 527 vdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~-~Al 572 (731)
.+..|.+...--+-++|+|+++++...+. ....|+..|+. .++
T Consensus 452 -a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp~~~l 495 (560)
T COG3829 452 -ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLPAFAL 495 (560)
T ss_pred -HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcchhhh
Confidence 24444454444477999999999987553 33447766665 444
No 171
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.12 E-value=1e-10 Score=118.89 Aligned_cols=143 Identities=27% Similarity=0.396 Sum_probs=68.4
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-------------------
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------- 390 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg------------------- 390 (731)
.|+||+|++.+|..|.-... | +.++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999998876543 2 35899999999999999999998431
Q ss_pred ---------CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHH
Q 004770 391 ---------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (731)
Q Consensus 391 ---------vpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 461 (731)
.||....-+.-....+|.+....-..+..|.. .|||+||+-.+. ..+++.|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef~---------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEFD---------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS----------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhcC---------------HHHHHHHHH
Confidence 24444333222222333322111112223322 399999997652 356677777
Q ss_pred hhcCCC-----------CCCcEEEEEEcCCC-----------------------CCCCccccCCCccceEEEeeCCCHH
Q 004770 462 EMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPDKI 506 (731)
Q Consensus 462 emdg~~-----------~~~~VIVIaATN~p-----------------------d~LDpALlRpGRFdr~I~v~~Pd~~ 506 (731)
-|+.-. -..++++|+|+|.= ..|...|+. |||.++.++..+.+
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 665311 12467899998851 234555555 67766666655443
No 172
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.12 E-value=9.3e-10 Score=125.69 Aligned_cols=210 Identities=24% Similarity=0.299 Sum_probs=129.6
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC------------------
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------ 390 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg------------------ 390 (731)
..|.++.|...+++.+.- .......++|+||||+|||+|++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l--------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhe--------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 478999999887765432 123456899999999999999999987542
Q ss_pred ----------CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHH
Q 004770 391 ----------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (731)
Q Consensus 391 ----------vpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (731)
.||....-+--....+|.+...-...+..|... +|||||++.+.. .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~---------------~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER---------------RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH---------------HHHHHHH
Confidence 112111111011112333322223345555544 999999987632 2344455
Q ss_pred HhhcCCC-----------CCCcEEEEEEcCCCC---------------------CCCccccCCCccceEEEeeCCCHHH-
Q 004770 461 TEMDGFD-----------SNSAVIVLGATNRSD---------------------VLDPALRRPGRFDRVVMVETPDKIG- 507 (731)
Q Consensus 461 ~emdg~~-----------~~~~VIVIaATN~pd---------------------~LDpALlRpGRFdr~I~v~~Pd~~e- 507 (731)
+-|+.-. ...++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 4443211 135689999999742 47778888 999999999885331
Q ss_pred ---------HHHHHHHHH-------hcCCCCCcccCCHH----------------HHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 508 ---------REAILKVHV-------SKKELPLAKDIDLG----------------DIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 508 ---------R~eILk~~l-------~~~~l~l~~dvdl~----------------~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
..+|-+... ...+ .+...+.-. .-+....|.|.+....+++-|...|
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiA 472 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQN-KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIA 472 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHH-HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 111211110 0000 011111111 1122445789999999999999999
Q ss_pred HhhCCccccHHHHHHHHH
Q 004770 556 GRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 556 ~r~~~~~It~~d~~~Ale 573 (731)
..+++..|+.+|+.+|+.
T Consensus 473 DL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 473 DIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 999999999999999985
No 173
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=6.3e-10 Score=124.61 Aligned_cols=155 Identities=26% Similarity=0.425 Sum_probs=90.5
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEee----ch
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCS----AS 399 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-------pfi~is----~s 399 (731)
++++.+.++..+.+...+ . ..++++|+||||||||++|+++|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L---~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---T-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH---h-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 678888777665554433 2 2457999999999999999999998742 123332 23
Q ss_pred hhHHHhh--ccch----HHHHHHHHHHHh--cCCeEEEEcccchhhcccC-Ccccc-cchHHHHHHHHH--HHHh--hcC
Q 004770 400 EFVELYV--GMGA----SRVRDLFARAKK--EAPSIIFIDEIDAVAKSRD-GRFRI-VSNDEREQTLNQ--LLTE--MDG 465 (731)
Q Consensus 400 e~~~~~v--G~~~----~~vr~lF~~A~~--~aP~ILfIDEIDaL~~~r~-~~~~~-~~~~e~~~~Ln~--LL~e--mdg 465 (731)
+++..+. +.+. ..+.+++..|.. ..|+|||||||+.....+- +.+.. ...+.+.+.... ...+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 4443221 1111 234455566664 3589999999997543321 00000 000000000000 0011 123
Q ss_pred CCCCCcEEEEEEcCCCC----CCCccccCCCccceEEEeeC
Q 004770 466 FDSNSAVIVLGATNRSD----VLDPALRRPGRFDRVVMVET 502 (731)
Q Consensus 466 ~~~~~~VIVIaATN~pd----~LDpALlRpGRFdr~I~v~~ 502 (731)
+....++.||||+|..+ .+|.||+| ||. .|++.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55567899999999987 79999999 986 455654
No 174
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.4e-09 Score=117.85 Aligned_cols=184 Identities=15% Similarity=0.211 Sum_probs=124.0
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----------------
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------------- 393 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf---------------- 393 (731)
.|+||+|++++++.|...+.. .+.|..+||+||+|+||+++|+++|+.+.+.-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999988752 35577899999999999999999999763321
Q ss_pred --EEeech-----h-hHHHh---hc--------cchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchH
Q 004770 394 --ISCSAS-----E-FVELY---VG--------MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (731)
Q Consensus 394 --i~is~s-----e-~~~~~---vG--------~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (731)
+.+... . ....+ .| -....+|++.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 111110 0 00000 00 012345666555432 3356999999998842
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHH
Q 004770 451 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 530 (731)
Q Consensus 451 e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~ 530 (731)
...|.||..|+... +.++|..|+.++.|-|.+++ | ...+.|++|+.++..++|+....... .+.++.
T Consensus 139 ---~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--R-cq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~ 205 (314)
T PRK07399 139 ---AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--R-CQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFP 205 (314)
T ss_pred ---HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--h-ceEEecCCCCHHHHHHHHHHhhcccc----chhHHH
Confidence 34488999998544 33566677788999999998 5 35899999999999998887643211 122346
Q ss_pred HHHHhCCCCCHHHHHHHHHH
Q 004770 531 DIASMTTGFTGADLANLVNE 550 (731)
Q Consensus 531 ~LA~~t~G~SgadL~~Lv~e 550 (731)
.++....| +++...++++.
T Consensus 206 ~l~~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHHHHcCC-CHHHHHHHHHH
Confidence 77777777 66666555543
No 175
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=1.1e-09 Score=109.33 Aligned_cols=145 Identities=18% Similarity=0.266 Sum_probs=98.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------------------EEEeechhhHHHhhccchHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 417 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------------------fi~is~se~~~~~vG~~~~~vr~lF 417 (731)
.+.|..+||+||+|+|||++|+++++++... +..+.... ...+...++++.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHH
Confidence 3567789999999999999999999987432 11111100 011235666666
Q ss_pred HHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 004770 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (731)
Q Consensus 418 ~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (731)
+.+.. ....||+|||+|.+... ..+.||..|+... ...++|.+||.+..|.+++.+ |
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~~~---------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r 146 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMNEA---------------AANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--R 146 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhCHH---------------HHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--h
Confidence 66553 33569999999988532 3467888887532 345566667777999999988 5
Q ss_pred cceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCC
Q 004770 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (731)
Q Consensus 494 Fdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (731)
. ..+.+.+|+.++..++++.. + ++++ .++.++..+.|
T Consensus 147 ~-~~~~~~~~~~~~~~~~l~~~----g--i~~~-~~~~i~~~~~g 183 (188)
T TIGR00678 147 C-QVLPFPPLSEEALLQWLIRQ----G--ISEE-AAELLLALAGG 183 (188)
T ss_pred c-EEeeCCCCCHHHHHHHHHHc----C--CCHH-HHHHHHHHcCC
Confidence 4 48999999999998888775 2 2222 35556666554
No 176
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.10 E-value=2.1e-10 Score=132.54 Aligned_cols=209 Identities=23% Similarity=0.319 Sum_probs=127.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~ 402 (731)
.+..+|++++|.+...+++.+.+..+. .....|||+|++|||||++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 455789999999998888887765433 234469999999999999999999874 5799999998764
Q ss_pred HHh-----hccchHH-------HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC--CC-
Q 004770 403 ELY-----VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD- 467 (731)
Q Consensus 403 ~~~-----vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg--~~- 467 (731)
+.. .|..... ....|+.| ...+|||||||.|....+ ..|+..++. +.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ---------------AKLLRVLQEGEFER 321 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH---------------HHHHHHHhcCcEEE
Confidence 321 1211000 01113322 345999999999864322 233333321 11
Q ss_pred --C----CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeeCCCHHHH----HHHHHHHHhcC----C--CCCc
Q 004770 468 --S----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGR----EAILKVHVSKK----E--LPLA 524 (731)
Q Consensus 468 --~----~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR----~eILk~~l~~~----~--l~l~ 524 (731)
. ...+.+|++|+.. +.. +...|+|.. .+.+..|...+| ..++++++.+. + ..+.
T Consensus 322 ~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred CCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 1247889988764 111 122334421 455666666555 34555555431 1 1122
Q ss_pred ccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 004770 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (731)
Q Consensus 525 ~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (731)
++ .++.|......-+.++|+++++.|+..+ ....|+.+|+.
T Consensus 399 ~~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 399 PS-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 22 2455566664557899999999988665 34567777764
No 177
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=1.2e-09 Score=127.60 Aligned_cols=206 Identities=14% Similarity=0.158 Sum_probs=120.3
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE-eech--
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSAS-- 399 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~-is~s-- 399 (731)
.+...+.+++||+|.++..++|+.++..... +..+.+.++|+||||||||++++.+|++++..++. .+..
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 4455678899999999998888877654322 23344569999999999999999999998765433 1110
Q ss_pred -hh----------HHH--hhccchHHHHHHHHHHHh----------cCCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 400 -EF----------VEL--YVGMGASRVRDLFARAKK----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 400 -e~----------~~~--~vG~~~~~vr~lF~~A~~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
.. .+. ........+++++..+.. ....|||||||+.+... . .+.+
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----------~~~l 215 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----------TRAL 215 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----------HHHH
Confidence 00 000 001223445555555542 24569999999987522 1 1234
Q ss_pred HHHHH-hhcCCCCCCcEEEEEEcCCCC--------------CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCC
Q 004770 457 NQLLT-EMDGFDSNSAVIVLGATNRSD--------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL 521 (731)
Q Consensus 457 n~LL~-emdg~~~~~~VIVIaATN~pd--------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l 521 (731)
..+|. .... .....+|+| +|..+. .|.++++...|. .+|.|.+.......+.|+..+.....
T Consensus 216 q~lLr~~~~e-~~~~pLI~I-~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 216 HEILRWKYVS-IGRCPLVFI-ITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred HHHHHHHhhc-CCCceEEEE-ecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 44544 2111 122233333 331121 134677743343 37899999999988888888865432
Q ss_pred CCccc------CCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 522 PLAKD------IDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 522 ~l~~d------vdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
....+ -.+..|+.. +.+|++.+++.-...
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFS 327 (637)
T ss_pred ccccccccCCHHHHHHHHHh----CCChHHHHHHHHHHH
Confidence 22221 134555554 445777777655444
No 178
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.09 E-value=1.3e-10 Score=110.03 Aligned_cols=113 Identities=33% Similarity=0.388 Sum_probs=68.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--HhhccchHH------HHHHHHHHHhcCCeEEEEcccchhhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--LYVGMGASR------VRDLFARAKKEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~--~~vG~~~~~------vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (731)
+|||+||||||||+||+.+|..++.+++.++++...+ ...|.-.-. ....+.++. ..++|++||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 5899999999999999999999999999998876433 122211000 000000011 157899999998753
Q ss_pred ccCCcccccchHHHHHHHHHHHHhhcCC--------CCCC------cEEEEEEcCCCC----CCCccccCCCcc
Q 004770 439 SRDGRFRIVSNDEREQTLNQLLTEMDGF--------DSNS------AVIVLGATNRSD----VLDPALRRPGRF 494 (731)
Q Consensus 439 ~r~~~~~~~~~~e~~~~Ln~LL~emdg~--------~~~~------~VIVIaATN~pd----~LDpALlRpGRF 494 (731)
.+.-..++.++..-.-. .... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 22223334444321100 0011 489999999988 89999998 76
No 179
>PRK04132 replication factor C small subunit; Provisional
Probab=99.08 E-value=1.5e-09 Score=130.00 Aligned_cols=172 Identities=21% Similarity=0.217 Sum_probs=128.4
Q ss_pred eEEEEc--CCCCcHHHHHHHHHHhc-----CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcC------CeEEEEccc
Q 004770 367 GVLLVG--LPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEA------PSIIFIDEI 433 (731)
Q Consensus 367 gVLL~G--PPGTGKT~LAkAlA~el-----gvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~a------P~ILfIDEI 433 (731)
.-+..| |++.|||++|+++|+++ +.+++.+++++.. +...++++.+.+.... ..|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 355668 99999999999999997 5689999998752 2345676666544322 369999999
Q ss_pred chhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHH
Q 004770 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (731)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk 513 (731)
|.|... ..+.|+..|+... ..+.+|.+||.+..+.+++++ | ...+.|++|+.++..+.|+
T Consensus 640 D~Lt~~---------------AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--R-C~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 640 DALTQD---------------AQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--R-CAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ccCCHH---------------HHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--h-ceEEeCCCCCHHHHHHHHH
Confidence 998532 3477888888543 467888899999999999988 5 3589999999999999999
Q ss_pred HHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHH
Q 004770 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (731)
Q Consensus 514 ~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (731)
..+.+.++.++++ .+..++..+.| +.+...++++.++.. ...|+.+++...
T Consensus 700 ~I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 700 YIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 8887766665544 58888988888 667777777655432 134666665443
No 180
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.07 E-value=7.6e-10 Score=127.35 Aligned_cols=196 Identities=22% Similarity=0.292 Sum_probs=122.3
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~-- 404 (731)
++.+++|.....+++.+.+..+. ..+..|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 67899999999888888776433 335579999999999999999998864 579999999876432
Q ss_pred ---hhccchH-------HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC--------
Q 004770 405 ---YVGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-------- 466 (731)
Q Consensus 405 ---~vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-------- 466 (731)
..|.... .....|+.|. ...|||||||.|....+ ..|+..++.-
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ---------------AKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH---------------HHHHHHHhcCCEeeCCCC
Confidence 1221100 0112344443 45899999999863322 2333333211
Q ss_pred -CCCCcEEEEEEcCCCC-------CCCccccCCCccceEEEeeCCCHHHHHH----HHHHHHhcC----C---CCCcccC
Q 004770 467 -DSNSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSKK----E---LPLAKDI 527 (731)
Q Consensus 467 -~~~~~VIVIaATN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~~~----~---l~l~~dv 527 (731)
.....+.||++||..- .+.+.|.. |+. .+.|..|+..+|.+ ++++++.+. + ..+.++
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~- 392 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA- 392 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-
Confidence 1123678999998651 22333322 222 56778888887753 334444321 1 112222
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 004770 528 DLGDIASMTTGFTGADLANLVNEAALLAGR 557 (731)
Q Consensus 528 dl~~LA~~t~G~SgadL~~Lv~eAa~~A~r 557 (731)
.+..|.....--+.++|+++++.|+..+..
T Consensus 393 a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 393 AQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 245556666555789999999999988753
No 181
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.07 E-value=3.7e-10 Score=124.90 Aligned_cols=200 Identities=26% Similarity=0.358 Sum_probs=125.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeechhhH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFV 402 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e----lgvpfi~is~se~~ 402 (731)
....+++++|.+..-+++.+-+..+ .+....||++|++||||+++|++|... ..-||+.++|+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567999999999888777766541 233457999999999999999999753 36799999999876
Q ss_pred HHh-----hcc-------chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC-----
Q 004770 403 ELY-----VGM-------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG----- 465 (731)
Q Consensus 403 ~~~-----vG~-------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg----- 465 (731)
+.. .|. ....-..+|++|... +||+|||+.+....+ ..|+..||.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q---------------~kLl~~le~g~~~r 204 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ---------------EKLLRVLEEGEYRR 204 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCHhHH---------------HHHHHHHHcCceEe
Confidence 521 121 122234566666555 999999999864322 234444442
Q ss_pred C----CCCCcEEEEEEcCCC--CCCCc--cccCCCccceEEEeeCCCHHHHH----HH----HHHHHhcCCCCCcccC--
Q 004770 466 F----DSNSAVIVLGATNRS--DVLDP--ALRRPGRFDRVVMVETPDKIGRE----AI----LKVHVSKKELPLAKDI-- 527 (731)
Q Consensus 466 ~----~~~~~VIVIaATN~p--d~LDp--ALlRpGRFdr~I~v~~Pd~~eR~----eI----Lk~~l~~~~l~l~~dv-- 527 (731)
. .....|.+|+|||.. +.+-. .+.++ |+ .+.|..|+..+|. .+ ++.++++.+.++....
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 1 123568999999753 22222 33321 22 4566777777774 23 3444444555544333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 004770 528 DLGDIASMTTGFTGADLANLVNEAALLAGR 557 (731)
Q Consensus 528 dl~~LA~~t~G~SgadL~~Lv~eAa~~A~r 557 (731)
.+..+-....--+.++|+|+|+.++..+..
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 133333333223789999999999988753
No 182
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.07 E-value=1.7e-09 Score=126.30 Aligned_cols=192 Identities=19% Similarity=0.240 Sum_probs=125.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHhhccchHHHHHHHHHH---------HhcCCeEEEEcccc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARA---------KKEAPSIIFIDEID 434 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se~~~~~vG~~~~~vr~lF~~A---------~~~aP~ILfIDEID 434 (731)
.+|||.|+||||||++|++++..+. .||+.+......+..+|.. .+...+... ......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 3799999999999999999999875 4798887543333333331 111111100 01122499999999
Q ss_pred hhhcccCCcccccchHHHHHHHHHHHHhhcCCC-----------CCCcEEEEEEcCCCC---CCCccccCCCccceEEEe
Q 004770 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD---VLDPALRRPGRFDRVVMV 500 (731)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VIVIaATN~pd---~LDpALlRpGRFdr~I~v 500 (731)
.+... +.+.|+..|+.-. ....+.||||+|..+ .|.++|+. ||+.++.+
T Consensus 95 rl~~~---------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 95 LLDDG---------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hCCHH---------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 98533 3355555554211 124688999999765 78999998 99988877
Q ss_pred e-CCCHHHHHHHHHHHHhcC-----------------------CCCCcccCCHHHHHHh--CCCCC-HHHHHHHHHHHHH
Q 004770 501 E-TPDKIGREAILKVHVSKK-----------------------ELPLAKDIDLGDIASM--TTGFT-GADLANLVNEAAL 553 (731)
Q Consensus 501 ~-~Pd~~eR~eILk~~l~~~-----------------------~l~l~~dvdl~~LA~~--t~G~S-gadL~~Lv~eAa~ 553 (731)
. .|+.++|.+|++.++... .+.+.++ .++.++.. ..|.+ .+....+++-|..
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA 236 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKA 236 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 5 467788999998765211 1111111 12223221 22333 5666678888889
Q ss_pred HHHhhCCccccHHHHHHHHHHHhc
Q 004770 554 LAGRLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 554 ~A~r~~~~~It~~d~~~Alervi~ 577 (731)
.|..+++..|+.+|+..|+.-++.
T Consensus 237 ~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 237 HAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999988763
No 183
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.6e-09 Score=115.90 Aligned_cols=146 Identities=23% Similarity=0.314 Sum_probs=98.3
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------------------
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--------------------- 390 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg--------------------- 390 (731)
++++|.+++...+...+.. ..+.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3677788777777665432 124555799999999999999999999886
Q ss_pred ---CcEEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh
Q 004770 391 ---VPFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (731)
Q Consensus 391 ---vpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (731)
-.++.++.++-...- .....++++-+..... ...||+|||+|.+.. ...|.++..|
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~---------------~A~nallk~l 133 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE---------------DAANALLKTL 133 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHh
Confidence 355666655432210 1234455554443322 346999999999864 3448888888
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHH
Q 004770 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGRE 509 (731)
Q Consensus 464 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~ 509 (731)
+.. .....+|.+||.+..|-+.+++ | ...+.|.+|+.....
T Consensus 134 Eep--~~~~~~il~~n~~~~il~tI~S--R-c~~i~f~~~~~~~~i 174 (325)
T COG0470 134 EEP--PKNTRFILITNDPSKILPTIRS--R-CQRIRFKPPSRLEAI 174 (325)
T ss_pred ccC--CCCeEEEEEcCChhhccchhhh--c-ceeeecCCchHHHHH
Confidence 743 4566788889999999888887 4 336777775544433
No 184
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.06 E-value=7.7e-10 Score=127.61 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=122.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
...+|++++|.....+++.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 45789999999987776666554322 123459999999999999999997654 47999999987643
Q ss_pred H-----hhccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh--cCC---
Q 004770 404 L-----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGF--- 466 (731)
Q Consensus 404 ~-----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~--- 466 (731)
. ..|... .....+|+.|. ...|||||||.|....+ ..|-.++..- ...
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRMQ------------AKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHHH------------HHHHHHHhcCCcccCCCC
Confidence 2 122111 01123455443 34899999999864322 2222333321 001
Q ss_pred -CCCCcEEEEEEcCCC-------CCCCccccCCCccceEEEeeCCCHHHHHH----HHHHHHh----cCCC---CCcccC
Q 004770 467 -DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKEL---PLAKDI 527 (731)
Q Consensus 467 -~~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~----~~~l---~l~~dv 527 (731)
.....+.||++|+.+ ..+.+.|.. |+. .+.+..|+..+|.+ ++.+++. +.+. .+.++
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~- 409 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD- 409 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 112357888888764 123333433 443 47778888877752 2333332 2222 12222
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 004770 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (731)
Q Consensus 528 dl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~ 568 (731)
.++.|..+...-+-++|++++..|+..+ ....|+.+|+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 2444445444446689999988887665 2345665554
No 185
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.06 E-value=1.3e-09 Score=118.73 Aligned_cols=195 Identities=23% Similarity=0.262 Sum_probs=118.7
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~-- 404 (731)
-+++++|.+...+.+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999998888877665432 234569999999999999999998654 579999999876321
Q ss_pred ---hhccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC--CC-----
Q 004770 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD----- 467 (731)
Q Consensus 405 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg--~~----- 467 (731)
..|... ......|..|. ...|||||||.|....+ ..|+..++. +.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q---------------~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ---------------EKLLRVIEYGELERVGGS 135 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 222110 01122343333 45899999999864322 233333321 11
Q ss_pred --CCCcEEEEEEcCCC-------CCCCccccCCCccceEEEeeCCCHHHHH----HHHHHHHhc----CCCCCcccCC--
Q 004770 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KELPLAKDID-- 528 (731)
Q Consensus 468 --~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~----eILk~~l~~----~~l~l~~dvd-- 528 (731)
.+..+.||++|+.. ..+.+.|.. ||. .+.|..|+..+|. .++.+++.+ .+.+....++
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~ 212 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER 212 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 12357889888764 234455554 553 4567777777774 344454422 2222111233
Q ss_pred -HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 529 -LGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 529 -l~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
+..|.....--+-++|+++++.|+..+
T Consensus 213 al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 213 ARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 444555555557799999999887654
No 186
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.06 E-value=6.8e-10 Score=130.99 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=127.2
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE- 403 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~- 403 (731)
..+|++++|.+...+++.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999998877776654322 234459999999999999999998865 57999999986632
Q ss_pred ----Hhhccc----hHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC-----CC--
Q 004770 404 ----LYVGMG----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS-- 468 (731)
Q Consensus 404 ----~~vG~~----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----~~-- 468 (731)
...|.. .......|+.| ...+||||||+.|....+ ..|+..++.- ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q---------------~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ---------------SALLQVLKTGVITRLDSRR 452 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH---------------HHHHHHHhcCcEEeCCCCc
Confidence 222211 00001123332 345999999999864322 2333333211 11
Q ss_pred --CCcEEEEEEcCCCCCCCccccCCCccc-------eEEEeeCCCHHHHH----HHHHHHHhcC----C--CCCcccCCH
Q 004770 469 --NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGRE----AILKVHVSKK----E--LPLAKDIDL 529 (731)
Q Consensus 469 --~~~VIVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~----eILk~~l~~~----~--l~l~~dvdl 529 (731)
...+.+|+||+.. + ..+...|+|. ..+.+..|...+|. .+++.++.+. + +.+.++ .+
T Consensus 453 ~~~~~~riI~~t~~~--l-~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~ 528 (638)
T PRK11388 453 LIPVDVRVIATTTAD--L-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-AL 528 (638)
T ss_pred eEEeeEEEEEeccCC--H-HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HH
Confidence 1257899999864 1 1222223442 15778888888884 2344444321 1 122222 35
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 530 ~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
+.|......-+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 55666664557899999999887654 34467777765444
No 187
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.1e-10 Score=127.62 Aligned_cols=212 Identities=23% Similarity=0.294 Sum_probs=125.8
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----------------
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----------------- 390 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg----------------- 390 (731)
...|.||.|++.+|+.|.... ...+++|++||||||||+||+.+..-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 468999999999999987754 3456799999999999999999876431
Q ss_pred ------------CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHH
Q 004770 391 ------------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (731)
Q Consensus 391 ------------vpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (731)
.||..-.-+.-....+|.+...--.-...| .-.||||||+-.+ ..++|+.
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef---------------~~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEF---------------KRSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchh---------------hHHHHHH
Confidence 111111111001111222100000001111 1249999998544 2467777
Q ss_pred HHHhhcCCC-----------CCCcEEEEEEcCCC-----------------------CCCCccccCCCccceEEEeeCCC
Q 004770 459 LLTEMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPD 504 (731)
Q Consensus 459 LL~emdg~~-----------~~~~VIVIaATN~p-----------------------d~LDpALlRpGRFdr~I~v~~Pd 504 (731)
|.+-|+.-. -..++.+|+|+|.. ..|...|++ |||..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 777766321 12357788888852 234556666 999999999877
Q ss_pred HHHHH--------------HHHHHHH----hcCCCCCcccC----------------CHHHHHHhCCCCCHHHHHHHHHH
Q 004770 505 KIGRE--------------AILKVHV----SKKELPLAKDI----------------DLGDIASMTTGFTGADLANLVNE 550 (731)
Q Consensus 505 ~~eR~--------------eILk~~l----~~~~l~l~~dv----------------dl~~LA~~t~G~SgadL~~Lv~e 550 (731)
..++. .+++.+- +...+.....+ ++.+.+-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44431 1111110 10111001111 22223445556788888888888
Q ss_pred HHHHHHhhCCccccHHHHHHHHH
Q 004770 551 AALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 551 Aa~~A~r~~~~~It~~d~~~Ale 573 (731)
|..+|..++...|...|+.+|+.
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHh
Confidence 88888888888888888888874
No 188
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.05 E-value=7.7e-10 Score=120.62 Aligned_cols=190 Identities=22% Similarity=0.260 Sum_probs=112.9
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-----h
Q 004770 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (731)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~-----~ 405 (731)
++|...+.+++.+.+..+. .....|||+|++||||+++|++|.... +.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677777666666554432 234569999999999999999997754 579999999865321 1
Q ss_pred hccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC---------CCC
Q 004770 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSN 469 (731)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~---------~~~ 469 (731)
.|... .....+|+.|. ..+|||||||.|....+ ..|+..++.- ...
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ---------------EKLLRVIEYGEFERVGGSQTLQ 132 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH---------------HHHHHHHHcCcEEecCCCceec
Confidence 12110 00112344443 45999999999864322 2333333211 112
Q ss_pred CcEEEEEEcCCC-------CCCCccccCCCccceEEEeeCCCHHHHHH----HHHHHHhc----CCCC----CcccCCHH
Q 004770 470 SAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP----LAKDIDLG 530 (731)
Q Consensus 470 ~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~~----~~l~----l~~dvdl~ 530 (731)
.++.+|++||.. ..+.+.|.. ||. .+.|..|...+|.+ ++++++.+ .+.+ +.++ .++
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~ 208 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-ARE 208 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHH
Confidence 457899999764 123344443 443 45677788777743 44444432 1222 2222 245
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 531 DIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 531 ~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
.|......-+.++|+++++.|+..+
T Consensus 209 ~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhC
Confidence 5566664447799999999888765
No 189
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.04 E-value=2e-09 Score=128.08 Aligned_cols=196 Identities=23% Similarity=0.330 Sum_probs=121.6
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~ 404 (731)
+.+|++++|...+.+.+.+.+..+. ....+|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 3578999999999888877766433 234469999999999999999998754 579999999865321
Q ss_pred -----hhccc-------hHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC--C----
Q 004770 405 -----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F---- 466 (731)
Q Consensus 405 -----~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg--~---- 466 (731)
..|.. .......|+.|. ..+|||||||.+....+ ..|+..++. +
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~~Q---------------~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLELQ---------------PKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHHHH---------------HHHHHHHHhCCEEeCC
Confidence 22211 011123344433 45999999999854322 233333321 1
Q ss_pred ---CCCCcEEEEEEcCCCCCCCccccCCCccce-------EEEeeCCCHHHHHH----HHHHHHhc----CCCC---Ccc
Q 004770 467 ---DSNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KELP---LAK 525 (731)
Q Consensus 467 ---~~~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~----~~l~---l~~ 525 (731)
....++.+|++|+.. +. .+...|+|.. .+.|..|+..+|.+ ++++++.+ .+.+ +.+
T Consensus 504 ~~~~~~~~~RiI~~t~~~--l~-~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRD--LK-KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCCcccceEEEEEeCCCC--HH-HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 112467899999865 11 1111223321 56788888888854 34444432 1221 222
Q ss_pred cCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 526 DIDLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 526 dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
+ .++.|.....--+-++|++++++|+..+
T Consensus 581 ~-al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 581 E-TLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred H-HHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 2 3555666665557799999999998765
No 190
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.03 E-value=4.1e-09 Score=110.90 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=93.0
Q ss_pred CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC------------CCCCCccccCCC
Q 004770 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR------------SDVLDPALRRPG 492 (731)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~------------pd~LDpALlRpG 492 (731)
|.||||||+|.|- -+.-..+|.-|.. .+. + ++|.+||+ |.-||-.|+.
