BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004772
(731 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 98/168 (58%), Gaps = 5/168 (2%)
Query: 15 SKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAV 74
+KYDVFLSF G DT L L R+ I F DD +E + G SP + IE S
Sbjct: 7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDD-KELENGQRFSPELKSPIEVSRF 65
Query: 75 SIIIFSENYAYSTWCLDELVRILDCKKRNGQTVVPVFYKVSPPAVRKQRLSFGEAFVHHE 134
++++ SENYA S+WCLDELV I+D +K+ TV+P+FY V P VR Q E F H
Sbjct: 66 AVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHA 125
Query: 135 SNFSDKVQVQKWRDSLTQASNISGFYASRSFRNDAELVEKIAEDISKK 182
S D +V KWR +LT + +SG S +D++LV+KIA +IS K
Sbjct: 126 SR-EDPEKVLKWRQALTNFAQLSG---DCSGDDDSKLVDKIANEISNK 169
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 7/167 (4%)
Query: 211 KYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLIL 270
KYDVFLSF G +TR S L L R+ I F DD KE G SP + IE S
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDD-KELENGQRFSPELKSPIEVSRFA 66
Query: 271 IVIFSKDYASSKWCLDELVKILDCLIKNTGQI-VVPVFYRIDSSDVHKQKGSFRKAFVHH 329
+V+ S++YA+S WCLDELV I+D + G I V+P+FY ++ + V Q G + F H
Sbjct: 67 VVVVSENYAASSWCLDELVTIMD--FEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH 124
Query: 330 -ERNFPDKVQKWREALTKASSISEFFVVDPRNEAGDVEKIAQDISKK 375
R P+KV KWR+ALT + +S D +++ V+KIA +IS K
Sbjct: 125 ASREDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 211 KYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLIL 270
+Y+VFLSF G +TR L +LRR +I F DD+ E KG EI P + AI+ S I
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDD-ELLKGKEIGPNLLRAIDQSKIY 93
Query: 271 IVIFSKDYASSKWCLDELVKILDCLIKNTGQIVVPVFYRIDSSDVHKQKGSFRKAFVHHE 330
+ I S YA SKWCL EL +I+ ++ +I++P+FY +D SDV Q G ++KAF H
Sbjct: 94 VPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHA 153
Query: 331 RNFPDK-VQKWREALTKASSISEFFVVDPRNEAGDVEKIAQDI 372
F + +Q W++AL K + + + + +K++ DI
Sbjct: 154 NKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 4/165 (2%)
Query: 16 KYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVS 75
+Y+VFLSF G DT D L +LRR +I F DD+ E KG EI P + +AI+ S +
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDD-ELLKGKEIGPNLLRAIDQSKIY 93
Query: 76 IIIFSENYAYSTWCLDELVRILDCKKRNGQTVV-PVFYKVSPPAVRKQRLSFGEAFVHHE 134
+ I S YA S WCL EL I+ ++ + + ++ P+FY V P VR Q + +AF H
Sbjct: 94 VPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHA 153
Query: 135 SNFSDKVQVQKWRDSLTQASNISGFYASRSFRNDAELVEKIAEDI 179
+ F D +Q W+D+L + ++ G++ ++ + A + +K++ DI
Sbjct: 154 NKF-DGQTIQNWKDALKKVGDLKGWHIGKNDKQGA-IADKVSADI 196
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 145/356 (40%), Gaps = 55/356 (15%)
Query: 388 FVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ---ISGDFQGKCFMK 444
FV + I+ L G+ V I GM G GK+ +A+ + G F G
Sbjct: 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV 185
Query: 445 NVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRL------QQRKVLIVLHDV 498
+VG++ ++ +++ E+ P K RL + + L++L DV
Sbjct: 186 SVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 245
Query: 499 DDNSKSFAVCLDLFSPGSRIIITTRDKRLLYK-RGVQSVCEVK-GLKHNSALELFCRKAF 556
D + L F +I++TTRDK + G + V V+ L LE+ +
Sbjct: 246 WD-----SWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEIL---SL 297
Query: 557 RQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLHKL-----KLITDP 611
N + DL E + + G+PL + ++G +L + +W+ L +L K I
Sbjct: 298 FVNMKKADLPEQAHSIIKECKGSPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKS 356
Query: 612 NIY------KVLKISYDGLNWEEKEIFLDVACFFKGEDVDFVTRV-----QDDPTSMRNG 660
+ Y + + IS + L + K+ + D++ K DV T+V + + +
Sbjct: 357 SSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK--DVKVPTKVLCILWDMETEEVEDI 414
Query: 661 LNILVEKSLITISDN----RLQMHDM------------LQEIGKTIIRQ-ESFKEP 699
L V KSL+ N R +HD+ LQ++ K II Q + + +P
Sbjct: 415 LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQP 470
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 55/341 (16%)
Query: 407 GDVRIVGIWGMGGIGKTTIASVIFHQ---ISGDFQGKCFMKNVGEESSKMGVIHVRDEVI 463
G+ V I GM G GK+ +A+ + G F G +VG++ ++ +++
Sbjct: 151 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCT 210
Query: 464 SQVMGENIKIGTPTITPNIKKRL------QQRKVLIVLHDVDDNSKSFAVCLDLFSPGSR 517
E+ P K RL + + L++L DV D + L F +
Sbjct: 211 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-----SWVLKAFDSQCQ 265
Query: 518 IIITTRDKRLLYK-RGVQSVCEVK-GLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHY 575
