Query 004770
Match_columns 731
No_of_seqs 690 out of 4123
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 3.5E-71 1.2E-75 623.1 35.2 375 326-708 10-384 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.3E-67 4.5E-72 597.2 29.3 379 321-710 20-399 (499)
3 4b4t_J 26S protease regulatory 100.0 2.5E-52 8.6E-57 458.9 28.7 254 322-578 138-392 (405)
4 4b4t_I 26S protease regulatory 100.0 4.1E-51 1.4E-55 451.0 27.6 254 323-579 173-427 (437)
5 4b4t_H 26S protease regulatory 100.0 9.2E-51 3.2E-55 451.9 27.5 258 323-583 200-458 (467)
6 4b4t_M 26S protease regulatory 100.0 4.4E-50 1.5E-54 446.1 27.1 253 323-578 172-425 (434)
7 4b4t_L 26S protease subunit RP 100.0 1E-49 3.4E-54 443.6 28.9 253 322-577 171-424 (437)
8 4b4t_K 26S protease regulatory 100.0 3.8E-49 1.3E-53 438.1 27.8 252 323-577 163-416 (428)
9 3cf2_A TER ATPase, transitiona 100.0 8.1E-47 2.8E-51 446.3 11.8 313 243-558 343-701 (806)
10 3cf2_A TER ATPase, transitiona 100.0 8.6E-42 2.9E-46 403.5 22.3 247 325-577 197-461 (806)
11 1lv7_A FTSH; alpha/beta domain 100.0 2.2E-38 7.5E-43 326.5 28.2 253 324-579 4-256 (257)
12 2x8a_A Nuclear valosin-contain 100.0 7E-39 2.4E-43 336.6 20.9 250 325-578 3-267 (274)
13 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.9E-39 1.7E-43 329.8 19.1 261 327-587 1-261 (262)
14 3cf0_A Transitional endoplasmi 100.0 9.4E-38 3.2E-42 331.1 25.7 251 324-577 7-283 (301)
15 3h4m_A Proteasome-activating n 100.0 1.8E-36 6.3E-41 315.6 27.6 251 324-577 9-260 (285)
16 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.5E-36 8.5E-41 323.8 24.3 227 324-558 4-233 (322)
17 1ixz_A ATP-dependent metallopr 100.0 2.1E-35 7.3E-40 303.7 28.5 247 323-572 7-253 (254)
18 3eie_A Vacuolar protein sortin 100.0 4.5E-36 1.6E-40 320.8 20.7 229 322-558 8-238 (322)
19 2qp9_X Vacuolar protein sortin 100.0 6E-35 2.1E-39 317.1 23.0 248 324-579 43-335 (355)
20 2r62_A Cell division protease 100.0 2.6E-37 8.9E-42 319.6 3.3 252 325-578 4-256 (268)
21 1iy2_A ATP-dependent metallopr 100.0 7.3E-34 2.5E-38 296.9 29.2 246 324-572 32-277 (278)
22 3hu3_A Transitional endoplasmi 100.0 4.4E-34 1.5E-38 323.1 26.4 245 326-576 198-460 (489)
23 2zan_A Vacuolar protein sortin 100.0 1.1E-33 3.7E-38 316.1 21.6 228 323-558 125-355 (444)
24 3d8b_A Fidgetin-like protein 1 100.0 6.4E-32 2.2E-36 293.2 23.7 245 326-578 78-337 (357)
25 3b9p_A CG5977-PA, isoform A; A 100.0 2.1E-32 7.1E-37 287.0 18.7 245 324-576 13-273 (297)
26 3vfd_A Spastin; ATPase, microt 100.0 3.4E-31 1.2E-35 290.1 22.7 246 324-577 107-367 (389)
27 2di4_A Zinc protease, cell div 100.0 3.9E-33 1.3E-37 286.7 5.4 128 576-708 1-129 (238)
28 1ypw_A Transitional endoplasmi 100.0 3.7E-34 1.3E-38 341.2 -4.2 234 323-559 468-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 4.3E-31 1.5E-35 279.5 9.2 228 360-606 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 6.5E-28 2.2E-32 287.5 24.8 245 325-575 197-459 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 2.4E-25 8.3E-30 249.1 9.5 171 326-504 31-225 (456)
32 3uk6_A RUVB-like 2; hexameric 99.9 7.4E-23 2.5E-27 220.2 20.4 250 327-606 39-359 (368)
33 3syl_A Protein CBBX; photosynt 99.9 2.7E-23 9.2E-28 218.4 14.3 225 331-569 29-280 (309)
34 3pfi_A Holliday junction ATP-d 99.9 4.6E-21 1.6E-25 204.4 22.9 216 326-575 23-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 3.3E-20 1.1E-24 195.8 19.1 219 327-575 7-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 8.4E-21 2.9E-25 198.3 13.7 237 332-574 15-298 (310)
37 3m6a_A ATP-dependent protease 99.8 2.1E-21 7.1E-26 222.2 8.4 226 328-575 77-341 (543)
38 1d2n_A N-ethylmaleimide-sensit 99.8 8.7E-20 3E-24 189.3 15.2 221 331-573 32-262 (272)
39 1g41_A Heat shock protein HSLU 99.8 1.2E-20 4.1E-25 210.3 6.4 169 332-513 15-189 (444)
40 2v1u_A Cell division control p 99.8 9.7E-19 3.3E-23 187.4 19.9 227 328-576 15-277 (387)
41 3hws_A ATP-dependent CLP prote 99.8 3.2E-19 1.1E-23 193.1 15.5 221 333-557 16-324 (363)
42 2z4s_A Chromosomal replication 99.8 5E-19 1.7E-23 197.5 16.6 223 327-576 100-333 (440)
43 2chg_A Replication factor C sm 99.8 4.1E-18 1.4E-22 167.1 20.4 203 326-573 11-224 (226)
44 3pvs_A Replication-associated 99.8 6.6E-19 2.3E-23 197.0 16.5 208 325-575 19-244 (447)
45 1l8q_A Chromosomal replication 99.8 4.4E-18 1.5E-22 180.9 18.0 218 327-574 6-239 (324)
46 2qby_B CDC6 homolog 3, cell di 99.8 9.5E-18 3.2E-22 180.6 20.8 216 329-576 17-271 (384)
47 1g8p_A Magnesium-chelatase 38 99.8 4.1E-18 1.4E-22 181.5 17.2 221 326-578 18-325 (350)
48 3bos_A Putative DNA replicatio 99.8 5.2E-18 1.8E-22 169.7 15.6 207 327-573 23-241 (242)
49 1njg_A DNA polymerase III subu 99.8 1.9E-17 6.6E-22 163.7 19.1 204 326-572 17-248 (250)
50 3u61_B DNA polymerase accessor 99.8 2.6E-18 8.9E-23 182.2 13.5 207 323-574 17-236 (324)
51 2r44_A Uncharacterized protein 99.8 6.7E-18 2.3E-22 179.8 16.5 215 330-578 25-300 (331)
52 1sxj_A Activator 1 95 kDa subu 99.8 3.7E-18 1.3E-22 193.9 15.3 225 324-573 31-272 (516)
53 1in4_A RUVB, holliday junction 99.7 8.6E-17 2.9E-21 172.7 23.7 215 328-576 21-251 (334)
54 2qby_A CDC6 homolog 1, cell di 99.7 7.1E-17 2.4E-21 172.6 20.8 226 327-576 15-273 (386)
55 1sxj_D Activator 1 41 kDa subu 99.7 3.7E-17 1.3E-21 174.1 17.2 211 323-573 28-261 (353)
56 1um8_A ATP-dependent CLP prote 99.7 2E-17 6.8E-22 179.7 15.3 221 333-557 22-341 (376)
57 1r6b_X CLPA protein; AAA+, N-t 99.7 2.2E-17 7.6E-22 195.2 15.7 223 328-576 182-434 (758)
58 1jbk_A CLPB protein; beta barr 99.7 1.8E-17 6.2E-22 158.7 10.3 159 328-512 18-194 (195)
59 3pxg_A Negative regulator of g 99.7 4.2E-17 1.4E-21 183.2 14.3 206 327-574 175-405 (468)
60 2chq_A Replication factor C sm 99.7 1E-16 3.4E-21 167.8 15.2 204 324-572 9-223 (319)
61 4fcw_A Chaperone protein CLPB; 99.7 5.3E-17 1.8E-21 170.3 12.2 204 332-556 17-279 (311)
62 1fnn_A CDC6P, cell division co 99.7 6.5E-16 2.2E-20 166.1 20.5 223 328-577 13-276 (389)
63 1sxj_B Activator 1 37 kDa subu 99.7 6.1E-16 2.1E-20 162.1 18.8 205 324-573 13-229 (323)
64 1jr3_A DNA polymerase III subu 99.7 7.4E-16 2.5E-20 165.2 19.7 204 326-572 10-241 (373)
65 3te6_A Regulatory protein SIR3 99.7 1.4E-16 4.9E-21 170.7 12.3 159 334-518 22-213 (318)
66 1qvr_A CLPB protein; coiled co 99.7 3.5E-16 1.2E-20 187.7 16.3 205 327-558 165-395 (854)
67 3pxi_A Negative regulator of g 99.7 3.4E-16 1.2E-20 185.3 15.5 199 331-555 490-724 (758)
68 1iqp_A RFCS; clamp loader, ext 99.7 9.1E-16 3.1E-20 161.1 16.9 204 324-572 17-231 (327)
69 3pxi_A Negative regulator of g 99.7 8.8E-16 3E-20 181.8 17.6 190 327-558 175-388 (758)
70 1r6b_X CLPA protein; AAA+, N-t 99.6 6E-16 2E-20 183.0 14.7 196 332-554 458-714 (758)
71 2p65_A Hypothetical protein PF 99.6 1.5E-16 5E-21 152.6 7.2 152 328-504 18-187 (187)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 6.1E-16 2.1E-20 175.2 9.9 209 332-574 22-284 (500)
73 2bjv_A PSP operon transcriptio 99.6 3.2E-15 1.1E-19 154.1 12.5 206 329-568 3-250 (265)
74 3f9v_A Minichromosome maintena 99.6 1.7E-16 5.8E-21 183.4 2.9 221 332-576 295-588 (595)
75 1sxj_C Activator 1 40 kDa subu 99.6 1.1E-14 3.8E-19 155.9 16.6 210 323-572 16-236 (340)
76 1sxj_E Activator 1 40 kDa subu 99.6 1.9E-14 6.5E-19 153.8 17.2 193 326-555 8-244 (354)
77 1ojl_A Transcriptional regulat 99.5 6.1E-15 2.1E-19 156.7 8.2 202 332-568 2-245 (304)
78 1w5s_A Origin recognition comp 99.5 1.6E-13 5.4E-18 148.8 18.8 229 329-576 19-294 (412)
79 1qvr_A CLPB protein; coiled co 99.5 1.5E-14 5.1E-19 173.6 11.6 203 331-556 557-820 (854)
80 3k1j_A LON protease, ATP-depen 99.4 4.5E-13 1.5E-17 155.0 11.5 217 326-574 35-374 (604)
81 3cmw_A Protein RECA, recombina 99.4 1.3E-13 4.6E-18 173.3 5.9 157 324-481 1012-1218(1706)
82 1a5t_A Delta prime, HOLB; zinc 99.4 7.5E-12 2.6E-16 134.2 17.0 161 362-552 21-209 (334)
83 3n70_A Transport activator; si 99.4 6.3E-13 2.2E-17 125.5 7.5 113 332-481 1-116 (145)
84 3co5_A Putative two-component 99.4 2.1E-13 7E-18 128.7 4.1 112 333-481 5-116 (143)
85 2gno_A DNA polymerase III, gam 99.3 3.5E-11 1.2E-15 128.1 14.3 142 336-516 1-152 (305)
86 3kw6_A 26S protease regulatory 99.2 2.4E-11 8.2E-16 103.6 9.6 75 501-577 1-75 (78)
87 2krk_A 26S protease regulatory 99.2 2.6E-11 8.8E-16 105.9 8.9 77 500-578 8-84 (86)
88 3vlf_B 26S protease regulatory 99.2 3.4E-11 1.2E-15 105.4 8.8 79 504-584 2-80 (88)
89 4akg_A Glutathione S-transfera 99.2 1E-10 3.5E-15 153.1 16.8 173 364-553 1266-1487(2695)
90 3ec2_A DNA replication protein 99.2 7.9E-11 2.7E-15 114.3 10.0 133 327-481 5-143 (180)
91 1ny5_A Transcriptional regulat 99.1 2.2E-10 7.6E-15 125.5 9.2 210 331-572 136-384 (387)
92 2w58_A DNAI, primosome compone 99.0 3.3E-10 1.1E-14 111.5 8.9 104 327-437 20-128 (202)
93 3aji_B S6C, proteasome (prosom 99.0 9E-10 3.1E-14 94.8 8.2 75 504-580 2-76 (83)
94 2fna_A Conserved hypothetical 99.0 3E-08 1E-12 104.4 21.1 187 328-550 9-252 (357)
95 3f8t_A Predicted ATPase involv 99.0 3.8E-09 1.3E-13 118.1 13.8 212 334-576 215-484 (506)
96 2qen_A Walker-type ATPase; unk 98.9 1.1E-07 3.8E-12 99.9 23.6 192 328-550 8-248 (350)
97 2dzn_B 26S protease regulatory 98.9 7.9E-10 2.7E-14 95.3 3.6 72 506-579 1-72 (82)
98 3dzd_A Transcriptional regulat 98.8 4.7E-09 1.6E-13 114.4 6.8 195 332-555 129-361 (368)
99 2qgz_A Helicase loader, putati 98.8 6E-09 2E-13 110.9 6.8 102 328-437 120-227 (308)
100 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.4E-09 4.9E-14 116.5 1.9 121 362-488 120-242 (331)
101 2kjq_A DNAA-related protein; s 98.8 3.3E-09 1.1E-13 101.1 3.7 59 364-437 35-96 (149)
102 2r2a_A Uncharacterized protein 98.7 2.3E-08 7.9E-13 100.1 7.0 130 364-507 4-157 (199)
103 4akg_A Glutathione S-transfera 98.5 2.2E-06 7.5E-11 112.8 21.1 169 365-554 645-839 (2695)
104 1svm_A Large T antigen; AAA+ f 98.5 6.3E-08 2.2E-12 106.0 5.0 120 360-502 164-284 (377)
105 3cmu_A Protein RECA, recombina 98.4 3.2E-07 1.1E-11 117.4 9.8 118 361-478 1423-1561(2050)
106 1jr3_D DNA polymerase III, del 98.3 2.8E-06 9.6E-11 90.6 12.6 179 363-575 16-209 (343)
107 3vkg_A Dynein heavy chain, cyt 98.2 3.2E-06 1.1E-10 112.2 13.0 138 365-517 1304-1470(3245)
108 1tue_A Replication protein E1; 98.1 1.1E-06 3.6E-11 88.7 4.0 30 365-394 58-87 (212)
109 1ye8_A Protein THEP1, hypothet 98.0 1.3E-05 4.5E-10 78.4 9.0 28 367-394 2-29 (178)
110 1u0j_A DNA replication protein 97.9 1.9E-05 6.4E-10 82.5 7.2 27 365-391 104-130 (267)
111 2cvh_A DNA repair and recombin 97.8 2.4E-05 8.2E-10 77.0 7.6 40 361-400 16-55 (220)
112 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.0001 3.5E-09 72.6 11.6 38 361-398 19-59 (235)
113 3vkg_A Dynein heavy chain, cyt 97.8 8.3E-05 2.8E-09 99.0 13.6 134 365-512 604-749 (3245)
114 2ehv_A Hypothetical protein PH 97.8 0.00013 4.5E-09 73.0 11.8 130 361-502 26-207 (251)
115 1n0w_A DNA repair protein RAD5 97.7 6E-05 2E-09 75.3 8.5 78 361-438 20-133 (243)
116 1qhx_A CPT, protein (chloramph 97.7 8E-05 2.7E-09 71.1 8.7 40 365-404 3-42 (178)
117 2z43_A DNA repair and recombin 97.7 7.2E-05 2.5E-09 79.6 8.1 115 361-477 103-254 (324)
118 1xp8_A RECA protein, recombina 97.6 0.0001 3.5E-09 80.3 9.0 78 361-438 70-166 (366)
119 2zr9_A Protein RECA, recombina 97.6 6.8E-05 2.3E-09 81.1 6.6 78 361-438 57-153 (349)
120 3hr8_A Protein RECA; alpha and 97.6 8.7E-05 3E-09 80.6 7.3 78 361-438 57-153 (356)
121 1z6t_A APAF-1, apoptotic prote 97.5 0.0024 8.3E-08 72.6 19.3 175 329-548 121-328 (591)
122 4a74_A DNA repair and recombin 97.5 0.00018 6.3E-09 71.0 8.1 29 361-389 21-49 (231)
123 1v5w_A DMC1, meiotic recombina 97.5 0.00016 5.4E-09 77.8 8.0 79 361-439 118-234 (343)
124 3cmu_A Protein RECA, recombina 97.5 9E-05 3.1E-09 95.2 6.7 118 361-478 728-866 (2050)
125 3sfz_A APAF-1, apoptotic pepti 97.5 0.0037 1.3E-07 76.4 20.4 176 329-547 121-327 (1249)
126 2dr3_A UPF0273 protein PH0284; 97.4 0.00063 2.1E-08 67.8 10.4 39 361-399 19-60 (247)
127 1u94_A RECA protein, recombina 97.4 0.00019 6.4E-09 77.9 6.9 78 361-438 59-155 (356)
128 1g41_A Heat shock protein HSLU 97.4 0.001 3.5E-08 74.2 12.8 96 411-513 239-346 (444)
129 1gvn_B Zeta; postsegregational 97.4 0.00049 1.7E-08 72.2 9.7 60 338-401 10-69 (287)
130 3upu_A ATP-dependent DNA helic 97.4 0.00056 1.9E-08 76.2 10.5 54 324-389 16-69 (459)
131 3trf_A Shikimate kinase, SK; a 97.3 0.00011 3.9E-09 70.6 4.0 40 364-405 4-43 (185)
132 2p5t_B PEZT; postsegregational 97.3 0.00044 1.5E-08 70.7 8.4 60 338-401 9-68 (253)
133 2a5y_B CED-4; apoptosis; HET: 97.3 0.002 6.7E-08 73.3 14.7 170 335-545 131-334 (549)
134 3lda_A DNA repair protein RAD5 97.3 0.00031 1.1E-08 77.4 7.5 117 361-479 174-326 (400)
135 3io5_A Recombination and repai 97.3 0.00024 8.2E-09 76.1 6.1 72 367-438 30-125 (333)
136 3dm5_A SRP54, signal recogniti 97.3 0.0011 3.6E-08 74.0 11.6 174 364-553 99-308 (443)
137 2i1q_A DNA repair and recombin 97.2 0.00038 1.3E-08 73.7 7.2 28 361-388 94-121 (322)
138 3vaa_A Shikimate kinase, SK; s 97.2 0.00017 5.7E-09 70.8 4.1 40 363-404 23-62 (199)
139 2zts_A Putative uncharacterize 97.2 0.0012 4E-08 65.9 10.4 39 361-399 26-68 (251)
140 2orw_A Thymidine kinase; TMTK, 97.2 0.00014 4.9E-09 71.3 3.4 31 366-396 4-37 (184)
141 2rhm_A Putative kinase; P-loop 97.2 0.00023 7.8E-09 68.5 4.8 34 362-395 2-35 (193)
142 1pzn_A RAD51, DNA repair and r 97.2 0.00053 1.8E-08 74.0 8.1 40 361-400 127-175 (349)
143 3cmw_A Protein RECA, recombina 97.2 0.00022 7.6E-09 90.6 5.4 78 361-438 728-824 (1706)
144 1kag_A SKI, shikimate kinase I 97.1 0.00067 2.3E-08 64.3 7.1 31 365-395 4-34 (173)
145 1zp6_A Hypothetical protein AT 97.1 0.00036 1.2E-08 67.3 5.1 40 362-401 6-45 (191)
146 2r8r_A Sensor protein; KDPD, P 97.1 0.0058 2E-07 62.3 14.1 163 366-557 7-210 (228)
147 2iyv_A Shikimate kinase, SK; t 97.1 0.00025 8.7E-09 68.1 3.7 36 366-403 3-38 (184)
148 1nlf_A Regulatory protein REPA 97.0 0.00068 2.3E-08 70.1 6.6 27 362-388 27-53 (279)
149 3kb2_A SPBC2 prophage-derived 97.0 0.00038 1.3E-08 65.5 4.1 31 367-397 3-33 (173)
150 3iij_A Coilin-interacting nucl 97.0 0.00036 1.2E-08 66.9 4.0 33 364-396 10-42 (180)
151 1y63_A LMAJ004144AAA protein; 97.0 0.00037 1.3E-08 67.5 3.9 33 364-396 9-42 (184)
152 1via_A Shikimate kinase; struc 97.0 0.00041 1.4E-08 66.3 4.1 29 367-395 6-34 (175)
153 3jvv_A Twitching mobility prot 97.0 0.00051 1.8E-08 74.5 5.2 68 367-434 125-206 (356)
154 2cdn_A Adenylate kinase; phosp 97.0 0.00047 1.6E-08 67.4 4.5 35 362-396 17-51 (201)
155 2iut_A DNA translocase FTSK; n 97.0 0.0047 1.6E-07 70.8 13.1 74 426-513 345-420 (574)
156 2b8t_A Thymidine kinase; deoxy 97.0 0.00048 1.6E-08 70.0 4.4 70 366-436 13-101 (223)
157 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0012 4E-08 67.9 7.3 39 365-403 4-45 (260)
158 1zuh_A Shikimate kinase; alpha 96.9 0.00047 1.6E-08 65.3 3.8 31 366-396 8-38 (168)
159 1qf9_A UMP/CMP kinase, protein 96.9 0.0006 2.1E-08 65.2 4.6 34 363-396 4-37 (194)
160 2r6a_A DNAB helicase, replicat 96.9 0.0013 4.5E-08 73.2 7.7 38 361-398 199-240 (454)
161 1ly1_A Polynucleotide kinase; 96.9 0.00047 1.6E-08 65.3 3.6 30 365-394 2-32 (181)
162 3e1s_A Exodeoxyribonuclease V, 96.9 0.00097 3.3E-08 76.7 6.8 97 366-480 205-317 (574)
163 1tev_A UMP-CMP kinase; ploop, 96.9 0.00057 2E-08 65.5 4.1 37 365-403 3-39 (196)
164 2c95_A Adenylate kinase 1; tra 96.9 0.00054 1.8E-08 66.1 3.9 38 364-403 8-45 (196)
165 2ius_A DNA translocase FTSK; n 96.9 0.0046 1.6E-07 70.2 12.0 77 424-514 296-375 (512)
166 3t61_A Gluconokinase; PSI-biol 96.9 0.00066 2.3E-08 66.4 4.4 33 364-396 17-49 (202)
167 1cr0_A DNA primase/helicase; R 96.8 0.0014 4.8E-08 68.1 6.9 38 360-397 30-71 (296)
168 3lw7_A Adenylate kinase relate 96.8 0.00055 1.9E-08 64.0 3.3 29 367-396 3-31 (179)
169 1aky_A Adenylate kinase; ATP:A 96.8 0.0008 2.7E-08 66.8 4.7 38 364-403 3-40 (220)
170 1e6c_A Shikimate kinase; phosp 96.8 0.00082 2.8E-08 63.6 4.4 30 366-395 3-32 (173)
171 1zd8_A GTP:AMP phosphotransfer 96.8 0.00065 2.2E-08 67.9 3.8 39 363-403 5-43 (227)
172 2q6t_A DNAB replication FORK h 96.8 0.002 6.8E-08 71.5 8.1 39 361-399 196-238 (444)
173 4gp7_A Metallophosphoesterase; 96.8 0.00067 2.3E-08 65.2 3.7 23 363-385 7-29 (171)
174 2ze6_A Isopentenyl transferase 96.8 0.00073 2.5E-08 69.3 4.2 32 367-398 3-34 (253)
175 2fz4_A DNA repair protein RAD2 96.8 0.0054 1.9E-07 62.1 10.5 33 367-399 110-142 (237)
176 2bwj_A Adenylate kinase 5; pho 96.8 0.00068 2.3E-08 65.5 3.6 37 365-403 12-48 (199)
177 2vli_A Antibiotic resistance p 96.8 0.00067 2.3E-08 64.7 3.5 30 365-394 5-34 (183)
178 2pez_A Bifunctional 3'-phospho 96.7 0.0011 3.9E-08 63.4 4.9 38 363-400 3-43 (179)
179 3cm0_A Adenylate kinase; ATP-b 96.7 0.00074 2.5E-08 64.7 3.5 31 365-395 4-34 (186)
180 1ukz_A Uridylate kinase; trans 96.7 0.00086 3E-08 65.4 3.9 38 364-403 14-51 (203)
181 1vma_A Cell division protein F 96.7 0.0035 1.2E-07 66.5 8.8 73 362-434 101-196 (306)
182 1kht_A Adenylate kinase; phosp 96.7 0.00088 3E-08 64.1 3.8 31 365-395 3-38 (192)
183 3dl0_A Adenylate kinase; phosp 96.7 0.00085 2.9E-08 66.2 3.7 30 367-396 2-31 (216)
184 3umf_A Adenylate kinase; rossm 96.7 0.00092 3.2E-08 67.6 4.0 41 362-404 26-66 (217)
185 3tlx_A Adenylate kinase 2; str 96.7 0.00086 3E-08 68.3 3.7 39 363-403 27-65 (243)
186 1ak2_A Adenylate kinase isoenz 96.7 0.0012 4.2E-08 66.3 4.8 38 364-403 15-52 (233)
187 1zak_A Adenylate kinase; ATP:A 96.7 0.00064 2.2E-08 67.6 2.5 38 364-403 4-41 (222)
188 4eun_A Thermoresistant glucoki 96.7 0.0013 4.4E-08 64.5 4.7 33 363-395 27-59 (200)
189 2eyu_A Twitching motility prot 96.6 0.00081 2.8E-08 69.7 3.3 71 363-434 23-108 (261)
190 3be4_A Adenylate kinase; malar 96.6 0.001 3.6E-08 66.1 4.0 37 365-403 5-41 (217)
191 3fb4_A Adenylate kinase; psych 96.6 0.00093 3.2E-08 65.8 3.6 30 367-396 2-31 (216)
192 1knq_A Gluconate kinase; ALFA/ 96.6 0.0013 4.5E-08 62.6 4.3 31 365-395 8-38 (175)
193 2pt5_A Shikimate kinase, SK; a 96.6 0.0014 4.9E-08 61.6 4.3 29 367-395 2-30 (168)
194 2cbz_A Multidrug resistance-as 96.5 0.0078 2.7E-07 61.2 9.5 28 362-389 28-55 (237)
195 1jjv_A Dephospho-COA kinase; P 96.5 0.0031 1.1E-07 61.7 6.2 34 366-402 3-36 (206)
196 1nks_A Adenylate kinase; therm 96.5 0.0017 5.8E-08 62.0 4.0 35 367-401 3-40 (194)
197 2v54_A DTMP kinase, thymidylat 96.4 0.0024 8.2E-08 62.0 5.0 34 364-397 3-37 (204)
198 1cke_A CK, MSSA, protein (cyti 96.4 0.0022 7.5E-08 63.4 4.7 31 365-395 5-35 (227)
199 3crm_A TRNA delta(2)-isopenten 96.4 0.0018 6.3E-08 69.3 4.3 36 364-399 4-39 (323)
200 3bh0_A DNAB-like replicative h 96.4 0.018 6.2E-07 60.9 11.9 38 361-398 64-104 (315)
201 2ewv_A Twitching motility prot 96.4 0.0023 7.7E-08 69.7 5.0 73 362-434 133-219 (372)
202 3uie_A Adenylyl-sulfate kinase 96.4 0.0028 9.5E-08 62.1 5.0 37 363-399 23-62 (200)
203 3sr0_A Adenylate kinase; phosp 96.4 0.002 6.9E-08 64.4 4.1 35 367-403 2-36 (206)
204 2px0_A Flagellar biosynthesis 96.4 0.015 5.2E-07 61.2 11.0 92 338-432 79-190 (296)
205 4a1f_A DNAB helicase, replicat 96.4 0.015 5E-07 62.7 11.0 38 361-398 42-82 (338)
206 2pbr_A DTMP kinase, thymidylat 96.4 0.0026 9E-08 60.9 4.7 31 367-397 2-35 (195)
207 1e4v_A Adenylate kinase; trans 96.3 0.0024 8.1E-08 63.2 4.2 30 367-396 2-31 (214)
208 3ake_A Cytidylate kinase; CMP 96.3 0.0031 1E-07 61.3 4.9 30 367-396 4-33 (208)
209 2if2_A Dephospho-COA kinase; a 96.3 0.0021 7.3E-08 62.6 3.7 34 367-403 3-36 (204)
210 2bbw_A Adenylate kinase 4, AK4 96.2 0.0029 9.8E-08 64.0 4.5 32 364-395 26-57 (246)
211 1tf7_A KAIC; homohexamer, hexa 96.2 0.026 9E-07 63.8 12.8 109 361-480 277-416 (525)
212 2jaq_A Deoxyguanosine kinase; 96.2 0.0025 8.5E-08 61.6 3.8 29 367-395 2-30 (205)
213 2ga8_A Hypothetical 39.9 kDa p 96.2 0.00087 3E-08 72.7 0.6 30 366-395 25-54 (359)
214 1tf7_A KAIC; homohexamer, hexa 96.2 0.023 8E-07 64.2 12.3 113 362-484 36-188 (525)
215 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0014 4.9E-08 70.1 2.1 71 365-435 171-251 (330)
216 3kl4_A SRP54, signal recogniti 96.2 0.0073 2.5E-07 67.1 7.9 72 364-435 96-190 (433)
217 1g5t_A COB(I)alamin adenosyltr 96.2 0.021 7.1E-07 56.9 10.3 116 367-501 30-178 (196)
218 2grj_A Dephospho-COA kinase; T 96.2 0.0049 1.7E-07 60.8 5.8 37 367-405 14-50 (192)
219 1uf9_A TT1252 protein; P-loop, 96.2 0.0037 1.3E-07 60.4 4.7 37 364-403 7-43 (203)
220 2xb4_A Adenylate kinase; ATP-b 96.1 0.0031 1.1E-07 63.1 4.0 35 367-403 2-36 (223)
221 2z0h_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 59.8 4.6 30 368-397 3-35 (197)
222 1uj2_A Uridine-cytidine kinase 96.1 0.0046 1.6E-07 62.9 5.2 40 363-402 20-67 (252)
223 3c8u_A Fructokinase; YP_612366 96.1 0.0042 1.4E-07 61.2 4.7 28 363-390 20-47 (208)
224 2ff7_A Alpha-hemolysin translo 96.1 0.028 9.6E-07 57.5 11.0 27 363-389 33-59 (247)
225 2wwf_A Thymidilate kinase, put 96.0 0.0019 6.3E-08 63.2 1.8 29 364-392 9-37 (212)
226 2plr_A DTMP kinase, probable t 96.0 0.0051 1.8E-07 59.7 4.8 31 365-395 4-36 (213)
227 3r20_A Cytidylate kinase; stru 96.0 0.0044 1.5E-07 63.3 4.5 32 364-395 8-39 (233)
228 2qor_A Guanylate kinase; phosp 96.0 0.0066 2.2E-07 59.6 5.5 29 362-390 9-37 (204)
229 3tau_A Guanylate kinase, GMP k 96.0 0.0062 2.1E-07 60.2 5.3 27 364-390 7-33 (208)
230 3a8t_A Adenylate isopentenyltr 95.9 0.0037 1.3E-07 67.3 3.7 36 364-399 39-74 (339)
231 1nn5_A Similar to deoxythymidy 95.9 0.0022 7.6E-08 62.6 1.8 27 364-390 8-34 (215)
232 3nwj_A ATSK2; P loop, shikimat 95.9 0.0048 1.6E-07 63.6 4.4 32 365-396 48-79 (250)
233 1w36_D RECD, exodeoxyribonucle 95.9 0.025 8.5E-07 65.4 10.4 23 366-388 165-187 (608)
234 2qt1_A Nicotinamide riboside k 95.8 0.0042 1.4E-07 60.8 3.4 33 364-396 20-53 (207)
235 3gfo_A Cobalt import ATP-bindi 95.8 0.024 8.2E-07 59.1 9.3 27 363-389 32-58 (275)
236 3bgw_A DNAB-like replicative h 95.8 0.045 1.5E-06 60.8 12.0 39 361-399 193-234 (444)
237 1q57_A DNA primase/helicase; d 95.8 0.045 1.5E-06 61.4 11.9 39 361-399 238-280 (503)
238 4g1u_C Hemin import ATP-bindin 95.8 0.025 8.7E-07 58.5 9.1 28 362-389 34-61 (266)
239 1vht_A Dephospho-COA kinase; s 95.8 0.0067 2.3E-07 59.9 4.6 31 365-396 4-34 (218)
240 1ex7_A Guanylate kinase; subst 95.8 0.0076 2.6E-07 59.4 4.8 24 366-389 2-25 (186)
241 1q3t_A Cytidylate kinase; nucl 95.8 0.0072 2.5E-07 60.7 4.8 34 362-395 13-46 (236)
242 3ney_A 55 kDa erythrocyte memb 95.7 0.0099 3.4E-07 59.2 5.6 28 363-390 17-44 (197)
243 2yvu_A Probable adenylyl-sulfa 95.7 0.0092 3.1E-07 57.4 5.2 37 363-399 11-50 (186)
244 2h92_A Cytidylate kinase; ross 95.7 0.0069 2.4E-07 59.6 4.5 32 365-396 3-34 (219)
245 3foz_A TRNA delta(2)-isopenten 95.7 0.006 2.1E-07 65.0 4.2 38 363-400 8-45 (316)
246 4e22_A Cytidylate kinase; P-lo 95.7 0.0077 2.6E-07 61.5 4.9 31 365-395 27-57 (252)
247 1ltq_A Polynucleotide kinase; 95.7 0.0053 1.8E-07 63.6 3.7 30 365-394 2-32 (301)
248 3nh6_A ATP-binding cassette SU 95.7 0.032 1.1E-06 59.2 9.8 28 362-389 77-104 (306)
249 3b6e_A Interferon-induced heli 95.7 0.03 1E-06 54.2 9.0 23 366-388 49-71 (216)
250 3zvl_A Bifunctional polynucleo 95.7 0.0096 3.3E-07 65.6 5.9 33 363-395 256-288 (416)
251 2axn_A 6-phosphofructo-2-kinas 95.7 0.023 7.8E-07 64.5 9.0 42 364-405 34-78 (520)
252 1m7g_A Adenylylsulfate kinase; 95.7 0.0069 2.4E-07 59.7 4.2 39 363-401 23-65 (211)
253 1kgd_A CASK, peripheral plasma 95.6 0.0077 2.6E-07 58.0 4.2 27 364-390 4-30 (180)
254 3llm_A ATP-dependent RNA helic 95.6 0.047 1.6E-06 54.7 10.1 22 365-386 76-97 (235)
255 4f4c_A Multidrug resistance pr 95.6 0.013 4.3E-07 73.7 7.1 30 361-390 440-469 (1321)
256 2j41_A Guanylate kinase; GMP, 95.6 0.0075 2.6E-07 58.5 4.0 27 363-389 4-30 (207)
257 4a82_A Cystic fibrosis transme 95.6 0.041 1.4E-06 63.0 10.8 28 362-389 364-391 (578)
258 1rz3_A Hypothetical protein rb 95.6 0.02 6.9E-07 56.1 7.0 38 363-400 20-60 (201)
259 2gxq_A Heat resistant RNA depe 95.5 0.04 1.4E-06 53.2 9.0 17 366-382 39-55 (207)
260 3qf4_B Uncharacterized ABC tra 95.5 0.038 1.3E-06 63.7 10.1 29 361-389 377-405 (598)
261 2f6r_A COA synthase, bifunctio 95.5 0.0065 2.2E-07 63.2 3.4 36 365-403 75-110 (281)
262 3thx_B DNA mismatch repair pro 95.5 0.036 1.2E-06 67.0 10.3 109 362-484 670-799 (918)
263 3rlf_A Maltose/maltodextrin im 95.4 0.039 1.3E-06 60.3 9.5 27 363-389 27-53 (381)
264 1vt4_I APAF-1 related killer D 95.4 0.021 7.2E-07 69.7 7.8 43 335-388 131-173 (1221)
265 1w4r_A Thymidine kinase; type 95.3 0.017 5.9E-07 57.5 5.7 71 364-436 19-103 (195)
266 1p9r_A General secretion pathw 95.3 0.033 1.1E-06 61.6 8.5 93 328-433 143-245 (418)
267 3gd7_A Fusion complex of cysti 95.3 0.046 1.6E-06 59.9 9.5 27 362-388 44-70 (390)
268 3tui_C Methionine import ATP-b 95.3 0.022 7.6E-07 61.9 6.9 28 362-389 51-78 (366)
269 3d3q_A TRNA delta(2)-isopenten 95.3 0.0097 3.3E-07 64.1 3.9 34 365-398 7-40 (340)
270 3exa_A TRNA delta(2)-isopenten 95.2 0.011 3.8E-07 63.1 4.1 34 366-399 4-37 (322)
271 2xau_A PRE-mRNA-splicing facto 95.2 0.029 9.8E-07 66.7 8.2 60 326-388 69-132 (773)
272 1v43_A Sugar-binding transport 95.2 0.043 1.5E-06 59.8 8.9 28 362-389 34-61 (372)
273 3asz_A Uridine kinase; cytidin 95.2 0.0098 3.3E-07 58.2 3.4 32 364-395 5-38 (211)
274 2bdt_A BH3686; alpha-beta prot 95.2 0.013 4.4E-07 56.4 4.2 34 367-401 4-37 (189)
275 3tr0_A Guanylate kinase, GMP k 95.1 0.013 4.4E-07 56.8 4.0 26 364-389 6-31 (205)
276 1odf_A YGR205W, hypothetical 3 95.1 0.013 4.3E-07 61.7 4.1 29 362-390 28-56 (290)
277 3b5x_A Lipid A export ATP-bind 95.1 0.038 1.3E-06 63.3 8.3 28 362-389 366-393 (582)
278 3b60_A Lipid A export ATP-bind 95.0 0.13 4.3E-06 59.0 12.6 28 362-389 366-393 (582)
279 3iuy_A Probable ATP-dependent 95.0 0.057 1.9E-06 53.3 8.5 56 326-383 16-75 (228)
280 2qmh_A HPR kinase/phosphorylas 95.0 0.012 4E-07 59.0 3.3 32 365-397 34-65 (205)
281 3fdi_A Uncharacterized protein 95.0 0.015 5.3E-07 57.5 4.1 30 366-395 7-36 (201)
282 2oap_1 GSPE-2, type II secreti 95.0 0.0075 2.6E-07 68.4 2.1 71 364-434 259-343 (511)
283 3qf4_A ABC transporter, ATP-bi 95.0 0.027 9.3E-07 64.7 6.7 28 362-389 366-393 (587)
284 3a00_A Guanylate kinase, GMP k 94.9 0.014 4.7E-07 56.5 3.6 26 365-390 1-26 (186)
285 1t6n_A Probable ATP-dependent 94.9 0.12 4.3E-06 50.4 10.4 58 328-387 13-73 (220)
286 1hv8_A Putative ATP-dependent 94.9 0.077 2.6E-06 55.3 9.3 58 329-388 6-67 (367)
287 1zu4_A FTSY; GTPase, signal re 94.7 0.052 1.8E-06 57.8 7.7 37 362-398 102-141 (320)
288 3thx_A DNA mismatch repair pro 94.7 0.072 2.5E-06 64.6 9.7 24 364-387 661-684 (934)
289 1qde_A EIF4A, translation init 94.7 0.058 2E-06 52.9 7.5 58 328-387 13-74 (224)
290 1lvg_A Guanylate kinase, GMP k 94.7 0.016 5.5E-07 56.8 3.3 26 364-389 3-28 (198)
291 3b9q_A Chloroplast SRP recepto 94.6 0.027 9.2E-07 59.5 5.1 28 362-389 97-124 (302)
292 2ged_A SR-beta, signal recogni 94.6 0.031 1.1E-06 53.2 5.1 47 337-389 26-72 (193)
293 2j37_W Signal recognition part 94.6 0.044 1.5E-06 62.0 7.1 36 363-398 99-137 (504)
294 3e70_C DPA, signal recognition 94.6 0.056 1.9E-06 57.8 7.5 28 362-389 126-153 (328)
295 3eph_A TRNA isopentenyltransfe 94.6 0.018 6.1E-07 63.5 3.7 34 365-398 2-35 (409)
296 2xxa_A Signal recognition part 94.6 0.053 1.8E-06 60.2 7.5 71 363-433 98-192 (433)
297 1x6v_B Bifunctional 3'-phospho 94.5 0.026 8.9E-07 65.5 5.0 38 364-401 51-91 (630)
298 2pl3_A Probable ATP-dependent 94.5 0.075 2.6E-06 52.7 7.8 53 328-382 24-79 (236)
299 3lnc_A Guanylate kinase, GMP k 94.5 0.018 6.3E-07 57.4 3.2 27 363-389 25-52 (231)
300 3fe2_A Probable ATP-dependent 94.5 0.055 1.9E-06 54.2 6.8 55 327-383 27-84 (242)
301 1xx6_A Thymidine kinase; NESG, 94.4 0.073 2.5E-06 52.5 7.4 71 365-436 8-93 (191)
302 1htw_A HI0065; nucleotide-bind 94.4 0.027 9.3E-07 53.8 4.1 28 362-389 30-57 (158)
303 1z6g_A Guanylate kinase; struc 94.4 0.022 7.7E-07 56.7 3.6 27 363-389 21-47 (218)
304 3p32_A Probable GTPase RV1496/ 94.4 0.15 5.1E-06 54.7 10.3 34 364-397 78-114 (355)
305 4f4c_A Multidrug resistance pr 94.4 0.035 1.2E-06 69.8 6.1 28 362-389 1102-1129(1321)
306 1znw_A Guanylate kinase, GMP k 94.4 0.025 8.7E-07 55.5 3.9 28 363-390 18-45 (207)
307 4aby_A DNA repair protein RECN 94.3 0.094 3.2E-06 56.8 8.7 23 367-389 62-84 (415)
308 1bif_A 6-phosphofructo-2-kinas 94.2 0.099 3.4E-06 58.2 8.9 41 364-404 38-81 (469)
309 1ls1_A Signal recognition part 94.2 0.083 2.8E-06 55.4 7.7 72 364-435 97-191 (295)
310 2gza_A Type IV secretion syste 94.2 0.02 6.8E-07 61.9 3.0 73 362-434 172-262 (361)
311 1vec_A ATP-dependent RNA helic 94.2 0.057 1.9E-06 52.2 6.0 19 365-383 40-58 (206)
312 1wb9_A DNA mismatch repair pro 94.1 0.14 4.9E-06 61.0 10.4 25 364-388 606-630 (800)
313 2og2_A Putative signal recogni 94.1 0.037 1.3E-06 60.0 4.8 28 362-389 154-181 (359)
314 3bor_A Human initiation factor 94.1 0.048 1.6E-06 54.6 5.3 55 327-383 28-85 (237)
315 2jeo_A Uridine-cytidine kinase 94.1 0.028 9.6E-07 56.8 3.6 30 363-392 23-52 (245)
316 2p6r_A Afuhel308 helicase; pro 94.1 0.032 1.1E-06 65.1 4.6 33 365-397 40-75 (702)
317 4b3f_X DNA-binding protein smu 94.1 0.24 8.1E-06 57.4 11.9 33 367-399 207-242 (646)
318 2v3c_C SRP54, signal recogniti 94.0 0.051 1.8E-06 60.3 6.0 36 364-399 98-136 (432)
319 2zj8_A DNA helicase, putative 94.0 0.12 4.2E-06 60.4 9.4 20 364-383 38-57 (720)
320 2v9p_A Replication protein E1; 94.0 0.035 1.2E-06 58.9 4.3 30 360-389 121-150 (305)
321 3gmt_A Adenylate kinase; ssgci 94.0 0.031 1.1E-06 57.0 3.7 34 368-403 11-44 (230)
322 2va8_A SSO2462, SKI2-type heli 94.0 0.12 4.1E-06 60.3 9.2 55 328-384 7-65 (715)
323 1j8m_F SRP54, signal recogniti 93.9 0.1 3.5E-06 54.9 7.5 69 365-433 98-189 (297)
324 1a7j_A Phosphoribulokinase; tr 93.8 0.027 9.1E-07 59.1 3.0 38 365-402 5-45 (290)
325 1gtv_A TMK, thymidylate kinase 93.8 0.015 5.1E-07 56.7 1.0 24 367-390 2-25 (214)
326 1s96_A Guanylate kinase, GMP k 93.8 0.039 1.3E-06 55.4 4.0 28 363-390 14-41 (219)
327 1sky_E F1-ATPase, F1-ATP synth 93.8 0.062 2.1E-06 60.3 6.0 25 365-389 151-175 (473)
328 1c9k_A COBU, adenosylcobinamid 93.8 0.041 1.4E-06 54.0 4.0 32 368-400 2-33 (180)
329 1q0u_A Bstdead; DEAD protein, 93.7 0.095 3.2E-06 51.5 6.7 18 366-383 42-59 (219)
330 3pey_A ATP-dependent RNA helic 93.7 0.12 4.2E-06 54.3 8.0 22 364-385 43-64 (395)
331 2j0s_A ATP-dependent RNA helic 93.7 0.19 6.6E-06 53.6 9.6 57 327-385 35-94 (410)
332 3hdt_A Putative kinase; struct 93.7 0.037 1.3E-06 55.9 3.7 30 366-395 15-44 (223)
333 3ber_A Probable ATP-dependent 93.7 0.13 4.5E-06 51.9 7.8 55 327-383 41-98 (249)
334 3tqc_A Pantothenate kinase; bi 93.6 0.1 3.4E-06 55.7 7.1 28 363-390 90-117 (321)
335 1m8p_A Sulfate adenylyltransfe 93.6 0.11 3.7E-06 59.7 7.8 40 364-403 395-438 (573)