T Consensus 289 pGVLFIDEvHMLD------------IEcFsFlNrAlE~--d~~---P-iiimaTNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD------------IECFSFLNRALEN--DMA---P-IIIMATNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred cceEEEeeehhhh------------hHHHHHHHHHhhh--ccC---c-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--
Confidence 6788888877652 2223344444432 122 2 55556665 5667777775
Q ss_pred ccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
|. ..|...+++.++.++||+..+....+.+.++ .++.|......-|-+...+|+..|.+.|.++....++.+|+..+.
T Consensus 349 R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~-A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y 426 (454)
T KOG2680|consen 349 RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPD-ALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVY 426 (454)
T ss_pred hh-heeecccCcHHHHHHHHHhhhhhhccccCHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHH
Confidence 43 2566678899999999999998877766655 366677766666788889999999999999999999999999988
Q ss_pred HHHh
Q 004770 573 ERSI 576 (731)
Q Consensus 573 ervi 576 (731)
.-.+
T Consensus 427 ~LFl 430 (454)
T KOG2680|consen 427 RLFL 430 (454)
T ss_pred HHHh
Confidence 6544
No 191
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.03 E-value=6.2e-09 Score=119.94 Aligned_cols=206 Identities=22% Similarity=0.341 Sum_probs=131.3
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHH----hhh-------------------CCCCCCeEEEEcCCCCcHHH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKY----IRL-------------------GARPPRGVLLVGLPGTGKTL 380 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~----~~l-------------------g~~~pkgVLL~GPPGTGKT~ 380 (731)
....+-.|.|+.|-+.+-+.+...+.... +..| .++ +.+..+-+||+||||-||||
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~WD-~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQWD-PCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhhc-HHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 44556779999998887765544333211 1111 111 22334668899999999999
Q ss_pred HHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHh--------cCCeEEEEcccchhhcccCCcccccchHHH
Q 004770 381 LAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKK--------EAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (731)
Q Consensus 381 LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~--------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (731)
||+.+|+.+|..++.|++++=.. +..++.-+..|.. ..|..|+|||||--.
T Consensus 342 LAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------- 400 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------- 400 (877)
T ss_pred HHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------
Confidence 99999999999999999987432 2333433333322 468899999998421
Q ss_pred HHHHHHHHHhhc-------CCCC---------CC---cEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHH
Q 004770 453 EQTLNQLLTEMD-------GFDS---------NS---AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (731)
Q Consensus 453 ~~~Ln~LL~emd-------g~~~---------~~---~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk 513 (731)
...++.++..+. |-.. +. .--|||.||.. .-|||+----|-..+.|.+|...-..+=|+
T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHH
Confidence 122333333332 1110 00 12477888854 456764222477899999999888888888
Q ss_pred HHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 514 ~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
..+.++++..+.. .+..|+..+ ..||+..+|.-..+|...
T Consensus 479 ~IC~rE~mr~d~~-aL~~L~el~----~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 479 EICHRENMRADSK-ALNALCELT----QNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHhhhcCCCCHH-HHHHHHHHh----cchHHHHHHHHHHHHHhc
Confidence 8888877643222 344445544 559999999988887653
No 192
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=3.8e-09 Score=115.19 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=106.2
Q ss_pred ccccccC-ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE--E--Ee-echhhHH
Q 004770 330 TFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--I--SC-SASEFVE 403 (731)
Q Consensus 330 tf~DV~G-~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf--i--~i-s~se~~~ 403 (731)
.|++|+| ++.+++.|+..+. ..+.|..+||+||+|+|||++|+++|+.+.++- - .+ .|.....
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888999 8889998888764 245677899999999999999999999864321 0 00 0000000
Q ss_pred H------------hhc--cchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC
Q 004770 404 L------------YVG--MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (731)
Q Consensus 404 ~------------~vG--~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 465 (731)
. ..| -....++++.+.+.. ....|++|||+|.+.. ...|.||..|+.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------SAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------HHHHHHHHHhcC
Confidence 0 001 123456666655442 2345999999998852 345889999984
Q ss_pred CCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHH
Q 004770 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (731)
Q Consensus 466 ~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~ 514 (731)
+...+++|.+|+.+..|.|++++ | ...+++.+|+.++..++|+.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--R-c~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--R-CQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--h-ceeeeCCCCCHHHHHHHHHH
Confidence 34566777788888899999988 4 34899999999888766653
No 193
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.3e-09 Score=114.44 Aligned_cols=84 Identities=30% Similarity=0.427 Sum_probs=62.9
Q ss_pred CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--------CCCcEEEEEEc----CCCCCCCccccCCC
Q 004770 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPG 492 (731)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaAT----N~pd~LDpALlRpG 492 (731)
-.||||||||.++.+.+.+ +.+-.++.+-..||-.++|.. ....+++||+. ..|..|-|.|. |
T Consensus 251 ~GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--G 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--G 325 (444)
T ss_pred cCeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--C
Confidence 3499999999998765422 123345556677888877643 23568899886 56888889987 5
Q ss_pred ccceEEEeeCCCHHHHHHHHH
Q 004770 493 RFDRVVMVETPDKIGREAILK 513 (731)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk 513 (731)
||.-.+++...+.++-..||.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred CCceEEEcccCCHHHHHHHHc
Confidence 999999999999998887764
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-09 Score=115.87 Aligned_cols=128 Identities=33% Similarity=0.492 Sum_probs=86.0
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCC--------CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGAR--------PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE- 403 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~--------~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~- 403 (731)
=|+|++.+|+.|.=.|- .+ |.++... .-.++||.||+|+|||+||+.+|+.+++||-..++..+.+
T Consensus 62 YVIGQe~AKKvLsVAVY--NH---YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVY--NH---YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeeh--hH---HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 38899999887754332 11 2222211 1246999999999999999999999999999999988887
Q ss_pred HhhccchHHH-HHHHHHHH----hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC
Q 004770 404 LYVGMGASRV-RDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (731)
Q Consensus 404 ~~vG~~~~~v-r~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 466 (731)
.|+|+....+ ..++..|. .....||+|||||.+.++..+... .-+-.-+.+-..||..++|-
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SI-TRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSI-TRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCc-ccccCchHHHHHHHHHHcCc
Confidence 5888876554 33443332 223459999999999987643211 11111134556778888763
No 195
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.95 E-value=1.4e-09 Score=107.92 Aligned_cols=111 Identities=32% Similarity=0.359 Sum_probs=74.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCC----cEEEeechhhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcccchhh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVA 437 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgv----pfi~is~se~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~ 437 (731)
..+||+||+|||||.+|+++|..+.. +++.++++++.+. ......+..++..+. .....||||||||+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 46899999999999999999999996 9999999998761 111122222222110 1111299999999998
Q ss_pred cccCCcccccchHHHHHHHHHHHHhhcCCC---------CCCcEEEEEEcCCCC
Q 004770 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATNRSD 482 (731)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~~~~VIVIaATN~pd 482 (731)
.... ...+-....+.+.||+.||+-. .-.++++|+|+|--.
T Consensus 82 ~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 7522 2334445667788888776421 124689999999653
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=8e-09 Score=112.66 Aligned_cols=158 Identities=18% Similarity=0.275 Sum_probs=107.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------------------EEEeechhhHHHhhccchHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 417 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------------------fi~is~se~~~~~vG~~~~~vr~lF 417 (731)
.+.|..+||+||+|+|||++|+++|+.+.+. ++.+...+- -..-+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 5678899999999999999999999987542 111111000 0011345677776
Q ss_pred HHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 004770 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (731)
Q Consensus 418 ~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (731)
+.+.. ....|++|||+|.+.. ...|.||+.|+. +..++++|.+|+.++.|.|.+++ |
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--R 156 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--R 156 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--h
Confidence 66543 3355999999999853 355899999984 34678888999999999999998 5
Q ss_pred cceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHH
Q 004770 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (731)
Q Consensus 494 Fdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv 548 (731)
.. .+.|.+|+.++..+.|+..... ..+.+...++....| ++.....+.
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~G-sp~~A~~l~ 204 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGG-SPLRALQLH 204 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCC-CHHHHHHHH
Confidence 43 6899999999888888765311 112223455666666 444444443
No 197
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.92 E-value=1e-08 Score=122.68 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=90.3
Q ss_pred cccCChHhHHHHHHHHHHhcChhH-----------HhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-------CcEE
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDK-----------YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFI 394 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~-----------~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-------vpfi 394 (731)
.|.|.+.+|+.|. +..+....+ |.....+...+|||+|+||||||.+|+++++-.. .++.
T Consensus 451 ~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 5788888887663 222221111 0001234556899999999999999999998542 4555
Q ss_pred EeechhhHHHh-hccchHHH-HHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC------
Q 004770 395 SCSASEFVELY-VGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------ 466 (731)
Q Consensus 395 ~is~se~~~~~-vG~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~------ 466 (731)
.+.+..+.... ...+.-.+ ...+..| ...+++|||+|.+.... -..|+..|+.-
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~~~---------------Q~aLlEaMEqqtIsI~K 590 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHNES---------------RLSLYEVMEQQTVTIAK 590 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhhCCHHH---------------HHHHHHHHhCCEEEEec
Confidence 54444332100 00000000 0011112 23499999999985321 13344444321
Q ss_pred -----CCCCcEEEEEEcCCCC-------------CCCccccCCCccceEEE-eeCCCHHHHHHHHH
Q 004770 467 -----DSNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVVM-VETPDKIGREAILK 513 (731)
Q Consensus 467 -----~~~~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I~-v~~Pd~~eR~eILk 513 (731)
.-+.++.||||+|... .|+++|++ |||..+. ++.|+.+.-..|.+
T Consensus 591 aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 591 AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHH
Confidence 1235789999999741 47899999 9998754 46677655444433
No 198
>PRK08116 hypothetical protein; Validated
Probab=98.92 E-value=1.5e-08 Score=107.67 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhc----cchHHHHHHHHHHHhcCCeEEEEcccchh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVG----MGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (731)
.+.+++|+|+||||||+||.++|+++ +.+++.++..+++..+.. .......++++... . ..+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~-~-~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV-N-ADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc-C-CCEEEEecccCC
Confidence 35689999999999999999999985 789999999888765432 11112223333322 2 349999999642
Q ss_pred hcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC-CC----CCccccCCCcc---ceEEEeeCCCH
Q 004770 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DV----LDPALRRPGRF---DRVVMVETPDK 505 (731)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p-d~----LDpALlRpGRF---dr~I~v~~Pd~ 505 (731)
. ..+.....+..++...- ..+..+|.|||.+ +. ++..+.+ |+ ...|.+.-||.
T Consensus 191 ~----------~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 R----------DTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C----------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 12222333334444321 1233467788865 22 4556655 53 33456666664
No 199
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.91 E-value=1.6e-08 Score=110.72 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=61.7
Q ss_pred cc-cccCChHhHHHHHHHHHHhcChhHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEeec---
Q 004770 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA--- 398 (731)
Q Consensus 331 f~-DV~G~devK~~L~eiV~~Lk~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAlA~elgv-------pfi~is~--- 398 (731)
|+ |++|++++++++.+ +++... .|. ...+.++|+||||+|||+||++||+.++. |++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~---~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVN---YFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHH---HHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 56 89999999776554 444322 122 33577899999999999999999999977 9999988
Q ss_pred -hhhHHHhhccchHHHHHHHHHH
Q 004770 399 -SEFVELYVGMGASRVRDLFARA 420 (731)
Q Consensus 399 -se~~~~~vG~~~~~vr~lF~~A 420 (731)
+.+.+..++.....+|+.|.+.
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHH
Confidence 7777766666666666666443
No 200
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.89 E-value=1.2e-08 Score=114.83 Aligned_cols=206 Identities=24% Similarity=0.340 Sum_probs=128.8
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~ 404 (731)
...+.+++|...+.++|.+.+..+.. ..-.|||+|++||||-++|++|.+.. +.||+.++|..+-..
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAP----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 34577999999999999998876543 23469999999999999999998865 569999999865432
Q ss_pred -----hhccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc-----CCC
Q 004770 405 -----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GFD 467 (731)
Q Consensus 405 -----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-----g~~ 467 (731)
.+|... .+-...|+.|... .||||||..+.-.-+ ..||..+. ...
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~~Q---------------~kLLRvLqe~~~~rvG 268 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLELQ---------------VKLLRVLQEREFERVG 268 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHHHH---------------HHHHHHHHcCeeEecC
Confidence 223211 1112345555444 999999988753322 23333332 121
Q ss_pred C----CCcEEEEEEcCCCCCCCccccCCCccc-------eEEEeeCCCHHHHHH----HHHHHHh----cCCCCCcccCC
Q 004770 468 S----NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVS----KKELPLAKDID 528 (731)
Q Consensus 468 ~----~~~VIVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----ILk~~l~----~~~l~l~~dvd 528 (731)
. +..|.||+|||.. |...+ ..|+|- .++.+..|...+|.+ +++++++ ..+. -...++
T Consensus 269 ~~~~i~vdvRiIaaT~~d--L~~~v-~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~-~~~~~s 344 (464)
T COG2204 269 GNKPIKVDVRIIAATNRD--LEEEV-AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR-PPKGFS 344 (464)
T ss_pred CCcccceeeEEEeecCcC--HHHHH-HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCC-CCCCCC
Confidence 1 3468999999975 22222 224442 377888999888863 3444443 2222 123444
Q ss_pred HHHHH---HhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 004770 529 LGDIA---SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (731)
Q Consensus 529 l~~LA---~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~ 568 (731)
-+.++ .+..--+-++|+|+++.++..+. ...|+.+++
T Consensus 345 ~~a~~~L~~y~WPGNVREL~N~ver~~il~~---~~~i~~~~l 384 (464)
T COG2204 345 PEALAALLAYDWPGNVRELENVVERAVILSE---GPEIEVEDL 384 (464)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHhcCC---ccccchhhc
Confidence 44443 33322355888888888877663 344555444
No 201
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.89 E-value=4.2e-09 Score=107.66 Aligned_cols=201 Identities=21% Similarity=0.255 Sum_probs=121.8
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-C----CcEEEee
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-E----VPFISCS 397 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-g----vpfi~is 397 (731)
.+...++.+.|++|.++..++|+-+... ...| +++|.||||||||+-+.++|+++ | --+..++
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~-----------gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKE-----------GNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHc-----------CCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 4566778899999999999998877642 2333 59999999999999999999986 3 1344555
Q ss_pred chhhHHHhhccchHHHH---HHHHHHHhcC----CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCC
Q 004770 398 ASEFVELYVGMGASRVR---DLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (731)
Q Consensus 398 ~se~~~~~vG~~~~~vr---~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 470 (731)
+++-. +..-+| ..|.+-+-.- ..||++||.|++....+ ..|-..|+-+...
T Consensus 86 ASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ---------------QAlRRtMEiyS~t- 143 (333)
T KOG0991|consen 86 ASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ---------------QALRRTMEIYSNT- 143 (333)
T ss_pred Ccccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH---------------HHHHHHHHHHccc-
Confidence 55421 222233 3455544332 24999999999863321 2233334433332
Q ss_pred cEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHH
Q 004770 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (731)
Q Consensus 471 ~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~e 550 (731)
..+..++|..+.|-+.+.+++- .+.+...+..+...-|....+.++++..++ -++.+.....| |+++.+|.
T Consensus 144 -tRFalaCN~s~KIiEPIQSRCA---iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 144 -TRFALACNQSEKIIEPIQSRCA---ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred -chhhhhhcchhhhhhhHHhhhH---hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhccc----hHHHHHHH
Confidence 3566688888888777776322 344445555555444444455555555444 35555554444 77777765
Q ss_pred HHHHHHhhCCccccHHHH
Q 004770 551 AALLAGRLNKVVVEKIDF 568 (731)
Q Consensus 551 Aa~~A~r~~~~~It~~d~ 568 (731)
-. +...+-..|+.+.+
T Consensus 215 LQ--st~~g~g~Vn~enV 230 (333)
T KOG0991|consen 215 LQ--STVNGFGLVNQENV 230 (333)
T ss_pred HH--HHhccccccchhhh
Confidence 43 22334445555444
No 202
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-08 Score=113.39 Aligned_cols=144 Identities=25% Similarity=0.399 Sum_probs=102.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe-echhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i-s~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (731)
.+-..+||.||||+|||.||-.+|...+.||+.+ +..+++..-....-..++..|+.|.+..-+||++|+|+.|..-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-- 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-- 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--
Confidence 4456799999999999999999999999999976 4444433222222346889999999988899999999998632
Q ss_pred CcccccchHHHHHHHHHHHHhhcCCCCCC-cEEEEEEcCCCCCCCc-cccCCCccceEEEeeCCCH-HHHHHHHH
Q 004770 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLDP-ALRRPGRFDRVVMVETPDK-IGREAILK 513 (731)
Q Consensus 442 ~~~~~~~~~e~~~~Ln~LL~emdg~~~~~-~VIVIaATN~pd~LDp-ALlRpGRFdr~I~v~~Pd~-~eR~eILk 513 (731)
...+....+-++..|+..+....+.. +.+|++||.+.+.|.. .++. .|+..+.+|.... ++..+++.
T Consensus 614 ---vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 614 ---VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred ---cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 22344556778888888887666543 5788888877655432 2333 6888888876654 44444443
No 203
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.85 E-value=6.6e-09 Score=116.03 Aligned_cols=200 Identities=27% Similarity=0.378 Sum_probs=126.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
+...+.+++|...+..++.+.|+.... ....|||.|.+||||-.+||+|.... ..||+.++|+.+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAK----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhc----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 367888999999999999988876543 34579999999999999999998865 67999999987765
Q ss_pred Hh-----hccchHH-------HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh--hcCCCC-
Q 004770 404 LY-----VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFDS- 468 (731)
Q Consensus 404 ~~-----vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--mdg~~~- 468 (731)
.. +|.-... -+.-|+.|.. ..||+|||..|.-.-+. -|-..|++ ++....
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~lQa------------KLLRvLQegEieRvG~~ 352 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLALQA------------KLLRVLQEGEIERVGGD 352 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHHHHH------------HHHHHHhhcceeecCCC
Confidence 32 2221111 1122444433 38999999887543321 12222322 232222
Q ss_pred ---CCcEEEEEEcCCCCCCCccccCCCccc-------eEEEeeCCCHHHHHH----HHHHHHhc----CC---CCCcccC
Q 004770 469 ---NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDI 527 (731)
Q Consensus 469 ---~~~VIVIaATN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----ILk~~l~~----~~---l~l~~dv 527 (731)
+-.|.||||||+. |..++. .|+|- .++.+..|...+|.+ +.++++.+ .+ +.++++
T Consensus 353 r~ikVDVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~- 428 (550)
T COG3604 353 RTIKVDVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE- 428 (550)
T ss_pred ceeEEEEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH-
Confidence 2358999999974 333332 34552 256667788888752 22333322 12 122222
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 528 DLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 528 dl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
.++.|.....--+-++|++++++|+..|
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 2455555554446799999999999988
No 204
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.81 E-value=1.4e-08 Score=114.44 Aligned_cols=207 Identities=19% Similarity=0.259 Sum_probs=119.9
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV 406 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v 406 (731)
.+.+++|.....+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888887777766554322 233569999999999999999998765 57999999987643211
Q ss_pred -----ccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh--cCCC----C
Q 004770 407 -----GMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFD----S 468 (731)
Q Consensus 407 -----G~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~----~ 468 (731)
|... ......|..| ...+|||||||.|....+ ..+-.++..- .... .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q------------~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ------------AKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH------------HHHHHHHhhCeEEeCCCCcee
Confidence 1100 0011112222 345999999999864322 1222233221 0001 1
Q ss_pred CCcEEEEEEcCCC-------CCCCccccCCCccceEEEeeCCCHHHHHH----HHHHHHhcC----CC---CCcccCCHH
Q 004770 469 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSKK----EL---PLAKDIDLG 530 (731)
Q Consensus 469 ~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----ILk~~l~~~----~l---~l~~dvdl~ 530 (731)
...+.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|.+ ++++++.+. +. .+.++ .+.
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD-ALR 347 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH-HHH
Confidence 2357888888765 223333332 332 46777888888764 444444321 11 12222 355
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 004770 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (731)
Q Consensus 531 ~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~ 568 (731)
.|......-+.++|+++++.|+..+. ...|+.+++
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 55666655577999999999886652 345555443
No 205
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.80 E-value=8.8e-09 Score=102.05 Aligned_cols=134 Identities=28% Similarity=0.435 Sum_probs=79.4
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-----h
Q 004770 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (731)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~-----~ 405 (731)
++|.+...+++.+.+..+. ..+..|||+|++||||+++|++|.+.. +.||+.++|+.+.+. .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4677777777766654332 344679999999999999999999865 579999999876432 3
Q ss_pred hccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc--CCCC----CCcE
Q 004770 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS----NSAV 472 (731)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~----~~~V 472 (731)
.|... ..-..+|++|... +||||||+.|...-+ ..|.++|..-. .... ...+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ------------AKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH------------HHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHHHH------------HHHHHHHhhchhccccccccccccc
Confidence 33311 1123577777665 999999999864322 22333343211 1111 2468
Q ss_pred EEEEEcCCCCCCCccccCCCccc
Q 004770 473 IVLGATNRSDVLDPALRRPGRFD 495 (731)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFd 495 (731)
.||++|+.+ |...+ ..|+|.
T Consensus 136 RiI~st~~~--l~~~v-~~g~fr 155 (168)
T PF00158_consen 136 RIIASTSKD--LEELV-EQGRFR 155 (168)
T ss_dssp EEEEEESS---HHHHH-HTTSS-
T ss_pred eEEeecCcC--HHHHH-HcCCCh
Confidence 999999864 33333 335653
No 206
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.77 E-value=7e-08 Score=113.32 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=64.1
Q ss_pred cEEEEEEcCCC--CCCCccccCCCccc---eEEEeeC--CC-HHHHHHHHHHHHhcCCCC-CcccCCHH---HHHH---h
Q 004770 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--PD-KIGREAILKVHVSKKELP-LAKDIDLG---DIAS---M 535 (731)
Q Consensus 471 ~VIVIaATN~p--d~LDpALlRpGRFd---r~I~v~~--Pd-~~eR~eILk~~l~~~~l~-l~~dvdl~---~LA~---~ 535 (731)
.+.||+++|+. ..+||+|.. ||. ..+.++. ++ .+.+..+++...+..... ....++-+ .|.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57889999875 567899987 764 3444432 22 455556665443321110 01123322 2221 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 536 TTG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 536 t~G------~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
..| ...++|.+++++|...|..+++..++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 236899999999999999999999999999998864
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=4.7e-08 Score=107.09 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE---EeechhhHH-----------H-hh--------------------
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSASEFVE-----------L-YV-------------------- 406 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi---~is~se~~~-----------~-~v-------------------- 406 (731)
.+.|.++||+||+|+||+++|+++|+.+.+.-- .-.|..... . ++
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 478899999999999999999999998754220 001111100 0 00
Q ss_pred -------------ccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCC
Q 004770 407 -------------GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (731)
Q Consensus 407 -------------G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~ 469 (731)
.-....+|++.+.+.. ..-.|++||++|.+.. ..-|.||+.++ ++.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp 160 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLE--EPP 160 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhc--CCC
Confidence 0123566776665432 2234999999999852 34589999998 566
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHH
Q 004770 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (731)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~ 515 (731)
.++++|.+|+.++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 788999999999999999998 54 58999999999888777653
No 208
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.77 E-value=3.4e-08 Score=112.12 Aligned_cols=208 Identities=21% Similarity=0.266 Sum_probs=125.1
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~-- 404 (731)
.+.+++|.....+.+.+.+..+. .....+||+|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 35689998887777766554322 234569999999999999999998875 579999999876332
Q ss_pred ---hhccchH------H-HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC-----C--
Q 004770 405 ---YVGMGAS------R-VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D-- 467 (731)
Q Consensus 405 ---~vG~~~~------~-vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----~-- 467 (731)
..|.... . ....|+.| ....|||||||.|....+ ..|+..++.- .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ---------------TRLLRVLADGQFYRVGGY 267 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 1121100 0 01112222 245899999999864322 2333333211 1
Q ss_pred --CCCcEEEEEEcCCC-------CCCCccccCCCccceEEEeeCCCHHHHH----HHHHHHHhc----CCCC---CcccC
Q 004770 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KELP---LAKDI 527 (731)
Q Consensus 468 --~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~----eILk~~l~~----~~l~---l~~dv 527 (731)
....+.+|+||+.. ..+.+.|.. ||. .+.+..|...+|. .++.+++.+ .+.+ +.++
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 343 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE- 343 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 12357888888764 133444444 443 4667777766664 355555533 1111 2222
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 528 dl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
.+..|..+...-+.++|+++++.|+..+. ...|+.+|+...+
T Consensus 344 a~~~L~~~~wpgNv~eL~~~i~~~~~~~~---~~~i~~~~l~~~~ 385 (469)
T PRK10923 344 TEAALTRLAWPGNVRQLENTCRWLTVMAA---GQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHCcHhh
Confidence 35556666655577999999999887653 4567777765433
No 209
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.76 E-value=3.2e-08 Score=97.32 Aligned_cols=133 Identities=24% Similarity=0.373 Sum_probs=86.4
Q ss_pred CChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------------------
Q 004770 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------------------- 392 (731)
Q Consensus 336 G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp----------------------- 392 (731)
|++++++.|.+.+. ..+.|..+||+||+|+||+++|+++|+.+...
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 67888888887764 24567789999999999999999999976321
Q ss_pred EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC
Q 004770 393 FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (731)
Q Consensus 393 fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~ 468 (731)
++.++..+.. ..-..+.++++.+.+.. ....|++|||+|.+.. ...|.||..|+. +
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEe--p 129 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEE--P 129 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHS--T
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcC--C
Confidence 2222211100 01134566666665532 2356999999999853 355899999994 4
Q ss_pred CCcEEEEEEcCCCCCCCccccCCCccceEEEeeC
Q 004770 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (731)
Q Consensus 469 ~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (731)
..++++|.+|+.++.|.|.+++ |. ..+.+++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 4678888899999999999998 53 3555554
No 210
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.76 E-value=1.2e-07 Score=109.36 Aligned_cols=222 Identities=18% Similarity=0.284 Sum_probs=140.7
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeechhhH
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFV 402 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is~se~~ 402 (731)
.|.+.+....++..+++..-..+ .....+.+.|-||||||.++..+-.++ ..+|+.|++-.+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 35556666666665554433221 123368899999999999999998865 3567888876554
Q ss_pred H---Hhh-------cc------chHHHHHHHHHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC
Q 004770 403 E---LYV-------GM------GASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (731)
Q Consensus 403 ~---~~v-------G~------~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 465 (731)
+ .|. |. +...+..-|...+ ...+|||+|||+|.|....+ .++..++..--
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt- 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT- 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc-
Confidence 3 221 21 1122333333221 34588999999999986543 34555555432
Q ss_pred CCCCCcEEEEEEcCCCCCCCccccC---CCccc-eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCH
Q 004770 466 FDSNSAVIVLGATNRSDVLDPALRR---PGRFD-RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (731)
Q Consensus 466 ~~~~~~VIVIaATN~pd~LDpALlR---pGRFd-r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (731)
..+++++||+..|..+ |+..++- ..|++ +.+.|.+++..+.++|+...+.... .+..+ ..+-+|+.-...||
T Consensus 537 -~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~-aielvarkVAavSG 612 (767)
T KOG1514|consen 537 -LKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENK-AIELVARKVAAVSG 612 (767)
T ss_pred -CCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchh-HHHHHHHHHHhccc
Confidence 3457888888888754 2322221 12443 4689999999999999999886531 12222 23444554444444
Q ss_pred --HHHHHHHHHHHHHHHhhCC-------ccccHHHHHHHHHHHhcc
Q 004770 542 --ADLANLVNEAALLAGRLNK-------VVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 542 --adL~~Lv~eAa~~A~r~~~-------~~It~~d~~~Alervi~g 578 (731)
+-...+|++|+..|..+.. ..|++.|+.+|+...+..
T Consensus 613 DaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 613 DARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 5566889999999877655 568899999999886654
No 211
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=2.4e-07 Score=102.92 Aligned_cols=225 Identities=18% Similarity=0.202 Sum_probs=144.2
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhHH----
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE---- 403 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se~~~---- 403 (731)
.+.|.+..+..+++++.. .+....+..+.+.|-||||||.+...+.... ....++++|..+.+
T Consensus 151 ~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 577888888877776643 2234567789999999999999888776544 23447788765322
Q ss_pred ------Hh----hccc-hHHHHHHHHHHHh-c-CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCC
Q 004770 404 ------LY----VGMG-ASRVRDLFARAKK-E-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (731)
Q Consensus 404 ------~~----vG~~-~~~vr~lF~~A~~-~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 470 (731)
.+ .+.+ .......|..... . .+-|+++||+|.|+...+. ++..+.. .+. -+++
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lFe-wp~-lp~s 288 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLFE-WPK-LPNS 288 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeehh-ccc-CCcc
Confidence 11 1111 1233344444332 2 3679999999999855432 2222222 222 2357
Q ss_pred cEEEEEEcCCCCCCCccccC----CCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCH--HHH
Q 004770 471 AVIVLGATNRSDVLDPALRR----PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--ADL 544 (731)
Q Consensus 471 ~VIVIaATN~pd~LDpALlR----pGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg--adL 544 (731)
++++|+.+|..|.=|..|.| .+--...+.|++++.++..+||+..+.........+..++..|+...+.|| +.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 89999999988766655532 222356889999999999999999997643322223346677888888776 455
Q ss_pred HHHHHHHHHHHHhhCCc----------------cccHHHHHHHHHHHhccc
Q 004770 545 ANLVNEAALLAGRLNKV----------------VVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 545 ~~Lv~eAa~~A~r~~~~----------------~It~~d~~~Alervi~g~ 579 (731)
-.+|+.|..+|..+.+. .|-.+++..++.++....
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 56777787777665432 244666666666655443
No 212
>PRK12377 putative replication protein; Provisional
Probab=98.74 E-value=8.3e-08 Score=100.85 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccc--hHHHHHHHHHHHhcCCeEEEEcccchhhcc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (731)
..+++|+||||||||+||.|+|+++ +..++.++..++.......- .....++++.. ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 4689999999999999999999987 67888888888877432210 01112333332 345599999997642
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
.++.....+.+++..-- . ...-+|.|||..
