Query 004772
Match_columns 731
No_of_seqs 478 out of 4022
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 12:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.9E-87 4.1E-92 819.0 52.0 523 1-728 1-538 (1153)
2 PLN03194 putative disease resi 100.0 7.5E-46 1.6E-50 343.1 15.6 158 13-187 23-181 (187)
3 KOG4658 Apoptotic ATPase [Sign 100.0 3.4E-38 7.5E-43 366.9 25.6 299 389-693 161-497 (889)
4 PLN03194 putative disease resi 100.0 1.9E-36 4E-41 280.7 12.0 159 204-378 19-179 (187)
5 PF00931 NB-ARC: NB-ARC domain 100.0 2.2E-34 4.7E-39 302.4 16.6 261 391-655 1-280 (287)
6 PLN03210 Resistant to P. syrin 100.0 4.1E-32 8.8E-37 332.6 17.1 173 203-378 4-177 (1153)
7 PF01582 TIR: TIR domain; Int 99.9 3.3E-23 7.2E-28 192.7 3.6 132 19-151 1-140 (141)
8 smart00255 TIR Toll - interleu 99.8 5.5E-20 1.2E-24 171.2 12.0 137 16-155 1-139 (140)
9 smart00255 TIR Toll - interleu 99.7 2E-17 4.2E-22 154.0 10.0 134 211-347 1-137 (140)
10 PF01582 TIR: TIR domain; Int 99.7 3.8E-18 8.2E-23 158.6 3.6 130 214-345 1-140 (141)
11 PRK04841 transcriptional regul 99.7 2.6E-15 5.7E-20 182.9 28.2 295 380-694 8-335 (903)
12 PF13676 TIR_2: TIR domain; PD 99.5 2E-14 4.4E-19 125.7 4.8 90 214-314 1-90 (102)
13 COG2909 MalT ATP-dependent tra 99.5 3E-12 6.5E-17 143.0 22.4 297 380-695 13-342 (894)
14 PF13676 TIR_2: TIR domain; PD 99.5 2.2E-14 4.8E-19 125.5 3.1 87 19-113 1-87 (102)
15 COG3899 Predicted ATPase [Gene 99.4 4.4E-12 9.4E-17 149.7 18.3 320 388-720 2-407 (849)
16 PRK00411 cdc6 cell division co 99.4 3.1E-10 6.7E-15 124.8 27.9 284 379-673 23-358 (394)
17 TIGR02928 orc1/cdc6 family rep 99.3 1.4E-09 3E-14 118.3 27.6 282 381-673 10-350 (365)
18 TIGR00635 ruvB Holliday juncti 99.3 2.7E-10 5.8E-15 120.7 19.3 267 386-673 4-289 (305)
19 PF01637 Arch_ATPase: Archaeal 99.2 8.1E-11 1.7E-15 119.3 13.5 195 388-586 1-234 (234)
20 PRK00080 ruvB Holliday junctio 99.2 1.4E-10 3.1E-15 123.7 15.4 272 382-673 21-310 (328)
21 TIGR03015 pepcterm_ATPase puta 99.1 2.2E-09 4.7E-14 111.6 19.3 177 409-590 43-242 (269)
22 PF05729 NACHT: NACHT domain 99.0 1.9E-09 4.2E-14 102.9 12.8 141 410-555 1-163 (166)
23 COG3903 Predicted ATPase [Gene 99.0 5.3E-10 1.2E-14 116.5 8.2 279 408-695 13-318 (414)
24 COG2256 MGS1 ATPase related to 98.9 1.9E-08 4.2E-13 104.3 13.1 175 382-582 20-208 (436)
25 PRK13342 recombination factor 98.9 7.5E-08 1.6E-12 106.0 17.5 183 382-590 8-200 (413)
26 PRK06893 DNA replication initi 98.8 6.7E-08 1.5E-12 97.5 15.5 152 409-590 39-207 (229)
27 PTZ00112 origin recognition co 98.8 5.1E-07 1.1E-11 102.6 23.6 281 381-673 750-1086(1164)
28 TIGR03420 DnaA_homol_Hda DnaA 98.7 3.8E-07 8.2E-12 92.0 16.6 173 386-590 15-205 (226)
29 PF05496 RuvB_N: Holliday junc 98.7 3.3E-07 7.1E-12 89.3 15.0 180 381-591 19-226 (233)
30 PRK12402 replication factor C 98.7 3.8E-07 8.2E-12 98.1 16.0 198 383-588 12-228 (337)
31 PRK07471 DNA polymerase III su 98.6 4E-06 8.7E-11 90.0 21.9 198 381-586 14-238 (365)
32 PRK07003 DNA polymerase III su 98.6 1.6E-06 3.5E-11 98.2 19.0 194 382-587 12-222 (830)
33 PRK00440 rfc replication facto 98.6 2.2E-06 4.7E-11 91.4 19.2 185 383-587 14-204 (319)
34 PLN03025 replication factor C 98.6 1.6E-06 3.4E-11 92.3 17.6 184 382-585 9-199 (319)
35 PRK14960 DNA polymerase III su 98.6 2.2E-06 4.7E-11 96.2 18.9 192 382-585 11-218 (702)
36 PRK08903 DnaA regulatory inact 98.6 1E-06 2.2E-11 88.9 15.1 172 384-590 16-203 (227)
37 PRK14961 DNA polymerase III su 98.6 2.4E-06 5.1E-11 92.5 18.6 193 382-586 12-220 (363)
38 KOG3678 SARM protein (with ste 98.6 3.7E-07 8E-12 95.1 11.6 144 13-187 609-760 (832)
39 PRK04195 replication factor C 98.6 2.8E-06 6.2E-11 95.4 19.8 213 382-622 10-239 (482)
40 PRK08727 hypothetical protein; 98.6 1.7E-06 3.6E-11 87.6 16.2 170 385-586 18-204 (233)
41 PRK14963 DNA polymerase III su 98.6 3.7E-06 8E-11 94.0 20.3 189 382-585 10-216 (504)
42 PF00308 Bac_DnaA: Bacterial d 98.6 2.9E-06 6.2E-11 84.8 17.0 184 386-590 8-212 (219)
43 COG1474 CDC6 Cdc6-related prot 98.6 4.2E-05 9E-10 82.1 26.8 281 381-673 12-334 (366)
44 PRK14949 DNA polymerase III su 98.5 1.8E-06 4E-11 99.7 17.2 190 382-586 12-220 (944)
45 PF14516 AAA_35: AAA-like doma 98.5 1.8E-05 3.8E-10 84.5 23.0 279 382-686 7-328 (331)
46 PRK08084 DNA replication initi 98.5 2.1E-06 4.6E-11 86.9 15.3 152 409-590 45-213 (235)
47 PRK05642 DNA replication initi 98.5 3E-06 6.6E-11 85.7 16.3 152 409-590 45-212 (234)
48 PRK12323 DNA polymerase III su 98.5 7.6E-06 1.6E-10 91.7 20.5 197 382-586 12-225 (700)
49 PTZ00202 tuzin; Provisional 98.5 1.1E-05 2.4E-10 85.6 20.0 165 380-555 256-434 (550)
50 PF13191 AAA_16: AAA ATPase do 98.5 2.3E-07 5E-12 90.3 6.7 50 387-436 1-51 (185)
51 PRK08691 DNA polymerase III su 98.5 4.3E-06 9.2E-11 94.8 17.1 194 382-587 12-221 (709)
52 PRK09112 DNA polymerase III su 98.5 4E-06 8.6E-11 89.5 15.9 195 381-587 18-241 (351)
53 PRK14962 DNA polymerase III su 98.4 1.1E-05 2.5E-10 89.4 19.8 196 382-589 10-222 (472)
54 PRK13341 recombination factor 98.4 2.6E-06 5.6E-11 98.9 14.7 178 382-586 24-217 (725)
55 PRK05564 DNA polymerase III su 98.4 7.6E-06 1.7E-10 86.8 17.2 174 386-585 4-189 (313)
56 KOG2028 ATPase related to the 98.4 1.5E-06 3.2E-11 88.7 10.8 178 382-580 134-330 (554)
57 TIGR02397 dnaX_nterm DNA polym 98.4 1.3E-05 2.8E-10 86.8 19.1 184 382-588 10-220 (355)
58 PRK09087 hypothetical protein; 98.4 4.9E-06 1.1E-10 83.5 14.5 143 409-590 44-199 (226)
59 PRK14964 DNA polymerase III su 98.4 1.6E-05 3.4E-10 88.0 19.6 192 382-585 9-216 (491)
60 PRK07940 DNA polymerase III su 98.4 9.7E-06 2.1E-10 87.8 17.7 184 386-586 5-213 (394)
61 PF13401 AAA_22: AAA domain; P 98.4 5.3E-07 1.2E-11 82.4 6.9 110 409-524 4-125 (131)
62 PRK14957 DNA polymerase III su 98.4 9.6E-06 2.1E-10 90.9 18.0 181 382-586 12-221 (546)
63 PRK14087 dnaA chromosomal repl 98.4 7.6E-06 1.6E-10 90.6 17.0 165 409-590 141-323 (450)
64 PRK14951 DNA polymerase III su 98.4 1.5E-05 3.3E-10 90.5 19.5 198 382-586 12-225 (618)
65 PRK14958 DNA polymerase III su 98.4 1.5E-05 3.2E-10 89.4 19.1 194 382-587 12-221 (509)
66 PRK06645 DNA polymerase III su 98.4 1.9E-05 4.1E-10 88.0 19.1 189 382-585 17-228 (507)
67 PRK07994 DNA polymerase III su 98.4 8.2E-06 1.8E-10 92.9 16.5 193 382-586 12-220 (647)
68 PRK14956 DNA polymerase III su 98.4 8.1E-06 1.8E-10 89.2 15.3 189 382-585 14-221 (484)
69 cd00009 AAA The AAA+ (ATPases 98.3 2.9E-06 6.3E-11 78.6 10.5 54 389-444 1-54 (151)
70 COG2255 RuvB Holliday junction 98.3 1.7E-05 3.6E-10 79.1 15.9 258 382-677 22-316 (332)
71 PRK05896 DNA polymerase III su 98.3 1.1E-05 2.3E-10 90.7 16.1 193 382-586 12-221 (605)
72 PRK14955 DNA polymerase III su 98.3 2E-05 4.2E-10 86.4 17.8 199 382-586 12-228 (397)
73 TIGR01242 26Sp45 26S proteasom 98.3 7.1E-06 1.5E-10 89.0 13.8 171 385-580 121-328 (364)
74 PRK00149 dnaA chromosomal repl 98.3 7.3E-05 1.6E-09 83.5 22.2 159 409-588 148-324 (450)
75 PRK09111 DNA polymerase III su 98.3 2.8E-05 6E-10 88.6 18.7 199 382-587 20-234 (598)
76 TIGR00678 holB DNA polymerase 98.3 2.8E-05 6E-10 76.0 16.2 86 488-581 95-186 (188)
77 PRK14088 dnaA chromosomal repl 98.3 2.6E-05 5.7E-10 86.2 17.8 160 409-588 130-307 (440)
78 PRK07764 DNA polymerase III su 98.3 4.6E-05 9.9E-10 89.8 19.7 190 383-584 12-219 (824)
79 PRK14970 DNA polymerase III su 98.2 9E-05 1.9E-09 80.6 20.5 183 382-586 13-209 (367)
80 PRK14952 DNA polymerase III su 98.2 5.5E-05 1.2E-09 85.7 19.2 193 382-586 9-220 (584)
81 PRK14950 DNA polymerase III su 98.2 4.8E-05 1E-09 87.4 19.1 198 382-590 12-225 (585)
82 PRK14969 DNA polymerase III su 98.2 2.9E-05 6.2E-10 87.7 16.8 189 383-583 13-217 (527)
83 PRK14954 DNA polymerase III su 98.2 7.7E-05 1.7E-09 85.2 20.2 196 382-583 12-225 (620)
84 TIGR00362 DnaA chromosomal rep 98.2 3.6E-05 7.8E-10 84.8 17.0 159 409-588 136-312 (405)
85 KOG3678 SARM protein (with ste 98.2 2.1E-06 4.6E-11 89.6 6.5 92 210-309 611-710 (832)
86 PRK14953 DNA polymerase III su 98.2 0.00014 2.9E-09 81.3 21.3 195 382-588 12-222 (486)
87 PRK03992 proteasome-activating 98.2 1.5E-05 3.3E-10 86.9 12.3 170 385-579 130-336 (389)
88 PRK14959 DNA polymerase III su 98.1 7.9E-05 1.7E-09 84.3 17.7 197 382-590 12-225 (624)
89 PRK07133 DNA polymerase III su 98.1 7.2E-05 1.6E-09 85.8 17.3 190 382-585 14-218 (725)
90 PRK12422 chromosomal replicati 98.1 5.6E-05 1.2E-09 83.4 15.9 151 409-580 141-307 (445)
91 PRK06620 hypothetical protein; 98.1 2E-05 4.4E-10 78.3 11.3 139 410-589 45-192 (214)
92 TIGR03345 VI_ClpV1 type VI sec 98.1 3.5E-05 7.6E-10 91.8 15.1 152 382-554 183-362 (852)
93 PF13173 AAA_14: AAA domain 98.1 1.4E-05 3E-10 72.8 9.2 116 410-547 3-127 (128)
94 PRK14086 dnaA chromosomal repl 98.1 9.3E-05 2E-09 83.3 17.2 158 410-588 315-490 (617)
95 PRK08451 DNA polymerase III su 98.1 0.0001 2.2E-09 82.4 16.8 191 382-587 10-219 (535)
96 PRK14971 DNA polymerase III su 98.1 0.00024 5.2E-09 81.6 20.2 192 383-585 14-221 (614)
97 PHA02544 44 clamp loader, smal 98.1 7.5E-05 1.6E-09 79.5 15.2 148 382-553 17-171 (316)
98 PRK06305 DNA polymerase III su 98.0 0.00015 3.2E-09 80.4 17.4 193 382-585 13-221 (451)
99 PRK14948 DNA polymerase III su 98.0 0.00038 8.2E-09 80.0 21.1 197 382-588 12-224 (620)
100 PRK06647 DNA polymerase III su 98.0 0.00035 7.7E-09 79.3 19.5 192 382-586 12-220 (563)
101 TIGR02639 ClpA ATP-dependent C 98.0 6.9E-05 1.5E-09 88.6 14.2 156 382-555 178-358 (731)
102 PRK05707 DNA polymerase III su 98.0 0.00031 6.8E-09 74.4 17.5 163 409-586 22-203 (328)
103 CHL00095 clpC Clp protease ATP 98.0 4.3E-05 9.4E-10 91.4 12.3 151 386-554 179-353 (821)
104 PRK05563 DNA polymerase III su 97.9 0.0003 6.4E-09 80.2 17.8 191 382-584 12-218 (559)
105 TIGR02903 spore_lon_C ATP-depe 97.9 0.00013 2.8E-09 84.1 14.8 203 382-589 150-398 (615)
106 COG0593 DnaA ATPase involved i 97.9 0.00025 5.4E-09 76.1 15.2 152 408-579 112-279 (408)
107 TIGR02881 spore_V_K stage V sp 97.9 0.00011 2.4E-09 75.8 12.3 48 387-434 7-67 (261)
108 PRK10865 protein disaggregatio 97.9 9.3E-05 2E-09 88.5 13.1 52 382-435 174-225 (857)
109 PF08937 DUF1863: MTH538 TIR-l 97.9 1.9E-05 4.1E-10 72.0 5.7 91 17-112 1-107 (130)
110 PRK14965 DNA polymerase III su 97.9 0.00031 6.6E-09 80.5 16.6 192 382-586 12-221 (576)
111 PF08937 DUF1863: MTH538 TIR-l 97.9 1.9E-05 4.2E-10 72.0 5.6 89 212-307 1-106 (130)
112 TIGR03689 pup_AAA proteasome A 97.9 0.0003 6.6E-09 78.2 15.6 159 384-555 180-378 (512)
113 PRK07399 DNA polymerase III su 97.8 0.002 4.3E-08 68.0 20.2 191 386-588 4-223 (314)
114 PTZ00361 26 proteosome regulat 97.8 9.6E-05 2.1E-09 80.9 10.2 150 385-555 182-367 (438)
115 KOG2543 Origin recognition com 97.7 0.00052 1.1E-08 71.3 13.6 164 385-555 5-193 (438)
116 PTZ00454 26S protease regulato 97.7 0.00042 9.1E-09 75.4 13.8 179 384-586 143-358 (398)
117 COG3267 ExeA Type II secretory 97.7 0.0013 2.7E-08 65.2 15.5 176 407-588 49-247 (269)
118 CHL00176 ftsH cell division pr 97.7 0.00047 1E-08 79.3 14.5 177 386-586 183-395 (638)
119 KOG2227 Pre-initiation complex 97.7 0.00094 2E-08 71.3 15.4 168 384-555 148-338 (529)
120 PRK08116 hypothetical protein; 97.7 0.00028 6.2E-09 72.7 11.2 99 410-524 115-220 (268)
121 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00046 1E-08 82.9 14.5 155 382-554 169-348 (852)
122 PRK09376 rho transcription ter 97.7 9E-05 1.9E-09 78.5 7.4 92 409-502 169-269 (416)
123 TIGR01241 FtsH_fam ATP-depende 97.7 0.0005 1.1E-08 77.7 14.1 180 384-587 53-268 (495)
124 COG1222 RPT1 ATP-dependent 26S 97.7 0.00082 1.8E-08 69.4 13.6 146 388-555 153-335 (406)
125 PRK10536 hypothetical protein; 97.6 0.00038 8.2E-09 69.9 11.0 136 386-525 55-213 (262)
126 PRK08769 DNA polymerase III su 97.6 0.0024 5.3E-08 67.2 17.5 171 394-586 12-208 (319)
127 PF05621 TniB: Bacterial TniB 97.6 0.0011 2.4E-08 68.0 14.3 188 393-587 44-262 (302)
128 PRK11034 clpA ATP-dependent Cl 97.6 0.00043 9.3E-09 81.1 12.9 152 386-555 186-362 (758)
129 cd01128 rho_factor Transcripti 97.6 0.00012 2.5E-09 74.3 7.2 92 409-502 16-116 (249)
130 KOG0989 Replication factor C, 97.6 0.00056 1.2E-08 69.2 11.6 179 382-581 32-225 (346)
131 TIGR02880 cbbX_cfxQ probable R 97.6 0.0021 4.5E-08 67.0 16.3 125 411-555 60-208 (284)
132 PF10443 RNA12: RNA12 protein; 97.5 0.015 3.3E-07 62.4 21.8 177 490-673 149-369 (431)
133 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0011 2.3E-08 73.9 13.5 151 386-557 228-407 (489)
134 PRK08058 DNA polymerase III su 97.5 0.0027 5.9E-08 67.7 15.9 155 387-554 6-181 (329)
135 PF05673 DUF815: Protein of un 97.5 0.0062 1.3E-07 60.6 16.7 56 382-437 23-80 (249)
136 TIGR00767 rho transcription te 97.5 0.00036 7.8E-09 74.4 8.3 92 409-502 168-268 (415)
137 smart00382 AAA ATPases associa 97.4 0.00046 1E-08 63.1 7.9 34 410-443 3-36 (148)
138 PRK12377 putative replication 97.4 0.00076 1.6E-08 68.4 9.7 36 409-444 101-136 (248)
139 PRK06871 DNA polymerase III su 97.4 0.0088 1.9E-07 63.1 17.9 172 395-583 11-200 (325)
140 PRK07993 DNA polymerase III su 97.4 0.0059 1.3E-07 65.0 16.8 173 394-583 10-201 (334)
141 PRK08181 transposase; Validate 97.4 0.0009 1.9E-08 68.7 10.1 35 410-444 107-141 (269)
142 CHL00181 cbbX CbbX; Provisiona 97.4 0.0078 1.7E-07 62.7 16.8 128 410-556 60-210 (287)
143 COG2812 DnaX DNA polymerase II 97.3 0.0014 3E-08 72.6 11.4 187 383-581 13-215 (515)
144 KOG0741 AAA+-type ATPase [Post 97.3 0.0048 1E-07 66.7 14.8 128 408-555 537-686 (744)
145 TIGR01243 CDC48 AAA family ATP 97.3 0.0019 4.2E-08 76.6 13.5 172 385-580 177-381 (733)
146 PF08357 SEFIR: SEFIR domain; 97.3 0.00023 4.9E-09 66.8 4.4 65 213-278 2-70 (150)
147 PRK07952 DNA replication prote 97.3 0.0017 3.8E-08 65.6 10.9 90 395-501 85-174 (244)
148 PF00004 AAA: ATPase family as 97.3 0.00022 4.7E-09 64.9 4.1 23 412-434 1-23 (132)
149 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0054 1.2E-07 63.2 14.8 37 394-434 10-46 (262)
150 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0018 3.8E-08 71.1 11.1 97 385-502 189-295 (802)
151 PRK06090 DNA polymerase III su 97.3 0.028 6.2E-07 59.1 19.9 171 395-586 12-201 (319)
152 TIGR00602 rad24 checkpoint pro 97.3 0.0013 2.8E-08 75.2 10.5 53 382-434 80-135 (637)
153 KOG2228 Origin recognition com 97.2 0.0037 8.1E-08 64.1 12.2 169 386-555 24-219 (408)
154 PLN00020 ribulose bisphosphate 97.2 0.0052 1.1E-07 64.7 13.4 31 407-437 146-176 (413)
155 PRK06526 transposase; Provisio 97.2 0.00076 1.6E-08 68.8 7.3 35 409-443 98-132 (254)
156 PF01695 IstB_IS21: IstB-like 97.2 0.00042 9E-09 66.8 5.0 36 409-444 47-82 (178)
157 TIGR02639 ClpA ATP-dependent C 97.2 0.0052 1.1E-07 72.9 14.8 49 386-434 454-509 (731)
158 TIGR03346 chaperone_ClpB ATP-d 97.2 0.013 2.8E-07 70.7 18.3 51 386-436 565-622 (852)
159 PRK11331 5-methylcytosine-spec 97.2 0.0012 2.5E-08 71.8 8.4 105 386-502 175-285 (459)
160 COG0466 Lon ATP-dependent Lon 97.2 0.0026 5.7E-08 71.4 11.2 155 386-556 323-509 (782)
161 PRK09183 transposase/IS protei 97.2 0.0017 3.7E-08 66.7 9.1 35 410-444 103-137 (259)
162 PF13177 DNA_pol3_delta2: DNA 97.2 0.0067 1.4E-07 57.6 12.5 143 390-543 1-162 (162)
163 TIGR01243 CDC48 AAA family ATP 97.1 0.0049 1.1E-07 73.3 14.2 177 386-586 453-664 (733)
164 PRK06964 DNA polymerase III su 97.1 0.06 1.3E-06 57.3 20.9 88 489-586 132-225 (342)
165 KOG1514 Origin recognition com 97.1 0.014 3E-07 65.6 16.1 200 384-590 394-625 (767)
166 PRK06835 DNA replication prote 97.1 0.0018 3.9E-08 68.6 9.1 35 410-444 184-218 (329)
167 COG1484 DnaC DNA replication p 97.1 0.002 4.4E-08 65.8 9.2 75 408-500 104-178 (254)
168 PF02562 PhoH: PhoH-like prote 97.1 0.0012 2.6E-08 64.5 7.1 127 391-524 5-155 (205)
169 PRK06921 hypothetical protein; 97.1 0.00082 1.8E-08 69.2 6.2 36 409-444 117-153 (266)
170 COG0470 HolB ATPase involved i 97.1 0.0039 8.4E-08 66.5 11.7 143 387-548 2-174 (325)
171 PRK10865 protein disaggregatio 97.1 0.0078 1.7E-07 72.3 14.8 50 386-435 568-624 (857)
172 PRK08939 primosomal protein Dn 97.1 0.0033 7.1E-08 66.1 10.3 55 390-444 135-191 (306)
173 PRK13531 regulatory ATPase Rav 97.0 0.0028 6.1E-08 69.5 9.5 46 386-435 20-65 (498)
174 TIGR02902 spore_lonB ATP-depen 97.0 0.0049 1.1E-07 70.0 11.8 48 384-433 63-110 (531)
175 KOG0735 AAA+-type ATPase [Post 97.0 0.0089 1.9E-07 67.0 13.2 159 409-587 431-617 (952)
176 TIGR00763 lon ATP-dependent pr 97.0 0.0041 8.9E-08 74.2 11.5 52 386-437 320-375 (775)
177 PF07693 KAP_NTPase: KAP famil 97.0 0.028 6.1E-07 59.9 16.9 45 392-436 2-47 (325)
178 PRK04132 replication factor C 97.0 0.028 6.1E-07 66.3 17.7 155 414-588 569-733 (846)
179 COG1373 Predicted ATPase (AAA+ 96.9 0.015 3.2E-07 63.7 14.4 162 391-585 22-191 (398)
180 PRK11034 clpA ATP-dependent Cl 96.8 0.011 2.5E-07 69.4 13.2 49 386-434 458-513 (758)
181 KOG0744 AAA+-type ATPase [Post 96.8 0.0076 1.7E-07 61.4 10.0 35 409-443 177-215 (423)
182 COG0542 clpA ATP-binding subun 96.8 0.0065 1.4E-07 70.2 10.7 151 386-554 170-345 (786)
183 PRK07261 topology modulation p 96.8 0.0045 9.8E-08 59.3 8.2 23 411-433 2-24 (171)
184 PF14532 Sigma54_activ_2: Sigm 96.8 0.0018 4E-08 59.6 5.3 45 389-433 1-45 (138)
185 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0013 2.8E-08 69.5 4.7 49 387-435 52-104 (361)
186 COG0542 clpA ATP-binding subun 96.8 0.007 1.5E-07 69.9 10.7 107 386-502 491-606 (786)
187 PF03215 Rad17: Rad17 cell cyc 96.8 0.011 2.3E-07 66.5 12.0 59 384-444 17-78 (519)
188 PRK09361 radB DNA repair and r 96.8 0.0036 7.8E-08 63.0 7.4 47 398-444 12-58 (225)
189 PF07728 AAA_5: AAA domain (dy 96.7 0.00052 1.1E-08 63.4 1.1 22 412-433 2-23 (139)
190 PF13207 AAA_17: AAA domain; P 96.7 0.0012 2.7E-08 59.1 3.4 23 411-433 1-23 (121)
191 PRK10787 DNA-binding ATP-depen 96.7 0.0069 1.5E-07 71.7 10.5 52 386-437 322-377 (784)
192 KOG2004 Mitochondrial ATP-depe 96.7 0.0096 2.1E-07 66.8 10.7 155 386-556 411-597 (906)
193 PF00448 SRP54: SRP54-type pro 96.7 0.0043 9.3E-08 60.8 7.4 87 409-498 1-92 (196)
194 PRK04296 thymidine kinase; Pro 96.7 0.0027 5.8E-08 62.0 5.9 110 410-526 3-117 (190)
195 CHL00095 clpC Clp protease ATP 96.7 0.009 2E-07 71.7 11.5 108 386-502 509-624 (821)
196 PRK08699 DNA polymerase III su 96.7 0.018 3.9E-07 61.1 12.4 84 490-583 114-203 (325)
197 TIGR01817 nifA Nif-specific re 96.7 0.019 4.1E-07 65.8 13.5 50 384-433 194-243 (534)
198 PRK06696 uridine kinase; Valid 96.7 0.0031 6.6E-08 63.4 6.2 46 391-436 3-49 (223)
199 PRK08118 topology modulation p 96.7 0.0018 4E-08 61.7 4.2 32 411-442 3-37 (167)
200 PRK12608 transcription termina 96.7 0.0069 1.5E-07 64.4 8.8 103 397-502 122-233 (380)
201 cd01394 radB RadB. The archaea 96.6 0.0086 1.9E-07 59.9 9.2 48 397-444 7-54 (218)
202 KOG0991 Replication factor C, 96.6 0.019 4.1E-07 55.9 10.8 50 384-435 25-74 (333)
203 PF04665 Pox_A32: Poxvirus A32 96.6 0.0021 4.6E-08 64.3 4.5 35 410-444 14-48 (241)
204 TIGR02237 recomb_radB DNA repa 96.6 0.0068 1.5E-07 60.2 8.3 43 402-444 5-47 (209)
205 PHA02244 ATPase-like protein 96.6 0.0084 1.8E-07 63.5 9.1 50 386-435 96-145 (383)
206 TIGR03345 VI_ClpV1 type VI sec 96.6 0.012 2.6E-07 70.6 11.5 50 386-435 566-622 (852)
207 PRK07667 uridine kinase; Provi 96.6 0.0041 8.9E-08 60.9 6.4 42 395-436 3-44 (193)
208 PF00158 Sigma54_activat: Sigm 96.6 0.015 3.2E-07 55.5 9.9 45 388-432 1-45 (168)
209 cd01120 RecA-like_NTPases RecA 96.6 0.0046 9.9E-08 58.3 6.4 34 411-444 1-34 (165)
210 COG1223 Predicted ATPase (AAA+ 96.6 0.015 3.3E-07 57.5 9.8 148 386-555 121-297 (368)
211 PRK11608 pspF phage shock prot 96.5 0.066 1.4E-06 57.1 15.6 47 386-432 6-52 (326)
212 cd01131 PilT Pilus retraction 96.5 0.0068 1.5E-07 59.6 7.5 109 410-527 2-111 (198)
213 TIGR02974 phageshock_pspF psp 96.5 0.026 5.7E-07 60.1 12.3 46 388-433 1-46 (329)
214 cd01133 F1-ATPase_beta F1 ATP 96.5 0.0074 1.6E-07 61.7 7.7 92 409-502 69-176 (274)
215 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.03 6.5E-07 52.5 11.0 114 410-525 3-138 (159)
216 KOG0730 AAA+-type ATPase [Post 96.5 0.023 5.1E-07 63.4 11.8 147 388-555 436-615 (693)
217 PRK05022 anaerobic nitric oxid 96.5 0.068 1.5E-06 60.7 16.2 50 385-434 186-235 (509)
218 PRK15429 formate hydrogenlyase 96.5 0.068 1.5E-06 63.2 16.6 48 386-433 376-423 (686)
219 PF08357 SEFIR: SEFIR domain; 96.5 0.012 2.6E-07 55.1 8.3 64 18-82 2-69 (150)
220 PRK05541 adenylylsulfate kinas 96.4 0.008 1.7E-07 57.9 7.1 36 409-444 7-42 (176)
221 PHA00729 NTP-binding motif con 96.4 0.019 4.1E-07 57.0 9.6 26 409-434 17-42 (226)
222 PF01583 APS_kinase: Adenylyls 96.4 0.0046 1E-07 57.6 5.0 36 409-444 2-37 (156)
223 COG1618 Predicted nucleotide k 96.4 0.0034 7.4E-08 57.7 3.9 33 410-442 6-39 (179)
224 cd01121 Sms Sms (bacterial rad 96.4 0.012 2.5E-07 63.6 8.7 49 396-444 69-117 (372)
225 COG2607 Predicted ATPase (AAA+ 96.4 0.044 9.5E-07 53.9 11.4 56 384-439 58-115 (287)
226 cd01393 recA_like RecA is a b 96.3 0.017 3.7E-07 58.1 9.1 48 397-444 7-60 (226)
227 PRK06067 flagellar accessory p 96.3 0.014 3E-07 59.1 8.5 48 397-444 13-60 (234)
228 PRK00771 signal recognition pa 96.3 0.058 1.3E-06 59.4 13.7 36 408-443 94-129 (437)
229 KOG0733 Nuclear AAA ATPase (VC 96.3 0.034 7.5E-07 61.4 11.5 126 409-556 545-693 (802)
230 KOG3928 Mitochondrial ribosome 96.2 0.074 1.6E-06 56.3 12.9 58 533-590 402-460 (461)
231 PF13604 AAA_30: AAA domain; P 96.1 0.007 1.5E-07 59.4 5.0 35 409-443 18-52 (196)
232 COG0464 SpoVK ATPases of the A 96.1 0.029 6.3E-07 63.6 10.7 128 408-556 275-424 (494)
233 PRK15455 PrkA family serine pr 96.1 0.0067 1.5E-07 67.5 4.9 50 387-436 77-130 (644)
234 TIGR00416 sms DNA repair prote 96.1 0.028 6E-07 62.5 9.8 50 395-444 80-129 (454)
235 COG1066 Sms Predicted ATP-depe 96.1 0.026 5.5E-07 59.9 8.8 98 396-501 80-180 (456)
236 KOG0731 AAA+-type ATPase conta 96.0 0.079 1.7E-06 61.1 13.4 175 386-583 311-521 (774)
237 PRK11889 flhF flagellar biosyn 96.0 0.052 1.1E-06 58.1 11.1 36 409-444 241-276 (436)
238 PRK10733 hflB ATP-dependent me 96.0 0.053 1.1E-06 63.2 12.3 125 410-555 186-335 (644)
239 KOG2035 Replication factor C, 96.0 0.03 6.4E-07 56.1 8.4 205 386-605 13-258 (351)
240 KOG1970 Checkpoint RAD17-RFC c 96.0 0.068 1.5E-06 58.6 11.7 47 388-434 84-135 (634)
241 COG4088 Predicted nucleotide k 95.9 0.014 3E-07 55.9 5.6 28 410-437 2-29 (261)
242 cd00983 recA RecA is a bacter 95.9 0.018 4E-07 60.5 7.0 47 398-444 43-90 (325)
243 COG1875 NYN ribonuclease and A 95.9 0.049 1.1E-06 56.8 9.7 130 387-523 225-386 (436)
244 PF13238 AAA_18: AAA domain; P 95.9 0.0065 1.4E-07 54.8 3.2 22 412-433 1-22 (129)
245 PRK14722 flhF flagellar biosyn 95.9 0.076 1.7E-06 57.0 11.6 36 409-444 137-174 (374)
246 TIGR02012 tigrfam_recA protein 95.9 0.019 4E-07 60.4 6.8 48 397-444 42-90 (321)
247 PF00485 PRK: Phosphoribulokin 95.8 0.0073 1.6E-07 59.2 3.6 26 411-436 1-26 (194)
248 PRK11823 DNA repair protein Ra 95.8 0.031 6.7E-07 62.1 8.9 49 396-444 67-115 (446)
249 PRK10820 DNA-binding transcrip 95.8 0.14 3.1E-06 58.2 14.5 48 385-432 203-250 (520)
250 KOG0734 AAA+-type ATPase conta 95.8 0.038 8.2E-07 60.1 8.8 47 387-433 305-361 (752)
251 KOG0735 AAA+-type ATPase [Post 95.8 0.083 1.8E-06 59.6 11.7 173 386-582 667-872 (952)
252 PF10236 DAP3: Mitochondrial r 95.8 0.32 6.9E-06 51.3 15.8 48 536-583 258-306 (309)
253 PF08433 KTI12: Chromatin asso 95.8 0.022 4.9E-07 58.6 6.9 34 410-443 2-35 (270)
254 cd01858 NGP_1 NGP-1. Autoanti 95.7 0.12 2.6E-06 48.7 11.2 42 390-431 82-124 (157)
255 PRK10923 glnG nitrogen regulat 95.7 0.15 3.2E-06 57.5 13.9 47 386-432 138-184 (469)
256 cd01124 KaiC KaiC is a circadi 95.7 0.037 7.9E-07 53.7 7.9 33 412-444 2-34 (187)
257 KOG0739 AAA+-type ATPase [Post 95.7 0.086 1.9E-06 53.3 10.2 94 386-501 133-237 (439)
258 PRK09354 recA recombinase A; P 95.7 0.028 6E-07 59.6 7.3 48 397-444 47-95 (349)
259 KOG0729 26S proteasome regulat 95.7 0.029 6.2E-07 55.6 6.7 53 387-444 178-241 (435)
260 PRK11388 DNA-binding transcrip 95.6 0.19 4.2E-06 58.9 14.9 49 385-433 324-372 (638)
261 PRK06762 hypothetical protein; 95.6 0.01 2.3E-07 56.5 3.5 25 409-433 2-26 (166)
262 PRK07132 DNA polymerase III su 95.6 3 6.4E-05 43.7 21.9 164 395-585 5-184 (299)
263 PF03308 ArgK: ArgK protein; 95.6 0.026 5.7E-07 56.6 6.2 47 394-440 14-60 (266)
264 cd03115 SRP The signal recogni 95.5 0.056 1.2E-06 51.8 8.4 34 411-444 2-35 (173)
265 PF13671 AAA_33: AAA domain; P 95.5 0.011 2.3E-07 54.6 3.3 24 411-434 1-24 (143)
266 PF07726 AAA_3: ATPase family 95.5 0.0092 2E-07 53.2 2.6 29 412-440 2-30 (131)
267 PTZ00301 uridine kinase; Provi 95.5 0.012 2.5E-07 58.3 3.6 29 409-437 3-31 (210)
268 TIGR01420 pilT_fam pilus retra 95.5 0.036 7.8E-07 59.5 7.7 108 409-524 122-229 (343)
269 TIGR03574 selen_PSTK L-seryl-t 95.5 0.017 3.6E-07 59.2 4.9 26 411-436 1-26 (249)
270 PRK14974 cell division protein 95.5 0.12 2.5E-06 55.0 11.3 29 408-436 139-167 (336)
271 PRK06217 hypothetical protein; 95.5 0.053 1.2E-06 52.5 8.2 24 411-434 3-26 (183)
272 TIGR00708 cobA cob(I)alamin ad 95.5 0.11 2.5E-06 49.2 10.0 116 409-525 5-140 (173)
273 cd02019 NK Nucleoside/nucleoti 95.5 0.011 2.4E-07 47.1 2.8 23 411-433 1-23 (69)
274 PRK08233 hypothetical protein; 95.5 0.011 2.4E-07 57.1 3.3 26 409-434 3-28 (182)
275 PRK05480 uridine/cytidine kina 95.5 0.013 2.8E-07 58.2 3.9 27 407-433 4-30 (209)
276 KOG0728 26S proteasome regulat 95.4 0.26 5.7E-06 48.6 12.4 44 390-433 151-205 (404)
277 KOG1969 DNA replication checkp 95.4 0.044 9.5E-07 61.9 8.0 26 408-433 325-350 (877)
278 KOG0743 AAA+-type ATPase [Post 95.4 0.19 4E-06 54.2 12.4 26 409-434 235-260 (457)
279 COG0465 HflB ATP-dependent Zn 95.4 0.072 1.6E-06 60.1 9.8 146 386-555 150-333 (596)
280 KOG0652 26S proteasome regulat 95.4 0.29 6.3E-06 48.6 12.7 52 386-437 171-233 (424)
281 PRK10463 hydrogenase nickel in 95.4 0.018 3.9E-07 59.3 4.7 33 407-439 102-134 (290)
282 PF00910 RNA_helicase: RNA hel 95.4 0.0094 2E-07 52.2 2.3 26 412-437 1-26 (107)
283 COG0468 RecA RecA/RadA recombi 95.4 0.055 1.2E-06 55.6 8.1 45 400-444 51-95 (279)
284 TIGR02329 propionate_PrpR prop 95.4 0.28 6E-06 55.6 14.4 47 386-432 212-258 (526)
285 TIGR00064 ftsY signal recognit 95.3 0.052 1.1E-06 56.1 7.8 38 407-444 70-107 (272)
286 TIGR03499 FlhF flagellar biosy 95.3 0.055 1.2E-06 56.3 8.1 37 408-444 193-231 (282)
287 TIGR00150 HI0065_YjeE ATPase, 95.3 0.024 5.3E-07 51.4 4.7 42 393-434 6-47 (133)
288 COG0529 CysC Adenylylsulfate k 95.3 0.023 5E-07 53.2 4.5 36 408-443 22-57 (197)
289 TIGR02655 circ_KaiC circadian 95.3 0.028 6E-07 63.3 6.2 50 395-444 249-298 (484)
290 PRK09270 nucleoside triphospha 95.3 0.026 5.6E-07 56.9 5.4 32 406-437 30-61 (229)
291 cd03247 ABCC_cytochrome_bd The 95.3 0.068 1.5E-06 51.5 8.1 121 409-539 28-169 (178)
292 PRK00131 aroK shikimate kinase 95.2 0.015 3.3E-07 55.6 3.4 26 409-434 4-29 (175)
293 PRK04040 adenylate kinase; Pro 95.2 0.018 4E-07 56.0 3.9 26 409-434 2-27 (188)
294 COG0467 RAD55 RecA-superfamily 95.2 0.047 1E-06 56.2 7.1 45 400-444 14-58 (260)
295 PRK12726 flagellar biosynthesi 95.2 0.072 1.6E-06 56.8 8.4 37 408-444 205-241 (407)
296 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.077 1.7E-06 49.2 7.9 100 409-529 26-131 (144)
297 cd01857 HSR1_MMR1 HSR1/MMR1. 95.2 0.23 4.9E-06 45.8 11.0 51 258-311 3-53 (141)
298 cd03228 ABCC_MRP_Like The MRP 95.2 0.1 2.2E-06 50.0 8.9 125 409-539 28-167 (171)
299 PRK15115 response regulator Gl 95.2 1.4 3E-05 49.3 19.4 47 387-433 135-181 (444)
300 PRK03839 putative kinase; Prov 95.2 0.016 3.5E-07 56.0 3.3 24 411-434 2-25 (180)
301 COG0572 Udk Uridine kinase [Nu 95.1 0.025 5.5E-07 55.4 4.4 29 408-436 7-35 (218)
302 PRK00889 adenylylsulfate kinas 95.1 0.028 6E-07 54.1 4.7 35 409-443 4-38 (175)
303 PF08423 Rad51: Rad51; InterP 95.1 0.035 7.5E-07 56.9 5.7 37 397-433 26-62 (256)
304 TIGR00235 udk uridine kinase. 95.1 0.022 4.7E-07 56.5 4.1 27 408-434 5-31 (207)
305 cd01129 PulE-GspE PulE/GspE Th 95.1 0.14 2.9E-06 52.8 10.0 95 394-502 68-162 (264)
306 KOG0727 26S proteasome regulat 95.1 0.13 2.9E-06 50.7 9.1 31 407-437 187-217 (408)
307 PRK06547 hypothetical protein; 95.0 0.021 4.6E-07 54.6 3.7 27 407-433 13-39 (172)
308 PRK10867 signal recognition pa 95.0 0.098 2.1E-06 57.5 9.2 29 408-436 99-127 (433)
309 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.066 1.4E-06 54.3 7.4 48 397-444 9-56 (237)
310 cd02027 APSK Adenosine 5'-phos 95.0 0.042 9.1E-07 51.3 5.5 24 411-434 1-24 (149)
311 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.043 9.2E-07 54.6 5.8 23 409-431 29-51 (213)
312 COG1703 ArgK Putative periplas 95.0 0.037 8.1E-07 56.3 5.3 49 395-443 37-85 (323)
313 PRK00625 shikimate kinase; Pro 95.0 0.02 4.2E-07 54.9 3.2 24 411-434 2-25 (173)
314 TIGR01360 aden_kin_iso1 adenyl 94.9 0.021 4.5E-07 55.5 3.4 25 409-433 3-27 (188)
315 cd00227 CPT Chloramphenicol (C 94.9 0.021 4.6E-07 54.9 3.4 25 410-434 3-27 (175)
316 cd02028 UMPK_like Uridine mono 94.9 0.028 6E-07 54.3 4.2 26 411-436 1-26 (179)
317 COG4608 AppF ABC-type oligopep 94.9 0.084 1.8E-06 53.3 7.6 122 409-531 39-176 (268)
318 PRK10416 signal recognition pa 94.9 0.086 1.9E-06 55.7 8.0 36 408-443 113-148 (318)
319 KOG1051 Chaperone HSP104 and r 94.9 0.16 3.4E-06 59.9 10.7 104 387-502 563-673 (898)
320 cd03238 ABC_UvrA The excision 94.8 0.2 4.4E-06 48.1 9.8 23 409-431 21-43 (176)
321 cd03214 ABC_Iron-Siderophores_ 94.8 0.082 1.8E-06 51.1 7.2 119 409-528 25-161 (180)
322 PRK03846 adenylylsulfate kinas 94.8 0.039 8.4E-07 54.3 4.9 37 408-444 23-59 (198)
323 PF00406 ADK: Adenylate kinase 94.8 0.054 1.2E-06 50.6 5.7 20 414-433 1-20 (151)
324 COG1102 Cmk Cytidylate kinase 94.8 0.023 4.9E-07 52.4 2.9 25 411-435 2-26 (179)
325 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.04 8.7E-07 56.6 5.1 37 408-444 35-71 (259)
326 PF10137 TIR-like: Predicted n 94.7 0.083 1.8E-06 47.3 6.3 61 18-82 1-61 (125)
327 PRK05703 flhF flagellar biosyn 94.7 0.13 2.9E-06 56.6 9.3 36 409-444 221-258 (424)
328 cd03223 ABCD_peroxisomal_ALDP 94.7 0.14 2.9E-06 48.8 8.3 25 409-433 27-51 (166)
329 KOG0736 Peroxisome assembly fa 94.7 0.58 1.3E-05 53.6 14.1 95 386-502 672-777 (953)
330 PRK12723 flagellar biosynthesi 94.7 0.12 2.5E-06 56.1 8.6 26 409-434 174-199 (388)
331 PRK05439 pantothenate kinase; 94.7 0.041 9E-07 57.5 5.0 30 406-435 83-112 (311)
332 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.022 4.8E-07 55.2 2.7 23 411-433 1-23 (183)
333 CHL00206 ycf2 Ycf2; Provisiona 94.6 0.28 6.1E-06 61.8 12.4 28 407-434 1628-1655(2281)
334 TIGR00959 ffh signal recogniti 94.6 0.26 5.5E-06 54.2 11.1 27 408-434 98-124 (428)
335 COG1419 FlhF Flagellar GTP-bin 94.6 0.14 3.1E-06 54.8 8.7 36 409-444 203-240 (407)
336 cd03216 ABC_Carb_Monos_I This 94.6 0.077 1.7E-06 50.3 6.3 114 409-529 26-146 (163)
337 PRK12727 flagellar biosynthesi 94.6 0.12 2.5E-06 57.6 8.4 28 409-436 350-377 (559)
338 cd03222 ABC_RNaseL_inhibitor T 94.6 0.16 3.5E-06 48.8 8.4 102 409-529 25-136 (177)
339 PRK10875 recD exonuclease V su 94.6 0.14 2.9E-06 59.1 9.2 112 409-524 167-301 (615)
340 PF03969 AFG1_ATPase: AFG1-lik 94.5 0.082 1.8E-06 56.8 7.0 101 408-523 61-166 (362)
341 cd00544 CobU Adenosylcobinamid 94.5 0.14 3E-06 48.9 7.8 79 412-498 2-82 (169)
342 PRK13947 shikimate kinase; Pro 94.5 0.028 6E-07 53.8 3.1 27 411-437 3-29 (171)
343 TIGR01425 SRP54_euk signal rec 94.5 0.16 3.5E-06 55.5 9.3 36 408-443 99-134 (429)
344 PF10137 TIR-like: Predicted n 94.5 0.065 1.4E-06 48.0 5.2 61 213-277 1-61 (125)
345 COG3910 Predicted ATPase [Gene 94.5 0.33 7.2E-06 46.1 9.9 24 409-432 37-60 (233)
346 COG3640 CooC CO dehydrogenase 94.5 0.13 2.8E-06 50.6 7.5 36 411-446 2-37 (255)
347 PRK10751 molybdopterin-guanine 94.5 0.055 1.2E-06 51.5 4.9 29 408-436 5-33 (173)
348 PF03205 MobB: Molybdopterin g 94.5 0.052 1.1E-06 50.0 4.6 35 410-444 1-36 (140)
349 cd03246 ABCC_Protease_Secretio 94.5 0.12 2.6E-06 49.5 7.4 125 409-539 28-168 (173)
350 PF03266 NTPase_1: NTPase; In 94.5 0.029 6.3E-07 53.4 3.0 24 412-435 2-25 (168)
351 cd03230 ABC_DR_subfamily_A Thi 94.5 0.18 3.8E-06 48.4 8.5 116 409-529 26-159 (173)
352 TIGR00390 hslU ATP-dependent p 94.4 0.098 2.1E-06 56.5 7.1 52 386-437 12-75 (441)
353 PRK09435 membrane ATPase/prote 94.4 0.081 1.7E-06 56.0 6.5 41 396-436 43-83 (332)
354 PLN03187 meiotic recombination 94.4 0.085 1.8E-06 56.2 6.6 47 398-444 115-167 (344)
355 cd01123 Rad51_DMC1_radA Rad51_ 94.4 0.094 2E-06 53.0 6.8 47 398-444 8-60 (235)
356 cd02024 NRK1 Nicotinamide ribo 94.4 0.028 6.1E-07 54.4 2.7 23 411-433 1-23 (187)
357 PRK05986 cob(I)alamin adenolsy 94.3 0.089 1.9E-06 50.7 6.0 116 409-525 22-158 (191)
358 cd01122 GP4d_helicase GP4d_hel 94.3 0.19 4.1E-06 52.1 9.0 36 409-444 30-66 (271)
359 cd02020 CMPK Cytidine monophos 94.3 0.032 6.9E-07 51.7 2.9 24 411-434 1-24 (147)
360 cd02021 GntK Gluconate kinase 94.3 0.029 6.4E-07 52.3 2.6 23 411-433 1-23 (150)
361 PF06745 KaiC: KaiC; InterPro 94.3 0.054 1.2E-06 54.5 4.7 47 398-444 8-55 (226)
362 PF09848 DUF2075: Uncharacteri 94.3 0.14 3.1E-06 55.2 8.3 35 410-444 2-38 (352)
363 cd02025 PanK Pantothenate kina 94.3 0.029 6.4E-07 56.1 2.8 25 411-435 1-25 (220)
364 cd02023 UMPK Uridine monophosp 94.3 0.031 6.7E-07 55.0 2.8 23 411-433 1-23 (198)
365 PRK05973 replicative DNA helic 94.3 0.11 2.4E-06 52.2 6.7 36 409-444 64-99 (237)
366 cd01125 repA Hexameric Replica 94.3 0.37 8.1E-06 48.8 10.8 24 411-434 3-26 (239)
367 COG1428 Deoxynucleoside kinase 94.3 0.036 7.9E-07 53.6 3.1 26 409-434 4-29 (216)
368 PRK12724 flagellar biosynthesi 94.3 0.17 3.6E-06 55.0 8.5 25 409-433 223-247 (432)
369 TIGR01447 recD exodeoxyribonuc 94.3 0.17 3.6E-06 58.2 9.0 27 409-435 160-186 (586)
370 COG5635 Predicted NTPase (NACH 94.2 0.33 7.2E-06 58.5 12.0 191 411-606 224-448 (824)
371 COG2884 FtsE Predicted ATPase 94.2 0.2 4.4E-06 47.7 7.9 55 478-532 144-204 (223)
372 PRK15424 propionate catabolism 94.2 0.11 2.4E-06 58.8 7.4 47 386-432 219-265 (538)
373 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.078 1.7E-06 53.4 5.6 48 397-444 8-55 (229)
374 TIGR01351 adk adenylate kinase 94.2 0.14 3E-06 50.9 7.3 22 412-433 2-23 (210)
375 TIGR02322 phosphon_PhnN phosph 94.2 0.038 8.3E-07 53.3 3.2 25 410-434 2-26 (179)
376 TIGR01818 ntrC nitrogen regula 94.2 0.8 1.7E-05 51.4 14.3 48 386-433 134-181 (463)