336 3j16_B RLI1P; ribosome recycli 93.6 0.19 6.4E-06 58.2 9.7 26 364-389 102-127 (608)
337 4eaq_A DTMP kinase, thymidylat 93.4 0.046 1.6E-06 55.1 3.8 33 364-396 25-59 (229)
338 1xti_A Probable ATP-dependent 93.4 0.43 1.5E-05 50.3 11.6 56 329-386 8-66 (391)
339 2yhs_A FTSY, cell division pro 93.4 0.054 1.8E-06 61.2 4.6 28 362-389 290-317 (503)
340 3g5u_A MCG1178, multidrug resi 93.3 0.15 5.2E-06 63.8 9.1 28 362-389 413-440 (1284)
341 1sq5_A Pantothenate kinase; P- 93.2 0.046 1.6E-06 57.5 3.6 28 363-390 78-105 (308)
342 2fwr_A DNA repair protein RAD2 93.1 0.23 7.8E-06 54.5 9.1 33 367-399 110-142 (472)
343 3oiy_A Reverse gyrase helicase 93.0 0.086 2.9E-06 56.8 5.5 21 365-385 36-56 (414)
344 2ffh_A Protein (FFH); SRP54, s 93.0 0.27 9.3E-06 54.4 9.6 35 364-398 97-134 (425)
345 2i3b_A HCR-ntpase, human cance 93.0 0.048 1.6E-06 53.6 3.2 23 367-389 3-25 (189)
346 1s2m_A Putative ATP-dependent 93.0 0.24 8.2E-06 52.6 8.9 58 327-386 19-79 (400)
347 2j9r_A Thymidine kinase; TK1, 92.9 0.13 4.5E-06 51.8 6.2 31 367-397 30-63 (214)
348 1ewq_A DNA mismatch repair pro 92.9 0.29 9.8E-06 58.1 10.1 24 365-388 576-599 (765)
349 3i5x_A ATP-dependent RNA helic 92.9 0.34 1.2E-05 54.5 10.3 18 364-381 110-127 (563)
350 1p5z_B DCK, deoxycytidine kina 92.8 0.033 1.1E-06 56.8 1.7 32 363-394 22-54 (263)
351 1np6_A Molybdopterin-guanine d 92.8 0.066 2.2E-06 52.0 3.8 27 363-389 4-30 (174)
352 3eiq_A Eukaryotic initiation f 92.8 0.13 4.4E-06 54.8 6.5 53 329-383 40-95 (414)
353 3sqw_A ATP-dependent RNA helic 92.8 0.33 1.1E-05 55.1 10.2 55 327-381 15-76 (579)
354 3tqf_A HPR(Ser) kinase; transf 92.8 0.076 2.6E-06 52.1 4.1 28 365-393 16-43 (181)
355 2ocp_A DGK, deoxyguanosine kin 92.7 0.072 2.5E-06 53.4 4.1 29 365-393 2-31 (241)
356 1yrb_A ATP(GTP)binding protein 92.7 0.32 1.1E-05 48.7 8.9 34 364-397 13-48 (262)
357 3aez_A Pantothenate kinase; tr 92.6 0.067 2.3E-06 56.7 3.7 28 362-389 87-114 (312)
358 3tif_A Uncharacterized ABC tra 92.5 0.049 1.7E-06 55.2 2.5 29 362-390 28-56 (235)
359 1rj9_A FTSY, signal recognitio 92.5 0.081 2.8E-06 55.9 4.2 26 364-389 101-126 (304)
360 3def_A T7I23.11 protein; chlor 92.4 0.3 1E-05 49.7 8.3 25 365-389 36-60 (262)
361 2pcj_A ABC transporter, lipopr 92.4 0.043 1.5E-06 55.2 1.9 28 363-390 28-55 (224)
362 2qm8_A GTPase/ATPase; G protei 92.4 0.18 6.3E-06 53.7 6.9 27 363-389 53-79 (337)
363 3dz8_A RAS-related protein RAB 92.3 0.29 1E-05 46.5 7.7 23 367-389 25-47 (191)
364 3kta_A Chromosome segregation 92.3 0.085 2.9E-06 50.1 3.9 24 367-390 28-51 (182)
365 2z0m_A 337AA long hypothetical 92.3 0.21 7.2E-06 51.4 7.1 33 366-398 32-64 (337)
366 3ozx_A RNAse L inhibitor; ATP 92.3 0.31 1.1E-05 55.5 9.0 27 363-389 292-318 (538)
367 2o8b_B DNA mismatch repair pro 92.2 0.4 1.4E-05 58.7 10.4 22 365-386 789-810 (1022)
368 4i1u_A Dephospho-COA kinase; s 92.2 0.16 5.6E-06 50.9 5.8 36 366-404 10-45 (210)
369 2onk_A Molybdate/tungstate ABC 92.2 0.064 2.2E-06 54.6 2.9 28 362-390 22-49 (240)
370 1b0u_A Histidine permease; ABC 92.1 0.057 2E-06 55.7 2.5 29 362-390 29-57 (262)
371 2fh5_B SR-beta, signal recogni 92.0 0.88 3E-05 43.8 10.8 24 365-388 7-30 (214)
372 3q72_A GTP-binding protein RAD 92.0 0.11 3.8E-06 47.7 4.1 22 367-388 4-25 (166)
373 3ice_A Transcription terminati 92.0 0.26 8.8E-06 54.2 7.5 33 364-396 173-210 (422)
374 1nrj_B SR-beta, signal recogni 91.9 0.1 3.5E-06 50.7 4.0 26 364-389 11-36 (218)
375 2f9l_A RAB11B, member RAS onco 91.9 0.084 2.9E-06 50.8 3.3 23 367-389 7-29 (199)
376 1oix_A RAS-related protein RAB 91.9 0.082 2.8E-06 50.8 3.2 23 367-389 31-53 (191)
377 2zu0_C Probable ATP-dependent 91.9 0.074 2.5E-06 55.0 3.0 28 362-389 43-70 (267)
378 3b85_A Phosphate starvation-in 91.9 0.074 2.5E-06 53.0 2.9 24 365-388 22-45 (208)
379 1xjc_A MOBB protein homolog; s 91.9 0.096 3.3E-06 50.8 3.6 33 365-397 4-39 (169)
380 1mv5_A LMRA, multidrug resista 91.8 0.058 2E-06 54.8 2.1 28 362-389 25-52 (243)
381 1g6h_A High-affinity branched- 91.8 0.055 1.9E-06 55.6 1.9 28 363-390 31-58 (257)
382 2dyk_A GTP-binding protein; GT 91.8 0.087 3E-06 48.0 3.1 23 367-389 3-25 (161)
383 3g5u_A MCG1178, multidrug resi 91.8 0.23 8E-06 62.2 7.9 28 362-389 1056-1083(1284)
384 2ghi_A Transport protein; mult 91.8 0.067 2.3E-06 55.1 2.5 29 362-390 43-71 (260)
385 1wp9_A ATP-dependent RNA helic 91.8 0.28 9.4E-06 52.6 7.5 32 367-398 25-60 (494)
386 2olj_A Amino acid ABC transpor 91.7 0.068 2.3E-06 55.3 2.5 29 362-390 47-75 (263)
387 2d2e_A SUFC protein; ABC-ATPas 91.7 0.069 2.4E-06 54.6 2.5 26 363-388 27-52 (250)
388 2ixe_A Antigen peptide transpo 91.7 0.069 2.4E-06 55.4 2.5 29 362-390 42-70 (271)
389 3cr8_A Sulfate adenylyltranfer 91.6 0.076 2.6E-06 60.8 3.0 40 364-403 368-411 (552)
390 2pze_A Cystic fibrosis transme 91.6 0.061 2.1E-06 54.2 2.0 29 362-390 31-59 (229)
391 1z2a_A RAS-related protein RAB 91.6 0.093 3.2E-06 48.1 3.0 23 366-388 6-28 (168)
392 2iw3_A Elongation factor 3A; a 91.5 0.31 1.1E-05 59.3 8.2 25 363-387 459-483 (986)
393 2gks_A Bifunctional SAT/APS ki 91.5 0.34 1.2E-05 55.2 8.2 40 364-403 371-413 (546)
394 1ji0_A ABC transporter; ATP bi 91.5 0.064 2.2E-06 54.5 2.0 28 363-390 30-57 (240)
395 3sop_A Neuronal-specific septi 91.5 0.096 3.3E-06 54.2 3.3 23 367-389 4-26 (270)
396 1vpl_A ABC transporter, ATP-bi 91.4 0.077 2.6E-06 54.6 2.5 29 362-390 38-66 (256)
397 2yz2_A Putative ABC transporte 91.4 0.078 2.7E-06 54.7 2.5 29 362-390 30-58 (266)
398 1sgw_A Putative ABC transporte 91.4 0.085 2.9E-06 52.9 2.7 28 363-390 33-60 (214)
399 3ly5_A ATP-dependent RNA helic 91.4 0.28 9.6E-06 49.9 6.7 18 366-383 92-109 (262)
400 3vkw_A Replicase large subunit 91.3 0.43 1.5E-05 53.1 8.5 25 364-388 160-184 (446)
401 1svi_A GTP-binding protein YSX 91.3 0.083 2.8E-06 50.1 2.4 25 364-388 22-46 (195)
402 2qi9_C Vitamin B12 import ATP- 91.2 0.07 2.4E-06 54.7 2.0 29 362-390 23-51 (249)
403 2p67_A LAO/AO transport system 91.2 0.4 1.4E-05 51.0 7.9 27 363-389 54-80 (341)
404 1fuu_A Yeast initiation factor 91.2 0.16 5.5E-06 53.6 4.7 54 327-382 19-75 (394)
405 3fvq_A Fe(3+) IONS import ATP- 91.1 0.088 3E-06 57.1 2.7 27 363-389 28-54 (359)
406 2ce2_X GTPase HRAS; signaling 91.1 0.12 4.2E-06 46.8 3.3 23 367-389 5-27 (166)
407 2lkc_A Translation initiation 91.1 0.14 4.8E-06 47.5 3.8 25 364-388 7-31 (178)
408 2ihy_A ABC transporter, ATP-bi 91.0 0.075 2.6E-06 55.4 2.0 29 362-390 44-72 (279)
409 1kao_A RAP2A; GTP-binding prot 91.0 0.13 4.6E-06 46.7 3.5 23 366-388 4-26 (167)
410 1lw7_A Transcriptional regulat 91.0 0.11 3.7E-06 55.8 3.3 28 365-392 170-197 (365)
411 2wji_A Ferrous iron transport 91.0 0.11 3.6E-06 48.6 2.8 22 367-388 5-26 (165)
412 1u8z_A RAS-related protein RAL 90.9 0.14 4.7E-06 46.7 3.4 23 366-388 5-27 (168)
413 2nq2_C Hypothetical ABC transp 90.8 0.079 2.7E-06 54.4 1.9 28 363-390 29-56 (253)
414 2zej_A Dardarin, leucine-rich 90.8 0.092 3.1E-06 49.9 2.2 22 367-388 4-25 (184)
415 2f7s_A C25KG, RAS-related prot 90.8 0.93 3.2E-05 43.7 9.5 23 366-388 26-48 (217)
416 1ek0_A Protein (GTP-binding pr 90.8 0.14 4.9E-06 46.8 3.5 23 367-389 5-27 (170)
417 1gm5_A RECG; helicase, replica 90.8 0.71 2.4E-05 54.9 10.2 36 363-398 387-425 (780)
418 2yyz_A Sugar ABC transporter, 90.7 0.11 3.8E-06 56.2 3.0 27 363-389 27-53 (359)
419 1z0j_A RAB-22, RAS-related pro 90.7 0.14 4.9E-06 46.9 3.4 24 366-389 7-30 (170)
420 2it1_A 362AA long hypothetical 90.7 0.11 3.8E-06 56.3 3.0 27 363-389 27-53 (362)
421 2nzj_A GTP-binding protein REM 90.7 0.12 4E-06 47.9 2.7 23 366-388 5-27 (175)
422 3lxw_A GTPase IMAP family memb 90.6 0.35 1.2E-05 48.9 6.5 25 364-388 20-44 (247)
423 4edh_A DTMP kinase, thymidylat 90.6 0.22 7.5E-06 49.7 4.9 33 365-397 6-41 (213)
424 3fht_A ATP-dependent RNA helic 90.6 0.37 1.3E-05 51.1 7.0 53 328-382 24-81 (412)
425 2f1r_A Molybdopterin-guanine d 90.6 0.084 2.9E-06 51.0 1.8 24 366-389 3-26 (171)
426 3dkp_A Probable ATP-dependent 90.6 0.68 2.3E-05 45.9 8.5 17 366-382 67-83 (245)
427 3cph_A RAS-related protein SEC 90.6 0.14 4.9E-06 49.2 3.4 24 365-388 20-43 (213)
428 1upt_A ARL1, ADP-ribosylation 90.5 0.17 5.8E-06 46.6 3.7 24 365-388 7-30 (171)
429 1z08_A RAS-related protein RAB 90.5 0.14 4.8E-06 47.1 3.2 23 366-388 7-29 (170)
430 1g16_A RAS-related protein SEC 90.5 0.14 4.9E-06 46.9 3.2 22 367-388 5-26 (170)
431 3fmo_B ATP-dependent RNA helic 90.5 0.46 1.6E-05 49.6 7.4 53 328-382 91-148 (300)
432 2gj8_A MNME, tRNA modification 90.5 0.13 4.4E-06 48.6 2.9 24 365-388 4-27 (172)
433 3lv8_A DTMP kinase, thymidylat 90.5 0.16 5.3E-06 51.8 3.7 29 364-392 26-57 (236)
434 1ky3_A GTP-binding protein YPT 90.5 0.13 4.5E-06 47.7 2.9 24 365-388 8-31 (182)
435 1wms_A RAB-9, RAB9, RAS-relate 90.4 0.16 5.4E-06 47.2 3.5 23 366-388 8-30 (177)
436 1z47_A CYSA, putative ABC-tran 90.4 0.11 3.6E-06 56.3 2.5 27 363-389 39-65 (355)
437 1wrb_A DJVLGB; RNA helicase, D 90.4 0.25 8.7E-06 49.5 5.2 18 366-383 61-78 (253)
438 2wjg_A FEOB, ferrous iron tran 90.4 0.13 4.6E-06 48.3 3.0 23 366-388 8-30 (188)
439 2erx_A GTP-binding protein DI- 90.3 0.14 4.7E-06 47.0 2.9 22 367-388 5-26 (172)
440 1r2q_A RAS-related protein RAB 90.3 0.16 5.4E-06 46.5 3.3 23 366-388 7-29 (170)
441 2xtp_A GTPase IMAP family memb 90.3 0.84 2.9E-05 45.9 9.0 25 364-388 21-45 (260)
442 3d31_A Sulfate/molybdate ABC t 90.3 0.098 3.3E-06 56.4 2.1 27 363-389 24-50 (348)
443 3v9p_A DTMP kinase, thymidylat 90.3 0.22 7.6E-06 50.4 4.6 32 365-396 25-63 (227)
444 2hxs_A RAB-26, RAS-related pro 90.2 0.16 5.4E-06 47.2 3.2 23 366-388 7-29 (178)
445 1c1y_A RAS-related protein RAP 90.2 0.16 5.6E-06 46.3 3.3 22 367-388 5-26 (167)
446 3ux8_A Excinuclease ABC, A sub 90.2 0.33 1.1E-05 56.4 6.6 24 362-385 345-368 (670)
447 2orv_A Thymidine kinase; TP4A 90.2 0.71 2.4E-05 47.1 8.2 70 364-436 18-102 (234)
448 3q85_A GTP-binding protein REM 90.1 0.14 4.7E-06 47.2 2.8 21 367-387 4-24 (169)
449 1pui_A ENGB, probable GTP-bind 90.1 0.074 2.5E-06 51.3 0.9 28 362-389 23-50 (210)
450 3h1t_A Type I site-specific re 90.1 0.5 1.7E-05 53.7 7.8 44 335-388 178-221 (590)
451 3bc1_A RAS-related protein RAB 90.1 0.18 6E-06 47.3 3.5 23 366-388 12-34 (195)
452 2pjz_A Hypothetical protein ST 90.1 0.12 4E-06 53.5 2.4 25 365-389 30-54 (263)
453 1g29_1 MALK, maltose transport 90.0 0.12 4.1E-06 56.2 2.5 27 363-389 27-53 (372)
454 2bbs_A Cystic fibrosis transme 90.0 0.12 4E-06 54.3 2.4 28 362-389 61-88 (290)
455 3tmk_A Thymidylate kinase; pho 90.0 0.29 1E-05 49.1 5.2 30 365-394 5-34 (216)
456 1g8f_A Sulfate adenylyltransfe 90.0 0.13 4.4E-06 58.4 2.8 28 364-391 394-421 (511)
457 1r8s_A ADP-ribosylation factor 90.0 0.17 5.9E-06 46.2 3.3 22 367-388 2-23 (164)
458 2atv_A RERG, RAS-like estrogen 89.9 0.18 6.2E-06 48.1 3.5 25 364-388 27-51 (196)
459 2y8e_A RAB-protein 6, GH09086P 89.9 0.17 5.8E-06 46.8 3.2 23 366-388 15-37 (179)
460 3clv_A RAB5 protein, putative; 89.9 0.19 6.5E-06 47.3 3.5 24 365-388 7-30 (208)
461 3fmp_B ATP-dependent RNA helic 89.8 1.1 3.7E-05 49.3 10.1 58 328-387 91-154 (479)
462 1z0f_A RAB14, member RAS oncog 89.7 0.18 6.3E-06 46.6 3.3 24 366-389 16-39 (179)
463 2npi_A Protein CLP1; CLP1-PCF1 89.7 0.17 5.7E-06 56.6 3.5 28 362-389 135-162 (460)
464 2fn4_A P23, RAS-related protei 89.7 0.18 6.2E-06 46.7 3.2 23 366-388 10-32 (181)
465 2gk6_A Regulator of nonsense t 89.7 0.17 5.9E-06 58.4 3.6 33 367-399 197-233 (624)
466 4a2p_A RIG-I, retinoic acid in 89.6 0.9 3.1E-05 50.3 9.3 23 366-388 23-45 (556)
467 4dsu_A GTPase KRAS, isoform 2B 89.6 0.19 6.4E-06 47.1 3.3 24 366-389 5-28 (189)
468 3tbk_A RIG-I helicase domain; 89.6 2.4 8.2E-05 46.6 12.7 23 366-388 20-42 (555)
469 3l9o_A ATP-dependent RNA helic 89.6 0.54 1.8E-05 58.1 8.1 33 366-398 200-235 (1108)
470 2wsm_A Hydrogenase expression/ 89.5 0.2 6.7E-06 48.9 3.4 25 365-389 30-54 (221)
471 1oxx_K GLCV, glucose, ABC tran 89.5 0.099 3.4E-06 56.4 1.4 27 363-389 29-55 (353)
472 2db3_A ATP-dependent RNA helic 89.5 0.52 1.8E-05 51.5 7.2 53 327-381 54-109 (434)
473 2a9k_A RAS-related protein RAL 89.5 0.2 6.7E-06 46.7 3.3 23 366-388 19-41 (187)
474 2p5s_A RAS and EF-hand domain 89.5 0.2 6.7E-06 48.1 3.4 25 364-388 27-51 (199)
475 3con_A GTPase NRAS; structural 89.5 0.2 6.7E-06 47.4 3.3 24 366-389 22-45 (190)
476 2bme_A RAB4A, RAS-related prot 89.5 0.19 6.4E-06 47.1 3.1 23 366-388 11-33 (186)
477 3t1o_A Gliding protein MGLA; G 89.4 0.2 6.8E-06 47.2 3.3 24 366-389 15-38 (198)
478 1m7b_A RND3/RHOE small GTP-bin 89.4 0.19 6.5E-06 47.5 3.2 23 366-388 8-30 (184)
479 2efe_B Small GTP-binding prote 89.4 0.2 6.9E-06 46.6 3.3 23 366-388 13-35 (181)
480 2oil_A CATX-8, RAS-related pro 89.4 0.2 6.8E-06 47.5 3.3 23 366-388 26-48 (193)
481 1m2o_B GTP-binding protein SAR 89.1 0.23 7.8E-06 47.5 3.5 23 366-388 24-46 (190)
482 2cxx_A Probable GTP-binding pr 89.1 0.17 6E-06 47.4 2.6 22 367-388 3-24 (190)
483 3fho_A ATP-dependent RNA helic 89.1 0.58 2E-05 52.3 7.3 19 365-383 158-176 (508)
484 2hf9_A Probable hydrogenase ni 89.1 0.23 7.9E-06 48.5 3.6 25 365-389 38-62 (226)
485 3pqc_A Probable GTP-binding pr 89.0 0.23 8E-06 46.6 3.5 23 366-388 24-46 (195)
486 3bwd_D RAC-like GTP-binding pr 89.0 0.27 9.3E-06 45.7 3.9 25 365-389 8-32 (182)
487 2g6b_A RAS-related protein RAB 89.0 0.24 8.3E-06 46.0 3.5 25 365-389 10-34 (180)
488 2b6h_A ADP-ribosylation factor 88.9 0.25 8.7E-06 47.3 3.7 26 363-388 27-52 (192)
489 1moz_A ARL1, ADP-ribosylation 88.9 0.22 7.7E-06 46.5 3.2 25 363-387 16-40 (183)
490 3tw8_B RAS-related protein RAB 88.9 0.21 7.1E-06 46.3 2.9 23 366-388 10-32 (181)
491 3kkq_A RAS-related protein M-R 88.9 0.23 7.9E-06 46.5 3.3 23 366-388 19-41 (183)
492 2v6i_A RNA helicase; membrane, 88.9 0.48 1.6E-05 52.0 6.3 22 365-386 2-24 (431)
493 1mh1_A RAC1; GTP-binding, GTPa 88.8 0.23 8E-06 46.3 3.3 22 367-388 7-28 (186)
494 2gf9_A RAS-related protein RAB 88.7 0.24 8.1E-06 46.9 3.3 24 366-389 23-46 (189)
495 3tkl_A RAS-related protein RAB 88.6 0.24 8.3E-06 46.8 3.3 23 366-388 17-39 (196)
496 2www_A Methylmalonic aciduria 88.6 0.5 1.7E-05 50.6 6.1 25 365-389 74-98 (349)
497 1x3s_A RAS-related protein RAB 88.6 0.24 8.2E-06 46.7 3.2 23 366-388 16-38 (195)
498 1ksh_A ARF-like protein 2; sma 88.6 0.2 6.9E-06 47.1 2.7 25 364-388 17-41 (186)
499 4dcu_A GTP-binding protein ENG 88.6 1.3 4.6E-05 48.8 9.7 23 366-388 24-46 (456)
500 2aka_B Dynamin-1; fusion prote 88.6 0.4 1.4E-05 49.0 5.1 24 366-389 27-50 (299)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3.5e-71 Score=623.08 Aligned_cols=375 Identities=54% Similarity=0.878 Sum_probs=326.1
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
.+.++|+||+|++++|++|++++.+++++..|..+|.+.|+++||+||||||||+||+++|+++++||+.++++++.+.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 004770 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (731)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (731)
+|.+..+++.+|+.|+..+||||||||+|.++..++.. ..+.+++..+++++||.+|+++..+.+++||++||+++.||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~-~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG-LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc-cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999877543 23456778899999999999988888999999999999999
Q ss_pred ccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccH
Q 004770 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (731)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~ 565 (731)
++++||||||+.+.+++|+.++|.+|++.++++. ++.+++++..++..++|++++||.++|++|+..|.+++...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC--CCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecH
Confidence 9999999999999999999999999999999764 56678899999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCCccccc
Q 004770 566 IDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLL 645 (731)
Q Consensus 566 ~d~~~Alervi~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~~~~~~ 645 (731)
+||.+|+++++.+.+++...+++++++.+||||+|||+++ +++|+.+++++++|+||+..++||+++.|.+|++++
T Consensus 247 ~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~----~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~ 322 (476)
T 2ce7_A 247 KDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVS----TVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLV 322 (476)
T ss_dssp HHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHH----HHSTTCCCCCEEECC-----------------CCSC
T ss_pred HHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHh----hccCCccccceeeeecCcccccceEEEcCccccccc
Confidence 9999999999999888888889999999999999999986 578999999999999996489999999999999999
Q ss_pred cHHHHHHHHHHHhhhHHHHHHhcCCCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeeccc
Q 004770 646 FIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATL 708 (731)
Q Consensus 646 ~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~~ 708 (731)
|+++|+++|+++|||||||+++| |++||||+|||++||+||+.||++||||+++|+++|...
T Consensus 323 ~~~~l~~~i~~~l~Gr~ae~~~~-g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~ 384 (476)
T 2ce7_A 323 SRNELLDKLTALLGGRAAEEVVF-GDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKE 384 (476)
T ss_dssp BHHHHHHHHHHHTHHHHHHHHHH-SSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-
T ss_pred CHHHHHHHHHHHHhHHHHHhhhc-CCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCC
Confidence 99999999999999999999999 699999999999999999999999999999999998754
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-67 Score=597.18 Aligned_cols=379 Identities=51% Similarity=0.812 Sum_probs=350.0
Q ss_pred cccccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 321 ~~~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
++....+.++|+||+|++++|++|++++.+++++..|..++.+.|+|+||+||||||||+||+++|++++.+|+.+++++
T Consensus 20 ~~~~~~~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~ 99 (499)
T 2dhr_A 20 RVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 99 (499)
T ss_dssp EEECSCCCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eeeccCCCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence 33333389999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
+.+.+++....+++.+|+.+....|||+||||||.++..++... ...+++..++++++|.+|+++..+..+++|++||+
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~-~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~ 178 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 178 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST-TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSC
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc-CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCC
Confidence 99999999999999999999888899999999999987765321 23467788999999999999988888999999999
Q ss_pred CCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCC
Q 004770 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (731)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~ 560 (731)
|+.||++++||||||+++.|++|+.++|.+||+.|+++ .++.+++++..++..++|++++||+++|++|+..|.++++
T Consensus 179 p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~ 256 (499)
T 2dhr_A 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 256 (499)
T ss_dssp GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999864 4677889999999999999999999999999999999888
Q ss_pred ccccHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCC-
Q 004770 561 VVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPAN- 639 (731)
Q Consensus 561 ~~It~~d~~~Alervi~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~- 639 (731)
..|+++||.+|+++++.+.+++...+++++++.++|||+|||+++ +++++.++|++++|+|| ++++||++ |.
T Consensus 257 ~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~----~~l~~~~~v~~~~i~pr-~~~~g~~~--p~q 329 (499)
T 2dhr_A 257 RKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAA----HFLEHADGVHKVTIVPR-GRALGFMM--PRR 329 (499)
T ss_dssp SSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHH----CCSSSCCCCCCEESCCS-SCTTCSSH--HHH
T ss_pred CccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHH----hhcCCCCeeeEEEeecC-CCcCcccc--cch
Confidence 899999999999999999888888899999999999999999986 57888999999999999 57999998 55
Q ss_pred CccccccHHHHHHHHHHHhhhHHHHHHhcCCCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeecccCC
Q 004770 640 EDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSS 710 (731)
Q Consensus 640 ~~~~~~~~~~l~~~i~~~LgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~~~~ 710 (731)
++++++|+.+|+++|+++|||||||+++| |++||||+|||++||+||+.||++||||+++|++++.....
T Consensus 330 ~~~~~~t~~~l~~~i~~~lgGr~ae~~~~-g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~ 399 (499)
T 2dhr_A 330 EDMLHWSRKRLLDQIAVALAGRAAEEIVF-DDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRED 399 (499)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHS-CSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCC
T ss_pred hhhhccCHHHHHHHHHHHhhhHhHHHhhh-cccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCc
Confidence 78899999999999999999999999999 69999999999999999999999999999999999876443
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-52 Score=458.89 Aligned_cols=254 Identities=38% Similarity=0.650 Sum_probs=239.6
Q ss_pred ccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
..++.|+++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++++|+.+++++
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 44667999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
+.++|+|++++.++++|..|+..+||||||||||+++..|.... ...+.+..+++++||.+||++....+|+||+|||+
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC-CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 99999999999999999999999999999999999998875432 23456778899999999999999999999999999
Q ss_pred CCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCC
Q 004770 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (731)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~ 560 (731)
|+.|||||+||||||++|+|++|+.++|.+||+.|+++ .++..++|++.||+.|+||||+||+++|++|++.|.++++
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~ 374 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK--MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR 374 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999976 4667899999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcc
Q 004770 561 VVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 561 ~~It~~d~~~Alervi~g 578 (731)
..|+++||..|+++++..
T Consensus 375 ~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 375 IHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp SBCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCc
Confidence 999999999999998754
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-51 Score=450.99 Aligned_cols=254 Identities=40% Similarity=0.671 Sum_probs=239.6
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.++.|+++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++++|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 4678999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
.++|+|++++.++.+|..|+..+||||||||||+++..|.... ...+.+..+++++||++||++..+.+|+||+|||+|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 9999999999999999999999999999999999999886542 234557788999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCc
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~ 561 (731)
+.|||||+||||||++|+|++|+.++|.+||+.|+++ +++.+++|++.||..|+||||+||+++|++|++.|.++++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~ 409 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK--MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM 409 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT--SCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC--CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999976 46778999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhccc
Q 004770 562 VVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 562 ~It~~d~~~Alervi~g~ 579 (731)
.|+++||.+|++++..+.
T Consensus 410 ~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 410 QVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp CBCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCCC
Confidence 999999999999987643
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-51 Score=451.85 Aligned_cols=258 Identities=41% Similarity=0.670 Sum_probs=241.8
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.++.|+|+|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|||||||||||||+||+|+|++++++|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 4577999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
.++|+|++++.++.+|..|+..+||||||||+|+++..|.... .+......++++++|.+||++....+|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcC-CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 9999999999999999999999999999999999998886532 234566788999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCc
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~ 561 (731)
+.||+||+||||||++|+|++|+.++|.+||+.|+++ +++..+++++.||+.|+||||+||+++|++|++.|.++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT--SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999975 46778999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcccchhh
Q 004770 562 VVEKIDFIHAVERSIAGIEKKT 583 (731)
Q Consensus 562 ~It~~d~~~Alervi~g~~~~~ 583 (731)
.|+++||.+|+++++.+.++.+
T Consensus 437 ~it~~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp SBCHHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHhcCcccch
Confidence 9999999999999998876543
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-50 Score=446.10 Aligned_cols=253 Identities=41% Similarity=0.650 Sum_probs=237.3
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.++.|+++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++++|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 4567999999999999999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
.++|+|.+++.++.+|..|+..+||||||||+|+++..|.... ...+.+..+++++||++||++..+.+|+||+|||+|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999998886532 234566788999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCc
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~ 561 (731)
+.|||||+||||||++|+|++|+.++|.+||+.|+++. ++..+++++.||+.|+||||+||.++|++|++.|.++++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~ 408 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM--TTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS 408 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS--CBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC--CCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999864 6678999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcc
Q 004770 562 VVEKIDFIHAVERSIAG 578 (731)
Q Consensus 562 ~It~~d~~~Alervi~g 578 (731)
.|+++||.+|++++...
T Consensus 409 ~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 409 SVKHEDFVEGISEVQAR 425 (434)
T ss_dssp SBCHHHHHHHHHSCSSS
T ss_pred CcCHHHHHHHHHHHhCC
Confidence 99999999999876543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-49 Score=443.57 Aligned_cols=253 Identities=42% Similarity=0.670 Sum_probs=238.2
Q ss_pred ccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
..++.|+++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++++|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 34567999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
+.++|+|+++..++.+|..|+..+||||||||||+++..|.... ...+.+..+++++||.+||++....+|+||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999998885432 23456778899999999999999999999999999
Q ss_pred CCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCC
Q 004770 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (731)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~ 560 (731)
|+.|||||+||||||++|+|++|+.++|.+||+.|+++. ++..++|++.||+.|+||||+||.++|++|++.|.++++
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV--KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS--CBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC--CCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999764 567889999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhc
Q 004770 561 VVVEKIDFIHAVERSIA 577 (731)
Q Consensus 561 ~~It~~d~~~Alervi~ 577 (731)
..|+++||.+|++++..
T Consensus 408 ~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAE 424 (437)
T ss_dssp SSBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-49 Score=438.13 Aligned_cols=252 Identities=44% Similarity=0.654 Sum_probs=236.7
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++++|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 4567899999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
.++|+|.++..++++|..|+..+||||||||+|+++..|.... ...+.+..+++++||++||++....+|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999998885432 234567789999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEee-CCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCC
Q 004770 482 DVLDPALRRPGRFDRVVMVE-TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~-~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~ 560 (731)
+.|||||+||||||++|+|+ +|+.++|.+||+.|+++. ++.+++|++.||..|+||||+||.++|++|++.|.++++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~--~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM--SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS--CBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC--CCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999996 899999999999999764 567889999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhc
Q 004770 561 VVVEKIDFIHAVERSIA 577 (731)
Q Consensus 561 ~~It~~d~~~Alervi~ 577 (731)
..|+++||.+|+.+++.
T Consensus 400 ~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVK 416 (428)
T ss_dssp SSBCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhC
Confidence 99999999999988763
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.1e-47 Score=446.31 Aligned_cols=313 Identities=36% Similarity=0.674 Sum_probs=228.7
Q ss_pred eEEEecCCCCCcchHHH--HHhCCceeccCCC---------------------------CCcchHHHHHHHHHHHHHHHH
Q 004770 243 IVYTTTRPSDIKTPYEK--MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLAG 293 (731)
Q Consensus 243 ~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~ 293 (731)
++.+|++|.+++..+.+ +++..|++..|+. .++||.+++|..++-.+.+..