I++TTRDK + G + V V+ L LE+ + N + DL E + +
Sbjct: 266 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEIL---SLFVNMKKADLPEQAHSIIKE 322
Query: 576 ANGNPLALQVLGSSLYQKSKEQWKDKLHKL-----KLITDPNIY------KVLKISYDGL 624
G+PL + ++G +L + +W+ L +L K I + Y + + IS + L
Sbjct: 323 CKGSPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 381
Query: 625 NWEEKEIFLDVACFFKGEDVDFVTRV-----QDDPTSMRNGLNILVEKSLITISDN---- 675
+ K+ + D++ K DV T+V + + + L V KSL+ N
Sbjct: 382 REDIKDYYTDLSILQK--DVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSF 439
Query: 676 RLQMHDM------------LQEIGKTIIRQ-ESFKEPGKRS 703
R +HD+ LQ++ K II Q + + +P S
Sbjct: 440 RYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLS 480
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 20/230 (8%)
Query: 407 GDVRIVGIWGMGGIGKTTIASVIFHQ---ISGDFQGKCFMKNVGEESSKMGVIHVRDEVI 463
G+ V I+GM G GK+ +A+ + G F G ++G++ ++ +++ +
Sbjct: 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204
Query: 464 SQVMGENIKIGTPTITPNIKKRL------QQRKVLIVLHDVDDNSKSFAVCLDLFSPGSR 517
E+ P K RL + + L++L DV D L F +
Sbjct: 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-----PWVLKAFDNQCQ 259
Query: 518 IIITTRDKRLLYK-RGVQSVCEVK-GLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHY 575
I++TTRDK + G + V V+ GL LE+ + N + DL + +
Sbjct: 260 ILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL---SLFVNMKKEDLPAEAHSIIKE 316
Query: 576 ANGNPLALQVLGSSLYQKSKEQWKDKLHKLKLITDPNIYKVLKISYDGLN 625
G+PL + ++G +L + +W L +L+ I K Y+ L+
Sbjct: 317 CKGSPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 365
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 11 FTAKSKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIE 70
T+ +D+F+S +D + + LA LR E++ DD + GD + ++ K +
Sbjct: 15 LTSAPPHDIFISHAWEDKADFV-EALAHTLRAAGAEVWYDDFSL-RPGDSLRRSIDKGLG 72
Query: 71 TSAVSIIIFSENYAYSTWCLDELVRILDCKKRNGQTVVPVFYKVS 115
+S I++ S ++ W EL + + ++P+++KVS
Sbjct: 73 SSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVS 117
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 206 FTAKCKYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIE 265
T+ +D+F+S E+ + LA LR E++ DD GD + ++ +
Sbjct: 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDD-FSLRPGDSLRRSIDKGLG 72
Query: 266 TSLILIVIFSKDYASSKWCLDELVKILDCLIKNTGQI-VVPVFYRIDSSDV 315
+S IV+ S + +W EL + ++++G+ ++P+++++ +V
Sbjct: 73 SSRFGIVVLSTHFFKKEWPQKELDGLFQ--LESSGRSRILPIWHKVSKDEV 121
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 20/230 (8%)
Query: 407 GDVRIVGIWGMGGIGKTTIASVIFHQ---ISGDFQGKCFMKNVGEESSKMGVIHVRDEVI 463
G+ V I+GM G GK+ +A+ + G F G ++G++ ++ +++ +
Sbjct: 152 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 211
Query: 464 SQVMGENIKIGTPTITPNIKKRL------QQRKVLIVLHDVDDNSKSFAVCLDLFSPGSR 517
E+ P K RL + + L++L DV D L F +
Sbjct: 212 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-----PWVLKAFDNQCQ 266
Query: 518 IIITTRDKRLLYK-RGVQSVCEVK-GLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHY 575
I++TT DK + G + V V+ GL LE+ + N + DL + +
Sbjct: 267 ILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEIL---SLFVNMKKEDLPAEAHSIIKE 323
Query: 576 ANGNPLALQVLGSSLYQKSKEQWKDKLHKLKLITDPNIYKVLKISYDGLN 625
G+PL + ++G +L + +W L +L+ I K Y+ L+
Sbjct: 324 CKGSPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 372
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 374 KKVEDMSDSTDLSGFVGLNSRIEKIKSL-LCLELGDVR---IVGIWGMGGIGKTTIASVI 429
K+V D+ S DL + I+K+ L ++ G+ + I+GI G GIGKTT A ++
Sbjct: 255 KEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARIL 314
Query: 430 FHQISGD 436
+I+ D
Sbjct: 315 VGEITAD 321
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 411 IVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGEN 470
I+G+ G G+GKTT+ ++ +I + N G+ +SK+G +DEV+ + G+
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEI---------IPNFGDPNSKVG----KDEVLKRFRGKE 73
Query: 471 I 471
I
Sbjct: 74 I 74
>pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|B Chain B, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|C Chain C, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|D Chain D, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|E Chain E, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|F Chain F, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|3MP3|A Chain A, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|B Chain B, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|C Chain C, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|D Chain D, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|E Chain E, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|F Chain F, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