377 KOG0651 26S proteasome regulat 94.1 0.074 1.6E-06 54.2 5.1 29 409-437 166-194 (388)
378 TIGR01069 mutS2 MutS2 family p 94.1 0.067 1.5E-06 63.4 5.7 24 409-432 322-345 (771)
379 PF00437 T2SE: Type II/IV secr 94.1 0.11 2.3E-06 53.9 6.6 127 385-523 103-230 (270)
380 TIGR02858 spore_III_AA stage I 94.1 0.22 4.8E-06 51.3 8.8 115 409-527 111-231 (270)
381 PRK15453 phosphoribulokinase; 94.1 0.067 1.5E-06 54.7 4.9 38 407-444 3-40 (290)
382 cd00464 SK Shikimate kinase (S 94.0 0.042 9.2E-07 51.3 3.2 23 412-434 2-24 (154)
383 PRK05201 hslU ATP-dependent pr 94.0 0.072 1.6E-06 57.6 5.2 52 386-437 15-78 (443)
384 PF06068 TIP49: TIP49 C-termin 94.0 0.068 1.5E-06 56.4 4.8 56 385-440 23-81 (398)
385 COG0003 ArsA Predicted ATPase 94.0 0.082 1.8E-06 55.6 5.5 36 409-444 2-37 (322)
386 PRK13765 ATP-dependent proteas 94.0 0.091 2E-06 60.6 6.3 61 381-445 26-87 (637)
387 PRK14738 gmk guanylate kinase; 94.0 0.042 9.1E-07 54.4 3.2 31 402-432 6-36 (206)
388 TIGR01650 PD_CobS cobaltochela 94.0 0.088 1.9E-06 55.3 5.6 50 384-437 43-92 (327)
389 PRK07276 DNA polymerase III su 94.0 2.5 5.3E-05 44.0 16.1 65 488-553 103-173 (290)
390 TIGR02915 PEP_resp_reg putativ 94.0 0.6 1.3E-05 52.2 12.7 47 386-432 139-185 (445)
391 PRK12339 2-phosphoglycerate ki 93.9 0.051 1.1E-06 53.2 3.5 25 409-433 3-27 (197)
392 PRK05917 DNA polymerase III su 93.9 1.6 3.4E-05 45.3 14.5 38 395-433 6-43 (290)
393 PF08298 AAA_PrkA: PrkA AAA do 93.9 0.076 1.7E-06 55.8 4.9 51 386-436 61-115 (358)
394 cd00071 GMPK Guanosine monopho 93.9 0.038 8.3E-07 50.8 2.5 26 411-436 1-26 (137)
395 PF13481 AAA_25: AAA domain; P 93.9 0.24 5.2E-06 48.2 8.3 26 410-435 33-58 (193)
396 PRK08533 flagellar accessory p 93.9 0.11 2.3E-06 52.5 5.9 37 408-444 23-59 (230)
397 PRK05537 bifunctional sulfate 93.9 0.075 1.6E-06 60.8 5.3 50 386-435 369-418 (568)
398 PRK13949 shikimate kinase; Pro 93.9 0.046 1E-06 52.2 3.1 24 411-434 3-26 (169)
399 PF02374 ArsA_ATPase: Anion-tr 93.9 0.081 1.7E-06 55.7 5.1 35 410-444 2-36 (305)
400 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.17 3.6E-06 47.6 6.8 113 410-530 26-145 (157)
401 PRK14493 putative bifunctional 93.8 0.07 1.5E-06 55.0 4.4 34 410-444 2-35 (274)
402 PF13245 AAA_19: Part of AAA d 93.8 0.059 1.3E-06 43.8 3.1 24 409-432 10-33 (76)
403 COG1936 Predicted nucleotide k 93.8 0.047 1E-06 51.1 2.8 20 411-430 2-21 (180)
404 TIGR02788 VirB11 P-type DNA tr 93.7 0.1 2.2E-06 55.1 5.7 87 409-502 144-231 (308)
405 TIGR00750 lao LAO/AO transport 93.7 0.11 2.5E-06 54.5 6.0 39 398-436 23-61 (300)
406 PRK05800 cobU adenosylcobinami 93.7 0.21 4.6E-06 47.6 7.3 23 411-433 3-25 (170)
407 PRK13948 shikimate kinase; Pro 93.7 0.051 1.1E-06 52.5 3.0 28 408-435 9-36 (182)
408 PF00625 Guanylate_kin: Guanyl 93.7 0.063 1.4E-06 52.0 3.7 35 409-443 2-36 (183)
409 TIGR01313 therm_gnt_kin carboh 93.7 0.042 9.1E-07 52.1 2.4 22 412-433 1-22 (163)
410 PRK04328 hypothetical protein; 93.6 0.1 2.2E-06 53.3 5.3 48 397-444 11-58 (249)
411 TIGR00176 mobB molybdopterin-g 93.6 0.072 1.6E-06 50.0 3.9 26 411-436 1-26 (155)
412 KOG0736 Peroxisome assembly fa 93.6 0.58 1.3E-05 53.6 11.3 50 388-437 403-459 (953)
413 TIGR00764 lon_rel lon-related 93.6 0.11 2.4E-06 59.9 6.2 56 385-444 17-73 (608)
414 COG0714 MoxR-like ATPases [Gen 93.6 0.083 1.8E-06 56.5 4.8 47 387-437 25-71 (329)
415 TIGR02524 dot_icm_DotB Dot/Icm 93.6 0.14 3.1E-06 55.0 6.5 89 409-502 134-225 (358)
416 PRK14530 adenylate kinase; Pro 93.6 0.056 1.2E-06 53.9 3.2 23 411-433 5-27 (215)
417 KOG0726 26S proteasome regulat 93.5 0.23 5E-06 50.2 7.2 29 409-437 219-247 (440)
418 cd00046 DEXDc DEAD-like helica 93.5 0.33 7.2E-06 43.7 8.1 34 411-444 2-37 (144)
419 PRK13946 shikimate kinase; Pro 93.5 0.056 1.2E-06 52.4 3.1 26 409-434 10-35 (184)
420 TIGR00554 panK_bact pantothena 93.5 0.11 2.4E-06 54.0 5.3 28 407-434 60-87 (290)
421 PRK13768 GTPase; Provisional 93.5 0.094 2E-06 53.7 4.8 34 410-443 3-36 (253)
422 COG2401 ABC-type ATPase fused 93.5 0.22 4.8E-06 52.9 7.3 57 479-535 515-578 (593)
423 COG0563 Adk Adenylate kinase a 93.4 0.06 1.3E-06 51.8 3.0 23 411-433 2-24 (178)
424 COG1224 TIP49 DNA helicase TIP 93.4 0.14 3.1E-06 53.2 5.8 55 383-437 36-93 (450)
425 PF13086 AAA_11: AAA domain; P 93.4 0.16 3.4E-06 50.9 6.3 36 394-433 6-41 (236)
426 PLN02200 adenylate kinase fami 93.4 0.07 1.5E-06 53.9 3.6 25 409-433 43-67 (234)
427 COG4240 Predicted kinase [Gene 93.4 0.21 4.6E-06 48.7 6.5 38 407-444 48-86 (300)
428 PRK14527 adenylate kinase; Pro 93.3 0.069 1.5E-06 52.1 3.4 25 409-433 6-30 (191)
429 TIGR03880 KaiC_arch_3 KaiC dom 93.3 0.23 5E-06 49.8 7.3 47 398-444 5-51 (224)
430 cd01983 Fer4_NifH The Fer4_Nif 93.3 0.093 2E-06 44.3 3.8 25 411-435 1-25 (99)
431 PRK13975 thymidylate kinase; P 93.3 0.074 1.6E-06 52.1 3.5 26 410-435 3-28 (196)
432 KOG3347 Predicted nucleotide k 93.3 0.068 1.5E-06 48.6 2.9 24 410-433 8-31 (176)
433 TIGR00073 hypB hydrogenase acc 93.3 0.11 2.4E-06 51.4 4.8 29 407-435 20-48 (207)
434 TIGR03263 guanyl_kin guanylate 93.3 0.056 1.2E-06 52.1 2.6 24 410-433 2-25 (180)
435 COG1763 MobB Molybdopterin-gua 93.3 0.097 2.1E-06 49.1 4.0 36 409-444 2-37 (161)
436 PF13521 AAA_28: AAA domain; P 93.3 0.067 1.4E-06 50.7 3.0 21 412-432 2-22 (163)
437 PLN02318 phosphoribulokinase/u 93.2 0.098 2.1E-06 58.8 4.6 34 400-433 56-89 (656)
438 KOG1532 GTPase XAB1, interacts 93.2 0.1 2.2E-06 52.3 4.1 34 408-441 18-51 (366)
439 PRK04182 cytidylate kinase; Pr 93.2 0.072 1.6E-06 51.2 3.2 24 411-434 2-25 (180)
440 TIGR02782 TrbB_P P-type conjug 93.1 0.42 9.2E-06 50.1 9.1 83 410-502 133-217 (299)
441 smart00534 MUTSac ATPase domai 93.1 0.072 1.6E-06 51.7 3.1 21 411-431 1-21 (185)
442 TIGR02768 TraA_Ti Ti-type conj 93.1 0.39 8.5E-06 57.0 9.7 27 410-436 369-395 (744)
443 KOG0742 AAA+-type ATPase [Post 93.1 0.16 3.6E-06 53.6 5.7 29 409-437 384-412 (630)
444 PF05970 PIF1: PIF1-like helic 93.1 0.14 3E-06 55.5 5.6 33 408-440 21-53 (364)
445 PRK00300 gmk guanylate kinase; 93.1 0.074 1.6E-06 52.5 3.2 26 409-434 5-30 (205)
446 PRK05057 aroK shikimate kinase 93.1 0.078 1.7E-06 50.8 3.2 25 410-434 5-29 (172)
447 PRK14737 gmk guanylate kinase; 93.1 0.075 1.6E-06 51.6 3.1 25 409-433 4-28 (186)
448 PTZ00494 tuzin-like protein; P 93.1 8.5 0.00018 42.0 18.3 163 382-555 367-544 (664)
449 PRK05818 DNA polymerase III su 93.1 7.8 0.00017 39.5 17.5 25 409-433 7-31 (261)
450 cd01672 TMPK Thymidine monopho 93.0 0.2 4.4E-06 48.9 6.2 26 411-436 2-27 (200)
451 TIGR00041 DTMP_kinase thymidyl 93.0 0.22 4.8E-06 48.6 6.4 27 410-436 4-30 (195)
452 PLN02348 phosphoribulokinase 93.0 0.12 2.6E-06 55.5 4.7 30 406-435 46-75 (395)
453 PRK09280 F0F1 ATP synthase sub 93.0 0.32 6.8E-06 53.6 8.1 92 409-502 144-251 (463)
454 cd03116 MobB Molybdenum is an 93.0 0.13 2.9E-06 48.4 4.6 28 410-437 2-29 (159)
455 TIGR01287 nifH nitrogenase iro 93.0 0.1 2.2E-06 54.3 4.1 34 410-443 1-34 (275)
456 PF03029 ATP_bind_1: Conserved 93.0 0.094 2E-06 53.1 3.8 30 414-443 1-30 (238)
457 PF02367 UPF0079: Uncharacteri 93.0 0.14 3.1E-06 45.7 4.5 27 407-433 13-39 (123)
458 KOG0740 AAA+-type ATPase [Post 93.0 0.67 1.5E-05 50.3 10.3 29 409-437 186-214 (428)
459 PRK06761 hypothetical protein; 93.0 0.11 2.4E-06 53.6 4.3 27 410-436 4-30 (282)
460 smart00487 DEXDc DEAD-like hel 93.0 0.72 1.6E-05 44.3 10.0 35 410-444 25-61 (201)
461 PRK04301 radA DNA repair and r 93.0 0.25 5.5E-06 52.4 7.2 48 397-444 90-143 (317)
462 TIGR01448 recD_rel helicase, p 92.9 0.32 6.8E-06 57.6 8.6 27 410-436 339-365 (720)
463 PF00154 RecA: recA bacterial 92.9 0.2 4.4E-06 52.6 6.2 36 409-444 53-88 (322)
464 TIGR02173 cyt_kin_arch cytidyl 92.9 0.083 1.8E-06 50.3 3.2 23 411-433 2-24 (171)
465 PRK14531 adenylate kinase; Pro 92.9 0.089 1.9E-06 51.0 3.4 23 411-433 4-26 (183)
466 COG4916 Uncharacterized protei 92.9 0.73 1.6E-05 45.4 9.4 245 14-291 4-259 (329)
467 cd03114 ArgK-like The function 92.9 0.12 2.6E-06 48.2 4.0 27 411-437 1-27 (148)
468 PRK03731 aroL shikimate kinase 92.9 0.086 1.9E-06 50.4 3.2 24 411-434 4-27 (171)
469 cd03213 ABCG_EPDR ABCG transpo 92.8 0.51 1.1E-05 46.1 8.7 25 409-433 35-59 (194)
470 COG1124 DppF ABC-type dipeptid 92.8 0.09 1.9E-06 52.1 3.2 23 409-431 33-55 (252)
471 PRK12597 F0F1 ATP synthase sub 92.8 0.33 7.1E-06 53.7 7.9 91 409-502 143-250 (461)
472 cd01130 VirB11-like_ATPase Typ 92.8 0.096 2.1E-06 50.9 3.4 86 409-502 25-113 (186)
473 PRK09302 circadian clock prote 92.8 0.36 7.7E-06 55.0 8.6 50 395-444 259-308 (509)
474 COG2274 SunT ABC-type bacterio 92.8 0.2 4.4E-06 58.6 6.6 23 409-431 499-521 (709)
475 PRK14532 adenylate kinase; Pro 92.8 0.081 1.7E-06 51.5 2.9 22 412-433 3-24 (188)
476 cd01428 ADK Adenylate kinase ( 92.8 0.083 1.8E-06 51.5 3.0 22 412-433 2-23 (194)
477 PF06309 Torsin: Torsin; Inte 92.8 0.21 4.5E-06 44.6 5.1 46 388-433 27-77 (127)
478 PRK12338 hypothetical protein; 92.7 0.094 2E-06 54.9 3.4 25 409-433 4-28 (319)
479 PRK11361 acetoacetate metaboli 92.7 1.4 3E-05 49.4 13.2 46 387-432 144-189 (457)
480 cd02029 PRK_like Phosphoribulo 92.7 0.12 2.6E-06 52.5 4.1 34 411-444 1-34 (277)
481 cd02117 NifH_like This family 92.7 0.13 2.8E-06 51.2 4.3 34 410-443 1-34 (212)
482 COG0703 AroK Shikimate kinase 92.7 0.096 2.1E-06 49.5 3.1 27 411-437 4-30 (172)
483 TIGR00455 apsK adenylylsulfate 92.7 0.16 3.4E-06 49.3 4.7 28 408-435 17-44 (184)
484 PRK10078 ribose 1,5-bisphospho 92.7 0.086 1.9E-06 51.2 2.9 25 410-434 3-27 (186)
485 KOG0927 Predicted transporter 92.6 0.24 5.3E-06 54.4 6.5 51 480-531 230-285 (614)
486 PRK14721 flhF flagellar biosyn 92.6 0.46 9.9E-06 52.0 8.7 25 409-433 191-215 (420)
487 cd00984 DnaB_C DnaB helicase C 92.6 0.29 6.4E-06 49.6 7.0 37 408-444 12-49 (242)
488 TIGR02525 plasmid_TraJ plasmid 92.6 0.22 4.8E-06 53.7 6.2 87 410-502 150-238 (372)
489 COG0194 Gmk Guanylate kinase [ 92.6 0.11 2.5E-06 49.3 3.5 25 409-433 4-28 (191)
490 PRK05342 clpX ATP-dependent pr 92.6 0.14 3E-06 56.1 4.7 51 387-437 72-136 (412)
491 TIGR02236 recomb_radA DNA repa 92.6 0.33 7.1E-06 51.4 7.4 47 398-444 84-136 (310)
492 cd03285 ABC_MSH2_euk MutS2 hom 92.6 0.16 3.4E-06 50.9 4.7 24 408-431 29-52 (222)
493 cd02034 CooC The accessory pro 92.6 0.17 3.7E-06 44.9 4.4 32 412-443 2-33 (116)
494 COG0378 HypB Ni2+-binding GTPa 92.5 0.14 3E-06 49.0 3.9 36 409-444 13-48 (202)
495 PRK06995 flhF flagellar biosyn 92.5 0.49 1.1E-05 52.7 8.8 26 409-434 256-281 (484)
496 COG2019 AdkA Archaeal adenylat 92.5 0.12 2.6E-06 48.0 3.4 25 409-433 4-28 (189)
497 PF08477 Miro: Miro-like prote 92.5 0.1 2.2E-06 46.3 3.0 21 412-432 2-22 (119)
498 cd00820 PEPCK_HprK Phosphoenol 92.5 0.11 2.3E-06 45.2 2.9 22 409-430 15-36 (107)
499 PRK09302 circadian clock prote 92.5 0.36 7.8E-06 54.9 8.2 50 395-444 17-67 (509)
500 PHA02530 pseT polynucleotide k 92.5 0.097 2.1E-06 55.1 3.3 24 410-433 3-26 (300)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-87 Score=818.96 Aligned_cols=523 Identities=40% Similarity=0.672 Sum_probs=453.5
Q ss_pred CCCCCCCCCCCCCCCceeEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEec
Q 004772 1 MASSSSLSSSFTAKSKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFS 80 (731)
Q Consensus 1 m~~~~~~~~~~~~~~~~dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S 80 (731)
||||||+| +.++|||||||||+|+|++|++||+++|.++||++|+|+ ++++|+.|.+++.+||++|+++|||||
T Consensus 1 ~~~~~~~~----~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~--~~~~g~~~~~~l~~~i~~s~~~ivv~s 74 (1153)
T PLN03210 1 MASSSSSS----RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN--EIERSQSLDPELKQAIRDSRIAVVVFS 74 (1153)
T ss_pred CCCCCCCC----CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC--CccCCCcccHHHHHHHHhCeEEEEEec
Confidence 66665543 468999999999999999999999999999999999987 489999999999999999999999999
Q ss_pred cCccCccccHHHHHHHHHhhhhcCCeeEeEEeecCccccccccCcHHHHHHhhhhcCCChhHHHHHHHHHHHhhcccccc
Q 004772 81 ENYAYSTWCLDELVRILDCKKRNGQTVVPVFYKVSPPAVRKQRLSFGEAFVHHESNFSDKVQVQKWRDSLTQASNISGFY 160 (731)
Q Consensus 81 ~~~~~S~wc~~El~~~~~~~~~~~~~v~Pify~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~ 160 (731)
+|||+|.|||+||++|++|+++.+++|+||||+|+|++||+|+|.||++|.+++.+.. .+++++||+||++|++++||+
T Consensus 75 ~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~-~~~~~~w~~al~~~~~~~g~~ 153 (1153)
T PLN03210 75 KNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKT-EDEKIQWKQALTDVANILGYH 153 (1153)
T ss_pred CCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccc-hhHHHHHHHHHHHHhCcCcee
Confidence 9999999999999999999999999999999999999999999999999999987654 457999999999999999996
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhccCCCCCCCCCCCccccccCCCCCCcceeeEEEeccccccccChHHHHHHHHhhcCc
Q 004772 161 ASRSFRNDAELVEKIAEDISKKLKDMADPPNFPSSMASSSCLSSSFTAKCKYDVFLSFGGEETRTGIGSHLAAALRRKQI 240 (731)
Q Consensus 161 ~~~~~~~~~~~i~~iv~~v~~~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~dvFis~~~~D~~~~f~~~L~~~L~~~g~ 240 (731)
. ..|++|+++|++||++|+++|+... + .
T Consensus 154 ~-~~~~~E~~~i~~Iv~~v~~~l~~~~---------------~-----~------------------------------- 181 (1153)
T PLN03210 154 S-QNWPNEAKMIEEIANDVLGKLNLTP---------------S-----N------------------------------- 181 (1153)
T ss_pred c-CCCCCHHHHHHHHHHHHHHhhcccc---------------C-----c-------------------------------
Confidence 5 5688999999999999999874310 0 0
Q ss_pred ccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChhhHHHHHHHHHHHhhcCCCEEEEEEEeecCCccccccc
Q 004772 241 ELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKWCLDELVKILDCLIKNTGQIVVPVFYRIDSSDVHKQKG 320 (731)
Q Consensus 241 ~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~~~~~~~~~~vlPv~~~vdpsdvr~~~g 320 (731)
+
T Consensus 182 -------~------------------------------------------------------------------------ 182 (1153)
T PLN03210 182 -------D------------------------------------------------------------------------ 182 (1153)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred chHHhhhhhhhcchHHHHHHHHHHhhccccCCceecCCCCcchhhhHHhhhhhcccccCCCCCCCCCcccchhhHHHHHH
Q 004772 321 SFRKAFVHHERNFPDKVQKWREALTKASSISEFFVVDPRNEAGDVEKIAQDISKKVEDMSDSTDLSGFVGLNSRIEKIKS 400 (731)
Q Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~al~~~~~~~g~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~fvGR~~el~~L~~ 400 (731)
.+++|||+.++++|..
T Consensus 183 ----------------------------------------------------------------~~~~vG~~~~l~~l~~ 198 (1153)
T PLN03210 183 ----------------------------------------------------------------FEDFVGIEDHIAKMSS 198 (1153)
T ss_pred ----------------------------------------------------------------cccccchHHHHHHHHH
Confidence 0126788888888888
Q ss_pred hhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeec--cccc---c------cccHHHHHHHHHHhhhcC
Q 004772 401 LLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNV--GEES---S------KMGVIHVRDEVISQVMGE 469 (731)
Q Consensus 401 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~---~------~~~~~~l~~~ll~~l~~~ 469 (731)
+|..+.+++++|+|+||||+||||||+++|+++..+|++.+|+... .... . ......++.+++..+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~ 278 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDK 278 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCC
Confidence 8876667799999999999999999999999999999999988531 1100 0 011233444555543222
Q ss_pred CcccCCCCcHHHHHHHHcCCCcEEEEeccCCch--hHhhhhcCCCCCCCEEEEEeCChhhhhhcCCceEEEcCCCCHHHH
Q 004772 470 NIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS--KSFAVCLDLFSPGSRIIITTRDKRLLYKRGVQSVCEVKGLKHNSA 547 (731)
Q Consensus 470 ~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~--~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea 547 (731)
. .... .....+++.|.++|+||||||||+.. +.+.....++++|++||||||+..++...+..++|+++.|+.++|
T Consensus 279 ~-~~~~-~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea 356 (1153)
T PLN03210 279 K-DIKI-YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELA 356 (1153)
T ss_pred C-Cccc-CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHH
Confidence 1 1111 12356888899999999999998865 555566677889999999999999988877788999999999999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCH-
Q 004772 548 LELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLHKLKLITDPNIYKVLKISYDGLNW- 626 (731)
Q Consensus 548 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~- 626 (731)
++||++++|+...+++.+.+++.+|+++|+|+||||+++|++|++++..+|...++++....+..|..+|+.||+.|++
T Consensus 357 ~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 357 LEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCcc
Confidence 9999999998777777889999999999999999999999999999999999999999888888899999999999986
Q ss_pred HHHHHHHHcccccCCcChhHHHhhhcCcc-hHHHHHHHHHHCcCceeeCCeEEehHHHHHHHHHHHhhcCCCCCCCcccc
Q 004772 627 EEKEIFLDVACFFKGEDVDFVTRVQDDPT-SMRNGLNILVEKSLITISDNRLQMHDMLQEIGKTIIRQESFKEPGKRSKL 705 (731)
Q Consensus 627 ~~k~~fl~la~f~~~~~~~~l~~~~~~~~-~~~~~l~~L~~~sLi~~~~~~~~mHdlvr~~a~~~~~~e~~~~~~~r~rl 705 (731)
.+|.+|+++|||+.+.+.+.+..++..++ .++.+++.|++++||+..++++.||||+|+||++++++++ .+|++|+|+
T Consensus 437 ~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l 515 (1153)
T PLN03210 437 KDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFL 515 (1153)
T ss_pred chhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeE
Confidence 58999999999999999998888887766 7778899999999999998999999999999999999987 789999999
Q ss_pred cCcccHHHHHhcCCCCcceeEEe
Q 004772 706 WDHKDVYQVLKKNKQMNILASIY 728 (731)
Q Consensus 706 ~~~~~i~~~l~~~~~~~~~~~i~ 728 (731)
|++++|+++|++++|++.++||.
T Consensus 516 ~~~~di~~vl~~~~g~~~v~~i~ 538 (1153)
T PLN03210 516 VDAKDICDVLEDNTGTKKVLGIT 538 (1153)
T ss_pred eCHHHHHHHHHhCcccceeeEEE
Confidence 99999999999999999999996
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=7.5e-46 Score=343.13 Aligned_cols=158 Identities=26% Similarity=0.434 Sum_probs=145.2
Q ss_pred CCCceeEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccccHHH
Q 004772 13 AKSKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTWCLDE 92 (731)
Q Consensus 13 ~~~~~dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~wc~~E 92 (731)
+..+|||||||||+|+|++|++||+.+|.++||+||+|+. ++++|+.|.++|.+||++|+++|||||+||++|.|||+|
T Consensus 23 ~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~-el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE 101 (187)
T PLN03194 23 SAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNK-NMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE 101 (187)
T ss_pred CCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCc-cccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence 4688999999999999999999999999999999999985 799999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCeeEeEEeecCccccccc-cCcHHHHHHhhhhcCCChhHHHHHHHHHHHhhcccccccCCCCCCHHHH
Q 004772 93 LVRILDCKKRNGQTVVPVFYKVSPPAVRKQ-RLSFGEAFVHHESNFSDKVQVQKWRDSLTQASNISGFYASRSFRNDAEL 171 (731)
Q Consensus 93 l~~~~~~~~~~~~~v~Pify~v~p~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~~~~~~ 171 (731)
|++|++|. ..||||||+|+|++||+| .|. ...+++++||+||++|++++|+++....++|+++
T Consensus 102 L~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~ 165 (187)
T PLN03194 102 LALIMESK----KRVIPIFCDVKPSQLRVVDNGT------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEV 165 (187)
T ss_pred HHHHHHcC----CEEEEEEecCCHHHhhccccCC------------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHH
Confidence 99999974 379999999999999997 443 1346799999999999999999776656889999
Q ss_pred HHHHHHhhhhhhccCC
Q 004772 172 VEKIAEDISKKLKDMA 187 (731)
Q Consensus 172 i~~iv~~v~~~l~~~~ 187 (731)
|++||+.|.++|.++.
T Consensus 166 i~~iv~~v~k~l~~~~ 181 (187)
T PLN03194 166 VTMASDAVIKNLIELE 181 (187)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-38 Score=366.94 Aligned_cols=299 Identities=29% Similarity=0.434 Sum_probs=252.7
Q ss_pred ccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH---hcccCcceEEEeecccccccccHHHHHHHHHHh
Q 004772 389 VGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ---ISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQ 465 (731)
Q Consensus 389 vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 465 (731)
||.+..++++.+.|..++ .++++|+||||+||||||++++++ +..+|+..+|+. ++..+....++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999997655 389999999999999999999974 568999999999 88889999999999998
Q ss_pred hhcCCcccCC---CCcHHHHHHHHcCCCcEEEEeccCCchh--HhhhhcCCCCCCCEEEEEeCChhhhhh-cCCceEEEc
Q 004772 466 VMGENIKIGT---PTITPNIKKRLQQRKVLIVLHDVDDNSK--SFAVCLDLFSPGSRIIITTRDKRLLYK-RGVQSVCEV 539 (731)
Q Consensus 466 l~~~~~~~~~---~~~~~~l~~~L~~k~~LLVLDdv~~~~~--~l~~~~~~~~~gs~IIiTTR~~~v~~~-~~~~~~~~l 539 (731)
++........ ......+.+.|+++|+||||||||+..+ .+...++....|++|++|||+..|+.. ++....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 6654333322 2477889999999999999999999864 233333333457999999999999988 788889999
Q ss_pred CCCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCC-CHHHHHHHHHHhcCCC-------C
Q 004772 540 KGLKHNSALELFCRKAFRQN-NRSPDLLELSEEVAHYANGNPLALQVLGSSLYQK-SKEQWKDKLHKLKLIT-------D 610 (731)
Q Consensus 540 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~-~~~~w~~~l~~l~~~~-------~ 610 (731)
+.|+.+|||.||++.+|... ...+...+++++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+.... .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999997653 3334588999999999999999999999999986 5679999999886651 3
Q ss_pred ccHHHHHHHcHhCCCHHHHHHHHHcccccCCcChh--HHHhhhcCcc-------------hHHHHHHHHHHCcCceeeC-
Q 004772 611 PNIYKVLKISYDGLNWEEKEIFLDVACFFKGEDVD--FVTRVQDDPT-------------SMRNGLNILVEKSLITISD- 674 (731)
Q Consensus 611 ~~i~~~l~~s~~~L~~~~k~~fl~la~f~~~~~~~--~l~~~~~~~~-------------~~~~~l~~L~~~sLi~~~~- 674 (731)
+.+..+|..||+.|+++.|.||+|||.||+++.++ .+...|.++| .+...+..|++++|+...+
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 46889999999999988999999999999998665 5555554433 6778899999999999875
Q ss_pred ----CeEEehHHHHHHHHHHHhh
Q 004772 675 ----NRLQMHDMLQEIGKTIIRQ 693 (731)
Q Consensus 675 ----~~~~mHdlvr~~a~~~~~~ 693 (731)
..+.|||+||++|..++++
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~ 497 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASD 497 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhcc
Confidence 5799999999999999993
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=280.67 Aligned_cols=159 Identities=23% Similarity=0.384 Sum_probs=140.4
Q ss_pred CCCCCcceeeEEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChh
Q 004772 204 SSFTAKCKYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKW 283 (731)
Q Consensus 204 ~~~~~~~~~dvFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~ 283 (731)
++++...+|||||||+|+|++.+|++||+++|+++||+||+|+++ +++|+.+.++|.+||++|+++|||||++|++|.|
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~e-l~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKN-MKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCcc-ccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 344456789999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEEeecCCccccc-ccchHHhhhhhhhcchHHHHHHHHHHhhccccCCcee-cCCCCc
Q 004772 284 CLDELVKILDCLIKNTGQIVVPVFYRIDSSDVHKQ-KGSFRKAFVHHERNFPDKVQKWREALTKASSISEFFV-VDPRNE 361 (731)
Q Consensus 284 c~~El~~~~~~~~~~~~~~vlPv~~~vdpsdvr~~-~g~~~~~~~~~~~~~~~~i~~~~~al~~~~~~~g~~~-~~~~~~ 361 (731)
|++||++|++|. ..|+||||+|+|+|||+| .+. ...+++++|+.||.+++++.|+.. ...+++
T Consensus 98 CLdEL~~I~e~~-----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e 162 (187)
T PLN03194 98 CLHELALIMESK-----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNW 162 (187)
T ss_pred HHHHHHHHHHcC-----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccCCCCCCCH
Confidence 999999999874 589999999999999997 332 124789999999999999999832 224678
Q ss_pred chhhhHHhhhhhccccc
Q 004772 362 AGDVEKIAQDISKKVED 378 (731)
Q Consensus 362 ~~~~~~i~~~v~~~l~~ 378 (731)
++.++.|+..+.+.+..
T Consensus 163 ~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 163 SEVVTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999988876643
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.2e-34 Score=302.44 Aligned_cols=261 Identities=31% Similarity=0.480 Sum_probs=200.1
Q ss_pred chhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH--hcccCcceEEEeecccccccccHHHHHHHHHHhhhc
Q 004772 391 LNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ--ISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMG 468 (731)
Q Consensus 391 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 468 (731)
|+.++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+. .+.......++..++..++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999876677999999999999999999999987 889999999998 34444447777788877776
Q ss_pred CCccc----CCCCcHHHHHHHHcCCCcEEEEeccCCchhH--hhhhcCCCCCCCEEEEEeCChhhhhhcCC-ceEEEcCC
Q 004772 469 ENIKI----GTPTITPNIKKRLQQRKVLIVLHDVDDNSKS--FAVCLDLFSPGSRIIITTRDKRLLYKRGV-QSVCEVKG 541 (731)
Q Consensus 469 ~~~~~----~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~--l~~~~~~~~~gs~IIiTTR~~~v~~~~~~-~~~~~l~~ 541 (731)
..... +.......+.+.|.++++||||||||+.... +...++....|++||||||+..++..... ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54322 2222678899999999999999999987732 33344445678999999999988766543 67899999
Q ss_pred CCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCC-CHHHHHHHHHHhcCCC------CccH
Q 004772 542 LKHNSALELFCRKAFRQN-NRSPDLLELSEEVAHYANGNPLALQVLGSSLYQK-SKEQWKDKLHKLKLIT------DPNI 613 (731)
Q Consensus 542 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~-~~~~w~~~l~~l~~~~------~~~i 613 (731)
|+.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +..+|...++.+.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999987554 2334456788999999999999999999999542 5577888887654332 4569
Q ss_pred HHHHHHcHhCCCHHHHHHHHHcccccCCcC--hhHHHhhhcCcc
Q 004772 614 YKVLKISYDGLNWEEKEIFLDVACFFKGED--VDFVTRVQDDPT 655 (731)
Q Consensus 614 ~~~l~~s~~~L~~~~k~~fl~la~f~~~~~--~~~l~~~~~~~~ 655 (731)
..++..||+.|+++.|.||++||+||.+.+ .+.+..+|..++
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~ 280 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEG 280 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-H
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCC
Confidence 999999999999999999999999998866 667888887654
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=4.1e-32 Score=332.65 Aligned_cols=173 Identities=41% Similarity=0.670 Sum_probs=160.9
Q ss_pred CCCCCCcceeeEEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCCh
Q 004772 203 SSSFTAKCKYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSK 282 (731)
Q Consensus 203 ~~~~~~~~~~dvFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~ 282 (731)
||++++.|+||||+||||+|+|++|++||+.+|.++||.+|+|+ + +++|+.+.+++.+||++|+++|||||++|++|.
T Consensus 4 ~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~-~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~ 81 (1153)
T PLN03210 4 SSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-E-IERSQSLDPELKQAIRDSRIAVVVFSKNYASSS 81 (1153)
T ss_pred CCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-C-ccCCCcccHHHHHHHHhCeEEEEEecCCcccch
Confidence 44556789999999999999999999999999999999999987 6 899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCEEEEEEEeecCCcccccccchHHhhhhhhhcc-hHHHHHHHHHHhhccccCCceecCCCCc
Q 004772 283 WCLDELVKILDCLIKNTGQIVVPVFYRIDSSDVHKQKGSFRKAFVHHERNF-PDKVQKWREALTKASSISEFFVVDPRNE 361 (731)
Q Consensus 283 ~c~~El~~~~~~~~~~~~~~vlPv~~~vdpsdvr~~~g~~~~~~~~~~~~~-~~~i~~~~~al~~~~~~~g~~~~~~~~~ 361 (731)
||++||++|++|. +..+++|+||||+|+|+|||+|+|.||++|.++..+. .+++++|++||++++++.||+...+.++
T Consensus 82 wcl~el~~i~~~~-~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E 160 (1153)
T PLN03210 82 WCLNELLEIVRCK-EELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNE 160 (1153)
T ss_pred HHHHHHHHHHHhh-hhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCH
Confidence 9999999999998 8889999999999999999999999999999987664 4789999999999999999976667889
Q ss_pred chhhhHHhhhhhccccc
Q 004772 362 AGDVEKIAQDISKKVED 378 (731)
Q Consensus 362 ~~~~~~i~~~v~~~l~~ 378 (731)
++.+++|++++..++..
T Consensus 161 ~~~i~~Iv~~v~~~l~~ 177 (1153)
T PLN03210 161 AKMIEEIANDVLGKLNL 177 (1153)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999987754
No 7
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.87 E-value=3.3e-23 Score=192.65 Aligned_cols=132 Identities=33% Similarity=0.520 Sum_probs=116.6
Q ss_pred EEEeeecccCCCChHHHHHHHHHhC--CCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccccHHHHHHH
Q 004772 19 VFLSFLGKDTGIGIRDHLAAALRRK--QIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTWCLDELVRI 96 (731)
Q Consensus 19 vFis~~~~d~~~~f~~~L~~~l~~~--~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~wc~~El~~~ 96 (731)
|||||++.+.+..|+++|..+|++. |+++|++++ ++.+|..+.++|.++|++|+++|+|||+||+.|.||+.||..+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~r-D~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDER-DFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHH-CTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEech-hhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 8999999444567999999999999 999999986 8999999999999999999999999999999999999999999
Q ss_pred HHhhhhcC--CeeEeEEeecCccccc-cccCcHHHHHHhhhhcCCC---hhHHHHHHHHHH
Q 004772 97 LDCKKRNG--QTVVPVFYKVSPPAVR-KQRLSFGEAFVHHESNFSD---KVQVQKWRDSLT 151 (731)
Q Consensus 97 ~~~~~~~~--~~v~Pify~v~p~~v~-~~~~~~~~~~~~~~~~~~~---~~~~~~w~~al~ 151 (731)
+++....+ .+|+||||+|.+++++ .+++.|+..|....+-..+ ..+...|++++.
T Consensus 80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 99876544 8999999999999999 7999999999988776654 357899999875
No 8
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.82 E-value=5.5e-20 Score=171.16 Aligned_cols=137 Identities=36% Similarity=0.620 Sum_probs=116.1
Q ss_pred ceeEEEeeec-ccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccccHHHHH
Q 004772 16 KYDVFLSFLG-KDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTWCLDELV 94 (731)
Q Consensus 16 ~~dvFis~~~-~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~wc~~El~ 94 (731)
.|||||||++ ++..+.|+.+|..+|...|+.+|.|+. . +|.....+|.++|++|+++|+|+|++|..|.||..|+.
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~-~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~ 77 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDF-E--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELV 77 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCc-c--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHH
Confidence 5999999999 456678999999999999999999974 3 33333349999999999999999999999999999999
Q ss_pred HHHHhhhh-cCCeeEeEEeecCccccccccCcHHHHHHhhhhcCCChhHHHHHHHHHHHhhc
Q 004772 95 RILDCKKR-NGQTVVPVFYKVSPPAVRKQRLSFGEAFVHHESNFSDKVQVQKWRDSLTQASN 155 (731)
Q Consensus 95 ~~~~~~~~-~~~~v~Pify~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~ 155 (731)
.+.++... ....||||+|+..|+++..+.+.++..+..+.....++.....|++++..+++
T Consensus 78 ~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~ 139 (140)
T smart00255 78 AALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence 99997644 66899999999999999999999999998875555544322789999887754
No 9
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.72 E-value=2e-17 Score=153.96 Aligned_cols=134 Identities=41% Similarity=0.715 Sum_probs=110.6
Q ss_pred eeeEEEeccc-cccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChhhHHHHH
Q 004772 211 KYDVFLSFGG-EETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKWCLDELV 289 (731)
Q Consensus 211 ~~dvFis~~~-~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~~El~ 289 (731)
+|||||||++ .+....|+.+|...|...|+.+|.|++. + |.....+|.++|++|+++|+|+||+|..|.||..|+.
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~-~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~ 77 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-P--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELV 77 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc-c--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHH
Confidence 4899999998 4556789999999999999999999754 3 3333349999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCEEEEEEEeecCCcccccccchHHhhhhhhhcchHHH--HHHHHHHhhc
Q 004772 290 KILDCLIKNTGQIVVPVFYRIDSSDVHKQKGSFRKAFVHHERNFPDKV--QKWREALTKA 347 (731)
Q Consensus 290 ~~~~~~~~~~~~~vlPv~~~vdpsdvr~~~g~~~~~~~~~~~~~~~~i--~~~~~al~~~ 347 (731)
.++.+........+|||+++..|+++..+.+.++..+.....+..+.. ..|+..+...
T Consensus 78 ~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l 137 (140)
T smart00255 78 AALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAV 137 (140)
T ss_pred HHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHh
Confidence 999887444678999999998888899999999998877644444333 4788776544
No 10
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.71 E-value=3.8e-18 Score=158.64 Aligned_cols=130 Identities=33% Similarity=0.548 Sum_probs=109.2
Q ss_pred EEEeccccccccChHHHHHHHHhhc--CcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChhhHHHHHHH
Q 004772 214 VFLSFGGEETRTGIGSHLAAALRRK--QIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKWCLDELVKI 291 (731)
Q Consensus 214 vFis~~~~D~~~~f~~~L~~~L~~~--g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~ 291 (731)
|||||++.+.+..|+.+|..+|++. |+++|+++++ +.+|..+.++|..+|++|+++|+|||++|+.|.||+.||..+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD-~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERD-FLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHC-TSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechh-hcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 7999999444456999999999998 9999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC--CCEEEEEEEeecCCccc-ccccchHHhhhhhhhcc-----hHHHHHHHHHHh
Q 004772 292 LDCLIKNT--GQIVVPVFYRIDSSDVH-KQKGSFRKAFVHHERNF-----PDKVQKWREALT 345 (731)
Q Consensus 292 ~~~~~~~~--~~~vlPv~~~vdpsdvr-~~~g~~~~~~~~~~~~~-----~~~i~~~~~al~ 345 (731)
+.+. ... ...|+|+||+|.+++++ .+.+.+...+.....-. ......|+++..