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A 422 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 45788888877655543 3444555554442 267899999999998888777
Q ss_pred HHhhccc-ccccc-------------cCccc--ccccCCCCCCcccccCCCcccccccCChHhHHHHHHHHHH-hcChhH
Q 004770 294 LLHRFPV-SFSQT-------------AGQVG--HRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDK 356 (731)
Q Consensus 294 ~~~~~~~-~~~~~-------------~~~~~--~~~~~~~~~~~~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~ 356 (731)
+.+.... ..... ..... .....++.........|+++|+|+.|++++|++|++.+.+ +++|+.
T Consensus 423 ~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~ 502 (806)
T 3cf2_A 423 IRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDK 502 (806)
T ss_dssp HHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGG
T ss_pred HHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHH
Confidence 6543211 00000 00000 0011122222334556889999999999999999999998 899999
Q ss_pred HhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchh
Q 004770 357 YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (731)
Q Consensus 357 ~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (731)
|.+.|.++|+|+|||||||||||++|+|+|++++.+|+.+++++++++|+|++++.++++|+.|+..+||||||||||++
T Consensus 503 f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp GSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred HHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHH
Q 004770 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (731)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l 516 (731)
+..|+... ...+...++++++||.+||++....+|+||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.|+
T Consensus 583 ~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 583 AKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp C---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred hhccCCCC-CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 98885421 12345667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 517 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 517 ~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
++ .++..++|++.||+.|+||||+||+++|++|++.|.++
T Consensus 662 ~~--~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 662 RK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp SC--C--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred cC--CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 65 46778999999999999999999999999999999876
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.6e-42 Score=403.50 Aligned_cols=247 Identities=43% Similarity=0.680 Sum_probs=228.6
Q ss_pred cCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..+.++|+||+|++++|++|++++.+ +++|+.|..+|.++|+|||||||||||||+|||++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
+|+|+++..++.+|+.|+..+||||||||||+|+++++.. .++...+++++||.+||++..+.+|+||+|||+++.
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999887643 344557899999999999998899999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC----
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN---- 559 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~---- 559 (731)
||++|+||||||+.|+++.|+.++|.+||+.|+++ .++..++++..||..|.||+++||.++|++|++.|.++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~--~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS--SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC--CCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999965 466789999999999999999999999999999997753
Q ss_pred -------------CccccHHHHHHHHHHHhc
Q 004770 560 -------------KVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 560 -------------~~~It~~d~~~Alervi~ 577 (731)
...|+++||..|+..+..
T Consensus 431 ~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp GGTCCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred cccccccchhhhccceeeHHHHHHHHHhCCC
Confidence 234778899999877654
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2.2e-38 Score=326.49 Aligned_cols=253 Identities=62% Similarity=0.955 Sum_probs=228.0
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+..+..+|+||+|++++|++|.+++.++.++..|..++...|+++||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
.+.+.+...++.+|+.+....||++||||+|.+...++... .....+..+.+++++..++++..+.+++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc-CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 99999999999999999999999999999999988765432 23445667889999999999888889999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~I 563 (731)
+|++++|+|||++.+.+++|+.++|.+|++.++++ .++.+++++..++..++||+++||.++|++|+..|.+++...|
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~--~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i 240 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 240 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc--CCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999865 4567788899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccc
Q 004770 564 EKIDFIHAVERSIAGI 579 (731)
Q Consensus 564 t~~d~~~Alervi~g~ 579 (731)
+.+||.+|++++..|+
T Consensus 241 ~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 241 SMVEFEKAKDKIMMGL 256 (257)
T ss_dssp CHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhcCC
Confidence 9999999999988764
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=7e-39 Score=336.59 Aligned_cols=250 Identities=41% Similarity=0.672 Sum_probs=210.1
Q ss_pred cCCCcccccccCChHhHHHHHHHH-HHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 325 QGDTITFADVAGVDEAKEELEEIV-EFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV-~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..|.++|+||+|++++|++|++.+ ..+.+++.|..++...|+|++|+||||||||+|++++|++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 347899999999999999999855 4599999999999999999999999999999999999999999999999999988
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
.+.+.....++.+|..++...|||+|+||+|.+...+... ......+.+++++.+|++...+..++++++||+|+.
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~ 158 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 158 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhh
Confidence 8888888999999999988999999999999987654321 112234578999999999988888999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC-CCCCcccCCHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhhC-
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-ELPLAKDIDLGDIASMT--TGFTGADLANLVNEAALLAGRLN- 559 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~-~l~l~~dvdl~~LA~~t--~G~SgadL~~Lv~eAa~~A~r~~- 559 (731)
||++++||||||+.|++++|+.++|.+||+.++++. ..++..+++++.+|..+ .||||+||.++|++|+..|.++.
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998652 34567789999999875 59999999999999999998752
Q ss_pred ----------CccccHHHHHHHHHHHhcc
Q 004770 560 ----------KVVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 560 ----------~~~It~~d~~~Alervi~g 578 (731)
...|+++||++|++++...
T Consensus 239 ~~~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 239 ARQKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp -----------CCBCHHHHHHHHTTCCCC
T ss_pred hhccccccccCCeecHHHHHHHHHHhcCC
Confidence 3469999999999876543
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=4.9e-39 Score=329.76 Aligned_cols=261 Identities=50% Similarity=0.781 Sum_probs=207.5
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
|+++|+||+|++++|+.|++++.+++.++.|...|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCc
Q 004770 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (731)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDp 486 (731)
+.+...++.+|..+....|+||||||+|.+...+........+.+....+++++.++++.....+++||++||.++.||+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88889999999999999999999999999987664322222244556788999999998877789999999999999999
Q ss_pred cccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHH
Q 004770 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (731)
Q Consensus 487 ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~ 566 (731)
+++|+|||++.+++++|+.++|.+|++.++...++....++.+..++..+.|+++++|.+++++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999987665544444467899999999999999999999999999888999999
Q ss_pred HHHHHHHHHhcccchhhhhcc
Q 004770 567 DFIHAVERSIAGIEKKTAKLK 587 (731)
Q Consensus 567 d~~~Alervi~g~~~~~~~l~ 587 (731)
||.+|++++..+..++...++
T Consensus 241 d~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp CHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhccChhhhhHhhc
Confidence 999999999887766654443
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.4e-38 Score=331.07 Aligned_cols=251 Identities=40% Similarity=0.740 Sum_probs=222.2
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+.|.++|+||+|++++|+.|++.+.. +++|+.|..++..+++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 456789999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
+.+.|.....++.+|..|....||||||||+|.+...++.... .......+++++||..|+++....+++||+|||+++
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC-CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC-CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 9999999999999999999999999999999999877643211 111223467889999999988888999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCC--
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK-- 560 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~-- 560 (731)
.||++++|+|||++.+++++|+.++|.+|++.++++. ++..+++++.++..+.||+|+||.++|++|+..|.++..
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~--~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC--CCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999765 455788999999999999999999999999998875421
Q ss_pred -----------------------ccccHHHHHHHHHHHhc
Q 004770 561 -----------------------VVVEKIDFIHAVERSIA 577 (731)
Q Consensus 561 -----------------------~~It~~d~~~Alervi~ 577 (731)
..|+++||.+|+.++-.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 283 (301)
T 3cf0_A 244 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 283 (301)
T ss_dssp HC--------------------CCCBCHHHHHHHHTTCCC
T ss_pred hhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCC
Confidence 35788889888875543
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-36 Score=315.62 Aligned_cols=251 Identities=47% Similarity=0.776 Sum_probs=230.7
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
...+.++|+|++|+++++++|.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 356789999999999999999998877 8899999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
..+.|.....++.+|..+....|+||||||+|.+..++.... .....+....+..++..++++....+++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL-TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSC-CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcccc-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 999999999999999999999999999999999987765432 2335566788999999999888888999999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.||++++|++||++.+.++.|+.++|.+|++.++... .+..++++..++..+.|+++++|.+++++|...|.+++...
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~ 245 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM--NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999998764 45577889999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 004770 563 VEKIDFIHAVERSIA 577 (731)
Q Consensus 563 It~~d~~~Alervi~ 577 (731)
|+.+|+.+|++++..
T Consensus 246 I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 246 VTMDDFRKAVEKIME 260 (285)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998864
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=323.82 Aligned_cols=227 Identities=37% Similarity=0.635 Sum_probs=203.1
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEeechhh
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEF 401 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-gvpfi~is~se~ 401 (731)
.+.|.++|+||+|++++|+.|++.+.. +++|+.|.. +..+|+++||+||||||||+||+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 345789999999999999999998877 788877663 45778999999999999999999999999 899999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-CCCcEEEEEEcCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNR 480 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN~ 480 (731)
...|.|..+..++.+|..++..+||||||||||.+...++.. ......+.+++++.+|+++. ...+++||+|||+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 999999999999999999999999999999999998877542 34456788999999999886 3578999999999
Q ss_pred CCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
|+.||++++| ||++.+++++|+.++|.+||+.++......+ .+.+++.|++.+.||+++||.++|++|++.|.++
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999997654433 4568999999999999999999999999988765
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=2.1e-35 Score=303.66 Aligned_cols=247 Identities=59% Similarity=0.930 Sum_probs=220.4
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
....|.++|+|++|++++++++++++..+..+..+...+...|+|++|+||||||||+|++++|++++.+++.+++.++.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 482 (731)
..+.+.....++.+|+.+....|+++||||+|.++..+... .....++..+.+++++.+|++......++++++||.|+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc-ccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888889999999988889999999999998765421 11234566788999999999988878899999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCcc
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~ 562 (731)
.||++++|++||++.+.++.|+.++|.+||+.+++. .++.+++++..++..++|++++||.++|++|+..|.+++...
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~ 243 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 243 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998854 467788899999999999999999999999999999888889
Q ss_pred ccHHHHHHHH
Q 004770 563 VEKIDFIHAV 572 (731)
Q Consensus 563 It~~d~~~Al 572 (731)
|+.+|+++|+
T Consensus 244 I~~~dl~~a~ 253 (254)
T 1ixz_A 244 ITMKDLEEAA 253 (254)
T ss_dssp BCHHHHHHHT
T ss_pred cCHHHHHHHh
Confidence 9999999885
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=4.5e-36 Score=320.80 Aligned_cols=229 Identities=37% Similarity=0.617 Sum_probs=200.4
Q ss_pred ccccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 322 ~~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
+....|+++|+||+|++++|+.|++.+.+ ++.|+.|.. +..+++++||+||||||||+||+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34567889999999999999999998877 667766654 6678899999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-CCCcEEEEEEcC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATN 479 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN 479 (731)
+...|+|.....++.+|..++...||||||||||.+...+... ......++.++++..|+++. ...+++||+|||
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 9999999999999999999999999999999999998776432 22334677899999999874 457899999999
Q ss_pred CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
+++.||++++| ||+..+++++|+.++|.+||+.++.+....+ .+.+++.|+..+.||+++||.++|++|+..|.++
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999998754433 4557999999999999999999999999988875
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=6e-35 Score=317.10 Aligned_cols=248 Identities=35% Similarity=0.587 Sum_probs=208.7
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
...+.++|+||+|++++|+.|++.+.. ++.|+.|.. +..+++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 345788999999999999999998876 678877765 678889999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcCCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRS 481 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN~p 481 (731)
..|.|.....++.+|..++...||||||||||.+...+... ......+++++||..|+++.. ..+++||++||++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 99999999999999999999999999999999998776432 334557788999999998754 5689999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC--
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-- 559 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~-- 559 (731)
+.||++++| ||++.+++++|+.++|.+||+.++......+ .+.+++.|++.+.||+++||.++|++|++.|.++.
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998754333 45679999999999999999999999999998752
Q ss_pred -----------------------------------------CccccHHHHHHHHHHHhccc
Q 004770 560 -----------------------------------------KVVVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 560 -----------------------------------------~~~It~~d~~~Alervi~g~ 579 (731)
...|+++||..|+.++...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 275 ATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp CSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred hhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 12489999999998865543
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=2.6e-37 Score=319.63 Aligned_cols=252 Identities=63% Similarity=0.965 Sum_probs=218.5
Q ss_pred cCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
..+.++|+|++|.+++++.|++++.++..++.|..++...|+++||+||||||||++|+++|++++.|++.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcCCCCC
Q 004770 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDV 483 (731)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN~pd~ 483 (731)
+.|.+...++.+|+.+....|+||||||+|.+...+........+.+..+.+++|+..+++... ..+++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 8888888889999999999999999999999987653221111222334567888999987754 345999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~I 563 (731)
||++++|+|||+..+.++.|+.++|.+||+.+++. .++..+++++.++..+.|++++||.++|++|+..|.+++...|
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i 241 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG--VKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEV 241 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS--SCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSC
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc--CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999865 3556778899999999999999999999999999988888899
Q ss_pred cHHHHHHHHHHHhcc
Q 004770 564 EKIDFIHAVERSIAG 578 (731)
Q Consensus 564 t~~d~~~Alervi~g 578 (731)
+.+|+.+|+.++...
T Consensus 242 ~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 242 RQQHLKEAVERGIAG 256 (268)
T ss_dssp CHHHHHTSCTTCCCC
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999988765544
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=7.3e-34 Score=296.93 Aligned_cols=246 Identities=59% Similarity=0.937 Sum_probs=220.1
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
...+.++|+|++|.+++++++++++..+..+..+...+...|+|++|+||||||||+|++++++.++.+++.+++.++.+
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
.+.+.....+..+|+.+....|+++||||+|.++..+... .....++..+.+++++.+|++......++++++||.|+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc-cCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 8888888889999999988889999999999998665421 112345667889999999999887778999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccc
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~I 563 (731)
||++++|++||++.++++.|+.++|.+||+.+++. .++.+++++..++..++|++++||+++|++|+..|.+++...|
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I 268 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 268 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSB
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999998864 4667888999999999999999999999999999998888899
Q ss_pred cHHHHHHHH
Q 004770 564 EKIDFIHAV 572 (731)
Q Consensus 564 t~~d~~~Al 572 (731)
+.+|+++|+
T Consensus 269 ~~~dl~~a~ 277 (278)
T 1iy2_A 269 TMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999999885
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=4.4e-34 Score=323.05 Aligned_cols=245 Identities=43% Similarity=0.677 Sum_probs=223.6
Q ss_pred CCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
.+.++|++|+|+++++++|++.+.. +++|+.|..+|..+|+++||+||||||||++|+++|++++.+|+.++|+++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 3568999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
+.|.....++.+|..|....||||||||||.+...++.. ..+...+++++||..|++.....+++||+|||+++.|
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~----~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC----CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc----cchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 999999999999999999999999999999999876532 3455678899999999998888899999999999999
Q ss_pred CccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCc---
Q 004770 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV--- 561 (731)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~--- 561 (731)
|++++|+|||++.++++.|+.++|.+||+.+++. .++..++++..++..+.||+++||.++|++|+..|.++...
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~--~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~ 431 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc--CCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999865 45667889999999999999999999999999999887533
Q ss_pred --------------cccHHHHHHHHHHHh
Q 004770 562 --------------VVEKIDFIHAVERSI 576 (731)
Q Consensus 562 --------------~It~~d~~~Alervi 576 (731)
.|+++||.+|+.++.
T Consensus 432 ~~~~~~~~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 432 LEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp TTCSSCCHHHHHHCCBCHHHHHHHHTSHH
T ss_pred ccccccchhhcccCcCCHHHHHHHHHhCC
Confidence 478889998886554
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.1e-33 Score=316.14 Aligned_cols=228 Identities=37% Similarity=0.628 Sum_probs=192.5
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEeechh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASE 400 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-gvpfi~is~se 400 (731)
....+.++|+||+|++++|+.|.+.+.. ++.|+.|.. +..+++++||+||||||||+||+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998865 677766653 35678999999999999999999999999 89999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-CCcEEEEEEcC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 479 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN 479 (731)
+...|+|.....++.+|..++...||||||||||.+...+... ......+++++||..|+++.. ..+++||+|||
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 9999999999999999999999999999999999998776542 234456788999999998763 57899999999
Q ss_pred CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 004770 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~ 558 (731)
+++.||++++| ||++.+.+++|+.++|.+||+.++......+ .+.+++.|+..+.||+++||.++|++|+..|.++
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999997654333 4568999999999999999999999999988765
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-32 Score=293.18 Aligned_cols=245 Identities=35% Similarity=0.574 Sum_probs=210.0
Q ss_pred CCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
.+.++|+|++|++++++.|++.+.. +..++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 4678999999999999999999876 77777665554 678999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC--CCcEEEEEEcCCCC
Q 004770 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNRSD 482 (731)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--~~~VIVIaATN~pd 482 (731)
+.|.....++.+|..+....|+||||||||.+...+.. ..+....+.++++|..+++... ..+++||+|||.++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999876643 2334556788999999997653 46799999999999
Q ss_pred CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC---
Q 004770 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (731)
Q Consensus 483 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~--- 559 (731)
.||++++| ||+..++++.|+.++|.+|++.++...+..+.+ .+++.+++.+.||+++||.++|++|+..+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~-~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSE-EEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCH-HHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999999999999876555443 468899999999999999999999998888742
Q ss_pred ---------CccccHHHHHHHHHHHhcc
Q 004770 560 ---------KVVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 560 ---------~~~It~~d~~~Alervi~g 578 (731)
...|+.+||..|+.++...
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 310 DIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp ---------CCCBCHHHHHHHHHHHGGG
T ss_pred hhccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999887643
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-32 Score=287.00 Aligned_cols=245 Identities=39% Similarity=0.601 Sum_probs=206.8
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
...++++|+|++|++++++.|.+.+.. +.+|+.|...+ .+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345788999999999999999998876 66777666554 5688999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCC---CcEEEEEEcC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN---SAVIVLGATN 479 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~---~~VIVIaATN 479 (731)
..+.+.+...++.+|..+....|+||||||+|.+...++... .+......+.++..+++.... .+++||++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE----HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc----chHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 999999999999999999999999999999999987764321 222345678888888877543 5799999999
Q ss_pred CCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC
Q 004770 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (731)
Q Consensus 480 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~ 559 (731)
.++.||++++| ||+..+++++|+.++|.+|++.++...+..+.+ .+++.+++.+.|+++++|.+++++|+..|.++.
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDT-EALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCH-HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999876544443 368889999999999999999999999998764
Q ss_pred ------------CccccHHHHHHHHHHHh
Q 004770 560 ------------KVVVEKIDFIHAVERSI 576 (731)
Q Consensus 560 ------------~~~It~~d~~~Alervi 576 (731)
...|+.+||..|+.++.
T Consensus 245 ~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 245 NVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp C--------CCCCCCCCHHHHHHHTTSCC
T ss_pred hhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 25699999999986543
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=3.4e-31 Score=290.13 Aligned_cols=246 Identities=39% Similarity=0.615 Sum_probs=201.6
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
...+.++|+||+|++++++.|.+++.. +..++.|...+ .+++++||+||||||||+||+++|.+++.+|+.++++++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 445778999999999999999998876 55666665555 5678999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC--CCcEEEEEEcCC
Q 004770 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNR 480 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--~~~VIVIaATN~ 480 (731)
..|.|.....++.+|..+....|+||||||||.+...+... ......+.++.|+..|+++.. ..+|+||+|||+
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG----EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc----cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999999999999999999999999999999997765432 233456778889999987764 467999999999
Q ss_pred CCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh--
Q 004770 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL-- 558 (731)
Q Consensus 481 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~-- 558 (731)
++.||++++| ||+..++++.|+.++|.+||+.++...+..+.++ ++..|+..+.|+++++|..+++.|+..+.++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~-~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHH-HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999999999999998766655544 6889999999999999999999999998876
Q ss_pred ----------CCccccHHHHHHHHHHHhc
Q 004770 559 ----------NKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 559 ----------~~~~It~~d~~~Alervi~ 577 (731)
....|+.+||..++.+...
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 3457899999999976543
No 27
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.97 E-value=3.9e-33 Score=286.70 Aligned_cols=128 Identities=39% Similarity=0.653 Sum_probs=97.9
Q ss_pred hcccchhhhhcccchhhhhhhhhccceeeehhHhhhCCCCCceeeeEeeccCcceeeeEEecCCCccccccHHHHHHHHH
Q 004770 576 IAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLV 655 (731)
Q Consensus 576 i~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~~l~~ll~~~~~v~kvti~pr~g~alG~~~~~~~~~~~~~~~~~l~~~i~ 655 (731)
++|+++++..+++++|+++||||||||||+ +++|+.++|+||||+|| |+++|||++.|.+|++++|+++|+++|+
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva----~~l~~~~pV~KVTIiPR-G~alG~t~~~P~ed~~~~tk~~l~~~i~ 75 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMG----LVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKHIYDKKDLYNKIL 75 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHH----HHCSSCCCCCCEECC-----------------CCCCBHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHH----HHcCCCCceeEEEEeec-CCcceEEEeCCcccccccCHHHHHHHHH
Confidence 367888989999999999999999999996 47899999999999999 5799999999998999999999999999
Q ss_pred HHhhhHHHHHHhcC-CCcccChhhHHHHHHHHHHHHHHHhCCCCCCCceeeccc
Q 004770 656 TLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATL 708 (731)
Q Consensus 656 ~~LgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~~g~~~~~~~ 708 (731)
++|||||||+++|| |++||||+|||++||+||+.||++||||+++|+++|...
T Consensus 76 v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~ 129 (238)
T 2di4_A 76 VLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRV 129 (238)
T ss_dssp HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-
T ss_pred HHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCC
Confidence 99999999999995 589999999999999999999999999999999998753
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=3.7e-34 Score=341.17 Aligned_cols=234 Identities=42% Similarity=0.785 Sum_probs=205.9
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
....+.++|+|++|++++|+.|.+++.+ ++++..|..++..++.++||+||||||||+||+++|++++.+|+.++++++
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 3456789999999999999999999887 778888888999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
...|+|..+..++.+|+.|+...||||||||||.+...+++.. ........+++++||.+||++....+++||+|||++
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~ 626 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCC-SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSC
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCC-CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCc
Confidence 9999999999999999999999999999999999988775421 122345678999999999999888899999999999
Q ss_pred CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC
Q 004770 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (731)
Q Consensus 482 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~ 559 (731)
+.||++++|||||++.|++++|+.++|.+||+.++++. ++..+++++.+++.+.|||++||.++|++|+..|.++.
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~--~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC--CCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999764 56788899999999999999999999999999998765
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.97 E-value=4.3e-31 Score=279.47 Aligned_cols=228 Identities=18% Similarity=0.196 Sum_probs=160.4
Q ss_pred hCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHH----HhcCCeEEEEcccch
Q 004770 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDA 435 (731)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDa 435 (731)
.+.+.|+++||+||||||||+||+++|++++.+|+.++++++.+.|+|..+..++++|..| +...||||||||||+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred hhcccCCcccccchHHHHHHHHHHHHhhcCCC-----------CCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCC
Q 004770 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (731)
Q Consensus 436 L~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd 504 (731)
+...+++.. ........+.+.|+..||+.. ...+++||+|||+++.||++++||||||+.+. .|+
T Consensus 111 ~~~~~~~~~--~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~ 186 (293)
T 3t15_A 111 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 186 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCC
T ss_pred hcCCCCCCc--cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcC
Confidence 987544211 111123355677777776332 45679999999999999999999999998887 579
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH--------HHHh
Q 004770 505 KIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV--------ERSI 576 (731)
Q Consensus 505 ~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al--------ervi 576 (731)
.++|.+|++.++.. .+++++.++..+.+|++++|..+-.- .+. +..+.+.+.+ .+.+
T Consensus 187 ~~~r~~Il~~~~~~------~~~~~~~l~~~~~~~~~~~l~~~~~l---~~~------~~~~~i~~~~~~~g~~~~~~~~ 251 (293)
T 3t15_A 187 REDRIGVCTGIFRT------DNVPAEDVVKIVDNFPGQSIDFFGAL---RAR------VYDDEVRKWVSGTGIEKIGDKL 251 (293)
T ss_dssp HHHHHHHHHHHHGG------GCCCHHHHHHHHHHSCSCCHHHHHHH---HHH------HHHHHHHHHHHHTCSTTCHHHH
T ss_pred HHHHHHHHHHhccC------CCCCHHHHHHHhCCCCcccHHHHHHH---HHH------HHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999988864 35678999999999999988643110 000 0001111111 1111
Q ss_pred cccchhhhhcccchhhhhhhhhccceeeeh
Q 004770 577 AGIEKKTAKLKGSEKAVVARHEAGHAVVGT 606 (731)
Q Consensus 577 ~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~ 606 (731)
.........+.+.+..+.++||+||++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 252 LNSFDGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp TSCSSCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCCccccHHHHHHHHHHHHHH
Confidence 111112233445567888999999999864
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=6.5e-28 Score=287.51 Aligned_cols=245 Identities=44% Similarity=0.682 Sum_probs=219.3
Q ss_pred cCCCcccccccCChHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..+.++|+||+|+++++++|.+.+.. +++|+.|..++..++.++||+||||||||+||+++|++++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC
Q 004770 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 483 (731)
.+.+.....++.+|..+....|+++||||+|.+...++. ...+...+++++|+..|++...+..+++|++||+++.
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 999999999999999999999999999999999877643 2344557788999999999988889999999999999
Q ss_pred CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCc--
Q 004770 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV-- 561 (731)
Q Consensus 484 LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~-- 561 (731)
||+++.+++||++.+.++.|+.++|.+|++.++.+ +.+..++++..++..+.||+++++..++++|+..+.++...
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i 430 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT--SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhc--CCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999865 45667888999999999999999999999999888765432
Q ss_pred ---------------cccHHHHHHHHHHH
Q 004770 562 ---------------VVEKIDFIHAVERS 575 (731)
Q Consensus 562 ---------------~It~~d~~~Alerv 575 (731)
.++.+|+..++...
T Consensus 431 ~~~~~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp SCHHHHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred chhhhccchhhhhhhhhhhhhhhcccccc
Confidence 34556777776554
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=2.4e-25 Score=249.13 Aligned_cols=171 Identities=21% Similarity=0.251 Sum_probs=131.9
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHH
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se~~~ 403 (731)
.+...|++++|++++++.+.+++..++. +..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3567799999999999999999876543 556789999999999999999999999999 9999999999999
Q ss_pred HhhccchHHHHHHHHHH---HhcCCeEEEEcccchhhcccCCcccccchHHHH---------------HHHHHHHHhhc-
Q 004770 404 LYVGMGASRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE---------------QTLNQLLTEMD- 464 (731)
Q Consensus 404 ~~vG~~~~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~---------------~~Ln~LL~emd- 464 (731)
.++|..+. ++++|..| +...||||||||+|+++..+............. +..++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 99999999 788899999999999998875431111110001 11233555554
Q ss_pred -CCCCCCcEEEEEEcCCCCCCCccccCCCccce--EEEeeCCC
Q 004770 465 -GFDSNSAVIVLGATNRSDVLDPALRRPGRFDR--VVMVETPD 504 (731)
Q Consensus 465 -g~~~~~~VIVIaATN~pd~LDpALlRpGRFdr--~I~v~~Pd 504 (731)
+......++|++|||+++.+|+++.||||||+ .+.++.|+
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~ 225 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPK 225 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCC
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCc
Confidence 33444456667999999999999999999998 55666664
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.90 E-value=7.4e-23 Score=220.22 Aligned_cols=250 Identities=20% Similarity=0.268 Sum_probs=174.2
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVEL 404 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se~~~~ 404 (731)
|..+|++++|.+++++.+..++..+.. +..+++++||+||||||||++|+++|++++ .|++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 556699999999999998888876654 344568999999999999999999999987 48998887663321
Q ss_pred h-------------------------------------------------hccchHHHHHHHHHHHh---------cCCe
Q 004770 405 Y-------------------------------------------------VGMGASRVRDLFARAKK---------EAPS 426 (731)
Q Consensus 405 ~-------------------------------------------------vG~~~~~vr~lF~~A~~---------~aP~ 426 (731)
+ .|.....+++.|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 12224456666655543 1278
Q ss_pred EEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc-----------CCCCCCCccccCCCccc
Q 004770 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-----------NRSDVLDPALRRPGRFD 495 (731)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT-----------N~pd~LDpALlRpGRFd 495 (731)
||||||+|.+.. ..++.|+..++... ..++++++. |.+..++++|++ ||.
T Consensus 192 vl~IDEi~~l~~---------------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 192 VLFIDEVHMLDI---------------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp EEEEESGGGSBH---------------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred eEEEhhccccCh---------------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 999999998842 34566777666432 345555554 357889999999 887
Q ss_pred eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 004770 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (731)
Q Consensus 496 r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alerv 575 (731)
. +.+++|+.+++.+|++.++...+..++++ .++.+++.+.+.+++++.++++.|+..|..++...|+.+|+.+|++..
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~-~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSED-AYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5 89999999999999999998776666555 478889988845999999999999999999999999999999999764
Q ss_pred hcccchhhhhcccchhhhhhhhhccceeeeh
Q 004770 576 IAGIEKKTAKLKGSEKAVVARHEAGHAVVGT 606 (731)
Q Consensus 576 i~g~~~~~~~l~~~ek~~iA~hEaGHAlv~~ 606 (731)
+.. .+....+.+.+++. .++|.++---.+
T Consensus 331 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 359 (368)
T 3uk6_A 331 LDE-SRSTQYMKEYQDAF-LFNELKGETMDT 359 (368)
T ss_dssp BCH-HHHHHHHC-------------------
T ss_pred cCH-HHHHHHHHHhhhhh-hhhcCCcccccc
Confidence 422 22222334444443 467777665443
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.89 E-value=2.7e-23 Score=218.38 Aligned_cols=225 Identities=18% Similarity=0.283 Sum_probs=172.5
Q ss_pred cc-cccCChHhHHHHHHHHHHhcChhHHhhhCCC---CCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeech
Q 004770 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGAR---PPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (731)
Q Consensus 331 f~-DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~---~pkgVLL~GPPGTGKT~LAkAlA~el-------gvpfi~is~s 399 (731)
++ +|+|++++|+.|.+++..+..+..+...|.. ++.++||+||||||||++|+++|+++ ..+++.++++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 44 7999999999999999987667777666654 44579999999999999999999987 3499999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
++...+.|.....+..+|+.+ .++||||||+|.+...++. ++.....++.|+..|+.. ..+++||++||
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~------~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~ 177 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENN--RDDLVVILAGY 177 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHHC--TTTCEEEEEEC
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc------ccccHHHHHHHHHHHhcC--CCCEEEEEeCC
Confidence 999889998888899999887 4679999999999865432 112245677888888743 35678888988
Q ss_pred CCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHh-------CCCCCHHHHHHH
Q 004770 480 RSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANL 547 (731)
Q Consensus 480 ~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~-------t~G~SgadL~~L 547 (731)
.++ .++|+|++ ||+.++.|++|+.+++.+|++.++...+..+.++ .++.++.. ...-+.+++.++
T Consensus 178 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~gn~r~l~~~ 254 (309)
T 3syl_A 178 ADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE-AETALRAYIGLRRNQPHFANARSIRNA 254 (309)
T ss_dssp HHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 653 35799998 9999999999999999999999998766555444 24555554 223358999999
Q ss_pred HHHHHHHHHhh----CCccccHHHHH
Q 004770 548 VNEAALLAGRL----NKVVVEKIDFI 569 (731)
Q Consensus 548 v~eAa~~A~r~----~~~~It~~d~~ 569 (731)
++.|...+..+ ....++.+++.
T Consensus 255 l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 255 LDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 99998766543 23445555443
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=4.6e-21 Score=204.38 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=168.9
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
..+.+|+|++|.+++++.+.+.+...+. ....+.++||+||||||||++|+++|++++.+|+.+++..+.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 3455899999999999999988875432 234567899999999999999999999999999999987652
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC----------------CC
Q 004770 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SN 469 (731)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------------~~ 469 (731)
....+...+.. ...+++|||||||.+... ..+.|+..|+... ..
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~---------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRLSPA---------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGCCHH---------------HHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhcCHH---------------HHHHHHHHHHhccchhhcccCccccceecCC
Confidence 23334444432 346789999999988522 2344454444322 01
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHH
Q 004770 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (731)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~ 549 (731)
.++++|++||....++++|++ ||+..+.+++|+.+++.++++.++...+..+.++ .++.++..+.| +.+++.++++
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~ 228 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEK-AALEIAKRSRS-TPRIALRLLK 228 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHTTTT-CHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHCc-CHHHHHHHHH
Confidence 248999999999999999998 9999999999999999999999998765544433 46777886666 7899999999
Q ss_pred HHHHHHHhhCCccccHHHHHHHHHHH
Q 004770 550 EAALLAGRLNKVVVEKIDFIHAVERS 575 (731)
Q Consensus 550 eAa~~A~r~~~~~It~~d~~~Alerv 575 (731)
.+...|...+...|+.+++..++...
T Consensus 229 ~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 229 RVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99888888888899999999998763
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=3.3e-20 Score=195.83 Aligned_cols=219 Identities=21% Similarity=0.272 Sum_probs=164.3
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~v 406 (731)
.+.+|++++|.+++++.|.+.+..... ....+.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 345899999999999999888765432 1245678999999999999999999999999999999876521
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc-----CCC--------CCCcEE
Q 004770 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GFD--------SNSAVI 473 (731)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-----g~~--------~~~~VI 473 (731)
...+...|..+ ...+++|||||+|.+.... ...+..++.... +.. ...+++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~------------~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQA------------EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHHH------------HHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccch------------HHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 12222333221 2457899999999875221 122233333211 000 113578
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 004770 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (731)
Q Consensus 474 VIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~ 553 (731)
+|++||.++.++++|.+ ||+..+.+++|+.+++.++++.++...+..+.++ .++.++..+.| +++++.++++.+..
T Consensus 141 ~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred EEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 99999999999999988 9988999999999999999999998766655544 47778888876 68999999999988
Q ss_pred HHHhhCCccccHHHHHHHHHHH
Q 004770 554 LAGRLNKVVVEKIDFIHAVERS 575 (731)
Q Consensus 554 ~A~r~~~~~It~~d~~~Alerv 575 (731)
.|...+...|+.+++..++...
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 8877777889999998887654
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=8.4e-21 Score=198.30 Aligned_cols=237 Identities=24% Similarity=0.325 Sum_probs=163.6
Q ss_pred ccccCChHhHHHHHHHHHH-hcChhHHhh-hCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hhhcc
Q 004770 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIR-LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~-Lk~p~~~~~-lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~-~~vG~ 408 (731)
++|+|++++++.|...+.. +..+..... .....|.++||+||||||||++|+++|+.++.+++.++++++.+ .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999887754 111110000 11246788999999999999999999999999999999998875 45554
Q ss_pred c-hHHHHHHHHHH-----HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--------CCCcEEE
Q 004770 409 G-ASRVRDLFARA-----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIV 474 (731)
Q Consensus 409 ~-~~~vr~lF~~A-----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIV 474 (731)
. ...+++++..+ ....++||||||+|.+....... ..+.....+.+.|+..|++.. ...++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~---~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS---GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC---SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc---ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 3 34566666533 11236799999999998765321 223333445677887777531 2346788
Q ss_pred EEE----cCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHH-----------HhcCCC--CCcccCCHHHHHHhCC
Q 004770 475 LGA----TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH-----------VSKKEL--PLAKDIDLGDIASMTT 537 (731)
Q Consensus 475 IaA----TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~-----------l~~~~l--~l~~dvdl~~LA~~t~ 537 (731)
|++ ++.+..++++|++ ||+..+.+++|+.+++.+|++.. +...+. .++++ .++.|++.+.
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~ 248 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD-AVKKIAEAAF 248 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHH-HHHHHHHHHH
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHH-HHHHHHHHhh
Confidence 888 4677889999997 99989999999999999999831 111221 22222 3566666652
Q ss_pred -------CCCHHHHHHHHHHHHHHHHh-----hCC-ccccHHHHHHHHHH
Q 004770 538 -------GFTGADLANLVNEAALLAGR-----LNK-VVVEKIDFIHAVER 574 (731)
Q Consensus 538 -------G~SgadL~~Lv~eAa~~A~r-----~~~-~~It~~d~~~Aler 574 (731)
+.+.+++.++++.+...+.. .+. ..|+.+++.+++..
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 45789999999987654332 122 24899998888754
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=2.1e-21 Score=222.18 Aligned_cols=226 Identities=22% Similarity=0.304 Sum_probs=153.1
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH----
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---- 403 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~---- 403 (731)
..-.+|++|++++++.+.+.+..-... ... .+..+||+||||||||+||+++|+.++.+++.+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 445688999999999998766532110 011 5668999999999999999999999999999999877544
Q ss_pred -----HhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCC---------
Q 004770 404 -----LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN--------- 469 (731)
Q Consensus 404 -----~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~--------- 469 (731)
.|+|.....+...|..+....| |+||||||.+...+++ ...+.||..||.....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-----------~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-----------DPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-----------CHHHHHHHHHhhhhcceeecccCCe
Confidence 5777777888888988877777 9999999999765431 1345677777643211
Q ss_pred ----CcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc-----CCC-----CCcccCCHHHHHH-
Q 004770 470 ----SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIAS- 534 (731)
Q Consensus 470 ----~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~-----~~l-----~l~~dvdl~~LA~- 534 (731)
.+++||+|||.++.||++|++ ||+ .|.++.|+.+++.+|++.++.. .++ .+.++ .+..++.
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~-~l~~l~~~ 294 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQ-AILDIIRY 294 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHH-HHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHH-HHHHHHHh
Confidence 568999999999999999999 995 7999999999999999998732 222 11222 2444444
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH----hh--CCccccHHHHHHHHHHH
Q 004770 535 MTTGFTGADLANLVNEAALLAG----RL--NKVVVEKIDFIHAVERS 575 (731)
Q Consensus 535 ~t~G~SgadL~~Lv~eAa~~A~----r~--~~~~It~~d~~~Alerv 575 (731)
.+.....++|++.++.++..|. +. ....|+.+++.+++...
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 3333445666666555544443 32 34579999999888543
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=8.7e-20 Score=189.32 Aligned_cols=221 Identities=20% Similarity=0.268 Sum_probs=149.9
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhcc--
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGM-- 408 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~-- 408 (731)
...++|.++..+.+.+....+. ..+...+...+.++||+||||||||++|+++|++++.+|+.+++++. +.|.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCch
Confidence 4568888887666665322221 11223345678899999999999999999999999999999988752 2332
Q ss_pred --chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-CCCcEEEEEEcCCCCCCC
Q 004770 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLD 485 (731)
Q Consensus 409 --~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN~pd~LD 485 (731)
....++.+|+.+....++||||||||.+...+... .......++.|+..+++.. ....++||+|||.++.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 23567889999888889999999999997554321 1122455666666777654 345788999999999888
Q ss_pred c-cccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCC----CHHHHHHHHHHHHHHHHhhCC
Q 004770 486 P-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF----TGADLANLVNEAALLAGRLNK 560 (731)
Q Consensus 486 p-ALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~----SgadL~~Lv~eAa~~A~r~~~ 560 (731)
+ .+.+ ||+..+.+++++ +|.+|.+....... +. +.++..+++.+.|+ +.+++.++++.|...+
T Consensus 182 ~~~l~~--rf~~~i~~p~l~--~r~~i~~i~~~~~~--~~-~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~----- 249 (272)
T 1d2n_A 182 EMEMLN--AFSTTIHVPNIA--TGEQLLEALELLGN--FK-DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD----- 249 (272)
T ss_dssp HTTCTT--TSSEEEECCCEE--EHHHHHHHHHHHTC--SC-HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----
T ss_pred hhhhhc--ccceEEcCCCcc--HHHHHHHHHHhcCC--CC-HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----
Confidence 8 4554 999888775554 44445544443322 22 33578889998887 5777777777664332
Q ss_pred ccccHHHHHHHHH
Q 004770 561 VVVEKIDFIHAVE 573 (731)
Q Consensus 561 ~~It~~d~~~Ale 573 (731)
.....+++..+++
T Consensus 250 ~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 250 PEYRVRKFLALLR 262 (272)
T ss_dssp GGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 2334455555554
No 39
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=1.2e-20 Score=210.30 Aligned_cols=169 Identities=24% Similarity=0.296 Sum_probs=81.2
Q ss_pred ccccCChHhHHHHHHHHHH-hcChhHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hhhcc
Q 004770 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~-Lk~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~-~~vG~ 408 (731)
++|+|++++|+.|...+.. ++.+..+..+.. .+|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887754 333333333332 35789999999999999999999999999999999999988 59995
Q ss_pred -chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE-cCCCCCCCc
Q 004770 409 -GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA-TNRSDVLDP 486 (731)
Q Consensus 409 -~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA-TN~pd~LDp 486 (731)
.+..++.+|..|... +++||+|.+.... .....++++++||.+||++.....+ +++ ||+++.||+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 788999999998876 4589998875332 2234478999999999999776554 455 999999999
Q ss_pred cccCCCccceEEEeeCCCHH-HHHHHHH
Q 004770 487 ALRRPGRFDRVVMVETPDKI-GREAILK 513 (731)
Q Consensus 487 ALlRpGRFdr~I~v~~Pd~~-eR~eILk 513 (731)
+|+||||||+.|+|+.|+.. .|.+|+.