T Consensus 177 --------~s~~~~~~l~~ii~~R~--~--~~~ptiitSNl~ 206 (248)
T PRK12377 177 --------ETKNEQVVLNQIIDRRT--A--SMRSVGMLTNLN 206 (248)
T ss_pred --------CCHHHHHHHHHHHHHHH--h--cCCCEEEEcCCC
Confidence 12233455666665432 1 122355678864
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=2.4e-07 Score=100.87 Aligned_cols=134 Identities=16% Similarity=0.240 Sum_probs=94.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE--EEeechhh---H-------------HHhhc--cchHHHHHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--ISCSASEF---V-------------ELYVG--MGASRVRDLFARAK 421 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf--i~is~se~---~-------------~~~vG--~~~~~vr~lF~~A~ 421 (731)
.+.|..+||+||+|+||+++|+++|+.+.+.- -.-.|... . ....| -+...+|++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 46778899999999999999999999764311 00011110 0 00001 23556777666554
Q ss_pred h----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceE
Q 004770 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (731)
Q Consensus 422 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~ 497 (731)
. ..-.|++||++|.+.. ..-|.||+.++ ++..++++|.+|+.++.|.|.+++ | ...
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--R-C~~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--R-CQT 160 (325)
T ss_pred hccccCCceEEEEechhhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--h-ceE
Confidence 3 2345999999999852 34589999998 455678888899999999999988 4 348
Q ss_pred EEeeCCCHHHHHHHHHHH
Q 004770 498 VMVETPDKIGREAILKVH 515 (731)
Q Consensus 498 I~v~~Pd~~eR~eILk~~ 515 (731)
+.+.+|+.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999999888777764
No 214
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.72 E-value=7.2e-08 Score=108.83 Aligned_cols=206 Identities=20% Similarity=0.308 Sum_probs=120.0
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh-
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~- 405 (731)
.+.+++|.......+.+.+..+. .....+|++|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45568887776665555443322 233469999999999999999997764 5799999998764321
Q ss_pred ----hccchHH-------HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC--C---CC-
Q 004770 406 ----VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F---DS- 468 (731)
Q Consensus 406 ----vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg--~---~~- 468 (731)
.|..... ....|..| ...+|||||||.+....+ ..|+..++. + ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVLQ---------------AKLLRILQEREFERIGGH 272 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 1211000 01122222 235999999999864322 233333321 1 11
Q ss_pred ---CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeeCCCHHHHHH----HHHHHHhcC----CC---CCcccC
Q 004770 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----EL---PLAKDI 527 (731)
Q Consensus 469 ---~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----ILk~~l~~~----~l---~l~~dv 527 (731)
..++.+|++||.. + ..+.+.|+|.. .+.+..|+..+|.+ ++..++.+. +. .+.++
T Consensus 273 ~~~~~~~rii~~t~~~--l-~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~- 348 (457)
T PRK11361 273 QTIKVDIRIIAATNRD--L-QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM- 348 (457)
T ss_pred ceeeeceEEEEeCCCC--H-HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 2357899999864 1 12233344432 56778888887753 334444321 11 12221
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 004770 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (731)
Q Consensus 528 dl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (731)
.++.|......-+.++|++++++|+..+ ....|+.+|+..
T Consensus 349 a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~ 388 (457)
T PRK11361 349 AMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPP 388 (457)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChH
Confidence 2455556555557899999999988654 344677766643
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.71 E-value=1.2e-07 Score=99.50 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=79.7
Q ss_pred CCcccccccCC-hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 004770 327 DTITFADVAGV-DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (731)
Q Consensus 327 ~~vtf~DV~G~-devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~ 402 (731)
..-+|++..-. +..+..+..+..+.++. . ....+++|+|+||||||+|+.++|.++ +..++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 45577776532 33333334443333221 1 123489999999999999999999987 7889999999888
Q ss_pred HHhhcc---chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 403 ELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 403 ~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
..+... ......++++... .+.+|+|||++... ..+.....+.+++..-- . ..-.+|.+||
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~Ry--~--~~~~tiitSN 203 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRRS--S--SKRPTGMLTN 203 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHHH--h--CCCCEEEeCC
Confidence 654321 1112233444332 46699999998753 12334456666666422 1 1224566888
Q ss_pred CC
Q 004770 480 RS 481 (731)
Q Consensus 480 ~p 481 (731)
..
T Consensus 204 l~ 205 (244)
T PRK07952 204 SN 205 (244)
T ss_pred CC
Confidence 64
No 216
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.5e-08 Score=107.55 Aligned_cols=97 Identities=36% Similarity=0.618 Sum_probs=69.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-HhhccchH-HHHHHHHHHH----hcCCeEEEEcccchhhcc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGAS-RVRDLFARAK----KEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~-~~vG~~~~-~vr~lF~~A~----~~aP~ILfIDEIDaL~~~ 439 (731)
.+|||.||+|+|||+||+.+|+-+++||..++|..+.. .|+|+..+ -+..++..|. +....||||||+|++..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 36999999999999999999999999999999998875 58887644 4455655543 233559999999999855
Q ss_pred cCCcc--cccchHHHHHHHHHHHHhhcC
Q 004770 440 RDGRF--RIVSNDEREQTLNQLLTEMDG 465 (731)
Q Consensus 440 r~~~~--~~~~~~e~~~~Ln~LL~emdg 465 (731)
..+-. ...+. +.+-..||..++|
T Consensus 307 ~~~i~~~RDVsG---EGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSG---EGVQQALLKLLEG 331 (564)
T ss_pred Cccccccccccc---hhHHHHHHHHhcc
Confidence 43210 11111 3344566666665
No 217
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.70 E-value=9.8e-08 Score=96.32 Aligned_cols=184 Identities=28% Similarity=0.354 Sum_probs=93.2
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC---cEEEeec-hhhH----HHh-
Q 004770 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSA-SEFV----ELY- 405 (731)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv---pfi~is~-se~~----~~~- 405 (731)
+|.++..+.|.+++.. .....++|+||+|+|||+|++.+...+.- ..+++.. .... ..+
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4566655555554421 23457999999999999999999998832 1111211 1000 000
Q ss_pred ------------h-----------------ccchHHHHHHHHHHHhc-CCeEEEEcccchhh-cccCCcccccchHHHHH
Q 004770 406 ------------V-----------------GMGASRVRDLFARAKKE-APSIIFIDEIDAVA-KSRDGRFRIVSNDEREQ 454 (731)
Q Consensus 406 ------------v-----------------G~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~ 454 (731)
. ......+..+++..... ...||+|||+|.+. .... ...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----------~~~ 139 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----------DKD 139 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----------THH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----------hHH
Confidence 0 11234456666665543 34799999999997 2211 123
Q ss_pred HHHHHHHhhcCCCCCCcE-EEEEEcCCC---C--CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCC-cccC
Q 004770 455 TLNQLLTEMDGFDSNSAV-IVLGATNRS---D--VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL-AKDI 527 (731)
Q Consensus 455 ~Ln~LL~emdg~~~~~~V-IVIaATN~p---d--~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l-~~dv 527 (731)
.+..|...++......++ +|+++++.. + .-...+. +|+.. +.+++.+.++..++++..+... ..+ .++.
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~ 215 (234)
T PF01637_consen 140 FLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDE 215 (234)
T ss_dssp HHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HH
T ss_pred HHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHH
Confidence 344444444443333444 444444321 1 1122233 47776 9999999999999999987654 333 2344
Q ss_pred CHHHHHHhCCCCCHHHHH
Q 004770 528 DLGDIASMTTGFTGADLA 545 (731)
Q Consensus 528 dl~~LA~~t~G~SgadL~ 545 (731)
+++.+...+.| .|+.|.
T Consensus 216 ~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 216 DIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHhCC-CHHHHh
Confidence 67778888877 466554
No 218
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.68 E-value=1.6e-07 Score=101.64 Aligned_cols=102 Identities=24% Similarity=0.313 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEcccchhhcc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (731)
..+|++|+||+|||||+||.|+|+++ |.++..+..++|+..+... ....+.+.++... ...+|+||||.+-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 46899999999999999999999987 7888888888887643221 1112333444332 34599999996532
Q ss_pred cCCcccccchHHHHHHHHHHHHh-hcCCCCCCcEEEEEEcCCC
Q 004770 440 RDGRFRIVSNDEREQTLNQLLTE-MDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~e-mdg~~~~~~VIVIaATN~p 481 (731)
.....+..++..++.. +. .+..+|.|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 1222233455555543 22 223566788865
No 219
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=3.7e-07 Score=99.93 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=103.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechhhH---H-----------Hhh-----ccchHHHHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFV---E-----------LYV-----GMGASRVRDLFARA 420 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--fi~is~se~~---~-----------~~v-----G~~~~~vr~lF~~A 420 (731)
.+.|..+||+||+|+||+++|.++|..+-+. --.-.|.... . ... .-+...+|++-+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 5678889999999999999999999976431 0000111110 0 000 11345677766655
Q ss_pred Hh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccce
Q 004770 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (731)
Q Consensus 421 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 496 (731)
.. ..-.|++||++|++.. +.-|.||+.|+ ++..++++|..|+.++.|.|.+++ |-.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred hhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 42 3345999999999852 34599999998 455678888899999999999998 533
Q ss_pred EEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHH
Q 004770 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (731)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~L 547 (731)
.+.+++|+.++..+.|.... + .+.+ ....+++.+.| ++.....+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~--~~~~-~a~~~~~la~G-~~~~Al~l 204 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV---T--MSQD-ALLAALRLSAG-APGAALAL 204 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc---C--CCHH-HHHHHHHHcCC-CHHHHHHH
Confidence 68999999888777665421 1 1221 23455666666 44333333
No 220
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.63 E-value=2.9e-07 Score=101.72 Aligned_cols=160 Identities=25% Similarity=0.389 Sum_probs=100.9
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEe----
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC---- 396 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------gvpfi~i---- 396 (731)
...|.-++|+|..|..|--- --+|+ -.|+||-|+.|||||+++||||.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46788899999988866331 11222 2579999999999999999999966 3332110
Q ss_pred --echhhHHH-------------------hhccchHHH------HHHHH----------HHHhcCCeEEEEcccchhhcc
Q 004770 397 --SASEFVEL-------------------YVGMGASRV------RDLFA----------RAKKEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 397 --s~se~~~~-------------------~vG~~~~~v------r~lF~----------~A~~~aP~ILfIDEIDaL~~~ 439 (731)
.|.++..+ -.+.++.++ ....+ .|+. +-.|++|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEecccccc--
Confidence 11111111 122223321 11111 1111 23499999997763
Q ss_pred cCCcccccchHHHHHHHHHHHHhhc---------CC--CCCCcEEEEEEcCCC-CCCCccccCCCccceEEEeeCC-CHH
Q 004770 440 RDGRFRIVSNDEREQTLNQLLTEMD---------GF--DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP-DKI 506 (731)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emd---------g~--~~~~~VIVIaATN~p-d~LDpALlRpGRFdr~I~v~~P-d~~ 506 (731)
.++.+.||..+. |+ .-..++++|+|+|.- ..|-|.|+. ||...+.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 235566665543 22 223578999999975 478888888 99999998765 578
Q ss_pred HHHHHHHHHHh
Q 004770 507 GREAILKVHVS 517 (731)
Q Consensus 507 eR~eILk~~l~ 517 (731)
+|.+|++..+.
T Consensus 223 ~rv~Ii~r~~~ 233 (423)
T COG1239 223 ERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 221
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.63 E-value=9.9e-09 Score=97.01 Aligned_cols=111 Identities=28% Similarity=0.380 Sum_probs=57.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech-hhH-HHhhccchHHHH-HHHHHHHh-cCCeEEEEcccchhhcccCC
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFV-ELYVGMGASRVR-DLFARAKK-EAPSIIFIDEIDAVAKSRDG 442 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s-e~~-~~~vG~~~~~vr-~lF~~A~~-~aP~ILfIDEIDaL~~~r~~ 442 (731)
+|||.|+||+|||++|+++|+.++..|..|.+. ++. +...|...-... ..|+-.+. --..|+++|||.+..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappk--- 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPK--- 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HH---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHH---
Confidence 589999999999999999999999999988774 333 222222100000 00000000 00139999999876533
Q ss_pred cccccchHHHHHHHHHHHHhhcC---------CCCCCcEEEEEEcCCCC-----CCCccccCCCcc
Q 004770 443 RFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRSD-----VLDPALRRPGRF 494 (731)
Q Consensus 443 ~~~~~~~~e~~~~Ln~LL~emdg---------~~~~~~VIVIaATN~pd-----~LDpALlRpGRF 494 (731)
+.+.||+.|.. +.-..+++||||-|..+ .|++|++. ||
T Consensus 78 ------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 78 ------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 33556665542 22235689999999875 67888876 66
No 222
>PRK08181 transposase; Validated
Probab=98.62 E-value=2.7e-07 Score=98.08 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEcccchhhccc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (731)
..+++|+||||||||+||.+++.++ |..+++++..+++..+... ......+.++.. ..+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC--
Confidence 4579999999999999999999754 7888889998888765321 112233344433 2456999999987642
Q ss_pred CCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 441 ~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
++.....+.+++..... +. -+|.|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 22334455566654432 12 356678765
No 223
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.60 E-value=1.7e-07 Score=105.99 Aligned_cols=210 Identities=20% Similarity=0.269 Sum_probs=119.2
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh--
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY-- 405 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~-- 405 (731)
+.+++|......++.+.+..+. .....+++.|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3468888877776665554322 234469999999999999999998764 5799999998763321
Q ss_pred ---hccchHH-------HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc--CCC----CC
Q 004770 406 ---VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----SN 469 (731)
Q Consensus 406 ---vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~----~~ 469 (731)
.|..... ....|. ....+.|||||||.|.... ...+..++.+-. ... ..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~~~~------------q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMPLDA------------QTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCCHHH------------HHHHHHHHhcCcEEECCCCceee
Confidence 1211000 001122 2235699999999985432 122333333211 001 12
Q ss_pred CcEEEEEEcCCC-------CCCCccccCCCccceEEEeeCCCHHHH----HHHHHHHHhcC----CC---CCcccCCHHH
Q 004770 470 SAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVSKK----EL---PLAKDIDLGD 531 (731)
Q Consensus 470 ~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR----~eILk~~l~~~----~l---~l~~dvdl~~ 531 (731)
.++.||++|+.. ..+.+.|.. |+. .+.+..|+..+| ..++++++... +. .+.++ .+..
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~ 343 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE-ALER 343 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHH
Confidence 357788888754 122333332 332 345556665544 44555554332 11 11211 2444
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 532 IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 532 LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
|.....--+-++|+++++.|+..+. ...|+.+|+...+
T Consensus 344 L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~~ 381 (463)
T TIGR01818 344 LKQLRWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAEL 381 (463)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHhchHHH
Confidence 5555444466999999999987663 4567777776554
No 224
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=5.8e-07 Score=97.73 Aligned_cols=153 Identities=19% Similarity=0.294 Sum_probs=99.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----EEeechhhHH------H-hh-------c------cchHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----ISCSASEFVE------L-YV-------G------MGASRVRDLF 417 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf----i~is~se~~~------~-~v-------G------~~~~~vr~lF 417 (731)
.+.|..+||+||+|+||+++|.++|+.+.+.- -.+.+-.++. . ++ | -+.+.||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 46788899999999999999999998764321 0011111111 0 00 1 1245667766
Q ss_pred HHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 004770 418 ARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (731)
Q Consensus 418 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (731)
+.+... .-.|++||++|.+.. ..-|.||+.|+. +..++++|..|+.++.|.|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--h
Confidence 655432 235999999999852 345899999984 44567777888889999999998 5
Q ss_pred cceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCH
Q 004770 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (731)
Q Consensus 494 Fdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (731)
. ..+.|..|+.++..+.|... +. + ..+...++..+.|-.+
T Consensus 164 C-q~i~~~~~~~~~~~~~L~~~----~~--~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 164 C-QRLEFKLPPAHEALAWLLAQ----GV--S-ERAAQEALDAARGHPG 203 (319)
T ss_pred h-eEeeCCCcCHHHHHHHHHHc----CC--C-hHHHHHHHHHcCCCHH
Confidence 3 37889999988777666532 22 1 1123455666666433
No 225
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.59 E-value=8.8e-08 Score=102.13 Aligned_cols=191 Identities=18% Similarity=0.211 Sum_probs=120.7
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+..+.-++.||++.+++...+.++.+.- +.| ++|+|||||||||+...+.|..+..|.=. .+-+.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~--~~m~l 97 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPT--TSMLL 97 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCc--hhHHH
Confidence 45667788999999999998888864322 223 79999999999999999999998765111 11111
Q ss_pred HHhh----ccch-HHHHHHHHHHHh-------cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCC
Q 004770 403 ELYV----GMGA-SRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (731)
Q Consensus 403 ~~~v----G~~~-~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 470 (731)
+.-. |-.. ..-...|..++. ..+..+++||.|++....+ |+|-+.++.+..+.
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------nALRRviek~t~n~ 162 (360)
T KOG0990|consen 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------NALRRVIEKYTANT 162 (360)
T ss_pred HhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH---------------HHHHHHHHHhccce
Confidence 1111 1111 112234555552 2677999999999975533 44445666555544
Q ss_pred cEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHH
Q 004770 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (731)
Q Consensus 471 ~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~e 550 (731)
.++..+|.+..+.|++++ |+. .+.+.+.+.......+.+++........++ -...+++. +-.|++..+|-
T Consensus 163 --rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~-~~~a~~r~----s~gDmr~a~n~ 232 (360)
T KOG0990|consen 163 --RFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPE-GYSALGRL----SVGDMRVALNY 232 (360)
T ss_pred --EEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHH-HHHHHHHH----hHHHHHHHHHH
Confidence 445678999999999987 665 456677777777888888886643332222 12223332 34466655554
Q ss_pred HH
Q 004770 551 AA 552 (731)
Q Consensus 551 Aa 552 (731)
..
T Consensus 233 Lq 234 (360)
T KOG0990|consen 233 LQ 234 (360)
T ss_pred HH
Confidence 33
No 226
>PRK15115 response regulator GlrR; Provisional
Probab=98.57 E-value=6.3e-07 Score=101.01 Aligned_cols=181 Identities=23% Similarity=0.359 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh-----ccchH-------HHHHHHHHHHhcCCeEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV-----GMGAS-------RVRDLFARAKKEAPSIIF 429 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v-----G~~~~-------~vr~lF~~A~~~aP~ILf 429 (731)
...++|+|++|||||++|+++.... +.||+.++|..+.+... |.... ....+|+.+ ...+||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEE
Confidence 3469999999999999999998864 57999999987643211 11000 000112222 345999
Q ss_pred EcccchhhcccCCcccccchHHHHHHHHHHHHhhcC-----CCC----CCcEEEEEEcCCCCCCCccccCCCccc-----
Q 004770 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS----NSAVIVLGATNRSDVLDPALRRPGRFD----- 495 (731)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-----~~~----~~~VIVIaATN~pd~LDpALlRpGRFd----- 495 (731)
|||||.|....+ ..|+..++. ... ...+.+|++|+.. ++..+. .|+|.
T Consensus 234 l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~~ 295 (444)
T PRK15115 234 LDEIGDMPAPLQ---------------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLYY 295 (444)
T ss_pred EEccccCCHHHH---------------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHHH
Confidence 999999864432 223333321 111 2367899999863 333332 34552
Q ss_pred --eEEEeeCCCHHHHHH----HHHHHHhcC----CCC---CcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 496 --RVVMVETPDKIGREA----ILKVHVSKK----ELP---LAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 496 --r~I~v~~Pd~~eR~e----ILk~~l~~~----~l~---l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
..+.+..|...+|.+ ++++++.+. +.+ +.++ .++.|......-+.++|+++++.|+..+ ....
T Consensus 296 ~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~ 371 (444)
T PRK15115 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLMTASWPGNVRQLVNVIEQCVALT---SSPV 371 (444)
T ss_pred hhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCc
Confidence 156777888888842 445554331 111 2222 3566667775557899999999987654 3446
Q ss_pred ccHHHHHH
Q 004770 563 VEKIDFIH 570 (731)
Q Consensus 563 It~~d~~~ 570 (731)
|+.+++..
T Consensus 372 i~~~~l~~ 379 (444)
T PRK15115 372 ISDALVEQ 379 (444)
T ss_pred cChhhhhh
Confidence 66666543
No 227
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.57 E-value=4.1e-07 Score=106.09 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=128.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHhhccch--HHH--------HHHHHHHHhcCCeEEEEccc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGA--SRV--------RDLFARAKKEAPSIIFIDEI 433 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se~~~~~vG~~~--~~v--------r~lF~~A~~~aP~ILfIDEI 433 (731)
.||||.|++||+||+++++++.-+. .||+.+..+--.+..+|... ..+ ..++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999874 58888766555555555431 100 11222222 249999999
Q ss_pred chhhcccCCcccccchHHHHHHHHHHHHhhcCC-----------CCCCcEEEEEEcCCC---CCCCccccCCCccceEEE
Q 004770 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVM 499 (731)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~p---d~LDpALlRpGRFdr~I~ 499 (731)
..+. ..+++.|+.-|+.- .-...+++|++-|.. ..|+++++. ||+.++.
T Consensus 103 n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 8764 34677788877632 112467888874432 458999998 9999999
Q ss_pred eeCCCHHHH-------HHHHHHHHhcCCCCCcccCCHHHHHH--hCCCC-CHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 004770 500 VETPDKIGR-------EAILKVHVSKKELPLAKDIDLGDIAS--MTTGF-TGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (731)
Q Consensus 500 v~~Pd~~eR-------~eILk~~l~~~~l~l~~dvdl~~LA~--~t~G~-SgadL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (731)
++.|+..+. .+|.+..-.-.+..+.+. .++.++. ...|. |.+.-..+++-|..+|..+++..|+.+|+.
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 998876543 233332221122333322 2333322 12455 778888999999999999999999999999
Q ss_pred HHHHHHhc
Q 004770 570 HAVERSIA 577 (731)
Q Consensus 570 ~Alervi~ 577 (731)
+|+.-++.
T Consensus 245 ~Aa~lvL~ 252 (584)
T PRK13406 245 LAARLVLA 252 (584)
T ss_pred HHHHHHHH
Confidence 99987764
No 228
>PRK06526 transposase; Provisional
Probab=98.57 E-value=1.7e-07 Score=98.81 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEcccchhhcc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (731)
.+.+++|+||||||||+||.+++.++ |..+..++..++++..... ....+...+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 45689999999999999999998875 6777777888777654211 111222333322 34569999999876422
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
......+.+++..... +. .+|.+||.+
T Consensus 175 ----------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 ----------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ----------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 2223455566554321 12 366688875
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.53 E-value=9e-07 Score=92.95 Aligned_cols=178 Identities=18% Similarity=0.252 Sum_probs=119.7
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech-----
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----- 399 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s----- 399 (731)
+-+++.+.+.++....|+.+... ... .++|+|||+|+||.|.+.++.+++ |++=..+...
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~-----------~d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSST-----------GDF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred cchhhhcccHHHHHHHHHHhccc-----------CCC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 34577788888888877775531 122 369999999999999999999886 2221111111
Q ss_pred -------------hhHHH---hhcc-chHHHHHHHHHHHhcCC---------eEEEEcccchhhcccCCcccccchHHHH
Q 004770 400 -------------EFVEL---YVGM-GASRVRDLFARAKKEAP---------SIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (731)
Q Consensus 400 -------------e~~~~---~vG~-~~~~vr~lF~~A~~~aP---------~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (731)
..++. -.|. ..--+.++++...+..| .|++|-|.|.|.++.+
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ------------ 144 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ------------ 144 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH------------
Confidence 11110 0111 12335666666554333 4999999999976543
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHH
Q 004770 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (731)
Q Consensus 454 ~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA 533 (731)
..|-..|+.+..+ +.+|..+|....+-+++++ | ...|.++.|+.++...++...+.+.++.++.+ -+..+|
T Consensus 145 ---~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--R-Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~-~l~rIa 215 (351)
T KOG2035|consen 145 ---HALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--R-CLFIRVPAPSDEEITSVLSKVLKKEGLQLPKE-LLKRIA 215 (351)
T ss_pred ---HHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--h-eeEEeCCCCCHHHHHHHHHHHHHHhcccCcHH-HHHHHH
Confidence 3455567766654 4566678888889899987 4 34688999999999999999999988877655 367777
Q ss_pred HhCCC
Q 004770 534 SMTTG 538 (731)
Q Consensus 534 ~~t~G 538 (731)
+.+.|
T Consensus 216 ~kS~~ 220 (351)
T KOG2035|consen 216 EKSNR 220 (351)
T ss_pred HHhcc
Confidence 77665
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.52 E-value=6.5e-07 Score=97.79 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=49.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc---chHHHHHHHHHHHhcCCeEEEEcccchh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (731)
.+++|+||||||||+||.|+|+++ +..+++++..++...+... ........++... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 789999999999999999999986 7889999999887754321 1111111233222 3459999999764
No 231
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=6.6e-07 Score=84.15 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=48.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (731)
+.++|+||+|+|||++++.++++.. -.++++++.+......... . +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999876 7788888876654321111 1 233333332225679999999887
No 232
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=1.2e-06 Score=95.40 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=91.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE-Eeech--------------hhHHHhh---c--cchHHHHHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSAS--------------EFVELYV---G--MGASRVRDLFARAK 421 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi-~is~s--------------e~~~~~v---G--~~~~~vr~lF~~A~ 421 (731)
.+.|..+||+||.|+||+.+|+++|+.+.+.-- .-.|. |+..... | -+...+|++-+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 567888999999999999999999997633100 00111 1100000 1 12345676655543
Q ss_pred h----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceE
Q 004770 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (731)
Q Consensus 422 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~ 497 (731)
. ..-.|++||++|.+.. ..-|.||+.++. +..++++|..|+.++.|-|.+++ | -..
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--R-Cq~ 161 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--R-CQQ 161 (319)
T ss_pred hCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--c-cee
Confidence 2 2245999999999852 345899999984 55678888899999999999988 5 338
Q ss_pred EEeeCCCHHHHHHHHHH
Q 004770 498 VMVETPDKIGREAILKV 514 (731)
Q Consensus 498 I~v~~Pd~~eR~eILk~ 514 (731)
+.|+.|+.++..+.|..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999998888776653
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.50 E-value=9.5e-07 Score=93.23 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccch-HHHHHHHHHHHhcCCeEEEEcccchh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAV 436 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (731)
.+.+++|+||||||||+||-|+++++ |..+..++..+++...-..-. .....-+.... ....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCc
Confidence 46789999999999999999999986 789999999998875322111 11111122211 23449999999765
No 234
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.50 E-value=3e-07 Score=103.24 Aligned_cols=203 Identities=21% Similarity=0.291 Sum_probs=116.4
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh---
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 406 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v--- 406 (731)
.++|.......+.+-+..+. .....++++|++||||+++|+++.... +.||+.++|+.+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 45666665555544333222 234569999999999999999997654 57999999986543221
Q ss_pred --ccchHH-------HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC---------C
Q 004770 407 --GMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (731)
Q Consensus 407 --G~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~ 468 (731)
|..... ...+|. ....++|||||||.|....+ ..|+..++.-. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~~~q---------------~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISPMMQ---------------VRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCHHHH---------------HHHHHHHccCcEEeCCCCcee
Confidence 111000 001122 22466999999999864322 23333333211 0
Q ss_pred CCcEEEEEEcCCCCCCCccccCCCccce-------EEEeeCCCHHHHH----HHHHHHHhcC----CCC---CcccCCHH
Q 004770 469 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSKK----ELP---LAKDIDLG 530 (731)
Q Consensus 469 ~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~----eILk~~l~~~----~l~---l~~dvdl~ 530 (731)
...+.+|++|+.+- ..+..+|+|.. .+.+..|+..+|. .++++++.+. +.+ +.++ .+.
T Consensus 272 ~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (441)
T PRK10365 272 SVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ-AMD 347 (441)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 12567888887641 22334455542 5677788887764 3455554431 111 2222 345
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHH
Q 004770 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (731)
Q Consensus 531 ~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (731)
.|......-+.++|+++++.|+..+ ....|+.+++..
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~ 384 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPL 384 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCch
Confidence 5556554447799999999887654 344566666543
No 235
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.49 E-value=2.6e-06 Score=98.19 Aligned_cols=208 Identities=18% Similarity=0.216 Sum_probs=116.9
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee-chhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is-~se~~ 402 (731)
+...+.+.+||+-..+-.++++..+.... .+....+-+||+||||||||++++.+|++++..+..-. ...+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 44566788999988765555555554311 12334557889999999999999999999987666532 11110
Q ss_pred ------HHhhccc---------hHHHHHH-HHHHHh-----------cCCeEEEEcccchhhcccCCcccccchHHHHHH
Q 004770 403 ------ELYVGMG---------ASRVRDL-FARAKK-----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (731)
Q Consensus 403 ------~~~vG~~---------~~~vr~l-F~~A~~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (731)
..|.+.. .....++ +..++. ..+.||+|||+-.+.... .......
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~--------~~~f~~~ 155 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD--------TSRFREA 155 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh--------HHHHHHH
Confidence 0111110 1112222 111121 246699999997553211 1222333
Q ss_pred HHHHHHhhcCCCCCC-cEEEEEE-c------CCC--------CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC
Q 004770 456 LNQLLTEMDGFDSNS-AVIVLGA-T------NRS--------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (731)
Q Consensus 456 Ln~LL~emdg~~~~~-~VIVIaA-T------N~p--------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~ 519 (731)
|.+++.. ... ++|+|.+ + |.. ..+++.++...+. .+|.|.+-...-..+.|+..+...
T Consensus 156 L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 156 LRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 3333322 223 6777776 1 111 1456666654444 378888877777777777666543
Q ss_pred -----CC-CCcccCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 004770 520 -----EL-PLAKDID-LGDIASMTTGFTGADLANLVNEAALLAG 556 (731)
Q Consensus 520 -----~l-~l~~dvd-l~~LA~~t~G~SgadL~~Lv~eAa~~A~ 556 (731)
+. ....... ++.|+..+. +||+..++.-...+.