T Consensus 80 ~~~~-~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 80 LERL-LEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHH-HCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhc-cccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9998 544 48899999999999999 78888888876653322 246778887653
No 11
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.70 E-value=2.6e-15 Score=182.94 Aligned_cols=295 Identities=15% Similarity=0.157 Sum_probs=192.1
Q ss_pred CCCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHH
Q 004772 380 SDSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 380 ~~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
.||..+..++-|...++.|.+. ...+++.|+|++|.|||||+.+++++. ..++|+...... .....++
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~d---~~~~~f~ 75 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDESD---NQPERFA 75 (903)
T ss_pred CCCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCccc---CCHHHHH
Confidence 4666778899998777766432 347899999999999999999988643 268888632222 2233333
Q ss_pred HHHHHhhhcCCcc-----------cCCCCc---HHHHHHHHc--CCCcEEEEeccCCch-----hHhhhhcCCCCCCCEE
Q 004772 460 DEVISQVMGENIK-----------IGTPTI---TPNIKKRLQ--QRKVLIVLHDVDDNS-----KSFAVCLDLFSPGSRI 518 (731)
Q Consensus 460 ~~ll~~l~~~~~~-----------~~~~~~---~~~l~~~L~--~k~~LLVLDdv~~~~-----~~l~~~~~~~~~gs~I 518 (731)
..++..+...... ...... ...+...+. +.+++|||||++..+ +.+..+....+++.++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~l 155 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTL 155 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEE
Confidence 4444333211100 000111 222222332 679999999998765 3444455556778899
Q ss_pred EEEeCChhhhh--hc-CCceEEEcC----CCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 004772 519 IITTRDKRLLY--KR-GVQSVCEVK----GLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLY 591 (731)
Q Consensus 519 IiTTR~~~v~~--~~-~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~ 591 (731)
|||||...-+. .. .......+. +|+.+|+.+||...... .-..+.+.++++.|+|+|+++..++..+.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99999742111 11 112234555 99999999999876521 12345678899999999999999887775
Q ss_pred CCCHHHHHHHHHHhcCCCCccHHHHHHHc-HhCCCHHHHHHHHHcccccCCcChhHHHhhhcCcchHHHHHHHHHHCcCc
Q 004772 592 QKSKEQWKDKLHKLKLITDPNIYKVLKIS-YDGLNWEEKEIFLDVACFFKGEDVDFVTRVQDDPTSMRNGLNILVEKSLI 670 (731)
Q Consensus 592 ~~~~~~w~~~l~~l~~~~~~~i~~~l~~s-~~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~l~~L~~~sLi 670 (731)
..... .......+.......+...+... ++.||++.+.++..+|+++ .++.+.+..+.+ ..+....+..|.+.+|+
T Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~-~~~~~~~L~~l~~~~l~ 307 (903)
T PRK04841 231 QNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG-EENGQMRLEELERQGLF 307 (903)
T ss_pred hCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC-CCcHHHHHHHHHHCCCe
Confidence 43210 01111222111234577765544 8999999999999999986 667666665553 45678999999999996
Q ss_pred ee-e---CCeEEehHHHHHHHHHHHhhc
Q 004772 671 TI-S---DNRLQMHDMLQEIGKTIIRQE 694 (731)
Q Consensus 671 ~~-~---~~~~~mHdlvr~~a~~~~~~e 694 (731)
.. . +.+|.+|+|++++.+..+..+
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 53 2 237999999999999998654
No 12
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.49 E-value=2e-14 Score=125.67 Aligned_cols=90 Identities=31% Similarity=0.570 Sum_probs=75.8
Q ss_pred EEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChhhHHHHHHHHH
Q 004772 214 VFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKWCLDELVKILD 293 (731)
Q Consensus 214 vFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~ 293 (731)
|||||+++| ..+|.+|.+.|++.|+++|+|. + +.+|+.+.++|.++|++|+.+|+++|++|..|.||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~-~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-D-IPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-E-E-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-e-CCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH-
Confidence 899999999 5689999999999999999997 7 9999999999999999999999999999999999999998872
Q ss_pred HHhhcCCCEEEEEEEeecCCc
Q 004772 294 CLIKNTGQIVVPVFYRIDSSD 314 (731)
Q Consensus 294 ~~~~~~~~~vlPv~~~vdpsd 314 (731)
..++.++||. +++.+
T Consensus 76 ----~~~~~iipv~--~~~~~ 90 (102)
T PF13676_consen 76 ----KRGKPIIPVR--LDPCE 90 (102)
T ss_dssp ----CTSESEEEEE--CSGGG
T ss_pred ----HCCCEEEEEE--ECCcC
Confidence 3456899997 44443
No 13
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.48 E-value=3e-12 Score=143.02 Aligned_cols=297 Identities=13% Similarity=0.163 Sum_probs=194.1
Q ss_pred CCCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHH
Q 004772 380 SDSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 380 ~~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
.+|..+.+.|-|...+..|.+. .+.|.+.|+.|+|.|||||+.+++. ....-..+.|+.......+ ...+.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dnd---p~rF~ 83 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDND---PARFL 83 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCC---HHHHH
Confidence 4566677888898766666543 3589999999999999999999988 4445567889875444433 34444
Q ss_pred HHHHHhhhcCCcc--------------cCCCCcHHHHHHHHc--CCCcEEEEeccCCch-----hHhhhhcCCCCCCCEE
Q 004772 460 DEVISQVMGENIK--------------IGTPTITPNIKKRLQ--QRKVLIVLHDVDDNS-----KSFAVCLDLFSPGSRI 518 (731)
Q Consensus 460 ~~ll~~l~~~~~~--------------~~~~~~~~~l~~~L~--~k~~LLVLDdv~~~~-----~~l~~~~~~~~~gs~I 518 (731)
..++..+..-.+. .+...+...+...+. .++++|||||.+-.. ..+..++...+++...
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l 163 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL 163 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence 4444443321111 111112333333333 468999999996544 4555666777899999
Q ss_pred EEEeCChhhhhhc---CCceEEE----cCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 004772 519 IITTRDKRLLYKR---GVQSVCE----VKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLY 591 (731)
Q Consensus 519 IiTTR~~~v~~~~---~~~~~~~----l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~ 591 (731)
|+|||...-+... -....++ .-.++.+|+.++|..... .+-....++.+.+.++|.+-|+.+++=.++
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9999976322111 0112223 346899999999987751 122334578999999999999999887776
Q ss_pred CCCHHHHHHHHHHhcCCCCccHHHH-HHHcHhCCCHHHHHHHHHcccccCCcChhHHHhhhcCcchHHHHHHHHHHCcCc
Q 004772 592 QKSKEQWKDKLHKLKLITDPNIYKV-LKISYDGLNWEEKEIFLDVACFFKGEDVDFVTRVQDDPTSMRNGLNILVEKSLI 670 (731)
Q Consensus 592 ~~~~~~w~~~l~~l~~~~~~~i~~~-l~~s~~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~l~~L~~~sLi 670 (731)
+.+..+ .....+.-. ...+.+. ...-++.||++.+..++.+|++. .++-+....+ .+..+....++.|.+++|.
T Consensus 239 ~~~~~~--q~~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~L-tg~~ng~amLe~L~~~gLF 313 (894)
T COG2909 239 NNTSAE--QSLRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNAL-TGEENGQAMLEELERRGLF 313 (894)
T ss_pred CCCcHH--HHhhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHH-hcCCcHHHHHHHHHhCCCc
Confidence 332221 111111111 2234443 34678999999999999999983 3333333333 3445677889999999987
Q ss_pred eee----CCeEEehHHHHHHHHHHHhhcC
Q 004772 671 TIS----DNRLQMHDMLQEIGKTIIRQES 695 (731)
Q Consensus 671 ~~~----~~~~~mHdlvr~~a~~~~~~e~ 695 (731)
-.. +++|+.|.|+.+|.+.....+.
T Consensus 314 l~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 314 LQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred eeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 643 6689999999999999887753
No 14
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.46 E-value=2.2e-14 Score=125.47 Aligned_cols=87 Identities=31% Similarity=0.578 Sum_probs=74.6
Q ss_pred EEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccccHHHHHHHHH
Q 004772 19 VFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTWCLDELVRILD 98 (731)
Q Consensus 19 vFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~wc~~El~~~~~ 98 (731)
|||||+++|. .++..|...|++.|+++|+|. ++..|+.+..+|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~--~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~ 76 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR--DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK 76 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG--EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE--eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence 8999999994 699999999999999999994 688999999999999999999999999999999999999998844
Q ss_pred hhhhcCCeeEeEEee
Q 004772 99 CKKRNGQTVVPVFYK 113 (731)
Q Consensus 99 ~~~~~~~~v~Pify~ 113 (731)
.+..|+||..+
T Consensus 77 ----~~~~iipv~~~ 87 (102)
T PF13676_consen 77 ----RGKPIIPVRLD 87 (102)
T ss_dssp ----TSESEEEEECS
T ss_pred ----CCCEEEEEEEC
Confidence 34479999854
No 15
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.41 E-value=4.4e-12 Score=149.68 Aligned_cols=320 Identities=16% Similarity=0.239 Sum_probs=198.9
Q ss_pred cccchhhHHHHHHhhhhc-CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccc----ccccccHHHHHHHH
Q 004772 388 FVGLNSRIEKIKSLLCLE-LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGE----ESSKMGVIHVRDEV 462 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~----~~~~~~~~~l~~~l 462 (731)
++||+.+++.|...+..- .+...++.+.|.+|||||+|+.++...+.+.+ ..++..... ..+-..+....+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHHH
Confidence 799999999999988754 34477999999999999999999998876652 222211111 11111122222233
Q ss_pred HHhh-------------------hcCCc------------------cc--CCCCcH--------HHHHHHH-cCCCcEEE
Q 004772 463 ISQV-------------------MGENI------------------KI--GTPTIT--------PNIKKRL-QQRKVLIV 494 (731)
Q Consensus 463 l~~l-------------------~~~~~------------------~~--~~~~~~--------~~l~~~L-~~k~~LLV 494 (731)
..++ +.... .. ...... ..+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 2221 11000 00 000000 1112222 35699999
Q ss_pred EeccCCchhH----hhhhcCCCC------CCCEEEEEeCCh--hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 004772 495 LHDVDDNSKS----FAVCLDLFS------PGSRIIITTRDK--RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRS 562 (731)
Q Consensus 495 LDdv~~~~~~----l~~~~~~~~------~gs~IIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 562 (731)
+||+++.+.. +........ .....+.|.+.. ...........+.|.||+..+...|........ .
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~---~ 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT---K 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---c
Confidence 9999777622 111111111 112233333332 122223344688999999999999998887321 2
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHhcCC-------CHHHHHHHHHHhcCCC-CccHHHHHHHcHhCCCHHHHHHHHH
Q 004772 563 PDLLELSEEVAHYANGNPLALQVLGSSLYQK-------SKEQWKDKLHKLKLIT-DPNIYKVLKISYDGLNWEEKEIFLD 634 (731)
Q Consensus 563 ~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~s~~~L~~~~k~~fl~ 634 (731)
....+....++++..|+|+.+.++-..+... +...|..-...+.... .+++...+...++.||...++++..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3344678899999999999999999888653 2344554444433222 2235667899999999999999999
Q ss_pred cccccCCcChhHHHhhhcCcc--hHHHHHHHHHHCcCceee--------CC---eEEehHHHHHHHHHHHhhcCCCCCCC
Q 004772 635 VACFFKGEDVDFVTRVQDDPT--SMRNGLNILVEKSLITIS--------DN---RLQMHDMLQEIGKTIIRQESFKEPGK 701 (731)
Q Consensus 635 la~f~~~~~~~~l~~~~~~~~--~~~~~l~~L~~~sLi~~~--------~~---~~~mHdlvr~~a~~~~~~e~~~~~~~ 701 (731)
.||+.+.++.+.+..+..... .+...+..|....++..+ .. +-..|+++|+.+...+.+. +
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------~ 390 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------Q 390 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------h
Confidence 999999999999999887544 555556666655555421 11 1147999999998774433 3
Q ss_pred cccccCcccHHHHHhcCCC
Q 004772 702 RSKLWDHKDVYQVLKKNKQ 720 (731)
Q Consensus 702 r~rl~~~~~i~~~l~~~~~ 720 (731)
|. ..|..|...|+.+..
T Consensus 391 rq--~~H~~i~~lL~~~~~ 407 (849)
T COG3899 391 RQ--YLHLRIGQLLEQNIP 407 (849)
T ss_pred HH--HHHHHHHHHHHHhCC
Confidence 33 448888888887664
No 16
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=3.1e-10 Score=124.80 Aligned_cols=284 Identities=15% Similarity=0.101 Sum_probs=164.6
Q ss_pred CCCCCCCCCcccchhhHHHHHHhhhhc--CCCeEEEEEEccCCchhhHHHHHHHHHhcccCc--ceEEEeeccccccccc
Q 004772 379 MSDSTDLSGFVGLNSRIEKIKSLLCLE--LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ--GKCFMKNVGEESSKMG 454 (731)
Q Consensus 379 ~~~~~~~~~fvGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~ 454 (731)
..+...++.|+||+.++++|...|... .+..+.+.|+|++|+|||++++.+++.+..... ..+++. ......
T Consensus 23 l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~ 98 (394)
T PRK00411 23 LEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRT 98 (394)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCC
Confidence 344556788999999999999998543 233456789999999999999999998765542 233333 222234
Q ss_pred HHHHHHHHHHhhhcCCccc---CCCCcHHHHHHHHc--CCCcEEEEeccCCch-----hHhhhhcCCC--CCC--CEEEE
Q 004772 455 VIHVRDEVISQVMGENIKI---GTPTITPNIKKRLQ--QRKVLIVLHDVDDNS-----KSFAVCLDLF--SPG--SRIII 520 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~---~~~~~~~~l~~~L~--~k~~LLVLDdv~~~~-----~~l~~~~~~~--~~g--s~IIi 520 (731)
...++..++.++....... ........+.+.+. +++++||||+++... +.+..+..+. .++ ..+|.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~ 178 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEE
Confidence 4566667777665422111 11124455555554 456899999998753 2222222221 123 23555
Q ss_pred EeCChhhhhhc-------CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHH----hCCChHHHHHHHHH
Q 004772 521 TTRDKRLLYKR-------GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHY----ANGNPLALQVLGSS 589 (731)
Q Consensus 521 TTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~----~~GlPLal~~~~~~ 589 (731)
++....+.... -....+.+++++.++..+++..++-..........+....+++. .|..+.|+..+-..
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 65544322111 11246789999999999999987632111111122333444444 45577777765432
Q ss_pred h--c---CC---CHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHcccccC----CcChhHHH-------hh
Q 004772 590 L--Y---QK---SKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFK----GEDVDFVT-------RV 650 (731)
Q Consensus 590 L--~---~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~----~~~~~~l~-------~~ 650 (731)
. . +. +.+....+++... .......+..||.+++.++..++.... ......+. ..
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 2 1 11 3445555555441 233456788999999988887664431 22222221 11
Q ss_pred hcCc----chHHHHHHHHHHCcCceee
Q 004772 651 QDDP----TSMRNGLNILVEKSLITIS 673 (731)
Q Consensus 651 ~~~~----~~~~~~l~~L~~~sLi~~~ 673 (731)
.+.. ......++.|...|||...
T Consensus 332 ~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 2221 2567789999999999864
No 17
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=1.4e-09 Score=118.34 Aligned_cols=282 Identities=15% Similarity=0.094 Sum_probs=160.4
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhc--CCCeEEEEEEccCCchhhHHHHHHHHHhcccCc------ceEEEeeccccccc
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCLE--LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ------GKCFMKNVGEESSK 452 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~ 452 (731)
+...++.|+||+.++++|...|... ....+.+.|+|++|+|||++++.+++.+..... ..+++. ....
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQIL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCC
Confidence 3445678999999999999998642 233567899999999999999999987653322 233444 2222
Q ss_pred ccHHHHHHHHHHhhh---cCCcc--cCCCCcHHHHHHHHc--CCCcEEEEeccCCch----hHhhhhcCC---C---CCC
Q 004772 453 MGVIHVRDEVISQVM---GENIK--IGTPTITPNIKKRLQ--QRKVLIVLHDVDDNS----KSFAVCLDL---F---SPG 515 (731)
Q Consensus 453 ~~~~~l~~~ll~~l~---~~~~~--~~~~~~~~~l~~~L~--~k~~LLVLDdv~~~~----~~l~~~~~~---~---~~g 515 (731)
.....++..++.++. ...+. .+..+....+.+.+. +++++||||+++... +.+..+..+ . +..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 334556666666653 11111 111113344445553 567899999998873 222222222 1 123
Q ss_pred CEEEEEeCChhhhhhc------C-CceEEEcCCCCHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 516 SRIIITTRDKRLLYKR------G-VQSVCEVKGLKHNSALELFCRKAFR---QNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 516 s~IIiTTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~L~~~~~~~---~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
..+|.++......... . ....+.+++++.++..+++..++-. .....+...+.+..++..+.|.|..+..
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 3455555433221111 1 1246789999999999999988731 1112233334555677777788855433
Q ss_pred HHHHh---c---C---CCHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHcccccCC----cChh-------
Q 004772 586 LGSSL---Y---Q---KSKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFKG----EDVD------- 645 (731)
Q Consensus 586 ~~~~L---~---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~~----~~~~------- 645 (731)
+.... . + -+.+....+.+.+. ......++..||.+++.++..++..... ....
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 32211 1 1 13344444444331 2344567789999988887766643221 1111
Q ss_pred HHHhhhcC--c--chHHHHHHHHHHCcCceee
Q 004772 646 FVTRVQDD--P--TSMRNGLNILVEKSLITIS 673 (731)
Q Consensus 646 ~l~~~~~~--~--~~~~~~l~~L~~~sLi~~~ 673 (731)
.+..-.+. . ....+.+..|...|||+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11111111 1 1678889999999999875
No 18
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.26 E-value=2.7e-10 Score=120.67 Aligned_cols=267 Identities=14% Similarity=0.149 Sum_probs=148.0
Q ss_pred CCcccchhhHHHHHHhhhhc---CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLE---LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
..|+|+++.+++|..++... ....+.+.|+|++|+|||+||+.+++.+...+. ... .........+ ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~~~~~~l----~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPALEKPGDL----AAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchhcCchhH----HHH
Confidence 46999999999999988642 223556889999999999999999988754321 111 0000111111 111
Q ss_pred HHhhhcCC-cccC-----CCCcHHHHHHHHcCCCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhhhhhc--CCc
Q 004772 463 ISQVMGEN-IKIG-----TPTITPNIKKRLQQRKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRLLYKR--GVQ 534 (731)
Q Consensus 463 l~~l~~~~-~~~~-----~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~--~~~ 534 (731)
+..+.... .-++ .....+.+...+.+.+..+|+++..+... .....++.+-|..||+...+.... ...
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARS----VRLDLPPFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccc----eeecCCCeEEEEecCCccccCHHHHhhcc
Confidence 11111100 0000 00112233333344444444443322110 001122344455677754332221 123
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHH-HhcCCCCc--
Q 004772 535 SVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLH-KLKLITDP-- 611 (731)
Q Consensus 535 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~-~l~~~~~~-- 611 (731)
..+.+++++.++..+++.+.+... ......+....|++.|+|.|-.+..++..+. ..... ........
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~--~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~~~~~~~it~~~v 222 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLL--NVEIEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQVRGQKIINRDIA 222 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHHHcCCCCcCHHHH
Confidence 567999999999999999887432 2233456778999999999987766555331 11000 00000111
Q ss_pred -cHHHHHHHcHhCCCHHHHHHHH-HcccccC-CcChhHHHhhhcCcc-hHHHHHH-HHHHCcCceee
Q 004772 612 -NIYKVLKISYDGLNWEEKEIFL-DVACFFK-GEDVDFVTRVQDDPT-SMRNGLN-ILVEKSLITIS 673 (731)
Q Consensus 612 -~i~~~l~~s~~~L~~~~k~~fl-~la~f~~-~~~~~~l~~~~~~~~-~~~~~l~-~L~~~sLi~~~ 673 (731)
.....+...+..|++..+..+. .++.+.. +...+.+...++... .++..++ .|++++||...
T Consensus 223 ~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 223 LKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 1122244567788888887776 3354543 356667777776655 7777788 69999999754
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.24 E-value=8.1e-11 Score=119.26 Aligned_cols=195 Identities=23% Similarity=0.236 Sum_probs=101.1
Q ss_pred cccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH------HHH
Q 004772 388 FVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV------RDE 461 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~ 461 (731)
|+||++|+++|.+++..+. .+.+.|+|+.|+|||+|++.+.+.........+|+........ ...... ...
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 7999999999999997543 4678899999999999999999987544334444432211111 111111 011
Q ss_pred HHHhhhcCCcc-----------cCCCCcHHHHHHHHc--CCCcEEEEeccCCch------h----HhhhhcCC--CCCCC
Q 004772 462 VISQVMGENIK-----------IGTPTITPNIKKRLQ--QRKVLIVLHDVDDNS------K----SFAVCLDL--FSPGS 516 (731)
Q Consensus 462 ll~~l~~~~~~-----------~~~~~~~~~l~~~L~--~k~~LLVLDdv~~~~------~----~l~~~~~~--~~~gs 516 (731)
+...+...... .........+.+.+. +++++||+||++... . .+...... .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 11111111100 111123333334443 346999999996654 1 11112211 12334
Q ss_pred EEEEEeCChhhhhh--------cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 517 RIIITTRDKRLLYK--------RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 517 ~IIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.+|++.....+... .+....+.|++|+.+++.+++....-..... +...+..++++..+||+|..|..+
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 45555544433322 2233458999999999999998865222111 234567799999999999998753
No 20
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.23 E-value=1.4e-10 Score=123.67 Aligned_cols=272 Identities=15% Similarity=0.129 Sum_probs=152.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhc---CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLE---LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
|....+|+|++..++.|..++... ....+.+.|+|++|+|||+||+.+++.+...+. +.. ....... ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~----~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKP----GD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccCh----HH
Confidence 445677999999999998887632 233567889999999999999999998754321 111 0000000 11
Q ss_pred HHHHHHhhhcCC-cccCC-----CCcHHHHHHHHcCCCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhhhhhc-
Q 004772 459 RDEVISQVMGEN-IKIGT-----PTITPNIKKRLQQRKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRLLYKR- 531 (731)
Q Consensus 459 ~~~ll~~l~~~~-~~~~~-----~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~- 531 (731)
+..++..+.... .-++. ....+.+...+.+.+..+++|+..+... .....++.+-|..|++...+....
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~----~~~~l~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS----IRLDLPPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc----eeecCCCceEEeecCCcccCCHHHH
Confidence 112221111100 00000 0011222233333333333433222110 000112334455666654332211
Q ss_pred -CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCC
Q 004772 532 -GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLHKLKLITD 610 (731)
Q Consensus 532 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~ 610 (731)
.....+.+++++.++..+++.+.+... ......+.+..|++.|+|.|-.+..+...+. .|.... .......
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-~~~~I~~ 240 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARIL--GVEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-GDGVITK 240 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-CCCCCCH
Confidence 123568999999999999999887432 2234456789999999999976666555331 111110 0000111
Q ss_pred cc---HHHHHHHcHhCCCHHHHHHHH-Hccccc-CCcChhHHHhhhcCcc-hHHHHHH-HHHHCcCceee
Q 004772 611 PN---IYKVLKISYDGLNWEEKEIFL-DVACFF-KGEDVDFVTRVQDDPT-SMRNGLN-ILVEKSLITIS 673 (731)
Q Consensus 611 ~~---i~~~l~~s~~~L~~~~k~~fl-~la~f~-~~~~~~~l~~~~~~~~-~~~~~l~-~L~~~sLi~~~ 673 (731)
.. ....+...+..|++..+..+. .+..|. .+...+.++..++... .+++.++ .|++.+||+..
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 11 223344567788888888875 555554 3467777887776655 7777888 99999999765
No 21
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=2.2e-09 Score=111.55 Aligned_cols=177 Identities=12% Similarity=0.170 Sum_probs=106.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHH---
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKR--- 485 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~--- 485 (731)
.+.+.|+|++|+|||||++.++......--..+++. ........++..+...++......+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999988653211122322 112334556666666654432221111122233322
Q ss_pred --HcCCCcEEEEeccCCch----hHhhhhcCCC---CCCCEEEEEeCChh--hhh-------hcCCceEEEcCCCCHHHH
Q 004772 486 --LQQRKVLIVLHDVDDNS----KSFAVCLDLF---SPGSRIIITTRDKR--LLY-------KRGVQSVCEVKGLKHNSA 547 (731)
Q Consensus 486 --L~~k~~LLVLDdv~~~~----~~l~~~~~~~---~~gs~IIiTTR~~~--v~~-------~~~~~~~~~l~~L~~~ea 547 (731)
..+++.+||+||++... +.+..+.... .....|++|..... .+. .......+.+++|+.+|.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 25678999999998865 2222222211 12234556654321 111 011234678999999999
Q ss_pred HHHHHHhhhcCC--CCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 548 LELFCRKAFRQN--NRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 548 ~~L~~~~~~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
.+++...+.... ....-..+..+.|++.++|+|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988763221 1223456788999999999999999998866
No 22
>PF05729 NACHT: NACHT domain
Probab=99.05 E-value=1.9e-09 Score=102.90 Aligned_cols=141 Identities=18% Similarity=0.264 Sum_probs=85.1
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCc-----ceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQ-----GKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKK 484 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 484 (731)
|++.|+|.+|+||||+++.++..+..... ...++...+..........+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 57899999999999999999987765431 1222322222222221122333332222221111 1112222
Q ss_pred -HHcCCCcEEEEeccCCchh------------HhhhhcCC-CCCCCEEEEEeCChhh---hhhcCCceEEEcCCCCHHHH
Q 004772 485 -RLQQRKVLIVLHDVDDNSK------------SFAVCLDL-FSPGSRIIITTRDKRL---LYKRGVQSVCEVKGLKHNSA 547 (731)
Q Consensus 485 -~L~~k~~LLVLDdv~~~~~------------~l~~~~~~-~~~gs~IIiTTR~~~v---~~~~~~~~~~~l~~L~~~ea 547 (731)
....++++||||+++.... .+...... ..+++++|||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2256799999999977652 12222332 3568999999998654 33344456889999999999
Q ss_pred HHHHHHhh
Q 004772 548 LELFCRKA 555 (731)
Q Consensus 548 ~~L~~~~~ 555 (731)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
No 23
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.02 E-value=5.3e-10 Score=116.50 Aligned_cols=279 Identities=21% Similarity=0.247 Sum_probs=191.5
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
..+.+.++|.|||||||++.++.+ +...|....++.+....+++..+....... ++-.. .+.......+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~---~gl~~--~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGA---LGLHV--QPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhh---ccccc--ccchHHHHHHHHHHh
Confidence 367899999999999999999999 888898888777666655544443332221 22111 111224556778888
Q ss_pred CCCcEEEEeccCCchhH---hhhhcCCCCCCCEEEEEeCChhhhhhcCCceEEEcCCCCHH-HHHHHHHHhhhcCC---C
Q 004772 488 QRKVLIVLHDVDDNSKS---FAVCLDLFSPGSRIIITTRDKRLLYKRGVQSVCEVKGLKHN-SALELFCRKAFRQN---N 560 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~~~---l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~---~ 560 (731)
+++.++|+||.....+. +...+....+...|+.|+|+... ......+.+++|+.. ++.++|...+.... -
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 99999999999776522 22222333455678999997533 233456778888776 78899887763211 1
Q ss_pred CChhHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHH----hcCC------CCccHHHHHHHcHhCCCHHHHH
Q 004772 561 RSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLHK----LKLI------TDPNIYKVLKISYDGLNWEEKE 630 (731)
Q Consensus 561 ~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~s~~~L~~~~k~ 630 (731)
...........|.+...|.||+|..+++..+.....+...-++. +... ........|.+||.-|...++-
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 23334567789999999999999999999888766554433332 2211 1234567899999999999999
Q ss_pred HHHHcccccCCcChhHHHhhhcCcc------hHHHHHHHHHHCcCceee----CCeEEehHHHHHHHHHHHhhcC
Q 004772 631 IFLDVACFFKGEDVDFVTRVQDDPT------SMRNGLNILVEKSLITIS----DNRLQMHDMLQEIGKTIIRQES 695 (731)
Q Consensus 631 ~fl~la~f~~~~~~~~l~~~~~~~~------~~~~~l~~L~~~sLi~~~----~~~~~mHdlvr~~a~~~~~~e~ 695 (731)
.|..++.|...++............ ....++..|++++++... .-.|+.-+-++.|+.+.+.+..
T Consensus 244 ~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 244 LFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999888774333322211 566778889999998775 2357778888888888777643
No 24
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.9e-08 Score=104.27 Aligned_cols=175 Identities=22% Similarity=0.300 Sum_probs=106.0
Q ss_pred CCCCCCcccchhhHH---HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIE---KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~---~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
|...+++||.+..+. -|..++. ++...-..+||++|+||||||+.++......|...-= ...+..++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA--------v~~gvkdl 89 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA--------VTSGVKDL 89 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc--------ccccHHHH
Confidence 445566777766553 2334443 3346677899999999999999999987766632111 11222222
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchhHh-hhhcCCCCCCCEEEE--EeCChhhh---hhcC
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKSF-AVCLDLFSPGSRIII--TTRDKRLL---YKRG 532 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l-~~~~~~~~~gs~IIi--TTR~~~v~---~~~~ 532 (731)
+.++.. .-.....+++++|++|.|+.....- ..+++....|.-|+| ||-|+... ....
T Consensus 90 -r~i~e~---------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 90 -REIIEE---------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred -HHHHHH---------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 122111 1122334789999999999887433 334555667776666 77776321 1122
Q ss_pred CceEEEcCCCCHHHHHHHHHHhhhcC-CC----CChhHHHHHHHHHHHhCCChHH
Q 004772 533 VQSVCEVKGLKHNSALELFCRKAFRQ-NN----RSPDLLELSEEVAHYANGNPLA 582 (731)
Q Consensus 533 ~~~~~~l~~L~~~ea~~L~~~~~~~~-~~----~~~~~~~~~~~i~~~~~GlPLa 582 (731)
...++.+++|+.++-.+++.+-+... .. .....++....++..++|--.+
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 34689999999999999998843211 11 1112345667788888876443
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.85 E-value=7.5e-08 Score=106.00 Aligned_cols=183 Identities=21% Similarity=0.242 Sum_probs=109.4
Q ss_pred CCCCCCcccchhhHHH---HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIEK---IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~---L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
|....+++|++..+.. |..++..+ ..+.+.|+|++|+||||||+.+++.....|. .+.. . ..+.. .
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a---~--~~~~~-~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSA---V--TSGVK-D 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEec---c--cccHH-H
Confidence 3445679999988777 77777533 3557889999999999999999987755441 1110 0 01111 1
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchh-HhhhhcCCCCCCCEEEE--EeCChh--hhh-hcC
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSK-SFAVCLDLFSPGSRIII--TTRDKR--LLY-KRG 532 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~-~l~~~~~~~~~gs~IIi--TTR~~~--v~~-~~~ 532 (731)
.+.++.... .....+++.+|+||+++.... ....++.....+..++| ||.+.. +.. ...
T Consensus 77 ir~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 77 LREVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhc
Confidence 112211110 011135788999999987752 12222233344555554 344432 111 112
Q ss_pred CceEEEcCCCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 533 VQSVCEVKGLKHNSALELFCRKAFRQNNRS-PDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 533 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
....+.+.+++.++...++.+.+....... ....+....+++.++|.|..+..+...+
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 236789999999999999988653211111 3345677889999999998776655443
No 26
>PRK06893 DNA replication initiation factor; Validated
Probab=98.84 E-value=6.7e-08 Score=97.47 Aligned_cols=152 Identities=12% Similarity=0.132 Sum_probs=96.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
.+.+.|+|++|+|||+|+..+++....+...+.|+.. .. ...... .+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~---~~~~~~--------------------~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SK---SQYFSP--------------------AVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HH---hhhhhH--------------------HHHhhcc-
Confidence 4578899999999999999999987666556667651 10 000000 1111122
Q ss_pred CCcEEEEeccCCch------hHhhhhcCC-CCCCCEEEE-EeCC---------hhhhhhcCCceEEEcCCCCHHHHHHHH
Q 004772 489 RKVLIVLHDVDDNS------KSFAVCLDL-FSPGSRIII-TTRD---------KRLLYKRGVQSVCEVKGLKHNSALELF 551 (731)
Q Consensus 489 k~~LLVLDdv~~~~------~~l~~~~~~-~~~gs~IIi-TTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L~ 551 (731)
+.-+|+|||++... ..+...+.. ...|..+|+ |+.. +.+...+.....+++++++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23589999998643 112222221 234556654 4543 244455555678899999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 552 CRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
.+.+.... ..-.++...-|++.+.|..-.+..+-..|
T Consensus 171 ~~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98886432 23345778889999988887776665544
No 27
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=5.1e-07 Score=102.56 Aligned_cols=281 Identities=12% Similarity=0.084 Sum_probs=145.9
Q ss_pred CCCCCCCcccchhhHHHHHHhhhh---cCCCeEEEEEEccCCchhhHHHHHHHHHhccc-----Cc--ceEEEeeccccc
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCL---ELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-----FQ--GKCFMKNVGEES 450 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~~~~~~~~~~ 450 (731)
+...|+.+.||+.|+++|...|.. +++...++.|+|++|.|||++++.+..++... .+ ..+++. +.
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm 825 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GM 825 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CC
Confidence 344567899999999999998864 23334577899999999999999998876432 12 123443 22
Q ss_pred ccccHHHHHHHHHHhhhcCCcccCC--CCcHHHHHHHHc---CCCcEEEEeccCCch----hHhhhhcCCC-CCCCEEEE
Q 004772 451 SKMGVIHVRDEVISQVMGENIKIGT--PTITPNIKKRLQ---QRKVLIVLHDVDDNS----KSFAVCLDLF-SPGSRIII 520 (731)
Q Consensus 451 ~~~~~~~l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L~---~k~~LLVLDdv~~~~----~~l~~~~~~~-~~gs~IIi 520 (731)
.......+...+..++....+.... ......+...+. ....+||||+++... +.+..++.+. ..+++|++
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 2233444455555555332221111 112233333332 124589999998764 3333333332 23555444
Q ss_pred --EeCCh--------hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCC-CCChhHHH-HHHHHHHHhCCChHHHHHHHH
Q 004772 521 --TTRDK--------RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQN-NRSPDLLE-LSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 521 --TTR~~--------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~-~~~~i~~~~~GlPLal~~~~~ 588 (731)
.+... .+...++ ...+..++++.++-.+++..++-... ...+...+ +|+.++...|..=.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 33221 1112222 22356799999999999999984221 11222222 223333333445566665544
Q ss_pred HhcC--C---CHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHcccccCC-----cChh-------HHHh--
Q 004772 589 SLYQ--K---SKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFKG-----EDVD-------FVTR-- 649 (731)
Q Consensus 589 ~L~~--~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~~-----~~~~-------~l~~-- 649 (731)
.... . ..+....+...+. ...+......||.+.+-+|..+...... +... .+..
T Consensus 985 AgEikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~ 1057 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETS 1057 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhh
Confidence 3321 1 1222223322221 1223445678888888777644433221 1111 1222
Q ss_pred --hhcCcc---hHHHHHHHHHHCcCceee
Q 004772 650 --VQDDPT---SMRNGLNILVEKSLITIS 673 (731)
Q Consensus 650 --~~~~~~---~~~~~l~~L~~~sLi~~~ 673 (731)
.++.+. .....|.+|...|+|...
T Consensus 1058 Gk~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1058 GKYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 111222 355667778888887765
No 28
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.72 E-value=3.8e-07 Score=92.04 Aligned_cols=173 Identities=17% Similarity=0.208 Sum_probs=104.4
Q ss_pred CCccc--chhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHH
Q 004772 386 SGFVG--LNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVI 463 (731)
Q Consensus 386 ~~fvG--R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 463 (731)
++|++ .+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++..........++.. .. +......+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~----~~---~~~~~~~~- 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL----AE---LAQADPEV- 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH----HH---HHHhHHHH-
Confidence 45653 44567777777542 335688999999999999999999876544444455541 10 00000011
Q ss_pred HhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchh------HhhhhcCC-CCCCCEEEEEeCChh---------h
Q 004772 464 SQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSK------SFAVCLDL-FSPGSRIIITTRDKR---------L 527 (731)
Q Consensus 464 ~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~------~l~~~~~~-~~~gs~IIiTTR~~~---------v 527 (731)
...+.+ .-+|||||++.... .+...+.. ...+..+|+||+... +
T Consensus 85 -------------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 85 -------------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred -------------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 111222 34899999976541 12222111 123457888887432 1
Q ss_pred hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 528 LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 528 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
.........+++++++.++...++...+-... ..-..+....+++.++|+|..+..+...+
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22222245789999999999999987653221 22344667888889999999888776543
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.72 E-value=3.3e-07 Score=89.26 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhc---CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHH
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCLE---LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIH 457 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 457 (731)
.|....+|||.++.++.+.-++... .+...-+.+||++|+||||||.-+++.....|. +.+. ........+.
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~k~~dl~- 93 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIEKAGDLA- 93 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC--SCHHHH-
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhhhHHHHH-
Confidence 4556788999999999987666532 234667889999999999999999999876652 2220 0000111111
Q ss_pred HHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchhH----hhhhcCC--------CCCCC---------
Q 004772 458 VRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKS----FAVCLDL--------FSPGS--------- 516 (731)
Q Consensus 458 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~----l~~~~~~--------~~~gs--------- 516 (731)
.++ ..+ +++.+|.+|.++..... +...... -+++.
T Consensus 94 ---~il--------------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 94 ---AIL--------------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---HHH--------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---HHH--------------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 111 111 24557888999887622 2111111 12222
Q ss_pred --EEEEEeCChhhhhhc--CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 004772 517 --RIIITTRDKRLLYKR--GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLY 591 (731)
Q Consensus 517 --~IIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~ 591 (731)
-|=.|||...+...+ ...-+.+++..+.+|-.+++.+.+. ....+...+.+.+|+++|.|-|--..-+-..++
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~--~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR--ILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCH--CTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHH--HhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 244688865443222 2234568999999999999988762 223445667899999999999987666655544
No 30
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.68 E-value=3.8e-07 Score=98.08 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=110.4
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC-cc-eEEEeecccccccccHHHHH-
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF-QG-KCFMKNVGEESSKMGVIHVR- 459 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l~- 459 (731)
.....++|++..++.|.+++..+ ..+.+.++|++|+||||+|+.+++.+.... .. ...+... ..... ....+.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~-~~~~~-~~~~~~~ 87 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA-DFFDQ-GKKYLVE 87 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh-hhhhc-chhhhhc
Confidence 33467899999999999988643 234578999999999999999998765432 21 2233211 00000 000000
Q ss_pred -HHHHHhhhcCCcccCCCCcHHHHHHHH----c-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh
Q 004772 460 -DEVISQVMGENIKIGTPTITPNIKKRL----Q-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 460 -~~ll~~l~~~~~~~~~~~~~~~l~~~L----~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
.......... .. ........++..+ . ..+-+|||||++... ..+...+....+.+++|+|+.+.
T Consensus 88 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 88 DPRFAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred Ccchhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0000000000 00 0000112222211 1 234589999997764 22333333345567788877543
Q ss_pred h-hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 526 R-LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 526 ~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
. +... ......+++.+++.++...++.+.+-.... .-..+....+++.++|.+-.+.....
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 2221 122356789999999999999887633221 23456788899999998776654433
No 31
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=4e-06 Score=89.99 Aligned_cols=198 Identities=12% Similarity=0.060 Sum_probs=113.1
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC--cceEEEeecccccccccHHHH
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF--QGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l 458 (731)
.|....+++|.+...+.|.+.+..+. -+..+.++|+.|+||+++|..+++.+-.+- .......... .....+....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCCChH
Confidence 34556779999999999999886542 255688999999999999999998753211 1000000000 0000000011
Q ss_pred HHHHHHhhhcC----Cc---cc----CCCCcHHHHHHHH---c-----CCCcEEEEeccCCch----hHhhhhcCCCCCC
Q 004772 459 RDEVISQVMGE----NI---KI----GTPTITPNIKKRL---Q-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPG 515 (731)
Q Consensus 459 ~~~ll~~l~~~----~~---~~----~~~~~~~~l~~~L---~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~g 515 (731)
.+.+....... .. .. ...-.++.+++.. . +.+-++|+|+++... ..+...+...+++
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11121110000 00 00 0111334444332 2 456799999998876 3444555555556
Q ss_pred CEEEEEeCChh-hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 516 SRIIITTRDKR-LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 516 s~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
+.+|++|.+.. +... ......+.+.+++.++..+++...... ...+....++..++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~------~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD------LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 77777776653 3222 223467899999999999999876411 11122367899999999866554
No 32
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=1.6e-06 Score=98.23 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=112.5
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+...-. .. ....+.......
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~----~~-----~~PCG~C~sCr~ 81 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETG----VT-----SQPCGVCRACRE 81 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccC----CC-----CCCCcccHHHHH
Confidence 3445678999999999999986442 2456679999999999999999987632100 00 000011111111
Q ss_pred HHHhhhcCCcccC--CCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChhh
Q 004772 462 VISQVMGENIKIG--TPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKRL 527 (731)
Q Consensus 462 ll~~l~~~~~~~~--~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~v 527 (731)
+...-......++ .....+.+++.+ .++.-++|||+++.+. ..+...+.....+.++|+||.+..-
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 1110000000000 011122222222 2345589999998876 3344444445567888888876532
Q ss_pred -hhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh-HHHHHHH
Q 004772 528 -LYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP-LALQVLG 587 (731)
Q Consensus 528 -~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~~ 587 (731)
... ......+.+.+++.++..+.|.+.+.... .....+....|++.++|.. -+|..+-
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 211 22336789999999999999988763322 2234567788999998865 4555543
No 33
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.61 E-value=2.2e-06 Score=91.38 Aligned_cols=185 Identities=17% Similarity=0.179 Sum_probs=108.6
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
....+++|++..++.|..++..+. .+.+.|+|++|+||||+|+.+++.+........++.. . .+..... ......
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~-~-~~~~~~~-~~~~~~ 88 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL-N-ASDERGI-DVIRNK 88 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe-c-cccccch-HHHHHH
Confidence 334568999999999999886433 3457999999999999999999886433211112211 0 1111111 111111
Q ss_pred HHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhh-cCCceE
Q 004772 463 ISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYK-RGVQSV 536 (731)
Q Consensus 463 l~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~ 536 (731)
+..+....+. ....+-++++|+++... ..+...+....+.+++|+++... .+... ......
T Consensus 89 i~~~~~~~~~-------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 89 IKEFARTAPV-------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHHHhcCCC-------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 1111110000 01234589999997764 23444444455667777776432 11111 112346
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 004772 537 CEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLG 587 (731)
Q Consensus 537 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 587 (731)
+++.+++.++...++...+.... ..-..+....+++.++|.+.-+....
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~--~~i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEG--IEITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 79999999999999988774322 22345678889999999887654433
No 34
>PLN03025 replication factor C subunit; Provisional
Probab=98.60 E-value=1.6e-06 Score=92.28 Aligned_cols=184 Identities=16% Similarity=0.259 Sum_probs=108.1
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc-cCcceEEEeecccccccccHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG-DFQGKCFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~ 460 (731)
|....+++|.+..++.|..++..+. .+.+.++|++|+||||+|..+++.+.. .|...+.-.+ .+...+. ...+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~-~~vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGI-DVVR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccH-HHHH
Confidence 4445678999999999988775432 344679999999999999999988633 3321111110 1111111 1222
Q ss_pred HHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhh-cCCc
Q 004772 461 EVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYK-RGVQ 534 (731)
Q Consensus 461 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~ 534 (731)
..+..+....... ..++.-++|||+++... ..+.......+..+++|+++... .+... ....
T Consensus 83 ~~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 83 NKIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 2222211100000 01345699999998876 33444444455667777766442 22111 1123
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 535 SVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 535 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
..+++++++.++....+...+-.... .-..+....+++.++|..-.+..
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~gDlR~aln 199 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADGDMRQALN 199 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 57899999999999999887733221 22345678899999987754443
No 35
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.2e-06 Score=96.19 Aligned_cols=192 Identities=16% Similarity=0.096 Sum_probs=112.5
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|.....++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+-... +.. ..+-+.....+.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~-----~~pCg~C~sC~~ 80 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVT-----STPCEVCATCKA 80 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCC-----CCCCccCHHHHH
Confidence 3445679999999999999986442 256778999999999999999998763211 000 000000011111
Q ss_pred HHHhhhcCCc--ccCCCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-
Q 004772 462 VISQVMGENI--KIGTPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR- 526 (731)
Q Consensus 462 ll~~l~~~~~--~~~~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~- 526 (731)
+...-..... +.......+.+++.+ .++.-++|||+++... ..+...+...+++.++|++|.+..
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 1110000000 000001222222222 2456689999998875 344444444456677887776542
Q ss_pred hhh-hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 527 LLY-KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 527 v~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
+.. .......+++.+++.++..+.+.+.+-... .....+....|++.++|.+..+..
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 211 122346789999999999999988773322 223456678899999998755443
No 36
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.59 E-value=1e-06 Score=88.95 Aligned_cols=172 Identities=16% Similarity=0.194 Sum_probs=99.9
Q ss_pred CCCCcc-cchhhH-HHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 384 DLSGFV-GLNSRI-EKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 384 ~~~~fv-GR~~el-~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
..++|+ |...+. ..+.++.. +....+.+.|+|++|+|||+||..+++.....-....++.. .. ....
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~----~~------~~~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA----AS------PLLA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh----HH------hHHH
Confidence 345566 544433 44444433 22335678899999999999999999876443334444441 10 0000
Q ss_pred HHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCC-CCCC-EEEEEeCChhh--------
Q 004772 462 VISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLF-SPGS-RIIITTRDKRL-------- 527 (731)
Q Consensus 462 ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~-~~gs-~IIiTTR~~~v-------- 527 (731)
+ .. ....-+||+||++... ..+...+... ..+. .+|+|++....
T Consensus 85 ~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 F---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred H---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 01 1234479999997654 2222222211 2333 36666664321
Q ss_pred hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 528 LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 528 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
...+.....+++++++.++-..++.+.+-... ..-.++..+.+++.+.|++..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11222346789999999987777776542211 23345678888999999999988877655
No 37
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2.4e-06 Score=92.46 Aligned_cols=193 Identities=15% Similarity=0.105 Sum_probs=110.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...... ...+.+.......
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~---------~~~pc~~c~~c~~ 81 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI---------TSNPCRKCIICKE 81 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC---------CCCCCCCCHHHHH
Confidence 3445678999999999999886442 35677899999999999999999876421100 0000000000111
Q ss_pred HHHhhhcCCc--ccCCCCcHHHHH---HHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-h
Q 004772 462 VISQVMGENI--KIGTPTITPNIK---KRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-R 526 (731)
Q Consensus 462 ll~~l~~~~~--~~~~~~~~~~l~---~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~ 526 (731)
+......... +.......+.++ +.+ .+++-++|+|+++... ..+...+...++..++|++|.+. .
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 1110000000 000001111122 121 1345599999998876 23444444445566777766544 3
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
+... ......+++.+++.++..+.+...+-... .....+.+..|++.++|.|..+...
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 22346789999999999999888763322 2233456788999999988654443
No 38
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.58 E-value=3.7e-07 Score=95.09 Aligned_cols=144 Identities=19% Similarity=0.369 Sum_probs=102.9
Q ss_pred CCCceeEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccC-------
Q 004772 13 AKSKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAY------- 85 (731)
Q Consensus 13 ~~~~~dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~------- 85 (731)
.+.+.|||||||..- .+-.++-+...|.-+|++||||-+ .+..| .+...+.+.|...+.+|.|+|||...
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVd-KL~AG-KFdssLlkni~aAkhFiLVLtP~sLDr~lnD~n 685 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVD-KLYAG-KFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN 685 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehh-hhhcc-cccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence 357889999998754 455777777788899999999975 56666 56778999999999999999999653
Q ss_pred -ccccHHHHHHHHHhhhhcCCeeEeEEeecCccccccccCcHHHHHHhhhhcCCChhHHHHHHHHHHHhhcccccccCCC
Q 004772 86 -STWCLDELVRILDCKKRNGQTVVPVFYKVSPPAVRKQRLSFGEAFVHHESNFSDKVQVQKWRDSLTQASNISGFYASRS 164 (731)
Q Consensus 86 -S~wc~~El~~~~~~~~~~~~~v~Pify~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 164 (731)
-.|.-+||.-+.+|.++ |||||-. -|. |-.-+. .+. +-+.-+....|....+.
T Consensus 686 CeDWVHKEl~~Afe~~KN----IiPI~D~-----------aFE--~Pt~ed------~iP---nDirmi~kyNGvKWvHd 739 (832)
T KOG3678|consen 686 CEDWVHKELKCAFEHQKN----IIPIFDT-----------AFE--FPTKED------QIP---NDIRMITKYNGVKWVHD 739 (832)
T ss_pred HHHHHHHHHHHHHHhcCC----eeeeecc-----------ccc--CCCchh------cCc---HHHHHHHhccCeeeehh
Confidence 46888999999998875 9999832 010 000111 111 22344556677443333
Q ss_pred CCCHHHHHHHHHHhhhhhhccCC
Q 004772 165 FRNDAELVEKIAEDISKKLKDMA 187 (731)
Q Consensus 165 ~~~~~~~i~~iv~~v~~~l~~~~ 187 (731)
....-++|||+-+...+++-.