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999987 6777763
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.80 E-value=9.7e-19 Score=187.45 Aligned_cols=227 Identities=20% Similarity=0.212 Sum_probs=165.5
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeec
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSA 398 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~ 398 (731)
...+++++|.++..+.|.+.+.... ....+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3456899999998888777654321 13456789999999999999999999988 889999998
Q ss_pred hhhHH------Hh----------hccchHH-HHHHHHHHHh-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHH
Q 004770 399 SEFVE------LY----------VGMGASR-VRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (731)
Q Consensus 399 se~~~------~~----------vG~~~~~-vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (731)
....+ .. .+..... +..++..... ..|+||||||+|.+...+ .....+..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~ 156 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRIT 156 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHh
Confidence 75321 10 1111223 3344444433 348899999999986432 0235677778
Q ss_pred HhhcCCCCCCcEEEEEEcCCC---CCCCccccCCCccce-EEEeeCCCHHHHHHHHHHHHhc--CCCCCcccCCHHHHHH
Q 004770 461 TEMDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDIAS 534 (731)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~p---d~LDpALlRpGRFdr-~I~v~~Pd~~eR~eILk~~l~~--~~l~l~~dvdl~~LA~ 534 (731)
..++......++.+|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++.++.. .+..+.++ .++.+++
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~ 233 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAA 233 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 777654324678999999987 778999988 8864 8999999999999999998864 22334333 3677777
Q ss_pred hCC---CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 535 MTT---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 535 ~t~---G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
.+. | .++.+.++++.|...|..++...|+.+|+.+|+.+..
T Consensus 234 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 234 LAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 776 6 6899999999999999888888999999999998764
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=3.2e-19 Score=193.10 Aligned_cols=221 Identities=24% Similarity=0.307 Sum_probs=150.0
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHh---hhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH-hhcc
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYI---RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGM 408 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~---~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~-~vG~ 408 (731)
.|+|++++++.|...+.......... .....++.++||+||||||||++|+++|+.++.||+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998775321111100 0112367889999999999999999999999999999999988753 7776
Q ss_pred c-hHHHHHHHHHH----HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC----------------
Q 004770 409 G-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------------- 467 (731)
Q Consensus 409 ~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------------- 467 (731)
. ...++.+|..+ ....++||||||||.+...+.... ...+...+.+.+.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~-~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS-ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc-cccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 5 56677787766 345678999999999987764321 1233334458889999988431
Q ss_pred ---CCCcEEEEEEcCCC----------CC-----------------------------------CCccccCCCccceEEE
Q 004770 468 ---SNSAVIVLGATNRS----------DV-----------------------------------LDPALRRPGRFDRVVM 499 (731)
Q Consensus 468 ---~~~~VIVIaATN~p----------d~-----------------------------------LDpALlRpGRFdr~I~ 499 (731)
...++++|+++|.. .. +.|+|+. ||+..+.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 12345566666542 11 6788887 9999999
Q ss_pred eeCCCHHHHHHHHHH----HHh-------cCCC--CCcccCCHHHHHH--hCCCCCHHHHHHHHHHHHHHHHh
Q 004770 500 VETPDKIGREAILKV----HVS-------KKEL--PLAKDIDLGDIAS--MTTGFTGADLANLVNEAALLAGR 557 (731)
Q Consensus 500 v~~Pd~~eR~eILk~----~l~-------~~~l--~l~~dvdl~~LA~--~t~G~SgadL~~Lv~eAa~~A~r 557 (731)
+.+|+.+++.+|++. ++. ..+. .+.++ .++.|+. ....+..++|+++++++...+..
T Consensus 253 ~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~-a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~ 324 (363)
T 3hws_A 253 LNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDE-ALDAIAKKAMARKTGARGLRSIVEAALLDTMY 324 (363)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHH-HHHHHHHhhcCCccCchHHHHHHHHHHHHHHH
Confidence 999999999999886 221 1111 11222 2445553 33445567888888777766544
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=5e-19 Score=197.49 Aligned_cols=223 Identities=17% Similarity=0.252 Sum_probs=156.8
Q ss_pred CCccccccc-CChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 004770 327 DTITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (731)
Q Consensus 327 ~~vtf~DV~-G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se 400 (731)
+..+|++++ |..... .+..+......+ .. +.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 100 ~~~tfd~fv~g~~n~~-a~~~~~~~a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF-AYHAALEVAKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp TTCSGGGCCCCTTTHH-HHHHHHHHHHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCChhhcCCCCchHH-HHHHHHHHHhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 567899988 644332 222222222222 12 6789999999999999999999988 89999999998
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
+...+...........|.......|+||||||+|.+.... .. ...+..++..+ ......+||++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~-q~~l~~~l~~l---~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GV-QTELFHTFNEL---HDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HH-HHHHHHHHHHH---HTTTCEEEEEESSC
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HH-HHHHHHHHHHH---HHCCCeEEEEECCC
Confidence 8765544332222233444433368899999999986421 11 11222222222 12334566655555
Q ss_pred CCC---CCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 481 pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
+.. ++++|++ ||. ..+.+++|+.++|.+|++..+...++.+++++ ++.|+..+.| +.+++.++++.+...|
T Consensus 238 ~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 554 8899998 775 78999999999999999999987666666654 7888988876 8999999999999888
Q ss_pred HhhCCccccHHHHHHHHHHHh
Q 004770 556 GRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 556 ~r~~~~~It~~d~~~Alervi 576 (731)
...++ .|+.+++.+++....
T Consensus 314 ~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSSS-CCCHHHHHHHTSTTT
T ss_pred HHhCC-CCCHHHHHHHHHHHh
Confidence 76554 699999999886654
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.79 E-value=4.1e-18 Score=167.11 Aligned_cols=203 Identities=24% Similarity=0.252 Sum_probs=149.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se 400 (731)
.++.+|++++|.+++++.|.+.+.. ..+.++||+||||||||++|+++++++ ..+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 4556799999999999988877642 123349999999999999999999875 46788888765
Q ss_pred hHHHhhccchHHHHHHHHHHH------hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 004770 401 FVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (731)
... ...+...+.... ...++||+|||+|.+... ..+.|+..++.. ..++.+
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~l~~~l~~~--~~~~~~ 135 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------------AQAALRRTMEMY--SKSCRF 135 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH---------------HHHHHHHHHHHT--TTTEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH---------------HHHHHHHHHHhc--CCCCeE
Confidence 322 122333333222 246889999999987422 123344444432 346788
Q ss_pred EEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 475 IaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...+..+.++ .++.+++.+.| +++.+.++++.++..
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 210 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAAI 210 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 8899999999999998 887 899999999999999999887655555443 46777887766 788888888877655
Q ss_pred HHhhCCccccHHHHHHHHH
Q 004770 555 AGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 555 A~r~~~~~It~~d~~~Ale 573 (731)
+ ..|+.+|+.+++.
T Consensus 211 ~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 211 G-----EVVDADTIYQITA 224 (226)
T ss_dssp C-----SCBCHHHHHHHHH
T ss_pred C-----ceecHHHHHHHhc
Confidence 4 5899999998874
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.79 E-value=6.6e-19 Score=197.05 Aligned_cols=208 Identities=25% Similarity=0.317 Sum_probs=154.9
Q ss_pred cCCCcccccccCChHhH---HHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 325 QGDTITFADVAGVDEAK---EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 325 ~~~~vtf~DV~G~devK---~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.-.+.+|++++|+++++ +.|...+..- ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~- 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT- 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-
Confidence 34456899999999998 5666555421 1257999999999999999999999999999998743
Q ss_pred HHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 004770 402 VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (731)
.+...++++|..+.. ..++||||||||.+....+ +.||..++. ..+++|++
T Consensus 86 ------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q---------------~~LL~~le~----~~v~lI~a 140 (447)
T 3pvs_A 86 ------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ---------------DAFLPHIED----GTITFIGA 140 (447)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHT----TSCEEEEE
T ss_pred ------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH---------------HHHHHHHhc----CceEEEec
Confidence 344567777777653 4688999999999864432 345555553 34667766
Q ss_pred c--CCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC-------CCCCcccCCHHHHHHhCCCCCHHHHHHHH
Q 004770 478 T--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-------ELPLAKDIDLGDIASMTTGFTGADLANLV 548 (731)
Q Consensus 478 T--N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~-------~l~l~~dvdl~~LA~~t~G~SgadL~~Lv 548 (731)
| |....++++|++ |+. .+.+++|+.+++.++++.++... ++.++++ .++.|+..+.| +.+++.+++
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~-al~~L~~~~~G-d~R~lln~L 215 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDE-TRRAIAELVNG-DARRALNTL 215 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHH-HHHHHHHHHCS-CHHHHHHHH
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHH-HHHHHHHHCCC-CHHHHHHHH
Confidence 6 444689999998 765 78899999999999999998762 2223333 36777888766 899999999
Q ss_pred HHHHHHHHhh--CCccccHHHHHHHHHHH
Q 004770 549 NEAALLAGRL--NKVVVEKIDFIHAVERS 575 (731)
Q Consensus 549 ~eAa~~A~r~--~~~~It~~d~~~Alerv 575 (731)
+.++..+... +...|+.+++.+++.+.
T Consensus 216 e~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 216 EMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 9998887533 55789999999988654
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.77 E-value=4.4e-18 Score=180.89 Aligned_cols=218 Identities=18% Similarity=0.235 Sum_probs=148.1
Q ss_pred CCccccccc-CCh--HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh
Q 004770 327 DTITFADVA-GVD--EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (731)
Q Consensus 327 ~~vtf~DV~-G~d--evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se 400 (731)
+..+|++++ |.. .+...+..++ ..+ ...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~---~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEAL---ENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHH---HTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHH---hCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 567899997 533 3333333333 222 2346789999999999999999999998 89999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
+...+.+.........|..... .++||||||+|.+...+. ..+.+..++..+. .....+|+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~----------~~~~l~~~l~~~~---~~~~~iii~~~~~ 141 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKER----------TQIEFFHIFNTLY---LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCHH----------HHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCChH----------HHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 8776654433322333433332 477999999999864211 1112222332221 1234677777777
Q ss_pred CC---CCCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH-
Q 004770 481 SD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL- 554 (731)
Q Consensus 481 pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~- 554 (731)
+. .++++|.+ ||+ ..+.+++ +.+++.+|++.++...++.+++++ ++.|+..+ | +.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~-l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEV-IDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHH-HHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 65 68999998 885 7889999 999999999999987777666654 78889988 5 789999999987765
Q ss_pred --HHh-hCCccc-cHHHHHHHHHH
Q 004770 555 --AGR-LNKVVV-EKIDFIHAVER 574 (731)
Q Consensus 555 --A~r-~~~~~I-t~~d~~~Aler 574 (731)
+.. .....| +.+++.+++..
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCHHHHHHHHHH
Confidence 100 122345 66666666553
No 46
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.77 E-value=9.5e-18 Score=180.65 Aligned_cols=216 Identities=21% Similarity=0.270 Sum_probs=158.2
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----------CCcEEEee
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----------EVPFISCS 397 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----------gvpfi~is 397 (731)
...++++|.++..++|.+.+..... ...+++++|+||||||||++|+++++++ +.+++.++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3458999999999999887754322 2456789999999999999999999987 89999999
Q ss_pred chhhH-H----------Hh-------hccchHH-HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHH-HH
Q 004770 398 ASEFV-E----------LY-------VGMGASR-VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-LN 457 (731)
Q Consensus 398 ~se~~-~----------~~-------vG~~~~~-vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~-Ln 457 (731)
|.+.. . .+ .+..... +..++..+... ++||||||+|.+..... ... +.
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~-----------~~~~l~ 156 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG-----------GDIVLY 156 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT-----------SHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC-----------CceeHH
Confidence 87643 1 11 1111222 34444444333 44999999999964421 123 44
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCC---CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc--CCCCCcccCCHHHH
Q 004770 458 QLLTEMDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDI 532 (731)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~p---d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~--~~l~l~~dvdl~~L 532 (731)
.|+... .++.+|++||.+ +.+++++.+ ||...+.+++|+.++..+|++.++.. ....+.++ .++.+
T Consensus 157 ~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i 227 (384)
T 2qby_B 157 QLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE-ILSYI 227 (384)
T ss_dssp HHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHH
T ss_pred HHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH-HHHHH
Confidence 554433 678999999987 678999987 88779999999999999999998863 12233333 36667
Q ss_pred HHhCC---CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 533 ASMTT---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 533 A~~t~---G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
++.+. | ..+.+.++++.|...|. +...|+.+|+.+|+++..
T Consensus 228 ~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 228 AAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 77776 5 67888899999988876 567899999999998764
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.77 E-value=4.1e-18 Score=181.45 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=142.9
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------c------
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------P------ 392 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-------p------ 392 (731)
.+..+|++++|.+++++.+.... + . ..+.++||+||||||||++|+++|+.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-C---------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 45678999999999877643221 1 1 12345999999999999999999998862 2
Q ss_pred --------------------EEEeechhhHHHhhccchHHHHHHHHHH---------HhcCCeEEEEcccchhhcccCCc
Q 004770 393 --------------------FISCSASEFVELYVGMGASRVRDLFARA---------KKEAPSIIFIDEIDAVAKSRDGR 443 (731)
Q Consensus 393 --------------------fi~is~se~~~~~vG~~~~~vr~lF~~A---------~~~aP~ILfIDEIDaL~~~r~~~ 443 (731)
++.+..........|.. .+...+..+ ....++||||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~---- 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH---- 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH----
Confidence 22222111111122210 011122221 1123679999999987532
Q ss_pred ccccchHHHHHHHHHHHHhhcC----CCC-------CCcEEEEEEcCCCC-CCCccccCCCccceEEEeeCC-CHHHHHH
Q 004770 444 FRIVSNDEREQTLNQLLTEMDG----FDS-------NSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETP-DKIGREA 510 (731)
Q Consensus 444 ~~~~~~~e~~~~Ln~LL~emdg----~~~-------~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~v~~P-d~~eR~e 510 (731)
..+.|+..|+. +.. ...+++|+|||..+ .++++|++ ||+.++.++.| +.+++.+
T Consensus 160 -----------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~ 226 (350)
T 1g8p_A 160 -----------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVE 226 (350)
T ss_dssp -----------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHH
T ss_pred -----------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHH
Confidence 22344443331 110 13689999999754 89999999 99988999999 6777778
Q ss_pred HHHHHHh-----------------------------cCCCCCcccCCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHhh
Q 004770 511 ILKVHVS-----------------------------KKELPLAKDIDLGDIASMTTG---FTGADLANLVNEAALLAGRL 558 (731)
Q Consensus 511 ILk~~l~-----------------------------~~~l~l~~dvdl~~LA~~t~G---~SgadL~~Lv~eAa~~A~r~ 558 (731)
|++.++. ...+.++++ .++.|+....+ -+.+.+.++++.|...|..+
T Consensus 227 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 227 VIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc
Confidence 8876321 111223333 24445444332 26799999999999999888
Q ss_pred CCccccHHHHHHHHHHHhcc
Q 004770 559 NKVVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 559 ~~~~It~~d~~~Alervi~g 578 (731)
++..|+.+|+.+|+..++..
T Consensus 306 ~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 306 GATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp TCSBCCHHHHHHHHHHHHGG
T ss_pred CCCcCCHHHHHHHHHHHHhh
Confidence 88899999999999877643
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.76 E-value=5.2e-18 Score=169.69 Aligned_cols=207 Identities=16% Similarity=0.123 Sum_probs=142.3
Q ss_pred CCcccccccCCh---HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh
Q 004770 327 DTITFADVAGVD---EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (731)
Q Consensus 327 ~~vtf~DV~G~d---evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se 400 (731)
+..+|++++|.+ ++.+.+..++. ...+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS------------GDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH------------TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 346899999833 44444443332 1246789999999999999999999876 47889999888
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcE-EEEEEcC
Q 004770 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV-IVLGATN 479 (731)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V-IVIaATN 479 (731)
+...+... +. ....|++|||||+|.+.... .....+..++.... ....+ +|+++++
T Consensus 91 ~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~----------~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASISTAL--------LE--GLEQFDLICIDDVDAVAGHP----------LWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCH----------HHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHHH--------HH--hccCCCEEEEeccccccCCH----------HHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 76543111 11 11346799999999985321 11122333333221 12233 5554544
Q ss_pred CCC---CCCccccCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 004770 480 RSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 480 ~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~ 554 (731)
.++ .+++++.+ ||. ..+.+++|+.+++.++++.++...+..+.++ .++.++..+.| +.+++.++++.+...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPED-VGRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHH-HHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 444 45688887 775 8999999999999999999998766655544 36778888876 899999999999988
Q ss_pred HHhhCCccccHHHHHHHHH
Q 004770 555 AGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 555 A~r~~~~~It~~d~~~Ale 573 (731)
|...+ ..|+.+++.+++.
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 86554 5699999988863
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.76 E-value=1.9e-17 Score=163.74 Aligned_cols=204 Identities=21% Similarity=0.238 Sum_probs=149.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------------
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------- 392 (731)
..+.+|++++|.+++++.|.+.+.. .+.+..++|+||||||||+++++++++++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3456789999999999988887642 2345679999999999999999999987432
Q ss_pred -----------EEEeechhhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcccchhhcccCCcccccchHHHHHHHH
Q 004770 393 -----------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (731)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (731)
++.+.... ......++.+++.+. ...|.+|+|||+|.+.. ..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------~~~~ 144 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFN 144 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------HHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------HHHH
Confidence 22222211 012234555555443 23578999999998731 2345
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
.|+..++.. ..++++|++||.++.+++++.+ |+ ..+.+++|+.++..++++.++...+..+.++ .++.+++.+.
T Consensus 145 ~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~ 218 (250)
T 1njg_A 145 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAE 218 (250)
T ss_dssp HHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHT
T ss_pred HHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcC
Confidence 666666633 3568888999999999999987 64 6899999999999999999997765555443 4778889997
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
| +++.+.++++.|...+ ...|+.+++++++
T Consensus 219 G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 219 G-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp T-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred C-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 7 8999999999885433 3479999998875
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.76 E-value=2.6e-18 Score=182.24 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=142.3
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
.+...+.+|+|++|.+++++.|++.+. ....|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 17 ~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~ 85 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK 85 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC
T ss_pred HHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC
Confidence 345566789999999999998888775 235667789999999999999999999999999999987632
Q ss_pred HHhhccchHHHHHHHHHHHhc-----CCeEEEEcccchhh-cccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 004770 403 ELYVGMGASRVRDLFARAKKE-----APSIIFIDEIDAVA-KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (731)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (731)
...+++.+...... .++||||||+|.+. .. ..+.|+..++.. ..++.+|+
T Consensus 86 -------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~---------------~~~~L~~~le~~--~~~~~iI~ 141 (324)
T 3u61_B 86 -------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE---------------SQRHLRSFMEAY--SSNCSIII 141 (324)
T ss_dssp -------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH---------------HHHHHHHHHHHH--GGGCEEEE
T ss_pred -------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH---------------HHHHHHHHHHhC--CCCcEEEE
Confidence 34455555543332 57899999999985 21 223444444422 24578888
Q ss_pred EcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHH-------HhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHH
Q 004770 477 ATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH-------VSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (731)
Q Consensus 477 ATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~-------l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~ 549 (731)
+||.++.+++++++ ||. .+.+++|+.+++.+|++.+ +...++.+.+.-.++.++..+.| ..+++.+.++
T Consensus 142 ~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~ 217 (324)
T 3u61_B 142 TANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELD 217 (324)
T ss_dssp EESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHH
T ss_pred EeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 99999999999998 875 7999999999876665443 33344555441246778888766 5566666666
Q ss_pred HHHHHHHhhCCccccHHHHHHHHHH
Q 004770 550 EAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 550 eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
.++ ....|+.+++.+++..
T Consensus 218 ~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 218 SYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHG------GGTCBCC---------
T ss_pred HHh------ccCCCCHHHHHHHhCC
Confidence 554 2335888887776543
No 51
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.76 E-value=6.7e-18 Score=179.81 Aligned_cols=215 Identities=19% Similarity=0.149 Sum_probs=149.1
Q ss_pred ccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh--HHHhhc
Q 004770 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF--VELYVG 407 (731)
Q Consensus 330 tf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~--~~~~vG 407 (731)
.+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++... .....|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 467899999998877765432 2479999999999999999999999999999887421 111222
Q ss_pred cchHH-HHHHHHHHHhcC---CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC---------CCCCcEEE
Q 004770 408 MGASR-VRDLFARAKKEA---PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIV 474 (731)
Q Consensus 408 ~~~~~-vr~lF~~A~~~a---P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~---------~~~~~VIV 474 (731)
..... ....|. .... .+||||||+|.+... ..+.|+..|+.. .....++|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~---------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK---------------VQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH---------------HHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCHH---------------HHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 11000 000000 0112 369999999987422 234444444421 12346788
Q ss_pred EEEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC----------------------CCCCcccC
Q 004770 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----------------------ELPLAKDI 527 (731)
Q Consensus 475 IaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----------------------~l~l~~dv 527 (731)
|+|+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++... ++.+++++
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 88888553 38999999 999899999999999999999987642 11122221
Q ss_pred CHHHHHHh-------------------CCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 004770 528 DLGDIASM-------------------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 528 dl~~LA~~-------------------t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~g 578 (731)
++.++.. ..|.|.+.+.++++.|...|..+++..|+.+|+.+++..++..
T Consensus 232 -~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 232 -EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp -HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 3333321 1266999999999999999999999999999999999887643
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=3.7e-18 Score=193.93 Aligned_cols=225 Identities=17% Similarity=0.229 Sum_probs=149.2
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcC--hhHHhhhCC---CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRS--PDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~--p~~~~~lg~---~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~ 398 (731)
+...+.+|+|++|.+++++.|.+.+..... +..|...|. ..++++||+||||||||++|+++|++++.+++.+++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 344567899999999999999888765221 112222232 367899999999999999999999999999999999
Q ss_pred hhhHHHhhccch-------HHHHHHHHHH-----HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC
Q 004770 399 SEFVELYVGMGA-------SRVRDLFARA-----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (731)
Q Consensus 399 se~~~~~vG~~~-------~~vr~lF~~A-----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 466 (731)
+++......... ..+..+|..+ ....++||||||+|.+...... .++.|+..++.
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~------------~l~~L~~~l~~- 177 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG------------GVGQLAQFCRK- 177 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT------------HHHHHHHHHHH-
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH------------HHHHHHHHHHh-
Confidence 876543221100 1123344433 2356889999999999653221 23344444432
Q ss_pred CCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHH
Q 004770 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (731)
Q Consensus 467 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~ 546 (731)
.+..+++|+++.....+++ +. |+...+.|++|+.+++.++|+..+...++.+++++ ++.|++.+.| ..+.+.+
T Consensus 178 -~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~-l~~la~~s~G-diR~~i~ 250 (516)
T 1sxj_A 178 -TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTRG-DIRQVIN 250 (516)
T ss_dssp -CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHTTT-CHHHHHH
T ss_pred -cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-cHHHHHH
Confidence 2244555555444444543 44 45668999999999999999988877666666554 8888988866 5555555
Q ss_pred HHHHHHHHHHhhCCccccHHHHHHHHH
Q 004770 547 LVNEAALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 547 Lv~eAa~~A~r~~~~~It~~d~~~Ale 573 (731)
+++.++ . ....|+.+++.+++.
T Consensus 251 ~L~~~~---~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 251 LLSTIS---T--TTKTINHENINEISK 272 (516)
T ss_dssp HHTHHH---H--HSSCCCTTHHHHHHH
T ss_pred HHHHHH---h--cCCCCchHHHHHHHH
Confidence 554433 2 345677777766665
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.75 E-value=8.6e-17 Score=172.69 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=160.3
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhc
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG 407 (731)
.-+|++++|.+++++.|...+..-+. ...++..++|+||||||||+||+++|+++++++...++..+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~---- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK---- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----
Confidence 34799999999998888776654321 1245678999999999999999999999999988877654321
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC----------------CCCc
Q 004770 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSA 471 (731)
Q Consensus 408 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------------~~~~ 471 (731)
...+..++.. ...++|+||||+|.+.... ...+ +..++.+. .-..
T Consensus 90 --~~~l~~~~~~--~~~~~v~~iDE~~~l~~~~------------~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 --QGDMAAILTS--LERGDVLFIDEIHRLNKAV------------EELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp --HHHHHHHHHH--CCTTCEEEEETGGGCCHHH------------HHHH---HHHHHTSCCCC---------------CC
T ss_pred --HHHHHHHHHH--ccCCCEEEEcchhhcCHHH------------HHHH---HHHHHhcccceeeccCcccccccccCCC
Confidence 1223333322 2346799999999885311 1222 22222111 0124
Q ss_pred EEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHH
Q 004770 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (731)
Q Consensus 472 VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eA 551 (731)
+.++++|+++..|++.+++ ||...+.+++|+.+++.+|++......+..++++ .+..|++++.| +++.+.++++.+
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~-~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDA-AAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHhcCC-ChHHHHHHHHHH
Confidence 6778899999999999998 9998899999999999999999887665555444 37788998887 789999999999
Q ss_pred HHHHHhhCCccccHHHHHHHHHHHh
Q 004770 552 ALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Alervi 576 (731)
...|..++...|+.+++.+|+++..
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 9888888888899999999998753
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=7.1e-17 Score=172.60 Aligned_cols=226 Identities=19% Similarity=0.272 Sum_probs=160.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc------CCcEEEeechh
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------EVPFISCSASE 400 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el------gvpfi~is~se 400 (731)
+...+++++|.++..+.|.+.+.... ....+..++|+||||||||+|++++++++ +.+++.+++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34556899999998887777553221 12456789999999999999999999988 89999999864
Q ss_pred hHH------Hh----------hccchHH-HHHHHHHHHhc-CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh
Q 004770 401 FVE------LY----------VGMGASR-VRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (731)
Q Consensus 401 ~~~------~~----------vG~~~~~-vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (731)
... .. .+..... ...+++..... .|+||+|||+|.+..... ...+..++..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~~~ 155 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLSRI 155 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHhhc
Confidence 321 11 1111222 33444444433 389999999999875421 1245666666
Q ss_pred hcCCCCCCcEEEEEEcCCC---CCCCccccCCCccc-eEEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHHHHHHhC
Q 004770 463 MDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMT 536 (731)
Q Consensus 463 mdg~~~~~~VIVIaATN~p---d~LDpALlRpGRFd-r~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~LA~~t 536 (731)
++.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++... ...+.++ .++.++..+
T Consensus 156 ~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~ 231 (386)
T 2qby_A 156 NSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN-VIKLCAALA 231 (386)
T ss_dssp HHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHH-HHHHHHHHH
T ss_pred hhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 6544 34678889999877 467888877 664 589999999999999999887531 1223222 355666666
Q ss_pred C---CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 537 T---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 537 ~---G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
. | +++.+.++++.|...|..++...|+.+++..|+.+..
T Consensus 232 ~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 232 AREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 5 6888889999999999888888999999999998765
No 55
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=3.7e-17 Score=174.06 Aligned_cols=211 Identities=19% Similarity=0.167 Sum_probs=152.0
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC------CcEEEe
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------VPFISC 396 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg------vpfi~i 396 (731)
.+..++.+|++++|.+++++.|...+. . ... .++||+||||||||++|+++|++++ ..++.+
T Consensus 28 ~~k~~p~~~~~i~g~~~~~~~l~~~l~---~--------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 28 VEKYRPKNLDEVTAQDHAVTVLKKTLK---S--------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp HHHTCCSSTTTCCSCCTTHHHHHHHTT---C--------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCHHHhhCCHHHHHHHHHHHh---c--------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEE
Confidence 345567789999999999988777542 1 122 3499999999999999999999864 468888
Q ss_pred echhhHHHhhccchHHHHHHHHHHH----------------hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHH
Q 004770 397 SASEFVELYVGMGASRVRDLFARAK----------------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (731)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~A~----------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 460 (731)
++++.. +...+++.+.... ...+.||||||+|.+... ..+.|+
T Consensus 96 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~---------------~~~~Ll 154 (353)
T 1sxj_D 96 NASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD---------------AQSALR 154 (353)
T ss_dssp CSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH---------------HHHHHH
T ss_pred cccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH---------------HHHHHH
Confidence 876531 1122222222111 124569999999988532 224555
Q ss_pred HhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCC
Q 004770 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (731)
Q Consensus 461 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (731)
..|+... ..+.+|.+||.++.+++++++ |+. .+.+++|+.++..++++..+...++.++++ .++.++..+.| .
T Consensus 155 ~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~ 227 (353)
T 1sxj_D 155 RTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDG-VLERILDISAG-D 227 (353)
T ss_dssp HHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHTSS-C
T ss_pred HHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-C
Confidence 5555433 345667788999999999998 776 889999999999999999987766666555 47888888887 6
Q ss_pred HHHHHHHHHHHHHHHHhhCCc-cccHHHHHHHHH
Q 004770 541 GADLANLVNEAALLAGRLNKV-VVEKIDFIHAVE 573 (731)
Q Consensus 541 gadL~~Lv~eAa~~A~r~~~~-~It~~d~~~Ale 573 (731)
.+.+.++++.++..+.+.+.. .|+.+++.+++.
T Consensus 228 ~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 228 LRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 888888888887776554433 799999887764
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=2e-17 Score=179.71 Aligned_cols=221 Identities=22% Similarity=0.290 Sum_probs=136.2
Q ss_pred cccCChHhHHHHHHHHHH-hcChhHH-----------------hhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 004770 333 DVAGVDEAKEELEEIVEF-LRSPDKY-----------------IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~-Lk~p~~~-----------------~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi 394 (731)
+|+|++++|+.|...+.. ++..... .......+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999887732 1111100 0112346678999999999999999999999999999
Q ss_pred EeechhhH-HHhhccc-hHHHHHHHHHHH----hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-
Q 004770 395 SCSASEFV-ELYVGMG-ASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD- 467 (731)
Q Consensus 395 ~is~se~~-~~~vG~~-~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~- 467 (731)
.+++..+. ..|.|.. ...+..++..+. ...++||||||+|.+...+.... ...+...+...+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS-ITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHHHHCCEE
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc-eecccchHHHHHHHHHHhhccce
Confidence 99998875 3455543 344556655432 33578999999999987643211 0111112336677787777431
Q ss_pred ------------------CCCcEEEEEEcCCC-----------------------------------------CCCCccc
Q 004770 468 ------------------SNSAVIVLGATNRS-----------------------------------------DVLDPAL 488 (731)
Q Consensus 468 ------------------~~~~VIVIaATN~p-----------------------------------------d~LDpAL 488 (731)
...++++|+++|.. ..+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456788887721 1245666
Q ss_pred cCCCccceEEEeeCCCHHHHHHHHHH----HHh-------cC--CCCCcccCCHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 004770 489 RRPGRFDRVVMVETPDKIGREAILKV----HVS-------KK--ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAAL 553 (731)
Q Consensus 489 lRpGRFdr~I~v~~Pd~~eR~eILk~----~l~-------~~--~l~l~~dvdl~~LA~~t~--G~SgadL~~Lv~eAa~ 553 (731)
++ ||+..+.+++++.++..+|+.. ++. .. .+.++++ .++.|+.... ....++|.++++.+..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE-AIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH-HHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 66 8988999999999999998862 111 11 1222222 2555665543 2467888888888877
Q ss_pred HHHh
Q 004770 554 LAGR 557 (731)
Q Consensus 554 ~A~r 557 (731)
.+..
T Consensus 338 ~~~~ 341 (376)
T 1um8_A 338 DIMF 341 (376)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.72 E-value=2.2e-17 Score=195.19 Aligned_cols=223 Identities=21% Similarity=0.275 Sum_probs=163.1
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEee
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is 397 (731)
.-+|++++|.++..+++.+++. ...+.++||+||||||||++|+++|+++ +.+++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4579999999998777666542 2356789999999999999999999986 66788888
Q ss_pred chhhH--HHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEE
Q 004770 398 ASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (731)
Q Consensus 398 ~se~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVI 475 (731)
++.+. ..+.|..+.+++.+|+.+....++||||||+|.+.+..... ... ....+.|...+ .+..+.+|
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---~~~---~~~~~~L~~~l----~~~~~~~I 319 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQ---VDAANLIKPLL----SSGKIRVI 319 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS---SCH---HHHHHHHSSCS----SSCCCEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC---cch---HHHHHHHHHHH----hCCCeEEE
Confidence 87776 35778888899999999988889999999999997654321 011 12223333333 34678899
Q ss_pred EEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc----CCCCCcccCCHHHHHHhCC-----CCCH
Q 004770 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTT-----GFTG 541 (731)
Q Consensus 476 aATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~t~-----G~Sg 541 (731)
++||.++ .+|++|.| ||+ .+.|+.|+.+++.+||+.++.. .++.+.++ .+..++..+. .+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCc
Confidence 9998653 57899998 998 7999999999999999987754 23333332 2445554433 3567
Q ss_pred HHHHHHHHHHHHHHHh----hCCccccHHHHHHHHHHHh
Q 004770 542 ADLANLVNEAALLAGR----LNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 542 adL~~Lv~eAa~~A~r----~~~~~It~~d~~~Alervi 576 (731)
..+..++++|+..+.. .....|+.+|+.+++.+..
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 7889999998876654 2456799999999998764
No 58
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=1.8e-17 Score=158.74 Aligned_cols=159 Identities=25% Similarity=0.380 Sum_probs=115.6
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEee
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is 397 (731)
..+|++++|.++..+++.+.+ .. ..+.++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVL---QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHH---hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 457899999999777666643 21 346789999999999999999999986 78999999
Q ss_pred chhhHH--HhhccchHHHHHHHHHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 004770 398 ASEFVE--LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (731)
Q Consensus 398 ~se~~~--~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (731)
+.++.. .+.+.....++.++..+. ...|+||||||+|.+...+... ........+..++ + ..++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~----~~~~~~~~l~~~~---~----~~~~~~ 154 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD----GAMDAGNMLKPAL---A----RGELHC 154 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCCCHHHHHHHH---H----TTSCCE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc----chHHHHHHHHHhh---c----cCCeEE
Confidence 887762 344555667777887664 4568899999999997543211 0111122333333 2 245778
Q ss_pred EEEcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHH
Q 004770 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAIL 512 (731)
Q Consensus 475 IaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL 512 (731)
|++||.++ .+++++++ ||+ .+.++.|+.+++.+||
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888775 78999998 998 6999999999998875
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.71 E-value=4.2e-17 Score=183.22 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=141.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~i 396 (731)
..-+|++|+|.++..+.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 456799999999988887776531 345689999999999999999999986 7889999
Q ss_pred echhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 004770 397 SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (731)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (731)
+++ ..|.|....+++.+|..+....|+||||| + .. ...+.|+..|+ +..+.+|+
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~~-------------~a~~~L~~~L~----~g~v~vI~ 296 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-AI-------------DASNILKPSLA----RGELQCIG 296 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-ch-------------hHHHHHHHhhc----CCCEEEEe
Confidence 887 66788888899999999998889999999 1 10 12244444444 45789999
Q ss_pred EcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc----CCCCCcccCCHHHHHHhCCC-----CCHH
Q 004770 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTG-----FTGA 542 (731)
Q Consensus 477 ATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~t~G-----~Sga 542 (731)
+||.++ .+|+++.| ||. .|.|+.|+.+++.+||+.++.. .++.+.++ .+..++..+.+ +.+.
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~-al~~l~~~s~~~~~~~~lp~ 372 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPD 372 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHhccCcCCc
Confidence 999987 69999999 998 5999999999999999988765 23333322 24555554333 3466
Q ss_pred HHHHHHHHHHHHHHhhCC-ccccHHHHHHHHHH
Q 004770 543 DLANLVNEAALLAGRLNK-VVVEKIDFIHAVER 574 (731)
Q Consensus 543 dL~~Lv~eAa~~A~r~~~-~~It~~d~~~Aler 574 (731)
...+++++|+..+..+.. ...+..+++..+++
T Consensus 373 ~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDE 405 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 888899888876655432 22233444444443
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.70 E-value=1e-16 Score=167.81 Aligned_cols=204 Identities=25% Similarity=0.275 Sum_probs=146.5
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeec
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~ 398 (731)
+...+.+|++++|.+++++.|.+.+. . ...|. +||+||||||||++|+++++++ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 33456789999999999888776543 1 23333 9999999999999999999986 456888887
Q ss_pred hhhHHHhhccchHHHHHHHHHHH------hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 004770 399 SEFVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (731)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (731)
++... ...+++.+.... ...++||+|||+|.+... ..+.|+..++.. ..++
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~L~~~le~~--~~~~ 133 (319)
T 2chq_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------------AQAALRRTMEMY--SKSC 133 (319)
T ss_dssp TSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH---------------HHHTTGGGTSSS--SSSE
T ss_pred ccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH---------------HHHHHHHHHHhc--CCCC
Confidence 76421 122223232222 144789999999998532 235566666643 3567
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 004770 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (731)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa 552 (731)
++|++||.++.+++++.+ |+. .+.+++|+.+++.++++.++.+.++.++++ .++.++..+.| +.+.+.++++.++
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHH-HHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 888899999999999998 765 899999999999999999998776665544 46777877765 6777777776654
Q ss_pred HHHHhhCCccccHHHHHHHH
Q 004770 553 LLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 553 ~~A~r~~~~~It~~d~~~Al 572 (731)
.. ...|+.+++.+++
T Consensus 209 ~~-----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 209 AI-----GEVVDADTIYQIT 223 (319)
T ss_dssp HS-----SSCBCHHHHHHHT
T ss_pred Hc-----CCCCCHHHHHHHH
Confidence 32 3468887776654
No 61
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.69 E-value=5.3e-17 Score=170.30 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=137.0
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-----
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----- 403 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~----- 403 (731)
++++|++++++.|...+......- ....++..++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999988876532100 0011233479999999999999999999987 56899999887643
Q ss_pred Hhhccch-----HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--C-------C
Q 004770 404 LYVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S-------N 469 (731)
Q Consensus 404 ~~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~-------~ 469 (731)
...|... .....+.........+||||||+|.+.. ...+.|+..|+... . -
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 2222110 0001222223334458999999998742 23355555554321 0 1
Q ss_pred CcEEEEEEcCC--------------------------CCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC----
Q 004770 470 SAVIVLGATNR--------------------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---- 519 (731)
Q Consensus 470 ~~VIVIaATN~--------------------------pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~---- 519 (731)
.++++|+|||. ...++++|++ ||+..+.+.+|+.+++.+|++.++.+.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36789999998 4468889987 999999999999999999999987652
Q ss_pred -----CCCCcccCCHHHHHHhCC--CCCHHHHHHHHHHHHHHHH
Q 004770 520 -----ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAG 556 (731)
Q Consensus 520 -----~l~l~~dvdl~~LA~~t~--G~SgadL~~Lv~eAa~~A~ 556 (731)
...+.++ .++.|+.... ..+.++|.++++.+...+.