T Consensus 230 ~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 230 ARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 11 1121122 566666554 599999988777776
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=98.46 E-value=8.8e-07 Score=93.68 Aligned_cols=72 Identities=28% Similarity=0.384 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEcccchh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (731)
...+++|+||||||||+||.+++.++ |..+..+++.++...+... ....+...+... ...+.+++|||++.+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 45679999999999999999997664 7778888888877543221 112244455443 245679999999765
No 237
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=7.9e-07 Score=82.61 Aligned_cols=98 Identities=27% Similarity=0.390 Sum_probs=58.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--------CCcEEEeechhhHH------Hh---hc------cchHHHHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSASEFVE------LY---VG------MGASRVRDLFARAK 421 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el--------gvpfi~is~se~~~------~~---vG------~~~~~vr~lF~~A~ 421 (731)
.+.++++||||+|||++++.++.+. ..+++.+++..... .. .+ .....+.+.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4569999999999999999999987 78888887654331 10 01 12233334444443
Q ss_pred h-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 422 K-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 422 ~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
. ....+|+|||+|.+. + ...++.|...++ ..+-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 3 333599999999974 1 345666655555 333344555544
No 238
>PRK06921 hypothetical protein; Provisional
Probab=98.44 E-value=2e-06 Score=91.34 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccch
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (731)
...+++|+||||||||+|+.|+|+++ +..+++++..+++...... .....+.++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 45689999999999999999999975 6778888877766543221 11122222222 2345999999954
No 239
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.44 E-value=2e-07 Score=88.76 Aligned_cols=81 Identities=30% Similarity=0.485 Sum_probs=54.9
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHHHhhccchH
Q 004770 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELYVGMGAS 411 (731)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---vpfi~is~se~~~~~vG~~~~ 411 (731)
+|...+.+++++-+..+.. ....|||+|+|||||+++|+++....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 3556666666666554432 344699999999999999999998764 477777776532
Q ss_pred HHHHHHHHHHhcCCeEEEEcccchhhcc
Q 004770 412 RVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (731)
.++++.+ ....|||+|+|.+...
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH
Confidence 3455554 4559999999998543
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.43 E-value=5e-07 Score=90.34 Aligned_cols=71 Identities=28% Similarity=0.436 Sum_probs=48.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEcccch
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (731)
..+.+++|+||||||||+||.+++.++ |.++..++..++++..... ......+.++... .+.+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 346789999999999999999999875 8899999999998764322 1122334444433 234999999854
No 241
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.42 E-value=1.8e-06 Score=99.53 Aligned_cols=161 Identities=27% Similarity=0.297 Sum_probs=82.4
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhC-CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchH
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 411 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~ 411 (731)
.|.|+|++|+-|.=.+---. .+.+...| .+..-+|||+|.||||||.+.+.+++-+..-.+ .++-. +.-+|..+.
T Consensus 430 sIye~edvKkglLLqLfGGt-~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGT-RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcCC-cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceee
Confidence 46666666665432221111 11222222 344467999999999999999999987644322 22210 001111110
Q ss_pred -----HHHHHHHHHH---hcCCeEEEEcccchhhcccCCcccccchHHHH-HHHHHHHHhhcCC--CCCCcEEEEEEcCC
Q 004770 412 -----RVRDLFARAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE-QTLNQLLTEMDGF--DSNSAVIVLGATNR 480 (731)
Q Consensus 412 -----~vr~lF~~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~-~~Ln~LL~emdg~--~~~~~VIVIaATN~ 480 (731)
..+++.-+.- ...-.|..|||+|++..+... ..++..+ |+++--. .|+ .-+.+.-|+|++|.
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrS----vLhEvMEQQTvSIAK---AGII~sLNAR~SVLAaANP 578 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRS----VLHEVMEQQTLSIAK---AGIIASLNARCSVLAAANP 578 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHH----HHHHHHHHhhhhHhh---cceeeeccccceeeeeecc
Confidence 0111111111 112348899999998533211 1111111 1111100 111 12345678999985
Q ss_pred CC-------------CCCccccCCCccceEE-EeeCCCHH
Q 004770 481 SD-------------VLDPALRRPGRFDRVV-MVETPDKI 506 (731)
Q Consensus 481 pd-------------~LDpALlRpGRFdr~I-~v~~Pd~~ 506 (731)
.. .|+|.|++ |||.++ .++.||..
T Consensus 579 ~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 579 IRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred ccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 32 57899999 999775 45778766
No 242
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.41 E-value=8.7e-07 Score=104.03 Aligned_cols=222 Identities=26% Similarity=0.275 Sum_probs=130.2
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhh--CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe-echhhHHHhhcc
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRL--GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGM 408 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~l--g~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i-s~se~~~~~vG~ 408 (731)
-.|.|++++|+.|.=.+ +--..+...- ..+.--+|||+|.||||||.|.|.+++-+...++.- .++. -+|.
T Consensus 286 PsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 35889999988764322 2222221111 134446799999999999999999999876544332 2211 1233
Q ss_pred chHHHHHHH--H---HHH---hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC-----------CCC
Q 004770 409 GASRVRDLF--A---RAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSN 469 (731)
Q Consensus 409 ~~~~vr~lF--~---~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~ 469 (731)
++..+++-. + .|- ...+.|.+|||+|.+.... -+.+...|+.. .-+
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d---------------r~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED---------------RVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH---------------HHHHHHHHHhcEeeecccceeeecc
Confidence 333333322 1 111 1235699999999874221 13444444421 113
Q ss_pred CcEEEEEEcCCCC-------------CCCccccCCCccceEEEe-eCCCHHHHHH----HHHHHHhc-------------
Q 004770 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREA----ILKVHVSK------------- 518 (731)
Q Consensus 470 ~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~e----ILk~~l~~------------- 518 (731)
.+.-|+||+|... .|+++|++ |||..+.+ +.|+.+.-+. |+..|...
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~ 502 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDE 502 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccc
Confidence 4556888998753 57899999 99987765 5677653333 33334210
Q ss_pred -----------------CCC-CCcccCCHHHHH------H---------hCCCCCHHHHHHHHHHHHHHHHhhCCccccH
Q 004770 519 -----------------KEL-PLAKDIDLGDIA------S---------MTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (731)
Q Consensus 519 -----------------~~l-~l~~dvdl~~LA------~---------~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~ 565 (731)
+.. |.-.+...+.|. + .+...|.++|+.+++-|-..|..+-+..|+.
T Consensus 503 ~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 503 VEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 001 111111111111 1 1233678999999999999998899999999
Q ss_pred HHHHHHHHHHh
Q 004770 566 IDFIHAVERSI 576 (731)
Q Consensus 566 ~d~~~Alervi 576 (731)
+|+.+|+.-+.
T Consensus 583 eD~~eAi~lv~ 593 (682)
T COG1241 583 EDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHH
Confidence 99999986544
No 243
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.5e-06 Score=104.33 Aligned_cols=127 Identities=32% Similarity=0.378 Sum_probs=91.2
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-----
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----- 403 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~----- 403 (731)
.|+|++++...+.+.|..-+.. ++. .++-.+||.||.|+|||-||+|+|..+ .-.|+.+++++|.+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g-----l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG-----LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc-----cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 5899999988888877654431 011 356679999999999999999999987 46899999998765
Q ss_pred ----HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC---------CC
Q 004770 404 ----LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---------NS 470 (731)
Q Consensus 404 ----~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~---------~~ 470 (731)
.|+|. ...-.+.+..+...-|||+|||||.-- ..++|.|++.+|...- -.
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh---------------~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC---------------HHHHHHHHHHHhcCccccCCCcEeecc
Confidence 23333 233456666666667899999999742 2356777777764321 14
Q ss_pred cEEEEEEcCCC
Q 004770 471 AVIVLGATNRS 481 (731)
Q Consensus 471 ~VIVIaATN~p 481 (731)
++|||.|+|.-
T Consensus 701 N~I~IMTsn~~ 711 (898)
T KOG1051|consen 701 NAIFIMTSNVG 711 (898)
T ss_pred ceEEEEecccc
Confidence 68999998863
No 244
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.40 E-value=1.3e-06 Score=99.91 Aligned_cols=222 Identities=21% Similarity=0.208 Sum_probs=131.1
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHH--hhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhcc
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKY--IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGM 408 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~--~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~ 408 (731)
|-.|.|.+.+|.-|.-.+ +---.++ .....+..-+|||+|.|||||+-+.+++++-+..-++.. +.. +.-.|.
T Consensus 344 ~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-Gka--SSaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKA--SSAAGL 418 (764)
T ss_pred CccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Ccc--cccccc
Confidence 667999999998664322 2211222 223355667899999999999999999999776554432 110 000111
Q ss_pred chHHHHHH--HH---HHH---hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC-----------CCC
Q 004770 409 GASRVRDL--FA---RAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSN 469 (731)
Q Consensus 409 ~~~~vr~l--F~---~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~ 469 (731)
++.-+++- ++ +|- -....|..|||+|++..+.+ ..++..|+.- .-+
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq---------------vAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ---------------VAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH---------------HHHHHHHHhheehheecceEEeec
Confidence 11111110 00 111 01234899999999864322 2344444421 112
Q ss_pred CcEEEEEEcCCCC-------------CCCccccCCCccceEE-EeeCCCHHHHHHHHHHHHhcCCCCCccc------CCH
Q 004770 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVSKKELPLAKD------IDL 529 (731)
Q Consensus 470 ~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I-~v~~Pd~~eR~eILk~~l~~~~l~l~~d------vdl 529 (731)
.+--||||+|... .+++++++ |||..+ -++.|+...-..|-++.+.... .+++. ..+
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~-~i~~~~~~~~~~~~ 560 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHR-GIDDATERVCVYTL 560 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhc-cccccccccccccH
Confidence 3446889998642 46899998 999765 4577877655544444433211 00000 001
Q ss_pred HH----------------------H---------------HHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 530 GD----------------------I---------------ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 530 ~~----------------------L---------------A~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
+. | .+.+.+.|-++|+.|++.+-.+|..+-+..+|.+|+.+|+
T Consensus 561 e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~ 640 (764)
T KOG0480|consen 561 EQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAV 640 (764)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHH
Confidence 10 1 1124467889999999999999988889999999999998
Q ss_pred HHH
Q 004770 573 ERS 575 (731)
Q Consensus 573 erv 575 (731)
+-.
T Consensus 641 eLl 643 (764)
T KOG0480|consen 641 ELL 643 (764)
T ss_pred HHH
Confidence 653
No 245
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.39 E-value=7.5e-08 Score=105.20 Aligned_cols=218 Identities=25% Similarity=0.257 Sum_probs=112.7
Q ss_pred cccCChHhHHHHHH-HHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchH
Q 004770 333 DVAGVDEAKEELEE-IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 411 (731)
Q Consensus 333 DV~G~devK~~L~e-iV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~ 411 (731)
+|.|.+.+|..+.= ++.-...... .....+..-++||+|.||||||.|.+.+++-+.... ++++..... .|..+.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~--~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSA--AGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTC--CCCCEE
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCccc--CCccce
Confidence 57888888775421 1111000000 001124456799999999999999998866543333 333222100 000000
Q ss_pred H----------HH-HHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-----------CC
Q 004770 412 R----------VR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SN 469 (731)
Q Consensus 412 ~----------vr-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~ 469 (731)
. +. ..+-.|. ..|++|||+|.+... ....|+..|+.-. -+
T Consensus 101 ~~~d~~~~~~~leaGalvlad---~GiccIDe~dk~~~~---------------~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLAD---GGICCIDEFDKMKED---------------DRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHCT---TSEEEECTTTT--CH---------------HHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred eccccccceeEEeCCchhccc---Cceeeecccccccch---------------HHHHHHHHHHcCeeccchhhhccccc
Confidence 0 00 1222332 349999999998432 2355666665321 12
Q ss_pred CcEEEEEEcCCCC-------------CCCccccCCCccceEEEe-eCCCHHHHHHHHHHHHhcCCC--------------
Q 004770 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKEL-------------- 521 (731)
Q Consensus 470 ~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~eILk~~l~~~~l-------------- 521 (731)
...-|+||+|... .++++|++ |||..+.+ +.|+.+.-..+.++.+.....
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 4568999998754 47889998 99988765 677766555555544433210
Q ss_pred CCcccCC-------------------HHHHHH-------------hCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 004770 522 PLAKDID-------------------LGDIAS-------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (731)
Q Consensus 522 ~l~~dvd-------------------l~~LA~-------------~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (731)
.++.+.- .+.|.. .....|.+.|+.+++-|...|..+-+..|+.+|+.
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 1111110 111110 11235678889999999999999999999999999
Q ss_pred HHHHH
Q 004770 570 HAVER 574 (731)
Q Consensus 570 ~Aler 574 (731)
.|++-
T Consensus 321 ~Ai~L 325 (331)
T PF00493_consen 321 EAIRL 325 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 246
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.5e-06 Score=94.85 Aligned_cols=132 Identities=22% Similarity=0.291 Sum_probs=89.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------------------------EEEeechhhHHHhhc-----cchH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------------------------FISCSASEFVELYVG-----MGAS 411 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp-------------------------fi~is~se~~~~~vG-----~~~~ 411 (731)
.+.|..+||+||+|+|||++|+++|+.+.+. |+.++...-. .-.| -+.+
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 4788899999999999999999999986431 2222211000 0001 1346
Q ss_pred HHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCcc
Q 004770 412 RVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (731)
Q Consensus 412 ~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpA 487 (731)
.+|++.+.+.. ....|++||++|.+.. +..|.++..++... .++.+|.+|+.++.+.+.
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 67887776653 2345999999998842 23466777777543 345667788888899999
Q ss_pred ccCCCccceEEEeeCCCHHHHHHHHHH
Q 004770 488 LRRPGRFDRVVMVETPDKIGREAILKV 514 (731)
Q Consensus 488 LlRpGRFdr~I~v~~Pd~~eR~eILk~ 514 (731)
+.+ | -..+.|++|+.++..+.|..
T Consensus 160 i~S--R-c~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--R-CRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--H-hhhhcCCCCCHHHHHHHHHh
Confidence 887 4 34788999999887766654
No 247
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=7.9e-06 Score=78.22 Aligned_cols=142 Identities=16% Similarity=0.249 Sum_probs=75.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--------Cc-EEEeechhhHHH------------hhccchHHHHHH-HHHHHhcC
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAE--------VP-FISCSASEFVEL------------YVGMGASRVRDL-FARAKKEA 424 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg--------vp-fi~is~se~~~~------------~vG~~~~~vr~l-F~~A~~~a 424 (731)
-++|+|+||+|||++++.++..+. .+ ++.+.+.+.... ........+... ...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 488999999999999999987641 11 223333332221 111111222221 22333456
Q ss_pred CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCC
Q 004770 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (731)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (731)
+.+|+||.+|.+...... .........+.+++.. ...++.+++|.+.+.....+...+.. ...+.+...+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 779999999998753321 0011122233334432 12223334443332222223333322 2578899999
Q ss_pred HHHHHHHHHHHHhc
Q 004770 505 KIGREAILKVHVSK 518 (731)
Q Consensus 505 ~~eR~eILk~~l~~ 518 (731)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988753
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.25 E-value=6.7e-06 Score=78.05 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=63.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh----------------------cc--chHHHHHHHHHH
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV----------------------GM--GASRVRDLFARA 420 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v----------------------G~--~~~~vr~lF~~A 420 (731)
++|+||||+|||++++.++..+ +.+++.++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56677766543332110 00 001112234455
Q ss_pred HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
....|.+|+|||+..+....... .........+.+..++..+. +.++.+|++++.+
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecC
Confidence 66778899999999886442110 01122333445555555544 2355566666544
No 249
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.24 E-value=4.3e-05 Score=86.81 Aligned_cols=177 Identities=15% Similarity=0.202 Sum_probs=96.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech-------------hhHHHhhccchHHHHHHHHHHH----------
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-------------EFVELYVGMGASRVRDLFARAK---------- 421 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s-------------e~~~~~vG~~~~~vr~lF~~A~---------- 421 (731)
.+-+||+||+|||||+.++.++.++|+.++.-+.. .+...+....-.........+.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~ 189 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGD 189 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccc
Confidence 45688999999999999999999999877665411 1111111111112222222231
Q ss_pred --hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE-cCCCCCCCccccC------CC
Q 004770 422 --KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA-TNRSDVLDPALRR------PG 492 (731)
Q Consensus 422 --~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA-TN~pd~LDpALlR------pG 492 (731)
...|.+|+|||+-...... ....+..+|.+.-.... .++|+|.| ++.++..++..+. ..
T Consensus 190 ~~~~~~~liLveDLPn~~~~d-----------~~~~f~evL~~y~s~g~-~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ 257 (634)
T KOG1970|consen 190 DLRTDKKLILVEDLPNQFYRD-----------DSETFREVLRLYVSIGR-CPLIFIITDSLSNGNNNQDRLFPKDIQEEP 257 (634)
T ss_pred ccccCceEEEeeccchhhhhh-----------hHHHHHHHHHHHHhcCC-CcEEEEEeccccCCCcchhhhchhhhhhcc
Confidence 1346799999987654221 12333444443322222 23333333 3333433333322 22
Q ss_pred ccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcc-cC-CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAK-DI-DLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 493 RFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~-dv-dl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
|++ .|.|.+-...-..+.|+..+.....+... .+ +..++-..+.| +++||+..++.-.+.+
T Consensus 258 ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 258 RIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred Ccc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 444 67777777777778888877765444432 11 12333333443 5679999998877775
No 250
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.18 E-value=9.6e-06 Score=89.79 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEEeechhhHHHhh------ccchHHHHHHHHHHHhcCCeEEEEcccc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFVELYV------GMGASRVRDLFARAKKEAPSIIFIDEID 434 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-pfi~is~se~~~~~v------G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (731)
...|+|++||||+|+|||+|.-.+...+.. .-..+...+|+.... ......+..+-+..... ..||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 457999999999999999999999888754 212222223332110 01112233333333233 3399999986
Q ss_pred hhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
-- +-.....+..|+..+- ..+|++|+|+|++
T Consensus 138 V~------------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT------------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred cc------------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 42 1111345566666653 3688999999985
No 251
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.12 E-value=5e-06 Score=88.66 Aligned_cols=139 Identities=21% Similarity=0.340 Sum_probs=75.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC-c--EEEeechhhHHHhhccchHHHHHHHHHH-----------HhcCCeEEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV-P--FISCSASEFVELYVGMGASRVRDLFARA-----------KKEAPSIIFI 430 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgv-p--fi~is~se~~~~~vG~~~~~vr~lF~~A-----------~~~aP~ILfI 430 (731)
.+.+||+||+|||||++++.+-.++.- . ...++++... .+..++++.+.. .....+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 457999999999999999988876642 2 2233333221 112222222111 1123469999
Q ss_pred cccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCC-------CcEEEEEEcCCC---CCCCccccCCCccceEEEe
Q 004770 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-------SAVIVLGATNRS---DVLDPALRRPGRFDRVVMV 500 (731)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-------~~VIVIaATN~p---d~LDpALlRpGRFdr~I~v 500 (731)
||+..-..+.-+ ....-+.|.|++..=.-++.+ .++.+|||+|.+ ..|++.++| .| ..+.+
T Consensus 107 DDlN~p~~d~yg------tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~ 177 (272)
T PF12775_consen 107 DDLNMPQPDKYG------TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI 177 (272)
T ss_dssp ETTT-S---TTS--------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-
T ss_pred cccCCCCCCCCC------CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe
Confidence 999875433321 111234455554432111211 357888998854 247788886 55 38899
Q ss_pred eCCCHHHHHHHHHHHHhc
Q 004770 501 ETPDKIGREAILKVHVSK 518 (731)
Q Consensus 501 ~~Pd~~eR~eILk~~l~~ 518 (731)
+.|+.+....|+..++..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999988887776653
No 252
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.09 E-value=4e-05 Score=96.70 Aligned_cols=179 Identities=19% Similarity=0.278 Sum_probs=100.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE---EEeech---h
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---ISCSAS---E 400 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf---i~is~s---e 400 (731)
+...+++++|.++..++|.+++.. .....+-+-|+||+|+||||||+++++....+| +.+... .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345688999999988888776632 223456688999999999999999988764433 111110 0
Q ss_pred hHHHhh-----------ccchHHHH-------------HHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHH
Q 004770 401 FVELYV-----------GMGASRVR-------------DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (731)
Q Consensus 401 ~~~~~v-----------G~~~~~vr-------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (731)
....+. ......+. ...+......+.+|+||++|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 000000 00000000 1122222356779999998642 123
Q ss_pred HHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc-C-CHHHHHH
Q 004770 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-I-DLGDIAS 534 (731)
Q Consensus 457 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-v-dl~~LA~ 534 (731)
..+....+.+. .+-.||.||...+ +++....++.+.++.|+.++..+++..++-+...+. ++ . -..++++
T Consensus 312 ~~L~~~~~~~~--~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~ 383 (1153)
T PLN03210 312 DALAGQTQWFG--SGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVAL 383 (1153)
T ss_pred HHHHhhCccCC--CCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH
Confidence 33333333232 2334455666433 333234678999999999999999998875432221 11 0 1234567
Q ss_pred hCCCCC
Q 004770 535 MTTGFT 540 (731)
Q Consensus 535 ~t~G~S 540 (731)
.+.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 777754
No 253
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.08 E-value=1.4e-05 Score=80.85 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-HHhhc----------------------cchHHHH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-ELYVG----------------------MGASRVR 414 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~-~~~vG----------------------~~~~~vr 414 (731)
|.....-++|+||||+|||+++..++.+. +.+.++++..++. +.+.. .....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 45566679999999999999999988643 6677888776421 11000 0011133
Q ss_pred HHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
.+.+.+....|++|+||-|.++....... ......+.+..++..|..+..+.++.+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~----~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC----ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 33444455578999999999986432110 11122233333333343333345666666643
No 254
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.08 E-value=6.6e-06 Score=92.08 Aligned_cols=230 Identities=22% Similarity=0.199 Sum_probs=126.3
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee-chhhHHHhhccchH
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFVELYVGMGAS 411 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is-~se~~~~~vG~~~~ 411 (731)
+|.|.+++|+.|.-++---.+...-.-+.++..-+|+|.|.||+-|+-|.+.+.+-+..-.+..- ++ .-+|.++.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS----SGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS----SGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC----Cccccchh
Confidence 79999999998876553321111111222445567999999999999999999987755444331 11 11333333
Q ss_pred HHHHHHHH-------HH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC--CCCCcEEEEEEcCCC
Q 004770 412 RVRDLFAR-------AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGATNRS 481 (731)
Q Consensus 412 ~vr~lF~~-------A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~~~~VIVIaATN~p 481 (731)
-+++-..- |. -..-.|..|||+|++...... .-++..+|.--.+-. .|+ .-+.+.-|+||.|..
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt----AIHEVMEQQTISIaK--AGI~TtLNAR~sILaAANPa 492 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT----AIHEVMEQQTISIAK--AGINTTLNARTSILAAANPA 492 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH----HHHHHHHhhhhhhhh--hccccchhhhHHhhhhcCcc
Confidence 33221100 00 011348899999998643211 112211111111100 111 124556788888863
Q ss_pred C-------------CCCccccCCCccceEE-EeeCCCHHHHHHHHHHH----HhcCCCCCc-ccCCHHHH------HH--
Q 004770 482 D-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVH----VSKKELPLA-KDIDLGDI------AS-- 534 (731)
Q Consensus 482 d-------------~LDpALlRpGRFdr~I-~v~~Pd~~eR~eILk~~----l~~~~l~l~-~dvdl~~L------A~-- 534 (731)
. .|++||++ |||... ..+.||.+.-+.+.++. ...+.-++. +.++.+.+ ++
T Consensus 493 yGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~ 570 (721)
T KOG0482|consen 493 YGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRK 570 (721)
T ss_pred ccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhc
Confidence 1 58999999 999654 44678776655444432 221111100 00111111 11
Q ss_pred --------------------------hCC-CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 535 --------------------------MTT-GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 535 --------------------------~t~-G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
... -.|++.|-.+++.+..+|..+-...|+.+|+.+|+.-
T Consensus 571 ~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 571 NPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRL 637 (721)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 111 2357788888888888888888888888888888853
No 255
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.04 E-value=6.4e-06 Score=94.89 Aligned_cols=184 Identities=25% Similarity=0.352 Sum_probs=109.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc--CCcEEEeechhhHHH-----hhccch--------HHHHHHHHHHHhcCCeEEEEc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVEL-----YVGMGA--------SRVRDLFARAKKEAPSIIFID 431 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el--gvpfi~is~se~~~~-----~vG~~~--------~~vr~lF~~A~~~aP~ILfID 431 (731)
.+||.|.|||||-.|||++.... .-||+.++|.-+-+. ++|..+ +-.+..+++|... .+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccHHH
Confidence 49999999999999999997654 579999999765542 233222 2223333444333 89999
Q ss_pred ccchhhcccCCcccccchHHHHHHHHHHHHh-----hcCCCCCCcEEEEEEcCCCCCCCccccCCCccce-------EEE
Q 004770 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVM 499 (731)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~ 499 (731)
||..+.-.-+ ..|-+.|.+ +.+-...-.|-||+||+++ =..|.+-|||-+ .+.
T Consensus 415 eIgd~p~~~Q------------s~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d---l~~lv~~g~fredLyyrL~~~~ 479 (606)
T COG3284 415 EIGDMPLALQ------------SRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD---LAQLVEQGRFREDLYYRLNAFV 479 (606)
T ss_pred HhhhchHHHH------------HHHHHHHhhCceeccCCcceeEEEEEEeccCcC---HHHHHHcCCchHHHHHHhcCee
Confidence 9987753221 122233333 2333333468899999875 234566677753 456
Q ss_pred eeCCCHHHHH---HHHHHHHhcCC---CCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 500 VETPDKIGRE---AILKVHVSKKE---LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 500 v~~Pd~~eR~---eILk~~l~~~~---l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
|.+|...+|. ..|.+++.+++ +.++++.-..-++..-+| +.++|.++++.++..+. ...|...|+...+
T Consensus 480 i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~~---~g~~~~~dlp~~l 554 (606)
T COG3284 480 ITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALSD---GGRIRVSDLPPEL 554 (606)
T ss_pred eccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCC---CCeeEcccCCHHH
Confidence 7778887775 34444444332 223333222223444455 78999999998877663 3344444544444
No 256
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00015 Score=75.95 Aligned_cols=186 Identities=22% Similarity=0.242 Sum_probs=115.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC---CcEEEee-----chhhHHHhhccc------------hHHHHHHHHHHHh-cCC
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-----ASEFVELYVGMG------------ASRVRDLFARAKK-EAP 425 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg---vpfi~is-----~se~~~~~vG~~------------~~~vr~lF~~A~~-~aP 425 (731)
-+.++|+-|+|||+++|++...++ +-.++++ .+.+.+.++.+. +..-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 477999999999999998877663 2223443 233333322221 1222333333333 456
Q ss_pred eEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccC------CCccceEEE
Q 004770 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR------PGRFDRVVM 499 (731)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlR------pGRFdr~I~ 499 (731)
-++++||.+.+..+. -..+.-|.+.-+++...-.|+.|+-.. |.+.+++ --|++-.|+
T Consensus 133 v~l~vdEah~L~~~~------------le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 133 VVLMVDEAHDLNDSA------------LEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred eEEeehhHhhhChhH------------HHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEe
Confidence 899999999885321 122222222222233334566666542 3332211 127776688
Q ss_pred eeCCCHHHHHHHHHHHHhcCCC--CCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHH
Q 004770 500 VETPDKIGREAILKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (731)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~l--~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (731)
+++.+.++-...++.++..-+. ++..+-.+..+...+.| .|+-+.+++..|...|...++..|+...+.
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 8899999899999999976432 33344456777888888 689999999999999999998888776543
No 257
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.02 E-value=8.7e-05 Score=78.31 Aligned_cols=174 Identities=22% Similarity=0.315 Sum_probs=91.1
Q ss_pred HHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh--cCCc-----EEEeech----hhHHH---hhcc
Q 004770 343 ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVP-----FISCSAS----EFVEL---YVGM 408 (731)
Q Consensus 343 ~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e--lgvp-----fi~is~s----e~~~~---~vG~ 408 (731)
+++++.+.|.... ...+-|.|+|++|+|||+||+.+++. ..-. ++.++.. ++... ..+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4455555544421 34567899999999999999999987 3222 2222211 11111 1111
Q ss_pred ---------chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 409 ---------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 409 ---------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
......+.+.......+++|+||+++... .+..+...+.... .+..||.||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCHH--SS-EEEEEES
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc-----------------ccccccccccccc--cccccccccc
Confidence 12233444444445569999999987542 1222222222111 2345566776
Q ss_pred CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCC-CCcc-cCCHHHHHHhCCCCCHHHHHHH
Q 004770 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL-PLAK-DIDLGDIASMTTGFTGADLANL 547 (731)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l-~l~~-dvdl~~LA~~t~G~SgadL~~L 547 (731)
...... ... .-+..+.++..+.++-.++|+........ .... +-....|++.+.| .|-.|..+
T Consensus 138 ~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 138 DRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp CGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 543221 111 11568999999999999999998765431 1111 1135678888877 46656555
No 258
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=6.9e-05 Score=80.53 Aligned_cols=122 Identities=14% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--------Hh-hc----cchHHHHHHHHHHHh----cC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--------LY-VG----MGASRVRDLFARAKK----EA 424 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~--------~~-vG----~~~~~vr~lF~~A~~----~a 424 (731)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+|..+.. .+ .+ -+...+|++.+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 467788999999999999999999998754210001110000 00 01 134556666655543 22
Q ss_pred CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCC
Q 004770 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (731)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~P 503 (731)
..|++||++|.+.. +.-|.||+.++. +..++++|..|+.++.|.|.+++ |. ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt~---------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTL---------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcCH---------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 35999999999853 345899999984 55677888888889999999887 42 25555543
No 259
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.91 E-value=0.00012 Score=76.43 Aligned_cols=136 Identities=17% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (731)
..+-.++||+|||||..+|++|..+|.+++.++|++-.+ ...+..+|.-+... -+-+.+||++.+...-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v---- 100 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV---- 100 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH----
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH----
Confidence 456789999999999999999999999999999987544 34566667655544 4599999999874321
Q ss_pred cccchHHHHHHHHHHHHhhcCC-----------CCCCcEEEEEEcCC----CCCCCccccCCCccceEEEeeCCCHHHHH
Q 004770 445 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGRE 509 (731)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~----pd~LDpALlRpGRFdr~I~v~~Pd~~eR~ 509 (731)
. ....+.+..+...+..- .-+..+-++.|.|. ...||+.|+. +=|-+.+..||.....