T Consensus 740 --YQdA~maKvvRFitGe~nRtt 760 (832)
T KOG3678|consen 740 --YQDACMAKVVRFITGELNRTT 760 (832)
T ss_pred --hHHHHHHHHHHHHhccccCCC
Confidence 355689999999998887654
No 39
>PRK04195 replication factor C large subunit; Provisional
Probab=98.58 E-value=2.8e-06 Score=95.45 Aligned_cols=213 Identities=18% Similarity=0.198 Sum_probs=121.6
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcC--CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLEL--GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
|.....++|.+..++.|.+|+..-. ...+.+.|+|++|+||||+|..+++.+. ++. +-+. .+. .......
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd-~r~~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASD-QRTADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----ccc-cccHHHH
Confidence 3445669999999999999986422 2267899999999999999999999863 221 1121 111 1111222
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch--------hHhhhhcCCCCCCCEEEEEeCChh-hh--
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS--------KSFAVCLDLFSPGSRIIITTRDKR-LL-- 528 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~--------~~l~~~~~~~~~gs~IIiTTR~~~-v~-- 528 (731)
..++....... .....++-+||||+++... ..+...+. ..+..||+|+.+.. ..
T Consensus 82 ~~~i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 82 ERVAGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 22222211100 0011357799999997753 12222222 23445666664331 11
Q ss_pred hhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcC-C---CHHHHHHHHHH
Q 004772 529 YKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQ-K---SKEQWKDKLHK 604 (731)
Q Consensus 529 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~-~---~~~~w~~~l~~ 604 (731)
........+.+.+++.++....+...+..... ....+....|++.++|..-.+......+.. . +.+.....
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi--~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~--- 221 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGI--ECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL--- 221 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh---
Confidence 11123467899999999999998877643222 223567889999999987766554444433 2 12222222
Q ss_pred hcCCCCccHHHHHHHcHh
Q 004772 605 LKLITDPNIYKVLKISYD 622 (731)
Q Consensus 605 l~~~~~~~i~~~l~~s~~ 622 (731)
.......++..++..-+.
T Consensus 222 ~~~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 222 GRRDREESIFDALDAVFK 239 (482)
T ss_pred hcCCCCCCHHHHHHHHHC
Confidence 113334456666665554
No 40
>PRK08727 hypothetical protein; Validated
Probab=98.58 E-value=1.7e-06 Score=87.58 Aligned_cols=170 Identities=11% Similarity=0.121 Sum_probs=100.8
Q ss_pred CCCcccchhh-HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHH
Q 004772 385 LSGFVGLNSR-IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVI 463 (731)
Q Consensus 385 ~~~fvGR~~e-l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 463 (731)
.++|++.... +..+..+.. + .....+.|+|.+|+|||+|+.++++........+.|+.. ......+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~----------~~~~~~~- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL----------QAAAGRL- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH----------HHhhhhH-
Confidence 3556655543 333333322 2 123468999999999999999999887665555566641 1111010
Q ss_pred HhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------hHhhhhcCC-CCCCCEEEEEeCCh---------hh
Q 004772 464 SQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------KSFAVCLDL-FSPGSRIIITTRDK---------RL 527 (731)
Q Consensus 464 ~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------~~l~~~~~~-~~~gs~IIiTTR~~---------~v 527 (731)
...+ +.+ .+.-+|||||++... ..+...... ...+..+|+|++.. ++
T Consensus 85 ---------------~~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 85 ---------------RDAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred ---------------HHHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 0111 111 223589999997543 112222221 23466799999853 22
Q ss_pred hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 528 LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 528 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
...+.....+++++++.++-.+++.+++.... ..-.++....|++.++|-.-.+..+
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 23333456889999999999999998774322 2334567778888888766655443
No 41
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=3.7e-06 Score=94.02 Aligned_cols=189 Identities=14% Similarity=0.085 Sum_probs=109.8
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc--cCcceEEEeecccccccccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG--DFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
|....+++|.+..++.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.+...
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc------------ 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC------------ 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh------------
Confidence 3444668999999999998886543 2456789999999999999999987642 222233332100
Q ss_pred HHHHHhhhcCCc--ccCCCCcHH---HHHHHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh
Q 004772 460 DEVISQVMGENI--KIGTPTITP---NIKKRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 460 ~~ll~~l~~~~~--~~~~~~~~~---~l~~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
..+......... +.......+ .+...+ .+++-++|||+++... ..+...+...++...+|+++...
T Consensus 77 ~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~ 156 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156 (504)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCCh
Confidence 000000000000 000001111 122222 2345689999998765 23333333334455656555433
Q ss_pred -hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 526 -RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 526 -~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
.+... ......+++.+++.++..+.+.+.+-... .....+.+..|++.++|.+--+..
T Consensus 157 ~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~eg--i~i~~~Al~~ia~~s~GdlR~aln 216 (504)
T PRK14963 157 EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEG--REAEPEALQLVARLADGAMRDAES 216 (504)
T ss_pred hhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33222 12345789999999999999988774322 122456788899999999865543
No 42
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.56 E-value=2.9e-06 Score=84.82 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=105.0
Q ss_pred CCc-ccchhh-HHHHHHhhhhcCC-CeEEEEEEccCCchhhHHHHHHHHHhcccCc--ceEEEeecccccccccHHHHHH
Q 004772 386 SGF-VGLNSR-IEKIKSLLCLELG-DVRIVGIWGMGGIGKTTIASVIFHQISGDFQ--GKCFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 386 ~~f-vGR~~e-l~~L~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~ 460 (731)
++| +|-..+ .-.....+..+.+ ....+.|+|..|.|||.|..++++.+....+ .+.++. ...+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHH
Confidence 345 465333 2333333433332 2456789999999999999999998766543 234443 223333
Q ss_pred HHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh--------
Q 004772 461 EVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK-------- 525 (731)
Q Consensus 461 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~-------- 525 (731)
.+...+.. .....++..+++ -=+|+|||++... +.+...+. ....|.++|+|++..
T Consensus 78 ~~~~~~~~--------~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 78 EFADALRD--------GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHHT--------TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHHc--------ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 33333222 123345555553 3478899997754 12222222 224577899999643
Q ss_pred -hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 526 -RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 526 -~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
++...+.....+++++++.++-.+++.+.+.... ..-.++++.-+++.+.+..-.|..+-..|
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~--~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG--IELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 2333444567899999999999999999884322 22455677788888877777666655443
No 43
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.2e-05 Score=82.08 Aligned_cols=281 Identities=13% Similarity=0.170 Sum_probs=162.9
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhc--CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcc--eEEEeecccccccccHH
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCLE--LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQG--KCFMKNVGEESSKMGVI 456 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~ 456 (731)
+...+..+.+|+.+++++...|..- .+.+.-+.|+|.+|.|||+.++.++.++...... .++++ +..-....
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHH
Confidence 3445566999999999999988642 2224448899999999999999999988766432 46665 33445566
Q ss_pred HHHHHHHHhhhcCC-cccCCCCcHHHHHHHHc--CCCcEEEEeccCCchh----HhhhhcCCCCC-CCE--EEEEeCChh
Q 004772 457 HVRDEVISQVMGEN-IKIGTPTITPNIKKRLQ--QRKVLIVLHDVDDNSK----SFAVCLDLFSP-GSR--IIITTRDKR 526 (731)
Q Consensus 457 ~l~~~ll~~l~~~~-~~~~~~~~~~~l~~~L~--~k~~LLVLDdv~~~~~----~l~~~~~~~~~-gs~--IIiTTR~~~ 526 (731)
.++..++..++..+ ......+....+.+.+. ++.+++|||+++...+ .+-.++.+... .++ +|..+-+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 77777777765222 22233335566666665 4688999999977652 22223332222 333 333333322
Q ss_pred --------hhhhcCCceEEEcCCCCHHHHHHHHHHhh---hcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH--HhcC
Q 004772 527 --------LLYKRGVQSVCEVKGLKHNSALELFCRKA---FRQNNRSPDLLELSEEVAHYANG-NPLALQVLGS--SLYQ 592 (731)
Q Consensus 527 --------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~---~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~~--~L~~ 592 (731)
+....+..+ +..+|-+.+|-.+++..++ |......+...+++..++...+| -=.||..+-. .++.
T Consensus 168 ~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 168 FLDYLDPRVKSSLGPSE-IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHhhhhhhhccCcce-eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 222233333 6889999999999999887 33334444555555555555554 3445544322 2222
Q ss_pred C------CHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHcccccCCcChhHH----HhhhcCc----chHH
Q 004772 593 K------SKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFKGEDVDFV----TRVQDDP----TSMR 658 (731)
Q Consensus 593 ~------~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~~~~~~~l----~~~~~~~----~~~~ 658 (731)
+ +.+.-..+.... =...+...+..|+.+.+-.+..++....+.....+ ..+.... ....
T Consensus 247 ~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~ 319 (366)
T COG1474 247 REGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFS 319 (366)
T ss_pred hhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHH
Confidence 1 111111111111 12234455788998888777666555333333222 1111111 1455
Q ss_pred HHHHHHHHCcCceee
Q 004772 659 NGLNILVEKSLITIS 673 (731)
Q Consensus 659 ~~l~~L~~~sLi~~~ 673 (731)
..+..|...|++...
T Consensus 320 ~ii~~L~~lgiv~~~ 334 (366)
T COG1474 320 DIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHhcCeEEee
Confidence 778888888998865
No 44
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.8e-06 Score=99.69 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=111.6
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-C-c-ceEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-F-Q-GKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~-~~~~~~~~~~~~~~~~~~~l 458 (731)
|.....+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-.. . . .-|..+ ..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C------------~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC------------SS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc------------hH
Confidence 3445679999999999999886432 24566899999999999999999876432 1 0 001100 00
Q ss_pred HHHHHHhhhcCCc--ccCCCCcHHHHHHH--------HcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC
Q 004772 459 RDEVISQVMGENI--KIGTPTITPNIKKR--------LQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 459 ~~~ll~~l~~~~~--~~~~~~~~~~l~~~--------L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~ 524 (731)
...+......... +.......+.++.. ..++.-++|||+++.+. ..+...+.-.+...++|++|.+
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 0000000000000 00000011111111 13566799999998876 4444445545566776666554
Q ss_pred h-hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 525 K-RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 525 ~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
. .+... ......|++.+|+.++....+.+.+-.. ......+.+..|++.++|.|--+..+
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE--QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 33322 2223689999999999999998876322 12334567788999999988644443
No 45
>PF14516 AAA_35: AAA-like domain
Probab=98.52 E-value=1.8e-05 Score=84.46 Aligned_cols=279 Identities=14% Similarity=0.139 Sum_probs=150.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccc--cccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESS--KMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~ 459 (731)
+.+.+..|+|...-+++.+.|... ...+.|.|+-.+|||+|...+.+.....--.+++++ ...... .......+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHH
Confidence 445566889996666666666431 348899999999999999999988765433344443 222211 22344344
Q ss_pred HHH----HHhhhcCCc-------ccCCC-CcHHHHHHHH-c--CCCcEEEEeccCCch-------hHhhhhcCCCCC---
Q 004772 460 DEV----ISQVMGENI-------KIGTP-TITPNIKKRL-Q--QRKVLIVLHDVDDNS-------KSFAVCLDLFSP--- 514 (731)
Q Consensus 460 ~~l----l~~l~~~~~-------~~~~~-~~~~~l~~~L-~--~k~~LLVLDdv~~~~-------~~l~~~~~~~~~--- 514 (731)
+.+ ..+++.... ..... .....+.+.+ . +++++|+||+++... +.+..+..|...
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 333 333332110 01111 1333344432 2 579999999997654 122222222111
Q ss_pred -----CCEEEE-EeCChhhhh-----hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 004772 515 -----GSRIII-TTRDKRLLY-----KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLAL 583 (731)
Q Consensus 515 -----gs~IIi-TTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal 583 (731)
..++++ .+....... -......+.|++++.+|...|+.++-.. ......+.|...+||+|..+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHH
Confidence 112222 221111111 1123457899999999999998776421 12233889999999999999
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHhcCCCCccHHHHHHHcHhCC--CHHHHHHHHHcccccCCcChhHHHhhhcCcchHHH
Q 004772 584 QVLGSSLYQK--SKEQWKDKLHKLKLITDPNIYKVLKISYDGL--NWEEKEIFLDVACFFKGEDVDFVTRVQDDPTSMRN 659 (731)
Q Consensus 584 ~~~~~~L~~~--~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L--~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~ 659 (731)
..++..+... +.++......... .....-|+.-.+.| .++.+.++..+-.-..... ....
T Consensus 237 ~~~~~~l~~~~~~~~~l~~~a~~~~----~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~~~------------~~~~ 300 (331)
T PF14516_consen 237 QKACYLLVEEQITLEQLLEEAITDN----GIYNDHLDRLLDRLQQNPELLEAYQQILFSGEPVD------------LDSD 300 (331)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHhc----ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCCcc------------cChH
Confidence 9999988653 2222211111111 11122333333333 3344555543322111111 1124
Q ss_pred HHHHHHHCcCceeeCCeEEeh-HHHHHH
Q 004772 660 GLNILVEKSLITISDNRLQMH-DMLQEI 686 (731)
Q Consensus 660 ~l~~L~~~sLi~~~~~~~~mH-dlvr~~ 686 (731)
....|...|||...++.+..+ +|-|.+
T Consensus 301 ~~~~L~~~GLV~~~~~~~~~~n~iY~~y 328 (331)
T PF14516_consen 301 DIYKLESLGLVKRDGNQLEVRNPIYRQY 328 (331)
T ss_pred HHHHHHHCCeEEEeCCEEEEEcHHHHHH
Confidence 467899999999998877654 344433
No 46
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.52 E-value=2.1e-06 Score=86.89 Aligned_cols=152 Identities=11% Similarity=0.172 Sum_probs=94.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
.+.+.|+|++|+|||+|+..+++........+.|+.. ... .... ..+.+.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~----~~~---~~~~--------------------~~~~~~~~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL----DKR---AWFV--------------------PEVLEGMEQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH----HHH---hhhh--------------------HHHHHHhhh
Confidence 4578899999999999999999876655444555541 100 0000 011111111
Q ss_pred CCcEEEEeccCCch------hHhhhhcC-CCCCC-CEEEEEeCCh---------hhhhhcCCceEEEcCCCCHHHHHHHH
Q 004772 489 RKVLIVLHDVDDNS------KSFAVCLD-LFSPG-SRIIITTRDK---------RLLYKRGVQSVCEVKGLKHNSALELF 551 (731)
Q Consensus 489 k~~LLVLDdv~~~~------~~l~~~~~-~~~~g-s~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~ 551 (731)
--+|+|||++... ..+...+. ....| .++|+||+.. ++...+....++++++++.++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 2489999996642 11222222 12233 4799999854 33344455678999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 552 CRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
.+++... ...-.++...-|++.+.|..-.+..+-..+
T Consensus 177 ~~~a~~~--~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 177 QLRARLR--GFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 8766322 123446778888999888877776655443
No 47
>PRK05642 DNA replication initiation factor; Validated
Probab=98.52 E-value=3e-06 Score=85.66 Aligned_cols=152 Identities=18% Similarity=0.275 Sum_probs=94.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
.+.+.|+|..|+|||.|+..+++.+...-..++|+.. ..+... ...+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~----------~~~~~~-----------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL----------AELLDR-----------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH----------HHHHhh-----------------hHHHHHhhhh
Confidence 3578899999999999999999877655455666651 111100 0122333333
Q ss_pred CCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh---------hhhhhcCCceEEEcCCCCHHHHHHHHH
Q 004772 489 RKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK---------RLLYKRGVQSVCEVKGLKHNSALELFC 552 (731)
Q Consensus 489 k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~ 552 (731)
-. +||+||++... ..+...++ ....|..+|+|++.. ++...+....++++.+++.++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 33 68899996432 22222222 224577899988743 222233344678999999999999998
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 553 RKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
.++.... ..-.+++...+++.+.|..-.+..+-..|
T Consensus 177 ~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6663321 22335777888888888877766655544
No 48
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=7.6e-06 Score=91.73 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=110.9
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcc-eEEEeecccccccccHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQG-KCFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~ 460 (731)
|....++||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-..-.. .--+ .....+......
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC~ 85 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRACT 85 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHHH
Confidence 3445678999999999999986443 24567899999999999999999876421000 0000 000000111111
Q ss_pred HHHHhhhcCCcccC--CCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-
Q 004772 461 EVISQVMGENIKIG--TPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK- 525 (731)
Q Consensus 461 ~ll~~l~~~~~~~~--~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~- 525 (731)
.+...-.......+ .....+.+++.+ .++.-++|||+++.+. ..+...+.....++.+|++|.+.
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11110000000000 011222222222 2455699999998876 34444444445566766655543
Q ss_pred hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 526 RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 526 ~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.+... ......+.+..++.++..+.+.+.+.... .....+....|++.++|.|.-...+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33322 11235789999999999999887763221 1223455678899999998654443
No 49
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=1.1e-05 Score=85.60 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=101.0
Q ss_pred CCCCCCCCcccchhhHHHHHHhhhhc-CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 380 SDSTDLSGFVGLNSRIEKIKSLLCLE-LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 380 ~~~~~~~~fvGR~~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
..|.+...|+||+.++.+|...|... .+.++++.|+|++|+|||||++.+..... ...++.+. .+..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp------rg~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV------RGTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC------CCHHHH
Confidence 45677889999999999999999643 23467999999999999999999987654 22444322 156788
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHH-----c-CCCcEEEEe--ccCCchhHhhhh--cCCCCCCCEEEEEeCChhhh
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRL-----Q-QRKVLIVLH--DVDDNSKSFAVC--LDLFSPGSRIIITTRDKRLL 528 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~-~k~~LLVLD--dv~~~~~~l~~~--~~~~~~gs~IIiTTR~~~v~ 528 (731)
+..++..++... .....++...+.+.+ . +++.+||+- +-.+........ +..-..-|+|++----+.+-
T Consensus 326 Lr~LL~ALGV~p-~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPN-VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCC-cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 888998888632 111122334433332 2 556666654 222222111111 11112346777654332211
Q ss_pred h---hcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 529 Y---KRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 529 ~---~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
. .+.....|-+++++.++|.++-.+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1 12233578899999999998876655
No 50
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.48 E-value=2.3e-07 Score=90.31 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=35.6
Q ss_pred CcccchhhHHHHHHhhh-hcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 387 GFVGLNSRIEKIKSLLC-LELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.|+||+.++++|...|. ......+.+.|+|++|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999995 233457899999999999999999999887766
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=4.3e-06 Score=94.77 Aligned_cols=194 Identities=14% Similarity=0.120 Sum_probs=110.6
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-..-. .. ....+.......
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~----~~-----~~pCg~C~sCr~ 81 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENA----QH-----GEPCGVCQSCTQ 81 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCC----CC-----CCCCcccHHHHH
Confidence 3445679999999999999987442 2567889999999999999999886532110 00 000000000001
Q ss_pred HHHhhhcC--CcccCCCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-h
Q 004772 462 VISQVMGE--NIKIGTPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-R 526 (731)
Q Consensus 462 ll~~l~~~--~~~~~~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~ 526 (731)
+...-... ..+.......+.+++.+ .+++-++|||+++... ..+...+......+++|++|.+. .
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 10000000 00000011222222222 2455699999998766 23344444344566777776544 2
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLG 587 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 587 (731)
+... ......+.+.+++.++....+.+.+-... .....+....|++.++|.+.-+..+.
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2211 12234678899999999999988774322 22345677899999999986555443
No 52
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=4e-06 Score=89.54 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=113.6
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc----CcceEEEeecccccccccHH
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD----FQGKCFMKNVGEESSKMGVI 456 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 456 (731)
.|.....++|.+...+.|...+..+. -+..+.|+|+.|+||||||..+++.+-.. +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 34566779999999999999886443 25578899999999999999999876442 1111000 000011
Q ss_pred HHHHHHHHh-------hhcC-Ccc---cCCCCcHHH---HHHHHc-----CCCcEEEEeccCCch----hHhhhhcCCCC
Q 004772 457 HVRDEVISQ-------VMGE-NIK---IGTPTITPN---IKKRLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFS 513 (731)
Q Consensus 457 ~l~~~ll~~-------l~~~-~~~---~~~~~~~~~---l~~~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~ 513 (731)
...+.+... +... +.. ....-..+. +.+.+. ++.-++|+|+++... ..+...+...+
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 112222111 0000 000 001112222 333332 456699999998876 34444444444
Q ss_pred CCCEEEEEeCCh-hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 004772 514 PGSRIIITTRDK-RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLG 587 (731)
Q Consensus 514 ~gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 587 (731)
.+..+|++|... .++.. ......+.+.+++.++..+++.+.... .. ...+.+..+++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~---~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS---QG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc---cC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555555555433 33222 122358899999999999999874311 11 224557789999999998665443
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.1e-05 Score=89.36 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=106.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+...-. -.. .+.........
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~--~~~-------~pc~~c~~c~~ 79 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENR--KGV-------EPCNECRACRS 79 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccC--CCC-------CCCcccHHHHH
Confidence 4455679999998888888775442 2356789999999999999999987532100 000 00000000000
Q ss_pred HHHhhhcCC--cccCCCCcHHH---HHHH-----HcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-h
Q 004772 462 VISQVMGEN--IKIGTPTITPN---IKKR-----LQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-R 526 (731)
Q Consensus 462 ll~~l~~~~--~~~~~~~~~~~---l~~~-----L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~ 526 (731)
+........ .+.......+. +.+. ..+++-++|+|+++... +.+...+...++...+|++|.+. .
T Consensus 80 i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~k 159 (472)
T PRK14962 80 IDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK 159 (472)
T ss_pred HhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHh
Confidence 000000000 00000001111 1111 12356699999998765 23333333333444554444442 2
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-hHHHHHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGN-PLALQVLGSS 589 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~~~~ 589 (731)
+... ......+++.+++.++....+.+.+.... ..-..+....|++.++|. +.++..+-..
T Consensus 160 l~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 160 VPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred hhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3222 22346789999999999999888773322 123356677888877654 6676666543
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.43 E-value=2.6e-06 Score=98.90 Aligned_cols=178 Identities=20% Similarity=0.277 Sum_probs=102.8
Q ss_pred CCCCCCcccchhhHH---HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIE---KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~---~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
|...++|+|.+..+. .|.+.+..+ ....+.|+|++|+||||||+.+++.....|. .+.. . ..+...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~~~i~d- 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--LAGVKD- 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--hhhhHH-
Confidence 344567899998885 455665433 3556789999999999999999987765541 1110 0 001111
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHH--cCCCcEEEEeccCCchhH-hhhhcCCCCCCCEEEE--EeCChh--hhhh-
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRL--QQRKVLIVLHDVDDNSKS-FAVCLDLFSPGSRIII--TTRDKR--LLYK- 530 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~k~~LLVLDdv~~~~~~-l~~~~~~~~~gs~IIi--TTR~~~--v~~~- 530 (731)
.+..+ ......+ .+++.+|+|||++..... ...+++....+..++| ||.+.. +...
T Consensus 93 ir~~i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 93 LRAEV----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred HHHHH----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHh
Confidence 01111 1111111 245779999999876522 2223333445555555 344431 1111
Q ss_pred cCCceEEEcCCCCHHHHHHHHHHhhhc-----CCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 531 RGVQSVCEVKGLKHNSALELFCRKAFR-----QNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 531 ~~~~~~~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
......+.+++|+.++...++.+.+-. +.....-.++....|++.+.|..-.+..+
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 112357899999999999999876631 01122334567788899999876544443
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=7.6e-06 Score=86.81 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=107.3
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-----C-cceEEEeecccccccccHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-----F-QGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
.+++|.+...+.|.+.+..+. -.+...++|+.|+||||+|..++..+-.. + +...|.. . ......... .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHH-H
Confidence 357899999999999886432 35677899999999999999999875321 1 2222211 0 011111111 1
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChhhh-hh-cCC
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKRLL-YK-RGV 533 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~~ 533 (731)
+.+...+.... ..+++-++|+|+++... ..+...+.-.++++.+|++|.+...+ .. ...
T Consensus 79 r~~~~~~~~~p---------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 79 RNIIEEVNKKP---------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHHHhcCc---------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 22221111100 11345578888886654 45555666667788888888765432 21 223
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 534 QSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 534 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
...+.+.+++.++....+.+... ....+.+..++.+++|.|.-+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN------DIKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 46889999999999888876541 11234467889999999875543
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.42 E-value=1.5e-06 Score=88.68 Aligned_cols=178 Identities=20% Similarity=0.266 Sum_probs=102.9
Q ss_pred CCCCCCcccchhhHHHHHHhhhh--cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCL--ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
|....++||.+..+.+ ..+|.. ..+..+.+.+||++|+||||||+.++..-+.+- ..|+......+....+
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dv---- 206 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDV---- 206 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHH----
Confidence 3334556776665544 222221 244577888999999999999999987655431 3455422111211222
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchhHhh-hhcCCCCCCCEEEE--EeCChhhh---hhcCC
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKSFA-VCLDLFSPGSRIII--TTRDKRLL---YKRGV 533 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l~-~~~~~~~~gs~IIi--TTR~~~v~---~~~~~ 533 (731)
+.++.+.. -...+..++.+|.+|.|+.....-. .+++....|.-++| ||-|+... .....
T Consensus 207 R~ife~aq--------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 207 RDIFEQAQ--------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred HHHHHHHH--------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhc
Confidence 22222211 1123457899999999988774333 34455567776665 77776321 11223
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhh---cCCC---C-Ch----hHHHHHHHHHHHhCCCh
Q 004772 534 QSVCEVKGLKHNSALELFCRKAF---RQNN---R-SP----DLLELSEEVAHYANGNP 580 (731)
Q Consensus 534 ~~~~~l~~L~~~ea~~L~~~~~~---~~~~---~-~~----~~~~~~~~i~~~~~GlP 580 (731)
..++.|++|+.++...++.+... .... + +. ....+.+-++..|.|-.
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 46789999999999999987431 1111 1 11 23445566666677654
No 57
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.41 E-value=1.3e-05 Score=86.85 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=110.2
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc----Cc-----------------ce
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD----FQ-----------------GK 440 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~ 440 (731)
|.....++|.+..++.|.+++..+. -.+.+.++|++|+|||++|+.++..+... +. ..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3445678999999999999886432 24577899999999999999999876422 10 00
Q ss_pred EEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCC
Q 004772 441 CFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGS 516 (731)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs 516 (731)
.++.. ..... ....+.++..+... -..+++-++|+|+++... ..+...+...++.+
T Consensus 89 ~~~~~----~~~~~-~~~~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 89 IEIDA----ASNNG-VDDIREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred EEeec----cccCC-HHHHHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 11110 00000 00011111111000 011345589999997764 33444444445566
Q ss_pred EEEEEeCChh-hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 517 RIIITTRDKR-LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 517 ~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
.+|++|.+.. +... ......+++.+++.++..+++...+-.... ....+.+..+++.++|.|..+.....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 7777765543 2222 123357889999999999999887633221 22346788899999999977766544
No 58
>PRK09087 hypothetical protein; Validated
Probab=98.41 E-value=4.9e-06 Score=83.48 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=90.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
.+.+.|+|++|+|||+|++.++.... ..++.. ..+...++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~--------------------~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAAN--------------------AAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHH--------------------hhhc
Confidence 45689999999999999998887642 224430 011111111 1111
Q ss_pred CCcEEEEeccCCch---hHhhhhcC-CCCCCCEEEEEeCC---------hhhhhhcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 489 RKVLIVLHDVDDNS---KSFAVCLD-LFSPGSRIIITTRD---------KRLLYKRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 489 k~~LLVLDdv~~~~---~~l~~~~~-~~~~gs~IIiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
-+|++||++... ..+...++ ....|..+|+|++. +++...+....++++++++.++-.+++.+.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278899996542 22222222 23457789999873 2344445566789999999999999999887
Q ss_pred hcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 556 FRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 556 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
-.. ...-.+++..-|++.+.|..-++..+...|
T Consensus 167 ~~~--~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADR--QLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHc--CCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 332 223446778888888888888777654444
No 59
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.6e-05 Score=87.95 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=111.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....++||.+..++.|.+.+..+. -++.+.++|+.|+||||+|+.++..+-..... ...+-+.......
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~---------~~~pCg~C~~C~~ 78 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGP---------TSDPCGTCHNCIS 78 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCC---------CCCCccccHHHHH
Confidence 3445678999999999988886443 24578899999999999999998764221100 0000111111111
Q ss_pred HHHhhhcCCcccCC--CCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-hh
Q 004772 462 VISQVMGENIKIGT--PTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD-KR 526 (731)
Q Consensus 462 ll~~l~~~~~~~~~--~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~-~~ 526 (731)
+...........+. ....+.++..+ .++.-++|+|+++... +.+...+...++.+.+|++|.+ ..
T Consensus 79 i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 79 IKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred HhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 11110000000110 11222222221 2345589999998765 3455555555567777766643 33
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
+... ......+++.+++.++..+.+.+.+.... .....+....|++.++|.+..+..
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3222 22346789999999999999988774322 223456678899999998864433
No 60
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=9.7e-06 Score=87.79 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=105.9
Q ss_pred CCcccchhhHHHHHHhhhhcCC--------CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELG--------DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIH 457 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 457 (731)
.+++|.+..++.|.+.+..+.+ -++.+.++|++|+|||++|..++..+-..... . . +-+...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~-------~Cg~C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-P-------GCGECR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-C-------CCCCCH
Confidence 4588999999999999875431 25678899999999999999999875332110 0 0 000000
Q ss_pred HHHHHHHhhhcCC--cccC-CCCcHHH---HHHHHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEe
Q 004772 458 VRDEVISQVMGEN--IKIG-TPTITPN---IKKRLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITT 522 (731)
Q Consensus 458 l~~~ll~~l~~~~--~~~~-~~~~~~~---l~~~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTT 522 (731)
....+........ ...+ .....+. +.+.+. +++-++|+|+++... ..+...+...+++..+|++|
T Consensus 75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 75 ACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 0111110000000 0000 0001122 222221 344588899998876 33444445555677777766
Q ss_pred CCh-hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 523 RDK-RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 523 R~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.+. .+... ......+.+.+++.++..+.+.+.. . ...+.+..++..++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~----~---~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD----G---VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 654 33322 2234688999999999998887543 1 12355778899999999755443
No 61
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=5.3e-07 Score=82.40 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=70.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc-----CcceEEEeecccccccccHHHHHHHHHHhhhcCCcc-cCCCCcHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD-----FQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIK-IGTPTITPNI 482 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~l 482 (731)
.+.+.|+|++|+|||+++..++...... -...+|+. .........+...++..++..... .....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4688999999999999999999876543 23445665 333346778888888887765544 2222355677
Q ss_pred HHHHcCCCc-EEEEeccCCc-h----hHhhhhcCCCCCCCEEEEEeCC
Q 004772 483 KKRLQQRKV-LIVLHDVDDN-S----KSFAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 483 ~~~L~~k~~-LLVLDdv~~~-~----~~l~~~~~~~~~gs~IIiTTR~ 524 (731)
.+.+...+. +||||+++.. . +.+..+.. ..+..+|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777776655 9999999887 4 22322223 566777777664
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9.6e-06 Score=90.91 Aligned_cols=181 Identities=17% Similarity=0.152 Sum_probs=107.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCc---------------------ce
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ---------------------GK 440 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~ 440 (731)
|....+++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+..... ..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 3445678999999999999886432 2456789999999999999999986542110 00
Q ss_pred EEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHH-HHcCCCcEEEEeccCCch----hHhhhhcCCCCCC
Q 004772 441 CFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKK-RLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPG 515 (731)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~-~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~g 515 (731)
..+. .....+... .+.++ +.+.. -..+++-++|+|+++... +.+...+...++.
T Consensus 91 ieid----aas~~gvd~-ir~ii----------------~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID----AASRTGVEE-TKEIL----------------DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee----cccccCHHH-HHHHH----------------HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1110 000000000 01111 11110 112456699999998766 3444455544556
Q ss_pred CEEEEEeCCh-hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHH
Q 004772 516 SRIIITTRDK-RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-ALQVL 586 (731)
Q Consensus 516 s~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 586 (731)
+.+|++|-+. .+... ......+++.+++.++....+.+.+-... .....+....|++.++|.+. |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666555433 33322 22346889999999999888887653221 22345567788999999775 44433
No 63
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=7.6e-06 Score=90.61 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=102.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC--cceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF--QGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRL 486 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 486 (731)
...+.|+|..|+|||+|+.++++.+.... ..++++. ...+...+...+.... .....+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh------hHHHHHHHHh
Confidence 35688999999999999999998765432 2334443 1233333333322110 1223344444
Q ss_pred cCCCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh---------hhhhhcCCceEEEcCCCCHHHHHHH
Q 004772 487 QQRKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK---------RLLYKRGVQSVCEVKGLKHNSALEL 550 (731)
Q Consensus 487 ~~k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 550 (731)
+ ..-+|||||++... +.+...+. ....+..||+|+... .+...+....++.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 34488899996543 22222222 224566788887633 2223334456788999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 551 FCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
+.+.+-.......-.++....|++.++|.|-.+..+...+
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9988743221113456788999999999999888776544
No 64
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.5e-05 Score=90.55 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=111.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-..-... .. +....+-+.......
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~--~~--~~~~~pCg~C~~C~~ 86 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG--QG--GITATPCGVCQACRD 86 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc--cc--CCCCCCCCccHHHHH
Confidence 3445679999999999999886543 356778999999999999999988753210000 00 000001111111112
Q ss_pred HHHhhhcCCcccCC--CCcHHHHHHHHc--------CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-hh
Q 004772 462 VISQVMGENIKIGT--PTITPNIKKRLQ--------QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD-KR 526 (731)
Q Consensus 462 ll~~l~~~~~~~~~--~~~~~~l~~~L~--------~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~-~~ 526 (731)
+...-.......+. ....+.+++.+. ++.-++|||+++... ..+...+...+....+|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 21100000000111 112333333332 234589999998876 3344444444456666665544 33
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
+... ......+++.+|+.++..+.+.+.+.... .....+....|++.++|.+.-+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg--i~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN--VPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 22346889999999999999987763322 1223456788899999987655444
No 65
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.5e-05 Score=89.40 Aligned_cols=194 Identities=14% Similarity=0.073 Sum_probs=109.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-..-.. . ..+-+.......
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~----~-----~~pCg~C~~C~~ 81 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGV----S-----ANPCNDCENCRE 81 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCC----C-----cccCCCCHHHHH
Confidence 3445678999999999999996442 24567899999999999999999875321000 0 000000001111
Q ss_pred HHHhhhcCCcccC--CCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-h
Q 004772 462 VISQVMGENIKIG--TPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-R 526 (731)
Q Consensus 462 ll~~l~~~~~~~~--~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~ 526 (731)
+...-.......+ .....+.+++.+ .++.-++|+|+++... ..+...+...++.+++|++|-+. .
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 1100000000000 011222222222 2345589999998876 34445555555677777665443 2
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLG 587 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 587 (731)
+... ......+++.+++.++....+.+.+-... .....+....|++.++|.+.-+..+.
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN--VEFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 2221 12235678999999998887776653222 12234567788999999886554433
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=1.9e-05 Score=88.04 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=109.2
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCc--c-----eEEEeeccccccccc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ--G-----KCFMKNVGEESSKMG 454 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-----~~~~~~~~~~~~~~~ 454 (731)
|....+++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-.... . .|..+
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C---------- 85 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC---------- 85 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----------
Confidence 4445678999999999988775442 2467889999999999999999987632110 0 01100
Q ss_pred HHHHHHHHHHhhhcCCccc--CCCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEE
Q 004772 455 VIHVRDEVISQVMGENIKI--GTPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIII 520 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~--~~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIi 520 (731)
.....+........... ......+.++..+ .+++-++|+|+++... ..+...+...++.+.+|+
T Consensus 86 --~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 86 --TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred --hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 00011110000000000 0011222222221 2456689999998865 334444444455666554
Q ss_pred -EeCChhhhhhc-CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 521 -TTRDKRLLYKR-GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 521 -TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
||+...+.... .....+++.+++.++....+.+.+-... .....+....|++.++|.+.-+..
T Consensus 164 aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--i~ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 164 ATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--LKTDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred EeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 44444443322 2335789999999999999988874322 222345677899999998755433
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=8.2e-06 Score=92.87 Aligned_cols=193 Identities=16% Similarity=0.123 Sum_probs=111.4
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... . ...+.+.......
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~-----~~~pCg~C~~C~~ 81 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----I-----TATPCGECDNCRE 81 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----C-----CCCCCCCCHHHHH
Confidence 3445679999999999999886443 2455789999999999999999986533210 0 0000111111112
Q ss_pred HHHhhhcCCc--ccCCCCcHHHHHHH--------HcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-h
Q 004772 462 VISQVMGENI--KIGTPTITPNIKKR--------LQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-R 526 (731)
Q Consensus 462 ll~~l~~~~~--~~~~~~~~~~l~~~--------L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~ 526 (731)
+...-..... +.......+.+++. ..++.-++|||+++... ..+...+.-.++..++|++|.+. .
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 2111000000 00000112222221 23456699999998876 44444455455566666655544 3
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
+... ......+.+.+|+.++..+.+.+.+-... .....+....|++.++|.+--...+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 22346889999999999999987763221 2223456678999999988744443
No 68
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=8.1e-06 Score=89.20 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=108.4
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCc-c--eEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ-G--KCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~--~~~~~~~~~~~~~~~~~~l 458 (731)
|....+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+-.... . .|..+ ..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~s---- 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TS---- 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cH----
Confidence 3445678999999999999886443 2346789999999999999999987643210 0 01100 00
Q ss_pred HHHHHHhhhcCCcccC--CCCcHHHHH---HH-----HcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC
Q 004772 459 RDEVISQVMGENIKIG--TPTITPNIK---KR-----LQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~--~~~~~~~l~---~~-----L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~ 524 (731)
...+...........+ .....+.++ +. ..++.-++|||+++... ..+...+........+|++|.+
T Consensus 81 C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence 0111111000000000 001111111 11 23456699999998876 3333333333445555555543
Q ss_pred -hhhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 525 -KRLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 525 -~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
..+... ......|.+.+++.++..+.+.+.+-... ..-..+....|++.++|.+.-.-.
T Consensus 161 ~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 161 FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHHHHH
Confidence 333222 22235789999999999998888763222 223456778899999999854433
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.35 E-value=2.9e-06 Score=78.62 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=40.8
Q ss_pred ccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 389 VGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 389 vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.+........++.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 47888899998887543 2457889999999999999999988754333344443
No 70
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.35 E-value=1.7e-05 Score=79.06 Aligned_cols=258 Identities=16% Similarity=0.182 Sum_probs=144.5
Q ss_pred CCCCCCcccchhhHHHHHHhhhhc---CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLE---LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
|....+|+|.++..++|.=.+... ....--+.++|++|.||||||.-+++.+...+. +........+.++.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~gDla-- 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPGDLA-- 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChhhHH--
Confidence 455578999998888887666532 223556889999999999999999998765441 11000000111111
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchhHhhhhc------------CCCCCCCE---------
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKSFAVCL------------DLFSPGSR--------- 517 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l~~~~------------~~~~~gs~--------- 517 (731)
.++.. |+ ..=+|.+|.++.........+ -.-++++|
T Consensus 96 --aiLt~--------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 96 --AILTN--------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred --HHHhc--------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 11111 11 223556677765541111110 01133333
Q ss_pred --EEEEeCChhhhhhc--CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCC
Q 004772 518 --IIITTRDKRLLYKR--GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQK 593 (731)
Q Consensus 518 --IIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~ 593 (731)
|=.|||...+..-+ ...-+.+++-.+.+|-.+++.+.+. ....+..++.+.+|++++.|-|--..-+.+..+.
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~--~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD- 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK--ILGIEIDEEAALEIARRSRGTPRIANRLLRRVRD- 229 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHH--HhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHH-
Confidence 33688854332211 1334668899999999999988872 2223344577899999999999755544443322
Q ss_pred CHHHHHHHHHHhcCCCCc----cHHHHHHHcHhCCCHHHHHHHHHccccc--CCcChhHHHhhhcCcc-hHHHHHH-HHH
Q 004772 594 SKEQWKDKLHKLKLITDP----NIYKVLKISYDGLNWEEKEIFLDVACFF--KGEDVDFVTRVQDDPT-SMRNGLN-ILV 665 (731)
Q Consensus 594 ~~~~w~~~l~~l~~~~~~----~i~~~l~~s~~~L~~~~k~~fl~la~f~--~~~~~~~l~~~~~~~~-~~~~~l~-~L~ 665 (731)
+...... ...+. .....|..-=..|+.-.++.+..+.-.+ ++...+.++..+..+. ..++.++ .|+
T Consensus 230 ----fa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLi 303 (332)
T COG2255 230 ----FAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLI 303 (332)
T ss_pred ----HHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHH
Confidence 1111000 00011 1222333333456666666666555444 5566777777776655 4454444 389
Q ss_pred HCcCceee-CCeE
Q 004772 666 EKSLITIS-DNRL 677 (731)
Q Consensus 666 ~~sLi~~~-~~~~ 677 (731)
+.|+|++. .|+.
T Consensus 304 q~gfi~RTpRGR~ 316 (332)
T COG2255 304 QQGFIQRTPRGRI 316 (332)
T ss_pred HhchhhhCCCcce
Confidence 99999988 4443
No 71
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.1e-05 Score=90.67 Aligned_cols=193 Identities=13% Similarity=0.104 Sum_probs=107.7
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|.....++|++..++.|.+.+..+. -.+.+.++|+.|+||||+|+.++..+...- |... ...+-....+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-----~~Cg~C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-----DCCNSCSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-----CCCcccHHHHH
Confidence 4455678999999999999886442 246788999999999999999998763211 1100 00001111111
Q ss_pred HHHhhhcCCcccCC--CCcHHHHHHH---Hc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-h
Q 004772 462 VISQVMGENIKIGT--PTITPNIKKR---LQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-R 526 (731)
Q Consensus 462 ll~~l~~~~~~~~~--~~~~~~l~~~---L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~ 526 (731)
+...........+. ....+.++.. +. .++-++|+|+++... ..+...+.-.++...+|++|.+. .
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 11110000000000 0112222211 11 233479999998765 33444444444556665555433 3
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-ALQVL 586 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 586 (731)
+... ......+++.+++.++....+...+-... .....+.+..+++.++|.+. |+..+
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i~Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--IKIEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 3222 22345789999999999999888763322 12234567889999999765 44433
No 72
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2e-05 Score=86.37 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=110.1
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc--CcceEEEeecccccccccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD--FQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
|....+++|.+...+.|..++..+. -...+.++|+.|+||||+|..+++.+... +....|.... ..+-+.....
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHH
Confidence 3445678999999999999886442 24557899999999999999999876431 1111111000 0000111111
Q ss_pred HHHHHhhhcCCcccC--CCCcHHHH---HHHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEe-CC
Q 004772 460 DEVISQVMGENIKIG--TPTITPNI---KKRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITT-RD 524 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~--~~~~~~~l---~~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTT-R~ 524 (731)
+.+...........+ .....+.+ .+.+ .+.+-++|+|+++... +.+...+...++.+.+|++| +.
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 112111000000000 00112222 2223 2345588999998765 33444444445566666555 33
Q ss_pred hhhhhhc-CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 525 KRLLYKR-GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 525 ~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
..+.... .....+++.+++.++..+.+...+-.. ......+.+..+++.++|.+--+...
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3333221 123467899999999998888776321 12234567889999999988654443
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.31 E-value=7.1e-06 Score=88.99 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=98.2
Q ss_pred CCCcccchhhHHHHHHhhhhc-----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccc
Q 004772 385 LSGFVGLNSRIEKIKSLLCLE-----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKM 453 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 453 (731)
..++.|++..+++|.+.+... -..++-+.|+|++|+|||+||+.+++.....| +.. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v----~--- 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRV----V--- 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eec----c---
Confidence 356899999999998876421 12245689999999999999999999876543 110 0
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCC-cHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhc---CCC--
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPT-ITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCL---DLF-- 512 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~---~~~-- 512 (731)
...+....... ... ....+...-...+.+|+||+++... ..+...+ ..+
T Consensus 189 -~~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 -GSELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -hHHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 00111111000 000 1111222223467899999997642 1111121 111
Q ss_pred CCCCEEEEEeCChhh-----hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 004772 513 SPGSRIIITTRDKRL-----LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP 580 (731)
Q Consensus 513 ~~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 580 (731)
..+..||.||..... .........+.++..+.++..++|..++.+...... .....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 235678888875432 211223567899999999999999887743322211 11356667776653
No 74
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.31 E-value=7.3e-05 Score=83.47 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=97.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcc--eEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQG--KCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRL 486 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 486 (731)
...+.|+|++|+|||+|+.++++.+...+.. +.++. ...+...+...+... ....+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN--------TMEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC--------cHHHHHHHH
Confidence 4568899999999999999999988766532 33443 112222222222111 123344444
Q ss_pred cCCCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh---------hhhhhcCCceEEEcCCCCHHHHHHH
Q 004772 487 QQRKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK---------RLLYKRGVQSVCEVKGLKHNSALEL 550 (731)
Q Consensus 487 ~~k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 550 (731)
+ +.-+|+|||++... +.+...+. ....|..+|+|+... .+...+.....+++++++.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 34589999996542 12222221 223455688887643 1223334446789999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 551 FCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
+.+.+-.. ...-.+++...|++.++|..-.|.-+-.
T Consensus 289 l~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 289 LKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 99987432 2233457788899999988876554433
No 75
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=2.8e-05 Score=88.56 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=113.6
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-......- .+......+.......
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~cg~c~~C~~ 94 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDLCGVGEHCQA 94 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCccccCcccHHHHH
Confidence 3445679999999999999886442 2456889999999999999999987643221000 0000000011111122
Q ss_pred HHHhhhcCCcccC--CCCcHHHHHHH---Hc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEe-CChh
Q 004772 462 VISQVMGENIKIG--TPTITPNIKKR---LQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITT-RDKR 526 (731)
Q Consensus 462 ll~~l~~~~~~~~--~~~~~~~l~~~---L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTT-R~~~ 526 (731)
+...........+ .....+.+++. +. .++-++|+|+++... +.+...+...++.+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2211110000000 11122233322 21 345589999998776 34444444455667766555 3333
Q ss_pred hhhhc-CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 004772 527 LLYKR-GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLG 587 (731)
Q Consensus 527 v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 587 (731)
+.... .....+++.+++.++....+.+.+-... .....+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33221 2346789999999999999988763222 22334677889999999987665544
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=2.8e-05 Score=76.01 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=59.3
Q ss_pred CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCC
Q 004772 488 QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNR 561 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 561 (731)
+.+-++|+||++... +.+...+...++.+.+|++|++. .+... ......+++.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 345689999997765 33444555555667777777654 22221 1234688999999999999998761
Q ss_pred ChhHHHHHHHHHHHhCCChH
Q 004772 562 SPDLLELSEEVAHYANGNPL 581 (731)
Q Consensus 562 ~~~~~~~~~~i~~~~~GlPL 581 (731)
...+.+..+++.++|.|.