T Consensus 237 ~~~~~~~~~~~~-~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 237 AEKRISLELTEA-AKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HTTTCEEEECHH-HHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HhCCcEEEeCHH-HHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 1112222 3556666655 5578899999988876653
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=6.5e-16 Score=166.09 Aligned_cols=223 Identities=15% Similarity=0.168 Sum_probs=159.0
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCC--eEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhh
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR--GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pk--gVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~ 401 (731)
...+++++|.++..+.|.+.+..... ...+. .++|+||||||||++++++++++ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34458999999999988887754211 12334 89999999999999999999988 678999987653
Q ss_pred HH------Hh---h-------ccchHHHHHHH-HHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhh
Q 004770 402 VE------LY---V-------GMGASRVRDLF-ARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (731)
Q Consensus 402 ~~------~~---v-------G~~~~~vr~lF-~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 463 (731)
.. .. . +.....+.+.+ .... ...|.||||||+|.+. ...++.|+..+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~~ 149 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRLG 149 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHHH
Confidence 21 11 0 11122222222 2222 2458899999999871 23456666666
Q ss_pred cCCCC--CCcEEEEEEcCCC---CCCCccccCCCccce-EEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHHHHHHh
Q 004770 464 DGFDS--NSAVIVLGATNRS---DVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASM 535 (731)
Q Consensus 464 dg~~~--~~~VIVIaATN~p---d~LDpALlRpGRFdr-~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~LA~~ 535 (731)
+.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+... ...++++ .++.+++.
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~ 226 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSED-ILQMIADI 226 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHH-HHHHHHHH
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHH
Confidence 53321 1478889999887 678888877 7764 89999999999999999988641 1123322 46677888
Q ss_pred C---------CCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhc
Q 004770 536 T---------TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 536 t---------~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~ 577 (731)
+ .| .++.+.++++.|...|..++...|+.+++.+++.....
T Consensus 227 ~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 227 TGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp HSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred HhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 8 45 68999999999999998888889999999999887653
No 63
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=6.1e-16 Score=162.09 Aligned_cols=205 Identities=19% Similarity=0.233 Sum_probs=148.9
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeec
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~ 398 (731)
+...+.+|++++|.+++++.|.+.+.. .+.|. +||+||||+|||++|+++++++ +.+++.+++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 334566899999999999988887641 23444 9999999999999999999986 456788877
Q ss_pred hhhHHHhhccchHHHHHHHHHHH-------hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCc
Q 004770 399 SEFVELYVGMGASRVRDLFARAK-------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (731)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~A~-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~ 471 (731)
++.. +...++++++... ...++||+|||+|.+... ..+.|+..++.. ..+
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~le~~--~~~ 137 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---------------AQQALRRTMELY--SNS 137 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH---------------HHHTTHHHHHHT--TTT
T ss_pred cccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH---------------HHHHHHHHHhcc--CCC
Confidence 6531 2345566665544 234789999999988532 234455555432 345
Q ss_pred EEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHH
Q 004770 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (731)
Q Consensus 472 VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eA 551 (731)
+++|.+||.++.+++++.+ |+. .+.+++|+.++..++++.++...++.++++ .++.++..+.| +.+.+.++++.+
T Consensus 138 ~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTND-GLEAIIFTAEG-DMRQAINNLQST 212 (323)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred ceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7778888999999999988 654 899999999999999999887666555444 46778888866 677777777766
Q ss_pred HHHHHhhCCccccHHHHHHHHH
Q 004770 552 ALLAGRLNKVVVEKIDFIHAVE 573 (731)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Ale 573 (731)
.... ..|+.+++.+++.
T Consensus 213 ~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 213 VAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHH-----SSBCHHHHHHHHT
T ss_pred HhcC-----CCcCHHHHHHHHC
Confidence 5321 3588888877663
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.68 E-value=7.4e-16 Score=165.19 Aligned_cols=204 Identities=21% Similarity=0.230 Sum_probs=149.9
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------------
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------- 392 (731)
..+.+|++++|.+++++.|.+.+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3456799999999999988887642 2456679999999999999999999987542
Q ss_pred -----------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHH
Q 004770 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (731)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (731)
++.++... ......++++++.+.. ..+.||+|||+|.+.. ...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~ 137 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFN 137 (373)
T ss_dssp HHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------HHHH
T ss_pred HHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH---------------HHHH
Confidence 22222211 1123456777776653 3468999999998742 2346
Q ss_pred HHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 458 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
.|+..++.. ..++++|++|+.++.+++++.+ |+ ..+.+++|+.++..++++.++...++.++++ .++.++..+.
T Consensus 138 ~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~-a~~~l~~~~~ 211 (373)
T 1jr3_A 138 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAE 211 (373)
T ss_dssp HHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHSS
T ss_pred HHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHCC
Confidence 677777642 3568888888888899999987 65 6899999999999999999987766655443 3677888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 538 G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
| +.+++.++++.+...+ ...|+.+++.+++
T Consensus 212 G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 212 G-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp S-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 7 7899999998876443 3458888776654
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.4e-16 Score=170.73 Aligned_cols=159 Identities=12% Similarity=0.102 Sum_probs=115.5
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeechhhHH
Q 004770 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE 403 (731)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is~se~~~ 403 (731)
+.|.++..++|...+.. .+....|.+++|+||||||||++++++++++ .+.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~--------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD--------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 55666655555554432 2234578899999999999999999999987 45788899865432
Q ss_pred ----------Hhh------ccchHHHHHHHHHH--HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC
Q 004770 404 ----------LYV------GMGASRVRDLFARA--KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (731)
Q Consensus 404 ----------~~v------G~~~~~vr~lF~~A--~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 465 (731)
.+. +.....++..|... ....++||||||+|.|. . ..++..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-------------q~~L~~l~~~~~- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-------------EKILQYFEKWIS- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-------------THHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-------------chHHHHHHhccc-
Confidence 222 22456678888875 34568899999999996 1 135666665443
Q ss_pred CCCCCcEEEEEEcCCCCC----CCccccCCCccc-eEEEeeCCCHHHHHHHHHHHHhc
Q 004770 466 FDSNSAVIVLGATNRSDV----LDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSK 518 (731)
Q Consensus 466 ~~~~~~VIVIaATN~pd~----LDpALlRpGRFd-r~I~v~~Pd~~eR~eILk~~l~~ 518 (731)
..+.+++||+++|..+. |++++++ ||. +.|.|++++.++..+|++..+..
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23567999999998865 3455555 786 68999999999999999999875
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.67 E-value=3.5e-16 Score=187.66 Aligned_cols=205 Identities=23% Similarity=0.320 Sum_probs=137.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~i 396 (731)
..-+|++++|.++..+++.+++. .+.+.++||+||||||||++|+++|+++ +.+++.+
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 35689999999987776666542 1345679999999999999999999987 8899999
Q ss_pred echhhH--HHhhccchHHHHHHHHHHHhc-CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEE
Q 004770 397 SASEFV--ELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (731)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 473 (731)
+++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+..... .. ....+.|...++ +..+.
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----g~---~~~~~~L~~~l~----~~~i~ 301 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE----GA---VDAGNMLKPALA----RGELR 301 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHH----TTCCC
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc----ch---HHHHHHHHHHHh----CCCeE
Confidence 999887 467888889999999999875 78999999999997554221 11 122333444443 34578
Q ss_pred EEEEcCCCC----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC----CCCCcccCCHHHHHHh-----CCCCC
Q 004770 474 VLGATNRSD----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGFT 540 (731)
Q Consensus 474 VIaATN~pd----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~-----t~G~S 540 (731)
+|++||.++ .+|++|.| ||+. +.++.|+.+++.+||+.++... ++.+.++ .+..++.. +..|.
T Consensus 302 ~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~-al~~~~~ls~r~i~~~~l 377 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDS-AIIAAATLSHRYITERRL 377 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHCCSSCT
T ss_pred EEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHH-HHHHHHHHHhhhcccccC
Confidence 889998764 47999999 9985 9999999999999998776532 3333322 24444443 44677
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004770 541 GADLANLVNEAALLAGRL 558 (731)
Q Consensus 541 gadL~~Lv~eAa~~A~r~ 558 (731)
+.....++++|+..+..+
T Consensus 378 p~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 378 PDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 889999999988777544
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=3.4e-16 Score=185.31 Aligned_cols=199 Identities=20% Similarity=0.294 Sum_probs=136.6
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV 406 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~v 406 (731)
.++|+|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 35799999999999888875432110 011233 69999999999999999999987 78999999999987665
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC---------CCCcEEEEEE
Q 004770 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGA 477 (731)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~~~~VIVIaA 477 (731)
.. ...++...+...++||||||||.+.. .+++.|+..|+.-. ...+++||+|
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKAHP---------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSCH---------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred cc----cchhhHHHHhCCCeEEEEeCccccCH---------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 44 12233444455678999999998732 34566666665321 1246799999
Q ss_pred cCCCCC------------CCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC---------CCCCcccCCHHHHHH--
Q 004770 478 TNRSDV------------LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---------ELPLAKDIDLGDIAS-- 534 (731)
Q Consensus 478 TN~pd~------------LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~---------~l~l~~dvdl~~LA~-- 534 (731)
||.+.. ++|+|++ |||..|.|++|+.+++.+|++.++... .+.+.++ .++.|+.
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~ 703 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDA-AKAKVAEEG 703 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHH-HHHHHHGGG
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHH-HHHHHHHhC
Confidence 997644 7888887 999999999999999999999887541 1112211 2445554
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 004770 535 MTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 535 ~t~G~SgadL~~Lv~eAa~~A 555 (731)
....+..++|+++++++...+
T Consensus 704 ~~~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 704 VDLEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp CCTTTTTTTHHHHHHHHTHHH
T ss_pred CCCCCCChHHHHHHHHHHHHH
Confidence 334456678888877665443
No 68
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=9.1e-16 Score=161.07 Aligned_cols=204 Identities=22% Similarity=0.269 Sum_probs=144.5
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeec
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 398 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-----vpfi~is~ 398 (731)
+...+.+|++++|.+++++.|...+.. .+. .++||+||||||||++|+++++++. .+++.+++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 345667899999999999998887642 122 3599999999999999999999863 35788887
Q ss_pred hhhHHHhhccchHHHHHHHHHHH------hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcE
Q 004770 399 SEFVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (731)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 472 (731)
++.... ..+++.+.... ...++||+|||+|.+... ..+.|+..++.. ..++
T Consensus 85 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~L~~~le~~--~~~~ 141 (327)
T 1iqp_A 85 SDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---------------AQQALRRTMEMF--SSNV 141 (327)
T ss_dssp TCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH---------------HHHHHHHHHHHT--TTTE
T ss_pred cccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH---------------HHHHHHHHHHhc--CCCC
Confidence 654321 11222222211 145789999999988421 235556656532 3467
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 004770 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (731)
Q Consensus 473 IVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa 552 (731)
.+|++||.++.+++++.+ |+. .+.+++|+.++..++++..+...++.++++ .++.++..+.| +.+.+.++++.+.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHH-HHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 788889999999999987 765 789999999999999999988766655444 46778888766 7777777777654
Q ss_pred HHHHhhCCccccHHHHHHHH
Q 004770 553 LLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 553 ~~A~r~~~~~It~~d~~~Al 572 (731)
.. ...|+.+++..++
T Consensus 217 ~~-----~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 217 AL-----DKKITDENVFMVA 231 (327)
T ss_dssp TT-----CSEECHHHHHHHT
T ss_pred hc-----CCCCCHHHHHHHH
Confidence 32 2357776665544
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=8.8e-16 Score=181.81 Aligned_cols=190 Identities=22% Similarity=0.334 Sum_probs=136.4
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~i 396 (731)
..-+|++++|.++.++++.+++. .+.+.++||+||||||||++|+++|+.+ +++++.+
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHh------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 45578999999999888877653 2445689999999999999999999996 8899988
Q ss_pred echhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEE
Q 004770 397 SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (731)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 476 (731)
++ ...|.|..+.+++.+|..+....|+||||| + . ....+.|+..|+ +..+.+|+
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~-~-------------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-A-------------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C-c-------------hhHHHHHHHHHh----cCCEEEEe
Confidence 87 456788888999999999999999999999 1 0 012244444444 46789999
Q ss_pred EcCCCC-----CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC----CCCCcccCCHHHHHHh-----CCCCCHH
Q 004770 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGFTGA 542 (731)
Q Consensus 477 ATN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~-----t~G~Sga 542 (731)
+||..+ .+|++++| ||. .|.|+.|+.+++.+||+.++... +..+.++ .+..++.. +.++.+.
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~-al~~~~~~s~~~i~~~~~p~ 372 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPD 372 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTH
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhcccccCcCCc
Confidence 999988 79999999 994 69999999999999999877652 2222221 23334332 3466788
Q ss_pred HHHHHHHHHHHHHHhh
Q 004770 543 DLANLVNEAALLAGRL 558 (731)
Q Consensus 543 dL~~Lv~eAa~~A~r~ 558 (731)
....++++|+..+..+
T Consensus 373 ~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 373 KAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8889999988766544
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.64 E-value=6e-16 Score=182.99 Aligned_cols=196 Identities=21% Similarity=0.332 Sum_probs=136.4
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCC----CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH---
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGA----RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--- 404 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~----~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~--- 404 (731)
++|+|++++++.+...+...+ .|. ++..++||+||||||||++|+++|..++.+|+.++++++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 468999999998888775432 222 233469999999999999999999999999999999988653
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-------
Q 004770 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS------- 468 (731)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~------- 468 (731)
|+|.... ..+....+...++||||||||.+. ..+++.|+..|+.-.-
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~---------------~~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH---------------PDVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC---------------HHHHHHHHHHHHHSEEEETTTEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC---------------HHHHHHHHHHhcCcEEEcCCCCE
Confidence 3332221 223444455567899999999863 2356677777663210
Q ss_pred --CCcEEEEEEcCCCC-------------------------CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC--
Q 004770 469 --NSAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-- 519 (731)
Q Consensus 469 --~~~VIVIaATN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~-- 519 (731)
-.+++||+|||... .++|+|++ |||..|.|++|+.+++.+|++.++.+.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~ 671 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQV 671 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 14588999999753 57888887 999999999999999999999988631
Q ss_pred -----C--CCCcccCCHHHHHHhC--CCCCHHHHHHHHHHHHHH
Q 004770 520 -----E--LPLAKDIDLGDIASMT--TGFTGADLANLVNEAALL 554 (731)
Q Consensus 520 -----~--l~l~~dvdl~~LA~~t--~G~SgadL~~Lv~eAa~~ 554 (731)
+ +.+.++ .++.|+... ..+..++|.++++.+...
T Consensus 672 ~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 672 QLDQKGVSLEVSQE-ARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHTTEEEEECHH-HHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HHHHCCcEEEeCHH-HHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 1 112222 244455433 234467777777766544
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=1.5e-16 Score=152.58 Aligned_cols=152 Identities=26% Similarity=0.358 Sum_probs=109.9
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEee
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------gvpfi~is 397 (731)
..+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 457999999998777666544 22 346689999999999999999999986 78899998
Q ss_pred chhhHHH--hhccchHHHHHHHHHHHhc-CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 004770 398 ASEFVEL--YVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (731)
Q Consensus 398 ~se~~~~--~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (731)
+..+... +.+.....+..++..+... .|+||||||+|.+...+... ... . ...+.|...++ ...+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~-~---~~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGA-L---DAGNILKPMLA----RGELRC 155 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTS-C---CTHHHHHHHHH----TTCSCE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccc-h---HHHHHHHHHHh----cCCeeE
Confidence 8877642 4455556677777777654 68899999999997543211 000 1 12233333333 255788
Q ss_pred EEEcCCCC-----CCCccccCCCccceEEEeeCCC
Q 004770 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPD 504 (731)
Q Consensus 475 IaATN~pd-----~LDpALlRpGRFdr~I~v~~Pd 504 (731)
|++||.++ .+|+++++ ||+ .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99998765 68999999 999 48898885
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.61 E-value=6.1e-16 Score=175.23 Aligned_cols=209 Identities=17% Similarity=0.156 Sum_probs=132.8
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechh-hHHHhhcc
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASE-FVELYVGM 408 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se-~~~~~vG~ 408 (731)
..++|.+++++.+...+. ...++||+||||||||+||+++|..++ .+|..+.+.- -.+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 358899998877665442 124799999999999999999999884 4666655531 11222221
Q ss_pred -chHH--HHHHHHHHHhc---CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC---------CCCCcEE
Q 004770 409 -GASR--VRDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVI 473 (731)
Q Consensus 409 -~~~~--vr~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~---------~~~~~VI 473 (731)
.... -...|..+... .++|||||||+.+.. .+.+.|+..|+.. ..... +
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~---------------~~q~~LL~~lee~~v~i~G~~~~~~~~-~ 151 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERQFRNGAHVEKIPMR-L 151 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCCH---------------HHHHHHHHHHHSSEEECSSSEEECCCC-E
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH---------------HHHHHHHHHHHHHhccCCCCcCCcchh-h
Confidence 1100 11223222222 477999999987532 2445666666421 11123 4
Q ss_pred EEEEcCCCCC---CCccccCCCccceEEEeeCCCH-HHHHHHHHHHHhcC-----------------------CCCCccc
Q 004770 474 VLGATNRSDV---LDPALRRPGRFDRVVMVETPDK-IGREAILKVHVSKK-----------------------ELPLAKD 526 (731)
Q Consensus 474 VIaATN~pd~---LDpALlRpGRFdr~I~v~~Pd~-~eR~eILk~~l~~~-----------------------~l~l~~d 526 (731)
+|+|||.+.. ..+++++ ||...+.+++|+. +++.+|++.+.... .+.++++
T Consensus 152 iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~ 229 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH 229 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH
T ss_pred hhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH
Confidence 5777775322 3458998 9999999999987 77888888765321 1112211
Q ss_pred CCHHHHHHh---------CCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 527 IDLGDIASM---------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 527 vdl~~LA~~---------t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
+ ++.++.. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..
T Consensus 230 v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~ 284 (500)
T 3nbx_X 230 V-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKD 284 (500)
T ss_dssp H-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGG
T ss_pred H-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHh
Confidence 1 2333322 3588999999999999999999999999999887 4433
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.60 E-value=3.2e-15 Score=154.15 Aligned_cols=206 Identities=22% Similarity=0.209 Sum_probs=120.8
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHHH-
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL- 404 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---vpfi~is~se~~~~- 404 (731)
.+|++++|.+++.+.+.+.+.... ..+.++||+||||||||++|++++..+. .||+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 479999999999988887765432 2346799999999999999999999874 79999999876432
Q ss_pred ----hhccchHH-------HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCC-------
Q 004770 405 ----YVGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------- 466 (731)
Q Consensus 405 ----~vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~------- 466 (731)
..|..... ....|..+ ..++|||||||.+... ....|+..|+..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~---------------~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM---------------VQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH---------------HHHHHHHHHHHCEECCCCC
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH---------------HHHHHHHHHHhCCeecCCC
Confidence 11211100 01123332 3569999999988532 123333333311
Q ss_pred --CCCCcEEEEEEcCCC-------CCCCccccCCCccceEEEeeCCCHHHH----HHHHHHHHhc----CCCCCcccCC-
Q 004770 467 --DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVSK----KELPLAKDID- 528 (731)
Q Consensus 467 --~~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR----~eILk~~l~~----~~l~l~~dvd- 528 (731)
....++.+|+|||.+ ..++++|.+ ||.. +.+..|+..+| ..+++.++.. .+.+....++
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~ 211 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTE 211 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCH
Confidence 112457899999975 246788887 8863 45566665544 4444444432 2221101233
Q ss_pred --HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 004770 529 --LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (731)
Q Consensus 529 --l~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~ 568 (731)
++.|.......+.++|.++++.++..+. ...|+.+|+
T Consensus 212 ~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 212 RARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 3444455433467899999998887653 334554443
No 74
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.7e-16 Score=183.45 Aligned_cols=221 Identities=19% Similarity=0.158 Sum_probs=141.2
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe----echhhHHH---
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC----SASEFVEL--- 404 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i----s~se~~~~--- 404 (731)
..++|++++|+.+.-.+..-. +........+...++||+||||||||+||+++|+.++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~-~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV-PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC-CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCC-cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 468999998877633221110 0000011223344799999999999999999999998766542 22222111
Q ss_pred --hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC-----------CCCc
Q 004770 405 --YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSA 471 (731)
Q Consensus 405 --~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~ 471 (731)
+.|... .....+..| ..+|+||||||.+... ..+.|+..|+.-. .+.+
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~~~---------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMRDE---------------DRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCCCSH---------------HHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhCCHh---------------HhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 111100 001123333 2459999999987432 2345555555321 1356
Q ss_pred EEEEEEcCCCC-------------CCCccccCCCccce-EEEeeCCCHHHHHHHHHHHHhcCCC----------------
Q 004770 472 VIVLGATNRSD-------------VLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKEL---------------- 521 (731)
Q Consensus 472 VIVIaATN~pd-------------~LDpALlRpGRFdr-~I~v~~Pd~~eR~eILk~~l~~~~l---------------- 521 (731)
+.||||||.+. .|+++|++ |||. .+..+.|+.+ ...|+++.+.....
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 78999999886 89999999 9985 4555677777 77888777654221
Q ss_pred ---------CCcccCCHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 522 ---------PLAKDIDLGDIASM--------------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 522 ---------~l~~dvdl~~LA~~--------------t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
.+. +...+.|... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|+.-..
T Consensus 512 ~~ar~~~~p~ls-~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 512 AYARKYVTPKIT-SEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHHHCCCCC-CCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 111 1123334333 45789999999999999999999999999999999996543
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.1e-14 Score=155.92 Aligned_cols=210 Identities=19% Similarity=0.219 Sum_probs=144.6
Q ss_pred cccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----cEEEee
Q 004770 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISCS 397 (731)
Q Consensus 323 ~~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-----pfi~is 397 (731)
.+...+.+|++++|++++++.|...+.. .+.|. +||+||||||||++|+++|+.+.. .++.++
T Consensus 16 ~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 16 VEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 4455677899999999999988876641 23444 999999999999999999998642 356666
Q ss_pred chhhHHHhhccchHHHHHHHHHHHh------cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCc
Q 004770 398 ASEFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (731)
Q Consensus 398 ~se~~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~ 471 (731)
+++. .+...+++.+..... ..+.|++|||+|.+... ..+.|+..|+... ..
T Consensus 84 ~~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~le~~~--~~ 140 (340)
T 1sxj_C 84 ASDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA---------------AQNALRRVIERYT--KN 140 (340)
T ss_dssp TTSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH---------------HHHHHHHHHHHTT--TT
T ss_pred Cccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH---------------HHHHHHHHHhcCC--CC
Confidence 6542 122344444443321 23679999999988422 2355666665433 45
Q ss_pred EEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHH
Q 004770 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (731)
Q Consensus 472 VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eA 551 (731)
+.+|.+||.+..+.+++++ |+. .+.+..++.++..+++...+...++.+.++ .+..++..+.| ..+.+.++++.+
T Consensus 141 ~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~~ 215 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQSC 215 (340)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTTT
T ss_pred eEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 5677788999999999998 765 788999999999999998887666655544 36667777765 566666666555
Q ss_pred HHHHHhhCCccccHHHHHHHH
Q 004770 552 ALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Al 572 (731)
...+...+...|+.+++.+++
T Consensus 216 ~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 216 KATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTCSSSCCCBCHHHHHHHT
T ss_pred HHhcCCcccccccHHHHHHHh
Confidence 433332233468888876654
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.9e-14 Score=153.77 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=133.3
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--------------
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv-------------- 391 (731)
..+.+|++++|++++++.|+..+. + ..+.|. ++|+||||+|||++++++|+++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 356689999999999887776541 1 124455 999999999999999999996421
Q ss_pred ---------------cEEEeechhhHHHhhccchHHHHHHHHHHH--------------hcCCeEEEEcccchhhcccCC
Q 004770 392 ---------------PFISCSASEFVELYVGMGASRVRDLFARAK--------------KEAPSIIFIDEIDAVAKSRDG 442 (731)
Q Consensus 392 ---------------pfi~is~se~~~~~vG~~~~~vr~lF~~A~--------------~~aP~ILfIDEIDaL~~~r~~ 442 (731)
+++.++.++.. ......+++.++.+. ...|.||+|||+|.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---- 148 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---- 148 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH----
Confidence 12333322210 001113555555442 23577999999998632
Q ss_pred cccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCC
Q 004770 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELP 522 (731)
Q Consensus 443 ~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~ 522 (731)
...+.|+..|+... .++.+|.+||.++.+.+++++ |+ ..+.+++|+.++..++++..+...++.
T Consensus 149 -----------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 -----------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -----------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred -----------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 12345555555433 357788889999999999998 66 689999999999999999998776665
Q ss_pred Cc-ccCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 004770 523 LA-KDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 523 l~-~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A 555 (731)
++ ++ .++.+++.+.| +.+++.++++.+...+
T Consensus 213 ~~~~~-~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 213 LETKD-ILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp ECCSH-HHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCcHH-HHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 55 33 47788888876 7888888888776544
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.54 E-value=6.1e-15 Score=156.67 Aligned_cols=202 Identities=20% Similarity=0.290 Sum_probs=127.3
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH----
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~---- 404 (731)
++++|.+++.+.+.+.+.... ..+.+|||+||||||||++|++++... +.||+.++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999888888776542 345679999999999999999999965 689999999876432
Q ss_pred -hhccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC---------
Q 004770 405 -YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------- 467 (731)
Q Consensus 405 -~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------- 467 (731)
..|... ......|+.|. .++|||||||.+... ....|+..++...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~---------------~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL---------------MQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH---------------HHHHHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH---------------HHHHHHHHHhcCEeeecCCccc
Confidence 122110 01223455553 459999999998532 2234444444221
Q ss_pred CCCcEEEEEEcCCC-------CCCCccccCCCccceEEEeeCCCHHHH----HHHHHHHHhc----CC---CCCcccCCH
Q 004770 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVSK----KE---LPLAKDIDL 529 (731)
Q Consensus 468 ~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR----~eILk~~l~~----~~---l~l~~dvdl 529 (731)
....+.||+|||.+ ..++++|.. ||. .+.+..|+..+| ..++++++.. .+ ..+.++ .+
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~-a~ 209 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQ-AM 209 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHH-HH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHH-HH
Confidence 12458899999975 234555655 664 566666766554 3456655532 11 112222 25
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHH
Q 004770 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (731)
Q Consensus 530 ~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~ 568 (731)
+.|......-+.++|.++++.|+..+. ...|+.+|+
T Consensus 210 ~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l 245 (304)
T 1ojl_A 210 DLLIHYDWPGNIRELENAIERAVVLLT---GEYISEREL 245 (304)
T ss_dssp HHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGS
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhh
Confidence 556666633477899999998887652 345655554
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=1.6e-13 Score=148.81 Aligned_cols=229 Identities=16% Similarity=0.125 Sum_probs=150.4
Q ss_pred cccccccCChHhHHHHHHHH-HHhcChhHHhhhCCCCCCeEEE--EcCCCCcHHHHHHHHHHhc---------CCcEEEe
Q 004770 329 ITFADVAGVDEAKEELEEIV-EFLRSPDKYIRLGARPPRGVLL--VGLPGTGKTLLAKAVAGEA---------EVPFISC 396 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV-~~Lk~p~~~~~lg~~~pkgVLL--~GPPGTGKT~LAkAlA~el---------gvpfi~i 396 (731)
...++++|.++..++|.+.+ ...... ....+..++| +||||+|||+|++++++++ +.+++.+
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34578999999888888876 543211 0024567999 9999999999999999876 5677888
Q ss_pred echh------hHHHh---hc-------cchHH-HHHHHHHHH-hcCCeEEEEcccchhhcccCCcccccchHHHHHHHHH
Q 004770 397 SASE------FVELY---VG-------MGASR-VRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (731)
Q Consensus 397 s~se------~~~~~---vG-------~~~~~-vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (731)
+|.. +.... .+ ..... ...+.+... ...|+||+|||+|.+...+.. . ...+..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~----~~~l~~ 163 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----A----AEDLYT 163 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----C----HHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----c----hHHHHH
Confidence 8643 22111 11 11122 222222222 245889999999998643110 1 234444
Q ss_pred HHHhhcCCCC-C--CcEEEEEEcCCCC---CCC---ccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCC--CCcccC
Q 004770 459 LLTEMDGFDS-N--SAVIVLGATNRSD---VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL--PLAKDI 527 (731)
Q Consensus 459 LL~emdg~~~-~--~~VIVIaATN~pd---~LD---pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l--~l~~dv 527 (731)
++..++.... . .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++..+..... .+.+ .
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~-~ 240 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEP-R 240 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCH-H
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCCh-H
Confidence 4444443321 2 6788888887664 344 55666 56556999999999999999887653211 1222 2
Q ss_pred CHHHHHHhCC------CCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 528 DLGDIASMTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 528 dl~~LA~~t~------G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
.+..++..+. | .++.+.++++.|...|..++...++.+++..++....
T Consensus 241 ~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 3566778887 7 6889999999998888888888899999988886643
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=1.5e-14 Score=173.63 Aligned_cols=203 Identities=24% Similarity=0.312 Sum_probs=138.3
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH---
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~--- 404 (731)
+++|+|++++++.+...+...+..-. -..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46789999999999888865431100 001223479999999999999999999998 789999999877543
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--C-----
Q 004770 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--S----- 468 (731)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~----- 468 (731)
|+|... ...+....+...++||||||||.+. ..+++.|+..|+.-. .
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~---------------~~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH---------------PDVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC---------------HHHHHHHHHHHTTTEECCSSSCC
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC---------------HHHHHHHHHHhccCceECCCCCE
Confidence 222211 1233344444556899999999763 235677777776321 0
Q ss_pred --CCcEEEEEEcCCC--------------------------CCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcC-
Q 004770 469 --NSAVIVLGATNRS--------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK- 519 (731)
Q Consensus 469 --~~~VIVIaATN~p--------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~- 519 (731)
-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|++.++.+.
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1367899999972 346677776 999999999999999999999887631
Q ss_pred --------CCCCcccCCHHHHHHhCC--CCCHHHHHHHHHHHHHHHH
Q 004770 520 --------ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAG 556 (731)
Q Consensus 520 --------~l~l~~dvdl~~LA~~t~--G~SgadL~~Lv~eAa~~A~ 556 (731)
.+.+.++ .++.|+.... .+..++|.++++.+...+.
T Consensus 775 ~~~~~~~~~~~~~~~-a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 775 ARLAEKRISLELTEA-AKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHHTTTCEEEECHH-HHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHhCCceEEECHH-HHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 1112222 2555666554 5577888888887766553
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.41 E-value=4.5e-13 Score=155.00 Aligned_cols=217 Identities=27% Similarity=0.353 Sum_probs=133.7
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeechhh-
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF- 401 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp---fi~is~se~- 401 (731)
.+..+|++++|.+++++.+...+. ....++|+||||||||+||+++|+.+... .+.+.+...
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred ccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 456789999999999887776653 12479999999999999999999987432 121111100
Q ss_pred -----------------HHHh--------------------------------------hccchHHHHHHHH--------
Q 004770 402 -----------------VELY--------------------------------------VGMGASRVRDLFA-------- 418 (731)
Q Consensus 402 -----------------~~~~--------------------------------------vG~~~~~vr~lF~-------- 418 (731)
.+.. +.........+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 0000 0000001111221
Q ss_pred ---------------HHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcC-------C----------
Q 004770 419 ---------------RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-------F---------- 466 (731)
Q Consensus 419 ---------------~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-------~---------- 466 (731)
......+.+|||||+|.+... ..+.|+..|+. .
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~---------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLK---------------MQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHH---------------HHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhCCHH---------------HHHHHHHHHHcCcEEecccccccccccCC
Confidence 011234669999999987321 22334443331 1
Q ss_pred --CCCCcEEEEEEcCCC--CCCCccccCCCccc---eEEEeeC--C-CHHHHHHHHHHHHhc-----CCCCCcccCCHHH
Q 004770 467 --DSNSAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--P-DKIGREAILKVHVSK-----KELPLAKDIDLGD 531 (731)
Q Consensus 467 --~~~~~VIVIaATN~p--d~LDpALlRpGRFd---r~I~v~~--P-d~~eR~eILk~~l~~-----~~l~l~~dvdl~~ 531 (731)
.....+.||+|||+. +.++++|++ ||+ ..+.++. + ..+....+++...+. ....+.++ .+..
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~e-Al~~ 322 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKE-AVEE 322 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHH-HHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHH-HHHH
Confidence 112367899999986 679999998 886 4555432 2 345555565544432 11223333 2444
Q ss_pred HHHh---CCCC------CHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Q 004770 532 IASM---TTGF------TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (731)
Q Consensus 532 LA~~---t~G~------SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Aler 574 (731)
|.+. ..|- +.+++.++++.|...|..+++..|+.+|+.+|+.+
T Consensus 323 Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 323 IVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4432 2553 78999999999999998889999999999999965
No 81
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.39 E-value=1.3e-13 Score=173.34 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=108.7
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHH-hcC----------hhHHhh------hCCC----------CCCe--EEEEcCC
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRS----------PDKYIR------LGAR----------PPRG--VLLVGLP 374 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~-Lk~----------p~~~~~------lg~~----------~pkg--VLL~GPP 374 (731)
...+.++|+||.|++++|+.+.+.+.+ ++. ++.|.. .|.. +|+| +||||||
T Consensus 1012 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1012 GSASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred cccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCC
Confidence 345679999999999999999998877 422 445554 2222 5555 9999999
Q ss_pred CCcHHHHHHHHHHhc---CCcEEEeechhhH------------HHhhcc----chHHHHHHHHHHHhcCCeEEEEcccch
Q 004770 375 GTGKTLLAKAVAGEA---EVPFISCSASEFV------------ELYVGM----GASRVRDLFARAKKEAPSIIFIDEIDA 435 (731)
Q Consensus 375 GTGKT~LAkAlA~el---gvpfi~is~se~~------------~~~vG~----~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (731)
|||||+||+++|.+. +-|.+.|+..+.. +.+++. +++.++.+|..|+..+||+||+||+|+
T Consensus 1092 g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~a 1171 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1171 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred CCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHh
Confidence 999999999999876 4566666655433 455566 789999999999999999999999999
Q ss_pred hhcccCCc--ccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 436 VAKSRDGR--FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 436 L~~~r~~~--~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
|.+.+... ..........+.++++|.+|++.....+|+|| +||+.
T Consensus 1172 l~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1172 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 99874311 01111244567899999999987777788888 77764
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.37 E-value=7.5e-12 Score=134.20 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=115.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------------------EEEeechhhHHHhhccchHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 417 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvp------------------------fi~is~se~~~~~vG~~~~~vr~lF 417 (731)
.+.|..+||+||||+|||++|+++|+.+.++ ++.+...+ .-...+...+++++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHH
Confidence 4667889999999999999999999987543 22222210 00012345678887
Q ss_pred HHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 004770 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (731)
Q Consensus 418 ~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (731)
+.+.. ..+.|++|||+|.+.. ...|.||..|+. +..++++|.+||.++.|.+++++ |
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--R 158 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLTD---------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--R 158 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--T
T ss_pred HHHhhccccCCcEEEEECchhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--c
Confidence 77653 3467999999999842 235788888874 34567888889999999999998 5
Q ss_pred cceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 004770 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (731)
Q Consensus 494 Fdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa 552 (731)
. ..+.+++|+.++..++++... .+++ ..++.+++.+.| +.+.+.++++.+.
T Consensus 159 c-~~~~~~~~~~~~~~~~L~~~~-----~~~~-~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 159 C-RLHYLAPPPEQYAVTWLSREV-----TMSQ-DALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp S-EEEECCCCCHHHHHHHHHHHC-----CCCH-HHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred c-eeeeCCCCCHHHHHHHHHHhc-----CCCH-HHHHHHHHHcCC-CHHHHHHHhccch
Confidence 4 379999999999999888765 2222 245667887766 6777777766554
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.37 E-value=6.3e-13 Score=125.54 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=79.4
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM 408 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~ 408 (731)
++++|.+++.+++.+.+..+. ..+.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 368899998888887765432 345579999999999999999999987 78999 999876443
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 409 GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 409 ~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
......|..+. .++|||||||.+.... ...|+..|... ...+.+|+|||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~~~---------------q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTREQ---------------QYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCHHH---------------HHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCHHH---------------HHHHHHHHhhc--CCCEEEEEECCcC
Confidence 33455666664 4599999999985322 13344444322 3456788899875
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.36 E-value=2.1e-13 Score=128.74 Aligned_cols=112 Identities=17% Similarity=0.304 Sum_probs=79.8
Q ss_pred cccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHH
Q 004770 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (731)
Q Consensus 333 DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~ 412 (731)
+++|.+++.+++.+.+..+. ..+.+|||+||||||||++|++++.+.. ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 68899999998888776432 2345799999999999999999999988 99999999876543
Q ss_pred HHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 413 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
...+|+.+. .++|||||+|.+.... ...+.+++.+.. +.++.+|+|||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~~------------q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRNI------------QTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHHH------------HHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHHH------------HHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 455666554 4699999999985332 122333333321 3567888898865
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=3.5e-11 Score=128.14 Aligned_cols=142 Identities=14% Similarity=0.203 Sum_probs=105.3
Q ss_pred CChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc------CCcEEEeechhhHHHhhccc
Q 004770 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------EVPFISCSASEFVELYVGMG 409 (731)
Q Consensus 336 G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el------gvpfi~is~se~~~~~vG~~ 409 (731)
|++++.+.|+..+.. + + +..+||+||||+|||++|+++|+.+ +..++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 567777777776531 1 2 4579999999999999999999864 45677776542 0234
Q ss_pred hHHHHHHHHHHHhc----CCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCC
Q 004770 410 ASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (731)
Q Consensus 410 ~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 485 (731)
...++++++.+... ...|+||||+|.+.. ...|.||..|+. +...+++|.+||.++.|.
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~---------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ---------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH---------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChHhCh
Confidence 45688888887643 246999999999852 235788888884 335677777788899999
Q ss_pred ccccCCCccceEEEeeCCCHHHHHHHHHHHH
Q 004770 486 PALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (731)
Q Consensus 486 pALlRpGRFdr~I~v~~Pd~~eR~eILk~~l 516 (731)
|++++ | .+.+++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99998 6 78999999999999998876
No 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.24 E-value=2.4e-11 Score=103.60 Aligned_cols=75 Identities=33% Similarity=0.512 Sum_probs=69.8
Q ss_pred eCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhc
Q 004770 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (731)
Q Consensus 501 ~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~ 577 (731)
++|+.++|.+||+.|+++ .++..+++++.||..|+||||+||.++|++|++.|.+++...|+++||.+|+++++.
T Consensus 1 plPd~~~R~~Il~~~l~~--~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK--MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT--SEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcC--CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999976 456688999999999999999999999999999999999999999999999998864
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.22 E-value=2.6e-11 Score=105.87 Aligned_cols=77 Identities=32% Similarity=0.468 Sum_probs=70.6
Q ss_pred eeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcc
Q 004770 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (731)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~g 578 (731)
-.+||.++|++||+.++++. ++..++|++.||+.|+||||+||.++|++|++.|.++....|+++||.+|++++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~--~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKM--NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTS--EECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 36899999999999999764 566889999999999999999999999999999999999999999999999988653
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.20 E-value=3.4e-11 Score=105.42 Aligned_cols=79 Identities=29% Similarity=0.491 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcccchhh
Q 004770 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKT 583 (731)
Q Consensus 504 d~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~g~~~~~ 583 (731)
|.++|.+||+.|+++ .++.+++|++.||+.|+||||+||.++|++|++.|.+++...|+++||.+|++++..+.++++
T Consensus 2 d~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTT--SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCC--CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 567999999999976 467789999999999999999999999999999999999999999999999999999887765
Q ss_pred h
Q 004770 584 A 584 (731)
Q Consensus 584 ~ 584 (731)
.