T Consensus 101 ---L-S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ 173 (231)
T PF12774_consen 101 ---L-SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIA 173 (231)
T ss_dssp ---H-HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHH
T ss_pred ---H-HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHH
Confidence 0 01111122222222110 01123334455553 3578888874 4468999999876655
Q ss_pred HHHHHHHhcCCC
Q 004770 510 AILKVHVSKKEL 521 (731)
Q Consensus 510 eILk~~l~~~~l 521 (731)
+..+-..++
T Consensus 174 ---ei~L~s~GF 182 (231)
T PF12774_consen 174 ---EILLLSQGF 182 (231)
T ss_dssp ---HHHHHCCCT
T ss_pred ---HHHHHHcCc
Confidence 444444443
No 260
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.90 E-value=9.2e-05 Score=80.45 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=116.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
+...|+.+++.....+.+.+-. +++..+.+ .+||.|.+||||-++||+..... ..||+.++|..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA------~k~AmlDA----PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQA------QKLAMLDA----PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHH------HHhhccCC----CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 4456777777776555444322 22222222 39999999999999999987654 68999999987754
Q ss_pred H-----hhccch--HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC-C-------CC
Q 004770 404 L-----YVGMGA--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-F-------DS 468 (731)
Q Consensus 404 ~-----~vG~~~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-~-------~~ 468 (731)
. ..|..+ +--..+|+.|... .+|+|||-.+.+.-+ .-+-.+|+. | | +-
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~lQ------------aKLLRFL~D--GtFRRVGee~Ev 331 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRLQ------------AKLLRFLND--GTFRRVGEDHEV 331 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHHH------------HHHHHHhcC--CceeecCCcceE
Confidence 2 223322 3345678887665 899999987754322 222333332 2 1 11
Q ss_pred CCcEEEEEEcCCC--CCCCccccCCCccc--eEEEeeCCCHHHHHH--------HHHHHHhcCCCCCcccCC---HHHHH
Q 004770 469 NSAVIVLGATNRS--DVLDPALRRPGRFD--RVVMVETPDKIGREA--------ILKVHVSKKELPLAKDID---LGDIA 533 (731)
Q Consensus 469 ~~~VIVIaATN~p--d~LDpALlRpGRFd--r~I~v~~Pd~~eR~e--------ILk~~l~~~~l~l~~dvd---l~~LA 533 (731)
.-.|.||+||..+ +.....-.|..-|. .++.+..|...+|.+ .+..+..+.+.+.. ..+ +..+.
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~p-kl~~~~~~~L~ 410 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRP-KLAADLLTVLT 410 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCC-ccCHHHHHHHH
Confidence 2368999999764 22221111111111 266777788777642 23334444444332 222 33344
Q ss_pred HhCCCCCHHHHHHHHHHHHHHH
Q 004770 534 SMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 534 ~~t~G~SgadL~~Lv~eAa~~A 555 (731)
+...--+-++|.|++-+|+...
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHHh
Confidence 4443336688888888777554
No 261
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=9e-05 Score=89.37 Aligned_cols=201 Identities=24% Similarity=0.334 Sum_probs=127.3
Q ss_pred cccccCC-hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeech
Q 004770 331 FADVAGV-DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSAS 399 (731)
Q Consensus 331 f~DV~G~-devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is~s 399 (731)
++-++|. ++. ++.+++-|-. +..++-+|+|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~dee---irRvi~iL~R---------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEE---IRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHH---HHHHHHHHhc---------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5667776 443 3344433322 333678999999999999999999864 3566777766
Q ss_pred hhHH--HhhccchHHHHHHHHHHHh-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 004770 400 EFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (731)
Q Consensus 400 e~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (731)
.+.. ++.|+.+.+++++.+.+.. ...-||||||++-+...... .+ .....|-|-..+. +.++-+|+
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~----~~d~~nlLkp~L~----rg~l~~IG 321 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YG----AIDAANLLKPLLA----RGGLWCIG 321 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---ch----HHHHHHhhHHHHh----cCCeEEEe
Confidence 5443 5778888999999998884 45569999999998765432 01 2223333322222 34488898
Q ss_pred EcCCC-----CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccC------CHHHHH--HhCCCCCHHH
Q 004770 477 ATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI------DLGDIA--SMTTGFTGAD 543 (731)
Q Consensus 477 ATN~p-----d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dv------dl~~LA--~~t~G~Sgad 543 (731)
||..- -.=||++-| ||+ .+.++.|+.++...||.........+....+ ....++ ..+..+-+.-
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~ 398 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDC 398 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchh
Confidence 88532 234899999 998 6778999988777777766544222211111 111122 2334455667
Q ss_pred HHHHHHHHHHHHHh
Q 004770 544 LANLVNEAALLAGR 557 (731)
Q Consensus 544 L~~Lv~eAa~~A~r 557 (731)
...++++|+.....
T Consensus 399 aidl~dEa~a~~~~ 412 (898)
T KOG1051|consen 399 AIDLEDEAAALVKS 412 (898)
T ss_pred cccHHHHHHHHHhh
Confidence 77888888766543
No 262
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.89 E-value=0.00011 Score=72.44 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh------hccc-----------------------hH----
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGMG-----------------------AS---- 411 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~------vG~~-----------------------~~---- 411 (731)
+|++||||||||+|+..++.+. |.++++++..+-.+.+ .|.. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887653 6777777654322210 0100 00
Q ss_pred -HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 412 -RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 412 -~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
.+..+...+....|.+|+|||+..+... ........+..++..+... ++.+|.+++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~--------~~~~~~~~i~~l~~~l~~~----g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM--------EQSTARLEIRRLLFALKRF----GVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc--------ChHHHHHHHHHHHHHHHHC----CCEEEEEeccc
Confidence 1233344445567999999999887532 1122233445556555422 44555555443
No 263
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00019 Score=77.61 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=86.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------c--EEEeechhhHHHhhccchHHHHHHHHHHHh-----cC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------P--FISCSASEFVELYVGMGASRVRDLFARAKK-----EA 424 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgv-----------p--fi~is~se~~~~~vG~~~~~vr~lF~~A~~-----~a 424 (731)
+.+...||+|+.|.||+.+|+++++.+.+ | ++.++... ..-....++++.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 55677999999999999999999998632 1 22222000 00123456666555532 24
Q ss_pred CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCC
Q 004770 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (731)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (731)
..|++||++|.+. ....|.||..++. +...+++|..|+.++.|-|.+++ | ..++.+.+|+
T Consensus 91 ~KvvII~~~e~m~---------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--R-c~~~~f~~l~ 150 (299)
T PRK07132 91 KKILIIKNIEKTS---------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--R-CQVFNVKEPD 150 (299)
T ss_pred ceEEEEecccccC---------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--C-eEEEECCCCC
Confidence 5699999998874 2345789999885 33556666667678899999887 4 3478999998
Q ss_pred HHHHHHHHHH
Q 004770 505 KIGREAILKV 514 (731)
Q Consensus 505 ~~eR~eILk~ 514 (731)
.++..+.|..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8887766553
No 264
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00034 Score=74.02 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh------hHH------Hh--h---ccchHHHHHHHHHHHh---
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE------FVE------LY--V---GMGASRVRDLFARAKK--- 422 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se------~~~------~~--v---G~~~~~vr~lF~~A~~--- 422 (731)
.+|..+||+||+|+||..+|.++|..+-+.--.-.|.. +.. .+ . .-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 46788999999999999999999987633210001111 110 00 0 1133456666554432
Q ss_pred --cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEe
Q 004770 423 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (731)
Q Consensus 423 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v 500 (731)
....|++||++|.+. ....|.||..++ ++..++++|..|+.++.|.|.+++ |- .++.+
T Consensus 85 e~~~~KV~II~~ae~m~---------------~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN---------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RC-VQYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhC---------------HHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--he-eeeec
Confidence 224699999999985 235599999998 455778888899999999999998 53 24555
Q ss_pred eCC
Q 004770 501 ETP 503 (731)
Q Consensus 501 ~~P 503 (731)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 555
No 265
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.85 E-value=8.5e-05 Score=83.58 Aligned_cols=165 Identities=26% Similarity=0.362 Sum_probs=83.8
Q ss_pred cccCChHhHHHHHHHHHHhcChhHH-hhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchH
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKY-IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 411 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~-~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~ 411 (731)
.+.|.+++|+.+.=++--- ..+.+ ..+-.+..-+|||-|.|||-|+-|.|-+-.-..+-++. ++.. +.-.|.++.
T Consensus 332 SIfG~~DiKkAiaClLFgG-srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGG-SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHhhcC-ccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceee
Confidence 4778888887665443211 11100 01122344569999999999999999886654433322 2110 000111111
Q ss_pred HHHH-----HHHH--HH-hcCCeEEEEcccchhhcccCCcccccchHHH-HHHHHHHHHhhcCCC--CCCcEEEEEEcCC
Q 004770 412 RVRD-----LFAR--AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDER-EQTLNQLLTEMDGFD--SNSAVIVLGATNR 480 (731)
Q Consensus 412 ~vr~-----lF~~--A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~-~~~Ln~LL~emdg~~--~~~~VIVIaATN~ 480 (731)
-+|+ .+-+ |. ...-.|++|||+|++-.... ..-++.. .|++.--- .|+. -+++.-|+||.|.
T Consensus 408 V~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR----VAIHEAMEQQTISIAK---AGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 408 VIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR----VAIHEAMEQQTISIAK---AGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EEecCCcceEEEecceEEEecCCEEEeehhhccCchhh----hHHHHHHHhhhHHHhh---hcceeeecchhhhhhhcCC
Confidence 1111 0000 00 01234999999999843211 1112211 22222111 1221 2466778899986
Q ss_pred C-----------CCCC--ccccCCCccceEEEeeCCCHHHHHH
Q 004770 481 S-----------DVLD--PALRRPGRFDRVVMVETPDKIGREA 510 (731)
Q Consensus 481 p-----------d~LD--pALlRpGRFdr~I~v~~Pd~~eR~e 510 (731)
+ +.|| +.+++ |||.++.+..-..+++-.
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~ 521 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDI 521 (729)
T ss_pred ccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhh
Confidence 4 2343 77888 999888887654444433
No 266
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.84 E-value=5.1e-05 Score=78.58 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=42.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh----------HHHhhccchHHHHHHHHHHH--hcCCeEEEE
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF----------VELYVGMGASRVRDLFARAK--KEAPSIIFI 430 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~----------~~~~vG~~~~~vr~lF~~A~--~~aP~ILfI 430 (731)
+.|..+||||+||+|||++|+.+++. ..++..+.+.- .+.-.....+.+.+.+..+. .....+|+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 34677999999999999999999742 22222222110 00000111123333333332 234569999
Q ss_pred cccchhhc
Q 004770 431 DEIDAVAK 438 (731)
Q Consensus 431 DEIDaL~~ 438 (731)
|.|+.+..
T Consensus 88 DsI~~l~~ 95 (220)
T TIGR01618 88 DNISALQN 95 (220)
T ss_pred ecHHHHHH
Confidence 99998765
No 267
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00039 Score=74.91 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=82.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE----Ee-echhhHH---------Hhh---c--cchHHHHHHHHHHHh
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI----SC-SASEFVE---------LYV---G--MGASRVRDLFARAKK 422 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi----~i-s~se~~~---------~~v---G--~~~~~vr~lF~~A~~ 422 (731)
.+.+..+||+|| +||+++|+++|..+.+.-- .+ .|..... .++ | -....+|++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 467888999996 6899999999987643210 00 1111110 001 1 124567776665543
Q ss_pred ----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEE
Q 004770 423 ----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (731)
Q Consensus 423 ----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I 498 (731)
....|++||++|.+.. ..-|.||+.++. +..++++|..|+.++.|-|.+++ |. .++
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eee
Confidence 2335999999999852 345899999984 44567888888889999999988 42 367
Q ss_pred EeeCCCHHHHHHHH
Q 004770 499 MVETPDKIGREAIL 512 (731)
Q Consensus 499 ~v~~Pd~~eR~eIL 512 (731)
.|+. +.++..+++
T Consensus 159 ~f~~-~~~~~~~~L 171 (290)
T PRK07276 159 HFPK-NEAYLIQLL 171 (290)
T ss_pred eCCC-cHHHHHHHH
Confidence 7754 444444444
No 268
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.77 E-value=0.00012 Score=79.81 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-EEeechhhHH-------HhhccchHHHHHHHHHHHhcCCeEEEEccc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEFVE-------LYVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpf-i~is~se~~~-------~~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 433 (731)
..+|+|+.|||+-|.|||+|.-.+...+..+- ..+....|.. ...|+. .-+..+-+... ..-.||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 34789999999999999999999988875433 2333233332 112222 11111111111 22239999998
Q ss_pred chhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC-CCC
Q 004770 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DVL 484 (731)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p-d~L 484 (731)
+- .+-...-++..|+.+|= ..+|++++|+|.+ +.|
T Consensus 140 ~V------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 140 EV------------TDIADAMILGRLLEALF----ARGVVLVATSNTAPDNL 175 (367)
T ss_pred ee------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHh
Confidence 53 12222346677777764 3589999999974 444
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.75 E-value=8.2e-05 Score=68.08 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg 390 (731)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988763
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00015 Score=71.28 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+.+..++++|+||+|||++++.+|..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345569999999999999999999865
No 271
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.74 E-value=0.00015 Score=74.36 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
|.+...-++|+||||+|||+++..+|.+. +.+.++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 55666678999999999999999998744 6777888776
No 272
>PHA00729 NTP-binding motif containing protein
Probab=97.73 E-value=7.3e-05 Score=77.57 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.+++|+|+||||||+||.++|.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 273
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.72 E-value=0.00019 Score=81.76 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=57.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh------cc--------chHHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v------G~--------~~~~vr~lF~~A~~~ 423 (731)
|..+..-+||+||||+|||+|+..+|... +.++++++..+-.+... |. .+..+.++++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45666678999999999999999998765 67888888765444221 11 123355666777777
Q ss_pred CCeEEEEcccchhhcc
Q 004770 424 APSIIFIDEIDAVAKS 439 (731)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (731)
.|.+|+||+|..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988643
No 274
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.72 E-value=0.00013 Score=83.66 Aligned_cols=153 Identities=22% Similarity=0.301 Sum_probs=80.4
Q ss_pred cccCChHhHHHHHHHHHH--hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccch
Q 004770 333 DVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~--Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~ 410 (731)
.|+|.+.+|..+.-.+-- -+++.. .-..+.--+|||+|.|||||+-+.|.+++-....++..--. ..-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 477888887766443321 122211 11133445699999999999999999999887766653211 01112211
Q ss_pred HHH-----HHHHHHHHh---cCCeEEEEcccchhhcccCCcccccchHHHHHH-H--H--HHHHhhcCCCCCCcEEEEEE
Q 004770 411 SRV-----RDLFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-L--N--QLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 411 ~~v-----r~lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~-L--n--~LL~emdg~~~~~~VIVIaA 477 (731)
... +++--.|.. ....|.+|||+|++....... -+...+|. + . .+.+.+ +....||||
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtS----IHEAMEQQSISISKAGIVtsL-----qArctvIAA 595 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTS----IHEAMEQQSISISKAGIVTSL-----QARCTVIAA 595 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccch----HHHHHHhcchhhhhhhHHHHH-----Hhhhhhhee
Confidence 111 111111110 123489999999986432211 11111111 0 0 122222 244678999
Q ss_pred cCCC-----------C--CCCccccCCCccceEEEee
Q 004770 478 TNRS-----------D--VLDPALRRPGRFDRVVMVE 501 (731)
Q Consensus 478 TN~p-----------d--~LDpALlRpGRFdr~I~v~ 501 (731)
+|.. + .|-..+++ |||-...+.
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvk 630 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVK 630 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeeee
Confidence 9862 1 34556676 999766554
No 275
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.70 E-value=0.00014 Score=70.73 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG 407 (731)
.++..++|+|+||||||++|+++|..++.+++.. .++.....|
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~~g 44 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEARAG 44 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 3567899999999999999999999999999854 444443333
No 276
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.68 E-value=0.0002 Score=78.16 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-h---hc------------cchHHHHHHHHHHH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~-~---vG------------~~~~~vr~lF~~A~ 421 (731)
|.+..+.++|+||||||||+||-.++.++ +.+.++++..+..+. + .| ..+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45666678999999999999988776544 667777766543321 0 01 11222222333344
Q ss_pred hcCCeEEEEcccchhhcccC--CcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
...+.+|+||-+-++.+... +...........+.+++++..+...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56789999999999875321 11000011123344555555555444456667766643
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.66 E-value=0.00026 Score=78.83 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=55.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh------hcc--------chHHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~------vG~--------~~~~vr~lF~~A~~~ 423 (731)
|..+..-++|+|+||+|||+|+..+|... +.++++++..+-.+.. .|. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45566679999999999999999998764 4578888765433211 111 122345666667777
Q ss_pred CCeEEEEcccchhhcc
Q 004770 424 APSIIFIDEIDAVAKS 439 (731)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (731)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.64 E-value=0.00034 Score=71.41 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
|.....-++++|+||+|||+++..+|.+. +.+.++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45556669999999999999999998764 5677777654
No 279
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.64 E-value=0.00069 Score=76.15 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=80.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (731)
.++|+||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888775556666655554322211 122222233332244699999998762
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHH-------------HHH
Q 004770 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA-------------ILK 513 (731)
Q Consensus 447 ~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~e-------------ILk 513 (731)
.+...+..+..... . .|++.+++...-....+-.-+|| ...+.+.+.+..|... .++
T Consensus 108 ----~W~~~lk~l~d~~~----~-~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 108 ----DWERALKYLYDRGN----L-DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----hHHHHHHHHHcccc----c-eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 24455555554322 1 34444443322222233333678 4578888888888854 567
Q ss_pred HHHhcCCCC
Q 004770 514 VHVSKKELP 522 (731)
Q Consensus 514 ~~l~~~~l~ 522 (731)
.++...++|
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 777665655
No 280
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.63 E-value=6.1e-05 Score=87.02 Aligned_cols=63 Identities=27% Similarity=0.365 Sum_probs=45.2
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-CcEEEeec
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSA 398 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-vpfi~is~ 398 (731)
-|+|++|++++++++.+.+.. . ...++ ...+.++|+||||+|||+||++||+.+. .|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~---A--a~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRH---A--AQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHH---H--HHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 488999999999877765521 1 11112 2335789999999999999999998763 46666544
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.62 E-value=0.00055 Score=71.23 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=47.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----Hh--hcc-----------------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LY--VGM----------------------- 408 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~----~~--vG~----------------------- 408 (731)
|.+....++|+||||||||+++..++... +.+.++++..+-.. .. .|.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 35556679999999999999986554433 56777776542221 10 000
Q ss_pred --chHHHHHHHHHHHhcCCeEEEEcccchhh
Q 004770 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (731)
Q Consensus 409 --~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (731)
....+..+.+.+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223344444445578899999998764
No 282
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.61 E-value=0.00017 Score=76.94 Aligned_cols=113 Identities=22% Similarity=0.383 Sum_probs=66.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC----------CcEEEee-chhhHHHhhcc-------------chHHHHHHHHHHH
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAE----------VPFISCS-ASEFVELYVGM-------------GASRVRDLFARAK 421 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg----------vpfi~is-~se~~~~~vG~-------------~~~~vr~lF~~A~ 421 (731)
++++|+||||+|||+|.+++++... .++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 6899999999999999999999763 2332222 12332211110 1122334566677
Q ss_pred hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCcc--------ccCCCc
Q 004770 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA--------LRRPGR 493 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpA--------LlRpGR 493 (731)
...|.||++||+.. ...+..++..+. .+..+|+++..++ +... |+..+-
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~-~~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGRD-VEDLYKRPVFKELIENEA 248 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechhH-HHHHHhChHHHHHHhcCc
Confidence 78999999999521 123445555543 3567788887543 2222 223455
Q ss_pred cceEEEee
Q 004770 494 FDRVVMVE 501 (731)
Q Consensus 494 Fdr~I~v~ 501 (731)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 77777664
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.61 E-value=0.00039 Score=71.96 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechh
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASE 400 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~se 400 (731)
|.+.+..++++||||+|||+|+..++.+ .+.+.++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 5677778999999999999999999765 367777776543
No 284
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.60 E-value=5.1e-05 Score=69.77 Aligned_cols=30 Identities=40% Similarity=0.697 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
|+|+||||+||||+|+.+|+.+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998876553
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.0005 Score=76.92 Aligned_cols=131 Identities=13% Similarity=0.201 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeechhhH-------HHhh---------ccchHHHHHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEFV-------ELYV---------GMGASRVRDLFAR 419 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el-------gvpfi~is~se~~-------~~~v---------G~~~~~vr~lF~~ 419 (731)
..|..++|+||+|+||||++..+|..+ +..+..+++..+. ..|. ......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 2344434333221 1111 1122333444433
Q ss_pred HHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCC-CcEEEEEEcCCCCCCCccccCCC--ccce
Q 004770 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPG--RFDR 496 (731)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-~~VIVIaATN~pd~LDpALlRpG--RFdr 496 (731)
. ....+|+||++..... +. ..+..+...++..... ..++|+.+|.....+...+.+-. .++
T Consensus 252 ~--~~~DlVLIDTaGr~~~----------~~---~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~- 315 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK----------DF---MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK- 315 (388)
T ss_pred h--CCCCEEEEcCCCCCcc----------CH---HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-
Confidence 3 3456999999876521 11 1234444444433322 46788888877766665544321 123
Q ss_pred EEEeeCCCHHHHH
Q 004770 497 VVMVETPDKIGRE 509 (731)
Q Consensus 497 ~I~v~~Pd~~eR~ 509 (731)
.+.+...|...+.
T Consensus 316 ~~I~TKlDet~~~ 328 (388)
T PRK12723 316 TVIFTKLDETTCV 328 (388)
T ss_pred EEEEEeccCCCcc
Confidence 4556666655544
No 286
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.57 E-value=8.5e-05 Score=90.02 Aligned_cols=205 Identities=16% Similarity=0.215 Sum_probs=121.6
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChh--HHhhhCCCCC-C-eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPD--KYIRLGARPP-R-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~--~~~~lg~~~p-k-gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.......++.|....-..+.+-++..+.++ .|...+.... + .+|++||||+|||+.+.++|.++|..++..+.++.
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 344555667776655554444444333221 1221111111 1 36999999999999999999999999999998866
Q ss_pred HHHhhc-----c--chHHHHHHH---HHHH--hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCC
Q 004770 402 VELYVG-----M--GASRVRDLF---ARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (731)
Q Consensus 402 ~~~~vG-----~--~~~~vr~lF---~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~ 469 (731)
.+.+.. . +...+...| .... ...-.||++||+|.+... +.+ .-..+.++.. .
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-dRg--------~v~~l~~l~~-------k 457 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-DRG--------GVSKLSSLCK-------K 457 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-hhh--------hHHHHHHHHH-------h
Confidence 543221 1 122233333 1010 111239999999998651 100 0122333333 2
Q ss_pred CcEEEEEEcCCCCCCCc-cccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHH
Q 004770 470 SAVIVLGATNRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (731)
Q Consensus 470 ~~VIVIaATN~pd~LDp-ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv 548 (731)
..+-+|+++|..+.... ++. |-+.-++|..|+...+..-+...+....+.+.++ .++++...+ ++||++.+
T Consensus 458 s~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~i 529 (871)
T KOG1968|consen 458 SSRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQII 529 (871)
T ss_pred ccCCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhcccceecCcH-HHHHHHHhc----ccCHHHHH
Confidence 33457778877654444 333 3345689999999999888888777766665554 466676655 66888777
Q ss_pred HHHHHH
Q 004770 549 NEAALL 554 (731)
Q Consensus 549 ~eAa~~ 554 (731)
+.-...
T Consensus 530 ~~lq~~ 535 (871)
T KOG1968|consen 530 MQLQFW 535 (871)
T ss_pred HHHhhh
Confidence 765544
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=0.00014 Score=72.08 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~ 398 (731)
.|+++||||+||||||+.|++.+++|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 59999999999999999999999999988764
No 288
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.53 E-value=0.00044 Score=70.43 Aligned_cols=105 Identities=21% Similarity=0.353 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh-----cCCcE-------------EEeechhhHH----HhhccchHHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE-----AEVPF-------------ISCSASEFVE----LYVGMGASRVRDLFARAKK 422 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e-----lgvpf-------------i~is~se~~~----~~vG~~~~~vr~lF~~A~~ 422 (731)
.+.++|+||+|+|||+|.|.++.. .|.++ ..++..+-+. .+. ....++.++++.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~ 103 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKK 103 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccC
Confidence 357899999999999999999863 34322 1111111111 111 112456677776665
Q ss_pred cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 423 ~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
..|.++++||.-+- ............++..+.. .+..+|.+|..++.+
T Consensus 104 ~~p~llllDEp~~g----------lD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 104 GEPVLFLLDEIFKG----------TNSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCCeEEEEecccCC----------CCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 58999999997321 1112222334555665531 244666677765433
No 289
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.52 E-value=0.0013 Score=73.92 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e----lgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (731)
..++++.||||||||+++.+++.. .| -.++.+.++.... . ..+. .-....+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHh--hhccCCEEEEEcCCCCc
Confidence 457999999999999999998776 24 2233333332211 1 1111 12345699999998864
No 290
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.52 E-value=2.8e-05 Score=69.98 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=24.0
Q ss_pred CcceeeehHHHHHHHHcCCccEEEEeCcEEE
Q 004770 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIM 208 (731)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~ 208 (731)
....+++||+|+++|++|+|++|++.++.+.
T Consensus 25 ~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 25 SQTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp -SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred CCCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 3466899999999999999999999987666
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.51 E-value=0.0012 Score=75.02 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se 400 (731)
..|..++|+|++|+|||+++..+|..+ |..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 467889999999999999999998765 55555555543
No 292
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.50 E-value=0.0011 Score=69.93 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgv 391 (731)
.+..++|+||+|+|||+|++.+++....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4456999999999999999999997754
No 293
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.49 E-value=0.00042 Score=75.73 Aligned_cols=119 Identities=20% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-h---hc------------cchHHHHHHHHHHH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~-~---vG------------~~~~~vr~lF~~A~ 421 (731)
|.+..+-++++||||+|||+||-.++.++ +.+.++++..+-.+. + .| ..+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45556678899999999999999887543 677777776442221 0 01 11122222222334
Q ss_pred hcCCeEEEEcccchhhcccC--CcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
...+++|+||-+-++.+... +...........+.+.+.|..+...-...++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 56788999999999875321 11000011122334455555444443445566666543
No 294
>PRK13949 shikimate kinase; Provisional
Probab=97.49 E-value=0.00083 Score=66.60 Aligned_cols=31 Identities=45% Similarity=0.662 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999998765
No 295
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.49 E-value=0.0011 Score=70.94 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=59.7
Q ss_pred cccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----cEEEe-------ech
Q 004770 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISC-------SAS 399 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-----pfi~i-------s~s 399 (731)
.+.|+.-+++.+-..+.. +.++. -+.|--+=|+|++||||.++++.||+.+.. |++.. .-.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 488999999888776655 44432 245666668999999999999999997621 22110 011
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhh
Q 004770 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (731)
.-++.|--+-...++ ..+....-+|+++||+|+|.
T Consensus 157 ~~ie~Yk~eL~~~v~---~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVR---GTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHH---HHHHhcCCceEEechhhhcC
Confidence 112222222222333 33345556699999999985
No 296
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.48 E-value=0.00016 Score=73.12 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=60.1
Q ss_pred EEEEcCCCCcHHHHHHHH-HHh---cCCcEEEeechhhHH-Hhhc---cchH-------------HHHHHHHHHHhcCCe
Q 004770 368 VLLVGLPGTGKTLLAKAV-AGE---AEVPFISCSASEFVE-LYVG---MGAS-------------RVRDLFARAKKEAPS 426 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAl-A~e---lgvpfi~is~se~~~-~~vG---~~~~-------------~vr~lF~~A~~~aP~ 426 (731)
.+++|.||+|||+.|-.. ... .|.+++. +..++.- .... .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999987655 432 3677665 5442221 1000 0000 001111111112467
Q ss_pred EEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCC
Q 004770 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (731)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (731)
+|+|||++.+.+.+... .......+ +++.+ ..+.++-||.+|-.+..||+.+++ ..+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998877531 01112222 33333 234677888999999999999986 778777776553
No 297
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.48 E-value=0.00036 Score=65.79 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=30.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
++++||||+|||++|+.++..++ ...++..++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999998 55566666665443
No 298
>PF14516 AAA_35: AAA-like domain
Probab=97.46 E-value=0.0078 Score=66.06 Aligned_cols=173 Identities=12% Similarity=0.097 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-------Hhh-----------c-------------cc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LYV-----------G-------------MG 409 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~-------~~v-----------G-------------~~ 409 (731)
++.-+.|.||..+|||+|...+.+.+ +...+++++..+-. .+. + ..
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 34568999999999999998887654 67777777654321 000 0 01
Q ss_pred hHHHHHHHHHH---HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC-CCCCC
Q 004770 410 ASRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR-SDVLD 485 (731)
Q Consensus 410 ~~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~-pd~LD 485 (731)
.......|+.. ....|-||+|||||.+..... ..+..-..+..+...-........+.+|.+... +....
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 12233344432 224688999999999974321 111112222222222111111123333333322 22221
Q ss_pred ccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHH
Q 004770 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (731)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv 548 (731)
..-.+|-.+...+.++..+.++...+++.|- ..+.... ++.|-..+.|. |.=+..+|
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGh-P~Lv~~~~ 240 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGH-PYLVQKAC 240 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCC-HHHHHHHH
Confidence 1224454555677888888889888877763 2333333 88888888884 44333333
No 299
>PTZ00202 tuzin; Provisional
Probab=97.45 E-value=0.0097 Score=67.32 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=50.1
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
-...+.+|.++...+|.+++... ....|+-+.|+||+|+|||+|++.++..++.+.+.++...
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 34568999999999888877532 2334567899999999999999999999998877776553
No 300
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.45 E-value=0.0053 Score=66.83 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=65.0
Q ss_pred CCeEEEEcccchhhcccC---CcccccchHHHHHHHHHHHHhhcCCCC-CCcEEE--EEEcCC---CC--CCCccccCCC
Q 004770 424 APSIIFIDEIDAVAKSRD---GRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIV--LGATNR---SD--VLDPALRRPG 492 (731)
Q Consensus 424 aP~ILfIDEIDaL~~~r~---~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIV--IaATN~---pd--~LDpALlRpG 492 (731)
-|.++-||++.++..... ... ..-+...-.....|+..+.+-.. ..+.+| +++|.. +. .++.+|....
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~-~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~ 234 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDF-KPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKE 234 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCC-ccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhcccc
Confidence 477888999999986521 111 11233333445555554333222 344444 555532 22 5666665321
Q ss_pred c------cc-------------eEEEeeCCCHHHHHHHHHHHHhcCCCCC--cccCCHHHHHHhCCCCCHHHHHH
Q 004770 493 R------FD-------------RVVMVETPDKIGREAILKVHVSKKELPL--AKDIDLGDIASMTTGFTGADLAN 546 (731)
Q Consensus 493 R------Fd-------------r~I~v~~Pd~~eR~eILk~~l~~~~l~l--~~dvdl~~LA~~t~G~SgadL~~ 546 (731)
- |. ..|.++..+.+|-..+++.+....-+.- .++.-.+.+...+. .+++++..