T Consensus 169 --i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPG 186 (188)
T ss_pred --CCHHHHHHHHHHcCCCcc
Confidence 124668899999999985
No 77
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=2.6e-05 Score=86.23 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=97.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCc--ceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQ--GKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRL 486 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 486 (731)
...+.|+|++|+|||+|+.++++.+...++ .+.|+. ...+...+...+... ....+++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~--------~~~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG--------KLNEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc--------cHHHHHHHH
Confidence 446899999999999999999998766543 234443 122333333332211 122344444
Q ss_pred cCCCcEEEEeccCCch------hHhhhhc-CCCCCCCEEEEEeC-Chh--------hhhhcCCceEEEcCCCCHHHHHHH
Q 004772 487 QQRKVLIVLHDVDDNS------KSFAVCL-DLFSPGSRIIITTR-DKR--------LLYKRGVQSVCEVKGLKHNSALEL 550 (731)
Q Consensus 487 ~~k~~LLVLDdv~~~~------~~l~~~~-~~~~~gs~IIiTTR-~~~--------v~~~~~~~~~~~l~~L~~~ea~~L 550 (731)
..+.-+|+|||++... ..+...+ .....|..||+||. .+. +...+.....+++++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 4456689999997542 1122222 12234567888875 332 122233445789999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 551 FCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
+.+.+-.. ...-.+++...|++.+.|+.-.|.-+-.
T Consensus 272 L~~~~~~~--~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 272 ARKMLEIE--HGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred HHHHHHhc--CCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 98887322 1223457788899988887766655443
No 78
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=4.6e-05 Score=89.76 Aligned_cols=190 Identities=11% Similarity=0.071 Sum_probs=108.7
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
....++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-...... ...-+...-.+.+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~---------~~pCg~C~sC~~~ 81 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT---------STPCGECDSCVAL 81 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC---------CCCCcccHHHHHH
Confidence 344678999999999999987543 245678999999999999999998763211000 0000000001111
Q ss_pred HHh----hhcCCcccCCCCcHHHHHH---H-----HcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-h
Q 004772 463 ISQ----VMGENIKIGTPTITPNIKK---R-----LQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD-K 525 (731)
Q Consensus 463 l~~----l~~~~~~~~~~~~~~~l~~---~-----L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~-~ 525 (731)
... ......+......++.+++ . ..++.-++|||+++.+. ..|...+......+.+|++|.+ .
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 100 0000000000001222221 1 22445588999998876 4455555555566676665544 3
Q ss_pred hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHH
Q 004772 526 RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQ 584 (731)
Q Consensus 526 ~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 584 (731)
.+... ......|++..++.++..+++.+.+-... .....+....|++.++|.+..+.
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 34332 23346789999999999988887653222 22234566788999999884433
No 79
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=9e-05 Score=80.61 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=105.7
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc--------CcceEEEeecccccccc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD--------FQGKCFMKNVGEESSKM 453 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 453 (731)
|..-.+++|.+..++.+.+.+..+. -.+.+.++|++|+|||++|..+++.+... |....+-. .. ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccCC
Confidence 3445678999999999999886432 25678899999999999999998876432 11111100 00 0000
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeC-Chhhh
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTR-DKRLL 528 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR-~~~v~ 528 (731)
+. .....++..+... -..+++-++++|+++... ..+...+...++.+.+|+++. ...+.
T Consensus 89 ~~-~~i~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 89 SV-DDIRNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred CH-HHHHHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 01 1111222111100 011345589999997654 223333333344555555553 32222
Q ss_pred hh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 529 YK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 529 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.. ......+++.+++.++....+...+..... .-..+.+..++..++|.+-.+...
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~~~~ 209 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDALSI 209 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHH
Confidence 21 123357899999999999998887643221 233567888899999977644443
No 80
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=5.5e-05 Score=85.71 Aligned_cols=193 Identities=16% Similarity=0.129 Sum_probs=109.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.++..+-...... ..+-+.......
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg~C~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---------ATPCGVCESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---------CCcccccHHHHH
Confidence 3445678999999999999986442 245678999999999999999998754211000 000000001111
Q ss_pred HHHhhhcC--C--cccCCCCcHHHHH---HHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-
Q 004772 462 VISQVMGE--N--IKIGTPTITPNIK---KRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD- 524 (731)
Q Consensus 462 ll~~l~~~--~--~~~~~~~~~~~l~---~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~- 524 (731)
+...-... . .+.......+.++ ..+ .++.-++|+|+++... ..+...+...++...+|++|.+
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 11000000 0 0000000122222 111 2345589999998776 4455555555566666655543
Q ss_pred hhhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHH
Q 004772 525 KRLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-ALQVL 586 (731)
Q Consensus 525 ~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 586 (731)
..+... ......+++.+++.++..+.+.+.+-... .....+....|++.++|.+- ++..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG--VVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333322 22346789999999999988887763322 12234566788899999875 44443
No 81
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4.8e-05 Score=87.40 Aligned_cols=198 Identities=14% Similarity=0.141 Sum_probs=112.5
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+....... .....+.......
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c~~c~~c~~ 82 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPCGTCEMCRA 82 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccCHHHHH
Confidence 3445679999999999998886443 245678999999999999999998764211000 0000011112222
Q ss_pred HHHhhhcCCcccCC--CCcHHHHH---HHHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-h
Q 004772 462 VISQVMGENIKIGT--PTITPNIK---KRLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-R 526 (731)
Q Consensus 462 ll~~l~~~~~~~~~--~~~~~~l~---~~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~ 526 (731)
+...........+. ....+.++ +.+. .++-++|||+++... +.+...+....+.+.+|+++.+. .
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 22111110000010 11122222 2222 345689999997765 33444444444566666665443 3
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
+... ......+.+.+++..+....+.+.+.... .....+.+..+++.++|.+..+......+
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~eg--l~i~~eal~~La~~s~Gdlr~al~~LekL 225 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEG--INLEPGALEAIARAATGSMRDAENLLQQL 225 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3221 12235678999999999988887764322 12234677899999999997666554433
No 82
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.9e-05 Score=87.73 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=105.6
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
....+++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-.... .. ..+.+.......+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~----~~-----~~pcg~C~~C~~i 82 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETG----VT-----ATPCGVCSACLEI 82 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC----CC-----CCCCCCCHHHHHH
Confidence 445678999999999999886432 2456789999999999999999987632110 00 0000000000111
Q ss_pred HHhhhcCC--cccCCCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hh
Q 004772 463 ISQVMGEN--IKIGTPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RL 527 (731)
Q Consensus 463 l~~l~~~~--~~~~~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v 527 (731)
...-.... .+.......+.+++.+ .+++-++|+|+++... ..+...+...++.+.+|++|.+. .+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ki 162 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKI 162 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhC
Confidence 00000000 0000011122222221 2455699999998876 33444444445566666655443 22
Q ss_pred hhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 004772 528 LYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLAL 583 (731)
Q Consensus 528 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal 583 (731)
... ......+++.+++.++..+.+.+.+-... .....+....|++.++|.+.-+
T Consensus 163 l~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 163 PVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 211 11235678999999999988877663222 2223456678899999987633
No 83
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=7.7e-05 Score=85.15 Aligned_cols=196 Identities=13% Similarity=0.131 Sum_probs=108.8
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc--CcceEEEeecccccccccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD--FQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
|....+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.. .....|...... +-+.....
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHH
Confidence 3445679999999999999886432 24568899999999999999999876321 110111110000 01111111
Q ss_pred HHHHHhhhcCC--cccCCCCcHHHHHH---HH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-
Q 004772 460 DEVISQVMGEN--IKIGTPTITPNIKK---RL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD- 524 (731)
Q Consensus 460 ~~ll~~l~~~~--~~~~~~~~~~~l~~---~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~- 524 (731)
+.+.......- .+.......+.++. .+ .+.+-++|+||++... +.+...+...++.+.+|++|.+
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 11111100000 00000111222222 22 2345588999998765 3444455544455665555533
Q ss_pred hhhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 004772 525 KRLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLAL 583 (731)
Q Consensus 525 ~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal 583 (731)
..+... ......+++.+++.++....+.+.+-... .....+.+..+++.++|..--+
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHH
Confidence 333322 23456889999999999888877663221 1234567788999999966533
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.22 E-value=3.6e-05 Score=84.80 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=95.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCc--ceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQ--GKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRL 486 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 486 (731)
...+.|+|++|+|||+|+.++++.+..... .+.++. ...+...+...+... ....+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 356889999999999999999998766542 234443 112222333322211 122344444
Q ss_pred cCCCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh-h--------hhhhcCCceEEEcCCCCHHHHHHH
Q 004772 487 QQRKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK-R--------LLYKRGVQSVCEVKGLKHNSALEL 550 (731)
Q Consensus 487 ~~k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~L 550 (731)
.+ .-+|+|||++... ..+...+. ....+..+|+|+... . +...+.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 43 3488999997543 11222221 123456688887642 1 222233345789999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 551 FCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
+.+.+-.. ...-.+++...|++.+.|.+-.|.-+..
T Consensus 277 l~~~~~~~--~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 277 LQKKAEEE--GLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99887432 2233457788888888888876655443
No 85
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.21 E-value=2.1e-06 Score=89.58 Aligned_cols=92 Identities=20% Similarity=0.400 Sum_probs=77.2
Q ss_pred ceeeEEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCC--------
Q 004772 210 CKYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASS-------- 281 (731)
Q Consensus 210 ~~~dvFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S-------- 281 (731)
.+.||||||+... ....++-|.-.|.-+|++||+|-+. +..|. +.+.+.+.|..++.+|.|+||+.++.
T Consensus 611 kq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdK-L~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 611 KQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDK-LYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred CCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhh-hhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 5789999998754 4568999999999999999999866 88776 45788899999999999999998642
Q ss_pred hhhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 004772 282 KWCLDELVKILDCLIKNTGQIVVPVFYR 309 (731)
Q Consensus 282 ~~c~~El~~~~~~~~~~~~~~vlPv~~~ 309 (731)
.|...||.-+++|. +.++|||-.
T Consensus 688 DWVHKEl~~Afe~~-----KNIiPI~D~ 710 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQ-----KNIIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHhc-----CCeeeeecc
Confidence 58888998888876 789999854
No 86
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=0.00014 Score=81.31 Aligned_cols=195 Identities=12% Similarity=0.055 Sum_probs=109.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|.....++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.++..+-..-... ..+.+...-...
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~---------~~pc~~c~nc~~ 81 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE---------GEPCGKCENCVE 81 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC---------CCCCCccHHHHH
Confidence 3444668999999999999986542 245677899999999999999998753210000 000000000000
Q ss_pred HHHhhhcCC--cccCCCCcH---HHHHHHHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEe-CChh
Q 004772 462 VISQVMGEN--IKIGTPTIT---PNIKKRLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITT-RDKR 526 (731)
Q Consensus 462 ll~~l~~~~--~~~~~~~~~---~~l~~~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTT-R~~~ 526 (731)
+...-.... .+....... ..+...+. +++-++|+|+++... +.+...+...++...+|++| +...
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 100000000 000000111 12222222 345699999998765 33444444444455555555 4333
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
+... ......+.+.+++.++....+...+-... .....+.+..+++.++|.+..+..+..
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg--i~id~~al~~La~~s~G~lr~al~~Ld 222 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK--IEYEEKALDLLAQASEGGMRDAASLLD 222 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3222 22345789999999999998888763222 123346678899999998876655543
No 87
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.16 E-value=1.5e-05 Score=86.90 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=95.3
Q ss_pred CCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccc
Q 004772 385 LSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKM 453 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 453 (731)
..++.|++..+++|.+.+.. +-..++-|.|+|++|+|||+||++++++....| +.. .
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v----~--- 197 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRV----V--- 197 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEe----e---
Confidence 35689999999999887632 112356689999999999999999998865432 210 0
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCCc-HHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcC---CC--
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPTI-TPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLD---LF-- 512 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~---~~-- 512 (731)
... +.....+. .... ...+...-...+.+|+||+++... ..+..++. .+
T Consensus 198 -~~~----l~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 198 -GSE----LVQKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -hHH----HhHhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 001 11110000 0001 111222223567899999997641 11222221 11
Q ss_pred CCCCEEEEEeCChhhhh-h----cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 004772 513 SPGSRIIITTRDKRLLY-K----RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGN 579 (731)
Q Consensus 513 ~~gs~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 579 (731)
..+..||.||.....+. . ......+.+++.+.++-.++|..+..+...... .....+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 13456777776543221 1 123467899999999999999887633221111 1134556666554
No 88
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=7.9e-05 Score=84.26 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=111.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+-..... . ....+.....+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~----~-----~~pCg~C~sC~~ 81 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAP----T-----GEPCNTCEQCRK 81 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCC----C-----CCCCcccHHHHH
Confidence 3444668999999888888886432 24678899999999999999999876321100 0 000000111111
Q ss_pred HHHhhhcCCcccCC--CCcHHH---HHHHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-hh
Q 004772 462 VISQVMGENIKIGT--PTITPN---IKKRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD-KR 526 (731)
Q Consensus 462 ll~~l~~~~~~~~~--~~~~~~---l~~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~-~~ 526 (731)
+..........++. ....+. +.+.+ .+++-++|||+++... ..+...+....+...+|++|.+ ..
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 11110000000000 011111 22111 2456699999998875 3344444333445566665554 33
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP-LALQVLGSSL 590 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~~~~L 590 (731)
+... ......+++.+++.++....+...+.... .....+.+..|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 12235789999999999999887664322 1234567788999999965 5776665444
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=7.2e-05 Score=85.83 Aligned_cols=190 Identities=10% Similarity=0.085 Sum_probs=105.8
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|.....++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..-....+- .......
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-----------pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-----------PCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-----------chhHHHH
Confidence 3445668999999999999986442 356678999999999999999998653211000000 0000000
Q ss_pred HHHh-hhcCCcccCCCCcHH---HHHHHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEe-CChhh
Q 004772 462 VISQ-VMGENIKIGTPTITP---NIKKRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITT-RDKRL 527 (731)
Q Consensus 462 ll~~-l~~~~~~~~~~~~~~---~l~~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTT-R~~~v 527 (731)
.... ...-..........+ .+.+.+ .+++-++|+|+++... ..+...+...++...+|++| ....+
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 0000 000000000000111 222222 2455699999998765 33444444444555555544 43344
Q ss_pred hhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 528 LYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 528 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
... ......+++.+++.++....+...+-... .....+.+..+++.++|.+.-+..
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 322 22346889999999999998887653221 122345677899999997753333
No 90
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=5.6e-05 Score=83.44 Aligned_cols=151 Identities=14% Similarity=0.152 Sum_probs=89.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
...+.|+|+.|+|||+|+.++++.+......+.++. ...+...+...+... ....++..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~--------~~~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG--------EMQRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc--------hHHHHHHHcc-
Confidence 356789999999999999999998765444445554 112222332222211 1223444333
Q ss_pred CCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh---------hhhhhcCCceEEEcCCCCHHHHHHHHH
Q 004772 489 RKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK---------RLLYKRGVQSVCEVKGLKHNSALELFC 552 (731)
Q Consensus 489 k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~ 552 (731)
..-+|++||++... +.+...++ ....|..||+||... .+...+.....+++.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 34588899996543 11112211 123466788888542 222233345688999999999999998
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 004772 553 RKAFRQNNRSPDLLELSEEVAHYANGNP 580 (731)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~i~~~~~GlP 580 (731)
+.+-... ..-.+++...|+..+.+.-
T Consensus 282 ~k~~~~~--~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALS--IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCH
Confidence 8873321 2234566677777777665
No 91
>PRK06620 hypothetical protein; Validated
Probab=98.12 E-value=2e-05 Score=78.34 Aligned_cols=139 Identities=9% Similarity=0.055 Sum_probs=85.1
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQR 489 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 489 (731)
+.+.|+|++|+|||+|+..+++.... .++... .. .. ... ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~----~~-----------------------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FF----NE-----------------------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hh----ch-----------------------hHH-hc
Confidence 56899999999999999987765421 222100 00 00 011 12
Q ss_pred CcEEEEeccCCch-hHhhhhcC-CCCCCCEEEEEeCCh-------hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCC
Q 004772 490 KVLIVLHDVDDNS-KSFAVCLD-LFSPGSRIIITTRDK-------RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNN 560 (731)
Q Consensus 490 ~~LLVLDdv~~~~-~~l~~~~~-~~~~gs~IIiTTR~~-------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 560 (731)
.-+|++||++... ..+...++ ....|..+|+|++.. ++...+....++++++++.++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-- 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-- 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--
Confidence 3478899998654 22222222 125577899998743 223334445689999999999888887776321
Q ss_pred CChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 004772 561 RSPDLLELSEEVAHYANGNPLALQVLGSS 589 (731)
Q Consensus 561 ~~~~~~~~~~~i~~~~~GlPLal~~~~~~ 589 (731)
...-.+++.+-|++.+.|.--.+..+-..
T Consensus 164 ~l~l~~ev~~~L~~~~~~d~r~l~~~l~~ 192 (214)
T PRK06620 164 SVTISRQIIDFLLVNLPREYSKIIEILEN 192 (214)
T ss_pred CCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 12234567788888888776666554443
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.11 E-value=3.5e-05 Score=91.76 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=87.6
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC------cceEEEeecccccc----
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF------QGKCFMKNVGEESS---- 451 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~---- 451 (731)
+...+.++||+.++.++.+.|.... ..-+.|+|++|+|||+||..+++++.... ...+|..+.+....
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 4455679999999999999886443 23456999999999999999999875432 12233222111100
Q ss_pred cccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHH-cCCCcEEEEeccCCch---------hHhhhhcCCCCCC-CEEEE
Q 004772 452 KMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRL-QQRKVLIVLHDVDDNS---------KSFAVCLDLFSPG-SRIII 520 (731)
Q Consensus 452 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LLVLDdv~~~~---------~~l~~~~~~~~~g-s~IIi 520 (731)
...+..-++. .+...- .+++++|++|+++... +.-..+.+....| .++|-
T Consensus 261 ~ge~e~~lk~-------------------ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~Ig 321 (852)
T TIGR03345 261 KGEFENRLKS-------------------VIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIA 321 (852)
T ss_pred chHHHHHHHH-------------------HHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEE
Confidence 0001111111 111111 2468999999997653 1111223333344 45555
Q ss_pred EeCChhhh-------hhcCCceEEEcCCCCHHHHHHHHHHh
Q 004772 521 TTRDKRLL-------YKRGVQSVCEVKGLKHNSALELFCRK 554 (731)
Q Consensus 521 TTR~~~v~-------~~~~~~~~~~l~~L~~~ea~~L~~~~ 554 (731)
||.....- ........+.+++++.+++.++|...
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 55532110 01113368899999999999997543
No 93
>PF13173 AAA_14: AAA domain
Probab=98.11 E-value=1.4e-05 Score=72.76 Aligned_cols=116 Identities=18% Similarity=0.246 Sum_probs=69.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQR 489 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 489 (731)
+++.|.|+.|+|||||+++++++.. .-....++. ..... ..... . .+..+.+.+...++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~~~-~~~~~--------~-------~~~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDDPR-DRRLA--------D-------PDLLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCCHH-HHHHh--------h-------hhhHHHHHHhhccC
Confidence 5889999999999999999998765 223344443 11100 00000 0 00223333334447
Q ss_pred CcEEEEeccCCchh---HhhhhcCCCCCCCEEEEEeCChhhhhh------cCCceEEEcCCCCHHHH
Q 004772 490 KVLIVLHDVDDNSK---SFAVCLDLFSPGSRIIITTRDKRLLYK------RGVQSVCEVKGLKHNSA 547 (731)
Q Consensus 490 ~~LLVLDdv~~~~~---~l~~~~~~~~~gs~IIiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 547 (731)
+.+|+||++....+ .+..... ..+..+|++|+.+...+.. .+....+++.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d-~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVD-NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHH-hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999977653 2222222 2356899999987655422 12234678999998773
No 94
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=9.3e-05 Score=83.28 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=96.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccC--cceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDF--QGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
..+.|+|..|+|||.|+.++++.....+ ..+.|+. ...+...+...+... ....+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~--------~~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG--------KGDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc--------cHHHHHHHhh
Confidence 4589999999999999999999876543 2334443 122222332222111 1223444444
Q ss_pred CCCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh---------hhhhhcCCceEEEcCCCCHHHHHHHH
Q 004772 488 QRKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK---------RLLYKRGVQSVCEVKGLKHNSALELF 551 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~ 551 (731)
+ .=+|||||++... ..+..+++ ....+..|||||... .+...+....+++|.+.+.+.-.++|
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 3478899996653 11222222 224466788988753 23344455678899999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 552 CRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
.+++-... .....+++.-|++.+.++.-.|.-+..
T Consensus 456 ~kka~~r~--l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 456 RKKAVQEQ--LNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHHhcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 98873322 233457788888888877666655444
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.0001 Score=82.38 Aligned_cols=191 Identities=15% Similarity=0.095 Sum_probs=111.4
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc-cCcc--eEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG-DFQG--KCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~--~~~~~~~~~~~~~~~~~~l 458 (731)
|....+++|-+...+.|...+..+. -.+...++|+.|+||||+|+.+++.+-. .... -|..+ ..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C------------~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC------------IQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc------------HH
Confidence 3445678999999999999886442 3557789999999999999999987532 1110 00000 00
Q ss_pred HHHHHHhhhcCCc--ccCCCCcHHHHHHHHc--------CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC
Q 004772 459 RDEVISQVMGENI--KIGTPTITPNIKKRLQ--------QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 459 ~~~ll~~l~~~~~--~~~~~~~~~~l~~~L~--------~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~ 524 (731)
...+......... +.......+.+++.+. +++-++|+|+++... ..+...+...++.+++|++|.+
T Consensus 77 C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred HHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 0000000000000 0000001222222221 345589999998876 3444455555667777777765
Q ss_pred hh-hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 004772 525 KR-LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLG 587 (731)
Q Consensus 525 ~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 587 (731)
.. +... ......+++.+++.++....+.+.+-... .....+.+..|++.++|.+.-+..+.
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG--i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG--VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 42 2111 12246789999999999999887763322 12235677889999999986555443
No 96
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00024 Score=81.61 Aligned_cols=192 Identities=14% Similarity=0.129 Sum_probs=107.6
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
....+++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-......- ... -+...-...+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~-----~~~---Cg~C~sC~~~ 84 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAD-----GEA---CNECESCVAF 84 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-----CCC---CCcchHHHHH
Confidence 445678999999999999986442 2566889999999999999999887631110000 000 0000000000
Q ss_pred HHh--hhcCCcccCCCCcHHHHHHHH---c-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEe-CChhh
Q 004772 463 ISQ--VMGENIKIGTPTITPNIKKRL---Q-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITT-RDKRL 527 (731)
Q Consensus 463 l~~--l~~~~~~~~~~~~~~~l~~~L---~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTT-R~~~v 527 (731)
-.. ......+.......+.++..+ . +++=++|+|+++... +.+...+...++.+.+|++| ....+
T Consensus 85 ~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 85 NEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 000 000000000000112222211 1 234588999998875 34555555555666666554 43444
Q ss_pred hhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 528 LYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 528 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
... ......+++.+++.++....+.+.+-... .....+.+..|++.++|...-+..
T Consensus 165 l~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 165 LPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred hHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 332 22346789999999999999987663322 222345678899999997764433
No 97
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.06 E-value=7.5e-05 Score=79.47 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=87.9
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+...+.+..++..+ .-..++.++|++|+|||++|..+++.....+ ..+. ... .. ....+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~----~~~-~~-~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN----GSD-CR-IDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec----cCc-cc-HHHHHH
Confidence 445567899999999999988643 2356777899999999999999998764322 2222 111 11 111111
Q ss_pred HHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCc-h----hHhhhhcCCCCCCCEEEEEeCChhhh-hh-cCCc
Q 004772 462 VISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDN-S----KSFAVCLDLFSPGSRIIITTRDKRLL-YK-RGVQ 534 (731)
Q Consensus 462 ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~-~----~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~~~ 534 (731)
.+..+.... .+...+-+||+|+++.. . ..+...+.....++++|+||.....+ .. ....
T Consensus 87 ~l~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 87 RLTRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111110000 01134558999999876 2 23333344455678888888654211 11 1223
Q ss_pred eEEEcCCCCHHHHHHHHHH
Q 004772 535 SVCEVKGLKHNSALELFCR 553 (731)
Q Consensus 535 ~~~~l~~L~~~ea~~L~~~ 553 (731)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677888888888777654
No 98
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00015 Score=80.43 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=106.5
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+-..-.. . .....+.......
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~----~----~~~~c~~c~~C~~ 83 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPT----E----DQEPCNQCASCKE 83 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcc----c----CCCCCcccHHHHH
Confidence 3445678999999999999886432 24667899999999999999999876321000 0 0000000000000
Q ss_pred HHHhhhcCCcccC--CCCcHHHH---HHHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-hh
Q 004772 462 VISQVMGENIKIG--TPTITPNI---KKRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD-KR 526 (731)
Q Consensus 462 ll~~l~~~~~~~~--~~~~~~~l---~~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~-~~ 526 (731)
+...........+ .....+.+ .+.+ ..++-++|+|+++... +.+...+...++...+|++|.+ ..
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHh
Confidence 0000000000000 00011111 1111 2456789999997664 3344444444456666666643 23
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
+... ......+++.+++.++....+...+-... .....+.+..+++.++|.+.-+..
T Consensus 164 l~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a~~ 221 (451)
T PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDAES 221 (451)
T ss_pred cchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3222 22345789999999999988887663221 123456778899999997754333
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00038 Score=79.97 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=110.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|.....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+-....... ....-+.....+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-------~~~~Cg~C~~C~~ 83 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-------TPEPCGKCELCRA 83 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-------CCCCCcccHHHHH
Confidence 3445678999999999999887543 2356789999999999999999987643210000 0000111122222
Q ss_pred HHHhhhcCCc--ccCCCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-h
Q 004772 462 VISQVMGENI--KIGTPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-R 526 (731)
Q Consensus 462 ll~~l~~~~~--~~~~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~ 526 (731)
+......... ........+.+++.+ .+++-++|+|+++... ..+...+........+|++|.+. .
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 2211110000 000111222333222 1345589999998765 33444444444455555555443 3
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
+... ......+++..++.++....+.+.+-... .....+.+..+++.++|.+..+..+..
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg--i~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES--IEIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3322 22345778899999998888877663211 112345678899999998865554443
No 100
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00035 Score=79.30 Aligned_cols=192 Identities=14% Similarity=0.090 Sum_probs=110.1
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEeecccccccccHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 460 (731)
|....+++|-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. .... .+-+.....+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~----------~pC~~C~~C~ 80 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP----------MPCGECSSCK 80 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC----------CCCccchHHH
Confidence 3445678999999999999986542 35678899999999999999999876321 0000 0000000001
Q ss_pred HHHHhhhcCCcccC--CCCcHHHHHHH--------HcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-
Q 004772 461 EVISQVMGENIKIG--TPTITPNIKKR--------LQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK- 525 (731)
Q Consensus 461 ~ll~~l~~~~~~~~--~~~~~~~l~~~--------L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~- 525 (731)
.+...-.......+ .....+.+++. ..+++-++|+|+++... +.+...+...++...+|++|.+.
T Consensus 81 ~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred HHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 11110000000000 00112222221 12455689999998776 33444444445566666665443
Q ss_pred hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 526 RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 526 ~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.+... ......+++.+++.++..+.+.+.+.... .....+.+..|++.++|.+..+..+
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg--i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ--IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33222 22345689999999999988887764322 2234567788999999988644443
No 101
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.98 E-value=6.9e-05 Score=88.57 Aligned_cols=156 Identities=12% Similarity=0.152 Sum_probs=86.8
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC------cceEEEeecccccccccH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF------QGKCFMKNVGEESSKMGV 455 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 455 (731)
+...+.++||+++++++.+.|.... ..-+.++|++|+|||+||+.+++++...- ...+|..+.
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~--------- 246 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM--------- 246 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH---------
Confidence 3344569999999999999886443 33457999999999999999999874431 223333211
Q ss_pred HHHHHHHHHhhhcCCcccCCCCcHHHHHHHH-cCCCcEEEEeccCCch----------hHhhhhcCCCCCC-CEEEEEeC
Q 004772 456 IHVRDEVISQVMGENIKIGTPTITPNIKKRL-QQRKVLIVLHDVDDNS----------KSFAVCLDLFSPG-SRIIITTR 523 (731)
Q Consensus 456 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LLVLDdv~~~~----------~~l~~~~~~~~~g-s~IIiTTR 523 (731)
.. ++.. .....+.......+.+.+ ..++++|++|+++... +....+.+....| .++|-+|.
T Consensus 247 ~~----l~a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt 319 (731)
T TIGR02639 247 GS----LLAG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTT 319 (731)
T ss_pred HH----Hhhh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecC
Confidence 11 1100 000000001111122222 3468999999997542 1111222333333 34454444
Q ss_pred Chhh------hhh-cCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 524 DKRL------LYK-RGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 524 ~~~v------~~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
..+. -.. ......+.++.++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3211 000 1123578999999999999998654
No 102
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00031 Score=74.44 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=90.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCC----ccc-CCCCcHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGEN----IKI-GTPTITPNIK 483 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~----~~~-~~~~~~~~l~ 483 (731)
.+.+.++|+.|+|||++|..++..+-..-... ..+-+-....+.+...-.... +.. ...-..+.++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~---------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQG---------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 66788999999999999999998753221100 000000001111111000000 000 0001223333
Q ss_pred HH---Hc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-hhhh-cCCceEEEcCCCCHHHHHH
Q 004772 484 KR---LQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-LLYK-RGVQSVCEVKGLKHNSALE 549 (731)
Q Consensus 484 ~~---L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~ 549 (731)
+. +. +++-++|+|+++... ..+...+.-.++++.+|+||.+.. ++.. ......+.+.+++.+++.+
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 22 21 234455789998876 455555555566788888887653 3322 2234578999999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 550 LFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 550 L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.+.... . ....+.+..++..++|.|+....+
T Consensus 173 ~L~~~~-~-----~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQAL-P-----ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhc-c-----cCChHHHHHHHHHcCCCHHHHHHH
Confidence 997653 1 112234567788999999755444
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.97 E-value=4.3e-05 Score=91.36 Aligned_cols=151 Identities=13% Similarity=0.146 Sum_probs=84.4
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-----C-cceEEEeecccccccccHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-----F-QGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
...+||+.+++++.+.|.... ..-+.|+|++|+|||+||..++.++... . ...+|..+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~------------ 244 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG------------ 244 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH------------
Confidence 458999999999999996443 2345699999999999999999887532 1 2234432111
Q ss_pred HHHHHhhhcCCcccCCCC-cHHHHHHHHcCCCcEEEEeccCCch---------hHhhhhcCCCCC-CCEEEEEeCChhhh
Q 004772 460 DEVISQVMGENIKIGTPT-ITPNIKKRLQQRKVLIVLHDVDDNS---------KSFAVCLDLFSP-GSRIIITTRDKRLL 528 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~k~~LLVLDdv~~~~---------~~l~~~~~~~~~-gs~IIiTTR~~~v~ 528 (731)
.++. +.....+.+. +...+......++++|++|+++... +....+.+.... ..++|.+|......
T Consensus 245 -~l~a---g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~ 320 (821)
T CHL00095 245 -LLLA---GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR 320 (821)
T ss_pred -HHhc---cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHH
Confidence 1110 0000000011 1222222223568999999996432 111112222222 34566555544321
Q ss_pred h-------hcCCceEEEcCCCCHHHHHHHHHHh
Q 004772 529 Y-------KRGVQSVCEVKGLKHNSALELFCRK 554 (731)
Q Consensus 529 ~-------~~~~~~~~~l~~L~~~ea~~L~~~~ 554 (731)
. .......+.++..+.++...++...
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 1113356788999999988887643
No 104
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.0003 Score=80.20 Aligned_cols=191 Identities=12% Similarity=0.085 Sum_probs=106.9
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|.+++..+. -.+.+.++|+.|+|||++|+.++..+-..-.. ...+-+.......
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~---------~~~pC~~C~~C~~ 81 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP---------DGEPCNECEICKA 81 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC---------CCCCCCccHHHHH
Confidence 4455679999999999999987543 35667789999999999999999865321100 0000000111111
Q ss_pred HHHhhhcCCcccCC--CCcHHHHH---HHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-hh
Q 004772 462 VISQVMGENIKIGT--PTITPNIK---KRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD-KR 526 (731)
Q Consensus 462 ll~~l~~~~~~~~~--~~~~~~l~---~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~-~~ 526 (731)
+...........+. ....+.++ ... .++.-++|+|+++... ..+...+...++...+|++|.+ ..
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 11110000000110 11222222 221 2345688999998775 3344444444445555555433 33
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHH
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQ 584 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 584 (731)
+... ......+++.+++.++..+.+...+-... .....+.+..+++.++|.+..+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg--i~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEG--IEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 3222 22345788999999999998887763222 12234567788888888776443
No 105
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.93 E-value=0.00013 Score=84.05 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=102.5
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc--cC---cceEEEeecccccccccHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG--DF---QGKCFMKNVGEESSKMGVI 456 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~~~~~~~~~~~~~ 456 (731)
|...+.++|++..+..+.+.+... ....+.|+|++|+||||||+.++..... .+ ...-|+..-.. .......
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~-~l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT-TLRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech-hccCCHH
Confidence 445567899999999988777433 2457899999999999999999865432 11 12233321111 0011111
Q ss_pred HHHHHHH---------------HhhhcC-------------Cc---ccCCCC--cHHHHHHHHcCCCcEEEEeccCCch-
Q 004772 457 HVRDEVI---------------SQVMGE-------------NI---KIGTPT--ITPNIKKRLQQRKVLIVLHDVDDNS- 502 (731)
Q Consensus 457 ~l~~~ll---------------~~l~~~-------------~~---~~~~~~--~~~~l~~~L~~k~~LLVLDdv~~~~- 502 (731)
.+...++ ...+.. .. +....+ ....+.+.+.+++++++-|+.|..+
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 1111111 000000 00 000001 3344555555555555544443322
Q ss_pred ---hHhhhhcCCCCCCCEEEE--EeCChhhhh-h-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 004772 503 ---KSFAVCLDLFSPGSRIII--TTRDKRLLY-K-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHY 575 (731)
Q Consensus 503 ---~~l~~~~~~~~~gs~IIi--TTR~~~v~~-~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~ 575 (731)
+.+...+....+...+++ ||++..... . ......+.+.+++.+|..+++.+.+-... ..-..++...|.++
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~--v~ls~eal~~L~~y 384 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN--VHLAAGVEELIARY 384 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHC
Confidence 111111121222333444 566442211 1 11224678999999999999998763221 11224566667776
Q ss_pred hCCChHHHHHHHHH
Q 004772 576 ANGNPLALQVLGSS 589 (731)
Q Consensus 576 ~~GlPLal~~~~~~ 589 (731)
+..-+.++..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 66557777766543
No 106
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.90 E-value=0.00025 Score=76.09 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=90.5
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
....+.|||..|.|||.|+.++.+......+....+. .+.. .....++..+.. ...+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~se----~f~~~~v~a~~~--------~~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LTSE----DFTNDFVKALRD--------NEMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----ccHH----HHHHHHHHHHHh--------hhHHHHHHhh-
Confidence 3678899999999999999999998877776443333 1121 222222222111 1233445444
Q ss_pred CCCcEEEEeccCCch-------hHhhhhcCCCCCCCEEEEEeCCh---------hhhhhcCCceEEEcCCCCHHHHHHHH
Q 004772 488 QRKVLIVLHDVDDNS-------KSFAVCLDLFSPGSRIIITTRDK---------RLLYKRGVQSVCEVKGLKHNSALELF 551 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~-------~~l~~~~~~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~ 551 (731)
.-=++++||++-.. +.+.........|..||+|++.. ++...+....++++.+++.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 33488999996533 22222222334566899999643 33445556678999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 004772 552 CRKAFRQNNRSPDLLELSEEVAHYANGN 579 (731)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 579 (731)
.+.+-... ....+++..-+++....+
T Consensus 254 ~kka~~~~--~~i~~ev~~~la~~~~~n 279 (408)
T COG0593 254 RKKAEDRG--IEIPDEVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHhcC--CCCCHHHHHHHHHHhhcc
Confidence 99763222 122234444444444433
No 107
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.90 E-value=0.00011 Score=75.81 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=33.8
Q ss_pred CcccchhhHHHHHHhhh---h----------cCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 387 GFVGLNSRIEKIKSLLC---L----------ELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~---~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++|.+...++|.+... . ..+....+.++|++|+||||+|+.++..+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 37888777666654321 1 012345678999999999999999988753
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.89 E-value=9.3e-05 Score=88.51 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=42.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+...+.++||+.++.++.+.|.... ..-+.++|++|+|||+||..++.++..
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 3444569999999999999886543 334569999999999999999998754
No 109
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.89 E-value=1.9e-05 Score=72.02 Aligned_cols=91 Identities=25% Similarity=0.465 Sum_probs=48.3
Q ss_pred eeEEEeeecccCCCChHHHHHHHHHhC-------CCee-eec--------CCCCCCCCCCccHHHHHHHhhccEEEEEec
Q 004772 17 YDVFLSFLGKDTGIGIRDHLAAALRRK-------QIEL-FID--------DEQEPQKGDEISPAVSKAIETSAVSIIIFS 80 (731)
Q Consensus 17 ~dvFis~~~~d~~~~f~~~L~~~l~~~-------~~~~-~~d--------~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S 80 (731)
|.|||||.+.|.. .....|...+... ++.. |.+ +..+......|...|.++|.+|.+.||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999964 3677777777663 2221 111 111222344788899999999999999999
Q ss_pred cCccCccccHHHHHHHHHhhhhcCCeeEeEEe
Q 004772 81 ENYAYSTWCLDELVRILDCKKRNGQTVVPVFY 112 (731)
Q Consensus 81 ~~~~~S~wc~~El~~~~~~~~~~~~~v~Pify 112 (731)
++...|.|+-.|+..+++ .+..||-|-.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 999999999999999888 3345777754
No 110
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00031 Score=80.46 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=106.1
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEeecccccccccHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 460 (731)
|....+++|.+...+.|.+.+..+. -.+.+.++|+.|+||||+|+.++..+-.. ... ..+-+......
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~----------~~~c~~c~~c~ 80 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT----------AEPCNVCPPCV 80 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC----------CCCCCccHHHH
Confidence 3445679999999999999886442 24667899999999999999999875321 100 00000001111
Q ss_pred HHHHhhhcCCcccC--CCCcHHH---HHHHHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-h
Q 004772 461 EVISQVMGENIKIG--TPTITPN---IKKRLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD-K 525 (731)
Q Consensus 461 ~ll~~l~~~~~~~~--~~~~~~~---l~~~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~-~ 525 (731)
.+...-.......+ .....+. +...+. .+.-++|+|+++... ..+...+...++.+.+|++|.+ .
T Consensus 81 ~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred HHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 11100000000000 0001111 222221 334588999998775 3455555545556666655543 3
Q ss_pred hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh-HHHHHH
Q 004772 526 RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP-LALQVL 586 (731)
Q Consensus 526 ~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 586 (731)
.+... ......+++.+++.++....+...+-... .....+....+++.++|.. .++..+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 22235678999999999888877653221 1223456778888888866 444443
No 111
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.88 E-value=1.9e-05 Score=71.98 Aligned_cols=89 Identities=22% Similarity=0.419 Sum_probs=45.3
Q ss_pred eeEEEeccccccccChHHHHHHHHhhc-------Cccc-c---------cccccccCCCCcccHHHHHHhhhceEEEEEe
Q 004772 212 YDVFLSFGGEETRTGIGSHLAAALRRK-------QIEL-F---------IDDEKEANKGDEISPAVSDAIETSLILIVIF 274 (731)
Q Consensus 212 ~dvFis~~~~D~~~~f~~~L~~~L~~~-------g~~~-~---------~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~ 274 (731)
|.|||||.+.|.. .....|.+.+... .+.. | -+..+ ....+.+...|..+|.+|+++||++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ik~~I~~~i~~s~~~IVLi 78 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDD-DSSSEYIKRKIRERIKNSSVTIVLI 78 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS----TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccc-cchHHHHHHHHHHHHhcCCEEEEEe
Confidence 5799999998854 2566666666552 1111 1 11111 2233477889999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHHHHhhcCCCEEEEEE
Q 004772 275 SKDYASSKWCLDELVKILDCLIKNTGQIVVPVF 307 (731)
Q Consensus 275 S~~y~~S~~c~~El~~~~~~~~~~~~~~vlPv~ 307 (731)
|++...|.|+..|+..++. .+.+++.|.
T Consensus 79 g~~T~~s~wV~~EI~~A~~-----~~~~Ii~V~ 106 (130)
T PF08937_consen 79 GPNTAKSKWVNWEIEYALK-----KGKPIIGVY 106 (130)
T ss_dssp -TT----HHHHHHHHHHTT-----T---EEEEE
T ss_pred CCCcccCcHHHHHHHHHHH-----CCCCEEEEE
Confidence 9999999999999998765 446777764
No 112
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.86 E-value=0.0003 Score=78.21 Aligned_cols=159 Identities=18% Similarity=0.305 Sum_probs=87.5
Q ss_pred CCCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccC-----cceEEEeecc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF-----QGKCFMKNVG 447 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~ 447 (731)
...++.|.+..+++|.+.+.. +-..++-+.|+|++|+|||++|+.+++.+...+ ...+|+..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v-- 257 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI-- 257 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec--
Confidence 335578899999999887542 112356689999999999999999999876542 22344431
Q ss_pred cccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHH-HcCCCcEEEEeccCCchh----------------HhhhhcC
Q 004772 448 EESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKR-LQQRKVLIVLHDVDDNSK----------------SFAVCLD 510 (731)
Q Consensus 448 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~k~~LLVLDdv~~~~~----------------~l~~~~~ 510 (731)
... .++....++... ....+....+.. ..+++++|+||+++.... .+...+.
T Consensus 258 --~~~--------eLl~kyvGete~-~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 258 --KGP--------ELLNKYVGETER-QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred --cch--------hhcccccchHHH-HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 100 011000000000 000011112221 235789999999975420 1111122
Q ss_pred CCC--CCCEEEEEeCChhhh-----hhcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 511 LFS--PGSRIIITTRDKRLL-----YKRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 511 ~~~--~gs~IIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
... .+..||.||-....+ ........++++..+.++..++|..+.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 111 233455555433221 111335568999999999999998886
No 113
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.002 Score=67.97 Aligned_cols=191 Identities=13% Similarity=0.081 Sum_probs=107.8
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc---------------CcceEEEeeccccc
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD---------------FQGKCFMKNVGEES 450 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------f~~~~~~~~~~~~~ 450 (731)
.+++|.+...+.|.+.+..+. -.+...++|+.|+||+++|..++..+-.. ++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 358999999999999886442 25788999999999999999999875321 1222333210000
Q ss_pred ccccHHHHHHHHHHhhhcCCcccCCCCcHH---HHHHHHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEE
Q 004772 451 SKMGVIHVRDEVISQVMGENIKIGTPTITP---NIKKRLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRI 518 (731)
Q Consensus 451 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~---~l~~~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~I 518 (731)
...... ...+...+.. ......-..+ .+.+.+. +.+-++|+|+++... ..+...+.-.+ .+.+
T Consensus 82 ~g~~~~---~~~~~~~~~~-~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLK-RKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccc---hhhhhhcccc-ccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000 0000000000 0000010122 2333333 345689999998776 34454554444 4556
Q ss_pred EEEeCCh-hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 519 IITTRDK-RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 519 IiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
|++|.+. .++.. ......+++.+++.++..+.+.+..... ........++..++|.|.....+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHHHH
Confidence 6555443 33332 2334688999999999999998875211 1111235788999999976655443
No 114
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.80 E-value=9.6e-05 Score=80.92 Aligned_cols=150 Identities=18% Similarity=0.290 Sum_probs=87.8
Q ss_pred CCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccc
Q 004772 385 LSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKM 453 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 453 (731)
-.++.|.+.++++|.+.+.. +-..++-+.|+|++|+|||+||+.+++.....| +.+. .+
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f---i~V~----~s--- 251 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF---LRVV----GS--- 251 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE---EEEe----cc---
Confidence 35578999999999887642 112355688999999999999999999876544 1111 00
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcC---CC--C
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLD---LF--S 513 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~---~~--~ 513 (731)
.+ .....+. ........+.....+.+.+|+||+++... ..+..++. .+ .
T Consensus 252 ---eL----~~k~~Ge----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 ---EL----IQKYLGD----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred ---hh----hhhhcch----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 00 1110000 00001222223334678899999985432 01111111 11 2
Q ss_pred CCCEEEEEeCChhhhhh-----cCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 514 PGSRIIITTRDKRLLYK-----RGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 514 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
.+..||.||.....+.. ......+.++..+.++..++|..+.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 35677877775433221 1234678999999999999998776
No 115
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.73 E-value=0.00052 Score=71.32 Aligned_cols=164 Identities=16% Similarity=0.223 Sum_probs=97.9
Q ss_pred CCCcccchhhHHHHHHhhhhcCCC-eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHH
Q 004772 385 LSGFVGLNSRIEKIKSLLCLELGD-VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVI 463 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 463 (731)
.+.|.+|+.++..|..++...+.. +..|-|+|..|.|||.+.+++.+... ...+|+..+. .+....++..++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~e----cft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVE----CFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHH----hccHHHHHHHHH
Confidence 356899999999999999765543 44558999999999999999998763 3357887443 344555666666
Q ss_pred HhhhcCCcccCCCC--------cHHHHHH--HHc--CCCcEEEEeccCCchhH-------hhhhcCCCCCCCEEEEEeCC
Q 004772 464 SQVMGENIKIGTPT--------ITPNIKK--RLQ--QRKVLIVLHDVDDNSKS-------FAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 464 ~~l~~~~~~~~~~~--------~~~~l~~--~L~--~k~~LLVLDdv~~~~~~-------l~~~~~~~~~gs~IIiTTR~ 524 (731)
.+....+....... ....+.+ ... ++.++|||||++...+. +..+........-.|+++--
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 66531111111111 1122222 122 35899999999776521 11111222223334444432
Q ss_pred ---hhhhhhcCCc--eEEEcCCCCHHHHHHHHHHhh
Q 004772 525 ---KRLLYKRGVQ--SVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 525 ---~~v~~~~~~~--~~~~l~~L~~~ea~~L~~~~~ 555 (731)
.......+.. .++..+.-+.+|..+++.+.-
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 2222223333 356788999999999987654
No 116
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.73 E-value=0.00042 Score=75.40 Aligned_cols=179 Identities=17% Similarity=0.239 Sum_probs=97.9
Q ss_pred CCCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSK 452 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 452 (731)
.-.++.|.+...++|.+.+.. +-..++-+.|+|++|+|||+||+.+++.....| ..+. .