T Consensus 80 ~ 80 (88)
T 3vlf_B 80 S 80 (88)
T ss_dssp -
T ss_pred c
Confidence 4
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.20 E-value=1e-10 Score=153.07 Aligned_cols=173 Identities=18% Similarity=0.280 Sum_probs=113.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHH-HHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHH---------------hcCCeE
Q 004770 364 PPRGVLLVGLPGTGKTLLAKA-VAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK---------------KEAPSI 427 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkA-lA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~---------------~~aP~I 427 (731)
..+++||+||||||||++|+. ++...+.+++.++++... +...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 346899999999999999955 455557888888876542 2234444444331 123579
Q ss_pred EEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-C-------CcEEEEEEcCCCC-----CCCccccCCCcc
Q 004770 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-N-------SAVIVLGATNRSD-----VLDPALRRPGRF 494 (731)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~-------~~VIVIaATN~pd-----~LDpALlRpGRF 494 (731)
|||||||.....+. +.....+.+.+++. ..++.. + .++.+|||||+|. .|+++++| ||
T Consensus 1340 lFiDEinmp~~d~y------g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY------GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA 1410 (2695)
T ss_dssp EEEETTTCSCCCSS------SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE
T ss_pred EEeccccccccccc------CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee
Confidence 99999997543332 12234556677663 333211 1 3589999999994 89999999 88
Q ss_pred ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCC--HHHHH------------------HhCCCCCHHHHHHHHHHHHH
Q 004770 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDID--LGDIA------------------SMTTGFTGADLANLVNEAAL 553 (731)
Q Consensus 495 dr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvd--l~~LA------------------~~t~G~SgadL~~Lv~eAa~ 553 (731)
..+.++.|+.+++..|+..++... +...+++. .+.++ +...-|+.+||.++++-...
T Consensus 1411 -~vi~i~~P~~~~l~~I~~~il~~~-l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1411 -AILYLGYPSGKSLSQIYEIYYKAI-FKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp -EEEECCCCTTTHHHHHHHHHHHHH-TTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 789999999999999999888642 12222221 11111 11235789999988876443
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.16 E-value=7.9e-11 Score=114.25 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=80.1
Q ss_pred CCcccccccCCh-HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhh
Q 004770 327 DTITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (731)
Q Consensus 327 ~~vtf~DV~G~d-evK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~ 401 (731)
...+|+++++.+ +.++.+..+..++.+. ....+.+++|+||||||||+|++++++.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 456888888743 3333333333333321 22346789999999999999999999876 677888888887
Q ss_pred HHHhhccchH-HHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 402 VELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 402 ~~~~vG~~~~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
.+.+...... ....+++. ...|.+|+|||++... .+......+..++.... ..+..+|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~~----------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSER----------LSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSSC----------CCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCCc----------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 7654321110 00122222 2357799999998542 23334455666665542 123466778876
Q ss_pred C
Q 004770 481 S 481 (731)
Q Consensus 481 p 481 (731)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.06 E-value=2.2e-10 Score=125.54 Aligned_cols=210 Identities=19% Similarity=0.276 Sum_probs=125.1
Q ss_pred cccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH---
Q 004770 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (731)
Q Consensus 331 f~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~--- 404 (731)
+++++|.....+++.+.+..+.. ....+||+|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45678888777777766654332 23468999999999999999998875 479999999876432
Q ss_pred --hhccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc--CCCC----C
Q 004770 405 --YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS----N 469 (731)
Q Consensus 405 --~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~----~ 469 (731)
..|... ......|+.|.. ++||||||+.+.... ...|-++|.+-. .... .
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~~------------q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLEA------------QAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHHH------------HHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCHHH------------HHHHHHHHhcCcEEeCCCCceee
Confidence 222111 012235565544 499999999985332 122333333311 1111 1
Q ss_pred CcEEEEEEcCCCCCCCccccCCCccce-------EEEeeCCCHHHH----HHHHHHHHhc----CCCCCcccCC---HHH
Q 004770 470 SAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGR----EAILKVHVSK----KELPLAKDID---LGD 531 (731)
Q Consensus 470 ~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR----~eILk~~l~~----~~l~l~~dvd---l~~ 531 (731)
..+.||+|||.. +. .+.+.|+|.. .+.+..|+..+| ..++++++.+ .+.+. ..++ ++.
T Consensus 271 ~~~rii~at~~~--l~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~-~~~~~~a~~~ 346 (387)
T 1ny5_A 271 VNVRILAATNRN--IK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEV-EGFTKSAQEL 346 (387)
T ss_dssp CCCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCC-CEECHHHHHH
T ss_pred ccEEEEEeCCCC--HH-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCC-CCCCHHHHHH
Confidence 357899999974 11 2222344421 456677776665 3344544432 22221 1222 444
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Q 004770 532 IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (731)
Q Consensus 532 LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (731)
+.....--+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 347 l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 455543335689999999998776 24578888886543
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.04 E-value=3.3e-10 Score=111.55 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=65.4
Q ss_pred CCcccccccCChHh-HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 004770 327 DTITFADVAGVDEA-KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (731)
Q Consensus 327 ~~vtf~DV~G~dev-K~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~ 402 (731)
...+|+++++.+.. ++.+..+..++..... ...|++++|+||||||||+||+++++++ +.+++.+++.++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 35689999987633 3233333333332110 1134789999999999999999999987 6889999998877
Q ss_pred HHhhccc-hHHHHHHHHHHHhcCCeEEEEcccchhh
Q 004770 403 ELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (731)
Q Consensus 403 ~~~vG~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (731)
..+.... ...+..++.... .+.+|+|||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 6543211 111223333333 23599999997753
No 93
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.99 E-value=9e-10 Score=94.83 Aligned_cols=75 Identities=29% Similarity=0.407 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhcccc
Q 004770 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIE 580 (731)
Q Consensus 504 d~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~g~~ 580 (731)
|.++|.+||+.|+++. ++.+++|++.||..|+||||+||.++|++|+..|.+++...|+++||..|+.++.....
T Consensus 2 d~~~R~~Il~~~l~~~--~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKM--NLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTS--CBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 6789999999999764 56688999999999999999999999999999999999999999999999998876543
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.97 E-value=3e-08 Score=104.42 Aligned_cols=187 Identities=17% Similarity=0.198 Sum_probs=115.8
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh------
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF------ 401 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~------ 401 (731)
....+.++|.++..+.|.+ + .. ..++|+||+|+|||+|++.++++++.+++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l---~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-L---RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-T---CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHHHHHHHHH-h---cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 3456788999887666655 3 21 379999999999999999999998777788876543
Q ss_pred -----HHHh---h------------------c-------c-------chHHHHHHHHHHHhc--CCeEEEEcccchhhcc
Q 004770 402 -----VELY---V------------------G-------M-------GASRVRDLFARAKKE--APSIIFIDEIDAVAKS 439 (731)
Q Consensus 402 -----~~~~---v------------------G-------~-------~~~~vr~lF~~A~~~--aP~ILfIDEIDaL~~~ 439 (731)
.... . + . ....+..+++..... .|.+|+|||+|.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 1100 0 0 0 012344455544432 3899999999998642
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCC---------CCccccCCCccceEEEeeCCCHHHHHH
Q 004770 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---------LDPALRRPGRFDRVVMVETPDKIGREA 510 (731)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~---------LDpALlRpGRFdr~I~v~~Pd~~eR~e 510 (731)
... .....+..+.... .++.+|.++..... ....+ .||+...+.+.+.+.++..+
T Consensus 153 ~~~--------~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 153 RGV--------NLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp TTC--------CCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHH
T ss_pred Cch--------hHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHH
Confidence 111 1122333333321 24555555543211 11122 34666789999999999999
Q ss_pred HHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHH
Q 004770 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (731)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~e 550 (731)
+++..+...+.... +...+...+.|+ +.-+..++..
T Consensus 217 ~l~~~~~~~~~~~~---~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 217 FLRRGFQEADIDFK---DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHTCCCC---CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC---cHHHHHHHhCCC-HHHHHHHHHH
Confidence 99987754333322 237788889884 6667666554
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.95 E-value=3.8e-09 Score=118.06 Aligned_cols=212 Identities=19% Similarity=0.141 Sum_probs=123.1
Q ss_pred ccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHH-HHhcCCcEEEeec--hhhHHHhhcc--
Q 004770 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV-AGEAEVPFISCSA--SEFVELYVGM-- 408 (731)
Q Consensus 334 V~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAl-A~elgvpfi~is~--se~~~~~vG~-- 408 (731)
|+|++++|..|.-.+.--. .+ .+..-+|||.|+||| ||+||+++ ++-+....+ .++ +.... ..+.
T Consensus 215 I~G~e~vK~aLll~L~GG~-~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~g-Lt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCV-GK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTD-LTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCC-SS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHH-HSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCc-cc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccC-ceEEEE
Confidence 8999998876654332111 00 223347999999999 99999999 776544332 221 11000 0000
Q ss_pred ---chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc-------CCCCCCcEEEEEEc
Q 004770 409 ---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-------GFDSNSAVIVLGAT 478 (731)
Q Consensus 409 ---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-------g~~~~~~VIVIaAT 478 (731)
+...-...+..|.. .|+|||||+.+..+ +...|+..|+ |..-+.++.||||+
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~~---------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGAPEP---------------HRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTCCHH---------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhCCHH---------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 00000112333433 39999999987432 3344555544 22223568999999
Q ss_pred CCCC-----------CCCccccCCCccceEEE-eeCCCHHHH---------HHHHHH---HHh-cC-CCCCcccCCHHHH
Q 004770 479 NRSD-----------VLDPALRRPGRFDRVVM-VETPDKIGR---------EAILKV---HVS-KK-ELPLAKDIDLGDI 532 (731)
Q Consensus 479 N~pd-----------~LDpALlRpGRFdr~I~-v~~Pd~~eR---------~eILk~---~l~-~~-~l~l~~dvdl~~L 532 (731)
|..+ .|+++++. |||..+. ++.|+.+.. .+.++. +++ .. ...+.+++ .+.|
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea-~~yI 423 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEA-RKRL 423 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHH-HHHH
T ss_pred CcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHH-HHHH
Confidence 9865 78999999 9997654 355654331 112222 222 11 11222221 1111
Q ss_pred H------H-----------hCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHh
Q 004770 533 A------S-----------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (731)
Q Consensus 533 A------~-----------~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi 576 (731)
. + ...|.|++.+..+++-|...|..+++..|+.+|+.+|+.-..
T Consensus 424 ~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 424 EHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 1 0 245789999999999999999999999999999999986543
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.93 E-value=1.1e-07 Score=99.93 Aligned_cols=192 Identities=18% Similarity=0.183 Sum_probs=115.4
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH-----
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV----- 402 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~----- 402 (731)
...-++++|.++..+.|.+.+.. + +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 34456799999988888776642 1 5799999999999999999999986 6666654431
Q ss_pred -------HHhh--------------------ccc----hHHHHHHHHH----HHhcCCeEEEEcccchhhcccCCccccc
Q 004770 403 -------ELYV--------------------GMG----ASRVRDLFAR----AKKEAPSIIFIDEIDAVAKSRDGRFRIV 447 (731)
Q Consensus 403 -------~~~v--------------------G~~----~~~vr~lF~~----A~~~aP~ILfIDEIDaL~~~r~~~~~~~ 447 (731)
..+. +.. ...+.++++. +....|.+|+|||+|.+..... .
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-----~ 146 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-----R 146 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----T
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----c
Confidence 1110 000 0122333322 2223499999999999854100 0
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC---------CCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 004770 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (731)
Q Consensus 448 ~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd---------~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~ 518 (731)
........+..++... .++.+|.++.... .....+ .||+...+.+.+.+.++..++++..+..
T Consensus 147 ~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 147 GGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp TTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 1112223333333321 2455555544321 111222 2466678999999999999999988765
Q ss_pred CCCCCcccCCHHHHHHhCCCCCHHHHHHHHHH
Q 004770 519 KELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (731)
Q Consensus 519 ~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~e 550 (731)
.+..+.++ ....+...+.|+ +.-+..++..
T Consensus 219 ~~~~~~~~-~~~~i~~~tgG~-P~~l~~~~~~ 248 (350)
T 2qen_A 219 VNLDVPEN-EIEEAVELLDGI-PGWLVVFGVE 248 (350)
T ss_dssp TTCCCCHH-HHHHHHHHHTTC-HHHHHHHHHH
T ss_pred cCCCCCHH-HHHHHHHHhCCC-HHHHHHHHHH
Confidence 44443332 466778888884 6666666543
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.87 E-value=7.9e-10 Score=95.26 Aligned_cols=72 Identities=28% Similarity=0.350 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHhccc
Q 004770 506 IGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI 579 (731)
Q Consensus 506 ~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alervi~g~ 579 (731)
++|.+||+.|+++ .++.+++|++.||..|+||||+||.++|++|++.|.+++...|+++||..|++++..+.
T Consensus 1 ~~R~~Il~~~l~~--~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp ---------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcC--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 4789999999975 45677899999999999999999999999999999999999999999999999886553
No 98
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.78 E-value=4.7e-09 Score=114.36 Aligned_cols=195 Identities=18% Similarity=0.290 Sum_probs=113.7
Q ss_pred ccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechhhHH-----H
Q 004770 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFVE-----L 404 (731)
Q Consensus 332 ~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se~~~-----~ 404 (731)
.+++|......++.+.+..+.. ....+|++|++||||+++|+++....+. +|+.++|+.+.+ .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3678888888877776654432 2335999999999999999999887643 399999986532 1
Q ss_pred hhccch-------HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhc--CCCC----CCc
Q 004770 405 YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS----NSA 471 (731)
Q Consensus 405 ~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~----~~~ 471 (731)
..|... ..-...|+.|.. .+||||||+.+....+ ..|-.+|.+-. .... ...
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQRVQ------------AKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCHHHH------------HHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCHHHH------------HHHHHHHHhCCcccCCCCcceeee
Confidence 222211 111234565544 3899999999853322 22233333211 1111 125
Q ss_pred EEEEEEcCCCCCCCccccCCCccce-------EEEeeCCCHHHH----HHHHHHHHhc----CCCC---CcccCCHHHHH
Q 004770 472 VIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGR----EAILKVHVSK----KELP---LAKDIDLGDIA 533 (731)
Q Consensus 472 VIVIaATN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR----~eILk~~l~~----~~l~---l~~dvdl~~LA 533 (731)
+.+|+|||.. +. .+...|+|.. .+.+..|...+| ..++++++.+ .+.+ +.++ .++.|.
T Consensus 264 ~rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~ 339 (368)
T 3dzd_A 264 IRVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE-TKEYLM 339 (368)
T ss_dssp CEEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH-HHHHHH
T ss_pred eEEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHHHH
Confidence 7799999964 22 2223344432 455666666554 4455555533 1211 2222 244555
Q ss_pred HhCCCCCHHHHHHHHHHHHHHH
Q 004770 534 SMTTGFTGADLANLVNEAALLA 555 (731)
Q Consensus 534 ~~t~G~SgadL~~Lv~eAa~~A 555 (731)
.....-+.++|+++++.|+..+
T Consensus 340 ~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 340 KQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp TCCCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC
Confidence 5553336699999999887654
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.77 E-value=6e-09 Score=110.85 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=62.1
Q ss_pred CcccccccCChHh-HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhH
Q 004770 328 TITFADVAGVDEA-KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFV 402 (731)
Q Consensus 328 ~vtf~DV~G~dev-K~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~~ 402 (731)
..+|+++.+.+.. +..+..+..++... ....+.+++|+||||||||+||+++|.++ +.+++.++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689999875532 22233333333321 11135789999999999999999999865 4889999998887
Q ss_pred HHhhccc-hHHHHHHHHHHHhcCCeEEEEcccchhh
Q 004770 403 ELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (731)
Q Consensus 403 ~~~vG~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (731)
..+.... ...+...+.... .+.+|||||++...
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 7554321 111222222222 34599999997653
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.76 E-value=1.4e-09 Score=116.46 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (731)
...+..++|+||||||||+||.++|.+.+ +.|+.+...+.++.+.......+..+++..... + +|||||++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~-~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH-R-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC-S-EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC-C-EEEEecccccccc
Confidence 34445689999999999999999998754 446666323333333333344444555555544 3 9999999998644
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccc
Q 004770 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL 488 (731)
Q Consensus 440 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpAL 488 (731)
..... ......+.+.+++..|.++....++.+|+++| +...|+++
T Consensus 198 ~~~~s---~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNT---TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc---ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 32100 00111244556666655444445678888888 56667665
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.75 E-value=3.3e-09 Score=101.13 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (731)
....++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 45679999999999999999999987 777888888776432 112357799999998753
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.66 E-value=2.3e-08 Score=100.13 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh--------cC-CcEEEeechhhHHHhh----------cc-----chHHHHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE--------AE-VPFISCSASEFVELYV----------GM-----GASRVRDLFAR 419 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e--------lg-vpfi~is~se~~~~~v----------G~-----~~~~vr~lF~~ 419 (731)
.+-..|++|+||||||++|.+.+.. .| .+++.+++.++.-... .. ....+.+++..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3457899999999999999886433 35 7777777766542111 11 11223322211
Q ss_pred HHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEE
Q 004770 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVM 499 (731)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~ 499 (731)
.....+||+|||++.+.+.+.... +. ..++..+.. ..+.++-||.+|+.++.|+.++++ |++.+++
T Consensus 84 -~~~~~~vliIDEAq~l~~~~~~~~-e~---------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~ 149 (199)
T 2r2a_A 84 -PENIGSIVIVDEAQDVWPARSAGS-KI---------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYH 149 (199)
T ss_dssp -GGGTTCEEEETTGGGTSBCCCTTC-CC---------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEE
T ss_pred -cccCceEEEEEChhhhccCccccc-hh---------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEE
Confidence 233467999999999975542211 11 135555553 334567778888889999999887 9999999
Q ss_pred eeCCCHHH
Q 004770 500 VETPDKIG 507 (731)
Q Consensus 500 v~~Pd~~e 507 (731)
+..|....
T Consensus 150 l~~~~~~~ 157 (199)
T 2r2a_A 150 IASNKMGM 157 (199)
T ss_dssp EEECSSCC
T ss_pred EcCcccCc
Confidence 98875443
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.51 E-value=2.2e-06 Score=112.83 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=108.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (731)
..++++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+.... +++++||++.+...-
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~ev---- 713 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKV---- 713 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHH----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHH----
Confidence 457999999999999999999999999999999986433 345566777666553 599999999864321
Q ss_pred cccchHHHHHHHHHHHHhhc---------C--CCCCCcEEEEEEcCC----CCCCCccccCCCccceEEEeeCCCHHHHH
Q 004770 445 RIVSNDEREQTLNQLLTEMD---------G--FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGRE 509 (731)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~emd---------g--~~~~~~VIVIaATN~----pd~LDpALlRpGRFdr~I~v~~Pd~~eR~ 509 (731)
-....+.+..+...+. | +..+..+.|++|.|. ...|+++|.+ || +.+.+..||.+...
T Consensus 714 ----Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 714 ----LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIA 786 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHH
Confidence 0111112222222221 1 122345678888883 4579999988 77 58999999998888
Q ss_pred HHHHHHHhcCCCCCcccC-----CHHHHH-H-----hCCCCCHHHHHHHHHHHHHH
Q 004770 510 AILKVHVSKKELPLAKDI-----DLGDIA-S-----MTTGFTGADLANLVNEAALL 554 (731)
Q Consensus 510 eILk~~l~~~~l~l~~dv-----dl~~LA-~-----~t~G~SgadL~~Lv~eAa~~ 554 (731)
+|+-... +...++.. .+-.++ + ....|.-+.+..++..|...
T Consensus 787 ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 787 EMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 7754322 11111111 011111 1 12236778898888876544
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.49 E-value=6.3e-08 Score=106.05 Aligned_cols=120 Identities=18% Similarity=0.115 Sum_probs=78.2
Q ss_pred hCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhc-
Q 004770 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAK- 438 (731)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~- 438 (731)
++.+.+..++|+||||+|||+|++++++..+..++.+...+-. .. |........+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~----------~~--~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR----------LN--FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT----------HH--HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh----------HH--HHHHHhcchhHHHHHHHHHHHHH
Confidence 4677888999999999999999999999887776654332210 00 1111112345789999998865
Q ss_pred ccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeC
Q 004770 439 SRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (731)
Q Consensus 439 ~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~ 502 (731)
.+... .. . .. .....+...++| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~--~~-~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SG-Q-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CC-S-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--cc-C-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22110 00 1 10 123444555664 34577889999999 79999999987766543
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.43 E-value=3.2e-07 Score=117.39 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=80.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH----HHhhc------------cchHHHHHHHHHHH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----ELYVG------------MGASRVRDLFARAK 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~----~~~vG------------~~~~~vr~lF~~A~ 421 (731)
|..++++++|+||||||||+||.+++.++ |.....++..+.+ ....| ..+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36788999999999999999999998875 4455556554322 12222 23456677777888
Q ss_pred hcCCeEEEEcccchhhcccC--CcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
..+|++|||||++.+.+... +...........+.++++|.+|.++....+++||.+-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 89999999999998876431 1100001112456788888888877766777777554
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.32 E-value=2.8e-06 Score=90.59 Aligned_cols=179 Identities=16% Similarity=0.085 Sum_probs=118.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CC-cEEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcccc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EV-PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEID 434 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gv-pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEID 434 (731)
+.+..+||+||+|+||+..++++++.+ +. ++..+... + ...++++++.+.. ....||+|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 456689999999999999999998865 22 32222111 1 1345556555542 345699999998
Q ss_pred h-hhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC------CCCCccccCCCccceEEEeeCCCHHH
Q 004770 435 A-VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVMVETPDKIG 507 (731)
Q Consensus 435 a-L~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p------d~LDpALlRpGRFdr~I~v~~Pd~~e 507 (731)
. +... ..+.|+..++... ..+++|.+++.+ ..+.+++.+ | ...+.+.+++..+
T Consensus 87 ~kl~~~---------------~~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~s--r-~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 87 NGPNAA---------------INEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALAN--R-SVQVTCQTPEQAQ 146 (343)
T ss_dssp SCCCTT---------------HHHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTT--T-CEEEEECCCCTTH
T ss_pred CCCChH---------------HHHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHh--C-ceEEEeeCCCHHH
Confidence 8 6421 3366777776433 344444444433 345677776 3 3478999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHH
Q 004770 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (731)
Q Consensus 508 R~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r~~~~~It~~d~~~Alerv 575 (731)
..+.++..+...++.++++ .++.|+..+.| +.+++.+.++..+..+ +...||.+++.+.+...
T Consensus 147 l~~~l~~~~~~~g~~i~~~-a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDA-ANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHHTTCEECHH-HHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 9999999998877666554 36677777765 6777777777666553 24579999988876553
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.24 E-value=3.2e-06 Score=112.16 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=91.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEeechhhHHHhhccchHHHHHHHHHHH----------------hcCCeE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELYVGMGASRVRDLFARAK----------------KEAPSI 427 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-gvpfi~is~se~~~~~vG~~~~~vr~lF~~A~----------------~~aP~I 427 (731)
.+++||+||||||||++++.....+ +.+++.++++.-. .+..+...++... ....+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4569999999999998876655444 6677788776432 2333444443210 122369
Q ss_pred EEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCC-------CCcEEEEEEcCCC-----CCCCccccCCCccc
Q 004770 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-------NSAVIVLGATNRS-----DVLDPALRRPGRFD 495 (731)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-------~~~VIVIaATN~p-----d~LDpALlRpGRFd 495 (731)
+||||++.-....- +....-..|.+++..-.-+.. -.++.+|||+|.| ..|+++++| ||-
T Consensus 1378 lFiDDiNmp~~D~y------GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKY------GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEETTTTCCCCCTT------SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEecccCCCCcccc------ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 99999986432221 122344566666654211111 1467899999987 469999999 887
Q ss_pred eEEEeeCCCHHHHHHHHHHHHh
Q 004770 496 RVVMVETPDKIGREAILKVHVS 517 (731)
Q Consensus 496 r~I~v~~Pd~~eR~eILk~~l~ 517 (731)
.+.++.|+.++...|+..++.
T Consensus 1450 -vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHH
Confidence 699999999999999876654
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.14 E-value=1.1e-06 Score=88.71 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi 394 (731)
.+++||+||||||||++|.++|+.+.-.++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 467999999999999999999999865443
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.01 E-value=1.3e-05 Score=78.37 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi 394 (731)
.+.|+||+|+|||||++.+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998875543
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.85 E-value=1.9e-05 Score=82.53 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgv 391 (731)
.++++|+||||||||++|+++|+....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457999999999999999999997654
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.85 E-value=2.4e-05 Score=76.99 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=32.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
|.....-++|+||||+|||+|++.+|...+.+.++++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566677999999999999999999986677777777654
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.81 E-value=0.0001 Score=72.63 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
|......++|+||||+|||+|++.++..+ +.+++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34556679999999999999999999654 455555553
No 113
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.80 E-value=8.3e-05 Score=99.00 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (731)
..|..+.||+|||||.++|.+|+.+|.+++.++|++-.+ ...+..+|.-+... -+..++|||+.+...--
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vL--- 673 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERIL--- 673 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHH---
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHH---
Confidence 346789999999999999999999999999999986443 23445566655543 34889999998742210
Q ss_pred cccchHHHHHHHHHHHHh-----hc-C--CCCCCcEEEEEEcCC----CCCCCccccCCCccceEEEeeCCCHHHHHHHH
Q 004770 445 RIVSNDEREQTLNQLLTE-----MD-G--FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGREAIL 512 (731)
Q Consensus 445 ~~~~~~e~~~~Ln~LL~e-----md-g--~~~~~~VIVIaATN~----pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL 512 (731)
.........+...+... ++ | +.-+..+.|++|.|. ...|+++|.. || +.|.+..||.+...+|+
T Consensus 674 -Svv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 674 -SAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp -HHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHH
Confidence 00001111111111111 11 1 122345678888883 3689999998 77 46999999998887765
No 114
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.78 E-value=0.00013 Score=72.99 Aligned_cols=130 Identities=22% Similarity=0.210 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHH--Hh--cCCcEEEeechhhHHH------hhcc----------------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVA--GE--AEVPFISCSASEFVEL------YVGM---------------------- 408 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA--~e--lgvpfi~is~se~~~~------~vG~---------------------- 408 (731)
|.....-+.|.||+|+|||+|++.++ .. .+...+.++..+.... ..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34556679999999999999999998 32 2444444443221110 0000
Q ss_pred --------------chHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEE
Q 004770 409 --------------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (731)
Q Consensus 409 --------------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 474 (731)
.......+........|.+|+|||.-++..... ......+.+..++..+.. .++.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~------d~~~~~~~l~~l~~~l~~----~g~ti 175 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------EERKIREVLLKLNTILLE----MGVTT 175 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS------SGGGHHHHHHHHHHHHHH----HCCEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC------CHHHHHHHHHHHHHHHHH----CCCeE
Confidence 011122233333456899999999987753211 122334456677766641 34566
Q ss_pred EEEcCCCCCCC-----ccccCCCcc-ceEEEeeC
Q 004770 475 LGATNRSDVLD-----PALRRPGRF-DRVVMVET 502 (731)
Q Consensus 475 IaATN~pd~LD-----pALlRpGRF-dr~I~v~~ 502 (731)
|.+|+..+... +.+.. -. |+++.+..
T Consensus 176 i~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 176 ILTTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp EEEECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred EEEECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 66776654441 22222 34 77777754
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=6e-05 Score=75.29 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=50.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh--c-------CCcEEEeechhh------HHH--hhcc---------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE--A-------EVPFISCSASEF------VEL--YVGM--------------- 408 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e--l-------gvpfi~is~se~------~~~--~vG~--------------- 408 (731)
|.....-++|+||||+|||+|++.+|.. . +...++++..+. ... ..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4556677999999999999999999985 2 456777766541 110 0111
Q ss_pred chHH----HHHHHHHHHhcCCeEEEEcccchhhc
Q 004770 409 GASR----VRDLFARAKKEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 409 ~~~~----vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (731)
.... +..+.+.+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1111 22233344456799999999988753
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.72 E-value=8e-05 Score=71.06 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=35.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
|+.|+|+|+||+||||++++++..++.+++.++...+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 4679999999999999999999999999998887766543
No 117
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.66 E-value=7.2e-05 Score=79.64 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhh--HH----H--hhcc---------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF--VE----L--YVGM--------------- 408 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se~--~~----~--~vG~--------------- 408 (731)
|.+...-++|+||||+|||+||..+|..+ +.+.++++...- .+ . -.|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666779999999999999999999875 456777776542 11 0 0111
Q ss_pred chH----HHHHHHHHHHh-cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEE
Q 004770 409 GAS----RVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (731)
Q Consensus 409 ~~~----~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 477 (731)
... .+..+....+. ..+.+|+||.+..+......+ .+...++.+.+.+++..+..+....++.||.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG--RENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT--TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 011 12233333444 678999999999987432110 01112222344555555443332334455554
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.63 E-value=0.0001 Score=80.25 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=51.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH----hhcc-----------chHHHHHHHHHH-H
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGM-----------GASRVRDLFARA-K 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~----~vG~-----------~~~~vr~lF~~A-~ 421 (731)
|......++|+||||+|||+||..+|.++ +.++++++...-.+. ..|. ....+.+.++.. +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566779999999999999999998764 567777776532211 1111 112223333322 3
Q ss_pred hcCCeEEEEcccchhhc
Q 004770 422 KEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (731)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45688999999999874
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.58 E-value=6.8e-05 Score=81.08 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=49.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----Hhhcc-----------chHHHHHHHH-HHH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGM-----------GASRVRDLFA-RAK 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~----~~vG~-----------~~~~vr~lF~-~A~ 421 (731)
|.....-++|+||||+|||+||..++..+ +.+.++++...-.+ ...|. ....+.++.. .++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566679999999999999999998754 55666666543211 11121 1111222222 233
Q ss_pred hcCCeEEEEcccchhhc
Q 004770 422 KEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (731)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999873
No 120
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.57 E-value=8.7e-05 Score=80.60 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=50.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----Hhhccc--------hHHHHHHHHH----HH
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGMG--------ASRVRDLFAR----AK 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~----~~vG~~--------~~~vr~lF~~----A~ 421 (731)
|..+..-++|+||||+|||+|+..+|..+ +.++++++..+... .-.|.. ...+.+++.. .+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34555678999999999999999998874 56777777654221 111110 1112222222 23
Q ss_pred hcCCeEEEEcccchhhc
Q 004770 422 KEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (731)
...|.+++||.+..+..
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46788999999998874
No 121
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.55 E-value=0.0024 Score=72.57 Aligned_cols=175 Identities=17% Similarity=0.180 Sum_probs=97.2
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeech
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS 399 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~s 399 (731)
.....++|.+...++|.+.+... ...++-++|+||+|+|||+||+.++... ++-++.++..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34567999999888877765321 1234568999999999999999997532 2233344332
Q ss_pred h---hHHHh------hc----------cchHHHHHHHHHHHh--cCCeEEEEcccchhhcccCCcccccchHHHHHHHHH
Q 004770 400 E---FVELY------VG----------MGASRVRDLFARAKK--EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (731)
Q Consensus 400 e---~~~~~------vG----------~~~~~vr~lF~~A~~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (731)
+ +...+ .+ .....+...+..... ..|++|+||+++...
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--------------------- 249 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------------------- 249 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------------------
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------------------
Confidence 1 11111 11 011222233332222 268999999997421
Q ss_pred HHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEe---eCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHh
Q 004770 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV---ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (731)
Q Consensus 459 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v---~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (731)
.+.. +. .+..||.||........ .. +..+.+ +..+.++-.++|..++... .. ........|++.
T Consensus 250 ~l~~---l~--~~~~ilvTsR~~~~~~~--~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~-~~~~~~~~i~~~ 316 (591)
T 1z6t_A 250 VLKA---FD--SQCQILLTTRDKSVTDS--VM----GPKYVVPVESSLGKEKGLEILSLFVNMK-KA-DLPEQAHSIIKE 316 (591)
T ss_dssp HHHT---TC--SSCEEEEEESCGGGGTT--CC----SCEEEEECCSSCCHHHHHHHHHHHHTSC-GG-GSCTHHHHHHHH
T ss_pred HHHH---hc--CCCeEEEECCCcHHHHh--cC----CCceEeecCCCCCHHHHHHHHHHHhCCC-cc-cccHHHHHHHHH
Confidence 1222 22 34456667765432211 11 223444 3678888899998887531 11 112246788999
Q ss_pred CCCCCHHHHHHHH
Q 004770 536 TTGFTGADLANLV 548 (731)
Q Consensus 536 t~G~SgadL~~Lv 548 (731)
+.|. +--|..+.
T Consensus 317 ~~G~-PLal~~~a 328 (591)
T 1z6t_A 317 CKGS-PLVVSLIG 328 (591)
T ss_dssp HTTC-HHHHHHHH
T ss_pred hCCC-cHHHHHHH
Confidence 9885 55555443
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.50 E-value=0.00018 Score=71.00 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
|.....-+.|+||+|+|||+|++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556669999999999999999999854
No 123
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.49 E-value=0.00016 Score=77.78 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=50.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhh--HH----H--hhccc--------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF--VE----L--YVGMG-------------- 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se~--~~----~--~vG~~-------------- 409 (731)
|.+...-++|+||||+|||+||..+|..+ +.+.++++...- .+ . ..|..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45555668999999999999999999863 456777766542 11 0 01110
Q ss_pred -hHH----HHHHHHHHHh--cCCeEEEEcccchhhcc
Q 004770 410 -ASR----VRDLFARAKK--EAPSIIFIDEIDAVAKS 439 (731)
Q Consensus 410 -~~~----vr~lF~~A~~--~aP~ILfIDEIDaL~~~ 439 (731)
... +..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 111 1122233444 67889999999998743
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.47 E-value=9e-05 Score=95.21 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=75.9
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh----hc--------cchHHHHHHHHHHHh---
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----VG--------MGASRVRDLFARAKK--- 422 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~----vG--------~~~~~vr~lF~~A~~--- 422 (731)
|..++..++|+|+||+|||+||..+|.++ +.++++++..+..+.. .| ..+..+.+++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46778889999999999999999999876 4578999876544432 22 112234555555544
Q ss_pred -cCCeEEEEcccchhhc-ccC-CcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEc
Q 004770 423 -EAPSIIFIDEIDAVAK-SRD-GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (731)
Q Consensus 423 -~aP~ILfIDEIDaL~~-~r~-~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 478 (731)
..|++||||.++.+.. ... +...........+.+++++..|..+....+|.||++.
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~ 866 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 866 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 6799999999999975 210 0000001112233467777777766555666666665
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.45 E-value=0.0037 Score=76.42 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=100.7
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---C--C--cEEEeechh-
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---E--V--PFISCSASE- 400 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g--v--pfi~is~se- 400 (731)
....+++|.++..++|.+.+... ...++-+.|+|+.|+|||+||+.+++.. . . .++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34567999999888877765321 1234568899999999999999998752 1 1 223333222
Q ss_pred ----hHHH-------hh---------ccchHHHHHHHHHHHhcC--CeEEEEcccchhhcccCCcccccchHHHHHHHHH
Q 004770 401 ----FVEL-------YV---------GMGASRVRDLFARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (731)
Q Consensus 401 ----~~~~-------~v---------G~~~~~vr~lF~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 458 (731)
.... .. ......+.+.+....... +.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 1110 00 011223333344333333 7899999997531
Q ss_pred HHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeC-CCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCC
Q 004770 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET-PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (731)
Q Consensus 459 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~-Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (731)
.++.+. .+..||.||..+....... .-...+.++. .+.++-.++|..+..... + .......+|++.+.
T Consensus 250 ---~~~~~~--~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~-~~~~~~~~i~~~~~ 318 (1249)
T 3sfz_A 250 ---VLKAFD--NQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKK-E-DLPAEAHSIIKECK 318 (1249)
T ss_dssp ---HHTTTC--SSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCS-T-TCCTHHHHHHHHTT
T ss_pred ---HHHhhc--CCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCCh-h-hCcHHHHHHHHHhC
Confidence 111222 3346667777654332211 1234677775 888888899988774321 1 11123677899998
Q ss_pred CCCHHHHHHH
Q 004770 538 GFTGADLANL 547 (731)
Q Consensus 538 G~SgadL~~L 547 (731)
|. |-.|+.+
T Consensus 319 gl-PLal~~~ 327 (1249)
T 3sfz_A 319 GS-PLVVSLI 327 (1249)
T ss_dssp TC-HHHHHHH
T ss_pred CC-HHHHHHH
Confidence 85 5445433
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.00063 Score=67.85 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=29.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
|.....-++|+||||+|||+|+..+|... +.+.++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45566779999999999999998887643 5666666544
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.00019 Score=77.91 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----Hhhcc-----------chHHHHHHHHHH-H
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGM-----------GASRVRDLFARA-K 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~----~~vG~-----------~~~~vr~lF~~A-~ 421 (731)
|......++|+||||+|||+||..+|.++ +.++++++...-.+ .-.|. ....+.++++.. +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45566779999999999999999998764 66777777632211 11111 122233333322 3
Q ss_pred hcCCeEEEEcccchhhc
Q 004770 422 KEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (731)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46788999999999864
No 128
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.37 E-value=0.001 Score=74.22 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCC--------CCCcEEEEEEc----
Q 004770 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT---- 478 (731)
Q Consensus 411 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaAT---- 478 (731)
...++..+.|..+ +|+|+||||+++.+.++ ...+...+.+...||..|++.. ..++|++|||.
T Consensus 239 ~~~~~ai~~ae~~--~il~~DEidki~~~~~~---~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 239 ELKQKAIDAVEQN--GIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHH--CEEEEETGGGGSCCSSC---SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHhccC--CeeeHHHHHHHhhccCC---CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 3345555555322 39999999999866432 1233334456678888888632 24678999887
Q ss_pred CCCCCCCccccCCCccceEEEeeCCCHHHHHHHHH
Q 004770 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (731)
Q Consensus 479 N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk 513 (731)
+.|..+.|.|+. ||+.++.++.++.++..+|+.
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 234445578886 999999999999999999983
No 129
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00049 Score=72.18 Aligned_cols=60 Identities=28% Similarity=0.400 Sum_probs=42.0
Q ss_pred hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 338 devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
++..+.+.+++..+... ......|..++|.||||+||||++++++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45555566665553321 1233457779999999999999999999998555677776555
No 130
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.35 E-value=0.00056 Score=76.19 Aligned_cols=54 Identities=24% Similarity=0.426 Sum_probs=35.6
Q ss_pred ccCCCcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 324 ~~~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+...+.+|+++ .++.++.+..++.++... ...++|.||||||||+++.+++..+
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCccccC--CHHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34456778776 345555555655554432 1279999999999999999998865
No 131
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.33 E-value=0.00011 Score=70.57 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
.++.|+|+||||+|||++++.+|..++.+++.. .++....
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~ 43 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKR 43 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHH
Confidence 356799999999999999999999999998754 4444433
No 132
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.32 E-value=0.00044 Score=70.75 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=42.5
Q ss_pred hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 338 devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
++.+..+++++..+.... .....|..++|.||||+||||+++.++..++.+++.++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344455555554433221 134567789999999999999999999999877777777665
No 133
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.31 E-value=0.002 Score=73.35 Aligned_cols=170 Identities=11% Similarity=0.105 Sum_probs=94.0
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHH----hcCC-----cEEEeech---hhH
Q 004770 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG----EAEV-----PFISCSAS---EFV 402 (731)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~----elgv-----pfi~is~s---e~~ 402 (731)
+|.++.+++|.+.+..- +...++.|.|+|++|+|||+||+.+++ ...- -++.++.. +..