T Consensus 235 ~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~-GNp~el~k 308 (309)
T PF10236_consen 235 GFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN-GNPRELEK 308 (309)
T ss_pred CCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-CCHHHhcc
Confidence 1 11 2678899999999999999987643321 11212333344444 37777653
No 301
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.45 E-value=0.003 Score=68.04 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccc---------------
Q 004770 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL--------------- 488 (731)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpAL--------------- 488 (731)
.+-||||||+|++.+. + +.++|..+..+-...++++|.+.++. .|..++
T Consensus 172 ~~iViiIDdLDR~~~~-----------~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE-----------E----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred ceEEEEEcchhcCCcH-----------H----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 4669999999998422 2 23344444333334678888777642 111111
Q ss_pred -cCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 004770 489 -RRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (731)
Q Consensus 489 -lRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (731)
+.. -|+..+.+|.|+..+...++...+..
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 110 36778899999999988888777544
No 302
>PRK07261 topology modulation protein; Provisional
Probab=97.43 E-value=0.00023 Score=70.63 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s 399 (731)
-++++|+||+||||||+.++..++.|++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 389999999999999999999999998877543
No 303
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00033 Score=77.93 Aligned_cols=112 Identities=18% Similarity=0.331 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc----C-CcEEEeechhh-------HHH---hhcc------chHHHHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEF-------VEL---YVGM------GASRVRDLFARA 420 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el----g-vpfi~is~se~-------~~~---~vG~------~~~~vr~lF~~A 420 (731)
...+..++|+||+|+|||+++..+|..+ | ..+..+....+ +.. ..|. ....+...+..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~- 212 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE- 212 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-
Confidence 3456679999999999999999999763 3 24444444333 111 1111 11122222322
Q ss_pred HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcCCCCCCCcccc
Q 004770 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPALR 489 (731)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN~pd~LDpALl 489 (731)
.....+|+||...... . +..+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 213 -l~~~DlVLIDTaG~~~----------~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 213 -LRNKHMVLIDTIGMSQ----------R----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred -hcCCCEEEEcCCCCCc----------c----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 2345699999874321 1 1234444555544332 345788888887776665443
No 304
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.42 E-value=0.00079 Score=69.20 Aligned_cols=109 Identities=23% Similarity=0.226 Sum_probs=63.4
Q ss_pred hCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHH--------------hhc--------------
Q 004770 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL--------------YVG-------------- 407 (731)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~~~~--------------~vG-------------- 407 (731)
-|.+.+..+|+.||||||||+|+..++.+. |-+.++++..+-.+. +..
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 366777889999999999999999876533 788888875432221 100
Q ss_pred -----cchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 408 -----MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 408 -----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
.....+..+.+......|++++||-+..+. ... ........+..+...+. ..++.++.+..
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~------~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD------DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS------SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC------CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 001112333334445677899999999982 211 23334456666666664 23344444444
No 305
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.40 E-value=0.00065 Score=75.74 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=44.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeechhh-------HHHhh---------ccchHHHH---HHHHHHH-
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASEF-------VELYV---------GMGASRVR---DLFARAK- 421 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg-----vpfi~is~se~-------~~~~v---------G~~~~~vr---~lF~~A~- 421 (731)
-.||+||||+|||+|++.|++... +.++.+-..+. ..... .....+++ ..++.|+
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 399999999999999999998663 33233222222 11111 11122232 3334443
Q ss_pred ---hcCCeEEEEcccchhhccc
Q 004770 422 ---KEAPSIIFIDEIDAVAKSR 440 (731)
Q Consensus 422 ---~~aP~ILfIDEIDaL~~~r 440 (731)
.....+||||||+++.+..
T Consensus 251 ~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHcCCCEEEEEEChHHHHHHH
Confidence 2356799999999987643
No 306
>PRK06762 hypothetical protein; Provisional
Probab=97.40 E-value=0.0006 Score=66.54 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
|.-++|+|+||+|||++|+.+++.++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5678999999999999999999999766777777666553
No 307
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.36 E-value=0.00037 Score=68.43 Aligned_cols=106 Identities=22% Similarity=0.212 Sum_probs=63.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh--------hHHHhhc-----cchHHHHHHHHHHHhcCCe
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVELYVG-----MGASRVRDLFARAKKEAPS 426 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se--------~~~~~vG-----~~~~~vr~lF~~A~~~aP~ 426 (731)
..+...+.|.||+|+|||+|.+.+++.... --+.++..+ .....++ .+..+.+-.+..|....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 455667999999999999999999987521 012222211 1111111 1223445567777778899
Q ss_pred EEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
++++||-.. +.+....+.+.+++.++.. + +..+|.+|+.++
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 999999643 3445556667777776631 2 334555666543
No 308
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.35 E-value=0.00067 Score=69.39 Aligned_cols=116 Identities=19% Similarity=0.167 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---C------CcEEEeechhhHH--Hh----h--c---------------c
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---E------VPFISCSASEFVE--LY----V--G---------------M 408 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g------vpfi~is~se~~~--~~----v--G---------------~ 408 (731)
|.....-+.|+||||+|||+|+..+|... + ...++++..+-.. .. . + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56666779999999999999999998753 2 5666776543211 00 0 0 0
Q ss_pred chHHHHHHHHHH----HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 409 GASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 409 ~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
....+...+... ....+++|+||-|..+....... .....++.+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222223322 24568899999999886432110 001234445666666666655444555665554
No 309
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.35 E-value=0.00019 Score=75.81 Aligned_cols=99 Identities=23% Similarity=0.339 Sum_probs=63.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC---cEEEee-chhh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCS-ASEF 401 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv---pfi~is-~se~ 401 (731)
....+++++.-.....+.+.+++... .+...++++.||+|+|||+++++++.+... .++.+. ..++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 35678888887777666666665542 122457999999999999999999998743 333332 1122
Q ss_pred HHH------hhc-cchHHHHHHHHHHHhcCCeEEEEcccc
Q 004770 402 VEL------YVG-MGASRVRDLFARAKKEAPSIIFIDEID 434 (731)
Q Consensus 402 ~~~------~vG-~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (731)
.-. +.. .......++++.+....|.+|+|+||.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 110 001 234457788888888999999999984
No 310
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00063 Score=71.21 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
...--+.|.||+|||||||.+.+|+-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33445899999999999999999984
No 311
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.34 E-value=0.00078 Score=69.31 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=65.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhh------HHHh--hc---------------c
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VG---------------M 408 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se~------~~~~--vG---------------~ 408 (731)
|.+...-+.|+||||+|||+|+..++... +...++++..+- .+.. .+ .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56666778999999999999999998543 256677765441 1100 00 0
Q ss_pred chHHH----HHHHHHHHhc-CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 409 GASRV----RDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 409 ~~~~v----r~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
....+ ..+-...... .+++|+||-+.++....... .....++.+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 01111 1222222344 78999999999875421110 011234445566666666544444555666554
No 312
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.32 E-value=0.00086 Score=68.06 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=43.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC----cEEEeec-hhhHH---------HhhccchHHHHHHHHHHHhcCCeEEEEcc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgv----pfi~is~-se~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (731)
-++++||+|+|||++++++++.... .++.+.. .++.. .-++.....+.+.++.+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 2222211 11110 01122223455666777777899999999
Q ss_pred c
Q 004770 433 I 433 (731)
Q Consensus 433 I 433 (731)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 313
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.31 E-value=0.0014 Score=59.58 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888887765
No 314
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.31 E-value=0.00085 Score=83.48 Aligned_cols=137 Identities=28% Similarity=0.355 Sum_probs=91.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH---Hhh----cc--chHHHH-HHHHHHHhcCCeEEEEcccc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---LYV----GM--GASRVR-DLFARAKKEAPSIIFIDEID 434 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~---~~v----G~--~~~~vr-~lF~~A~~~aP~ILfIDEID 434 (731)
.+++||-|.||+|||+|+.|+|++.|-.++.|+.++-.+ .+- ++ ++-+.+ .-|-.|.+.. .-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhh
Confidence 456999999999999999999999999999999875433 221 11 111222 1233343333 389999996
Q ss_pred hhhcccCCcccccchHHHHHHHHHHHH--------hhc-CCCCCCcEEEEEEcCCC------CCCCccccCCCccceEEE
Q 004770 435 AVAKSRDGRFRIVSNDEREQTLNQLLT--------EMD-GFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVM 499 (731)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~Ln~LL~--------emd-g~~~~~~VIVIaATN~p------d~LDpALlRpGRFdr~I~ 499 (731)
-...+ .-.-+|..|. ++| .|.-+.+..|+||-|.- ..||..++. ||. +|.
T Consensus 1622 LaSQS------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1622 LASQS------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhHHH------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 53211 1122333333 333 23456778899988864 468999998 997 788
Q ss_pred eeCCCHHHHHHHHHHHHh
Q 004770 500 VETPDKIGREAILKVHVS 517 (731)
Q Consensus 500 v~~Pd~~eR~eILk~~l~ 517 (731)
++....++...|.+....
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ecccccchHHHHHHhhCC
Confidence 888888888777776654
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.31 E-value=0.0021 Score=66.91 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechh
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASE 400 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~se 400 (731)
|..++..+|++||||+|||+||..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6677788999999999999999877654 367777776544
No 316
>PRK04040 adenylate kinase; Provisional
Probab=97.28 E-value=0.0039 Score=63.04 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--CCcEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA--EVPFIS 395 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el--gvpfi~ 395 (731)
|+-++++|+||+|||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 5679999999999999999999999 666643
No 317
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.27 E-value=0.0015 Score=74.66 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=54.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh------hcc--------chHHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~------vG~--------~~~~vr~lF~~A~~~ 423 (731)
|..+..-+||+|+||+|||+|+..+|... +.+.++++..+-.+.. .|. .+..+.++...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45666679999999999999999997754 4577888775443321 111 112345556666677
Q ss_pred CCeEEEEcccchhhc
Q 004770 424 APSIIFIDEIDAVAK 438 (731)
Q Consensus 424 aP~ILfIDEIDaL~~ 438 (731)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998854
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=97.27 E-value=0.0015 Score=71.79 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------HHhh---c----------cchHHHHHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELYV---G----------MGASRVRDLFARA 420 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~-------~~~v---G----------~~~~~vr~lF~~A 420 (731)
.|.-++|+||||+||||++..+|..+ +..+..+.+..+. ..+. | .....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 47789999999999999888888754 4555555543221 1111 1 0012234444555
Q ss_pred HhcCCeEEEEcccchh
Q 004770 421 KKEAPSIIFIDEIDAV 436 (731)
Q Consensus 421 ~~~aP~ILfIDEIDaL 436 (731)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555569999987554
No 319
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.24 E-value=0.0039 Score=68.74 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=91.8
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH------h
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL------Y 405 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~------~ 405 (731)
..|.+.+...+.|..++- ......|..+.|+|-.|||||.+.+++.++++.+.+.+++-+.... .
T Consensus 6 ~~v~~Re~qi~~L~~Llg---------~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLG---------NNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhC---------CCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 356677777777766542 1123578889999999999999999999999999999988765431 0
Q ss_pred ---h------cc----chHHH---HHHHHH--HHhcC--CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC
Q 004770 406 ---V------GM----GASRV---RDLFAR--AKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (731)
Q Consensus 406 ---v------G~----~~~~v---r~lF~~--A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 465 (731)
+ |. ....+ ..+|.+ +..+. .-.|++|.+|.+... + .-.++.++..-.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~-~-----------a~ll~~l~~L~e- 143 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM-D-----------AILLQCLFRLYE- 143 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc-c-----------hHHHHHHHHHHH-
Confidence 0 00 01122 223333 22222 447889999998521 1 123333333221
Q ss_pred CCCCCcEEEEEEcCCCCCCCccccCCCccc-eEEEeeCCCHHHHHHHHHHHH
Q 004770 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFD-RVVMVETPDKIGREAILKVHV 516 (731)
Q Consensus 466 ~~~~~~VIVIaATN~pd~LDpALlRpGRFd-r~I~v~~Pd~~eR~eILk~~l 516 (731)
.-....+.+|...-..+ +--+.+.|-++ -.++||.|+.++..+|+..--
T Consensus 144 l~~~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 144 LLNEPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HhCCCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 11122333333222111 11222233443 357889999999988876543
No 320
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.23 E-value=0.0015 Score=66.21 Aligned_cols=97 Identities=27% Similarity=0.368 Sum_probs=51.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH----hhccchHHHHHHHHHHH---------hcCCeEEE
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGMGASRVRDLFARAK---------KEAPSIIF 429 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~----~vG~~~~~vr~lF~~A~---------~~aP~ILf 429 (731)
+-.+|.||||||||++++.++..+ +..++.+....-... ..+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 458889999999999999986543 667776655422211 11111222222222111 12236999
Q ss_pred EcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
|||+-.+. ...+..++..+.. ...++++++-.+
T Consensus 99 VDEasmv~---------------~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 99 VDEASMVD---------------SRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ESSGGG-B---------------HHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred EecccccC---------------HHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 99997663 2345666666653 235677777655
No 321
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.23 E-value=0.0021 Score=69.85 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=94.1
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHH-H--HhcCCcEEEeechhhHHH-----
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV-A--GEAEVPFISCSASEFVEL----- 404 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAl-A--~elgvpfi~is~se~~~~----- 404 (731)
.+.|..+..+.|.+++..-.. ......|+++||.|+|||+|.... + ++.|-+|+.+....++..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 356777777777777754111 123457999999999999865543 3 367777877765433321
Q ss_pred ----------------hhccchHHHHHHHHHHHh-----cCCeEEEEcccchhhcccCCcccccchHHHHHHH-HHHHHh
Q 004770 405 ----------------YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTE 462 (731)
Q Consensus 405 ----------------~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L-n~LL~e 462 (731)
..|.....+..++...+. ..+.|.++||||-+.+.. +|++ ..++..
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfDi 164 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHHH
Confidence 112223333333333322 223355567999876431 2332 233322
Q ss_pred hcCCCCCCcEEEEEEcCCCCCC---CccccCCCccceE-EEeeC-CCHHHHHHHHHHHH
Q 004770 463 MDGFDSNSAVIVLGATNRSDVL---DPALRRPGRFDRV-VMVET-PDKIGREAILKVHV 516 (731)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~L---DpALlRpGRFdr~-I~v~~-Pd~~eR~eILk~~l 516 (731)
-. ..+.+|.||+-|.+.+.+ ...+.+ ||... |++.+ .+..+..++++..+
T Consensus 165 sq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 165 SQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 22 235788899988877654 566666 89755 55543 35788888888877
No 322
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.22 E-value=0.00022 Score=69.79 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=36.5
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeechhh
Q 004770 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 401 (731)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp---fi~is~se~ 401 (731)
++|.++..++|...+.. . ....++.++|+|++|+|||+|++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888877777666541 1 23456789999999999999999998766333 777777655
No 323
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00097 Score=66.46 Aligned_cols=40 Identities=30% Similarity=0.612 Sum_probs=32.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG 407 (731)
+++.|+|++|+||||+.+++|+.++.+|+..+ ..++...|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g 42 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG 42 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC
Confidence 46999999999999999999999999998654 44444433
No 324
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0011 Score=70.12 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=31.7
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..+.-+.+.......+...+ .+ ..-++++||+|||||+||.++|.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al---~~-----------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAI---ES-----------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHH---hc-----------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34445566666555544433 22 125999999999999999999885
No 325
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.21 E-value=0.00059 Score=65.17 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=31.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG 407 (731)
+|+|+|+||+|||++|+.+|..++.+++..+ .+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3899999999999999999999999987544 45444433
No 326
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.20 E-value=0.0025 Score=70.62 Aligned_cols=162 Identities=20% Similarity=0.250 Sum_probs=82.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechhhHHHhh--------ccc-------hH---HHHHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFVELYV--------GMG-------AS---RVRDLFARAK 421 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--fi~is~se~~~~~v--------G~~-------~~---~vr~lF~~A~ 421 (731)
-.+|+|++|||.-|||||+|.-.+-..+... =-.+...+|+-..- ..+ .+ ..-.....-.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 4569999999999999999999887654210 01111222221100 000 00 0000111111
Q ss_pred hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC-CCCCccccCCCccceEEEe
Q 004770 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMV 500 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p-d~LDpALlRpGRFdr~I~v 500 (731)
...-++|++||+.-- +-..--+|+.|...+= +.+|+++||+|++ +.|-..=+ .|...+
T Consensus 191 a~ea~lLCFDEfQVT------------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGl-----QR~~F~ 249 (467)
T KOG2383|consen 191 AEEAILLCFDEFQVT------------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGL-----QRENFI 249 (467)
T ss_pred hhhceeeeechhhhh------------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcch-----hhhhhh
Confidence 223469999998542 1111234555555543 3589999999985 33322211 222222
Q ss_pred eCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC-C--CC-HHHHHHHHHHHH
Q 004770 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT-G--FT-GADLANLVNEAA 552 (731)
Q Consensus 501 ~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~-G--~S-gadL~~Lv~eAa 552 (731)
| -..+|+.++.- +.++..+|....+.... + |. ..|...++++--
T Consensus 250 P------fI~~L~~rc~v--i~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 250 P------FIALLEERCKV--IQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h------HHHHHHHhheE--EecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 2 23566666643 34566677773322111 1 22 337777776655
No 327
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.19 E-value=0.0011 Score=62.92 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=40.4
Q ss_pred ccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+.|.|++-+++.+...+.. +.++ .-+.|.-+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3699999999988777765 4442 13445556699999999999999999985
No 328
>PRK13947 shikimate kinase; Provisional
Probab=97.18 E-value=0.00036 Score=68.25 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
+|+|.|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 329
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.16 E-value=0.00052 Score=68.80 Aligned_cols=72 Identities=25% Similarity=0.380 Sum_probs=46.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeech-hhHH---Hh----------hccchHHHHHHHHHHHhcCCe
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFVE---LY----------VGMGASRVRDLFARAKKEAPS 426 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~s-e~~~---~~----------vG~~~~~vr~lF~~A~~~aP~ 426 (731)
+....++|.||+|+|||++++++++... ...+.+... ++.. .+ .+.....+.++++.+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3456799999999999999999998753 122222111 1100 00 011223466777778888899
Q ss_pred EEEEcccc
Q 004770 427 IIFIDEID 434 (731)
Q Consensus 427 ILfIDEID 434 (731)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999983
No 330
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.16 E-value=0.0019 Score=68.09 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeec
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~ 398 (731)
|..+..-++|.||||+|||+++..+|..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45666679999999999999999887653 667766665
No 331
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.13 E-value=0.0011 Score=73.07 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC----cEEEee-chhhHH---------HhhccchHHHHHHHHHHHhcCCeEEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCS-ASEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFI 430 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgv----pfi~is-~se~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfI 430 (731)
...+|++||+|+||||+.+++.+...- .++.+. ..++.. .-+|.......+.++.+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 346899999999999999999986642 233331 112110 012222234566777777889999999
Q ss_pred cccc
Q 004770 431 DEID 434 (731)
Q Consensus 431 DEID 434 (731)
||+.
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9983
No 332
>PRK10867 signal recognition particle protein; Provisional
Probab=97.13 E-value=0.0064 Score=69.10 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=46.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHH----------------hh---c-cchHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL----------------YV---G-MGASRVRDLF 417 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~~~~----------------~v---G-~~~~~vr~lF 417 (731)
..+|.-++++||+|+||||++..+|..+ |..+..+++..+... +. + ......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999777777643 566666666533220 00 0 1122233455
Q ss_pred HHHHhcCCeEEEEcccch
Q 004770 418 ARAKKEAPSIIFIDEIDA 435 (731)
Q Consensus 418 ~~A~~~aP~ILfIDEIDa 435 (731)
+.++.....+|+||=.-.
T Consensus 177 ~~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 566666667899886543
No 333
>PRK09354 recA recombinase A; Provisional
Probab=97.13 E-value=0.0019 Score=71.23 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=49.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHHH-h---hc------------cchHHHHHHHHHHH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~se~~~~-~---vG------------~~~~~vr~lF~~A~ 421 (731)
|.+..+-++|+||||||||+||-.++.+ .+...++++..+-.+. + .| ..+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4555667889999999999999987654 3677777776543221 0 01 11112222222334
Q ss_pred hcCCeEEEEcccchhhc
Q 004770 422 KEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (731)
...+.+|+||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999998875
No 334
>PRK04296 thymidine kinase; Provisional
Probab=97.12 E-value=0.0022 Score=64.68 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=41.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec--h--hhHH---Hhhccc-----hHHHHHHHHHHH--hcCCeEEE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA--S--EFVE---LYVGMG-----ASRVRDLFARAK--KEAPSIIF 429 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~--s--e~~~---~~vG~~-----~~~vr~lF~~A~--~~aP~ILf 429 (731)
-.+++||||+|||+++..++.++ +..++.+.. . .... ...|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 555555532 1 1100 011110 112334444443 34567999
Q ss_pred Ecccchh
Q 004770 430 IDEIDAV 436 (731)
Q Consensus 430 IDEIDaL 436 (731)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999654
No 335
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.12 E-value=0.00046 Score=74.72 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeec-hhhH-------HHhhccchHHHHHHHHHHHhcCCeEEEEc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA-SEFV-------ELYVGMGASRVRDLFARAKKEAPSIIFID 431 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~-se~~-------~~~vG~~~~~vr~lF~~A~~~aP~ILfID 431 (731)
.+++|++||+|+|||++++++++.. +..++.+.- .++. ..........+.++++.+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4579999999999999999999875 233333321 1111 00111222257788888889999999999
Q ss_pred ccc
Q 004770 432 EID 434 (731)
Q Consensus 432 EID 434 (731)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 336
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.12 E-value=0.00097 Score=77.78 Aligned_cols=29 Identities=41% Similarity=0.661 Sum_probs=25.3
Q ss_pred hCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
+..++...+|+.||+|||||+|.||+|+-
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34567778999999999999999999984
No 337
>PRK05973 replicative DNA helicase; Provisional
Probab=97.11 E-value=0.0032 Score=66.05 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
|..+..-++|.|+||+|||+++-.+|.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45566679999999999999998887654 7777776654
No 338
>PRK13948 shikimate kinase; Provisional
Probab=97.11 E-value=0.0011 Score=66.83 Aligned_cols=43 Identities=30% Similarity=0.491 Sum_probs=35.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG 407 (731)
++|..|+|+|.+|+|||++++.+|+.++.+|+..+ .+++...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 46688999999999999999999999999998554 45554444
No 339
>PRK03839 putative kinase; Provisional
Probab=97.11 E-value=0.00041 Score=68.78 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997653
No 340
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.10 E-value=0.0032 Score=64.80 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~ 387 (731)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999983
No 341
>PRK00625 shikimate kinase; Provisional
Probab=97.09 E-value=0.00049 Score=68.73 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
+|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998764
No 342
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.09 E-value=0.0053 Score=63.04 Aligned_cols=109 Identities=20% Similarity=0.212 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh------c--------c-------chH----H
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------G--------M-------GAS----R 412 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v------G--------~-------~~~----~ 412 (731)
|.+....+++.|+||+|||+++..++.+. +.+.++++..+-.+... | . ... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 55566779999999999999999887543 67777776543332100 0 0 000 0
Q ss_pred HHH----HHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 413 VRD----LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 413 vr~----lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
+.+ +........++.++||-+..+... .....+..+.+..++..+.. .++.++.+++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~------~~~~~~~r~~l~~l~~~lk~----~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL------FDDDAERRTELFRFYSSLRE----TGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh------cCCHHHHHHHHHHHHHHHHh----CCCEEEEEEc
Confidence 111 112223456788999988877211 11233445566777777652 2344444443
No 343
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.08 E-value=0.00076 Score=67.04 Aligned_cols=27 Identities=41% Similarity=0.673 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPF 393 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el---gvpf 393 (731)
+++|+|+||+||||+++.++.++ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999999887 5543
No 344
>PRK13946 shikimate kinase; Provisional
Probab=97.07 E-value=0.0014 Score=65.49 Aligned_cols=34 Identities=35% Similarity=0.624 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
.++.|+|+|+||+|||++++.+|+.+|.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4568999999999999999999999999998765
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.07 E-value=0.0032 Score=60.58 Aligned_cols=101 Identities=26% Similarity=0.382 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeech---hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchh
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSAS---EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--fi~is~s---e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (731)
..+...+.|.||+|+|||+|++++++..... -+.++.. .++..+. +..+-+-.+..|....|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~~- 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPTN- 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcc-
Confidence 4556679999999999999999999975210 0111110 0000011 122334445666677899999999643
Q ss_pred hcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
+.+......+.+++.++. . .+|.+|+.++
T Consensus 100 ----------~LD~~~~~~l~~~l~~~~------~-til~~th~~~ 128 (144)
T cd03221 100 ----------HLDLESIEALEEALKEYP------G-TVILVSHDRY 128 (144)
T ss_pred ----------CCCHHHHHHHHHHHHHcC------C-EEEEEECCHH
Confidence 233344455555666541 1 4555666554
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0016 Score=63.02 Aligned_cols=108 Identities=26% Similarity=0.344 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechhhH-------HHhhc-----cchHHHHHHHHHHHhcCCeE
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFV-------ELYVG-----MGASRVRDLFARAKKEAPSI 427 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--fi~is~se~~-------~~~vG-----~~~~~vr~lF~~A~~~aP~I 427 (731)
..+...+.|.||+|+|||+|++++++..... -+.++..... ...++ .+..+.+-.+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 3445679999999999999999999976421 1222221110 01111 11233344456666677889
Q ss_pred EEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
+++||... +.+......+.+++.++.. . +..++.+|+..+.+
T Consensus 102 ~ilDEp~~-----------~lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 102 LLLDEPTS-----------GLDPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred EEEeCCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 99999754 2333344555666665532 1 23455566655443
No 347
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.05 E-value=0.00061 Score=67.45 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.+-++|.|+||+|||++|++++.+++.+++.++...+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 356899999999999999999999998888776665544
No 348
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.002 Score=63.47 Aligned_cols=107 Identities=24% Similarity=0.330 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechhhH--------H----------Hhh-------ccchHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFV--------E----------LYV-------GMGASRVR 414 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--fi~is~se~~--------~----------~~v-------G~~~~~vr 414 (731)
..+...+.|.||+|+|||+|.+.+++..... -+.+++.... . .+. =.+..+-+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 4556679999999999999999999975210 0112111110 0 000 00112233
Q ss_pred HHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
-.+..|-...|.++++||--+ +.+......+.+++.++. . +..+|.+|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~-----------gLD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATS-----------ALDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCc-----------CCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 345666677899999999643 234444556666666653 1 24556667766544
No 349
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.02 E-value=0.0018 Score=65.90 Aligned_cols=108 Identities=25% Similarity=0.378 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------HHh---hc----------cchHHHHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG----------MGASRVRDLFARAK 421 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~-------~~~---vG----------~~~~~vr~lF~~A~ 421 (731)
|+-++|+||+|+||||.+-.+|..+ +..+--+++..+. ..| .+ .....+++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6679999999999999888887754 4444333333221 111 11 11223455566665
Q ss_pred hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 004770 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (731)
...-.+|+||-.-.. ..+.+..+-+..++..+ .+..-++|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~----------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS----------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS----------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc----------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 555569999875321 12223334444555554 2333455666655555444
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.01 E-value=0.0049 Score=61.76 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=67.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------------cEEEeechhhHHHhh------c------cchHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------PFISCSASEFVELYV------G------MGASRVRDL 416 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-------------pfi~is~se~~~~~v------G------~~~~~vr~l 416 (731)
..++.-+.|.||+|+|||||.++++...|- ++..+.-.++++.+- . .+..+.+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 445566899999999999999999743321 122222112222111 0 012344555
Q ss_pred HHHHHhcC--CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCcc
Q 004770 417 FARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (731)
Q Consensus 417 F~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRF 494 (731)
+..|.... |.++++||--. +.+....+.+.+++.++.. .+..||.+|..++.+ + ..
T Consensus 98 laral~~~~~p~llLlDEPt~-----------~LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~~~-----~--~~ 155 (176)
T cd03238 98 LASELFSEPPGTLFILDEPST-----------GLHQQDINQLLEVIKGLID----LGNTVILIEHNLDVL-----S--SA 155 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcc-----------cCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-----H--hC
Confidence 66666778 89999999743 2344445555666665531 233455566655432 2 34
Q ss_pred ceEEEeeC
Q 004770 495 DRVVMVET 502 (731)
Q Consensus 495 dr~I~v~~ 502 (731)
|+.+.+..
T Consensus 156 d~i~~l~~ 163 (176)
T cd03238 156 DWIIDFGP 163 (176)
T ss_pred CEEEEECC
Confidence 66766643
No 351
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.01 E-value=0.022 Score=69.84 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=85.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech--h-----hHHH----h----hcc---c------------hHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS--E-----FVEL----Y----VGM---G------------ASRVR 414 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s--e-----~~~~----~----vG~---~------------~~~vr 414 (731)
.+-++++||+|.|||+++...+...+ ++.-++.. + |... . .+. . ...+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34599999999999999999887766 55444432 1 1110 0 000 0 01122
Q ss_pred HHHHHHHh-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCc-cccCCC
Q 004770 415 DLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP-ALRRPG 492 (731)
Q Consensus 415 ~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDp-ALlRpG 492 (731)
.++..... ..|.+|+|||+|.+. +......+..|+..+. ....+|| ++.....++- .+...
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~-----------~~~~~~~l~~l~~~~~----~~~~lv~-~sR~~~~~~~~~l~~~- 173 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT-----------NPEIHEAMRFFLRHQP----ENLTLVV-LSRNLPPLGIANLRVR- 173 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC-----------ChHHHHHHHHHHHhCC----CCeEEEE-EeCCCCCCchHhHHhc-
Confidence 23333222 578999999999863 1223345555555432 2233444 4433212221 11111
Q ss_pred ccceEEEee----CCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHH
Q 004770 493 RFDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (731)
Q Consensus 493 RFdr~I~v~----~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~L 547 (731)
+..+.+. ..+.+|-.+++...+. .++.+ .+...+.+.|.|+ +.-+..+
T Consensus 174 --~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~-~~~~~l~~~t~Gw-p~~l~l~ 225 (903)
T PRK04841 174 --DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIEA-AESSRLCDDVEGW-ATALQLI 225 (903)
T ss_pred --CcceecCHHhCCCCHHHHHHHHHhccC---CCCCH-HHHHHHHHHhCCh-HHHHHHH
Confidence 2344555 5678888888776543 23333 3577889999995 4445433
No 352
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.01 E-value=0.0071 Score=62.22 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=29.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeec
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~ 398 (731)
|......++|+||||+|||+|+..++.+ .+-+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5667778999999999999999987653 2556666664
No 353
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.006 Score=68.34 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH----H---Hh---------hccchHHHHHHHHHHHh-c
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----E---LY---------VGMGASRVRDLFARAKK-E 423 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~----~---~~---------vG~~~~~vr~lF~~A~~-~ 423 (731)
.|+.++|+||+|+||||++..+|..+ +..+..+++..+. + .| +...+..+.+.+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46789999999999999999999865 3444444443221 1 11 12344556666666554 2
Q ss_pred CCeEEEEcccch
Q 004770 424 APSIIFIDEIDA 435 (731)
Q Consensus 424 aP~ILfIDEIDa 435 (731)
...+||||-.-.