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~----~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV----G--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe----h---
Confidence 335688999888888876531 112367789999999999999999998765443 1111 0
Q ss_pred ccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcCC---C--
Q 004772 453 MGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLDL---F-- 512 (731)
Q Consensus 453 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~~---~-- 512 (731)
.. +.....+. ....+...+.......+.+|+||+++... ..+..++.. +
T Consensus 213 ---s~----l~~k~~ge----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 ---SE----FVQKYLGE----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred ---HH----HHHHhcch----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 01 11110000 00002222333334678999999986531 112222211 1
Q ss_pred CCCCEEEEEeCChhhhh-----hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-hHHHHHH
Q 004772 513 SPGSRIIITTRDKRLLY-----KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGN-PLALQVL 586 (731)
Q Consensus 513 ~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~ 586 (731)
..+..||.||...+.+. .......+.++..+.++...+|.....+.. ...+ -....+++.+.|. |--|+.+
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~d--vd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEE--VDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcc--cCHHHHHHHcCCCCHHHHHHH
Confidence 23556777776543221 113456788999999988888876652211 1111 1234566666554 3334433
No 117
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.0013 Score=65.19 Aligned_cols=176 Identities=11% Similarity=0.172 Sum_probs=99.1
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHH----H
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPN----I 482 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~----l 482 (731)
++.+++.++|.-|.|||.+++.+...+-++--..+.+ .....+...+...++..+.. .+.......... +
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i-----~~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVI-----DKPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEe-----cCcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHHH
Confidence 4467999999999999999995555443222222122 22233444555555555544 222222112222 2
Q ss_pred HHHH-cCCC-cEEEEeccCCch----hHhhhhcCCCCCCC---EEEEEeC----Ch---hhhhhcC-CceE-EEcCCCCH
Q 004772 483 KKRL-QQRK-VLIVLHDVDDNS----KSFAVCLDLFSPGS---RIIITTR----DK---RLLYKRG-VQSV-CEVKGLKH 544 (731)
Q Consensus 483 ~~~L-~~k~-~LLVLDdv~~~~----~~l~~~~~~~~~gs---~IIiTTR----~~---~v~~~~~-~~~~-~~l~~L~~ 544 (731)
.... ++++ +.+++|++++.. +.+..+.+.-..++ +|+.--. .. .+..... ...+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 2222 3555 999999997766 23333322222222 2333221 11 1111111 1223 89999999
Q ss_pred HHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 545 NSALELFCRKAFRQNNR-SPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 545 ~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
++...++..+.-+...+ +--..+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999998887433222 223456778899999999999998765
No 118
>CHL00176 ftsH cell division protein; Validated
Probab=97.71 E-value=0.00047 Score=79.32 Aligned_cols=177 Identities=17% Similarity=0.184 Sum_probs=97.5
Q ss_pred CCcccchhhHHHHHHhhhh----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccH
Q 004772 386 SGFVGLNSRIEKIKSLLCL----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGV 455 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 455 (731)
.++.|.++..+++.+.+.. +...++-+.|+|++|+|||+||+.++......| +. .+ .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~----is----~ 249 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS----IS----G 249 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee----cc----H
Confidence 4577887776666655421 111245689999999999999999998753222 21 00 0
Q ss_pred HHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcCC---C--CCC
Q 004772 456 IHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLDL---F--SPG 515 (731)
Q Consensus 456 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~~---~--~~g 515 (731)
..+..... + .........+.......+++|+|||++... ..+..++.. + ..+
T Consensus 250 s~f~~~~~---g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 250 SEFVEMFV---G-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHHhh---h-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 00100000 0 000112334445556779999999996542 122222211 1 234
Q ss_pred CEEEEEeCChhhhh-----hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHH
Q 004772 516 SRIIITTRDKRLLY-----KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVL 586 (731)
Q Consensus 516 s~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~ 586 (731)
..||.||...+.+. .......+.++..+.++-.++|..++-... .........+++.+.| .+--|..+
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCCCCHHHHHHH
Confidence 55666665543221 112346788999999999999988773311 1122345667777776 44444443
No 119
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00094 Score=71.26 Aligned_cols=168 Identities=16% Similarity=0.239 Sum_probs=103.4
Q ss_pred CCCCcccchhhHHHHHHhhhh--cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcc--eEEEeecccccccccHHHHH
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL--ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQG--KCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 459 (731)
.+..++||+.|+..+..++.. ..+..+.+-|.|-+|.|||.+...++.+....... .+++. ...-.....+.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHHH
Confidence 346799999999999998863 33456788899999999999999999887665533 35554 22223344455
Q ss_pred HHHHHhhhcCCc-ccCCCCcHHHHHHHHcCC--CcEEEEeccCCch----hHhhhhcCCC-CCCCEEEEEeCC------h
Q 004772 460 DEVISQVMGENI-KIGTPTITPNIKKRLQQR--KVLIVLHDVDDNS----KSFAVCLDLF-SPGSRIIITTRD------K 525 (731)
Q Consensus 460 ~~ll~~l~~~~~-~~~~~~~~~~l~~~L~~k--~~LLVLDdv~~~~----~~l~~~~~~~-~~gs~IIiTTR~------~ 525 (731)
..++..+..... +....+....+..+..+. .+|+|||..|... ..+..++.|. -+++|+|+.--. +
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 555555421111 111122344444444433 6899999997765 3333344433 346665543221 1
Q ss_pred hhhhhcC-----CceEEEcCCCCHHHHHHHHHHhh
Q 004772 526 RLLYKRG-----VQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 526 ~v~~~~~-----~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
..+..+. ....+..++.+.++-.++|..++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1222221 23467789999999999999998
No 120
>PRK08116 hypothetical protein; Validated
Probab=97.69 E-value=0.00028 Score=72.72 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=56.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQR 489 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 489 (731)
..+.|+|.+|+|||.||.++++.+..+...++++. ...++..+....... .......+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS-----GKEDENEIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc-----ccccHHHHHHHhcCC
Confidence 45789999999999999999998876544455554 222333333222111 111222344445544
Q ss_pred CcEEEEeccCCc--hh----HhhhhcC-CCCCCCEEEEEeCC
Q 004772 490 KVLIVLHDVDDN--SK----SFAVCLD-LFSPGSRIIITTRD 524 (731)
Q Consensus 490 ~~LLVLDdv~~~--~~----~l~~~~~-~~~~gs~IIiTTR~ 524 (731)
. ||||||+... .+ .+...+. ....+..+|+||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4 8999999432 21 1222222 22456678999864
No 121
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.68 E-value=0.00046 Score=82.93 Aligned_cols=155 Identities=11% Similarity=0.118 Sum_probs=86.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC------cceEEEeecccccccccH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF------QGKCFMKNVGEESSKMGV 455 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 455 (731)
+...+.++||+.++.++.+.|.... ..-+.++|++|+|||+||..++.++...+ ...+|..+..
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~-------- 238 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG-------- 238 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH--------
Confidence 3444569999999999999886543 33456899999999999999999875432 1223322110
Q ss_pred HHHHHHHHHhhhcCCcccCCCC-cHHHHHHHHc-CCCcEEEEeccCCch---------hHhhhhcCCCCCC-CEEEEEeC
Q 004772 456 IHVRDEVISQVMGENIKIGTPT-ITPNIKKRLQ-QRKVLIVLHDVDDNS---------KSFAVCLDLFSPG-SRIIITTR 523 (731)
Q Consensus 456 ~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~-~k~~LLVLDdv~~~~---------~~l~~~~~~~~~g-s~IIiTTR 523 (731)
. ++.. .....+... +...+..... +++.+|++|+++... +....+.+....| .++|-+|.
T Consensus 239 -~----l~a~---~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 239 -A----LIAG---AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATT 310 (852)
T ss_pred -H----Hhhc---chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCc
Confidence 1 1000 000000011 1122222212 468999999997653 1112222333333 34554444
Q ss_pred Chhhhh-------hcCCceEEEcCCCCHHHHHHHHHHh
Q 004772 524 DKRLLY-------KRGVQSVCEVKGLKHNSALELFCRK 554 (731)
Q Consensus 524 ~~~v~~-------~~~~~~~~~l~~L~~~ea~~L~~~~ 554 (731)
....-. .......+.++..+.++...++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 332200 1112356789999999999988755
No 122
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.68 E-value=9e-05 Score=78.55 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=58.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc-cCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCC-------cHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG-DFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPT-------ITP 480 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-------~~~ 480 (731)
.+..+|+|++|+||||||+.+++.+.. +|+..+|+..+++. +....++++.+...+-....+.+... ..+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999987754 68999999865552 23566666666532211111111111 111
Q ss_pred HHHHH-HcCCCcEEEEeccCCch
Q 004772 481 NIKKR-LQQRKVLIVLHDVDDNS 502 (731)
Q Consensus 481 ~l~~~-L~~k~~LLVLDdv~~~~ 502 (731)
..... -.++++||++|++....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHH
Confidence 11111 25789999999997654
No 123
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.68 E-value=0.0005 Score=77.73 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=96.6
Q ss_pred CCCCcccchhhHHHHHHhhhh----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKM 453 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 453 (731)
...+++|.+...++|.+++.. +...++-+.++|++|+|||+||+.++......| +. .+
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~--- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS--- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc---
Confidence 345688888777776654431 122245688999999999999999998753322 11 00
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchh---------------Hhhhhc---CCC--C
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSK---------------SFAVCL---DLF--S 513 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~---------------~l~~~~---~~~--~ 513 (731)
...+. ....+ .....+...+.......+.+|+||+++.... .+..++ ..+ .
T Consensus 121 -~~~~~----~~~~g----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 121 -GSDFV----EMFVG----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHH----HHHhc----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 00111 11000 0000122333444456789999999966420 111111 111 2
Q ss_pred CCCEEEEEeCChhh-----hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHH
Q 004772 514 PGSRIIITTRDKRL-----LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVLG 587 (731)
Q Consensus 514 ~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~ 587 (731)
.+..||.||..... .........+.++..+.++-.++|..++-..... . ......+++.+.| .+--|..+.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCCHHHHHHHH
Confidence 23445556654321 1112345678999999988889888776322111 1 1224477777776 445555543
No 124
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00082 Score=69.43 Aligned_cols=146 Identities=20% Similarity=0.345 Sum_probs=80.4
Q ss_pred cccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHH
Q 004772 388 FVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVI 456 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 456 (731)
.=|-+.++++|.+.... +-..++=|.++|++|.|||-||++++++....| +..++ .
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg--------S 219 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG--------S 219 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc--------H
Confidence 44556666666554421 223466788999999999999999999865544 33111 1
Q ss_pred HHHHHHHHhhhcCCcccCCCCcHHHHHHHHc-CCCcEEEEeccCCch---------------hHhhhh---cCCCC--CC
Q 004772 457 HVRDEVISQVMGENIKIGTPTITPNIKKRLQ-QRKVLIVLHDVDDNS---------------KSFAVC---LDLFS--PG 515 (731)
Q Consensus 457 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~k~~LLVLDdv~~~~---------------~~l~~~---~~~~~--~g 515 (731)
++.+...++. ..+...+.+..+ +.+++|.+|.++... ..+..+ +..|. .+
T Consensus 220 ----ElVqKYiGEG-----aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ----ELVQKYIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ----HHHHHHhccc-----hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 2333321211 113333444444 459999999996543 111222 22332 35
Q ss_pred CEEEEEeCChhh-----hhhcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 516 SRIIITTRDKRL-----LYKRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 516 s~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
.+||..|-..+. +.--..+..++++.-+.+.-.++|.-+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 677776543332 2222345677888555555556666555
No 125
>PRK10536 hypothetical protein; Provisional
Probab=97.65 E-value=0.00038 Score=69.95 Aligned_cols=136 Identities=11% Similarity=0.117 Sum_probs=76.6
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH-h-cccCcceEEEeecccccc-----cccH---
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ-I-SGDFQGKCFMKNVGEESS-----KMGV--- 455 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~~--- 455 (731)
..+.+|......+..+|.. ..++.+.|++|.|||+||.+++.+ + ...|...+...-.-.... +...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567888888888888753 248999999999999999999874 3 344544443321111111 1111
Q ss_pred -HHHHHHHHHhhhc----CCcc--c--CCCCcHHHHHHHHcCCC---cEEEEeccCCch-hHhhhhcCCCCCCCEEEEEe
Q 004772 456 -IHVRDEVISQVMG----ENIK--I--GTPTITPNIKKRLQQRK---VLIVLHDVDDNS-KSFAVCLDLFSPGSRIIITT 522 (731)
Q Consensus 456 -~~l~~~ll~~l~~----~~~~--~--~~~~~~~~l~~~L~~k~---~LLVLDdv~~~~-~~l~~~~~~~~~gs~IIiTT 522 (731)
.....-+...+.. .... . ....+.-.-..+++++. -+||+|.+.+.. ......+...+.++++|+|-
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeC
Confidence 1111111111111 0000 0 00000001123455654 499999998877 55556667778999999987
Q ss_pred CCh
Q 004772 523 RDK 525 (731)
Q Consensus 523 R~~ 525 (731)
-..
T Consensus 211 D~~ 213 (262)
T PRK10536 211 DIT 213 (262)
T ss_pred Chh
Confidence 543
No 126
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0024 Score=67.16 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=97.3
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCC---
Q 004772 394 RIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGEN--- 470 (731)
Q Consensus 394 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~--- 470 (731)
..+.|...+..+ .-+..+.++|+.|+||+++|..++..+-..-...+- -... ..++..-...+
T Consensus 12 ~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~------------~c~~-c~~~~~g~HPD~~~ 77 (319)
T PRK08769 12 AYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA------------AQRT-RQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC------------cchH-HHHHhcCCCCCEEE
Confidence 344555555322 225578899999999999999999865322110000 0000 01111100000
Q ss_pred ----cc-cC----CCCcHHHHHHHH---c-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhh
Q 004772 471 ----IK-IG----TPTITPNIKKRL---Q-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLL 528 (731)
Q Consensus 471 ----~~-~~----~~~~~~~l~~~L---~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~ 528 (731)
+. .. ..-.++.+++.. . ++.-++|||+++.+. ..+...+.-.++++.+|++|.+. .++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 00 00 011344444332 2 345689999998876 45555666666788777777654 333
Q ss_pred hh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 529 YK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 529 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.. ......+.+.+++.+++.+.+.... . ....+..++..++|.|+....+
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~~----~----~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQG----V----SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHcC----C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 32 2234678999999999999887542 1 1233567899999999866544
No 127
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.64 E-value=0.0011 Score=68.01 Aligned_cols=188 Identities=11% Similarity=0.108 Sum_probs=109.8
Q ss_pred hhHHHHHHhhhhc-CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcc------eEEEeecccccccccHHHHHHHHHHh
Q 004772 393 SRIEKIKSLLCLE-LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQG------KCFMKNVGEESSKMGVIHVRDEVISQ 465 (731)
Q Consensus 393 ~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~~~l~~~ll~~ 465 (731)
..++.|.++|... ....+-+.|+|.+|+|||++++.+....-..++. ++.+. .....+...+...++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHH
Confidence 3456666666533 3346778999999999999999999876444421 22333 44556777888888888
Q ss_pred hhcCCcccCCCC-cHHHHHHHHcC-CCcEEEEeccCCch-------hHhhhhcCCCCC---CCEEEEEeCCh--------
Q 004772 466 VMGENIKIGTPT-ITPNIKKRLQQ-RKVLIVLHDVDDNS-------KSFAVCLDLFSP---GSRIIITTRDK-------- 525 (731)
Q Consensus 466 l~~~~~~~~~~~-~~~~l~~~L~~-k~~LLVLDdv~~~~-------~~l~~~~~~~~~---gs~IIiTTR~~-------- 525 (731)
++......+... ........++. +-=+||+|++++.. ......+..+++ -+-|.+-|++.
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 776554433333 44445556654 34589999998753 222222222222 23355556543
Q ss_pred hhhhhcCCceEEEcCCCCHH-HHHHHHHHhh--hc-CCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 004772 526 RLLYKRGVQSVCEVKGLKHN-SALELFCRKA--FR-QNNRSPDLLELSEEVAHYANGNPLALQVLG 587 (731)
Q Consensus 526 ~v~~~~~~~~~~~l~~L~~~-ea~~L~~~~~--~~-~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 587 (731)
+.+.. ..++.++....+ |...|+.... .. .....-...+++..|...++|+.=-+..+-
T Consensus 200 QLa~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 200 QLASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 22222 345667766654 4445543322 11 111122356789999999999876665543
No 128
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00043 Score=81.08 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC------cceEEEeecccccccccHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF------QGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
+.++||+.++.++.+.|.... ..-+.|+|++|+|||+||+.+++++...- ....|..+ +
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~---------~---- 250 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD---------I---- 250 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc---------H----
Confidence 458999999999999887533 23446899999999999999998764321 22222210 1
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHH-cCCCcEEEEeccCCch----------hHhhhhcCCCCCC-CEEEEEeCChhh
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRL-QQRKVLIVLHDVDDNS----------KSFAVCLDLFSPG-SRIIITTRDKRL 527 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LLVLDdv~~~~----------~~l~~~~~~~~~g-s~IIiTTR~~~v 527 (731)
..++. +.....+.......+...+ +.++.+|+||+++... +....+.+....| .++|-+|...+.
T Consensus 251 ~~lla---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 251 GSLLA---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred HHHhc---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 11110 0000000111112222222 3567899999997541 1111122223333 344544443321
Q ss_pred hh-------hcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 528 LY-------KRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 528 ~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
.. .......+.++.++.+++.+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 01123578999999999999998653
No 129
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.63 E-value=0.00012 Score=74.33 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=57.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc-cCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCC-------cHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG-DFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPT-------ITP 480 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-------~~~ 480 (731)
...++|.|++|+|||||++.+++.+.. +|+..+|+....+. .....++++.+...+-....+.+... ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999987654 68888898744332 24677777777333111111111111 111
Q ss_pred HHHHH-HcCCCcEEEEeccCCch
Q 004772 481 NIKKR-LQQRKVLIVLHDVDDNS 502 (731)
Q Consensus 481 ~l~~~-L~~k~~LLVLDdv~~~~ 502 (731)
..... -.+++++|++|++....
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhh
Confidence 12211 24789999999997654
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.62 E-value=0.00056 Score=69.18 Aligned_cols=179 Identities=17% Similarity=0.206 Sum_probs=104.4
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc--cCcceEEEeecccccccccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG--DFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
|.....++|.+..+.-|.+.+.. ...+....+|++|.|||+-|..++..+-. -|.+++--.+ ++...+..-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchh
Confidence 44557799999999999998865 34678889999999999999999887533 2333322111 12211211000
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHH---c---CCC-cEEEEeccCCch----hHhhhhcCCCCCCCEEE-EEeCChhh
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRL---Q---QRK-VLIVLHDVDDNS----KSFAVCLDLFSPGSRII-ITTRDKRL 527 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L---~---~k~-~LLVLDdv~~~~----~~l~~~~~~~~~gs~II-iTTR~~~v 527 (731)
..+ . ..+.+.... . .++ -++|||+++.+. ..+......+....+.| ||+--..+
T Consensus 107 ~Ki-k-------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 107 EKI-K-------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred hhh-c-------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 000 0 000111101 0 122 478999998765 33444455555666644 45432221
Q ss_pred hhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 004772 528 LYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL 581 (731)
Q Consensus 528 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPL 581 (731)
... .....-+..++|..++...-|...+-... .+-..+..+.|++.++|--.
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCcHH
Confidence 111 11123568899999999988888874332 33345677889999888543
No 131
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.0021 Score=67.01 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=68.0
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccC--cceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc-
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDF--QGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ- 487 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~- 487 (731)
-+.++|++|+|||++|+.++..+.... ....|+. .+. . .++..+.+.. ...+...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~----~----~l~~~~~g~~--------~~~~~~~~~~ 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR----D----DLVGQYIGHT--------APKTKEILKR 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH----H----HHhHhhcccc--------hHHHHHHHHH
Confidence 578999999999999999887654321 1222332 110 1 1221111110 011122221
Q ss_pred CCCcEEEEeccCCc---------h----hHhhhhcCCCCCCCEEEEEeCChhh--hhhc------CCceEEEcCCCCHHH
Q 004772 488 QRKVLIVLHDVDDN---------S----KSFAVCLDLFSPGSRIIITTRDKRL--LYKR------GVQSVCEVKGLKHNS 546 (731)
Q Consensus 488 ~k~~LLVLDdv~~~---------~----~~l~~~~~~~~~gs~IIiTTR~~~v--~~~~------~~~~~~~l~~L~~~e 546 (731)
-..-+|+||+++.. . ..+...+.....+.+||+++-.... .... .....+++++++.+|
T Consensus 120 a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 120 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 13468999999743 1 2223333333345667776643211 1111 123568999999999
Q ss_pred HHHHHHHhh
Q 004772 547 ALELFCRKA 555 (731)
Q Consensus 547 a~~L~~~~~ 555 (731)
-.+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988876
No 132
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.54 E-value=0.015 Score=62.35 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=98.1
Q ss_pred CcEEEEeccCCchh----HhhhhcCCC-----CCCCEEEEEeCChhh----hhhc--CCceEEEcCCCCHHHHHHHHHHh
Q 004772 490 KVLIVLHDVDDNSK----SFAVCLDLF-----SPGSRIIITTRDKRL----LYKR--GVQSVCEVKGLKHNSALELFCRK 554 (731)
Q Consensus 490 ~~LLVLDdv~~~~~----~l~~~~~~~-----~~gs~IIiTTR~~~v----~~~~--~~~~~~~l~~L~~~ea~~L~~~~ 554 (731)
+=++||||+....+ ....+..|. .+-.+||++|-+... ...+ .+...+.|...+.+.|.++...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 45899999944321 111111121 344578888876532 2222 24567899999999999999998
Q ss_pred hhcCCCC-------------C-----hhHHHHHHHHHHHhCCChHHHHHHHHHhcC-CCHHH-HHHHHHHhcCCCCccHH
Q 004772 555 AFRQNNR-------------S-----PDLLELSEEVAHYANGNPLALQVLGSSLYQ-KSKEQ-WKDKLHKLKLITDPNIY 614 (731)
Q Consensus 555 ~~~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~~~~~L~~-~~~~~-w~~~l~~l~~~~~~~i~ 614 (731)
+...... . ..........++.+||=-.-|..+++.++. .++.+ ...+..+ .+.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q-------sa~ 301 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ-------SAS 301 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH-------HHH
Confidence 8432110 0 123445667888999999999999998865 34332 2222222 112
Q ss_pred HHHHHcHh-------CCCHHHHHHHHHcccccCCcChhHHHhhhcCcc--hHHHHHHHHHHCcCceee
Q 004772 615 KVLKISYD-------GLNWEEKEIFLDVACFFKGEDVDFVTRVQDDPT--SMRNGLNILVEKSLITIS 673 (731)
Q Consensus 615 ~~l~~s~~-------~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~--~~~~~l~~L~~~sLi~~~ 673 (731)
.+.+.-+. .++-...+.+..+-.+.....+++-.-++...- ..+.+|..|.+..||+..
T Consensus 302 eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~~lFk~~~E~~L~aLe~aeLItv~ 369 (431)
T PF10443_consen 302 EIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLSPLFKGNDETALRALEQAELITVT 369 (431)
T ss_pred HHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcccccCCCChHHHHHHHHCCcEEEE
Confidence 22221111 122222333333333334444443333333221 356799999999999987
No 133
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.52 E-value=0.0011 Score=73.95 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=81.8
Q ss_pred CCcccchhhHHHHHHhhh---h-----cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHH
Q 004772 386 SGFVGLNSRIEKIKSLLC---L-----ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIH 457 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~---~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 457 (731)
.++.|.+...+.|.+... . +-..++-|.++|++|+|||.+|+.++......| .-+. ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~-~~---------- 293 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLD-VG---------- 293 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEE-hH----------
Confidence 456787766555544211 1 112356789999999999999999998865332 1111 00
Q ss_pred HHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch-------------hHhhhhcCC---CCCCCEEEEE
Q 004772 458 VRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS-------------KSFAVCLDL---FSPGSRIIIT 521 (731)
Q Consensus 458 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~-------------~~l~~~~~~---~~~gs~IIiT 521 (731)
.+..... ......+...+...-...+++|+||+++... ..+..++.+ ...+.-||.|
T Consensus 294 ---~l~~~~v----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 294 ---KLFGGIV----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---Hhccccc----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0110000 0000002222222223579999999997532 011111211 1233445667
Q ss_pred eCChhh-----hhhcCCceEEEcCCCCHHHHHHHHHHhhhc
Q 004772 522 TRDKRL-----LYKRGVQSVCEVKGLKHNSALELFCRKAFR 557 (731)
Q Consensus 522 TR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 557 (731)
|.+... .........+.++..+.++-.++|..+..+
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 765432 122234567889999999999999887743
No 134
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0027 Score=67.67 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=86.6
Q ss_pred Cccc-chhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC--cceEEEeecccccccccHHHHHHHHH
Q 004772 387 GFVG-LNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF--QGKCFMKNVGEESSKMGVIHVRDEVI 463 (731)
Q Consensus 387 ~fvG-R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll 463 (731)
.++| -+..++.|...+..+. -++...++|+.|+|||++|..+++.+-..- ... +-+.....+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----------CCCcCHHHHHHh
Confidence 3566 6667778877775332 356778999999999999999988753211 000 000000011111
Q ss_pred HhhhcCCc---ccCCC-CcHHHHH---HHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-
Q 004772 464 SQVMGENI---KIGTP-TITPNIK---KRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR- 526 (731)
Q Consensus 464 ~~l~~~~~---~~~~~-~~~~~l~---~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~- 526 (731)
.. ...+. ..+.. ...+.++ +.+ .+.+=++|+|+++... ..+...+.-.++++.+|++|.+..
T Consensus 74 ~~-~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 74 SG-NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred cC-CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 00 00000 00000 0122222 222 2345589999997766 445555665667787887776543
Q ss_pred hhhh-cCCceEEEcCCCCHHHHHHHHHHh
Q 004772 527 LLYK-RGVQSVCEVKGLKHNSALELFCRK 554 (731)
Q Consensus 527 v~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 554 (731)
+... ......+++.+++.++..+.+...
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3322 223467899999999998888654
No 135
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.48 E-value=0.0062 Score=60.63 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=42.2
Q ss_pred CCCCCCcccchhhHHHHHHhhhh--cCCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCL--ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
+...+.++|.+.+.+.|.+-... ......-+.+||..|.|||+|++++.+.+...-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 34456799999999998764321 122355678999999999999999998876554
No 136
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.46 E-value=0.00036 Score=74.43 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=59.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCC---cHHH---
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPT---ITPN--- 481 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~---~~~~--- 481 (731)
...++|+|++|.|||||++.+++.+... |+..+|+..+++. ...+.++++.++..+-....+.+... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4578999999999999999999987655 8888898755332 24677777777544222111111111 1111
Q ss_pred -HHHH-HcCCCcEEEEeccCCch
Q 004772 482 -IKKR-LQQRKVLIVLHDVDDNS 502 (731)
Q Consensus 482 -l~~~-L~~k~~LLVLDdv~~~~ 502 (731)
.... -.+++++|++|++....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHH
Confidence 1111 24789999999997655
No 137
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00046 Score=63.06 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=26.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
+.+.|+|++|+||||+++.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4788999999999999999998876654334444
No 138
>PRK12377 putative replication protein; Provisional
Probab=97.41 E-value=0.00076 Score=68.39 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=29.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...+.|+|.+|+|||+||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457889999999999999999998876655556665
No 139
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0088 Score=63.10 Aligned_cols=172 Identities=9% Similarity=0.077 Sum_probs=96.2
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcC----C
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGE----N 470 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~----~ 470 (731)
.+.|.+.+..+. -++...++|+.|+||+++|..++..+-..-... ...-+.....+.+....... .
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 344555554322 256778999999999999999998653211000 00000011111111110000 0
Q ss_pred cccCCCCcHHHHHH---HHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhh-cCCceE
Q 004772 471 IKIGTPTITPNIKK---RLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYK-RGVQSV 536 (731)
Q Consensus 471 ~~~~~~~~~~~l~~---~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~ 536 (731)
+.....-..+.+++ .+. ++.=++|+|+++.+. ..+...+.-.++++.+|++|.+. .++.. ......
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 00000113333443 222 345588899998876 55666666667777877777765 34433 223467
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 004772 537 CEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLAL 583 (731)
Q Consensus 537 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal 583 (731)
+.+.+++.++..+.+..... .. ...+..++..++|.|+..
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~----~~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSS----AE---ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhc----cC---hHHHHHHHHHcCCCHHHH
Confidence 89999999999999987641 11 123556788899999633
No 140
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0059 Score=64.96 Aligned_cols=173 Identities=12% Similarity=0.092 Sum_probs=95.4
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcC----
Q 004772 394 RIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGE---- 469 (731)
Q Consensus 394 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~---- 469 (731)
..++|.+.+..+ .-...+.++|+.|+||+++|..++..+--.-+.. ...-+...-.+.+.......
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~---------~~~Cg~C~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQG---------HKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHHcCCCCCEEEE
Confidence 344555555432 2256788999999999999999998753210000 00000000011111000000
Q ss_pred CcccC-CCCcHHHHHH---HHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhh-cCCc
Q 004772 470 NIKIG-TPTITPNIKK---RLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYK-RGVQ 534 (731)
Q Consensus 470 ~~~~~-~~~~~~~l~~---~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~ 534 (731)
.+... ..-.++.+++ .+. +++=++|+|+++.+. ..+...+.-.++++.+|++|.+. .++.. ....
T Consensus 80 ~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 80 TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 00000 0012333332 222 345589999998876 45666666666777777777664 34433 2233
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 004772 535 SVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLAL 583 (731)
Q Consensus 535 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal 583 (731)
..+.+.+++.+++.+.+.... .. ..+.+..++..++|.|...
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~----~~---~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV----TM---SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc----CC---CHHHHHHHHHHcCCCHHHH
Confidence 567999999999998886542 11 1233667899999999643
No 141
>PRK08181 transposase; Validated
Probab=97.39 E-value=0.0009 Score=68.71 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=28.1
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.-+.|+|++|+|||.||..+++........+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999988765554556654
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=97.36 E-value=0.0078 Score=62.72 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=68.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc-C-cceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD-F-QGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
..+.++|++|+|||++|+.+++..... + ...-|+. .+ ... +.....+.. .......+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~----l~~~~~g~~----~~~~~~~l~~--- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDD----LVGQYIGHT----APKTKEVLKK--- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHH----HHHHHhccc----hHHHHHHHHH---
Confidence 347899999999999999998865322 1 1111322 11 111 221111100 0001111221
Q ss_pred CCCcEEEEeccCCc---------h----hHhhhhcCCCCCCCEEEEEeCChhhhh--------hcCCceEEEcCCCCHHH
Q 004772 488 QRKVLIVLHDVDDN---------S----KSFAVCLDLFSPGSRIIITTRDKRLLY--------KRGVQSVCEVKGLKHNS 546 (731)
Q Consensus 488 ~k~~LLVLDdv~~~---------~----~~l~~~~~~~~~gs~IIiTTR~~~v~~--------~~~~~~~~~l~~L~~~e 546 (731)
...-+|+||+++.. . ..+.........+.+||+++....... .......+.+++++.+|
T Consensus 121 a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 13459999999753 1 222233333334566777765332210 11234578999999999
Q ss_pred HHHHHHHhhh
Q 004772 547 ALELFCRKAF 556 (731)
Q Consensus 547 a~~L~~~~~~ 556 (731)
..+++...+-
T Consensus 201 l~~I~~~~l~ 210 (287)
T CHL00181 201 LLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHH
Confidence 9999888773
No 143
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.0014 Score=72.59 Aligned_cols=187 Identities=15% Similarity=0.127 Sum_probs=106.7
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
..-.+++|-+...+.|...+..+.- ..-...+|+-|+||||+|+-++..+-..-. . ...+-+-....+.+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri-~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-----~----~~ePC~~C~~Ck~I 82 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRI-AHAYLFSGPRGVGKTTIARILAKALNCENG-----P----TAEPCGKCISCKEI 82 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcc-hhhhhhcCCCCcCchhHHHHHHHHhcCCCC-----C----CCCcchhhhhhHhh
Confidence 3445689999999999999875432 345678999999999999999976421100 0 01111111111222
Q ss_pred HHhhhcCCcccC--CCCcHHHHHHHHc--------CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-h
Q 004772 463 ISQVMGENIKIG--TPTITPNIKKRLQ--------QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-L 527 (731)
Q Consensus 463 l~~l~~~~~~~~--~~~~~~~l~~~L~--------~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v 527 (731)
...-......++ .....+.+++... ++.=+.|+|.|+... ..+...+.-.+++...|+.|.+.+ +
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 211000011111 1114444444432 234488999998876 334444444456666666666542 2
Q ss_pred hh-hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 004772 528 LY-KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL 581 (731)
Q Consensus 528 ~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPL 581 (731)
.. -....+.|.+..++.++-...+...+-... -...++....|++..+|...
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEGSLR 215 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCCChh
Confidence 21 223446789999999998888887773222 22334556667777777443
No 144
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0048 Score=66.71 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=74.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
....+.+.|++|+|||+||..++.. ..|+.+--++ ....-++.+-.+-. .........-+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~--------------~i~k~F~DAYk 596 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCA--------------HIKKIFEDAYK 596 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHH--------------HHHHHHHHhhc
Confidence 4567889999999999999998765 4565443332 11111111110000 01112223334
Q ss_pred CCCcEEEEeccCCch--------------hHhhhhcCCCC-CCCE--EEEEeCChhhhhhcCC----ceEEEcCCCCH-H
Q 004772 488 QRKVLIVLHDVDDNS--------------KSFAVCLDLFS-PGSR--IIITTRDKRLLYKRGV----QSVCEVKGLKH-N 545 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~--------------~~l~~~~~~~~-~gs~--IIiTTR~~~v~~~~~~----~~~~~l~~L~~-~ 545 (731)
..--.||+||++..- +.+.-++...+ .|-| |+-||....++..++. ...+.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 455689999996654 22333333333 3444 4447777788887763 35789999988 7
Q ss_pred HHHHHHHHhh
Q 004772 546 SALELFCRKA 555 (731)
Q Consensus 546 ea~~L~~~~~ 555 (731)
+..+.++..-
T Consensus 677 ~~~~vl~~~n 686 (744)
T KOG0741|consen 677 QLLEVLEELN 686 (744)
T ss_pred HHHHHHHHcc
Confidence 7777776653
No 145
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.33 E-value=0.0019 Score=76.64 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=92.0
Q ss_pred CCCcccchhhHHHHHHhhhhc-----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccc
Q 004772 385 LSGFVGLNSRIEKIKSLLCLE-----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKM 453 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 453 (731)
..++.|.+..+++|.+.+... -...+-+.|+|++|+|||+||+.+++.....| +.+.. .
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~----~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISING----P--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEec----H---
Confidence 345889999999998876421 12346688999999999999999998765433 22210 0
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcCCC-CCCCE
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLDLF-SPGSR 517 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~~~-~~gs~ 517 (731)
. +..... ......+...+.....+.+.+|+||+++... ..+...+... ..+..
T Consensus 247 ---~----i~~~~~----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 ---E----IMSKYY----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred ---H----Hhcccc----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 0 000000 0000002223333344567899999986532 1122222222 23334
Q ss_pred EEE-EeCChh-hhhhc----CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 004772 518 III-TTRDKR-LLYKR----GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP 580 (731)
Q Consensus 518 IIi-TTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 580 (731)
++| ||.... +-... .....+.+...+.++-.+++....-. ..... ......+++.+.|.-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCcc--ccCHHHHHHhCCCCC
Confidence 444 444332 11111 13456788888888888888755421 11111 122456677777654
No 146
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.32 E-value=0.00023 Score=66.76 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=55.3
Q ss_pred eEEEecccccc-ccChHHHHHHHHhhc-CcccccccccccCC--CCcccHHHHHHhhhceEEEEEecCCC
Q 004772 213 DVFLSFGGEET-RTGIGSHLAAALRRK-QIELFIDDEKEANK--GDEISPAVSDAIETSLILIVIFSKDY 278 (731)
Q Consensus 213 dvFis~~~~D~-~~~f~~~L~~~L~~~-g~~~~~d~~~~~~~--g~~~~~~i~~ai~~s~~~i~v~S~~y 278 (731)
-|||||+.... +...+..|++.|++. |+.|.+|.++ ... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~-~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWE-LNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHh-hcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999987443 346788999999988 9999999988 643 66788999999999999999999766
No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.31 E-value=0.0017 Score=65.60 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=51.0
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccC
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIG 474 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 474 (731)
+..+.+....-......+.++|.+|+|||+||.++++.+......++++. ...+...+-.....
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~~------ 148 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFSN------ 148 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHhh------
Confidence 34444444322222357889999999999999999998766555555554 22333332222210
Q ss_pred CCCcHHHHHHHHcCCCcEEEEeccCCc
Q 004772 475 TPTITPNIKKRLQQRKVLIVLHDVDDN 501 (731)
Q Consensus 475 ~~~~~~~l~~~L~~k~~LLVLDdv~~~ 501 (731)
.......+.+.+. +.=||||||+...
T Consensus 149 ~~~~~~~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 149 SETSEEQLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred ccccHHHHHHHhc-cCCEEEEeCCCCC
Confidence 0112223444455 3448889999554
No 148
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.31 E-value=0.00022 Score=64.92 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEccCCchhhHHHHHHHHHhc
Q 004772 412 VGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999975
No 149
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.30 E-value=0.0054 Score=63.24 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=26.2
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 394 RIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 394 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++++..++..+ +.+.|.|++|+|||+||+.+++...
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 344444444322 3567999999999999999998653
No 150
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0018 Score=71.13 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=63.1
Q ss_pred CCCcccchhhHHHHHHhhhh----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccccc
Q 004772 385 LSGFVGLNSRIEKIKSLLCL----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMG 454 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 454 (731)
..++=|.+..+.+|.+++.. +-..++=|.+||++|+|||.||.+++.+..--| +. .+.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isA--- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISA--- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecc---
Confidence 35678999999999887753 112367789999999999999999998865433 22 000
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch
Q 004772 455 VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS 502 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~ 502 (731)
..+++...+ .....+.+.+.+.-..-++++++|+++...
T Consensus 257 -----peivSGvSG----ESEkkiRelF~~A~~~aPcivFiDeIDAI~ 295 (802)
T KOG0733|consen 257 -----PEIVSGVSG----ESEKKIRELFDQAKSNAPCIVFIDEIDAIT 295 (802)
T ss_pred -----hhhhcccCc----ccHHHHHHHHHHHhccCCeEEEeecccccc
Confidence 122222111 111114445555556779999999997654
No 151
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.028 Score=59.13 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=94.9
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcC----C
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGE----N 470 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~----~ 470 (731)
.+.|.+.+..+ .-++.+.++|+.|+||+++|..++..+-..-... ..-+.....+.+....... .
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~----------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQS----------EACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 34455544322 2256788999999999999999998642211000 0000001111111110000 0
Q ss_pred cccCCCC-cHHHHHH---HHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhh-cCCce
Q 004772 471 IKIGTPT-ITPNIKK---RLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYK-RGVQS 535 (731)
Q Consensus 471 ~~~~~~~-~~~~l~~---~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~ 535 (731)
+...... ..+.+++ .+. ++.=++|+|+++... ..+...+.-.++++.+|++|.+. .++.. .....
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 0000011 2233332 222 234588999998876 45556666666777777766654 44433 23346
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 536 VCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 536 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.+.+.+++.+++.+.+.... .. ....++..++|.|+....+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 78999999999999987642 11 1346788999999976544
No 152
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.27 E-value=0.0013 Score=75.23 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=43.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcC---CCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLEL---GDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
|....+++|.++.++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556779999999999999987432 2356799999999999999999987653
No 153
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.24 E-value=0.0037 Score=64.08 Aligned_cols=169 Identities=15% Similarity=0.194 Sum_probs=97.0
Q ss_pred CCcccchhhHHHHHHhhhhc--CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc--ccccHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLE--LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES--SKMGVIHVRDE 461 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~l~~~ 461 (731)
..|+|-..+-..|.+++... .++..-|.|+|+.|.|||+|......+ .+.+.-...+...+..- ++-.+..+.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 45899999999999988642 234556889999999999998877665 23332222322222111 12233334444
Q ss_pred HHHhhhcCCccc-CCCCcHHHHHHHHcC------CCcEEEEeccCCch----hHhh-----hhcCCCCCCCEEEEEeCCh
Q 004772 462 VISQVMGENIKI-GTPTITPNIKKRLQQ------RKVLIVLHDVDDNS----KSFA-----VCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 462 ll~~l~~~~~~~-~~~~~~~~l~~~L~~------k~~LLVLDdv~~~~----~~l~-----~~~~~~~~gs~IIiTTR~~ 525 (731)
+..++....... +..+....+...|+. -+++.|+|.+|-.. +.+. ..-..-.|-+-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 433322221111 112234445555543 26899999886654 1111 1112234566677899954
Q ss_pred -------hhhhhcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 526 -------RLLYKRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 526 -------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
.|-.......++-++.++-++-..++....
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 233333344567778888889888887766
No 154
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.23 E-value=0.0052 Score=64.69 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=26.7
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..++.++|||++|+|||.+|+.++..+...|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 3478999999999999999999999875543
No 155
>PRK06526 transposase; Provisional
Probab=97.22 E-value=0.00076 Score=68.85 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=26.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
..-+.|+|++|+|||+||..+..........+.|.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 34578999999999999999998765443334443
No 156
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.21 E-value=0.00042 Score=66.83 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=27.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..-+.|+|.+|+|||.||.++++....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 346889999999999999999987766555566765
No 157
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.18 E-value=0.0052 Score=72.88 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=38.6
Q ss_pred CCcccchhhHHHHHHhhhhc------CC-CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 386 SGFVGLNSRIEKIKSLLCLE------LG-DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+|.+..++.|...+... .+ ...++.++|++|+|||.||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46789999999988877632 11 234678999999999999999998773
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.18 E-value=0.013 Score=70.65 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=40.5
Q ss_pred CCcccchhhHHHHHHhhhhc------CC-CeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 386 SGFVGLNSRIEKIKSLLCLE------LG-DVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..++|.+..++.+...+... .+ ...++.++|++|+|||+||+.++......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 46899999999999888642 11 14578899999999999999999876543
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.17 E-value=0.0012 Score=71.76 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=62.7
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc--cCcceEEEeecccccccccHHHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG--DFQGKCFMKNVGEESSKMGVIHVRDEVI 463 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~~ll 463 (731)
.++++.+..++.+...|... +.+.++|++|+|||++|+.+++.+.. .+..+.|+. .....+...+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~--- 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQ--- 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhc---
Confidence 34778888999998888633 36778999999999999999988754 344555554 233333333221
Q ss_pred HhhhcCCcccCCCC--cHHHHHHHHc--CCCcEEEEeccCCch
Q 004772 464 SQVMGENIKIGTPT--ITPNIKKRLQ--QRKVLIVLHDVDDNS 502 (731)
Q Consensus 464 ~~l~~~~~~~~~~~--~~~~l~~~L~--~k~~LLVLDdv~~~~ 502 (731)
............. ....+..... +++++||+|+++...
T Consensus 244 -G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 244 -GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred -ccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1111111111111 2223333322 468999999997765
No 160
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0026 Score=71.44 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=89.5
Q ss_pred CCcccchhhHHHHHHhhhhc----CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLE----LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
.+-+|.++..++|.+.|... .-..++++++||+|+|||+|++.++..+...|-... ++.......+....+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s----LGGvrDEAEIRGHRRT 398 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS----LGGVRDEAEIRGHRRT 398 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe----cCccccHHHhcccccc
Confidence 46799999999999988742 223579999999999999999999998877762111 1111111000000000
Q ss_pred HHHhhhcCCcccCCCCcHHHHHHHH---cCCCcEEEEeccCCch--------hHhhhhcCCCCC-------------CCE
Q 004772 462 VISQVMGENIKIGTPTITPNIKKRL---QQRKVLIVLHDVDDNS--------KSFAVCLDLFSP-------------GSR 517 (731)
Q Consensus 462 ll~~l~~~~~~~~~~~~~~~l~~~L---~~k~~LLVLDdv~~~~--------~~l~~~~~~~~~-------------gs~ 517 (731)
-+ ......+.+.+ +.++=|++||.++... .++...+.+-.+ =|.
T Consensus 399 YI------------GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 399 YI------------GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred cc------------ccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 00 00122232222 3456688999997654 222222221100 122
Q ss_pred -EEEEeCCh-h-h-hhhcCCceEEEcCCCCHHHHHHHHHHhhh
Q 004772 518 -IIITTRDK-R-L-LYKRGVQSVCEVKGLKHNSALELFCRKAF 556 (731)
Q Consensus 518 -IIiTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 556 (731)
+.|||-|. + + .+.+....++++.+.+.+|-.++-.+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 33455432 2 1 22233457899999999999988887763
No 161
>PRK09183 transposase/IS protein; Provisional
Probab=97.15 E-value=0.0017 Score=66.66 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=25.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+.|+|++|+|||+||..++.........+.|+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45779999999999999999877544433344443
No 162
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.15 E-value=0.0067 Score=57.56 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=70.0
Q ss_pred cchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcC
Q 004772 390 GLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGE 469 (731)
Q Consensus 390 GR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~ 469 (731)
|-+...+.|.+.+..+ .-+..+.++|+.|+||+++|..++..+-..-...- . .+.....+.+.......
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~---------c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-P---------CGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------------SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-C---------CCCCHHHHHHHhccCcc
Confidence 4566677777777533 22557789999999999999999987532211000 0 00000001111000000
Q ss_pred C--cccCCC--C-cHHHHHHH---Hc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-hhhh-
Q 004772 470 N--IKIGTP--T-ITPNIKKR---LQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-LLYK- 530 (731)
Q Consensus 470 ~--~~~~~~--~-~~~~l~~~---L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v~~~- 530 (731)
. ...... . ..+.+++. +. ++.=++||||++.+. ..+...+...+.++++|++|.+.. ++..
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHH
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHH
Confidence 0 000000 1 22222222 21 235589999998876 556666666778899999888764 3222
Q ss_pred cCCceEEEcCCCC
Q 004772 531 RGVQSVCEVKGLK 543 (731)
Q Consensus 531 ~~~~~~~~l~~L~ 543 (731)
......+.+.+|+
T Consensus 150 ~SRc~~i~~~~ls 162 (162)
T PF13177_consen 150 RSRCQVIRFRPLS 162 (162)
T ss_dssp HTTSEEEEE----
T ss_pred HhhceEEecCCCC
Confidence 2233456666553
No 163
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.15 E-value=0.0049 Score=73.27 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=93.9
Q ss_pred CCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccccc
Q 004772 386 SGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMG 454 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 454 (731)
.++.|.+...++|.+.+.. +-..++-+.++|++|+|||+||+.+++.....| +.+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~------~--- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR------G--- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe------h---
Confidence 4577888887777775531 112345688999999999999999999865443 1111 0
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch-------------hH---hhhhcCCC--CCCC
Q 004772 455 VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS-------------KS---FAVCLDLF--SPGS 516 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~-------------~~---l~~~~~~~--~~gs 516 (731)
. .++....+ .....+...+...-...+.+|+||+++... .. +...+... ..+.
T Consensus 521 -~----~l~~~~vG----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 -P----EILSKWVG----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -H----HHhhcccC----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 0 11111000 000012222333334568999999996532 01 11111111 2234
Q ss_pred EEEEEeCChhhhh-h----cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh-HHHHHH
Q 004772 517 RIIITTRDKRLLY-K----RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP-LALQVL 586 (731)
Q Consensus 517 ~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 586 (731)
-||.||...+.+. . ......+.++..+.++-.++|..+.-+... .+. .....+++.+.|.- -.|..+
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~--~~l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AED--VDLEELAEMTEGYTGADIEAV 664 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-Ccc--CCHHHHHHHcCCCCHHHHHHH
Confidence 4555665443221 1 134567889999999988998766522111 111 11345666666643 334443
No 164
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.06 Score=57.28 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=58.3
Q ss_pred CCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCC-hhhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 004772 489 RKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRD-KRLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRS 562 (731)
Q Consensus 489 k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 562 (731)
+.=++|+|+++... ..+...+.-.++++.+|++|.+ ..++.. ......+.+.+++.++..+.+.... ..