Length = 298
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 649 RVQDDPTSMRNGLNILVEKSLITISDNRLQMHDMLQEIGKTIIRQESFKEPGKRSKLWDH 708
RV+ R+GL EK++++ + ++++ DML E G ++I SF P ++ DH
Sbjct: 5 RVKIVEVGPRDGLQ--NEKNIVS-TPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61
Query: 709 KDVYQVLKKNKQMN 722
+V + ++K +N
Sbjct: 62 TEVLKGIQKFPGIN 75
>pdb|3MP4|A Chain A, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|B Chain B, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|C Chain C, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|D Chain D, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|E Chain E, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|F Chain F, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP5|A Chain A, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|B Chain B, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|C Chain C, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|D Chain D, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|E Chain E, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|F Chain F, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
Length = 298
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 666 EKSLITISDNRLQMHDMLQEIGKTIIRQESFKEPGKRSKLWDHKDVYQVLKKNKQMN 722
EK++++ + ++++ DML E G ++I SF P ++ DH +V + ++K +N
Sbjct: 20 EKNIVS-TPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGIN 75
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 384 DLSGFVGLNSRIEKIKSL-LCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ 438
+L+ ++G + K L +E G + + +WG G GKTT+A VI + D +
Sbjct: 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE 79
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone
4-Phosphate Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone
4-Phosphate Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone
4-Phosphate Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone
4-Phosphate Synthase Gold Derivative
Length = 217
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 38 AALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSI 76
AALR + + +DDE +GD I PA + +E A++I
Sbjct: 21 AALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTI 59
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 233 AALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILI 271
AALR + + +DDE N+GD I PA + +E + I
Sbjct: 21 AALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTI 59
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone
4-Phosphate Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 38 AALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSI 76
AALR + + +DDE +GD I PA + +E A++I
Sbjct: 21 AALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTI 59
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 233 AALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILI 271
AALR + + +DDE N+GD I PA + +E + I
Sbjct: 21 AALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTI 59
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 412 VGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES 450
+G++G G+GKT + + H I+ + G VGE +
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERT 192
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 356 VDPRNEAGDVEKIA-QDISKKVEDMSDSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGI 414
VD + E G+ E+ A + E++S+S +L L + I K+ L+C VG+
Sbjct: 95 VDMKGEIGEEERWAIHRAAPSYEELSNSQEL-----LETGI-KVIDLMC-PFAKGGKVGL 147
Query: 415 WGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES 450
+G G+GKT + I+ + G VGE +
Sbjct: 148 FGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERT 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,508,568
Number of Sequences: 62578
Number of extensions: 839531
Number of successful extensions: 2370
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2333
Number of HSP's gapped (non-prelim): 45
length of query: 731
length of database: 14,973,337
effective HSP length: 106
effective length of query: 625
effective length of database: 8,340,069
effective search space: 5212543125
effective search space used: 5212543125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)