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999888887766321 112346788999999999999999996 2322 23333332 111
Q ss_pred H---Hh---hccc-------------hHHHHHHHHHHHhcC-CeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHh
Q 004770 403 E---LY---VGMG-------------ASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (731)
Q Consensus 403 ~---~~---vG~~-------------~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 462 (731)
. .. .+.. ...+...+....... +++|+||+++... +. . +..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~-~~~ 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--R-WAQ 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--H-HHH
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--c-ccc
Confidence 1 10 1110 112334444444454 8899999997631 11 1 111
Q ss_pred hcCCCCCCcEEEEEEcCCCCCCCccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccC--CHHHHHHhCCCCC
Q 004770 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI--DLGDIASMTTGFT 540 (731)
Q Consensus 463 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dv--dl~~LA~~t~G~S 540 (731)
. .+..||.||....... .. +..+..+.++..+.++-.++|..+.... +..++. ....|++.+.|.
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~~I~~~c~Gl- 329 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPM--PVGEKEEDVLNKTIELSSGN- 329 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCC--C--CHHHHHHHHHHHHHTTC-
T ss_pred c------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhCCC-
Confidence 1 3345666776532211 11 1124578999999999999998875322 110111 245567777774
Q ss_pred HHHHH
Q 004770 541 GADLA 545 (731)
Q Consensus 541 gadL~ 545 (731)
|-.|.
T Consensus 330 PLAl~ 334 (549)
T 2a5y_B 330 PATLM 334 (549)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 44444
No 134
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.29 E-value=0.00031 Score=77.39 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=62.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhhHH--------Hhhccc--------------
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEFVE--------LYVGMG-------------- 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------gvpfi~is~se~~~--------~~vG~~-------------- 409 (731)
|.....-++|+||||+|||+|++.+|-.. +...++++..+... .-+|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 55666779999999999999999776432 23467776544100 011110
Q ss_pred -h----HHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcC
Q 004770 410 -A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (731)
Q Consensus 410 -~----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 479 (731)
. ..+..+...+....|.+|+||++-.+....-.+ .+.-.++.+.+.+++..+..+....++.||.++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg--~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG--RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 1 112222333344679999999998876432110 0112233344444444444333233455655554
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.28 E-value=0.00024 Score=76.08 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=46.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhHH----Hhhcc-----------chHHH-HHHHHHH---Hh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE----LYVGM-----------GASRV-RDLFARA---KK 422 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el-----gvpfi~is~se~~~----~~vG~-----------~~~~v-r~lF~~A---~~ 422 (731)
-++|+||||+|||+|+-.++.++ +..+++++..+-.. .-.|. ....+ .++.+.+ +.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 57899999999999988776553 56777887654221 11111 11122 2222222 45
Q ss_pred cCCeEEEEcccchhhc
Q 004770 423 EAPSIIFIDEIDAVAK 438 (731)
Q Consensus 423 ~aP~ILfIDEIDaL~~ 438 (731)
.+|.+|+||-|.++.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 6799999999999974
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.28 E-value=0.0011 Score=74.03 Aligned_cols=174 Identities=15% Similarity=0.197 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-------Hh------------hc-cchHHHHHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY------------VG-MGASRVRDLFARA 420 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~-------~~------------vG-~~~~~vr~lF~~A 420 (731)
.|.-++++|++|+||||++..+|..+ |..+..+++..+.. .+ .+ .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998754 55665555442211 00 01 1223456777778
Q ss_pred HhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCc--cccCCCccceEE
Q 004770 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP--ALRRPGRFDRVV 498 (731)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDp--ALlRpGRFdr~I 498 (731)
+...+.+|+||..-.+. .+...-..+..+..... +..-++|+-++...+.++. ++.....++ -+
T Consensus 179 ~~~~~DvVIIDTaGrl~----------~d~~lm~el~~i~~~~~---pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK----------EDKALIEEMKQISNVIH---PHEVILVIDGTIGQQAYNQALAFKEATPIG-SI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSS----------CCHHHHHHHHHHHHHHC---CSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EE
T ss_pred HhCCCCEEEEECCCccc----------chHHHHHHHHHHHHhhc---CceEEEEEeCCCchhHHHHHHHHHhhCCCe-EE
Confidence 77777899999873321 12222222333333332 3333444444432221111 111111122 24
Q ss_pred EeeCCCHHHHHHHHHHHHhcCCCCC-----------cccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 004770 499 MVETPDKIGREAILKVHVSKKELPL-----------AKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (731)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~l~l-----------~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~ 553 (731)
.+...|...+...+.......+.|+ -...+.+.++.+.-|+ +|+..|++.|..
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~ 308 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKE 308 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHH
Confidence 4444444333322222222223332 1223567788777663 688888877643
No 137
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.25 E-value=0.00038 Score=73.65 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
|.+...-++|+||||+|||+||..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455667999999999999999999875
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00017 Score=70.84 Aligned_cols=40 Identities=38% Similarity=0.546 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
.+++.++|+||||+||||+++++|+.++.+++.. .++...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~--d~~~~~ 62 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL--DWYIEE 62 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH--HHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc--hHHHHH
Confidence 4556799999999999999999999999998654 444433
No 139
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.0012 Score=65.86 Aligned_cols=39 Identities=31% Similarity=0.278 Sum_probs=29.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e----lgvpfi~is~s 399 (731)
|..+..-++|+|+||+|||+||..+|.+ .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4556667999999999999999887643 36677777643
No 140
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.22 E-value=0.00014 Score=71.27 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEe
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISC 396 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---gvpfi~i 396 (731)
.-++++||||+|||+++..++..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 458899999999999987666543 5555444
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.22 E-value=0.00023 Score=68.54 Aligned_cols=34 Identities=35% Similarity=0.632 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
...|.-|+|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456779999999999999999999999988765
No 142
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.22 E-value=0.00053 Score=73.97 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechh
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE 400 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------vpfi~is~se 400 (731)
|.+...-+.|+||||+|||+|++.++.... -..++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 455666799999999999999999998762 3556776543
No 143
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.18 E-value=0.00022 Score=90.60 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----Hhhcc--------chHHHHHHHHHHH----
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGM--------GASRVRDLFARAK---- 421 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~----~~vG~--------~~~~vr~lF~~A~---- 421 (731)
|..++..++|+||||+|||+||..+|.++ +.++++++..+-.+ ...|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46778889999999999999999998865 55788877654332 22221 1123344555443
Q ss_pred hcCCeEEEEcccchhhc
Q 004770 422 KEAPSIIFIDEIDAVAK 438 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (731)
...|++|+||+++.+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999873
No 144
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.14 E-value=0.00067 Score=64.26 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
+..+.|+||||+||||+++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4569999999999999999999999986653
No 145
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=0.00036 Score=67.26 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
...+..+.|.||||+||||+++.+++..+.+.+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4456679999999999999999999998888888877655
No 146
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.12 E-value=0.0058 Score=62.28 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=86.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech--------hhHHHhh----------cc--chHHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS--------EFVELYV----------GM--GASRVRDLFARAKK 422 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s--------e~~~~~v----------G~--~~~~vr~lF~~A~~ 422 (731)
..+++.|+||+|||+++-.+|..+ |..++.+... .+..... +. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 459999999999999999998764 6665544442 1211100 00 1123333322
Q ss_pred cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC------------------CCCC
Q 004770 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR------------------SDVL 484 (731)
Q Consensus 423 ~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~------------------pd~L 484 (731)
..|.+++|||+-+...... .+...-+.+..++ + .++=|++|+|. .+.+
T Consensus 83 ~~pdlvIVDElG~~~~~~~------r~~~~~qDV~~~l---~-----sgidVitT~Nlqh~esl~d~v~~itg~~v~e~v 148 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGS------RHTKRWQDIQELL---A-----AGIDVYTTVNVQHLESLNDQVRGITGVQVRETL 148 (228)
T ss_dssp HCCSEEEESCTTCBCCTTC------SSSBHHHHHHHHH---H-----TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCB
T ss_pred cCCCEEEEeCCCCCCcccc------hhHHHHHHHHHHH---c-----CCCCEEEEccccccccHHHHHHHHcCCCcCCcC
Confidence 4688999999865421111 1111222222222 1 34557777762 1455
Q ss_pred CccccCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 004770 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (731)
Q Consensus 485 DpALlRpGRFdr~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgadL~~Lv~eAa~~A~r 557 (731)
+..++. +-|.++.++.|..+ +++.+...+ + ..++..-..+. .-|+...|..|-+-|...++.
T Consensus 149 pd~~~~--~a~~v~lvD~~p~~----l~~rl~~g~-v-y~~~~~~~a~~---~~f~~~nl~~lrelal~~~a~ 210 (228)
T 2r8r_A 149 PDWVLQ--EAFDLVLIDLPPRE----LLERLRDGK-V-YVPEQARAAID---AFFTQTNLTALREMAMQTAAA 210 (228)
T ss_dssp CHHHHH--TCSEEEEBCCCHHH----HHHHHHTTC-C-CCTTCCHHHHH---HHCCHHHHHHHHHHHHHHHHT
T ss_pred ccHHHh--hCCeEEEecCCHHH----HHHHHHCCC-c-cChhHHHHHHH---hhhchhhHHHHHHHHHHHHHH
Confidence 666655 55777778887655 333433332 2 12222122222 237788887776666665543
No 147
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.09 E-value=0.00025 Score=68.14 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=30.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..|+|+|+||+|||++|+.+|..++.+++. ..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~ 38 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIE 38 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHH
Confidence 359999999999999999999999999865 444443
No 148
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.04 E-value=0.00068 Score=70.10 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.....-++|+||||+|||+|++.++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 445567999999999999999999864
No 149
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.03 E-value=0.00038 Score=65.53 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
-|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999999887654
No 150
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.02 E-value=0.00036 Score=66.94 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
.++.|+|+|+||+|||+++++++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 456799999999999999999999999888754
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.00 E-value=0.00037 Score=67.53 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh-cCCcEEEe
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE-AEVPFISC 396 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e-lgvpfi~i 396 (731)
.+..++|+|+||+|||++++.+|.. +|.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3556999999999999999999999 78777653
No 152
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.99 E-value=0.00041 Score=66.29 Aligned_cols=29 Identities=31% Similarity=0.733 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
.++|.||||+|||++++++|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999988865
No 153
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.99 E-value=0.00051 Score=74.47 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=44.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeec-hhhHH---------HhhccchHHHHHHHHHHHhcCCeEEEEcc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~-se~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (731)
.++|+||+|+|||||.+++++.. +..++.+.- .++.. ..++.....+.+.+..|....|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 58899999999999999998865 233333211 11100 00111123355678888889999999999
Q ss_pred cc
Q 004770 433 ID 434 (731)
Q Consensus 433 ID 434 (731)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 83
No 154
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.98 E-value=0.00047 Score=67.40 Aligned_cols=35 Identities=37% Similarity=0.475 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
...|..|+|+|+||+||||+|+.++..++.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34566799999999999999999999999887654
No 155
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.97 E-value=0.0047 Score=70.84 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=54.3
Q ss_pred eEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC--CCCccccCCCccceEEEeeCC
Q 004770 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETP 503 (731)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~v~~P 503 (731)
.+|+|||++.+.... ..+....+.++..+ ....+|.+|.+|.+|. .|+..++. -|...|.+...
T Consensus 345 ivvVIDE~~~L~~~~--------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT--------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhh--------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 589999999886432 12334445555554 3357899999999997 78888776 67888999999
Q ss_pred CHHHHHHHHH
Q 004770 504 DKIGREAILK 513 (731)
Q Consensus 504 d~~eR~eILk 513 (731)
+..+...||.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9888877764
No 156
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.00048 Score=70.01 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=43.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh-------hHHHhhcc-----chHHHHHHHHHHHh----cCCe
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE-------FVELYVGM-----GASRVRDLFARAKK----EAPS 426 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se-------~~~~~vG~-----~~~~vr~lF~~A~~----~aP~ 426 (731)
.-++++||+|+|||+++..++.++ +..++.++... +.+. .|. ......++++.+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 457788999999999998887765 55666553221 1110 111 01122355665554 3478
Q ss_pred EEEEcccchh
Q 004770 427 IIFIDEIDAV 436 (731)
Q Consensus 427 ILfIDEIDaL 436 (731)
+|+|||++.+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999865
No 157
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.95 E-value=0.0012 Score=67.92 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE 403 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~se~~~ 403 (731)
+.-|+|+|+||+|||++|+.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 456999999999999999999997 788888777666553
No 158
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.93 E-value=0.00047 Score=65.32 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
..++|.|+||+|||++++.+|..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998754
No 159
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.92 E-value=0.0006 Score=65.25 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
..++.|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3566799999999999999999999999776643
No 160
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.90 E-value=0.0013 Score=73.16 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeec
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~ 398 (731)
|..+..-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56667779999999999999999998753 567777764
No 161
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.90 E-value=0.00047 Score=65.35 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH-hcCCcEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAG-EAEVPFI 394 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~-elgvpfi 394 (731)
|.-|+|.|+||+||||+|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 55689999999999999999999 5554443
No 162
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.90 E-value=0.00097 Score=76.72 Aligned_cols=97 Identities=28% Similarity=0.422 Sum_probs=55.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH----hhccchHHHHHHHHHH---------HhcCCeEEE
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGMGASRVRDLFARA---------KKEAPSIIF 429 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~----~vG~~~~~vr~lF~~A---------~~~aP~ILf 429 (731)
..++|.||||||||+++++++..+ +.+++.+..+.-... ..+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 569999999999999999998753 666665543322111 1122222333333111 011346999
Q ss_pred EcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
|||+..+. ...+..|+..+. ....+++++-.+.
T Consensus 285 IDEasml~---------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG---------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC---------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EcCccCCC---------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 99997663 124455555443 3456777765543
No 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00057 Score=65.51 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
|.-|+|.|+||+||||+|+.++..++.+++ +..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~~ 39 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELLR 39 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHHH
Confidence 556999999999999999999999998765 4445543
No 164
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.88 E-value=0.00054 Score=66.05 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.+..|+|.|+||+||||+++.+|..++.+++.. .++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~--d~~~~ 45 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST--GDLLR 45 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH--HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH--HHHHH
Confidence 456799999999999999999999999887654 44443
No 165
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.88 E-value=0.0046 Score=70.17 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=52.8
Q ss_pred CCe-EEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCC--CCCccccCCCccceEEEe
Q 004770 424 APS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMV 500 (731)
Q Consensus 424 aP~-ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~v 500 (731)
.|. +|+|||+..+.... ..+....+..+...- ...++.+|.+|.+|. .++..++. -|...|.+
T Consensus 296 lP~ivlvIDE~~~ll~~~--------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV--------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp CCEEEEEEETHHHHHHHH--------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred CCcEEEEEeCHHHHHhhh--------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 354 89999998875321 123334444444432 245788999999986 68877765 67888999
Q ss_pred eCCCHHHHHHHHHH
Q 004770 501 ETPDKIGREAILKV 514 (731)
Q Consensus 501 ~~Pd~~eR~eILk~ 514 (731)
...+..+...|+..
T Consensus 362 rv~s~~dsr~ilg~ 375 (512)
T 2ius_A 362 TVSSKIDSRTILDQ 375 (512)
T ss_dssp CCSSHHHHHHHHSS
T ss_pred EcCCHHHHHHhcCC
Confidence 99999988877643
No 166
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.86 E-value=0.00066 Score=66.40 Aligned_cols=33 Identities=30% Similarity=0.643 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
.++-|+|.|+||+||||+|+.+++.++.+++..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 356799999999999999999999999887653
No 167
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.84 E-value=0.0014 Score=68.12 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=29.5
Q ss_pred hCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEee
Q 004770 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCS 397 (731)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is 397 (731)
.+..+..-++|.||||+|||+|++.+|..+ |.+++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 355666779999999999999999998864 44565554
No 168
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.83 E-value=0.00055 Score=63.99 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
-|+|+||||+||||+|+.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8889887664
No 169
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.82 E-value=0.0008 Score=66.81 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.+..|+|.|+||+||||+++.+|..++.+++. ..+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 40 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA--TGDMLR 40 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe--hhHHHH
Confidence 45679999999999999999999999987655 444443
No 170
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.80 E-value=0.00082 Score=63.55 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=27.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
+.|+|.|+||+|||++++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 458999999999999999999999988765
No 171
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.80 E-value=0.00065 Score=67.90 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..+..|+|.|+||+||||+++.+|.+++.+++.. +++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~--d~~~~ 43 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS--GDLLR 43 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH--HHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec--hHHHH
Confidence 3456799999999999999999999999877653 44443
No 172
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.80 E-value=0.002 Score=71.48 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~s 399 (731)
|..+..-++|.|+||+|||+||..+|..+ +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56666779999999999999999987653 5677777653
No 173
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.79 E-value=0.00067 Score=65.18 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAV 385 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAl 385 (731)
..+.-+.|+||+|+|||||++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 34556889999999999999953
No 174
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.78 E-value=0.00073 Score=69.34 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~ 398 (731)
-++|.||||+|||+||+++|++++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887654
No 175
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.78 E-value=0.0054 Score=62.13 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s 399 (731)
.++++||+|+|||.++.+++..++.+.+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999999887777666544
No 176
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.77 E-value=0.00068 Score=65.52 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+.-|+|.|+||+||||+|+.++..++.+++. ..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS--TGELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc--HHHHHH
Confidence 5679999999999999999999999976654 444443
No 177
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.76 E-value=0.00067 Score=64.74 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi 394 (731)
|.-|+|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999999987
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.74 E-value=0.0011 Score=63.44 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se 400 (731)
..+..+.|+|++|+||||+++.+++.+ |.+++.++...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 345668899999999999999999987 99998887543
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.73 E-value=0.00074 Score=64.73 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
+..++|.|+||+||||+++.+|+.++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3468999999999999999999999877654
No 180
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.71 E-value=0.00086 Score=65.41 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.+.-|+|.|+||+||||+++.++.+++.+++.. +++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~--d~~~~ 51 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA--GDLLR 51 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH--HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH--HHHHH
Confidence 455689999999999999999999999876654 44443
No 181
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.70 E-value=0.0035 Score=66.54 Aligned_cols=73 Identities=26% Similarity=0.401 Sum_probs=46.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------HHh---hc---------cch-HHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG---------MGA-SRVRDLFA 418 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~-------~~~---vG---------~~~-~~vr~lF~ 418 (731)
...|.-++|+||+|+||||++..+|..+ +..+..+.+..+. ..| .+ ... ....+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3567779999999999999999999865 4455544443221 111 00 111 12234556
Q ss_pred HHHhcCCeEEEEcccc
Q 004770 419 RAKKEAPSIIFIDEID 434 (731)
Q Consensus 419 ~A~~~aP~ILfIDEID 434 (731)
.+....|.+|+||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 6666788899999874
No 182
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.70 E-value=0.00088 Score=64.07 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFIS 395 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg-----vpfi~ 395 (731)
+.-++|.||||+||||+++.++..++ .+++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 35699999999999999999999887 55553
No 183
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.69 E-value=0.00085 Score=66.21 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
.|+|.||||+||||+|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999998887654
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.68 E-value=0.00092 Score=67.61 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
.+.|+.|+|.||||+||+|.|+.||..++++. ++..+++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR~ 66 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLRA 66 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHHH
Confidence 45677899999999999999999999998765 455666543
No 185
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.67 E-value=0.00086 Score=68.27 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
..|..|+|.||||+||||+|+.++.+++.+++. .+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is--~~~~~r 65 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS--TGDLLR 65 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe--cHHHHH
Confidence 356779999999999999999999999877654 444444
No 186
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.67 E-value=0.0012 Score=66.27 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.+..|+|.|+||+||||+|+.||.+++++++. ..+++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 52 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDMLR 52 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHHH
Confidence 34579999999999999999999999987765 344443
No 187
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.66 E-value=0.00064 Score=67.61 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.|..|+|.||||+||||+++.+|..++.+++ +.+++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~~ 41 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI--SAGDLLR 41 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC--CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee--cHHHHHH
Confidence 4567999999999999999999999997654 4445443
No 188
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.65 E-value=0.0013 Score=64.49 Aligned_cols=33 Identities=39% Similarity=0.719 Sum_probs=27.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
..+..+.|.||+|+||||+++.+++.+|..++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 346679999999999999999999999765543
No 189
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.65 E-value=0.00081 Score=69.65 Aligned_cols=71 Identities=24% Similarity=0.357 Sum_probs=44.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC----CcEEEeechhh--H-H--------HhhccchHHHHHHHHHHHhcCCeE
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEF--V-E--------LYVGMGASRVRDLFARAKKEAPSI 427 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg----vpfi~is~se~--~-~--------~~vG~~~~~vr~lF~~A~~~aP~I 427 (731)
.+...++|+||+|+|||||++++++... ..++ +..... . . ..+|.....++..+..+....|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 3445688999999999999999998642 2222 111110 0 0 001111234566777777778999
Q ss_pred EEEcccc
Q 004770 428 IFIDEID 434 (731)
Q Consensus 428 LfIDEID 434 (731)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999983
No 190
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.64 E-value=0.001 Score=66.09 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+..|+|.|+||+||||+++.+|..++.+++.. .+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~--d~li~ 41 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST--GDMLR 41 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh--hHHHH
Confidence 34699999999999999999999999877654 44443
No 191
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.64 E-value=0.00093 Score=65.83 Aligned_cols=30 Identities=40% Similarity=0.732 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
.|+|.||||+||||+|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 388999999999999999999999887654
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.62 E-value=0.0013 Score=62.58 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
+..++|+||||+||||+++.+++.+|.+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4568999999999999999999998876654
No 193
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.57 E-value=0.0014 Score=61.64 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
.|+|.|+||+|||++++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999988865
No 194
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.51 E-value=0.0078 Score=61.23 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|+||+|+|||||++.+++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455669999999999999999999864
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0031 Score=61.68 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=27.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~ 402 (731)
..+.|.||+|+||||+++.+++ +|.+++ +..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 3588999999999999999998 888876 444443
No 196
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.46 E-value=0.0017 Score=62.04 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEF 401 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg---vpfi~is~se~ 401 (731)
-|+|.|+||+||||+++.++..++ .++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 489999999999999999999775 34555555444
No 197
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.44 E-value=0.0024 Score=61.96 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEee
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCS 397 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el-gvpfi~is 397 (731)
.+.-|.|.|+||+||||+++.++..+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35679999999999999999999998 58887765
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.43 E-value=0.0022 Score=63.44 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
+..+.|+||+|+||||+++.+++.++++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3468999999999999999999999987764
No 199
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.42 E-value=0.0018 Score=69.29 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s 399 (731)
.++.++|+||+|+|||+|++.+|++++.+++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 355799999999999999999999999888877653
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.40 E-value=0.018 Score=60.87 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
|..+..-++|.|+||+|||+|+..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56667779999999999999999998654 457777664
No 201
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.39 E-value=0.0023 Score=69.67 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=45.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC----CcEEEeech-hhH-H---Hhh-----ccchHHHHHHHHHHHhcCCeE
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSAS-EFV-E---LYV-----GMGASRVRDLFARAKKEAPSI 427 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg----vpfi~is~s-e~~-~---~~v-----G~~~~~vr~lF~~A~~~aP~I 427 (731)
..+...++|+||+|+||||+++++++... ..++.+... ++. . .++ |.....+...+..+....|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 44555689999999999999999998642 223222210 000 0 011 112233456677777778999
Q ss_pred EEEcccc
Q 004770 428 IFIDEID 434 (731)
Q Consensus 428 LfIDEID 434 (731)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999983
No 202
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.37 E-value=0.0028 Score=62.06 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
..+.-+.|.||+|+||||+++++|+.+ |...+.++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 456678999999999999999999987 5544455543
No 203
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.37 E-value=0.002 Score=64.41 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=29.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.++|.||||+||+|.|+.||+..|++.+ +..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHHH
Confidence 3789999999999999999999988764 5556554
No 204
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.36 E-value=0.015 Score=61.15 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=51.6
Q ss_pred hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhh-------HHHhh
Q 004770 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF-------VELYV 406 (731)
Q Consensus 338 devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~-------~~~~v 406 (731)
+.+++.+.+.+..+..+..-..+ ...+..++|+||+|+||||++..+|..+ |..+..+.+..+ +..+.
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~~~~-~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~ 157 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADKWQE-PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYA 157 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGGSCC-CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccc-cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHH
Confidence 34555565544443222211111 2356789999999999999999998754 555555554321 11110
Q ss_pred ---------ccchHHHHHHHHHHHhcCCeEEEEcc
Q 004770 407 ---------GMGASRVRDLFARAKKEAPSIIFIDE 432 (731)
Q Consensus 407 ---------G~~~~~vr~lF~~A~~~aP~ILfIDE 432 (731)
......++..+..+ ..|.+|+||-
T Consensus 158 ~~~gl~~~~~~~~~~l~~al~~~--~~~dlvIiDT 190 (296)
T 2px0_A 158 ELLQAPLEVCYTKEEFQQAKELF--SEYDHVFVDT 190 (296)
T ss_dssp TTTTCCCCBCSSHHHHHHHHHHG--GGSSEEEEEC
T ss_pred HhcCCCeEecCCHHHHHHHHHHh--cCCCEEEEeC
Confidence 11223344444433 5678999993
No 205
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.36 E-value=0.015 Score=62.69 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
|..+..-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 55666679999999999999999998763 667766654
No 206
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.35 E-value=0.0026 Score=60.87 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEee
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el---gvpfi~is 397 (731)
-+.|.|+||+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89988764
No 207
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.31 E-value=0.0024 Score=63.19 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999999887654
No 208
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.31 E-value=0.0031 Score=61.29 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
.+.|.|++|+|||++++.+|+.++++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999888754
No 209
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.28 E-value=0.0021 Score=62.62 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.|.|+|++|+||||+++.+++ +|++++.. .++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~--d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA--DKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH--HHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc--cHHHH
Confidence 488999999999999999999 88777654 44443
No 210
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.24 E-value=0.0029 Score=64.03 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
.|..+.|.||||+||||+++.++..+|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 36779999999999999999999999876553
No 211
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.24 E-value=0.026 Score=63.81 Aligned_cols=109 Identities=22% Similarity=0.164 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh----HHHh--hc----------------------cc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VELY--VG----------------------MG 409 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~----~~~~--vG----------------------~~ 409 (731)
+......++|.||||+|||+|++.+++.. |-+.+++...+- .... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45566679999999999999999998754 445555543321 1100 00 12
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCC
Q 004770 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (731)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 480 (731)
....+.++..+....|.+|+||=+..+.... ...+..+.+..++..+.. .++.+|.++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~-------~~~~~~~~i~~ll~~l~~----~g~tvilvsh~ 416 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV-------SNNAFRQFVIGVTGYAKQ----EEITGLFTNTS 416 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS-------CHHHHHHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC-------ChHHHHHHHHHHHHHHHh----CCCEEEEEECc
Confidence 3455667777777889999999665553221 112245556666666642 23444445543
No 212
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.24 E-value=0.0025 Score=61.55 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
.|.|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 213
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.23 E-value=0.00087 Score=72.69 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=27.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999999988855
No 214
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.23 E-value=0.023 Score=64.22 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHH--HHHhc--CCcEEEeechhhHHH------hhccc----------------------
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKA--VAGEA--EVPFISCSASEFVEL------YVGMG---------------------- 409 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkA--lA~el--gvpfi~is~se~~~~------~vG~~---------------------- 409 (731)
......++|.||+|+|||+|++. +++.. +-.-+++++.+.... .+|..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 45566799999999999999999 44432 344555654331100 00000
Q ss_pred --------hHHHHHHHHHHHhcCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCC
Q 004770 410 --------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (731)
Q Consensus 410 --------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 481 (731)
...............|.+|+|||+-++.... ..+....+.+..++..+.. .++.||.+|.+.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~------~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~ 185 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY------DASSVVRRELFRLVARLKQ----IGATTVMTTERI 185 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT------CCHHHHHHHHHHHHHHHHH----HTCEEEEEEECS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc------CCHHHHHHHHHHHHHHHHH----CCCEEEEEecCC
Confidence 0112222333334678899999997754321 1233445566677776642 245666677766
Q ss_pred CCC
Q 004770 482 DVL 484 (731)
Q Consensus 482 d~L 484 (731)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 554
No 215
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.21 E-value=0.0014 Score=70.09 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh-h-----HHH--hhccchHHHHHHHHHHHhcCCeEEEEcccc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-F-----VEL--YVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgv--pfi~is~se-~-----~~~--~vG~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (731)
...++|+||+|+|||||++++++.... -.+.+.... + ... ++..+..+.+..+..|....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 446999999999999999999997632 234443321 1 000 111134567788888888899999999974
Q ss_pred h
Q 004770 435 A 435 (731)
Q Consensus 435 a 435 (731)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.21 E-value=0.0073 Score=67.13 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=45.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------H---Hhhcc----------chHHHHHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------E---LYVGM----------GASRVRDLFARA 420 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~-------~---~~vG~----------~~~~vr~lF~~A 420 (731)
.|.-++++||+|+||||++..+|..+ +..+..+++.-+. . ...+. ........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999998754 5555555543211 0 00110 112234455566
Q ss_pred HhcCCeEEEEcccch
Q 004770 421 KKEAPSIIFIDEIDA 435 (731)
Q Consensus 421 ~~~aP~ILfIDEIDa 435 (731)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 656788999998744
No 217
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.20 E-value=0.021 Score=56.91 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=66.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEee---ch------hhHHHhh-----------c------cchHHHHHHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS---AS------EFVELYV-----------G------MGASRVRDLF 417 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el---gvpfi~is---~s------e~~~~~v-----------G------~~~~~vr~lF 417 (731)
.|++|+++|.|||++|-++|-++ |..+..+. +. .+++.+. . ......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48899999999999999998764 66666652 21 2333321 0 0123455566
Q ss_pred HHHHh----cCCeEEEEcccchhhcccCCcccccchHHHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCCCccccCCCc
Q 004770 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (731)
Q Consensus 418 ~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 493 (731)
..++. ....+|+|||+-....-.- ... ..++..+..- ....-||.|+|.+ ++.|+. .
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~-----l~~-------~ev~~~l~~R--p~~~~vIlTGr~a---p~~l~e--~ 170 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY-----LPL-------EEVISALNAR--PGHQTVIITGRGC---HRDILD--L 170 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS-----SCH-------HHHHHHHHTS--CTTCEEEEECSSC---CHHHHH--H
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC-----CCH-------HHHHHHHHhC--cCCCEEEEECCCC---cHHHHH--h
Confidence 66654 3467999999966432211 111 2233444321 2345677788775 555654 4
Q ss_pred cceEEEee
Q 004770 494 FDRVVMVE 501 (731)
Q Consensus 494 Fdr~I~v~ 501 (731)
-|.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 56555543
No 218
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.20 E-value=0.0049 Score=60.85 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~~ 405 (731)
.|.|+|++|+||||+++.++..+|++++. +.++....
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~~~ 50 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGHEV 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHHHH
Confidence 48899999999999999999998988765 44554433
No 219
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.17 E-value=0.0037 Score=60.44 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.|..|.|+|++|+|||++++.++.. |.+++. ..++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id--~d~~~~ 43 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD--LDALAA 43 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE--HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc--ccHHHH
Confidence 3556999999999999999999998 887764 444443
No 220
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.14 E-value=0.0031 Score=63.09 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
.++|.|+||+||||+++.++..++.+++ +..+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHHH
Confidence 3889999999999999999999987654 4445543
No 221
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.10 E-value=0.0041 Score=59.82 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEee
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---gvpfi~is 397 (731)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 99987654
No 222
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.10 E-value=0.0046 Score=62.87 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--------EEEeechhhH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FISCSASEFV 402 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvp--------fi~is~se~~ 402 (731)
..|..|.|.|++|+||||+|+.|+..++.+ ...++..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 345679999999999999999999999877 3356666654
No 223
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.09 E-value=0.0042 Score=61.25 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
..+.-+.|.||+|+|||||++.|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455688999999999999999999874
No 224
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.09 E-value=0.028 Score=57.51 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||++.+++-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999999854
No 225
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.03 E-value=0.0019 Score=63.15 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvp 392 (731)
.+.-|+|.|+||+||||+++.++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999987544
No 226
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.01 E-value=0.0051 Score=59.68 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP--FIS 395 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvp--fi~ 395 (731)
+.-|+|.|+||+||||+++.++..++.. ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 4568999999999999999999988763 544
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.00 E-value=0.0044 Score=63.30 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
.|..+.|.||||+|||++++.+|+.++.+++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 35679999999999999999999999987754
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.99 E-value=0.0066 Score=59.57 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
...++-++|+||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34567799999999999999999999874
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.97 E-value=0.0062 Score=60.17 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.+.-+.|+||+|+|||+|++.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456688999999999999999999864
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.95 E-value=0.0037 Score=67.34 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s 399 (731)
.++-++|.||+|+|||+|+..||++++.+++..+.-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 345699999999999999999999999888776553
No 231
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.93 E-value=0.0022 Score=62.60 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.|.-|+|.|+||+||||+++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 466799999999999999999999764
No 232
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0048 Score=63.56 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
...+.|+|++|+||||+++.+|+.++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45699999999999999999999999988763
No 233
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.86 E-value=0.025 Score=65.38 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
+.+++.||||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46999999999999988877643
No 234
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.85 E-value=0.0042 Score=60.84 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEe
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISC 396 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el-gvpfi~i 396 (731)
.+.-+.|+|++|+||||+++.+++.+ +++++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 34558899999999999999999987 6655543
No 235
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.85 E-value=0.024 Score=59.13 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||++++++-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345568999999999999999999854
No 236
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.82 E-value=0.045 Score=60.84 Aligned_cols=39 Identities=26% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
|..+..-++|.|+||+|||+||..+|..+ |.++.+++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56666779999999999999999988754 6677777643
No 237
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.79 E-value=0.045 Score=61.44 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeech
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~s 399 (731)
|..+..-++|.|+||+|||+|+..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 56667779999999999999999998754 5677777653
No 238
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.78 E-value=0.025 Score=58.54 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|.||+|+|||||++++++-.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445568899999999999999999853
No 239
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.77 E-value=0.0067 Score=59.86 Aligned_cols=31 Identities=32% Similarity=0.345 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
|.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 88776653
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.77 E-value=0.0076 Score=59.44 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998764
No 241
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.77 E-value=0.0072 Score=60.73 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
...+..+.|.|++|+|||++++.+|+.+|++++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3455679999999999999999999999988764
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.74 E-value=0.0099 Score=59.21 Aligned_cols=28 Identities=18% Similarity=0.478 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
..++-+.|+||+|+|||+|+++|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456789999999999999999998753
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.74 E-value=0.0092 Score=57.38 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
..+..++|.|+||+||||+++.++..+ +.++..++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345668999999999999999999876 4445555543
No 244
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.74 E-value=0.0069 Score=59.65 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~i 396 (731)
|..+.|+|++|+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34699999999999999999999999887653
No 245
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.73 E-value=0.006 Score=65.01 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
..|+-++|.||+|+|||+||..+|...+.++++++.-.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 34567889999999999999999999998887766543
No 246
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.73 E-value=0.0077 Score=61.51 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
+..+.|.||+|+||||+++.+|+.+|.+++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468899999999999999999999987763
No 247
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.73 E-value=0.0053 Score=63.63 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-CCcEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFI 394 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-gvpfi 394 (731)
|.-++|.|+||+||||+|+.++.+. +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4568999999999999999999974 55444
No 248
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.72 E-value=0.032 Score=59.18 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4566679999999999999999999854
No 249
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.72 E-value=0.03 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
+.+++.+|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999988877764
No 250
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.70 E-value=0.0096 Score=65.56 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
..|.-|+|+|+||+||||+|+.++..++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 456779999999999999999999999876554
No 251
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.69 E-value=0.023 Score=64.54 Aligned_cols=42 Identities=29% Similarity=0.463 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY 405 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~~~ 405 (731)
.|.-|+|+|.||+|||++|+.+|..+ +++...++..++....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 34568999999999999999999987 5566667777766543
No 252
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.67 E-value=0.0069 Score=59.71 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~ 401 (731)
..+.-++|.|+||+||||+++.+++.+ |.+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 445678999999999999999999865 466777775443
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.61 E-value=0.0077 Score=58.02 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.++-+.|+||+|+|||||++.+++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345689999999999999999998753
No 254
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.60 E-value=0.047 Score=54.67 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVA 386 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA 386 (731)
.+.+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3569999999999998766554
No 255
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.59 E-value=0.013 Score=73.73 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
..++..-+.|+||+|+|||||++.+.++..
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 345666799999999999999999998763
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.59 E-value=0.0075 Score=58.45 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..+.-+.|+||+|+||||+++.+++..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678999999999999999999976
No 257
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.58 E-value=0.041 Score=63.02 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4556679999999999999999999864
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.56 E-value=0.02 Score=56.07 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se 400 (731)
..+.-+.|.||+|+||||+++.+++.+ +.+++..+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 345568899999999999999999875 66666655443
No 259
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.53 E-value=0.04 Score=53.21 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=15.0
Q ss_pred CeEEEEcCCCCcHHHHH
Q 004770 366 RGVLLVGLPGTGKTLLA 382 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LA 382 (731)
+.+++.+|+|+|||..+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57999999999999863
No 260
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.51 E-value=0.038 Score=63.66 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..++...+.|+||+|+|||||++.+++..
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 35566779999999999999999999854
No 261
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.49 E-value=0.0065 Score=63.24 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
|.-|.|+|++|+||||+|+.++ ++|.+++ ++.++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~~~ 110 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHLGH 110 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHHHH
Confidence 5569999999999999999999 6787765 4445543
No 262
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.49 E-value=0.036 Score=66.98 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh-----cCC--c------------EEEeechhhHHHhhccchHHHHHHHHHHH-
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE-----AEV--P------------FISCSASEFVELYVGMGASRVRDLFARAK- 421 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~e-----lgv--p------------fi~is~se~~~~~vG~~~~~vr~lF~~A~- 421 (731)
......++|+||.|+||||+.|.++.- .+. | |-.+...+............+++....++
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence 344567999999999999999998742 121 1 11111222222111111112222222222
Q ss_pred hcCCeEEEEcccchhhcccCCcccccchH-HHHHHHHHHHHhhcCCCCCCcEEEEEEcCCCCCC
Q 004770 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSND-EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (731)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~-e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 484 (731)
...|.+|++||.-+ +.+. ....+...++..+.. ..+..+|.+|...+..