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----VA 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----CC
Confidence 34588899998876 5556666666677776666655 444433 2234678999999999999997752 11
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHH
Q 004772 563 PDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 563 ~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
+ ...++..++|.|+....+
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755443
No 165
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.12 E-value=0.014 Score=65.61 Aligned_cols=200 Identities=12% Similarity=0.131 Sum_probs=121.6
Q ss_pred CCCCcccchhhHHHHHHhhhhc--C-CCeEEEEEEccCCchhhHHHHHHHHHhc-----ccCcce--EEEeecccccccc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLE--L-GDVRIVGIWGMGGIGKTTIASVIFHQIS-----GDFQGK--CFMKNVGEESSKM 453 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~--~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~--~~~~~~~~~~~~~ 453 (731)
.+..+-+|+.|..+|...+..- . +....+-|.|.+|.|||..+..|.+.+. ..-+.. +.++ ...-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN----gm~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN----GLRLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc----ceeec
Confidence 5567889999999999988632 2 3355888999999999999999987543 122222 3333 22223
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc-----CCCcEEEEeccCCch----hHhhhhcCCC-CCCCEEEEEeC
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLF-SPGSRIIITTR 523 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~-~~gs~IIiTTR 523 (731)
....+...+...+....... ....+.|..+.. .+.+++++|+++.+. +.+-.++.|. .++++++|-+-
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred CHHHHHHHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEe
Confidence 35566666666655443221 123444544443 347899999997765 5555666766 45777655432
Q ss_pred -Ch----------hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 524 -DK----------RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNR-SPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 524 -~~----------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
+. .+...++ ...+...+.++++-.++...++.+-..- ....+=++++++.-.|..-.|+...-+..
T Consensus 548 aNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 21 1122222 2356788999999999988887432221 22233455666666666666666654433
No 166
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.0018 Score=68.58 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=29.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+.++|.+|+|||.||.++++.+......+.|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999998766555566665
No 167
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.002 Score=65.76 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=46.5
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
...-+.++|.+|+|||.||.++.+++....-.+.|+. ..++...+...... ......+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~-------~~~~~~l~~~l~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDE-------GRLEEKLLRELK 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhc-------CchHHHHHHHhh
Confidence 3456889999999999999999999885445566665 33344444332221 112233333333
Q ss_pred CCCcEEEEeccCC
Q 004772 488 QRKVLIVLHDVDD 500 (731)
Q Consensus 488 ~k~~LLVLDdv~~ 500 (731)
.- =||||||+-.
T Consensus 167 ~~-dlLIiDDlG~ 178 (254)
T COG1484 167 KV-DLLIIDDIGY 178 (254)
T ss_pred cC-CEEEEecccC
Confidence 22 3889999944
No 168
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.11 E-value=0.0012 Score=64.52 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=60.7
Q ss_pred chhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH-h-cccCcceEEEeecccccccccH--HHHHHH-----
Q 004772 391 LNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ-I-SGDFQGKCFMKNVGEESSKMGV--IHVRDE----- 461 (731)
Q Consensus 391 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~~~~~--~~l~~~----- 461 (731)
+..+-....+.|. ...++.+.|++|.|||.||.+.+-+ + ...|+..++....-......+. -.+.++
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3445555555554 2458999999999999999998854 3 3567777776543322221111 011111
Q ss_pred --HHHhhhcCCcccCCCCcHHHHH---------HHHcCC---CcEEEEeccCCch-hHhhhhcCCCCCCCEEEEEeCC
Q 004772 462 --VISQVMGENIKIGTPTITPNIK---------KRLQQR---KVLIVLHDVDDNS-KSFAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 462 --ll~~l~~~~~~~~~~~~~~~l~---------~~L~~k---~~LLVLDdv~~~~-~~l~~~~~~~~~gs~IIiTTR~ 524 (731)
+...+..-. ........+. .+++++ ..++|+|++.+.. ..+...+...+.+|++|++--.
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCc
Confidence 111111100 1111111111 123333 5799999998876 6677778888999999998753
No 169
>PRK06921 hypothetical protein; Provisional
Probab=97.10 E-value=0.00082 Score=69.18 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=29.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
...+.++|.+|+|||.||.++++.+..+ ...+.|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578899999999999999999987665 44556665
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0039 Score=66.50 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=80.0
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCc---------------------ceEEEee
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ---------------------GKCFMKN 445 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~~~~~ 445 (731)
.++|-+....++..+.......+..+.++|++|+||||+|.++++.+-.... ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 3577778888888877644333556899999999999999999988653321 111111
Q ss_pred ccccccccc---HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEE
Q 004772 446 VGEESSKMG---VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRI 518 (731)
Q Consensus 446 ~~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~I 518 (731)
.+.... ..+..+.+........ ..++.-+++||+++... ..+.......+..+.+
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 011000 1111111111111000 02456799999998876 4455555556677888
Q ss_pred EEEeCCh-hhhhh-cCCceEEEcCCCCHHHHH
Q 004772 519 IITTRDK-RLLYK-RGVQSVCEVKGLKHNSAL 548 (731)
Q Consensus 519 IiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~ 548 (731)
|++|.+. .+... ......+++.+.+..+..
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchHHHHH
Confidence 8887743 33321 122345666664444433
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0078 Score=72.31 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=39.0
Q ss_pred CCcccchhhHHHHHHhhhhc------CCC-eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 386 SGFVGLNSRIEKIKSLLCLE------LGD-VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..++|.+.-++.+...+... .+. ..++.++|++|+|||+||+.++..+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 45889999999998877532 111 247889999999999999999977643
No 172
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.06 E-value=0.0033 Score=66.06 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=36.6
Q ss_pred cchhhHHHHHHhhhhcC--CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 390 GLNSRIEKIKSLLCLEL--GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 390 GR~~el~~L~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+|...+....+++..-. ...+-+.|+|..|+|||.||.++++.+...-..+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34444444444444211 12456889999999999999999998876555566665
No 173
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.01 E-value=0.0028 Score=69.48 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..++||++.++.+...+..+. -|.|.|++|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 358999999999988775443 4789999999999999999987643
No 174
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.00 E-value=0.0049 Score=70.04 Aligned_cols=48 Identities=27% Similarity=0.480 Sum_probs=37.9
Q ss_pred CCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+++|.+..++.+...+.... ...+.|+|++|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999988764332 3456899999999999999997643
No 175
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0089 Score=66.95 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=85.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccc-cccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESS-KMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
.+-|.|.|+.|+|||+||+++++.+... ..+++..+.+..- ...+.+++..+ ...+...+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence 4568899999999999999999887633 3344443333222 12233333222 223445566
Q ss_pred CCCcEEEEeccCCch------------------hHhhhhcC-CCCCCCE--EEEEeCChhhhh-----hcCCceEEEcCC
Q 004772 488 QRKVLIVLHDVDDNS------------------KSFAVCLD-LFSPGSR--IIITTRDKRLLY-----KRGVQSVCEVKG 541 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~------------------~~l~~~~~-~~~~gs~--IIiTTR~~~v~~-----~~~~~~~~~l~~ 541 (731)
..+-++||||++... ..+.+... ....+.+ +|.|......+. ..-......|..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 789999999995432 11111111 1122333 444544332211 112334678899
Q ss_pred CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHH
Q 004772 542 LKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVLG 587 (731)
Q Consensus 542 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~ 587 (731)
+...+-.++++... .... .....+...-+..+|+| .|.-+.++.
T Consensus 573 p~~~~R~~IL~~~~-s~~~-~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNL-SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cchhHHHHHHHHHH-Hhhh-hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 98888777776554 2221 11222233346777766 366565543
No 176
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.99 E-value=0.0041 Score=74.17 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=40.4
Q ss_pred CCcccchhhHHHHHHhhhh----cCCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 386 SGFVGLNSRIEKIKSLLCL----ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
...+|.+...++|.+++.. +....+++.++|++|+|||+||+.++..+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3578999888888886642 122345789999999999999999999876544
No 177
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.97 E-value=0.028 Score=59.91 Aligned_cols=45 Identities=16% Similarity=0.340 Sum_probs=36.0
Q ss_pred hhhHHHHHHhhhhcC-CCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 392 NSRIEKIKSLLCLEL-GDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 392 ~~el~~L~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+.-.+.|.+.+...+ +...+|+|.|.=|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776543 568899999999999999999999888776
No 178
>PRK04132 replication factor C small subunit; Provisional
Probab=96.95 E-value=0.028 Score=66.32 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=91.6
Q ss_pred EEc--cCCchhhHHHHHHHHHhcc-cCc-ceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCC
Q 004772 414 IWG--MGGIGKTTIASVIFHQISG-DFQ-GKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQR 489 (731)
Q Consensus 414 I~G--~gGiGKTtLA~~~~~~~~~-~f~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 489 (731)
+.| |.++||||+|..+++++-. .+. ...-++ ++...+.. ..+.++..+..... . -..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid-~IR~iIk~~a~~~~-~------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGIN-VIREKVKEFARTKP-I------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHH-HHHHHHHHHHhcCC-c------------CCCC
Confidence 347 7799999999999988633 232 223333 22222222 33333332211100 0 0123
Q ss_pred CcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCCh
Q 004772 490 KVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSP 563 (731)
Q Consensus 490 ~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 563 (731)
.-++|||+++... ..+...+...+..+++|+++.+. .+... ......+.+.+++.++....+...+-... ..
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg--i~ 708 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--LE 708 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--CC
Confidence 4699999999876 44555555556677777766654 33222 22346889999999999888877653221 11
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 564 DLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 564 ~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
...+....|++.++|.+.....+..
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2345778999999998865544433
No 179
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.93 E-value=0.015 Score=63.67 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=87.1
Q ss_pred chhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCC
Q 004772 391 LNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGEN 470 (731)
Q Consensus 391 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~ 470 (731)
|..-+.++.+.+... ..++.|.|+-++|||||++.+.....+. .+++...........+.+.....
T Consensus 22 ~~~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~-------- 87 (398)
T COG1373 22 RRKLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY-------- 87 (398)
T ss_pred HHhhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHH--------
Confidence 334455555555322 2299999999999999996666655444 45554222222222221111111
Q ss_pred cccCCCCcHHHHHHHHcCCCcEEEEeccCCchhHhhhhcCCC--CCCCEEEEEeCChhhhh-----h-cCCceEEEcCCC
Q 004772 471 IKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKSFAVCLDLF--SPGSRIIITTRDKRLLY-----K-RGVQSVCEVKGL 542 (731)
Q Consensus 471 ~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l~~~~~~~--~~gs~IIiTTR~~~v~~-----~-~~~~~~~~l~~L 542 (731)
...-..++.+++||.|....++........ ++. ++++|+-+..... . .+....+.+-||
T Consensus 88 ------------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 88 ------------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred ------------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 111111678999999988764433332221 222 7888877653322 1 133467899999
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 543 KHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 543 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
+..|-..+...... .... ...-+-.-..||.|-++..
T Consensus 155 SF~Efl~~~~~~~~-----~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 155 SFREFLKLKGEEIE-----PSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred CHHHHHhhcccccc-----hhHH-HHHHHHHHHhCCCcHHHhC
Confidence 99998765431110 0011 1122333457888887754
No 180
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.83 E-value=0.011 Score=69.38 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=38.9
Q ss_pred CCcccchhhHHHHHHhhhhc------CC-CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 386 SGFVGLNSRIEKIKSLLCLE------LG-DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..++|.+..++.|.+.+... .+ ....+.++|++|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999998887631 11 245788999999999999999998774
No 181
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0076 Score=61.44 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=27.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc----ccCcceEEE
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS----GDFQGKCFM 443 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~~~~~~ 443 (731)
-|+|.++||||.|||+|++++++++. +.|..+..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 57999999999999999999999753 445444444
No 182
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0065 Score=70.19 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=85.5
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-Cc-----ceEEEeecccccccccHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQ-----GKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~l~ 459 (731)
+..+||+.|+.++.+.|..-..+-+ .++|.+|+|||+++.-++.++... -+ ..++--+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec--------------
Confidence 4589999999999999975432222 378999999999999999987543 21 1111110
Q ss_pred HHHHHhhhcCCcccCCCCcHHH-HHHHHcCCCcEEEEeccCCch----------hHhhhhcCCCCCC-CEEE-EEeCChh
Q 004772 460 DEVISQVMGENIKIGTPTITPN-IKKRLQQRKVLIVLHDVDDNS----------KSFAVCLDLFSPG-SRII-ITTRDKR 526 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~-l~~~L~~k~~LLVLDdv~~~~----------~~l~~~~~~~~~g-s~II-iTTR~~~ 526 (731)
+..-..+.....+.++.... +...-+..+++|++|.++..- +....+.|.+..| .++| .||-++-
T Consensus 234 --~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY 311 (786)
T COG0542 234 --LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY 311 (786)
T ss_pred --HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH
Confidence 11111111111122222222 222223458999999997653 1222233333333 3444 4664331
Q ss_pred h------hhhcCCceEEEcCCCCHHHHHHHHHHh
Q 004772 527 L------LYKRGVQSVCEVKGLKHNSALELFCRK 554 (731)
Q Consensus 527 v------~~~~~~~~~~~l~~L~~~ea~~L~~~~ 554 (731)
- +......+.+.+...+.+++..++.-.
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 0 111123467889999999999998654
No 183
>PRK07261 topology modulation protein; Provisional
Probab=96.81 E-value=0.0045 Score=59.30 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 184
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.81 E-value=0.0018 Score=59.64 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=33.5
Q ss_pred ccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 389 VGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 389 vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
||....++++.+.+..-......|.|+|..|+||+++|+.+...-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577888888888776544445567899999999999999887653
No 185
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.80 E-value=0.0013 Score=69.48 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=41.5
Q ss_pred CcccchhhHHHHHHhhhhcC----CCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 387 GFVGLNSRIEKIKSLLCLEL----GDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+++|.++.++++.+++.... ...++++|+|++|+||||||..++..+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 69999999999999887532 24688999999999999999999987643
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.007 Score=69.92 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=66.3
Q ss_pred CCcccchhhHHHHHHhhhhc-------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLE-------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
...+|.+.-+..+.+.+... ..........|+.|+|||-||++++..+-+.=+.-+-++ ..+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D----------MSEy 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID----------MSEY 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec----------hHHH
Confidence 46799999999998877632 123567888999999999999999988754323223322 2222
Q ss_pred HH-HHHHhhhcCCcccCCCCcHHHHHHHHcCCCc-EEEEeccCCch
Q 004772 459 RD-EVISQVMGENIKIGTPTITPNIKKRLQQRKV-LIVLHDVDDNS 502 (731)
Q Consensus 459 ~~-~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~-LLVLDdv~~~~ 502 (731)
.. .-.+.+.+.++.--.-+-...|-+..+.+|+ +|.||+++...
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH 606 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH 606 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC
Confidence 21 1122233333221111123456667777877 88899997765
No 187
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.78 E-value=0.011 Score=66.51 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=44.1
Q ss_pred CCCCcccchhhHHHHHHhhhhc---CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLE---LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...+++--.+-++++..||... ....+++.|+|++|+||||.++.+++.+. |+..-|..
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 3345666678899999999753 23367999999999999999999998863 44455543
No 188
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.76 E-value=0.0036 Score=62.98 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=36.0
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
|.++|..+-....++.|+|.+|+|||+||.+++.........++|+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44455433344679999999999999999999987766666778876
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.75 E-value=0.00052 Score=63.35 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEccCCchhhHHHHHHHHHh
Q 004772 412 VGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~ 433 (731)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 190
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.73 E-value=0.0012 Score=59.09 Aligned_cols=23 Identities=30% Similarity=0.467 Sum_probs=21.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.73 E-value=0.0069 Score=71.68 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=41.6
Q ss_pred CCcccchhhHHHHHHhhhhc----CCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 386 SGFVGLNSRIEKIKSLLCLE----LGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.+.+|.++..++|.++|... .....++.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45899999999999888632 12356799999999999999999998765444
No 192
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0096 Score=66.81 Aligned_cols=155 Identities=20% Similarity=0.228 Sum_probs=88.8
Q ss_pred CCcccchhhHHHHHHhhhh----cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCL----ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
.+-+|.++..+++.+.+.. ++-+..+++.+|++|+|||++|+.++..+...|. -..++..+....+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf----RfSvGG~tDvAeI------ 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF----RFSVGGMTDVAEI------ 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE----EEeccccccHHhh------
Confidence 4679999999999998863 3445789999999999999999999998766652 1122222211111
Q ss_pred HHHhhhcCCcccCCCCcHHHHHHHHc---CCCcEEEEeccCCch--------hHhhhhcCCC-------------CCCCE
Q 004772 462 VISQVMGENIKIGTPTITPNIKKRLQ---QRKVLIVLHDVDDNS--------KSFAVCLDLF-------------SPGSR 517 (731)
Q Consensus 462 ll~~l~~~~~~~~~~~~~~~l~~~L~---~k~~LLVLDdv~~~~--------~~l~~~~~~~-------------~~gs~ 517 (731)
.+.... -.......+.+.|+ ..+=|+.||.|+... .++...+..- -.-|+
T Consensus 481 -----kGHRRT-YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 481 -----KGHRRT-YVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred -----ccccee-eeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 000000 00012234444444 235588889986653 2233322211 11245
Q ss_pred EE-EEeCCh-hh--hhhcCCceEEEcCCCCHHHHHHHHHHhhh
Q 004772 518 II-ITTRDK-RL--LYKRGVQSVCEVKGLKHNSALELFCRKAF 556 (731)
Q Consensus 518 II-iTTR~~-~v--~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 556 (731)
|+ |.|-|. +. ......-.+++|.+...+|-+.+-.+++.
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 44 333322 11 11122346889999999998888777763
No 193
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.73 E-value=0.0043 Score=60.76 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=49.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCC-CcHHHHHHHH-
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTP-TITPNIKKRL- 486 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~~~~l~~~L- 486 (731)
++++.++|+.|+||||.+..++.+...+-..+..++. ...+.+..+.++.....++-+....... +..+.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~---D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA---DTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE---STSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC---CCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4689999999999999999999887666445555541 2234455555566666555432222221 2223232222
Q ss_pred --c-CCCcEEEEecc
Q 004772 487 --Q-QRKVLIVLHDV 498 (731)
Q Consensus 487 --~-~k~~LLVLDdv 498 (731)
. ++-=++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 2 23347777865
No 194
>PRK04296 thymidine kinase; Provisional
Probab=96.72 E-value=0.0027 Score=62.05 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=59.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcc--cCC-CCcHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIK--IGT-PTITPNIKKRL 486 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~-~~~~~~l~~~L 486 (731)
.++.|+|+.|.||||+|..++.+...+...++++... .....+.. .+...++..... ... .+....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 4678999999999999999999886665444444210 01111111 122222211111 111 112222333 2
Q ss_pred cCCCcEEEEeccCCch-hHhhhhcCC-CCCCCEEEEEeCChh
Q 004772 487 QQRKVLIVLHDVDDNS-KSFAVCLDL-FSPGSRIIITTRDKR 526 (731)
Q Consensus 487 ~~k~~LLVLDdv~~~~-~~l~~~~~~-~~~gs~IIiTTR~~~ 526 (731)
.++.-+||+|.+.-.. +.+..+... ...|..+|+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 2355699999996653 223333333 356889999998743
No 195
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.71 E-value=0.009 Score=71.74 Aligned_cols=108 Identities=10% Similarity=0.153 Sum_probs=61.3
Q ss_pred CCcccchhhHHHHHHhhhhc------CC-CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLE------LG-DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
..++|.+.-++.|...+... .+ ....+.++|+.|+|||+||+.+++.+-..-...+-+. ..+.........
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~- 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSK- 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHH-
Confidence 56889999999998877521 11 1346778999999999999999987643322222222 222221121211
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHHcCCC-cEEEEeccCCch
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRLQQRK-VLIVLHDVDDNS 502 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~-~LLVLDdv~~~~ 502 (731)
++ +. .+..-..+-...+...++.++ .+++||+++...
T Consensus 587 ---l~---g~-~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~ 624 (821)
T CHL00095 587 ---LI---GS-PPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH 624 (821)
T ss_pred ---hc---CC-CCcccCcCccchHHHHHHhCCCeEEEECChhhCC
Confidence 11 11 111001111224555565555 589999998766
No 196
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.018 Score=61.06 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=50.8
Q ss_pred CcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCCh
Q 004772 490 KVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSP 563 (731)
Q Consensus 490 ~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 563 (731)
+-++|+|+++..+ ..+...+....++..+|++|.+.. +... ......+.+.+++.+++.+.+.... ...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCc
Confidence 3455678887765 334444444445677888887753 3322 1223577899999999998886642 111
Q ss_pred hHHHHHHHHHHHhCCChHHH
Q 004772 564 DLLELSEEVAHYANGNPLAL 583 (731)
Q Consensus 564 ~~~~~~~~i~~~~~GlPLal 583 (731)
.. ..+..++|-|+..
T Consensus 189 -~~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 189 -PE----ERLAFHSGAPLFD 203 (325)
T ss_pred -HH----HHHHHhCCChhhh
Confidence 11 1235688999643
No 197
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.69 E-value=0.019 Score=65.77 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
....++|....+.++.+.+..-......|.|+|..|+|||++|+.+.+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 44679999999999998886544444567899999999999999998754
No 198
>PRK06696 uridine kinase; Validated
Probab=96.67 E-value=0.0031 Score=63.40 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=37.1
Q ss_pred chhhHHHHHHhhhh-cCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 391 LNSRIEKIKSLLCL-ELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 391 R~~el~~L~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
|...+++|.+.+.. ..+.+.+|+|.|.+|+||||||..++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 66777788777653 34568899999999999999999999887544
No 199
>PRK08118 topology modulation protein; Reviewed
Probab=96.66 E-value=0.0018 Score=61.73 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=25.7
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc---cCcceEE
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG---DFQGKCF 442 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~~ 442 (731)
.|.|+|++|+||||||+.+++.+.- +++..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5789999999999999999988643 3455555
No 200
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.66 E-value=0.0069 Score=64.36 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=57.9
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC-cceEEEeecccccccccHHHHHHHHHHhhhcCCcccCC
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF-QGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGT 475 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 475 (731)
++.+.+..-. ..+.++|+|.+|+|||||++.+++.+..+. +..+++..+++ ......++++.+...+.....+...
T Consensus 122 RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3555554322 234568999999999999999999876654 33333333322 2334556666665543332211111
Q ss_pred CC---cHHH---HHHHH--cCCCcEEEEeccCCch
Q 004772 476 PT---ITPN---IKKRL--QQRKVLIVLHDVDDNS 502 (731)
Q Consensus 476 ~~---~~~~---l~~~L--~~k~~LLVLDdv~~~~ 502 (731)
.. .... +.+++ .+++++||+|++....
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 11 1111 11122 4789999999995543
No 201
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.65 E-value=0.0086 Score=59.91 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=35.8
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.|..+|..+-....++.|+|.+|+||||||.+++......-..++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 444555433344678999999999999999999988765555667775
No 202
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.64 E-value=0.019 Score=55.91 Aligned_cols=50 Identities=26% Similarity=0.344 Sum_probs=39.1
Q ss_pred CCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
...+.||-+.-+++|.-.... ++.+-+.|.||+|+||||-+..+++.+-+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 345689999999888765543 34667789999999999999999887543
No 203
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.63 E-value=0.0021 Score=64.31 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=29.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
-.++|.|..|+|||+|+..+.......|.++..+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 35679999999999999999999999996666554
No 204
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.62 E-value=0.0068 Score=60.17 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=34.0
Q ss_pred hhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 402 LCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 402 L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
|..+-....++.|+|++|+|||+||.+++.........++|+.
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4333334679999999999999999999987766666788887
No 205
>PHA02244 ATPase-like protein
Probab=96.62 E-value=0.0084 Score=63.55 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=32.0
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..|+|....+..+...+..-......|.|+|++|+|||+||+++++....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44677665554443322211111234678999999999999999988543
No 206
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.61 E-value=0.012 Score=70.56 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=39.2
Q ss_pred CCcccchhhHHHHHHhhhhc-------CCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 386 SGFVGLNSRIEKIKSLLCLE-------LGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..++|.+.-++.+.+.+... .....++.++|++|+|||.||+.++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 46789999999998877531 112457899999999999999999887643
No 207
>PRK07667 uridine kinase; Provisional
Probab=96.60 E-value=0.0041 Score=60.93 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=33.1
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
++.|.+.+....+...+|+|.|.+|+||||||..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345566665555567899999999999999999999877644
No 208
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.59 E-value=0.015 Score=55.45 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=33.7
Q ss_pred cccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 388 FVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
++|....++++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888889988887654433456779999999999999999773
No 209
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.58 E-value=0.0046 Score=58.27 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=27.4
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
++.|+|++|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999987766555566665
No 210
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.57 E-value=0.015 Score=57.52 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=82.1
Q ss_pred CCcccchhhHHH---HHHhhhh----cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 386 SGFVGLNSRIEK---IKSLLCL----ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 386 ~~fvGR~~el~~---L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
++.+|.+.-..+ |.+.|.. +...++-|..+|++|.|||.+|+++++....-| .-+. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~---l~vk----------a--- 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL---LLVK----------A--- 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce---EEec----------h---
Confidence 457888754433 3445542 223478899999999999999999998754322 1111 0
Q ss_pred HHHHHHh-hhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----------------hHhhhhcCCC--CCCCEEE
Q 004772 459 RDEVISQ-VMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----------------KSFAVCLDLF--SPGSRII 519 (731)
Q Consensus 459 ~~~ll~~-l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----------------~~l~~~~~~~--~~gs~II 519 (731)
.+++.. .+.. .....+...+.-+.-++++.||.++... ..+...+... +.|...|
T Consensus 185 -t~liGehVGdg-----ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 185 -TELIGEHVGDG-----ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred -HHHHHHHhhhH-----HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 112211 1110 0011222222233469999999986643 1122222221 3455555
Q ss_pred EEeCChhhhh---hcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 520 ITTRDKRLLY---KRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 520 iTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
..|-+..++. ......-++...-+.+|-.+++..++
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 5555554432 22334556777778888888888887
No 211
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.55 E-value=0.066 Score=57.06 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..++|+...+.++.+.+..-......|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999999888754444456889999999999999988653
No 212
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.54 E-value=0.0068 Score=59.62 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=60.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEE-eecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM-KNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
.++.|+|+.|+||||++..++..+.......++. .+..+...+. ...++ .............+.++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-----~~~~i---~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-----KRSLI---NQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-----cccee---eecccCCCccCHHHHHHHHhcC
Confidence 4789999999999999999888776544433333 2110000000 00011 0111111223366778888888
Q ss_pred CCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhh
Q 004772 489 RKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRL 527 (731)
Q Consensus 489 k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v 527 (731)
.+=++++|++.+... ....+.....|..++.|+.....
T Consensus 74 ~pd~ii~gEird~e~-~~~~l~~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 DPDVILVGEMRDLET-IRLALTAAETGHLVMSTLHTNSA 111 (198)
T ss_pred CcCEEEEcCCCCHHH-HHHHHHHHHcCCEEEEEecCCcH
Confidence 888999999976542 22222222345557777765433
No 213
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.52 E-value=0.026 Score=60.07 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=35.8
Q ss_pred cccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 388 FVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
++|....+.++.+.+..-......|.|+|..|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888887776544444567899999999999999887643
No 214
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.52 E-value=0.0074 Score=61.66 Aligned_cols=92 Identities=16% Similarity=0.306 Sum_probs=55.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhh-hcCC----cccCCCC------
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQV-MGEN----IKIGTPT------ 477 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~~----~~~~~~~------ 477 (731)
-+.++|.|.+|.|||+|+..+++.++.+|...+++..+++-. ....++.+.+...- .... ...+..-
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~--~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT--REGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc--HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356799999999999999999999988887777776554432 33444444444321 0000 0011100
Q ss_pred --cHHHHHHHH---cCCCcEEEEeccCCch
Q 004772 478 --ITPNIKKRL---QQRKVLIVLHDVDDNS 502 (731)
Q Consensus 478 --~~~~l~~~L---~~k~~LLVLDdv~~~~ 502 (731)
..-.+.+++ +++++||++||+-...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 011233444 3789999999995544
No 215
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.50 E-value=0.03 Score=52.48 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=63.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHh-----hhcCCc--ccCCCC-----
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQ-----VMGENI--KIGTPT----- 477 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~-----l~~~~~--~~~~~~----- 477 (731)
..|-|++..|.||||+|...+-+...+-..+.++.-.... ...+-...++.+ .. .+.... ..+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 4677888889999999999998877665556654432221 122222333222 01 000000 000000
Q ss_pred --cHHHHHHHHcC-CCcEEEEeccCCch-------hHhhhhcCCCCCCCEEEEEeCCh
Q 004772 478 --ITPNIKKRLQQ-RKVLIVLHDVDDNS-------KSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 478 --~~~~l~~~L~~-k~~LLVLDdv~~~~-------~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
.....++.+.. .-=|||||++-... +.+...+..-+++..+|+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223334443 34599999984431 44555555556778999999985
No 216
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.023 Score=63.42 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=80.1
Q ss_pred cccchhhHHHHHHhhh-----------hcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHH
Q 004772 388 FVGLNSRIEKIKSLLC-----------LELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVI 456 (731)
Q Consensus 388 fvGR~~el~~L~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 456 (731)
.=|.++...+|.+... .+.+.++-|.++|+||+|||++|+++++.....|-.+ . .
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k------g----- 501 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K------G----- 501 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c------C-----
Confidence 3346655555554332 1334578889999999999999999999876665211 0 0
Q ss_pred HHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------------hHhhhh---cCCCCCCCEEEE-
Q 004772 457 HVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------------KSFAVC---LDLFSPGSRIII- 520 (731)
Q Consensus 457 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------------~~l~~~---~~~~~~gs~IIi- 520 (731)
.++++..-+ .+...+.+.+.+.=+--++++.||.++... ..+..+ +........|+|
T Consensus 502 ---pEL~sk~vG----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 502 ---PELFSKYVG----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred ---HHHHHHhcC----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 112222111 000012222333333457899999886644 111222 222222223332
Q ss_pred --EeCChhhhhh-c---CCceEEEcCCCCHHHHHHHHHHhh
Q 004772 521 --TTRDKRLLYK-R---GVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 521 --TTR~~~v~~~-~---~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
|.|...+-.. + ..+..+.++.-+.+.-.++|..++
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~ 615 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA 615 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHH
Confidence 4554433222 1 245677888888888889998887
No 217
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.49 E-value=0.068 Score=60.71 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=41.4
Q ss_pred CCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 385 LSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...++|+...+.++.+.+..-......|.|+|..|+|||++|+.+.+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 45699999999999988876544456788999999999999999987643
No 218
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.47 E-value=0.068 Score=63.18 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=38.8
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++|+...+..+.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 468999999999887776443334568899999999999999997754
No 219
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.46 E-value=0.012 Score=55.05 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=50.7
Q ss_pred eEEEeeecccCC-CChHHHHHHHHHhC-CCeeeecCCCCCC--CCCCccHHHHHHHhhccEEEEEeccC
Q 004772 18 DVFLSFLGKDTG-IGIRDHLAAALRRK-QIELFIDDEQEPQ--KGDEISPAVSKAIETSAVSIIIFSEN 82 (731)
Q Consensus 18 dvFis~~~~d~~-~~f~~~L~~~l~~~-~~~~~~d~~~~~~--~g~~~~~~i~~~i~~s~~~ivv~S~~ 82 (731)
-|||||+..... ...|-.|...|++. |+.|.+|.- +.. .+.....=+.+.|++++.+|||+|+.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~-~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~ 69 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQW-ELNEIARQGPPRWMERQIREADKVLIVCSPG 69 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHH-hhcccccCCHHHHHHHHHhcCCEEEEEeccc
Confidence 499999985532 25688999999999 999999963 443 25566677888899999999999943
No 220
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.42 E-value=0.008 Score=57.89 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=31.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+|.++|++|+||||+|+.++..+...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 568999999999999999999999887777666664
No 221
>PHA00729 NTP-binding motif containing protein
Probab=96.41 E-value=0.019 Score=56.95 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+.|+|.+|+||||||..+++++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999998753
No 222
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.40 E-value=0.0046 Score=57.64 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=30.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+|.|+|.+|+||||||+++.+++......+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999988777777765
No 223
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0034 Score=57.67 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=26.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc-CcceEE
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCF 442 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~ 442 (731)
--|+|+|++|+|||||+..+++.++.. |...-|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 357899999999999999999988766 644433
No 224
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.40 E-value=0.012 Score=63.62 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=35.5
Q ss_pred HHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 396 EKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 396 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+|.+.|..+-....++.|.|.+|+|||||+.+++.........++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444455333334568999999999999999999988766555666765
No 225
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.36 E-value=0.044 Score=53.90 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=42.0
Q ss_pred CCCCcccchhhHHHHHHhhhh--cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL--ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQG 439 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 439 (731)
....++|.+...+.|.+--.. ..-...-|.+||--|+|||+|++++.+.+...+-.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 345689999998888763321 12234567899999999999999999998777644
No 226
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.33 E-value=0.017 Score=58.07 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC------cceEEEe
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF------QGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 444 (731)
.|.++|..+-....++.|+|++|+|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34444543334467999999999999999999987654444 4567766
No 227
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.33 E-value=0.014 Score=59.09 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=34.7
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.|.+.|..+-....++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344445434344678999999999999999999776544556677776
No 228
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.32 E-value=0.058 Score=59.38 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
.+.++.++|++|+||||+|..++..+......+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999998776543333333
No 229
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.034 Score=61.42 Aligned_cols=126 Identities=15% Similarity=0.203 Sum_probs=71.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCC-cHHHHHHHHc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPT-ITPNIKKRLQ 487 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~ 487 (731)
+.=|.+||++|+|||-||+++++.....| +.. -. .+++...-++ .+. ....+.+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isV----KG--------PELlNkYVGE-----SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISV----KG--------PELLNKYVGE-----SERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Eee----cC--------HHHHHHHhhh-----HHHHHHHHHHHhhc
Confidence 45578999999999999999999977666 221 01 1222221110 111 2222333334
Q ss_pred CCCcEEEEeccCCch------------hHhhhh---cCCC--CCCCEEEEE-eCChhhhhh----cCCceEEEcCCCCHH
Q 004772 488 QRKVLIVLHDVDDNS------------KSFAVC---LDLF--SPGSRIIIT-TRDKRLLYK----RGVQSVCEVKGLKHN 545 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~------------~~l~~~---~~~~--~~gs~IIiT-TR~~~v~~~----~~~~~~~~l~~L~~~ 545 (731)
..+++|.+|.++... ....++ +... ..|.-||-. .|..-+-.. -..+..+-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 679999999997654 111122 2222 124445544 443322221 123456678888889
Q ss_pred HHHHHHHHhhh
Q 004772 546 SALELFCRKAF 556 (731)
Q Consensus 546 ea~~L~~~~~~ 556 (731)
|-.+++....-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999987773
No 230
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.074 Score=56.29 Aligned_cols=58 Identities=17% Similarity=0.000 Sum_probs=37.2
Q ss_pred CceEEEcCCCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 533 VQSVCEVKGLKHNSALELFCRKAFRQNNR-SPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 533 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
...+++++..+.+|+.++..-+.-..-.. ....++.-+++.-..+|+|--+..++.++
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 34578999999999998876554211000 00113445677778899997777676655
No 231
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.15 E-value=0.007 Score=59.40 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=25.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
-+++.|.|++|.|||+++..+...+...-..++++
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ 52 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL 52 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 46788999999999999999887766653333443
No 232
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.029 Score=63.61 Aligned_cols=128 Identities=18% Similarity=0.154 Sum_probs=72.8
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
..+.+.++|++|.|||.||++++......|-..-.- .+++.. ...........+....+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-----------------~l~sk~----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-----------------ELLSKW----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------------HHhccc----cchHHHHHHHHHHHHHc
Confidence 456889999999999999999999765544211110 111110 00011112333444445
Q ss_pred CCCcEEEEeccCCch------------hHhhhhcCC---CCC--CCEEEEEeCChhhhh-h----cCCceEEEcCCCCHH
Q 004772 488 QRKVLIVLHDVDDNS------------KSFAVCLDL---FSP--GSRIIITTRDKRLLY-K----RGVQSVCEVKGLKHN 545 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~------------~~l~~~~~~---~~~--gs~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ 545 (731)
..++.|.+|+++... .....++.. ... +..+|-||-.+.... . ......+.++.-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 789999999996543 111122211 222 333444444332221 1 134567889999999
Q ss_pred HHHHHHHHhhh
Q 004772 546 SALELFCRKAF 556 (731)
Q Consensus 546 ea~~L~~~~~~ 556 (731)
+..+.|..+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998883
No 233
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.08 E-value=0.0067 Score=67.49 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=41.4
Q ss_pred CcccchhhHHHHHHhhh----hcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 387 GFVGLNSRIEKIKSLLC----LELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+++|.++.+++|.+.|. ......+++.++|++|+|||+||+.++.-+...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 58999999999999883 223456899999999999999999998865433
No 234
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.07 E-value=0.028 Score=62.53 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=36.3
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+.+|.+.|..+-....++.|.|.+|+|||||+.+++......-..+.|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44555555434334678999999999999999999887665544566765
No 235
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.026 Score=59.86 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=56.9
Q ss_pred HHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhc--CCccc
Q 004772 396 EKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMG--ENIKI 473 (731)
Q Consensus 396 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~--~~~~~ 473 (731)
.++.+.|-.+-=...++.|-|.+|||||||..+++.++.... .+.++. ...+...+ +--...++. .+...
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~Qi-klRA~RL~~~~~~l~l 151 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQI-KLRADRLGLPTNNLYL 151 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHH-HHHHHHhCCCccceEE
Confidence 444455532222245899999999999999999999998776 677776 11122111 111222332 22222
Q ss_pred CCCCcHHHHHHHHc-CCCcEEEEeccCCc
Q 004772 474 GTPTITPNIKKRLQ-QRKVLIVLHDVDDN 501 (731)
Q Consensus 474 ~~~~~~~~l~~~L~-~k~~LLVLDdv~~~ 501 (731)
-.+.-.+.+.+.+. .++-|+|+|-+...
T Consensus 152 ~aEt~~e~I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 152 LAETNLEDIIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred ehhcCHHHHHHHHHhcCCCEEEEecccee
Confidence 22223344444444 67899999998554
No 236
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.079 Score=61.07 Aligned_cols=175 Identities=17% Similarity=0.197 Sum_probs=95.7
Q ss_pred CCcccchhhHHHHHH---hhhh-------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccH
Q 004772 386 SGFVGLNSRIEKIKS---LLCL-------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGV 455 (731)
Q Consensus 386 ~~fvGR~~el~~L~~---~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 455 (731)
.++.|-++-..+|.+ .|.. +..-++=+.|+|++|.|||-||++++-... +-|+. .+..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSGS--- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSGS--- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----echH---
Confidence 568888866666555 4432 122367788999999999999999987632 33333 1110
Q ss_pred HHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----------------hHhhhhc---CCCCC--
Q 004772 456 IHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----------------KSFAVCL---DLFSP-- 514 (731)
Q Consensus 456 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----------------~~l~~~~---~~~~~-- 514 (731)
+++..+.. .......+.....=.+.++++.+|+++... ..+.+++ ..+..
T Consensus 379 -----EFvE~~~g----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 -----EFVEMFVG----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred -----HHHHHhcc----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 11111000 000001122222223568899999886543 1122222 12222
Q ss_pred CCEEEEEeCChhhhh-----hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 004772 515 GSRIIITTRDKRLLY-----KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLAL 583 (731)
Q Consensus 515 gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal 583 (731)
+.-+|-+|...+++. --..+..+.++.-+...-.++|.-++-..... .+..++++ ++...-|++=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 222333554443322 11245577888888889999998887433222 34455666 888888887654
No 237
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.052 Score=58.12 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=28.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 578999999999999999999987765443444443
No 238
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.02 E-value=0.053 Score=63.24 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=68.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQR 489 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 489 (731)
+-+.|+|++|+|||++|+.++......| +.+. . ..+..... . .........+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is----~------~~~~~~~~----g----~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS----G------SDFVEMFV----G----VGASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe----h------HHhHHhhh----c----ccHHHHHHHHHHHHhcC
Confidence 4488999999999999999988765443 1111 0 00100000 0 00001222233333457
Q ss_pred CcEEEEeccCCch---------------hHhhhhc---CCC--CCCCEEEEEeCChhhhh-h----cCCceEEEcCCCCH
Q 004772 490 KVLIVLHDVDDNS---------------KSFAVCL---DLF--SPGSRIIITTRDKRLLY-K----RGVQSVCEVKGLKH 544 (731)
Q Consensus 490 ~~LLVLDdv~~~~---------------~~l~~~~---~~~--~~gs~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~ 544 (731)
+++|+||+++... ..+..++ ..+ ..+.-+|.||...+.+. . -.....+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 8999999997652 0111121 111 22344555666543321 1 12346778888888
Q ss_pred HHHHHHHHHhh
Q 004772 545 NSALELFCRKA 555 (731)
Q Consensus 545 ~ea~~L~~~~~ 555 (731)
++-.+++..+.
T Consensus 325 ~~R~~Il~~~~ 335 (644)
T PRK10733 325 RGREQILKVHM 335 (644)
T ss_pred HHHHHHHHHHh
Confidence 88888887766
No 239
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=0.03 Score=56.12 Aligned_cols=205 Identities=16% Similarity=0.209 Sum_probs=111.3
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc------cCcceEEEeeccc------ccc--
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG------DFQGKCFMKNVGE------ESS-- 451 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~------~~~-- 451 (731)
+.+.++++.-..|..+.. .++.+-..++|+.|.||-|.+..+.+++-+ +-+...|...... .+.
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 346777777777776654 234667889999999999999988876532 1133344432111 000
Q ss_pred ---------cccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCc-EEEEeccCCch----hHhhhhcCCCCCCCE
Q 004772 452 ---------KMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKV-LIVLHDVDDNS----KSFAVCLDLFSPGSR 517 (731)
Q Consensus 452 ---------~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~-LLVLDdv~~~~----~~l~~~~~~~~~gs~ 517 (731)
...-.-+.++++.+.....+- + .-..+.+ ++|+-.++... ..+.....-....+|
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qi-e----------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQI-E----------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcch-h----------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 001111222222222211000 0 0011233 56676666554 345555555567888
Q ss_pred EEEEeCCh--hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhc--C-
Q 004772 518 IIITTRDK--RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLY--Q- 592 (731)
Q Consensus 518 IIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~--~- 592 (731)
+|+..-+. -+...-...-.+.++..+++|-...+++-+-+..-. -..+++.+|+++++|+-.-.-.+...++ +
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~--lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ--LPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc--CcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 88743321 111111122467899999999999998887433322 2367899999999998543333333222 1
Q ss_pred --------CCHHHHHHHHHHh
Q 004772 593 --------KSKEQWKDKLHKL 605 (731)
Q Consensus 593 --------~~~~~w~~~l~~l 605 (731)
-+.-+|+-.+.+.
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred cccccCCCCCCccHHHHHHHH
Confidence 1235687766654
No 240
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.97 E-value=0.068 Score=58.61 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=36.7
Q ss_pred cccchhhHHHHHHhhh-----hcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 388 FVGLNSRIEKIKSLLC-----LELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 388 fvGR~~el~~L~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+-=..+-+.++..||. ...-+.+++.|+|++|+||||..+.++..+.
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3334567888888887 3344578999999999999999999887653
No 241
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.014 Score=55.90 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
+.|.++|.+|+||||+|++++..+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4678999999999999999998776543
No 242
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.89 E-value=0.018 Score=60.49 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=35.1
Q ss_pred HHHhhh-hcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 398 IKSLLC-LELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 398 L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
|..+|. .+-...+++-|+|++|+||||||.+++.........++|+.
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 344443 33344678999999999999999999877666666677776
No 243
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.88 E-value=0.049 Score=56.82 Aligned_cols=130 Identities=16% Similarity=0.192 Sum_probs=70.6
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHH-HH--hcccCcceEEEeeccccccc---------cc
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIF-HQ--ISGDFQGKCFMKNVGEESSK---------MG 454 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~-~~--~~~~f~~~~~~~~~~~~~~~---------~~ 454 (731)
..-+|..+-.--.++|.. +++..|.+.|.+|.|||-||.+.. ++ .+..|...+.....-..... ..
T Consensus 225 Gi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 225 GIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred ccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 345565555544555542 448899999999999999887764 22 23345444333221111111 11
Q ss_pred HHHHHHHHHHhhh---cCCcccCCCCcHHHHHHH-------------HcCC---CcEEEEeccCCch-hHhhhhcCCCCC
Q 004772 455 VIHVRDEVISQVM---GENIKIGTPTITPNIKKR-------------LQQR---KVLIVLHDVDDNS-KSFAVCLDLFSP 514 (731)
Q Consensus 455 ~~~l~~~ll~~l~---~~~~~~~~~~~~~~l~~~-------------L~~k---~~LLVLDdv~~~~-~~l~~~~~~~~~ 514 (731)
+..-.+.+...+. ..+.. ....+... .+++ +-++|+|.+.+.. ..+...+...++
T Consensus 303 m~PWmq~i~DnLE~L~~~~~~-----~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~ 377 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNEP-----GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGE 377 (436)
T ss_pred ccchHHHHHhHHHHHhccccc-----chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccC
Confidence 1111222222211 11100 11122222 2333 5699999998877 566677788899
Q ss_pred CCEEEEEeC
Q 004772 515 GSRIIITTR 523 (731)
Q Consensus 515 gs~IIiTTR 523 (731)
|++|+.|--
T Consensus 378 GsKIVl~gd 386 (436)
T COG1875 378 GSKIVLTGD 386 (436)
T ss_pred CCEEEEcCC
Confidence 999999875
No 244
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.87 E-value=0.0065 Score=54.79 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=20.4
Q ss_pred EEEEccCCchhhHHHHHHHHHh
Q 004772 412 VGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~ 433 (731)
|+|.|.+|+||||||+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 245
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.076 Score=57.04 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=27.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC--cceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF--QGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 444 (731)
..+++++|+.|+||||++..++.+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 56899999999999999999998765433 3445544
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.85 E-value=0.019 Score=60.37 Aligned_cols=48 Identities=25% Similarity=0.242 Sum_probs=35.1
Q ss_pred HHHHhhh-hcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 397 KIKSLLC-LELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.|..+|. .+-...+++.|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3344443 33345679999999999999999999877665556667775
No 247
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.85 E-value=0.0073 Score=59.25 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=23.7
Q ss_pred EEEEEccCCchhhHHHHHHHHHhccc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+|+|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999988754
No 248
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.85 E-value=0.031 Score=62.09 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 396 EKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 396 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+|.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455555433334568999999999999999999987764444566765
No 249
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.84 E-value=0.14 Score=58.24 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=36.9
Q ss_pred CCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 385 LSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...++|....+.++.+.+..-......|.|+|..|+||+.||+.+...
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 456999999888888777543223345789999999999999996543
No 250
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.038 Score=60.13 Aligned_cols=47 Identities=26% Similarity=0.288 Sum_probs=33.5
Q ss_pred Ccccch---hhHHHHHHhhhhcC------C-CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 387 GFVGLN---SRIEKIKSLLCLEL------G-DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 387 ~fvGR~---~el~~L~~~L~~~~------~-~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.-|-+ .|++++.+.|.... + =++=|.++|++|.|||-||++++-+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345555 56667777775321 1 15678899999999999999998653
No 251
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.083 Score=59.55 Aligned_cols=173 Identities=15% Similarity=0.123 Sum_probs=87.9
Q ss_pred CCcccchhhHHHHHHhhhhcC-----------CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccccc
Q 004772 386 SGFVGLNSRIEKIKSLLCLEL-----------GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMG 454 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 454 (731)
.+.-|..+..+.|++.+.-.. .-..-|.++|++|+|||-||.+++....-+ |+. +-.