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 346999997543
No 354
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.01 E-value=0.0028 Score=65.50 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~s 399 (731)
|..+..-++|.|+||+|||+++..++..+ +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 66677779999999999999998886643 7787777743
No 355
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.00 E-value=0.00061 Score=67.36 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
|+|+||||+|||++|+.+|.+.+++. ++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHHH
Confidence 78999999999999999999998654 555566544
No 356
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.00 E-value=0.0017 Score=77.80 Aligned_cols=70 Identities=26% Similarity=0.363 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCcccc
Q 004770 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR 489 (731)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALl 489 (731)
.++-|-++.+|-...|.||++||.-+ ..+.+.++.+.+-|.++.. +..+|..|.++..+
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTS-----------aLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~ti----- 671 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATS-----------ALDPETEAIILQNLLQILQ-----GRTVIIIAHRLSTI----- 671 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCccc-----------ccCHhHHHHHHHHHHHHhc-----CCeEEEEEccchHh-----
Confidence 34556666777778899999999732 3566667777777777652 23455566765433
Q ss_pred CCCccceEEEeeC
Q 004770 490 RPGRFDRVVMVET 502 (731)
Q Consensus 490 RpGRFdr~I~v~~ 502 (731)
+ +.|+.+.++.
T Consensus 672 ~--~adrIiVl~~ 682 (709)
T COG2274 672 R--SADRIIVLDQ 682 (709)
T ss_pred h--hccEEEEccC
Confidence 3 5677777654
No 357
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.99 E-value=0.0039 Score=61.85 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechhhH------HH---h----------------hc--cchHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFV------EL---Y----------------VG--MGASR 412 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se~~------~~---~----------------vG--~~~~~ 412 (731)
..++..+.|.||+|+|||+|++.+++.... --+.+++.+.. .. | .. .+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 455667999999999999999999997521 11222221110 00 0 00 01233
Q ss_pred HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 413 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
.+-.+..|-...|.++++||--. +.+....+.+.+++.++. +. ..+|.+|+.++.+
T Consensus 105 qrv~laral~~~p~~lllDEP~~-----------~LD~~~~~~l~~~l~~~~----~~-~tii~~sh~~~~~ 160 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTV-----------GLDPITERQLLSLIFEVL----KD-KTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc-----------cCCHHHHHHHHHHHHHHc----CC-CEEEEEecCHHHH
Confidence 44456666678899999999643 234444566667776653 12 3455566655433
No 358
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.98 E-value=0.0031 Score=66.00 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777777654533
No 359
>PRK14532 adenylate kinase; Provisional
Probab=96.98 E-value=0.00069 Score=67.56 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
.++|.||||+|||++|+.+|+..+++++ +..+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHHH
Confidence 4899999999999999999999987664 555665543
No 360
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00062 Score=66.17 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
.++|++|-||||||+|+.++|...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 46999999999999999999999999998764
No 361
>PHA02774 E1; Provisional
Probab=96.97 E-value=0.0039 Score=72.49 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=26.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEE-ee
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CS 397 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~-is 397 (731)
.+++|+||||||||++|.+|++.++-..+. ++
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 479999999999999999999998654443 44
No 362
>PRK14531 adenylate kinase; Provisional
Probab=96.95 E-value=0.00084 Score=67.07 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..++++||||+|||++++.+|...|+++++ .++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHHH
Confidence 459999999999999999999999988754 455554
No 363
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.95 E-value=0.005 Score=61.32 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.++.--++|+||+|+||++|.|++|.-
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 445566999999999999999999984
No 364
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.94 E-value=0.0045 Score=61.65 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=55.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh-----------------ccchHHHHHHHHHHHhcCCeEEE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV-----------------GMGASRVRDLFARAKKEAPSIIF 429 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v-----------------G~~~~~vr~lF~~A~~~aP~ILf 429 (731)
.+|+.||||+|||++|..++.+.+.+++++......+.-. -+....+.++++.. ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4899999999999999999999888877776543221100 00011233333221 12355899
Q ss_pred EcccchhhcccCCcccccchHHHHHHHHHHHHhhcC
Q 004770 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (731)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 465 (731)
||-+..+....-.. ...+.....+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~---~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE---EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc---cchHHHHHHHHHHHHHHHc
Confidence 99998886433110 0002234456667776653
No 365
>PLN02200 adenylate kinase family protein
Probab=96.94 E-value=0.001 Score=69.60 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=34.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
+.+.|..++|.||||+|||++|+.+|.++|++ .++.++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 35567789999999999999999999999876 4666777654
No 366
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.94 E-value=0.0028 Score=68.81 Aligned_cols=35 Identities=37% Similarity=0.657 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
..++..|+|+|+||+|||++++.+|..+|++|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45677899999999999999999999999999943
No 367
>PLN02674 adenylate kinase
Probab=96.93 E-value=0.0034 Score=66.10 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
+++..++|.||||+||||+|+.+|...+++. ++..+++...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~~ 69 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRAA 69 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHHH
Confidence 4456799999999999999999999998765 4556665543
No 368
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.92 E-value=0.0043 Score=61.75 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=55.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH-----HH---h---------hccchHHHHHHHHHHHhcCCeEEEE
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV-----EL---Y---------VGMGASRVRDLFARAKKEAPSIIFI 430 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~-----~~---~---------vG~~~~~vr~lF~~A~~~aP~ILfI 430 (731)
+|++|++|+|||++|..++.+.+.+.+++....-. .. + ..+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998877788777544322 11 0 0112223444442222 4669999
Q ss_pred cccchhhcccCCcccccc--hHHHHHHHHHHHHhhc
Q 004770 431 DEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMD 464 (731)
Q Consensus 431 DEIDaL~~~r~~~~~~~~--~~e~~~~Ln~LL~emd 464 (731)
|-+..+....-.. ... .+...+.+..|+..+.
T Consensus 80 Dclt~~~~n~l~~--~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFA--DLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCC--ccccchhHHHHHHHHHHHHHH
Confidence 9998876543211 000 0222345566777665
No 369
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.92 E-value=0.0047 Score=61.92 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 004770 368 VLLVGLPGTGKTLLAKAVA 386 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA 386 (731)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 370
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.92 E-value=0.012 Score=62.01 Aligned_cols=133 Identities=16% Similarity=0.261 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC---cEEEeech--hhHHHhh-----cc--ch-------HH----HHHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSAS--EFVELYV-----GM--GA-------SR----VRDLFAR 419 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgv---pfi~is~s--e~~~~~v-----G~--~~-------~~----vr~lF~~ 419 (731)
..|-.+++.|++|+|||+|++.+.....- .++.+... .....|+ .. .. .+ +.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 45567999999999999999999876532 22222211 1111111 00 00 01 1112111
Q ss_pred HHh---cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccce
Q 004770 420 AKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (731)
Q Consensus 420 A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 496 (731)
... ..+++|+||++-. . ....+.+.+++.. ..+-++-+|..+.....||+.++. -.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~----------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K----------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c----------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceE
Confidence 111 2367999999621 1 1223455666653 234567788888888889999865 5666
Q ss_pred EEEeeCCCHHHHHHHHHHH
Q 004770 497 VVMVETPDKIGREAILKVH 515 (731)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~ 515 (731)
.+.+. -+..+.+.|++.+
T Consensus 152 ~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEec-CcHHHHHHHHHhc
Confidence 66554 4566655555544
No 371
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.92 E-value=0.0023 Score=68.03 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=57.0
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEee-chhhHHH
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEFVEL 404 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---vpfi~is-~se~~~~ 404 (731)
.+++++.-.++..+.|++++. .....+++.||+|+|||++++++..+.. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 467777655555555544432 1123489999999999999999987663 2344442 1111100
Q ss_pred -----hh-ccchHHHHHHHHHHHhcCCeEEEEcccc
Q 004770 405 -----YV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (731)
Q Consensus 405 -----~v-G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (731)
.+ ........++++.+....|.+|+|+|+.
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 1111235667777788899999999984
No 372
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.92 E-value=0.014 Score=59.54 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi 394 (731)
+.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 456899999999999999999999988653
No 373
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.92 E-value=0.0041 Score=61.20 Aligned_cols=103 Identities=29% Similarity=0.443 Sum_probs=59.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------cEEEee---------chhhHHH-hhc--cchHHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------PFISCS---------ASEFVEL-YVG--MGASRVRDLFA 418 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-----------pfi~is---------~se~~~~-~vG--~~~~~vr~lF~ 418 (731)
..+...+.|.||+|+|||+|++.+++.... .+.++. ..+.+.. ... .+..+.+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 455667999999999999999999997521 011111 0111100 000 12234455566
Q ss_pred HHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
.|....|.++++||-.. +.+....+.+.+++.++ +..+|.+|++++
T Consensus 104 ral~~~p~~lllDEPt~-----------~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLLHKPKFVFLDEATS-----------ALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHcCCCEEEEECCcc-----------ccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 67778899999999643 23444455566666654 124555666553
No 374
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.91 E-value=0.0008 Score=63.54 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
+.|+|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.91 E-value=0.0068 Score=64.24 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~s 399 (731)
|......++++||||||||+|+..+|.+ .|-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5566777999999999999999988664 25566666643
No 376
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.91 E-value=0.0011 Score=72.70 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=48.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEee-chhhHH--------Hh-----hccchHHHHHHHHHHHhcCCe
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE--------LY-----VGMGASRVRDLFARAKKEAPS 426 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is-~se~~~--------~~-----vG~~~~~vr~lF~~A~~~aP~ 426 (731)
+..+++|++||+|+|||+++++++....- .++.+. ..++.- .. .+...-...++++.+....|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 34567999999999999999999987642 233221 111110 00 112223467888899999999
Q ss_pred EEEEcccc
Q 004770 427 IIFIDEID 434 (731)
Q Consensus 427 ILfIDEID 434 (731)
.|++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999984
No 377
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.0024 Score=66.23 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=44.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc--------CCcEEEeech-hhHHHhhcc-------------chHHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSAS-EFVELYVGM-------------GASRVRDLFARAKKE 423 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el--------gvpfi~is~s-e~~~~~vG~-------------~~~~vr~lF~~A~~~ 423 (731)
.+.||.||||||||++.|-+|.-+ +..+..++-+ +......|. ..-+-.-+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 469999999999999999998854 2334444432 222211111 111223345566788
Q ss_pred CCeEEEEcccch
Q 004770 424 APSIIFIDEIDA 435 (731)
Q Consensus 424 aP~ILfIDEIDa 435 (731)
.|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999954
No 378
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.90 E-value=0.0049 Score=60.91 Aligned_cols=105 Identities=24% Similarity=0.378 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh--------hHHH--hh---------------ccchHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVEL--YV---------------GMGASRVRD 415 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se--------~~~~--~v---------------G~~~~~vr~ 415 (731)
.....+.|.||+|+|||+|.+.+++.... --+.+++.+ +... |+ =.+..+-+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 44556899999999999999999986421 001111111 0000 00 012233455
Q ss_pred HHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 416 LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 416 lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
.+..|....|.++++||--. +.+....+.+.+++..+.. .+..+|.+|+..+
T Consensus 106 ~la~al~~~p~~lllDEPt~-----------~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 106 GLARALYGNPRILVLDEPNS-----------HLDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHhcCCCEEEEECCcc-----------ccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 56677778899999999643 2444555666666666532 1334555666554
No 379
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0014 Score=65.76 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.|+|.||||+||||+|+.||+. .++..++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 4899999999999999999999 4555566555544
No 380
>PRK06696 uridine kinase; Validated
Probab=96.89 E-value=0.0014 Score=67.57 Aligned_cols=41 Identities=32% Similarity=0.478 Sum_probs=35.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
..|.-|.+.|++|+||||||+.|+..+ |.+++.++..+|..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 356679999999999999999999988 78888888877753
No 381
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.88 E-value=0.0067 Score=69.94 Aligned_cols=78 Identities=26% Similarity=0.272 Sum_probs=54.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh------cc----------------------c
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM----------------------G 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v------G~----------------------~ 409 (731)
|..+...+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. |. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 55666779999999999999999998754 66777777654433111 10 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcccchhhc
Q 004770 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (731)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23445555666677899999999988753
No 382
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0083 Score=67.74 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASE 400 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se 400 (731)
.+.-++|+||+|+||||++..+|... |..+..+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 45568999999999999999999754 44444444433
No 383
>PRK06217 hypothetical protein; Validated
Probab=96.87 E-value=0.00095 Score=66.61 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
.|+|.|+||+|||++|++++..+++|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4999999999999999999999999987654
No 384
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.86 E-value=0.0015 Score=70.80 Aligned_cols=74 Identities=23% Similarity=0.443 Sum_probs=49.6
Q ss_pred hhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechhhHHHh---------------hccchHHHHHHHHHHH
Q 004770 359 RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFVELY---------------VGMGASRVRDLFARAK 421 (731)
Q Consensus 359 ~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se~~~~~---------------vG~~~~~vr~lF~~A~ 421 (731)
.+-.+...+++++||+|+|||+|++++++.... ..+.+. +..+.. .+...-.+.+++..+.
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh
Confidence 334556678999999999999999999987632 222221 111100 0111234567888888
Q ss_pred hcCCeEEEEcccc
Q 004770 422 KEAPSIIFIDEID 434 (731)
Q Consensus 422 ~~aP~ILfIDEID 434 (731)
...|.+|++||+-
T Consensus 216 r~~pd~ii~gE~r 228 (308)
T TIGR02788 216 RMRPDRIILGELR 228 (308)
T ss_pred cCCCCeEEEeccC
Confidence 8999999999984
No 385
>PRK13764 ATPase; Provisional
Probab=96.85 E-value=0.0016 Score=76.54 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEee-chhhH-----HHhhccchHHHHHHHHHHHhcCCeEEEEcccc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEFV-----ELYVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg---vpfi~is-~se~~-----~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (731)
..++|++||||+||||++++++..+. ..+..+. ..++. ..|... ........+.+....|.+|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCC
Confidence 56899999999999999999998764 2222221 11111 111100 0112233333456789999999974
No 386
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.85 E-value=0.004 Score=74.99 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHHH----hhcc------------chHHHHHHHHHHH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL----YVGM------------GASRVRDLFARAK 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~se~~~~----~vG~------------~~~~vr~lF~~A~ 421 (731)
|......++|+||||||||+|+..++.+ .|-+.++++..+-... -.|. .+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4566677999999999999999765543 3667777765543220 0111 1111111222234
Q ss_pred hcCCeEEEEcccchhhcccC--CcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
...+.+|+||-+.++....+ +......-....+.++++|..|..+-...++.+|.|-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45789999999999985211 1100011123344455666655555444566666553
No 387
>PRK14530 adenylate kinase; Provisional
Probab=96.84 E-value=0.0011 Score=67.78 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
.|+|.||||+||||+++.||..++++++.+ .+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr~ 40 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALRA 40 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHHH
Confidence 599999999999999999999999877644 555443
No 388
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.84 E-value=0.0014 Score=71.65 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee-chhhHH------HhhccchHHHHHHHHHHHhcCCeEEEEc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVE------LYVGMGASRVRDLFARAKKEAPSIIFID 431 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is-~se~~~------~~vG~~~~~vr~lF~~A~~~aP~ILfID 431 (731)
..++++++|++|+|||+++++++.+. ...++.+. ..++.- .+.........++++.+....|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34679999999999999999999863 12233221 112110 0111122356788899999999999999
Q ss_pred ccc
Q 004770 432 EID 434 (731)
Q Consensus 432 EID 434 (731)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 983
No 389
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.84 E-value=0.00099 Score=66.22 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
|+|+||||+|||++|+.||.+.+++++. ..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHHH
Confidence 8999999999999999999999877654 5555543
No 390
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.84 E-value=0.0048 Score=61.86 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechh--hHHHhh-ccchHHHHHHHHHHHhcCCeEEEEcccchhh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASE--FVELYV-GMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--fi~is~se--~~~~~v-G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (731)
.+...+.|.||+|+|||||++.+++..... -+.+++.. +..... =.+..+-+-.+..|....|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts-- 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA-- 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc--
Confidence 445568899999999999999999865210 11111110 000000 11223444456666777899999999643
Q ss_pred cccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
+.+....+.+.+++.++. .+.+..+|.+|...
T Consensus 101 ---------~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~ 132 (177)
T cd03222 101 ---------YLDIEQRLNAARAIRRLS---EEGKKTALVVEHDL 132 (177)
T ss_pred ---------cCCHHHHHHHHHHHHHHH---HcCCCEEEEEECCH
Confidence 233444445555555542 11213444455544
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.84 E-value=0.001 Score=63.67 Aligned_cols=28 Identities=36% Similarity=0.763 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
++|+|+||+|||++|+.++..++.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998887654
No 392
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.83 E-value=0.0012 Score=68.75 Aligned_cols=39 Identities=23% Similarity=0.511 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..|..++|.||||+||||+|+.+|+.++++++++ .+++.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 3455699999999999999999999999887654 45544
No 393
>PRK04328 hypothetical protein; Provisional
Probab=96.83 E-value=0.011 Score=62.26 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~s 399 (731)
|.+....+|++||||||||+|+..++.+ .|-+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 5666777999999999999999887654 36677777653
No 394
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.83 E-value=0.0015 Score=71.52 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=47.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee-chhhHHH------hhccchHHHHHHHHHHHhcCCeEEEEcc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVEL------YVGMGASRVRDLFARAKKEAPSIIFIDE 432 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is-~se~~~~------~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (731)
.+++|++|++|+|||+++++++.+. +..++.+. ..++.-. +.....-...++++.+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 23333332 1122100 0011223467788888889999999999
Q ss_pred c
Q 004770 433 I 433 (731)
Q Consensus 433 I 433 (731)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 395
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.82 E-value=0.0014 Score=72.27 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeec-hhhHH-------H-h----hccchHHHHHHHHHHHhcCCe
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFVE-------L-Y----VGMGASRVRDLFARAKKEAPS 426 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~-se~~~-------~-~----vG~~~~~vr~lF~~A~~~aP~ 426 (731)
.+..+++|++||+|+|||++++++++.... .++.+.- .++.- . + .+...-...++++.+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 445678999999999999999999997642 2222211 11110 0 0 112223466788888889999
Q ss_pred EEEEcccc
Q 004770 427 IIFIDEID 434 (731)
Q Consensus 427 ILfIDEID 434 (731)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999983
No 396
>PRK13695 putative NTPase; Provisional
Probab=96.81 E-value=0.01 Score=58.65 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++|+|+||+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999988765
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.80 E-value=0.0057 Score=62.03 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~ 387 (731)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999983
No 398
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.80 E-value=0.0099 Score=65.02 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
..|.-++|+||+|+||||++..+|..+ +..+..+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 457789999999999999999999865 444444444
No 399
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.80 E-value=0.0042 Score=60.19 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7899999999999999999988 66777777665554
No 400
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.78 E-value=0.006 Score=66.03 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh-hH-----HH--hhccchH------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-FV-----EL--YVGMGAS------------ 411 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se-~~-----~~--~vG~~~~------------ 411 (731)
|...+.-++++||||+|||+|+-.+|..+ +-..++++..+ |. +. ..+....
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 45666778999999999999999998663 23677777654 11 00 0011100
Q ss_pred -------HHHHHHHHHHhc--CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 412 -------RVRDLFARAKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 412 -------~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
.+.++.+..... .+++|+||-|-++....-.+ .....++.+.+++++..+..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 112222233333 36799999988875432110 011223445566665555444444556666554
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.76 E-value=0.008 Score=60.91 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 004770 366 RGVLLVGLPGTGKTLLAKAVA 386 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA 386 (731)
+.++|+||.|+|||+|.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 402
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.76 E-value=0.0044 Score=66.53 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc----C-CcEEEeechh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASE 400 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el----g-vpfi~is~se 400 (731)
..++.++|+||+|+||||++..+|..+ + ..+..+++..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 346779999999999999999998755 3 5666666554
No 403
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.76 E-value=0.0062 Score=66.31 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhhH------HHh--hccch-------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEFV------ELY--VGMGA------------- 410 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se~~------~~~--vG~~~------------- 410 (731)
|...+.-++|+||||+|||.|+-.+|-.+ +...++++..+-+ +.. .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 46667778999999999999999998653 3367777665411 100 01100
Q ss_pred ------HHHHHHHHHHHh-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 411 ------SRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 411 ------~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
..+..+...... ..+++|+||=|-++....-.. .....++.+.+++++..+..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011112222223 467799999999886431110 0112234454666666554443445566665543
No 404
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.75 E-value=0.017 Score=66.49 Aligned_cols=44 Identities=30% Similarity=0.107 Sum_probs=36.4
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 004770 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 535 ~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~g 578 (731)
+|...+.+.|+.|++.|...|..+-...|+.+|-+.|++-+...
T Consensus 602 rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA 645 (818)
T KOG0479|consen 602 RTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFA 645 (818)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHH
Confidence 44456789999999999999998889999999999988765443
No 405
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0051 Score=72.53 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=24.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..++...+-|+||+|.|||++|.-+-+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567788999999999999999988763
No 406
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.74 E-value=0.0016 Score=64.72 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~ 398 (731)
++.|+|+||+|+|||++++.+|+.++++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999987653
No 407
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.73 E-value=0.0058 Score=66.70 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhh-H-H----H--hhccc--------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF-V-E----L--YVGMG-------------- 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se~-~-~----~--~vG~~-------------- 409 (731)
|.....-+.|+||||+|||.|+..+|-.. +...++++..+- . + . -.+..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 45666778899999999999998877422 346677765441 0 1 0 00110
Q ss_pred -h----HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 410 -A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 410 -~----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
. ..+..+-.......+.+|+||-|-++....-.+ .+.-.++.+.+++++..|..+....++.||.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 1 111222222234568899999999886532111 111223344566666655555444555565543
No 408
>PRK06547 hypothetical protein; Provisional
Probab=96.71 E-value=0.0017 Score=64.72 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
..+.-|++.|++|+|||++|+.+++.++++++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 4566789999999999999999999999887754
No 409
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0025 Score=65.19 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el 389 (731)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 410
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.71 E-value=0.0032 Score=64.46 Aligned_cols=30 Identities=40% Similarity=0.631 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
.|+++||||+|||++|+.+|..++++.+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999777654
No 411
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.71 E-value=0.0016 Score=63.75 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
+.++|+|+||+|||++++.+|..++.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 4589999999999999999999999999754
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.71 E-value=0.0081 Score=68.21 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se~ 401 (731)
.++.++|+||+|+||||++..+|..+ +..+..+++..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35679999999999999888887643 345666665543
No 413
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.70 E-value=0.0013 Score=63.94 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
++|+||||+|||++|+.+++.++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999877653
No 414
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0061 Score=60.20 Aligned_cols=106 Identities=23% Similarity=0.274 Sum_probs=60.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh-------hHH----------Hhhc---------cchHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-------FVE----------LYVG---------MGASRV 413 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se-------~~~----------~~vG---------~~~~~v 413 (731)
..+...+.|.||+|+|||+|++.+++.... --+.+++.+ +.. .+.+ .+..+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 344556999999999999999999996421 001111100 000 0111 112333
Q ss_pred HHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 414 RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 414 r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
+-.+..|....|.|+++||-.+ +.+......+.+++..+.. + +..+|.+|+.++
T Consensus 103 rv~laral~~~p~illlDEPt~-----------~LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTS-----------GLDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCcc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 4456667778899999999643 2344445566666666531 1 234555666543
No 415
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.69 E-value=0.0035 Score=69.86 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=45.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeech-hhH-----------HHhhccchHHHHHHHHHHHhcCCeEEE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS-EFV-----------ELYVGMGASRVRDLFARAKKEAPSIIF 429 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg-----vpfi~is~s-e~~-----------~~~vG~~~~~vr~lF~~A~~~aP~ILf 429 (731)
.+|++||+|+||||++++++++.. ...+.+.-. ++. ..-+|.......+.++.+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 334444211 211 111222223456677778888999999
Q ss_pred Ecccc
Q 004770 430 IDEID 434 (731)
Q Consensus 430 IDEID 434 (731)
++|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 416
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.67 E-value=0.0063 Score=60.59 Aligned_cols=28 Identities=39% Similarity=0.450 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..+...+.|.||+|+|||+|++.+++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455669999999999999999999864
No 417
>PHA02624 large T antigen; Provisional
Probab=96.66 E-value=0.0054 Score=71.60 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhccc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (731)
|.+..+.+||+||||||||+++++|++.++-..+.++++.-... |...-.....+++||++-.-+-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 34444589999999999999999999999666677775432111 222111122378888875332211
Q ss_pred C---CcccccchHHHHHHHHHHHHhhcCC-CC------CCcE-----EEEEEcCCCCCCCccccCCCccceEEEeeC
Q 004770 441 D---GRFRIVSNDEREQTLNQLLTEMDGF-DS------NSAV-----IVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (731)
Q Consensus 441 ~---~~~~~~~~~e~~~~Ln~LL~emdg~-~~------~~~V-----IVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (731)
. .+ .... -+.-|-..+||. .- ...+ -.|.|||. ..||..+.- ||-+++.|..
T Consensus 495 ~~Lp~G-~~~d------Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSG-QGMN------NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcc-cccc------hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 0 00 0011 112344445554 10 0111 24557775 467777776 8888887754
No 418
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.66 E-value=0.0063 Score=71.45 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=25.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..++...+.|+||+|+|||||++.+++..
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35566779999999999999999999865
No 419
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.65 E-value=0.0053 Score=65.71 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
++-++|.|+||+|||++|+.++.++. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 45688999999999999999999983 3445565666544
No 420
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.65 E-value=0.0037 Score=68.74 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=54.0
Q ss_pred cc-cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-CcEEEeechhhHHHhhcc
Q 004770 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSASEFVELYVGM 408 (731)
Q Consensus 331 f~-DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-vpfi~is~se~~~~~vG~ 408 (731)
|+ ++.|++++.+ ++|++++.... -....-+-++|.||+|+|||+|++.+.+-+. .+++.+..+-+.+.-...
T Consensus 59 f~~~~~G~~~~i~---~lV~~fk~AA~---g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L 132 (358)
T PF08298_consen 59 FEDEFYGMEETIE---RLVNYFKSAAQ---GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHL 132 (358)
T ss_pred ccccccCcHHHHH---HHHHHHHHHHh---ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhh
Confidence 45 8999999766 55555554221 1223345688999999999999999987653 366666555444433344
Q ss_pred chHHHHHHHHH
Q 004770 409 GASRVRDLFAR 419 (731)
Q Consensus 409 ~~~~vr~lF~~ 419 (731)
-+..+|+.|..
T Consensus 133 ~P~~~r~~~~~ 143 (358)
T PF08298_consen 133 FPKELRREFED 143 (358)
T ss_pred CCHhHHHHHHH
Confidence 45666666654
No 421
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.65 E-value=0.0054 Score=67.70 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=63.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh------hHHHh--hccc--------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMG-------------- 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se------~~~~~--vG~~-------------- 409 (731)
|.....-..|+||||||||.|+..+|-.. +...++++..+ +.+.. .|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45666668899999999999999887432 24566676543 11100 0111
Q ss_pred -h----HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 004770 410 -A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 410 -~----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (731)
. ..+..+-.......+.+|+||-|-++....-.+ .+.-.++.+.+++++..|..+....++.||.+
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 0 111222222334568899999999886542111 11123445556666666554433455555554
No 422
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.64 E-value=0.0032 Score=61.35 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
|.|+|+||||||||+++|+.. |.+++.-.+.++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 789999999999999999999 98887544444443
No 423
>PTZ00035 Rad51 protein; Provisional
Probab=96.63 E-value=0.0081 Score=66.22 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=63.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechhh------HHHh--hccc--------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEF------VELY--VGMG-------------- 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------vpfi~is~se~------~~~~--vG~~-------------- 409 (731)
|.....-+.|+||||+|||+|+..++.... ...++++..+- .... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 556666788999999999999999885432 34556654431 1100 0000
Q ss_pred --h---HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 004770 410 --A---SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 410 --~---~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (731)
+ ..+..+........+.+|+||-|-++....-.+ .+...++.+.+.+++..|..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 0 111112222234567899999999876542110 11223445556776666654444455666544
No 424
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.63 E-value=0.0059 Score=62.37 Aligned_cols=124 Identities=27% Similarity=0.427 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHH
Q 004770 341 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 420 (731)
Q Consensus 341 K~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A 420 (731)
+..|..+|.....| |.+....++|+|+.|+|||++.+.|+.+ ++.-+.... ........ .
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~~----l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLEQ----L 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHHH----H
Confidence 45555555544444 4556667889999999999999999766 221111100 00111111 1
Q ss_pred HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh-hcCCCC---------CCcEEEEEEcCCCCCC-Ccccc
Q 004770 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDS---------NSAVIVLGATNRSDVL-DPALR 489 (731)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-mdg~~~---------~~~VIVIaATN~pd~L-DpALl 489 (731)
... -|+.|||++.+.+.. ...+-.+++. .+.+.. ....++|+|||..+-| |+.=-
T Consensus 94 ~~~--~iveldEl~~~~k~~------------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGn 159 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKKD------------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGN 159 (198)
T ss_pred HHh--HheeHHHHhhcchhh------------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCC
Confidence 111 289999999875221 1233334432 222211 1346889999998765 44445
Q ss_pred CCCccceEEEee
Q 004770 490 RPGRFDRVVMVE 501 (731)
Q Consensus 490 RpGRFdr~I~v~ 501 (731)
| ||= .|.+.