T Consensus 750 a~~p~LlLLDEP~~-----------GlD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 750 ATSQSLVILDELGR-----------GTSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CCTTCEEEEESTTT-----------TSCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGG
T ss_pred ccCCCEEEEeCCCC-----------CCCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHH
Confidence 46789999999743 1222 233444466666531 1345677788876543
No 263
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.45 E-value=0.039 Score=60.28 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||.|.||+-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 444568899999999999999999853
No 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.41 E-value=0.021 Score=69.75 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=34.4
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
+|.++.+++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999888888766421 12456899999999999999999864
No 265
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.34 E-value=0.017 Score=57.46 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCCCcHH-HHHHHHHH--hcCCcEEEeech---hhHHH---hhcc-----chHHHHHHHHHHHhcCCeEEE
Q 004770 364 PPRGVLLVGLPGTGKT-LLAKAVAG--EAEVPFISCSAS---EFVEL---YVGM-----GASRVRDLFARAKKEAPSIIF 429 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT-~LAkAlA~--elgvpfi~is~s---e~~~~---~vG~-----~~~~vr~lF~~A~~~aP~ILf 429 (731)
+.+-.++|||.|+||| .|.+++.+ +.+..++.+... .+.+. ..|. ......++++..+ ...+|+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEE
Confidence 4456889999999999 89998866 346777777643 11111 0010 0111223333322 245999
Q ss_pred Ecccchh
Q 004770 430 IDEIDAV 436 (731)
Q Consensus 430 IDEIDaL 436 (731)
|||++-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999876
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.34 E-value=0.033 Score=61.61 Aligned_cols=93 Identities=16% Similarity=0.298 Sum_probs=52.1
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC---cEEEeech-hhH-
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSAS-EFV- 402 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elgv---pfi~is~s-e~~- 402 (731)
..+++++.-..+.+..|++++ . .+...++|+||+|+||||+.+++++.... .++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~----------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---K----------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---T----------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---H----------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 456777754444444444432 1 12234789999999999999999997642 23332211 110
Q ss_pred H----Hhhc-cchHHHHHHHHHHHhcCCeEEEEccc
Q 004770 403 E----LYVG-MGASRVRDLFARAKKEAPSIIFIDEI 433 (731)
Q Consensus 403 ~----~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEI 433 (731)
. ..+. ...-...+.+..+....|.++++.|+
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 0 0000 00112334445555678999999985
No 267
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.32 E-value=0.046 Score=59.89 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.....-+.|.||+|+|||||.+.|++-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 445566999999999999999999984
No 268
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.30 E-value=0.022 Score=61.93 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|.||+|+|||||++++++-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3445568899999999999999999853
No 269
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.27 E-value=0.0097 Score=64.13 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~ 398 (731)
++-|+|.||+|+|||+||+.||..++..++..+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 3468999999999999999999999876665543
No 270
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.24 E-value=0.011 Score=63.15 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=28.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s 399 (731)
+-++|.||+|+|||+|+..+|..++..+++.+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4588999999999999999999998777665543
No 271
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.24 E-value=0.029 Score=66.73 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=34.2
Q ss_pred CCCcccccccCChHhHHHHHHHHHHhcChhH--Hhh--hCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDK--YIR--LGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 326 ~~~vtf~DV~G~devK~~L~eiV~~Lk~p~~--~~~--lg~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.+..+|+++.-.+...+.+.+.- ..|-. ... ........+++.||+|+|||+++..++.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~---~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR---ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT---TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCccccCCCHHHHHHHHHhh---cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34556777765555555444322 11210 000 01122356999999999999987777654
No 272
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.24 E-value=0.043 Score=59.75 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|.||+|+|||||.+.||+-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3445568899999999999999999843
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.19 E-value=0.0098 Score=58.20 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEE
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFIS 395 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~ 395 (731)
.+.-+.|.||+|+|||||++.+++.++ +.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 445688999999999999999999877 54443
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.19 E-value=0.013 Score=56.36 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~ 401 (731)
.++|.||+|+||||+++.+++..+. .+.++..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244555444
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.14 E-value=0.013 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.+.-+.|.||+|+|||||++.+++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999985
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.12 E-value=0.013 Score=61.69 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=24.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
...|.-|.|.||+|+|||||++.+++.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34566788999999999999999998775
No 277
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.06 E-value=0.038 Score=63.34 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999854
No 278
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.05 E-value=0.13 Score=59.01 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4556679999999999999999999854
No 279
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.04 E-value=0.057 Score=53.33 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCcccccccCCh-HhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHHH
Q 004770 326 GDTITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 326 ~~~vtf~DV~G~d-evK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAk 383 (731)
.|..+|+|..+.. ++.+.|.+. -+..|..++... ....+.+++.+|+|+|||..+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 4567788865554 344443332 133333232221 1234679999999999997543
No 280
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.99 E-value=0.012 Score=59.04 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is 397 (731)
+++++|.||+|+|||+||.+++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 56799999999999999999999876 665544
No 281
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.99 E-value=0.015 Score=57.49 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=27.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
..|.|.||+|+|||++++.+|..+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999984
No 282
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.98 E-value=0.0075 Score=68.40 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechh-hHH---Hh--------hccchHHHHHHHHHHHhcCCeEEE
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASE-FVE---LY--------VGMGASRVRDLFARAKKEAPSIIF 429 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~se-~~~---~~--------vG~~~~~vr~lF~~A~~~aP~ILf 429 (731)
.+.+++|.||+|+||||+++++++... ...+.+.... +.- .+ .+.....+.+++..+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345699999999999999999999763 3344544321 110 00 011122355666677778899999
Q ss_pred Ecccc
Q 004770 430 IDEID 434 (731)
Q Consensus 430 IDEID 434 (731)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99973
No 283
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.96 E-value=0.027 Score=64.73 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++..-+.|+||+|+|||||++.+++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4566679999999999999999999854
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.95 E-value=0.014 Score=56.48 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
|+.+.|.||+|+|||||++.+++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998753
No 285
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.87 E-value=0.12 Score=50.44 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=33.7
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHHHHHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAkAlA~ 387 (731)
..+|+|+.-.+++.+.|.+. -+..+..++... ....+.+++.+|+|+|||..+-..+-
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 35688886666666665541 122232232211 11235699999999999986655443
No 286
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.85 E-value=0.077 Score=55.30 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=33.3
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhCC----CCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA----RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~----~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.+|+++.-.+.+.+.|++. -+..+..++.... ...+.+++.+|+|+|||+.+-..+-+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4677776566666655542 1222222221111 12368999999999999876554433
No 287
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.75 E-value=0.052 Score=57.77 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
...++.++++||+|+||||++..+|..+ +..+..+.+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567779999999999999999998864 455555543
No 288
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.72 E-value=0.072 Score=64.56 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~ 387 (731)
...-++|+||.|+||||+.|.+|.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999953
No 289
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.71 E-value=0.058 Score=52.92 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=34.1
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHH-HHHHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLL-AKAVAG 387 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~L-AkAlA~ 387 (731)
..+|+++.-.+.+.+.|.+. -+..+..++... ....+.+++.+|+|+|||.. +-.+..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 45788887666666666543 122222222211 12236799999999999976 333343
No 290
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.67 E-value=0.016 Score=56.83 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+++.+.|+||+|+|||||++.+++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999999865
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.61 E-value=0.027 Score=59.49 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...+.-+.|+||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556678999999999999999999875
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.031 Score=53.17 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=29.5
Q ss_pred ChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 337 VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 337 ~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...+++.+.+++..+... .......|+++|++|+|||+|+.++.+..
T Consensus 26 ~~~l~~~l~~~~~~~~~~------~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGG------GGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCC------CCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445555555554433221 12345579999999999999999998864
No 293
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.59 E-value=0.044 Score=61.99 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
..|+.|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 456789999999999999999999654 555655555
No 294
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.59 E-value=0.056 Score=57.78 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...|.-+.|+||+|+||||+++.+|+.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567779999999999999999999865
No 295
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.56 E-value=0.018 Score=63.46 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~ 398 (731)
++-++|.||+|+|||+|+..+|..++..+++.+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3457899999999999999999999877765544
No 296
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.56 E-value=0.053 Score=60.17 Aligned_cols=71 Identities=25% Similarity=0.350 Sum_probs=45.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHH----H---h---hc---------cc-hHHHHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE----L---Y---VG---------MG-ASRVRDLFA 418 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~se~~~----~---~---vG---------~~-~~~vr~lF~ 418 (731)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+.. . + .+ .. ...+++.+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999988654 66676666542211 0 0 00 11 222356677
Q ss_pred HHHhcCCeEEEEccc
Q 004770 419 RAKKEAPSIIFIDEI 433 (731)
Q Consensus 419 ~A~~~aP~ILfIDEI 433 (731)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666545569999864
No 297
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.51 E-value=0.026 Score=65.51 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~ 401 (731)
.+..|+|+|.||+||||+|++++..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45679999999999999999999998 999999875443
No 298
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.51 E-value=0.075 Score=52.73 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=31.1
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLA 382 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LA 382 (731)
..+|+++.-.+.+.+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34688887666666655542 122222222211 122467999999999999853
No 299
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.48 E-value=0.018 Score=57.40 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=17.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHH-Hhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVA-GEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA-~el 389 (731)
..+.-+.|+||+|+|||||++.++ +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345568899999999999999999 765
No 300
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.47 E-value=0.055 Score=54.20 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=30.1
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAk 383 (731)
+..+|+++.-.+++.+.|.+. -+..|..++... ....+.+++.+|+|+|||..+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 345677765555555544431 122222222111 1123579999999999997643
No 301
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.42 E-value=0.073 Score=52.49 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH---H----Hhhccc-----hHHHHHHHHHHHhcCCeEEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV---E----LYVGMG-----ASRVRDLFARAKKEAPSIIF 429 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~---~----~~vG~~-----~~~vr~lF~~A~~~aP~ILf 429 (731)
.+-.+++||+|+|||+.+-.++.++ +..++.+...--. + ...|.. .....++++.+.. ...+|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 3467899999999999888887764 6665555321100 0 011110 0111345554432 346999
Q ss_pred Ecccchh
Q 004770 430 IDEIDAV 436 (731)
Q Consensus 430 IDEIDaL 436 (731)
|||++.+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999875
No 302
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.39 E-value=0.027 Score=53.78 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|.||.|+|||||+|++++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3445568899999999999999999987
No 303
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.38 E-value=0.022 Score=56.73 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..+.-+.|+||+|+|||||++.+++..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445568999999999999999999976
No 304
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.38 E-value=0.15 Score=54.68 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEee
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is 397 (731)
.+..|.|+|+||+|||+|+.+++..+ +..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34568999999999999999998764 44444443
No 305
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.35 E-value=0.035 Score=69.75 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+-|+||+|+|||||++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4556669999999999999999998843
No 306
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.35 E-value=0.025 Score=55.53 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
..+.-+.|.||+|+|||||++++++...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4455688999999999999999999874
No 307
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.30 E-value=0.094 Score=56.78 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
-+.|+||+|+|||+|.++|+.-+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999995443
No 308
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.23 E-value=0.099 Score=58.20 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 404 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg---vpfi~is~se~~~~ 404 (731)
.+..|+|+|.||+|||++++.++..++ .+...++..++...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 455699999999999999999998864 56666665554443
No 309
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.22 E-value=0.083 Score=55.42 Aligned_cols=72 Identities=29% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh----h---HHHh---hc---------cch-HHHHHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE----F---VELY---VG---------MGA-SRVRDLFARA 420 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se----~---~~~~---vG---------~~~-~~vr~lF~~A 420 (731)
.+..+.++|++|+|||++++.+|..+ +..+..+++.- . ...+ .+ ..+ ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999864 44444444321 0 0000 00 111 2235566766
Q ss_pred HhcCCeEEEEcccch
Q 004770 421 KKEAPSIIFIDEIDA 435 (731)
Q Consensus 421 ~~~aP~ILfIDEIDa 435 (731)
....+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 656778999999633
No 310
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.19 E-value=0.02 Score=61.88 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=46.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeech-hhH-----HH--hh-------cc-chHHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFV-----EL--YV-------GM-GASRVRDLFARAKKE 423 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~is~s-e~~-----~~--~v-------G~-~~~~vr~lF~~A~~~ 423 (731)
.+....++|+||+|+|||||++++++... .-.+.+... ++. .. ++ +. ....+++.+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 34456799999999999999999999763 223333321 110 00 11 10 222466777778778
Q ss_pred CCeEEEEcccc
Q 004770 424 APSIIFIDEID 434 (731)
Q Consensus 424 aP~ILfIDEID 434 (731)
.|.+++++|+.
T Consensus 252 ~pd~~l~~e~r 262 (361)
T 2gza_A 252 KPTRILLAELR 262 (361)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEEcCch
Confidence 89999999974
No 311
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.19 E-value=0.057 Score=52.17 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAk 383 (731)
.+.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3679999999999996544
No 312
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.14 E-value=0.14 Score=61.02 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
....++|+||.|+||||+.|.++.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4456899999999999999999874
No 313
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.10 E-value=0.037 Score=60.00 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...|.-++|+||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4566779999999999999999999865
No 314
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.08 E-value=0.048 Score=54.56 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=32.4
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAk 383 (731)
+..+|+++.-.+++.+.|.+. -+..+..++... ....+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 446799986566655555431 133233232211 1224679999999999997643
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.07 E-value=0.028 Score=56.76 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elgvp 392 (731)
..+.-+-|.||+|+|||||++.+++.+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344458899999999999999999987754
No 316
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.06 E-value=0.032 Score=65.12 Aligned_cols=33 Identities=30% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHH-HHhc--CCcEEEee
Q 004770 365 PRGVLLVGLPGTGKTLLAKAV-AGEA--EVPFISCS 397 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAl-A~el--gvpfi~is 397 (731)
.+.+++.+|+|+|||+.+-.. ...+ +...+.+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 567999999999999987433 2222 44555554
No 317
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.05 E-value=0.24 Score=57.40 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeech
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~s 399 (731)
-.||.||||||||+++-.+... .+.++..+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3789999999999654444332 25666666554
No 318
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.04 E-value=0.051 Score=60.28 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~s 399 (731)
.|..++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46789999999999999999999865 3555555543
No 319
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.00 E-value=0.12 Score=60.36 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.4
Q ss_pred CCCeEEEEcCCCCcHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAk 383 (731)
..+.++++||+|+|||+.+.
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 36789999999999998873
No 320
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.99 E-value=0.035 Score=58.85 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=26.0
Q ss_pred hCCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 360 lg~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+..++...+.|+||+|+|||||++.|++..
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345666779999999999999999999986
No 321
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.97 E-value=0.031 Score=57.01 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~ 403 (731)
+-|.||||+||||+|+.|+..+++++++ ..+++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is--~gdllR 44 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS--TGDMLR 44 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC--HHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee--chHHHH
Confidence 6789999999999999999999988764 445544
No 322
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.95 E-value=0.12 Score=60.27 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=31.7
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHH--hhh--CCCCCCeEEEEcCCCCcHHHHHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKY--IRL--GARPPRGVLLVGLPGTGKTLLAKA 384 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~--~~l--g~~~pkgVLL~GPPGTGKT~LAkA 384 (731)
..+|+++.-.+.+++.+.+. . +..+..+ ..+ .....+.+++.||+|+|||+.+-.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~-g-~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR-G-IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT-S-CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC-C-CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHH
Confidence 45688876555555444331 0 1111111 111 134467899999999999998743
No 323
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.85 E-value=0.1 Score=54.89 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=43.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh----H---HHh---hc---------cc-hHHHHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----V---ELY---VG---------MG-ASRVRDLFARAK 421 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~----~---~~~---vG---------~~-~~~vr~lF~~A~ 421 (731)
+..++++|++|+|||+++..+|..+ +..+..+++.-+ . ..+ .+ .. ...+.+.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999998765 555555554311 0 000 00 11 122345666666
Q ss_pred hcCCeEEEEccc
Q 004770 422 KEAPSIIFIDEI 433 (731)
Q Consensus 422 ~~aP~ILfIDEI 433 (731)
.....+|+||=.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 455679999864
No 324
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.81 E-value=0.027 Score=59.06 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFV 402 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg---vpfi~is~se~~ 402 (731)
+.-|.|.||+|+||||+|+.++..++ ..+..+++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34588999999999999999998765 445556665553
No 325
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.80 E-value=0.015 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg 390 (731)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 326
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.78 E-value=0.039 Score=55.45 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
..+.-+.|.||+|+|||||++++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455688999999999999999999764
No 327
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.78 E-value=0.062 Score=60.25 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3459999999999999999887653
No 328
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.77 E-value=0.041 Score=54.01 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 004770 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (731)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elgvpfi~is~se 400 (731)
+|++|++|+|||++|..++.. +.|.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 329
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.73 E-value=0.095 Score=51.45 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.3
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 004770 366 RGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAk 383 (731)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 330
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.72 E-value=0.12 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=17.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAV 385 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAl 385 (731)
.++.+++.+|+|+|||+.+-..
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 3478999999999999865433
No 331
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.71 E-value=0.19 Score=53.63 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=33.2
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHHHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAV 385 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAkAl 385 (731)
+..+|+++.-.+++.+.|.+. -+..|..++... ....+.+++.+|+|+|||..+-..
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 345788886666666655442 122222222211 112367999999999999765543
No 332
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.70 E-value=0.037 Score=55.91 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~ 395 (731)
..|.|.|++|||||++++.+|..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358899999999999999999999999865
No 333
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.66 E-value=0.13 Score=51.95 Aligned_cols=55 Identities=25% Similarity=0.243 Sum_probs=30.9
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAk 383 (731)
+..+|+++.-.+...+.|.+.- +..+..++... ....+.+++.+|+|+|||..+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLG--WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTT--CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 3456888765555555444310 22222222211 1224679999999999997643
No 334
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.62 E-value=0.1 Score=55.72 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
..|.-+.|.||+|+|||||++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566788999999999999999998764
No 335
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.61 E-value=0.11 Score=59.73 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC----CcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg----vpfi~is~se~~~ 403 (731)
.+..|+|.|+||+||||+|++++..++ .+++.++...+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 456689999999999999999999876 8888888665543
No 336
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.19 Score=58.18 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...-+.|.||+|+|||||.+.+++..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45568899999999999999999854
No 337
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.40 E-value=0.046 Score=55.08 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEe
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISC 396 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg--vpfi~i 396 (731)
.+.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 445588999999999999999999885 465543
No 338
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.39 E-value=0.43 Score=50.26 Aligned_cols=56 Identities=20% Similarity=0.090 Sum_probs=32.2
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHHHHHH
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAVA 386 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAkAlA 386 (731)
.+|+++.-.+++.+.|.+. -+..+..++... ....+.+++.+|+|+|||..+-..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHH
Confidence 3577776666666655542 122222222211 1224679999999999998764443
No 339
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.36 E-value=0.054 Score=61.18 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...+.-++|+||+|+|||||++.||+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4456678999999999999999999865
No 340
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.34 E-value=0.15 Score=63.82 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+.|+||+|+|||||++.+++..
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556679999999999999999999865
No 341
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.23 E-value=0.046 Score=57.47 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
..+.-+.|.||+|+|||||++.+++.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999999999765
No 342
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.08 E-value=0.23 Score=54.53 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elgvpfi~is~s 399 (731)
.++|++|+|+|||..+-.++.+.+.+.+.+-..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888888777776554
No 343
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.05 E-value=0.086 Score=56.84 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAV 385 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAl 385 (731)
.+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 457999999999999844433
No 344
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.02 E-value=0.27 Score=54.39 Aligned_cols=35 Identities=31% Similarity=0.216 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
.|..++++||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 56678899999999999999999865 444544443
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.02 E-value=0.048 Score=53.56 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.+.|+||+|+|||||++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999875
No 346
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.00 E-value=0.24 Score=52.62 Aligned_cols=58 Identities=22% Similarity=0.096 Sum_probs=32.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCCcHHHHHHHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVA 386 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg~---~~pkgVLL~GPPGTGKT~LAkAlA 386 (731)
+..+|+|+.-.++..+.|.+. -+..+..++.... ...+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 346799987666666655541 1222222221111 123569999999999998654433
No 347
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.90 E-value=0.13 Score=51.81 Aligned_cols=31 Identities=13% Similarity=-0.050 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEee
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el---gvpfi~is 397 (731)
-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45689999999999888877654 66666554
No 348
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.89 E-value=0.29 Score=58.13 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
...++|+||+|+||||+.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456999999999999999999863
No 349
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.86 E-value=0.34 Score=54.46 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.6
Q ss_pred CCCeEEEEcCCCCcHHHH
Q 004770 364 PPRGVLLVGLPGTGKTLL 381 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~L 381 (731)
..+.+|+.+|+|+|||..
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 456899999999999974
No 350
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.83 E-value=0.033 Score=56.82 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEE
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFI 394 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el-gvpfi 394 (731)
..+.-|.|.|++|+||||+++.|+..+ +.+++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 345668999999999999999999998 54444
No 351
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.82 E-value=0.066 Score=52.01 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...+-+.|.||+|+|||+|++.++..+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 344568999999999999999998864
No 352
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.81 E-value=0.13 Score=54.79 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=29.6
Q ss_pred cccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHHH
Q 004770 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 329 vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LAk 383 (731)
.+|+++.-.+.+.+.|.+. -+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 4577666556655555441 122222222111 1124569999999999998643
No 353
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.79 E-value=0.33 Score=55.08 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCcccccccCChHhHHHHHHHHHHh--cChhHHhhhC-----CCCCCeEEEEcCCCCcHHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFL--RSPDKYIRLG-----ARPPRGVLLVGLPGTGKTLL 381 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~L--k~p~~~~~lg-----~~~pkgVLL~GPPGTGKT~L 381 (731)
+.++|+++.-.......+.+.+..+ ..+..++... ....+.+++.+|+|+|||..
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 4567777763322333444444332 2222222211 11456899999999999984
No 354
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.76 E-value=0.076 Score=52.09 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpf 393 (731)
.+++||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 568999999999999999999885 4443
No 355
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.74 E-value=0.072 Score=53.43 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-CCcE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPF 393 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-gvpf 393 (731)
|+-|.|.|++|+||||+++.++..+ +..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 4568999999999999999999998 4433
No 356
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.69 E-value=0.32 Score=48.74 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc--CCcEEEee
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCS 397 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el--gvpfi~is 397 (731)
.+..+++.|.+|+|||+++..+|..+ +.....++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568899999999999999998654 44554444
No 357
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.56 E-value=0.067 Score=56.67 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...+.-+.|.||+|+|||||++.|++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3455668899999999999999999975
No 358
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.52 E-value=0.049 Score=55.22 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.....-+.|.||+|+|||||.+.+++-..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34555689999999999999999998654
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.48 E-value=0.081 Score=55.87 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.+.-+.|+||+|+||||+++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46679999999999999999999865
No 360
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.42 E-value=0.3 Score=49.68 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+..|+|.|++|+|||+|+.++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4569999999999999999998753
No 361
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.40 E-value=0.043 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
....-+.|.||+|+|||||.+.+++-..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455688999999999999999998653
No 362
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.37 E-value=0.18 Score=53.75 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||||+|||||.+++++.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344568899999999999999999754
No 363
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.35 E-value=0.29 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.|+|.|++|+|||+|++++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 364
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.35 E-value=0.085 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg 390 (731)
-.+|+||.|+|||+|++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998765
No 365
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.34 E-value=0.21 Score=51.35 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=24.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~ 398 (731)
+.+++.+|+|+|||..+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 469999999999998777666665655555543
No 366
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.30 E-value=0.31 Score=55.50 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+...-+.|.||+|+|||||++++++..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445668899999999999999999854
No 367
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.23 E-value=0.4 Score=58.71 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVA 386 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA 386 (731)
+..++|+||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4679999999999999999983
No 368
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.20 E-value=0.16 Score=50.91 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elgvpfi~is~se~~~~ 404 (731)
-.|-|+|..|||||++++.++. +|+|++. +..+...
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vid--aD~ia~~ 45 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVD--TDLIAHR 45 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEE--HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEE--CcHHHHH
Confidence 3588999999999999999988 8998865 4444433
No 369
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.16 E-value=0.064 Score=54.64 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
... .-+.|.||+|+|||||.+.+++-..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345 6788999999999999999998753
No 370
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.14 E-value=0.057 Score=55.67 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.....-+.|.||+|+|||||++++++-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34555688999999999999999998754
No 371
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.04 E-value=0.88 Score=43.81 Aligned_cols=24 Identities=46% Similarity=0.574 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
...|+|.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999875
No 372
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.02 E-value=0.11 Score=47.66 Aligned_cols=22 Identities=50% Similarity=0.839 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.++|.|++|+|||+|++++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4899999999999999999653
No 373
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.02 E-value=0.26 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEe
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISC 396 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el-----gvpfi~i 396 (731)
....++|+||+|+|||+|++.+++.. ++.++++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 34569999999999999999998753 4445544
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.94 E-value=0.1 Score=50.68 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....++|+|++|+|||+|+.++++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999999864
No 375
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.93 E-value=0.084 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++|.||+|+|||+|++++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999863
No 376
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.91 E-value=0.082 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.+.|.||+|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 377
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.91 E-value=0.074 Score=54.99 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|.||+|+|||||++.+++-.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455668999999999999999999963
No 378
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.90 E-value=0.074 Score=53.01 Aligned_cols=24 Identities=42% Similarity=0.400 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
...+.|.||+|+|||||++.+++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999975
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.90 E-value=0.096 Score=50.80 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEee
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is 397 (731)
.+-+.|.|++|+|||+|+..++..+ +..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468899999999999999998865 45544444
No 380
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.83 E-value=0.058 Score=54.83 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|.||+|+|||||++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445568899999999999999999865
No 381
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.83 E-value=0.055 Score=55.56 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.....+.|.||+|+|||||.+.+++-..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445688999999999999999998764
No 382
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.81 E-value=0.087 Score=48.03 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.+++.|++|+|||+|++++++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 383
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.81 E-value=0.23 Score=62.19 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.++...+-|+||+|+|||+|++.+++..
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4556679999999999999999999843
No 384
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.80 E-value=0.067 Score=55.11 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
......+.|.||+|+|||||++.+++-..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 44556699999999999999999998753
No 385
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.78 E-value=0.28 Score=52.55 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeec
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~ 398 (731)
++++..|+|+|||..+-+++.+. +.+.+.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 69999999999999888776654 555555544
No 386
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.72 E-value=0.068 Score=55.28 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.....-+.|.||+|+|||||++.+++-..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 44555688999999999999999998754
No 387
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.71 E-value=0.069 Score=54.55 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
....-+.|.||+|+|||||++.+++-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44556889999999999999999986
No 388
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.70 E-value=0.069 Score=55.38 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.....-+.|.||+|+|||||++.+++...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44556689999999999999999999764
No 389
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.63 E-value=0.076 Score=60.77 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC----CcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg----vpfi~is~se~~~ 403 (731)
.+..+.|+|++|+|||||+++||+.++ ..+..+++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 455689999999999999999999874 3455566665543
No 390
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.62 E-value=0.061 Score=54.23 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.....-+.|.||+|+|||||.+.+++...
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34455689999999999999999998753
No 391
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.56 E-value=0.093 Score=48.09 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..+++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999875
No 392
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.54 E-value=0.31 Score=59.31 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~ 387 (731)
.....+.|+||.|+|||||++.+++
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4455689999999999999999994
No 393
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.53 E-value=0.34 Score=55.25 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~se~~~ 403 (731)
.+..|+|+|++|+|||++|+.++..+ |.++..++...+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 35568999999999999999999876 45777777655543
No 394
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.51 E-value=0.064 Score=54.48 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
....-+.|.||+|+|||||.+.+++-..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455688999999999999999998754
No 395
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.48 E-value=0.096 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 396
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.42 E-value=0.077 Score=54.64 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.....-+.|.||+|+|||||.+.+++-..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34555688999999999999999998753
No 397
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.39 E-value=0.078 Score=54.74 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
......+.|.||+|+|||||.+.+++-..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34555688999999999999999998753
No 398
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.39 E-value=0.085 Score=52.87 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
....-+.|.||+|+|||||.+.+++-..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445588999999999999999998754
No 399
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.36 E-value=0.28 Score=49.89 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.3
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 004770 366 RGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAk 383 (731)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 569999999999997643
No 400
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.29 E-value=0.43 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..+-.++.|+||||||++++.++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3455789999999999999888764
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.27 E-value=0.083 Score=50.15 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
....|++.|++|+|||+|+.++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556999999999999999999865
No 402
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.25 E-value=0.07 Score=54.71 Aligned_cols=29 Identities=34% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
......+.|.||+|+|||||.+.+++...
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34455688999999999999999998764
No 403
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.16 E-value=0.4 Score=51.04 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..+..+.|.|+||+|||+|+.+++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999998754
No 404
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.15 E-value=0.16 Score=53.60 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=31.8
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLA 382 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~LA 382 (731)
+..+|+++.-.+.+.+.|... -+..+..++... ....+.+++.+|+|+|||..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 456788886666666655542 122222222211 111356999999999999864
No 405
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.15 E-value=0.088 Score=57.07 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||.++||+-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344558899999999999999999854
No 406
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.09 E-value=0.12 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 407
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.07 E-value=0.14 Score=47.53 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.+..|++.|++|+|||+|+.++.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999864
No 408
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.03 E-value=0.075 Score=55.42 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
.....-+.|.||+|+|||||++.+++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34455688999999999999999998764
No 409
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.00 E-value=0.13 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999875
No 410
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.97 E-value=0.11 Score=55.77 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvp 392 (731)
...+.|+||+|+|||||++.+++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4569999999999999999999987654
No 411
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.96 E-value=0.11 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 412
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.89 E-value=0.14 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999875
No 413
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.85 E-value=0.079 Score=54.36 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (731)
....-+.|.||+|+|||||.+.+++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4455688999999999999999998753
No 414
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.80 E-value=0.092 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 415
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.78 E-value=0.93 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|++++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999864
No 416
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.78 E-value=0.14 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (731)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 417
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.77 E-value=0.71 Score=54.89 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
..|..+|+.||+|+|||..+-..+-+. +...+.+..
T Consensus 387 ~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 387 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 345679999999999998776544332 555555543
No 418
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.74 E-value=0.11 Score=56.24 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||.+.+|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 445568899999999999999999854
No 419
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.73 E-value=0.14 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..|++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998754
No 420
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.68 E-value=0.11 Score=56.26 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||.+.+|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344568899999999999999999854
No 421
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.66 E-value=0.12 Score=47.88 Aligned_cols=23 Identities=52% Similarity=0.736 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35999999999999999999864
No 422
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.64 E-value=0.35 Score=48.92 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.+..|+|+|.||+|||+|+.++.+.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3456999999999999999999874
No 423
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.63 E-value=0.22 Score=49.73 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEee
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is 397 (731)
+.-|.|.|++|+||||+++.++..+ +.+++...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 3457789999999999999999876 46665543
No 424
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.62 E-value=0.37 Score=51.12 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=30.0
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhh-----hCCCCCCeEEEEcCCCCcHHHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLA 382 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~-----lg~~~pkgVLL~GPPGTGKT~LA 382 (731)
..+|+++.-.+...+.|.+. -+..|..++. +-...++.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 34577766555555555441 1222222221 11123578999999999999865
No 425
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.61 E-value=0.084 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+.+.|+||+|+|||||++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999875
No 426
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.59 E-value=0.68 Score=45.95 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCcHHHHH
Q 004770 366 RGVLLVGLPGTGKTLLA 382 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LA 382 (731)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999753
No 427
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.56 E-value=0.14 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
...|+|+|++|+|||+|+.++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999864
No 428
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.53 E-value=0.17 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
+..|++.|++|+|||+|+.++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 429
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.53 E-value=0.14 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999875
No 430
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.52 E-value=0.14 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 431
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=90.49 E-value=0.46 Score=49.56 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=31.2
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhh-----hCCCCCCeEEEEcCCCCcHHHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLA 382 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~-----lg~~~pkgVLL~GPPGTGKT~LA 382 (731)
..+|+++.-.+.+.+.|.+. -+..|..++. +-...++.+++++|+|+|||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45788876666655555431 1222222221 11223578999999999999753
No 432
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.48 E-value=0.13 Score=48.56 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
...++|.|+||+|||+|.+++++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999975
No 433
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.48 E-value=0.16 Score=51.81 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCc
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVP 392 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---gvp 392 (731)
.+.-|.|.|++|+||||+++.++..+ +.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45668899999999999999999875 555
No 434
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.46 E-value=0.13 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
...|++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 435
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.44 E-value=0.16 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 436
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.43 E-value=0.11 Score=56.34 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||.+.||+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999999854
No 437
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=90.39 E-value=0.25 Score=49.46 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.1
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 004770 366 RGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAk 383 (731)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999997543
No 438
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.39 E-value=0.13 Score=48.34 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..++|.|++|+|||+|++++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999874
No 439
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.33 E-value=0.14 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 440
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.31 E-value=0.16 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999874
No 441
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.27 E-value=0.84 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.+..|+|.|++|+|||+|..++.+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999874
No 442
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.27 E-value=0.098 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||.+.+|+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 445568899999999999999999854
No 443
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.27 E-value=0.22 Score=50.37 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEe
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC 396 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-------gvpfi~i 396 (731)
+.-|.|.||+|+||||+++.+++.+ +.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 4458888999999999999999876 6666544
No 444
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.20 E-value=0.16 Score=47.18 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|++++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45999999999999999999864
No 445
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.18 E-value=0.16 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.+++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 446
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.17 E-value=0.33 Score=56.44 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHH
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAV 385 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAl 385 (731)
.....-+.|.||+|+|||||++.+
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTT
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHH
Confidence 344556899999999999999764
No 447
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.16 E-value=0.71 Score=47.10 Aligned_cols=70 Identities=19% Similarity=0.086 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeech-------hhHHHhhccc-----hHHHHHHHHHHHhcCCeEE
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS-------EFVELYVGMG-----ASRVRDLFARAKKEAPSII 428 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e---lgvpfi~is~s-------e~~~~~vG~~-----~~~vr~lF~~A~~~aP~IL 428 (731)
...-.+++||.|+|||+.+-..+.. .|..++.+... ...+.. |.. .....++++.+ ....+|
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvV 94 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVI 94 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEE
Confidence 3455778999999999766555443 35555554321 111110 110 00112344444 335699
Q ss_pred EEcccchh
Q 004770 429 FIDEIDAV 436 (731)
Q Consensus 429 fIDEIDaL 436 (731)
+|||+.-+
T Consensus 95 iIDEaQF~ 102 (234)
T 2orv_A 95 GIDEGQFF 102 (234)
T ss_dssp EESSGGGC
T ss_pred EEEchhhh
Confidence 99999865
No 448
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.13 E-value=0.14 Score=47.16 Aligned_cols=21 Identities=48% Similarity=0.737 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 004770 367 GVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~ 387 (731)
.|++.|++|+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 449
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.09 E-value=0.074 Score=51.32 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
......+.|.|++|+|||+|.+++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444569999999999999999997643
No 450
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=90.06 E-value=0.5 Score=53.67 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=29.7
Q ss_pred cCChHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 335 ~G~devK~~L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.-.+...+.+..+++.+.. ..+.+|+++|+|+|||..+-.++..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~----------~~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQ----------GKKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHT----------TCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhc----------CCCceEEEecCCCChHHHHHHHHHH
Confidence 3345566666666554432 2356899999999999988777654
No 451
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.06 E-value=0.18 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 452
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.06 E-value=0.12 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...+.|.||+|+|||||.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5568899999999999999999976
No 453
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.04 E-value=0.12 Score=56.25 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||.+.||+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344568899999999999999999854
No 454
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.03 E-value=0.12 Score=54.27 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|.||.|+|||||.+.+++..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455568999999999999999999864
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.02 E-value=0.29 Score=49.08 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elgvpfi 394 (731)
++-|.|.|++|+||||+++.++..++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 456889999999999999999999876443
No 456
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.00 E-value=0.13 Score=58.36 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elgv 391 (731)
.+..|+|.|.+|+||||++++||..++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999999874
No 457
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.99 E-value=0.17 Score=46.24 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.+++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 458
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.93 E-value=0.18 Score=48.14 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
....|+|.|++|+|||+|++++.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999875
No 459
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.91 E-value=0.17 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 460
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.86 E-value=0.19 Score=47.26 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
+..|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999886
No 461
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=89.84 E-value=1.1 Score=49.28 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=33.0
Q ss_pred CcccccccCChHhHHHHHHHHHHhcChhHHhh-----hCCCCCCeEEEEcCCCCcHHHHH-HHHHH
Q 004770 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLA-KAVAG 387 (731)
Q Consensus 328 ~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~-----lg~~~pkgVLL~GPPGTGKT~LA-kAlA~ 387 (731)
..+|+++.-.++..+.|.+. -+..|..++. +-...++.+|+.+|+|+|||..+ -++..
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 34677776666665555431 1222221111 11124578999999999999764 34443
No 462
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.75 E-value=0.18 Score=46.57 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..|++.|++|+|||+|++++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999999998753
No 463
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.71 E-value=0.17 Score=56.59 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
.....-+.|.||+|+|||||+|.+++-.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4455669999999999999999999864
No 464
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.68 E-value=0.18 Score=46.73 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 465
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.65 E-value=0.17 Score=58.39 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=23.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeech
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el----gvpfi~is~s 399 (731)
.+++.||||||||+++..++..+ +.+++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 58899999999999877776543 4556555543
No 466
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.63 E-value=0.9 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
+.+++.+|+|+|||..+-..+-+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999876655543
No 467
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.61 E-value=0.19 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
-.|++.|++|+|||+|+.++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 359999999999999999998753
No 468
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.59 E-value=2.4 Score=46.61 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
+.+++.+|+|+|||..+-..+-+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999876665543
No 469
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=89.57 E-value=0.54 Score=58.06 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---gvpfi~is~ 398 (731)
+.+|+++|+|+|||+.+-..+-++ +...+.+..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 569999999999998765544433 455555543
No 470
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.54 E-value=0.2 Score=48.87 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...++|+|++|+|||+|+.+++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999875
No 471
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.52 E-value=0.099 Score=56.43 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
....-+.|.||+|+|||||.+.+|+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999854
No 472
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=89.51 E-value=0.52 Score=51.49 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCcccccccCChHhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCCcHHHH
Q 004770 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLL 381 (731)
Q Consensus 327 ~~vtf~DV~G~devK~~L~eiV~~Lk~p~~~~~lg---~~~pkgVLL~GPPGTGKT~L 381 (731)
+..+|+++.-.+.+.+.|.+. -+..|..++... ....+.+++.+|+|+|||..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 345788875555555544331 123332222211 12346799999999999983
No 473
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.50 E-value=0.2 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45999999999999999999874
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.49 E-value=0.2 Score=48.10 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
....|+|.|++|+|||+|+.++.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999865
No 475
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.46 E-value=0.2 Score=47.38 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..|++.|++|+|||+|+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998753
No 476
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.45 E-value=0.19 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999874
No 477
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.44 E-value=0.2 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..|+|.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999888754
No 478
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.43 E-value=0.19 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|++++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999875
No 479
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.38 E-value=0.2 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|++++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999874
No 480
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.37 E-value=0.2 Score=47.54 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|++++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
No 481
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.13 E-value=0.23 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|++++.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999974
No 482
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.10 E-value=0.17 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.|++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999874
No 483
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=89.10 E-value=0.58 Score=52.31 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.2
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 004770 365 PRGVLLVGLPGTGKTLLAK 383 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAk 383 (731)
++.+|+.+|+|+|||..+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4679999999999998643
No 484
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.08 E-value=0.23 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...++|+|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999875
No 485
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.04 E-value=0.23 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999875
No 486
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.02 E-value=0.27 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
...|++.|++|+|||+|++++....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998753
No 487
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.96 E-value=0.24 Score=46.00 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
+..|+|.|++|+|||+|+.++.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3469999999999999999998743
No 488
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.95 E-value=0.25 Score=47.28 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
.....|++.|++|+|||+|+.++...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34456999999999999999999753
No 489
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.89 E-value=0.22 Score=46.45 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q 004770 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (731)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~ 387 (731)
+.+..|++.|++|+|||+|+.++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999874
No 490
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.88 E-value=0.21 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999764
No 491
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.87 E-value=0.23 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 492
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=88.86 E-value=0.48 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCcHHHHH-HHHH
Q 004770 365 PRGVLLVGLPGTGKTLLA-KAVA 386 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LA-kAlA 386 (731)
.+.+|+.||+|+|||..+ -++.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999875 4343
No 493
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.84 E-value=0.23 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 004770 367 GVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~e 388 (731)
.|++.|++|+|||+|++++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 494
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.71 E-value=0.24 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..|+|.|++|+|||+|+.++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998753
No 495
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.62 E-value=0.24 Score=46.77 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|++++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999874
No 496
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.61 E-value=0.5 Score=50.57 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..-+.|+|+||+|||||..++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4458899999999999999999753
No 497
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.61 E-value=0.24 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999875
No 498
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.59 E-value=0.2 Score=47.10 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHh
Q 004770 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (731)
....|++.|++|+|||+|+.++.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4556999999999999999999864
No 499
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.59 E-value=1.3 Score=48.81 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (731)
..|+|+|.||+|||+|..++.+.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35999999999999999999763
No 500
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.57 E-value=0.4 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 004770 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (731)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (731)
..|+++|.||+|||+|..++.+.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 459999999999999999998764
Done!