T Consensus 160 R--Rf~-~v~v~ 168 (198)
T PF05272_consen 160 R--RFW-PVEVS 168 (198)
T ss_pred e--EEE-EEEEc
Confidence 5 663 34443
No 425
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.62 E-value=0.015 Score=67.00 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeechh
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASE 400 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e----lgvpfi~is~se 400 (731)
|...+..+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 5667788999999999999999988543 267877777543
No 426
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0032 Score=62.66 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.++++|.||||||++++.++ ++|.++++++ +|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~ 35 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAK 35 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHH
Confidence 48999999999999999999 9999987764 5543
No 427
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.62 E-value=0.01 Score=59.80 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..+...+.|.||+|+|||+|.+.+++..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456679999999999999999999976
No 428
>PRK14528 adenylate kinase; Provisional
Probab=96.61 E-value=0.0019 Score=64.84 Aligned_cols=35 Identities=29% Similarity=0.600 Sum_probs=29.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
+.+++.||||+|||++|+.+|...+++.+.+ .+++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~--~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST--GDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC--CHHH
Confidence 3589999999999999999999999887654 4444
No 429
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.60 E-value=0.002 Score=63.66 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
-+++.||||+||||+++.++.++|.+. ++.++++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 488999999999999999999998665 4455544
No 430
>PRK13808 adenylate kinase; Provisional
Probab=96.59 E-value=0.009 Score=65.60 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.|+|+||||+|||++++.||..++++++ +..+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHHHH
Confidence 3899999999999999999999987655 4455554
No 431
>PRK14527 adenylate kinase; Provisional
Probab=96.59 E-value=0.0019 Score=64.89 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+.|.-++++||||+|||++|+.+|.+.+.+.++ ..+++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~r 42 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDILR 42 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHHH
Confidence 456779999999999999999999999876654 445543
No 432
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.59 E-value=0.021 Score=57.42 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..++..+.|.||+|+|||+|++++++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456679999999999999999999964
No 433
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.012 Score=59.09 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=23.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..+...+.|.||+|+|||+|++.+++.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345567899999999999999999974
No 434
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.57 E-value=0.011 Score=66.34 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
...-++|+||||+|||+|++.+++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 344599999999999999999999753
No 435
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.56 E-value=0.0058 Score=67.00 Aligned_cols=71 Identities=27% Similarity=0.275 Sum_probs=47.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhc-cc----h---HHHHH---HHHHHHhcCCeEEEEccc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG-MG----A---SRVRD---LFARAKKEAPSIIFIDEI 433 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG-~~----~---~~vr~---lF~~A~~~aP~ILfIDEI 433 (731)
.+.++|.|+||+|||+|++++++..+.+++.-.+.++.....+ .. . ..+.. ....+...++.|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT- 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-
Confidence 3469999999999999999999999999987766666554321 11 0 11111 12233344566999995
Q ss_pred chh
Q 004770 434 DAV 436 (731)
Q Consensus 434 DaL 436 (731)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 444
No 436
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.56 E-value=0.0094 Score=58.42 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVA 386 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA 386 (731)
++..+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999984
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.52 E-value=0.0036 Score=64.40 Aligned_cols=96 Identities=27% Similarity=0.389 Sum_probs=49.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH-hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCccc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~-~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (731)
-++|+||+|||||.+|-++|++.|.|++..+.-..... -+|.+ +....-+ +..+ =+++||-.---
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~el----~~~~-RiyL~~r~l~~-------- 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPSEL----KGTR-RIYLDDRPLSD-------- 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGG----TT-E-EEES----GGG--------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHHHH----cccc-eeeeccccccC--------
Confidence 37899999999999999999999999999887555432 23322 1111111 1112 37777643211
Q ss_pred ccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 446 ~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
+.-..++....|+..++.+....++|+=+-+
T Consensus 69 --G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGS 99 (233)
T PF01745_consen 69 --GIINAEEAHERLISEVNSYSAHGGLILEGGS 99 (233)
T ss_dssp ---S--HHHHHHHHHHHHHTTTTSSEEEEEE--
T ss_pred --CCcCHHHHHHHHHHHHHhccccCceEEeCch
Confidence 1112234556677777777775555554544
No 438
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.52 E-value=0.0045 Score=62.67 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEeechhhHHHh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELY 405 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el-gvpfi~is~se~~~~~ 405 (731)
..|.-+++.|+||+|||+++..+..++ +-.++.++..+|...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 578889999999999999999999988 7788889988875543
No 439
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.008 Score=59.35 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 403 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg---vpfi~is~se~~~ 403 (731)
..|.-++|+|+||+|||++|+++++.+. ...+.++...+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 4567799999999999999999999875 3355566555544
No 440
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.51 E-value=0.0075 Score=66.57 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
-+++.|.||||||.||-.+|.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999987
No 441
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.006 Score=60.53 Aligned_cols=107 Identities=23% Similarity=0.334 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeech---h-------hHH----------Hhh-----------cc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSAS---E-------FVE----------LYV-----------GM 408 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--fi~is~s---e-------~~~----------~~v-----------G~ 408 (731)
......+.|.||+|+|||+|++++++..... -+.+++. . +.. .+. -.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 3455568899999999999999999864210 0111110 0 000 000 01
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 409 GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 409 ~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
+..+-+-.+..|....|.++++||--. +.+......+.+++.++.. ..+..+|.+|..++
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~-----------~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~ 162 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTS-----------ALDPITRREVRALLKSLQA---QLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcc-----------cCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 123344456667778899999999643 2444555566666666542 11234555555544
No 442
>PRK02496 adk adenylate kinase; Provisional
Probab=96.51 E-value=0.0026 Score=63.25 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
.++|.||||+|||++|+.+|..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998876543
No 443
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.51 E-value=0.021 Score=64.80 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=45.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-------Hh--------hc----cc-hHHHHHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY--------VG----MG-ASRVRDLFAR 419 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~-------~~--------vG----~~-~~~vr~lF~~ 419 (731)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+.. .+ .. .. ....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 457789999999999999999998765 65666666543321 00 10 01 1223445566
Q ss_pred HHhcCCeEEEEcccc
Q 004770 420 AKKEAPSIIFIDEID 434 (731)
Q Consensus 420 A~~~aP~ILfIDEID 434 (731)
++...-.+||||=.-
T Consensus 178 ~~~~~~DvViIDTaG 192 (429)
T TIGR01425 178 FKKENFDIIIVDTSG 192 (429)
T ss_pred HHhCCCCEEEEECCC
Confidence 665555689988653
No 444
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.50 E-value=0.017 Score=56.79 Aligned_cols=33 Identities=36% Similarity=0.376 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
-++++||||+|||+++..+|..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 37899999999999999998764 6667677665
No 445
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.49 E-value=0.024 Score=65.76 Aligned_cols=40 Identities=33% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechh
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASE 400 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se 400 (731)
|.+...-+||+|+||+|||+|+..++.+. |-+.++++..+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 45667779999999999999999876532 66777776554
No 446
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.49 E-value=0.0024 Score=65.13 Aligned_cols=34 Identities=35% Similarity=0.652 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
|+|.||||+|||++|+.+|...+++.++ .++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7999999999999999999999887755 445544
No 447
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.47 E-value=0.02 Score=71.58 Aligned_cols=179 Identities=20% Similarity=0.245 Sum_probs=99.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHH-HHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcC---------C-----
Q 004770 361 GARPPRGVLLVGLPGTGKTLL-AKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA---------P----- 425 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~L-AkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~a---------P----- 425 (731)
....-++++++||||+|||+| .-++-.+.-..++.++-+... .++..+ ..+++-...- |
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~l-s~Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKL-SVLERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHH-HHHHhhceeeccCCeEEEccCcchh
Confidence 345567999999999999986 457777777777777654321 111122 2222221111 1
Q ss_pred -eEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC--------CCcEEEEEEcCCCCCCC-----ccccCC
Q 004770 426 -SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--------NSAVIVLGATNRSDVLD-----PALRRP 491 (731)
Q Consensus 426 -~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--------~~~VIVIaATN~pd~LD-----pALlRp 491 (731)
-|+|.|||. |...+.-. ..+ .--.+.+ |.+-.||-. -.++++.+++|.+.... ..++|
T Consensus 1564 ~lVLFcDeIn-Lp~~~~y~---~~~--vI~FlR~-l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r- 1635 (3164)
T COG5245 1564 DLVLFCDEIN-LPYGFEYY---PPT--VIVFLRP-LVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR- 1635 (3164)
T ss_pred heEEEeeccC-CccccccC---CCc--eEEeeHH-HHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc-
Confidence 299999998 54332210 000 0001112 222233322 25789999999875432 33333
Q ss_pred CccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCC--HHHH------------------HHhCCCCCHHHHHHHHHHH
Q 004770 492 GRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDID--LGDI------------------ASMTTGFTGADLANLVNEA 551 (731)
Q Consensus 492 GRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvd--l~~L------------------A~~t~G~SgadL~~Lv~eA 551 (731)
| .-.+.+..|.......|...++.+..+- -++.. .+.+ .....+|+|+||...++..
T Consensus 1636 -~-~v~vf~~ype~~SL~~Iyea~l~~s~l~-~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i 1712 (3164)
T COG5245 1636 -K-PVFVFCCYPELASLRNIYEAVLMGSYLC-FDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAI 1712 (3164)
T ss_pred -C-ceEEEecCcchhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHH
Confidence 1 3357788999999998888777543221 11100 0001 1233689999999998765
Q ss_pred HHHHH
Q 004770 552 ALLAG 556 (731)
Q Consensus 552 a~~A~ 556 (731)
.-.|.
T Consensus 1713 ~~yae 1717 (3164)
T COG5245 1713 FGYAE 1717 (3164)
T ss_pred HhHHh
Confidence 55443
No 448
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.47 E-value=0.022 Score=57.84 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
......+.|.||+|+|||+|++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456679999999999999999999864
No 449
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.46 E-value=0.0092 Score=59.33 Aligned_cols=108 Identities=25% Similarity=0.334 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh--------hHHH--h-------hc------------cch
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVEL--Y-------VG------------MGA 410 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se--------~~~~--~-------vG------------~~~ 410 (731)
..+...+.|.||+|+|||+|++.+++.... --+.+++.+ +... | ++ .+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 445667999999999999999999996521 011222111 0000 0 01 012
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 411 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
.+-+-.+..|....|.++++||--. +.+....+.+.+++.++.. +.+..+|.+|+.++.
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~-----------~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTS-----------HLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcc-----------CCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 2334445566667899999999643 2344455666677766641 112355556665543
No 450
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.46 E-value=0.013 Score=60.90 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 004770 368 VLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~e 388 (731)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998863
No 451
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.46 E-value=0.0073 Score=68.03 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..+.|.|+|++|||||||+++||...|.+++.--+.++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 4567999999999999999999999998876655555543
No 452
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0025 Score=62.91 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
+-+.|||||||||+|+.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999975
No 453
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.45 E-value=0.0073 Score=64.48 Aligned_cols=75 Identities=24% Similarity=0.463 Sum_probs=49.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHH------hcCCcEEEeechhhHH-----HhhccchHHHHHHHHHHH--------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAG------EAEVPFISCSASEFVE-----LYVGMGASRVRDLFARAK-------- 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~------elgvpfi~is~se~~~-----~~vG~~~~~vr~lF~~A~-------- 421 (731)
..+....+||.||.|.||+.||+.|-. .+.-+|+.++|..+.. ...| .++..|.-|+
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllr 279 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLR 279 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhc
Confidence 344445599999999999999999854 3567999999987642 1111 1222222221
Q ss_pred hcCCeEEEEcccchhhcc
Q 004770 422 KEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~ 439 (731)
...-.++|+|||..|+.+
T Consensus 280 sadggmlfldeigelgad 297 (531)
T COG4650 280 SADGGMLFLDEIGELGAD 297 (531)
T ss_pred cCCCceEehHhhhhcCcc
Confidence 122349999999888644
No 454
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.44 E-value=0.0089 Score=65.32 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=63.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechhhH------HHh--hccc--------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEFV------ELY--VGMG-------------- 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------vpfi~is~se~~------~~~--vG~~-------------- 409 (731)
|..+..-+.++||||+|||+|+..+|..+. ...++++..+-. ... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 556667788999999999999999886321 255677655411 100 0110
Q ss_pred -hH----HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 410 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 410 -~~----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
.. .+..+........+++|+||-|-++......+ .+....+...+.+++..|..+....++.||.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~--~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG--RGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC--cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01 11222222234568899999999886432111 011122334456666666554444555565553
No 455
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.43 E-value=0.025 Score=60.98 Aligned_cols=93 Identities=24% Similarity=0.457 Sum_probs=59.7
Q ss_pred CCe-EEEEcCCCCcHHHHHHHHHHhcCC----cEEEee-chhh--------H-HHhhccchHHHHHHHHHHHhcCCeEEE
Q 004770 365 PRG-VLLVGLPGTGKTLLAKAVAGEAEV----PFISCS-ASEF--------V-ELYVGMGASRVRDLFARAKKEAPSIIF 429 (731)
Q Consensus 365 pkg-VLL~GPPGTGKT~LAkAlA~elgv----pfi~is-~se~--------~-~~~vG~~~~~vr~lF~~A~~~aP~ILf 429 (731)
|+| ||++||.|+|||+..-++-...|. +.+.+. .-+| + ..-+|..-......++.|....|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 445 677899999999888888877642 333331 1122 1 134555555566677777788999999
Q ss_pred EcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
+-|+-.+ +++..-|+.-+ .+-+|++|-.
T Consensus 204 vGEmRD~-----------------ETi~~ALtAAE-----TGHLV~~TLH 231 (353)
T COG2805 204 VGEMRDL-----------------ETIRLALTAAE-----TGHLVFGTLH 231 (353)
T ss_pred EeccccH-----------------HHHHHHHHHHh-----cCCEEEEecc
Confidence 9998432 35555565544 4557777754
No 456
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.40 E-value=0.007 Score=69.10 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=60.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhcCCcEE-EeechhhHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEFVEL 404 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkAlA~elgvpfi-~is~se~~~~ 404 (731)
...+|+++.......+.+.+++ ..|.| +|++||.|+|||+...++.++++-+.. .++..|-++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~--------------~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLL--------------NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHH--------------hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 4677888888887777776655 24555 567799999999999999998865443 2333333331
Q ss_pred hh-c-------c-chHHHHHHHHHHHhcCCeEEEEcccch
Q 004770 405 YV-G-------M-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (731)
Q Consensus 405 ~v-G-------~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (731)
.. | . ..-.....++......|+||.+.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 10 1 0 001123344445567899999999953
No 457
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.40 E-value=0.023 Score=54.87 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHH-HHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTL-LAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~-LAkAlA~el 389 (731)
+.+++.||+|+|||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555443
No 458
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.39 E-value=0.011 Score=68.54 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..++...+.|+||+|+|||||++.+++..
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566779999999999999999999864
No 459
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.39 E-value=0.0096 Score=65.74 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=66.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh------hHHHh--hccc--------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMG-------------- 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se------~~~~~--vG~~-------------- 409 (731)
|.....-++++|+||+|||.|+..+|-.+ +.+.++++..+ +.+.. .+..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 45566668899999999999999887432 23577776654 11110 0100
Q ss_pred -hHHHHHHH----HHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 410 -ASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 410 -~~~vr~lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
...+..++ .......+.+|+||-|-++....-.+ .+...++.+.+.+++..|..+....++.||.+.
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 11111122 22344568899999999886532111 112234445677777776655555566666554
No 460
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.39 E-value=0.071 Score=57.07 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=28.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
...|+.++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457789999999999999999888765 5455555543
No 461
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.38 E-value=0.013 Score=68.67 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4566679999999999999999999964
No 462
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.38 E-value=0.017 Score=57.46 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
|.|+|+||+|||++++.+++ +|++++. +.++....
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~~ 36 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHEV 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHhh
Confidence 78999999999999999999 7877654 45555443
No 463
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.37 E-value=0.021 Score=63.66 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
..||+||||||||+|++.+|+.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998865
No 464
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.37 E-value=0.01 Score=71.17 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..+++..+.|+||+|+|||||++.+++..
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567779999999999999999999854
No 465
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.37 E-value=0.02 Score=58.15 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=30.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
-+.|+|++|+|||++++.++..+|.+++ ++.++....
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~ 39 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREA 39 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHH
Confidence 4889999999999999999998898886 455665443
No 466
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.013 Score=61.88 Aligned_cols=57 Identities=25% Similarity=0.312 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 411 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
+.-|-++.+|....|.++++||=- .+.+...+..+.++|.++.. .+..|+..|.+.+
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~-----------~gvD~~~~~~i~~lL~~l~~----eg~tIl~vtHDL~ 200 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPF-----------TGVDVAGQKEIYDLLKELRQ----EGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCc-----------ccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCcH
Confidence 344566778888899999999942 13445556777888888762 2556666776554
No 467
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.33 E-value=0.01 Score=71.15 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999854
No 468
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.33 E-value=0.0089 Score=59.44 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=41.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc-------------CCcEEEeechhhH----HHh---------------hc------
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA-------------EVPFISCSASEFV----ELY---------------VG------ 407 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el-------------gvpfi~is~se~~----~~~---------------vG------ 407 (731)
.-++|+||||+|||+++..+|..+ +.++++++..+-. ..+ ..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 348899999999999999887643 2366666543221 110 00
Q ss_pred -----------cchHHHHHHHHHHHh-cCCeEEEEcccchhhcc
Q 004770 408 -----------MGASRVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 408 -----------~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 439 (731)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001223445555555 56889999999998754
No 469
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.33 E-value=0.0087 Score=71.99 Aligned_cols=28 Identities=46% Similarity=0.616 Sum_probs=24.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999864
No 470
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.32 E-value=0.0028 Score=58.09 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el 389 (731)
|+|.|+|||||||+|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 471
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.28 E-value=0.0029 Score=60.99 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=28.6
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 370 LVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 370 L~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
|.||||+|||++|+.||.+.+.+ .++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHHHH
Confidence 68999999999999999998764 566677766544
No 472
>PRK01184 hypothetical protein; Provisional
Probab=96.27 E-value=0.0042 Score=61.66 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
-|+|+||||+||||+++ ++.+.|++++.. ++++
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~l 35 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVI 35 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHH
Confidence 58899999999999998 889999888655 3444
No 473
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.27 E-value=0.024 Score=56.75 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=29.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
|.|+|.+|+|||++++.++...+.+++ ++.++.....
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~ 38 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVV 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHH
Confidence 789999999999999999998767765 4555654433
No 474
>PRK04182 cytidylate kinase; Provisional
Probab=96.27 E-value=0.004 Score=60.92 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
.|+|.|+||+|||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999999875
No 475
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.25 E-value=0.02 Score=63.68 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=42.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC------CcEEEee-chhhHHH-------h-----hccchHHHHHHHHHHHhcCCe
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAE------VPFISCS-ASEFVEL-------Y-----VGMGASRVRDLFARAKKEAPS 426 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg------vpfi~is-~se~~~~-------~-----vG~~~~~vr~lF~~A~~~aP~ 426 (731)
..++++||+|+||||++++++++.. ..++.+. .-++.-. . ++.........++.+....|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4589999999999999999998752 2233221 1111100 0 111112345556667778999
Q ss_pred EEEEcccc
Q 004770 427 IIFIDEID 434 (731)
Q Consensus 427 ILfIDEID 434 (731)
++++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999974
No 476
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.24 E-value=0.016 Score=68.23 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..++...+.|+||+|+|||||++.+++..
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34566779999999999999999999854
No 477
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.23 E-value=0.013 Score=70.27 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999864
No 478
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.25 Score=55.42 Aligned_cols=120 Identities=10% Similarity=0.121 Sum_probs=62.2
Q ss_pred CeEEEEcccchhhc----ccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc--CCCCCC-----Ccccc----
Q 004770 425 PSIIFIDEIDAVAK----SRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT--NRSDVL-----DPALR---- 489 (731)
Q Consensus 425 P~ILfIDEIDaL~~----~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT--N~pd~L-----DpALl---- 489 (731)
|-++.||.+.++.. .+... .-..+..-+.++.+...+.+ +-+.+.++.++. ..+... ++-..
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~--~~v~P~dl~li~~~~~~i~n-dwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~ll 392 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDN--KPVTPLDLTLIHLLRDIISN-DWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLL 392 (461)
T ss_pred cEEEEEcCcchheeeeeeecccc--CcCCchhhhHHHHHHHHHhc-ccccceEEEEecccccchhccccccccCCchHhc
Confidence 65888999999976 22221 11122333444444454543 223445555554 222111 11111
Q ss_pred CCCccc-----eEEEeeCCCHHHHHHHHHHHHhcCCCC--CcccCCHHHHHHhCCCCCHHHHHHHH
Q 004770 490 RPGRFD-----RVVMVETPDKIGREAILKVHVSKKELP--LAKDIDLGDIASMTTGFTGADLANLV 548 (731)
Q Consensus 490 RpGRFd-----r~I~v~~Pd~~eR~eILk~~l~~~~l~--l~~dvdl~~LA~~t~G~SgadL~~Lv 548 (731)
-+--|| ..|+++.++.+|-.+++.++++..-+. ...+-..+++--.+ +.+|+.++.+|
T Consensus 393 g~egfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 393 GEEGFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred CccchhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 000111 147888999999999999998763221 11122345555555 55787776665
No 479
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.23 E-value=0.012 Score=60.63 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..+...+.|.||+|+|||||++.+++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455668999999999999999999853
No 480
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.15 Score=53.87 Aligned_cols=149 Identities=12% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCCeEEEEcCCC-CcHHHHHHHHHHhcCC---------cEEEeechhhHHH-hhccchHHHHHHHHHHHh----cCCeE
Q 004770 363 RPPRGVLLVGLPG-TGKTLLAKAVAGEAEV---------PFISCSASEFVEL-YVGMGASRVRDLFARAKK----EAPSI 427 (731)
Q Consensus 363 ~~pkgVLL~GPPG-TGKT~LAkAlA~elgv---------pfi~is~se~~~~-~vG~~~~~vr~lF~~A~~----~aP~I 427 (731)
+.....||.|..+ ++|..++.-++..+.+ .++.+....-... --.-+...+|++-+.+.. ....|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 3455799999998 9999988887775522 2333321100000 001134567776665542 33459
Q ss_pred EEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHH
Q 004770 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (731)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~e 507 (731)
++||++|.+.. ..-|.||..++. +..++++|..|..++.|.|.+++ | ...+.+..|+...
T Consensus 93 iII~~ae~mt~---------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--R-Cq~i~~~~p~~~~ 152 (263)
T PRK06581 93 AIIYSAELMNL---------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--R-CFKINVRSSILHA 152 (263)
T ss_pred EEEechHHhCH---------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--c-eEEEeCCCCCHHH
Confidence 99999999852 345899999984 55677888888888999999988 5 3478899998877
Q ss_pred HHHHHHHHHhcCCCCCcccCCHHHHHHh
Q 004770 508 REAILKVHVSKKELPLAKDIDLGDIASM 535 (731)
Q Consensus 508 R~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (731)
-.+.....+. |..++..++-|.+.
T Consensus 153 ~~e~~~~~~~----p~~~~~~l~~i~~~ 176 (263)
T PRK06581 153 YNELYSQFIQ----PIADNKTLDFINRF 176 (263)
T ss_pred HHHHHHHhcc----cccccHHHHHHHHH
Confidence 7777666653 33444445555544
No 481
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.025 Score=57.32 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..++..+.|.||+|+|||||++++++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455668999999999999999999864
No 482
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.21 E-value=0.028 Score=56.97 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..+...+.|.||+|+|||+|++.+++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455669999999999999999999864
No 483
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.21 E-value=0.02 Score=57.97 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..++..+.|.||+|+|||+|.+.+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456667999999999999999999997
No 484
>PF13479 AAA_24: AAA domain
Probab=96.19 E-value=0.0076 Score=61.87 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcE-EEeechhh-HH------HhhccchHHHHHHHHHHH--hcCCeEEEEcccc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEF-VE------LYVGMGASRVRDLFARAK--KEAPSIIFIDEID 434 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpf-i~is~se~-~~------~~vG~~~~~vr~lF~~A~--~~aP~ILfIDEID 434 (731)
+..+|||||||+|||++|..+ +-|+ +.+..+.. +. .+.-.+-..+.+.++.+. ...-.+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 456999999999999999988 3333 22222210 00 011113345555555432 2334599999888
Q ss_pred hh
Q 004770 435 AV 436 (731)
Q Consensus 435 aL 436 (731)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 485
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.17 E-value=0.018 Score=66.72 Aligned_cols=28 Identities=36% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566679999999999999999999854
No 486
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.16 E-value=0.0049 Score=59.89 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
|.|+|++|+|||++|+.+|+.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997653
No 487
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.02 Score=56.39 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
.+..+.|.|+||+|||++|+.++..+ +..+..++...+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 45578999999999999999999887 44566666655443
No 488
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.14 E-value=0.041 Score=63.77 Aligned_cols=107 Identities=24% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh------cc----------------------c
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM----------------------G 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v------G~----------------------~ 409 (731)
|......++++||||+|||+|+..++.+. |-+.++++..+-.+.+. |. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56667779999999999999999987653 66777776543222110 00 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
...+..+.+......|.+|+||-+..+.... ......+.+..|+..+. +.++.+|.+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~~~~~~~l~~l~~~~k----~~~~t~l~t~ 406 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SLNEFRQFVIRLTDYLK----SEEITGLFTN 406 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CHHHHHHHHHHHHHHHH----hCCCeEEEEe
Confidence 1122233334445678899999998885321 12223344455555544 2345555553
No 489
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.13 E-value=0.031 Score=58.13 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~ 387 (731)
....++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999987
No 490
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.13 E-value=0.018 Score=67.73 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=25.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..++...+.|+|++|+|||||++.+++..
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35566779999999999999999999865
No 491
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.13 E-value=0.031 Score=57.31 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~ 387 (731)
.+-++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999974
No 492
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.12 E-value=0.0085 Score=57.52 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvp 392 (731)
++..-++|.|+.|+|||+|+|.+++.++++
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345569999999999999999999999864
No 493
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.12 E-value=0.0071 Score=66.73 Aligned_cols=71 Identities=28% Similarity=0.376 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEee-chhhH-------HHh------hccchHHHHHHHHHHHhcCCeE
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFV-------ELY------VGMGASRVRDLFARAKKEAPSI 427 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is-~se~~-------~~~------vG~~~~~vr~lF~~A~~~aP~I 427 (731)
..+++++.|++|+|||+++++++++..- ..+.+. ..++. ... .|.+.-.+.++++.+....|..
T Consensus 177 ~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~ 256 (340)
T TIGR03819 177 ARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDR 256 (340)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCe
Confidence 3468999999999999999999987531 122221 11111 000 1222345678888999999999
Q ss_pred EEEcccc
Q 004770 428 IFIDEID 434 (731)
Q Consensus 428 LfIDEID 434 (731)
|++.|+-
T Consensus 257 IivGEiR 263 (340)
T TIGR03819 257 IVVGEVR 263 (340)
T ss_pred EEEeCcC
Confidence 9999983
No 494
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.022 Score=63.62 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=38.9
Q ss_pred ChHhHHHHHHHHHHhc-ChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 337 VDEAKEELEEIVEFLR-SPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 337 ~devK~~L~eiV~~Lk-~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
.+++++.+.+.+.... .+.. .....++.++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~---~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDS---FDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCC---ceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3556666666655422 2111 123557789999999999999999998755 4445445543
No 495
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.10 E-value=0.015 Score=61.65 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=68.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechh-h--------HHHhhcc--------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE-F--------VELYVGM-------------- 408 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------vpfi~is~se-~--------~~~~vG~-------------- 408 (731)
|.+...-.=|+||||+|||.|+-.+|-.+. ...++++... | .+.|--.
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 344444455999999999999998876543 3467776432 1 1111000
Q ss_pred chHHHHHHH----HHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 409 GASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 409 ~~~~vr~lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
....+.+++ .........+|+||-|-++.+..-.+ .....++.+.+..++..|..+....++.||.|.......
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~ 191 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKI 191 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSST
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecC
Confidence 001111122 22223456799999999987643211 112345667778877777666555666676554433333
Q ss_pred C
Q 004770 485 D 485 (731)
Q Consensus 485 D 485 (731)
+
T Consensus 192 ~ 192 (256)
T PF08423_consen 192 D 192 (256)
T ss_dssp T
T ss_pred C
Confidence 3
No 496
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.09 E-value=0.027 Score=58.29 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~ 387 (731)
....-+.|+||+|+|||||.|++..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3445599999999999999999975
No 497
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.09 E-value=0.065 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..++|.|++|+|||+|.+++.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 46999999999999999999875
No 498
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.08 E-value=0.017 Score=61.67 Aligned_cols=169 Identities=17% Similarity=0.210 Sum_probs=94.4
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHH
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~ 412 (731)
|++-.+++.+.+..+...|..|. .++||+|.+|+||++++|-.|--++..++.+....-.+ ..+-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 57778888888888887777643 36999999999999999988888899999887543211 1122345
Q ss_pred HHHHHHHHH-hcCCeEEEEcccchh-----------hcccCCcccccchHHHHHHHHHHHHhhcC--C------------
Q 004770 413 VRDLFARAK-KEAPSIIFIDEIDAV-----------AKSRDGRFRIVSNDEREQTLNQLLTEMDG--F------------ 466 (731)
Q Consensus 413 vr~lF~~A~-~~aP~ILfIDEIDaL-----------~~~r~~~~~~~~~~e~~~~Ln~LL~emdg--~------------ 466 (731)
++.++.+|. +..|.+++|+|-+-. .....- ..--..+|.+..+..+-..+.. .
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGei-p~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~ 155 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEI-PNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFI 155 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS--TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCC-CCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHH
Confidence 666666665 456888888874322 111100 0011245555555555443321 1
Q ss_pred ---CCCCcEEEEEEcCCCCCC------CccccCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 004770 467 ---DSNSAVIVLGATNRSDVL------DPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (731)
Q Consensus 467 ---~~~~~VIVIaATN~pd~L------DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (731)
..+-.|+++.... .+.+ -|+|.. ...+..+...+.+....+-+.++..
T Consensus 156 ~rvr~nLHivl~~sp~-~~~~r~~~~~fPaL~~---~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 156 ERVRKNLHIVLCMSPV-GPNFRDRCRSFPALVN---CCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHCCCEEEEEEESTT-TTCCCHHHHHHCCHHH---HSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHhheeEEEEECCC-CchHHHHHHhCcchhc---ccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 1112233333322 2222 255554 2346677788888888888888754
No 499
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.07 E-value=0.051 Score=55.25 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
.-|-.+..|.-+.|.+|+-||=- +..++....-+-.++.++.. .+.-|+.||...+
T Consensus 143 QQRvaIARAiV~~P~vLlADEPT-----------GNLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~ 198 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPT-----------GNLDPDLSWEIMRLFEEINR----LGTTVLMATHDLE 198 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCC-----------CCCChHHHHHHHHHHHHHhh----cCcEEEEEeccHH
Confidence 34555667777889999999831 12345555556677777763 3445666666443
No 500
>PRK08233 hypothetical protein; Provisional
Probab=96.06 E-value=0.0075 Score=59.21 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=26.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC-CcEEEeec
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSA 398 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg-vpfi~is~ 398 (731)
.-|.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999985 44544443
Done!