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis----vKG--- 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS----VKG--- 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE----ecC---
Confidence 345566655555555553211 113347899999999999999998774433 333 111
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------------hHhhhhcCCC-----CCCCE
Q 004772 455 VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------------KSFAVCLDLF-----SPGSR 517 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------------~~l~~~~~~~-----~~gs~ 517 (731)
. +++...- ..+.+.......+.-.-++|+|.+|.++... ....+++... -.|.-
T Consensus 735 -P----ElL~KyI----GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 735 -P----ELLSKYI----GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred -H----HHHHHHh----cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 1 2222211 1112224444555556789999999997654 1122222211 12444
Q ss_pred EEE-EeCChhhhhh---cC-CceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHH
Q 004772 518 III-TTRDKRLLYK---RG-VQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLA 582 (731)
Q Consensus 518 IIi-TTR~~~v~~~---~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLa 582 (731)
|+. |||.+-+-.. -+ .+..+.-+.-+..|-+++|......-..+ ..-..+.++.+.+|.--|
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~---~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD---TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc---cccchHHHhhhcCCCchh
Confidence 443 6775432221 11 22333334455666677776655211111 122345666677666543
No 252
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.77 E-value=0.32 Score=51.34 Aligned_cols=48 Identities=31% Similarity=0.170 Sum_probs=33.4
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCChHHH
Q 004772 536 VCEVKGLKHNSALELFCRKAFRQNNRS-PDLLELSEEVAHYANGNPLAL 583 (731)
Q Consensus 536 ~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~GlPLal 583 (731)
++++++++.+|+..++.-..-.+-... ...+...+++.-..+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987763332222 233445566666679999754
No 253
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.77 E-value=0.022 Score=58.57 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=23.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
+.|.|+|.||+||||+|+++...+...-..+.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5789999999999999999998776543333333
No 254
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.70 E-value=0.12 Score=48.66 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=27.4
Q ss_pred cchhhHHHHHHhhhhcC-CCeEEEEEEccCCchhhHHHHHHHH
Q 004772 390 GLNSRIEKIKSLLCLEL-GDVRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 390 GR~~el~~L~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
|.+..++.|.+.+.... .....++++|++|+|||||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 44444555555443111 1244678999999999999998864
No 255
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.70 E-value=0.15 Score=57.54 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..++|....+.++.+.+..-......|.|+|.+|+|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 45899999998888877654444556889999999999999988764
No 256
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.69 E-value=0.037 Score=53.69 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=27.3
Q ss_pred EEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 412 VGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+.|.|++|+|||+||.+++......-..+.|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887655556677775
No 257
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.086 Score=53.35 Aligned_cols=94 Identities=22% Similarity=0.379 Sum_probs=53.2
Q ss_pred CCcccchhhHHHHHHhhh---------h-cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccH
Q 004772 386 SGFVGLNSRIEKIKSLLC---------L-ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGV 455 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~---------~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 455 (731)
.+..|.+.-.+.|.+... . ....-+-|.++|++|.||+-||++++......| ++ .+..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF-----FS----vSSS--- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF-----FS----VSSS--- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce-----EE----eehH---
Confidence 345555555555554321 1 112357789999999999999999997754332 22 1111
Q ss_pred HHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc-CCCcEEEEeccCCc
Q 004772 456 IHVRDEVISQVMGENIKIGTPTITPNIKKRLQ-QRKVLIVLHDVDDN 501 (731)
Q Consensus 456 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~k~~LLVLDdv~~~ 501 (731)
.+.+...++ .+.+...|.+..+ +++-+|.+|.++..
T Consensus 201 -----DLvSKWmGE-----SEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 201 -----DLVSKWMGE-----SEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred -----HHHHHHhcc-----HHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 122221111 1113444444443 68999999999654
No 258
>PRK09354 recA recombinase A; Provisional
Probab=95.66 E-value=0.028 Score=59.61 Aligned_cols=48 Identities=27% Similarity=0.243 Sum_probs=36.1
Q ss_pred HHHHhhh-hcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 397 KIKSLLC-LELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.|..+|. .+-...+++-|+|++|+||||||.+++......-..++|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3444554 33344679999999999999999999887766666777876
No 259
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.029 Score=55.64 Aligned_cols=53 Identities=26% Similarity=0.481 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 387 GFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+.=|-.+++++|.+.... +-+.+.-|.++|++|.|||-+|++++++. ..||+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfir 241 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIR 241 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEe
Confidence 445666666666654321 22346678899999999999999999884 456665
No 260
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.62 E-value=0.19 Score=58.91 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=38.6
Q ss_pred CCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 385 LSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+.++|....+.++.+.+..-......|.|+|..|+||+++|+.+.+..
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568999999998888776443334457899999999999999987653
No 261
>PRK06762 hypothetical protein; Provisional
Probab=95.60 E-value=0.01 Score=56.47 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.+|.|+|++|+||||+|+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 262
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=3 Score=43.71 Aligned_cols=164 Identities=10% Similarity=0.029 Sum_probs=88.8
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc---------Cc-ceEEEeecccccccccHHHHHHHHHH
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD---------FQ-GKCFMKNVGEESSKMGVIHVRDEVIS 464 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~l~~~ll~ 464 (731)
++.+.+.+..+ .-.++..++|..|.||+++|..++..+-.. .+ ...++. .......... .+.+..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d---~~g~~i~vd~-Ir~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD---IFDKDLSKSE-FLSAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec---cCCCcCCHHH-HHHHHH
Confidence 34444555322 225788899999999999999999886211 11 111111 0001111111 111211
Q ss_pred hhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhh-cCCceEEE
Q 004772 465 QVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYK-RGVQSVCE 538 (731)
Q Consensus 465 ~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~~~ 538 (731)
.+.-.. .-.+.+=++|+||++... ..+...+.-.++++.+|++|.+. .++.. ......++
T Consensus 80 ~~~~~~--------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 80 KLYFSS--------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred HhccCC--------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 111000 001356688999987765 34555666667777777666543 44432 33457889
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 539 VKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 539 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
+.+++.++..+.+.... . ..+.+..++...+|.=-|+..
T Consensus 146 f~~l~~~~l~~~l~~~~-----~---~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSKN-----K---EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHcC-----C---ChhHHHHHHHHcCCHHHHHHH
Confidence 99999999998876541 1 123345555556652234443
No 263
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.56 E-value=0.026 Score=56.56 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=32.6
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcce
Q 004772 394 RIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGK 440 (731)
Q Consensus 394 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 440 (731)
+..+|...+....++..+|+|+|+||.|||||..++...++..-..+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~V 60 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRV 60 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--E
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCce
Confidence 44455555555555678999999999999999999998876653333
No 264
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.54 E-value=0.056 Score=51.80 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=26.1
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
++.++|++|+||||++..++..+...-..++.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999988765533334443
No 265
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.54 E-value=0.011 Score=54.63 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+|.++|++|+||||+|+.++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 266
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.53 E-value=0.0092 Score=53.23 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=20.8
Q ss_pred EEEEccCCchhhHHHHHHHHHhcccCcce
Q 004772 412 VGIWGMGGIGKTTIASVIFHQISGDFQGK 440 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 440 (731)
|.|+|.+|+|||+||+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999988777543
No 267
>PTZ00301 uridine kinase; Provisional
Probab=95.52 E-value=0.012 Score=58.32 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=24.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+|+|.|.+|+||||||..+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988775443
No 268
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.52 E-value=0.036 Score=59.48 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=60.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
...+.|+|+.|+||||+...+...+.......++.. ... ...........................++..|+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti----Edp---~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI----EDP---IEYVHRNKRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE----cCC---hhhhccCccceEEccccCCCCcCHHHHHHHhhcc
Confidence 468999999999999999999887765544444432 000 0000000000011111122223467778889999
Q ss_pred CCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCC
Q 004772 489 RKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 489 k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~ 524 (731)
.+=+|++|.+.+..... ..+.....|..++.|...
T Consensus 195 ~pd~i~vgEird~~~~~-~~l~aa~tGh~v~~T~Ha 229 (343)
T TIGR01420 195 DPDVILIGEMRDLETVE-LALTAAETGHLVFGTLHT 229 (343)
T ss_pred CCCEEEEeCCCCHHHHH-HHHHHHHcCCcEEEEEcC
Confidence 99999999997655221 112222345445555543
No 269
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.51 E-value=0.017 Score=59.17 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.4
Q ss_pred EEEEEccCCchhhHHHHHHHHHhccc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+|.++|++|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 270
>PRK14974 cell division protein FtsY; Provisional
Probab=95.51 E-value=0.12 Score=54.98 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.+.++.++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998877654
No 271
>PRK06217 hypothetical protein; Validated
Probab=95.50 E-value=0.053 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.6
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.|.|.|.+|+||||||++++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 272
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.50 E-value=0.11 Score=49.24 Aligned_cols=116 Identities=16% Similarity=0.030 Sum_probs=62.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHh---hhcCC--cccCCCC------
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQ---VMGEN--IKIGTPT------ 477 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~---l~~~~--~~~~~~~------ 477 (731)
...|-|++..|-||||.|..++.+...+--.++.+.-.... ...+-...+..+.-. .+... ...+...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 35778888899999999999998876665445433222111 112222222222000 11100 0000000
Q ss_pred -cHHHHHHHHcCC-CcEEEEeccCCch-------hHhhhhcCCCCCCCEEEEEeCCh
Q 004772 478 -ITPNIKKRLQQR-KVLIVLHDVDDNS-------KSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 478 -~~~~l~~~L~~k-~~LLVLDdv~~~~-------~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
.....++.+... -=|||||.+-... +.+...+..-+++..+|+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 222334444444 4599999984322 44555555567788999999976
No 273
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.50 E-value=0.011 Score=47.14 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 274
>PRK08233 hypothetical protein; Provisional
Probab=95.49 E-value=0.011 Score=57.15 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 275
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.49 E-value=0.013 Score=58.23 Aligned_cols=27 Identities=44% Similarity=0.668 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999999876
No 276
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.26 Score=48.59 Aligned_cols=44 Identities=32% Similarity=0.543 Sum_probs=31.1
Q ss_pred cchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 390 GLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 390 GR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
|.+..+++|.+.+.. +-..+.-+.++|++|.|||-||+++++..
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence 445666666655432 11235668899999999999999998763
No 277
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.43 E-value=0.044 Score=61.90 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++.++|++|+||||||.-++++.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc
Confidence 47899999999999999999988773
No 278
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.19 Score=54.25 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.|=-.++||||.|||++..++++.+.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC
Confidence 45578999999999999999988753
No 279
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.072 Score=60.09 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=79.5
Q ss_pred CCcccchhhHHHHHHhhh---hcC-------CCeEEEEEEccCCchhhHHHHHHHHHhcccC---cceEEEeeccccccc
Q 004772 386 SGFVGLNSRIEKIKSLLC---LEL-------GDVRIVGIWGMGGIGKTTIASVIFHQISGDF---QGKCFMKNVGEESSK 452 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~~~~~~~~~~~~~~~ 452 (731)
.+..|.++..+++.+.+. ... .-++-+.++|++|.|||.||++++-...--| .+..|+.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe-------- 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-------- 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh--------
Confidence 446787766666655443 211 1256789999999999999999987644333 1111111
Q ss_pred ccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhc---CCCCC
Q 004772 453 MGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCL---DLFSP 514 (731)
Q Consensus 453 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~---~~~~~ 514 (731)
++ .........+...+..++-++++++|.++... ..+.+++ ..++.
T Consensus 222 ---------mf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 222 ---------MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred ---------hh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 00 01111123445555666779999999886543 1222222 23332
Q ss_pred C-CEEEE--EeCChhh----hhhcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 515 G-SRIII--TTRDKRL----LYKRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 515 g-s~IIi--TTR~~~v----~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
+ .-|++ |.|..-+ +..-.....+.++..+...-.+++.-++
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 2 22333 4554322 2222344566677777677777777555
No 280
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.29 Score=48.58 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHhhhhc-----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 386 SGFVGLNSRIEKIKSLLCLE-----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.+.=|.++.+++|.+.+... -..+.-+..+|++|.|||-+|++.+.+....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 45667888888887765421 12356688999999999999999988755444
No 281
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.41 E-value=0.018 Score=59.29 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcccCcc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQG 439 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 439 (731)
.+..++.|.|.+|.|||||+..+...+......
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 347899999999999999999999988766533
No 282
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.41 E-value=0.0094 Score=52.22 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=21.9
Q ss_pred EEEEccCCchhhHHHHHHHHHhcccC
Q 004772 412 VGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
|.|+|++|+|||+||..++..+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988765543
No 283
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.055 Score=55.59 Aligned_cols=45 Identities=27% Similarity=0.240 Sum_probs=35.9
Q ss_pred HhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 400 SLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 400 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+|-.+-...+++=|+|+.|+||||||.+++-.....-..++|++
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 344334445789999999999999999999987777667888987
No 284
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.38 E-value=0.28 Score=55.61 Aligned_cols=47 Identities=26% Similarity=0.395 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..++|....+.++.+.+..-......|.|.|..|+||+.+|+.+.+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 45899999999998887643333457889999999999999999764
No 285
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.33 E-value=0.052 Score=56.07 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+.+++.++|++|+||||++..++..+...-..+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999987765544444443
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.32 E-value=0.055 Score=56.34 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=28.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc-C-cceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD-F-QGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~ 444 (731)
..++++|+|++|+||||++..++..+... . ..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35799999999999999999999876543 2 3445554
No 287
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.32 E-value=0.024 Score=51.37 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=30.2
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 393 SRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 393 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
++..++-+.|...-....++.|.|.-|.|||||++.++..+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 344555555543323345899999999999999999998753
No 288
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.023 Score=53.18 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=30.1
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
...+|.++|++|.||||||.++...+......+..+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999999987776555444
No 289
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.30 E-value=0.028 Score=63.34 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+..|.+.|..+-....++.|.|++|+|||||+.+++.....+-..+.++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566666544445678999999999999999999988766666667765
No 290
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.29 E-value=0.026 Score=56.93 Aligned_cols=32 Identities=34% Similarity=0.359 Sum_probs=27.2
Q ss_pred CCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 406 LGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 406 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.+.+.+++|.|++|.|||||++.++..+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 34588999999999999999999998776543
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.28 E-value=0.068 Score=51.51 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=60.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhh---hcC------------Cccc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQV---MGE------------NIKI 473 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l---~~~------------~~~~ 473 (731)
..+++|.|+.|.|||||++.++-.... ..+.+++... .+......+-... ... ....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-------~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-------PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-------EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 347999999999999999998765332 2334444311 0000000010000 000 0000
Q ss_pred CCCC-cHHHHHHHHcCCCcEEEEeccCCch-----hHhhhhcCCCCCCCEEEEEeCChhhhhhcCCceEEEc
Q 004772 474 GTPT-ITPNIKKRLQQRKVLIVLHDVDDNS-----KSFAVCLDLFSPGSRIIITTRDKRLLYKRGVQSVCEV 539 (731)
Q Consensus 474 ~~~~-~~~~l~~~L~~k~~LLVLDdv~~~~-----~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 539 (731)
+..+ ..-.+.+.+-.++=+++||+..... +.+...+.....+..||++|.+...... ....+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1111 1223455566778899999874432 2222222222346778888888766542 3444443
No 292
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.24 E-value=0.015 Score=55.64 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...|.|+|++|+||||+|+.++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45889999999999999999999874
No 293
>PRK04040 adenylate kinase; Provisional
Probab=95.22 E-value=0.018 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=23.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|+|++|+||||+++.++..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999998874
No 294
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.21 E-value=0.047 Score=56.20 Aligned_cols=45 Identities=22% Similarity=0.153 Sum_probs=36.9
Q ss_pred HhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 400 SLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 400 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+.|..+-...+++.|+|.+|+|||+++.+++.+.......+.|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 334333345779999999999999999999998888888888887
No 295
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.072 Score=56.81 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=29.1
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++++|+|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3679999999999999999999987654444455554
No 296
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.20 E-value=0.077 Score=49.18 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=53.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCC-cHHHHHHHHc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPT-ITPNIKKRLQ 487 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~ 487 (731)
..+++|.|+.|.|||||++.++-.... ..+.+++.......--.. .+..+ ..-.+.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHh
Confidence 458899999999999999998754322 234444431100000000 11111 1223455566
Q ss_pred CCCcEEEEeccCCch-----hHhhhhcCCCCCCCEEEEEeCChhhhh
Q 004772 488 QRKVLIVLHDVDDNS-----KSFAVCLDLFSPGSRIIITTRDKRLLY 529 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~-----~~l~~~~~~~~~gs~IIiTTR~~~v~~ 529 (731)
.++=++++|+-.... ..+...+... +..||++|.+.....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 677799999874322 2222222222 346888888765543
No 297
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.19 E-value=0.23 Score=45.82 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=32.0
Q ss_pred HHHHHHhhhceEEEEEecCCCCCChhhHHHHHHHHHHHhhcCCCEEEEEEEeec
Q 004772 258 PAVSDAIETSLILIVIFSKDYASSKWCLDELVKILDCLIKNTGQIVVPVFYRID 311 (731)
Q Consensus 258 ~~i~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~~~~~~~~~~vlPv~~~vd 311 (731)
.++.+++++++++|+|++.....+.+.. ++...+... . .+..++.|+-+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~-~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEV-D-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhc-c-CCCcEEEEEechh
Confidence 4678899999999999997665554422 444444322 1 3455666655544
No 298
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.1 Score=49.96 Aligned_cols=125 Identities=14% Similarity=0.219 Sum_probs=61.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcc---------cCCCC-c
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIK---------IGTPT-I 478 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---------~~~~~-~ 478 (731)
..+++|.|+.|.|||||.+.++-.... ..+.+++.... .. ....... ...+..+.....- .+..+ .
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~-~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LR-DLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hh-hcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 458899999999999999999865432 24444443211 00 0000000 0000000000000 00001 1
Q ss_pred HHHHHHHHcCCCcEEEEeccCCch-----hHhhhhcCCCCCCCEEEEEeCChhhhhhcCCceEEEc
Q 004772 479 TPNIKKRLQQRKVLIVLHDVDDNS-----KSFAVCLDLFSPGSRIIITTRDKRLLYKRGVQSVCEV 539 (731)
Q Consensus 479 ~~~l~~~L~~k~~LLVLDdv~~~~-----~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 539 (731)
.-.+.+.+..++-+++||+-.... ..+...+.....+..||++|.+...... ...++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 123455566778899999874322 2222222222335678888888766543 4444444
No 299
>PRK15115 response regulator GlrR; Provisional
Probab=95.18 E-value=1.4 Score=49.27 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=34.1
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.++|....+.++.+....-......+.|.|.+|+|||+||+.+.+..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 47888877777766554333334467799999999999999887643
No 300
>PRK03839 putative kinase; Provisional
Probab=95.18 E-value=0.016 Score=56.03 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=21.7
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 301
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.025 Score=55.39 Aligned_cols=29 Identities=41% Similarity=0.554 Sum_probs=26.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.+.+|+|.|.+|+||||+|+.++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46899999999999999999999988755
No 302
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.11 E-value=0.028 Score=54.08 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=27.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
..+++|+|++|+||||+|+.++..+........++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999998875433234444
No 303
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.10 E-value=0.035 Score=56.90 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|.++|..+-....+.=|+|++|+|||+||.+++-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 4555554332234588999999999999999988653
No 304
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.09 E-value=0.022 Score=56.50 Aligned_cols=27 Identities=44% Similarity=0.625 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+|+|+|++|+||||||+.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999987754
No 305
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.07 E-value=0.14 Score=52.83 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=56.5
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCccc
Q 004772 394 RIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKI 473 (731)
Q Consensus 394 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 473 (731)
.++.|..++. . ...++.|.|+.|+||||++..+...+...-..++.+.+..+.. +.. + .+.. ....
T Consensus 68 ~~~~l~~~~~-~--~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~~----~-~q~~--v~~~ 133 (264)
T cd01129 68 NLEIFRKLLE-K--PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IPG----I-NQVQ--VNEK 133 (264)
T ss_pred HHHHHHHHHh-c--CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CCC----c-eEEE--eCCc
Confidence 3444545543 2 2458999999999999999998877654222334443221111 100 0 0100 0011
Q ss_pred CCCCcHHHHHHHHcCCCcEEEEeccCCch
Q 004772 474 GTPTITPNIKKRLQQRKVLIVLHDVDDNS 502 (731)
Q Consensus 474 ~~~~~~~~l~~~L~~k~~LLVLDdv~~~~ 502 (731)
........++..|+..+=.++++++.+..
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR~~e 162 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIRDAE 162 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCCCHH
Confidence 11236778888999999999999998865
No 306
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.13 Score=50.67 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=26.5
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
+.++-|.++|++|.|||.||+++++.....|
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 4477889999999999999999998866555
No 307
>PRK06547 hypothetical protein; Provisional
Probab=95.04 E-value=0.021 Score=54.62 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=24.1
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
....+|+|.|++|+||||||..++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998874
No 308
>PRK10867 signal recognition particle protein; Provisional
Probab=95.02 E-value=0.098 Score=57.48 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.+.+|.++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999998877655
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.99 E-value=0.066 Score=54.27 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=35.6
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.|-++|..+-....++.|.|++|+|||+||.+++......-..+.|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444555444445678999999999999999998876545566777776
No 310
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.99 E-value=0.042 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
++.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998765
No 311
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.98 E-value=0.043 Score=54.61 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999999874
No 312
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.96 E-value=0.037 Score=56.28 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=37.0
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
-.+|...+....+...+|+|+|.||+|||||..++..++..+-..+..+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 3455556655666788999999999999999999998876665444333
No 313
>PRK00625 shikimate kinase; Provisional
Probab=94.96 E-value=0.02 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998864
No 314
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.94 E-value=0.021 Score=55.48 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.++|+|.|++|+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 315
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.94 E-value=0.021 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.5
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
++|.++|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 316
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.93 E-value=0.028 Score=54.31 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=22.8
Q ss_pred EEEEEccCCchhhHHHHHHHHHhccc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+|+|.|.+|+||||||..++..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887543
No 317
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.91 E-value=0.084 Score=53.33 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=65.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccc-ccccccHHHHHHHHHHhhhcC-------CcccCCCC-cH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGE-ESSKMGVIHVRDEVISQVMGE-------NIKIGTPT-IT 479 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~l~~~ll~~l~~~-------~~~~~~~~-~~ 479 (731)
..+++|+|.+|+|||||++.+..-..... +.+++....- .-..........+++..++.. +-..+..+ ..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 45899999999999999999987655433 3333331100 000122333344455443321 11122222 33
Q ss_pred HHHHHHHcCCCcEEEEeccCCchh-----HhhhhcCC--CCCCCEEEEEeCChhhhhhc
Q 004772 480 PNIKKRLQQRKVLIVLHDVDDNSK-----SFAVCLDL--FSPGSRIIITTRDKRLLYKR 531 (731)
Q Consensus 480 ~~l~~~L~~k~~LLVLDdv~~~~~-----~l~~~~~~--~~~gs~IIiTTR~~~v~~~~ 531 (731)
-.+.+.|.-++-|+|.|..-...+ ....++.. ...|...+.-|.+-.+...+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 356778888999999998744331 11111111 12356677777766555543
No 318
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.88 E-value=0.086 Score=55.73 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=28.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
...+++++|++|+||||++..++..+...-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 467999999999999999999998876553333333
No 319
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.16 Score=59.92 Aligned_cols=104 Identities=13% Similarity=0.246 Sum_probs=66.7
Q ss_pred CcccchhhHHHHHHhhhhc---C-C--CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHH
Q 004772 387 GFVGLNSRIEKIKSLLCLE---L-G--DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~---~-~--~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 460 (731)
..+|.+.-+..+.+.+... . + ....+.+.|+.|+|||-||++++.-+.+..+.-+-+. +.+...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhhh
Confidence 4567777777776666421 1 1 3567788999999999999999998765554434333 222222
Q ss_pred HHHHhhhcCCcccCCCCcHHHHHHHHcCCCc-EEEEeccCCch
Q 004772 461 EVISQVMGENIKIGTPTITPNIKKRLQQRKV-LIVLHDVDDNS 502 (731)
Q Consensus 461 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~-LLVLDdv~~~~ 502 (731)
.+.+.+.++..-..+....|...++.+++ +|.||||+...
T Consensus 633 --vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred --hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 33333333333334455678888888765 77799998876
No 320
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.82 E-value=0.2 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999998853
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.81 E-value=0.082 Score=51.05 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=60.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc-ccccH---HHHHHHHHHhhhcCC---cc---cCCCC-
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES-SKMGV---IHVRDEVISQVMGEN---IK---IGTPT- 477 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~---~~l~~~ll~~l~~~~---~~---~~~~~- 477 (731)
..+++|.|+.|.|||||++.++-.... ..+.+++....-.. ..... .....+++..++-.. .. .+..+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 458999999999999999998765432 34445543211000 00000 111111333322111 01 11111
Q ss_pred cHHHHHHHHcCCCcEEEEeccCCch-----hHhhhhcCCC-CC-CCEEEEEeCChhhh
Q 004772 478 ITPNIKKRLQQRKVLIVLHDVDDNS-----KSFAVCLDLF-SP-GSRIIITTRDKRLL 528 (731)
Q Consensus 478 ~~~~l~~~L~~k~~LLVLDdv~~~~-----~~l~~~~~~~-~~-gs~IIiTTR~~~v~ 528 (731)
..-.+.+.+-..+-++++|+--... +.+...+... .. +..||++|.+....
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2223556666788899999874322 2222222222 22 66788888876554
No 322
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.81 E-value=0.039 Score=54.28 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...+++|+|++|+||||||+.+...+.......+++.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4679999999999999999999987754433445553
No 323
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.80 E-value=0.054 Score=50.61 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=18.5
Q ss_pred EEccCCchhhHHHHHHHHHh
Q 004772 414 IWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 414 I~G~gGiGKTtLA~~~~~~~ 433 (731)
|.|++|+||||+|..++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 324
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.023 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.3
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+|.|.|++|+||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6889999999999999999988643
No 325
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.75 E-value=0.04 Score=56.63 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=30.1
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...++.|.|++|+|||+||.+++......-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3568999999999999999999876554556777776
No 326
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=94.74 E-value=0.083 Score=47.33 Aligned_cols=61 Identities=21% Similarity=0.393 Sum_probs=51.7
Q ss_pred eEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccC
Q 004772 18 DVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSEN 82 (731)
Q Consensus 18 dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~ 82 (731)
.|||.|+ .|. .....+...|+..|+.+.+-.+ ....|..+.+.+.+...+|+.+||+++|+
T Consensus 1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~-~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHE-QPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeec-CCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899997 554 5788899999988988776554 45889999999999999999999999995
No 327
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.73 E-value=0.13 Score=56.63 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=27.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc--ccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS--GDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 444 (731)
.+++.++|++|+||||++..++.... .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45899999999999999999987765 3334455554
No 328
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.72 E-value=0.14 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|.|+.|.|||||++.++-..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4588999999999999999998644
No 329
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.58 Score=53.61 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=57.0
Q ss_pred CCcccchhhHHHHHHhhhh----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccH
Q 004772 386 SGFVGLNSRIEKIKSLLCL----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGV 455 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 455 (731)
++.=|.++-..+|.+-+.. +.....=|.++|++|.|||-||++++.+..-.| ++. -.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSV----KG---- 738 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSV----KG---- 738 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Eee----cC----
Confidence 4556777767777665432 111233578999999999999999998865444 331 11
Q ss_pred HHHHHHHHHh-hhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch
Q 004772 456 IHVRDEVISQ-VMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS 502 (731)
Q Consensus 456 ~~l~~~ll~~-l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~ 502 (731)
. +++.. .++ +.....+...+.-.-++|+|.+|.++...
T Consensus 739 P----ELLNMYVGq-----SE~NVR~VFerAR~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 739 P----ELLNMYVGQ-----SEENVREVFERARSAAPCVIFFDELDSLA 777 (953)
T ss_pred H----HHHHHHhcc-----hHHHHHHHHHHhhccCCeEEEeccccccC
Confidence 1 12222 111 11124444444445689999999997654
No 330
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.70 E-value=0.12 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+++.++|+.|+||||.+..++..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988765
No 331
>PRK05439 pantothenate kinase; Provisional
Probab=94.68 E-value=0.041 Score=57.54 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=25.5
Q ss_pred CCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 406 LGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 406 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.+.+.+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999886653
No 332
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.65 E-value=0.022 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+|.|+|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998875
No 333
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.64 E-value=0.28 Score=61.80 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=23.8
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..++-|.++|++|.|||.||+++|....
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 3466788999999999999999998743
No 334
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.61 E-value=0.26 Score=54.23 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+.++.++|++|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988764
No 335
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.61 E-value=0.14 Score=54.75 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=26.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc--ccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS--GDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 444 (731)
.+++.++|+.|+||||-...++.++. ..-..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 78999999999999976666666654 3334555554
No 336
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.60 E-value=0.077 Score=50.34 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=58.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCC-cHHHHHHHHc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPT-ITPNIKKRLQ 487 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~ 487 (731)
..+++|.|+.|.|||||.+.++-... ...+.+++.... .. ......... ...+. ....+..+ ..-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS-FASPRDARR---AGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC-cCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHh
Confidence 34899999999999999998875433 234445543211 00 011111100 01110 00011111 2233555666
Q ss_pred CCCcEEEEeccCCch-----hHhhhhcC-CCCCCCEEEEEeCChhhhh
Q 004772 488 QRKVLIVLHDVDDNS-----KSFAVCLD-LFSPGSRIIITTRDKRLLY 529 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~-----~~l~~~~~-~~~~gs~IIiTTR~~~v~~ 529 (731)
.++=++++|+--... ..+...+. ....+..||++|.+...+.
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 778899999874322 22222222 2234677889998875443
No 337
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.60 E-value=0.12 Score=57.64 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..+++|+|++|+||||++..++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999998776543
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.59 E-value=0.16 Score=48.84 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=54.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeec--ccccccccHHHHHHHHHHhhhcCCcccCCCC-cHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNV--GEESSKMGVIHVRDEVISQVMGENIKIGTPT-ITPNIKKR 485 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~ 485 (731)
..+++|.|+.|.|||||++.++-.... ..+.+.+... ....+... .+..+ ..-.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHH
Confidence 348999999999999999988764432 2333333210 00000000 01111 22234555
Q ss_pred HcCCCcEEEEeccCCch-----hHhhhhcC-CCCC-CCEEEEEeCChhhhh
Q 004772 486 LQQRKVLIVLHDVDDNS-----KSFAVCLD-LFSP-GSRIIITTRDKRLLY 529 (731)
Q Consensus 486 L~~k~~LLVLDdv~~~~-----~~l~~~~~-~~~~-gs~IIiTTR~~~v~~ 529 (731)
+..++-+++||+--... ..+...+. .... +..||++|.+.....
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 66778899999874322 11222221 1122 367888888765544
No 339
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.57 E-value=0.14 Score=59.06 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=58.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC---cceEEEeecccccccccHHHHHHHHHHhhhcCCcc----cCCCCcHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF---QGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIK----IGTPTITPN 481 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~----~~~~~~~~~ 481 (731)
.++..|+|.+|.||||++..+...+.... ...+.+. .........+.+.+-..+...... .........
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~----APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~T 242 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLA----APTGKAAARLTESLGKALRQLPLTDEQKKRIPEEAST 242 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEE----CCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHH
Confidence 45888999999999999999887654322 1233333 222222333333222111100000 000012233
Q ss_pred HHHHHcC------------CC---cEEEEeccCCch-hHhhhhcCCCCCCCEEEEEeCC
Q 004772 482 IKKRLQQ------------RK---VLIVLHDVDDNS-KSFAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 482 l~~~L~~------------k~---~LLVLDdv~~~~-~~l~~~~~~~~~gs~IIiTTR~ 524 (731)
+.+.|.. .+ -+||+|.+...+ .....++...++++|+|+---.
T Consensus 243 iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 243 LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred HHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEecch
Confidence 4444421 11 389999997766 3334445556778888876543
No 340
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.55 E-value=0.082 Score=56.83 Aligned_cols=101 Identities=16% Similarity=0.294 Sum_probs=56.8
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
.++=+-|||..|.|||.|.-.+|+.+...-.. ..........+-+.+.... ...+....+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~------------R~HFh~Fm~~vh~~l~~~~---~~~~~l~~va~~l~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR------------RVHFHEFMLDVHSRLHQLR---GQDDPLPQVADELA 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc------------cccccHHHHHHHHHHHHHh---CCCccHHHHHHHHH
Confidence 35667899999999999999999876432111 1112222222222221111 22234556667778
Q ss_pred CCCcEEEEeccCCch--h--HhhhhcC-CCCCCCEEEEEeC
Q 004772 488 QRKVLIVLHDVDDNS--K--SFAVCLD-LFSPGSRIIITTR 523 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~--~--~l~~~~~-~~~~gs~IIiTTR 523 (731)
++..||+||.+.-.+ + .+..++. .+..|..+|.||-
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 888899999984443 2 1222332 3355665555553
No 341
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.54 E-value=0.14 Score=48.87 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=44.3
Q ss_pred EEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC--C
Q 004772 412 VGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ--R 489 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~--k 489 (731)
+.|.|.+|+|||++|.+++.. ......++. ..... -.+..+.+..............+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~-d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAF-DDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcC-CHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 679999999999999999866 223455554 22222 2233334333322233333333444445555532 3
Q ss_pred CcEEEEecc
Q 004772 490 KVLIVLHDV 498 (731)
Q Consensus 490 ~~LLVLDdv 498 (731)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 447899987
No 342
>PRK13947 shikimate kinase; Provisional
Probab=94.54 E-value=0.028 Score=53.76 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.0
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.|.|+|++|+||||+|+.+++++.-.|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 378999999999999999999875433
No 343
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.54 E-value=0.16 Score=55.49 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
.+.+|.++|++|+||||++..++..++.+...+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999998766543334444
No 344
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=94.53 E-value=0.065 Score=47.99 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=51.0
Q ss_pred eEEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCC
Q 004772 213 DVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKD 277 (731)
Q Consensus 213 dvFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~ 277 (731)
.|||.|+ .| ...+..+...|+..|+.+.+-.+. ...|..+.+.+.+.+.+|+.+|+|++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~-~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQ-PNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecC-CCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899987 55 357889999999888886665555 6789999999999999999999999984
No 345
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.52 E-value=0.33 Score=46.11 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.++..|+|..|+|||||...++..
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhh
Confidence 568889999999999999998753
No 346
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.51 E-value=0.13 Score=50.63 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=26.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccCcceEEEeec
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNV 446 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 446 (731)
.|+|+|-||+||||+|..++.++...-...+.+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 589999999999999999777765553334444433
No 347
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.50 E-value=0.055 Score=51.53 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..++++|+|..|+|||||++.+...+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887653
No 348
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.49 E-value=0.052 Score=50.03 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=26.5
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
++|.|+|..|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999988754 44444444
No 349
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.48 E-value=0.12 Score=49.55 Aligned_cols=125 Identities=15% Similarity=0.227 Sum_probs=61.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcc---------cCCCC-c
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIK---------IGTPT-I 478 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---------~~~~~-~ 478 (731)
..+++|.|+.|.|||||.+.++-.... ..+.+++.... .. ..........+ ........- .+..+ .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGAD-IS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEE-cc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHH
Confidence 348999999999999999999865432 23444443211 00 00111111110 000110000 01111 1
Q ss_pred HHHHHHHHcCCCcEEEEeccCCch-----hHhhhhcC-CCCCCCEEEEEeCChhhhhhcCCceEEEc
Q 004772 479 TPNIKKRLQQRKVLIVLHDVDDNS-----KSFAVCLD-LFSPGSRIIITTRDKRLLYKRGVQSVCEV 539 (731)
Q Consensus 479 ~~~l~~~L~~k~~LLVLDdv~~~~-----~~l~~~~~-~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 539 (731)
.-.+.+.+-.++=+++||+--... ..+...+. ....|..||++|.+..... . ...++.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 223445566677799999874332 22222222 2234677888888776553 2 3444444
No 350
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.47 E-value=0.029 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEccCCchhhHHHHHHHHHhcc
Q 004772 412 VGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999988754
No 351
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.18 Score=48.39 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=58.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcc-----------cCCCC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIK-----------IGTPT 477 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-----------~~~~~ 477 (731)
..+++|.|+.|.|||||++.++-.... ..+.+++.... ... .. ...... +.-+.....- .+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~~-~~-~~~~~~-i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKD-IKK-EP-EEVKRR-IGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-ccc-ch-Hhhhcc-EEEEecCCccccCCcHHHHhhcCHHH
Confidence 458999999999999999998764322 23444443211 000 00 000000 0000000000 00011
Q ss_pred -cHHHHHHHHcCCCcEEEEeccCCch-----hHhhhhcCC-CCCCCEEEEEeCChhhhh
Q 004772 478 -ITPNIKKRLQQRKVLIVLHDVDDNS-----KSFAVCLDL-FSPGSRIIITTRDKRLLY 529 (731)
Q Consensus 478 -~~~~l~~~L~~k~~LLVLDdv~~~~-----~~l~~~~~~-~~~gs~IIiTTR~~~v~~ 529 (731)
..-.+.+.+..++=++++|+--... ..+...+.. ...|..+|++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1223556666788899999874432 222222222 233677889988876544
No 352
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.42 E-value=0.098 Score=56.53 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=38.5
Q ss_pred CCcccchhhHHHHHHhhhhc------------CCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 386 SGFVGLNSRIEKIKSLLCLE------------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..++|.++..+.+.-.+... ...++-|.++|++|+|||+||+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35788888877776555421 11246788999999999999999999876554
No 353
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.42 E-value=0.081 Score=56.04 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=31.0
Q ss_pred HHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 396 EKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 396 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.+|.+.+....+...+|+|+|.+|+|||||+..+...+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443334557899999999999999999998877654
No 354
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.40 E-value=0.085 Score=56.16 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc--c---c-CcceEEEe
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS--G---D-FQGKCFMK 444 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~---~-f~~~~~~~ 444 (731)
|-++|..+-....++-|+|++|+|||+|+.+++-... . . -..++|++
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 4445543434467888999999999999999874332 1 1 24567776
No 355
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.39 E-value=0.094 Score=52.98 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc------CcceEEEe
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD------FQGKCFMK 444 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 444 (731)
|..+|..+-....++.|+|.+|+|||+||.+++...... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 334444333346789999999999999999998654322 25677776
No 356
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.37 E-value=0.028 Score=54.41 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.1
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 357
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.35 E-value=0.089 Score=50.74 Aligned_cols=116 Identities=14% Similarity=0.039 Sum_probs=64.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH--HHh--hhcC--CcccCCCC-----
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV--ISQ--VMGE--NIKIGTPT----- 477 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l--l~~--l~~~--~~~~~~~~----- 477 (731)
...|.|+|..|-||||.|..++.+...+-..+.++.-.... ...+-...+..+ +.- .+.. ....+..+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 46788999999999999999998876665555444432222 112222222221 000 1110 00000000
Q ss_pred --cHHHHHHHHcCC-CcEEEEeccCCch-------hHhhhhcCCCCCCCEEEEEeCCh
Q 004772 478 --ITPNIKKRLQQR-KVLIVLHDVDDNS-------KSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 478 --~~~~l~~~L~~k-~~LLVLDdv~~~~-------~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
.....++.+... -=|||||.+-... +.+...+..-+++..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122334444444 4599999984332 44555555566788999999975
No 358
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.32 E-value=0.19 Score=52.07 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=28.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
..++.|.|.+|+|||+|+.+++.....+ -..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4588899999999999999998876544 45667765
No 359
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.32 E-value=0.032 Score=51.66 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+|.|+|++|+||||+|+.++.++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 360
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.30 E-value=0.029 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998873
No 361
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.30 E-value=0.054 Score=54.45 Aligned_cols=47 Identities=23% Similarity=0.173 Sum_probs=32.7
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
|.++|..+-....++.|.|++|+|||+|+.+++.....+ -+.++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 444443332335689999999999999999998766555 56777776
No 362
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.30 E-value=0.14 Score=55.20 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh--cccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI--SGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~~~~ 444 (731)
.++.|.|.+|.|||.||..++.++ ........++.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 478999999999999999999998 55566666665
No 363
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.29 E-value=0.029 Score=56.05 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=22.3
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999987753
No 364
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.27 E-value=0.031 Score=54.95 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.0
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+|+|.|++|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998776
No 365
>PRK05973 replicative DNA helicase; Provisional
Probab=94.26 E-value=0.11 Score=52.23 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=28.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++.|.|.+|+|||+||.+++.....+...+.|+.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458899999999999999999877655555566665
No 366
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.26 E-value=0.37 Score=48.83 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987654
No 367
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.036 Score=53.65 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=23.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|-||-|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 368
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.17 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999754
No 369
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.26 E-value=0.17 Score=58.19 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.++..|.|.+|.||||++..+...+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 358889999999999999998876543
No 370
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.24 E-value=0.33 Score=58.50 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=93.8
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccC----cceEEEeecccccccccHH--HHHHHHHHhhhcCCcccCCCCcHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDF----QGKCFMKNVGEESSKMGVI--HVRDEVISQVMGENIKIGTPTITPNIKK 484 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~--~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 484 (731)
-+.|+|.+|.||||+...++-...... +..+++............. .+..-+...+... ...........+
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~---~~~~~~~~~~~e 300 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ---GIAKQLIEAHQE 300 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc---CCcchhhHHHHH
Confidence 578999999999999999986543332 2223332110000000000 1111111111111 011112223357
Q ss_pred HHcCCCcEEEEeccCCch--------hHhhhhcCCCCCCCEEEEEeCChhhhhhcCCceEEEcCCCCHHHHHHHHHHh--
Q 004772 485 RLQQRKVLIVLHDVDDNS--------KSFAVCLDLFSPGSRIIITTRDKRLLYKRGVQSVCEVKGLKHNSALELFCRK-- 554 (731)
Q Consensus 485 ~L~~k~~LLVLDdv~~~~--------~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~-- 554 (731)
++...++|+.+|.++... ..+....+. -+..++|+|+|....-........+++..+.++.-.......
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~ 379 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWL 379 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHH
Confidence 888999999999997765 112222222 347789999986543322222334455555554433332211
Q ss_pred ------hhcCCCCCh---hHHH---HHHHHHHHhCCChHHHHHHHHHhc------CCCHHHHHHHHHHhc
Q 004772 555 ------AFRQNNRSP---DLLE---LSEEVAHYANGNPLALQVLGSSLY------QKSKEQWKDKLHKLK 606 (731)
Q Consensus 555 ------~~~~~~~~~---~~~~---~~~~i~~~~~GlPLal~~~~~~L~------~~~~~~w~~~l~~l~ 606 (731)
.++. .... .... -..+-.+.....|+.|.+.+..-. ....+-++..++.+-
T Consensus 380 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 380 DAFIEDWFGD-SRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHhhhcc-cchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 1111 1111 0011 122334555889999999885443 123455666666543
No 371
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.23 E-value=0.2 Score=47.67 Aligned_cols=55 Identities=11% Similarity=0.250 Sum_probs=35.8
Q ss_pred cHHHHHHHHcCCCcEEEEecc----CCch--hHhhhhcCCCCCCCEEEEEeCChhhhhhcC
Q 004772 478 ITPNIKKRLQQRKVLIVLHDV----DDNS--KSFAVCLDLFSPGSRIIITTRDKRLLYKRG 532 (731)
Q Consensus 478 ~~~~l~~~L~~k~~LLVLDdv----~~~~--~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~ 532 (731)
..-.+.+.+-+++-||+-|.- +... +.+..+......|..||++|.+..+...+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334567777889999999854 2222 222223333456899999999988766653
No 372
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.22 E-value=0.11 Score=58.82 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..++|....++++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999998887643333456889999999999999999875
No 373
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.19 E-value=0.078 Score=53.42 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=33.9
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.|.+.|..+-....++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444333334678999999999999999998765444455677776
No 374
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.19 E-value=0.14 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEccCCchhhHHHHHHHHHh
Q 004772 412 VGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~ 433 (731)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 375
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.17 E-value=0.038 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988754
No 376
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.16 E-value=0.8 Score=51.45 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=36.3
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++|....+.++.+.+.........+.|.|..|+||+++|+.+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 348888888888877765433334567899999999999998887653
No 377
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.074 Score=54.24 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
+..++|||++|.|||-||+.++..+.-.|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 66899999999999999999999876555
No 378
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.13 E-value=0.067 Score=63.39 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.++++|+|+.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 468999999999999999988643
No 379
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.13 E-value=0.11 Score=53.91 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=69.1
Q ss_pred CCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHH
Q 004772 385 LSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVIS 464 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~ 464 (731)
.+.+.-.....+++.++|...-...+.+.|+|..|+||||++..+...+...-...+-+.+..+.. +.. ..
T Consensus 103 le~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~----l~~-----~~ 173 (270)
T PF00437_consen 103 LEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR----LPG-----PN 173 (270)
T ss_dssp HCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S------SC-----SS
T ss_pred HhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee----ecc-----cc
Confidence 344554455556666666543233578999999999999999999887665522333333211111 100 00
Q ss_pred hhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchhHhhhhcCCCCCCCEE-EEEeC
Q 004772 465 QVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKSFAVCLDLFSPGSRI-IITTR 523 (731)
Q Consensus 465 ~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l~~~~~~~~~gs~I-IiTTR 523 (731)
...... ..+.....+.+...|+..+=.++++.+.+.+.. .. ......|..+ +-|..
T Consensus 174 ~~~~~~-~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~-~~-~~a~~tGh~~~~tT~H 230 (270)
T PF00437_consen 174 QIQIQT-RRDEISYEDLLKSALRQDPDVIIIGEIRDPEAA-EA-IQAANTGHLGSLTTLH 230 (270)
T ss_dssp EEEEEE-ETTTBSHHHHHHHHTTS--SEEEESCE-SCHHH-HH-HHHHHTT-EEEEEEEE
T ss_pred eEEEEe-ecCcccHHHHHHHHhcCCCCcccccccCCHhHH-HH-HHhhccCCceeeeeee
Confidence 000000 022334778888999999999999999876522 22 2233456566 45544
No 380
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.13 E-value=0.22 Score=51.29 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=58.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCC-----cccCCCCcHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGEN-----IKIGTPTITPNIK 483 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-----~~~~~~~~~~~l~ 483 (731)
..-++|.|+.|.|||||.+.++..+... .+.+++.... ........++.. ....+.... ...+.......+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~~d~~~ei~~-~~~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGIVDERSEIAG-CVNGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eecchhHHHHHH-HhcccccccccccccccccchHHHHHH
Confidence 5678999999999999999998776543 3333432100 100001111111 111111111 0111111122233
Q ss_pred HHHc-CCCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhh
Q 004772 484 KRLQ-QRKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRL 527 (731)
Q Consensus 484 ~~L~-~k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v 527 (731)
..+. ..+=++++|.+..... +.........|..+|+||.+..+
T Consensus 188 ~~i~~~~P~villDE~~~~e~-~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGREED-VEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHhCCCCEEEEeCCCcHHH-HHHHHHHHhCCCEEEEEechhHH
Confidence 3333 5788999999865442 22222222357889999986544
No 381
>PRK15453 phosphoribulokinase; Provisional
Probab=94.11 E-value=0.067 Score=54.71 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
....+|+|.|.+|+||||+|+.+++.+...-...+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 34679999999999999999999976654322334443
No 382
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.04 E-value=0.042 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEccCCchhhHHHHHHHHHhc
Q 004772 412 VGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
|.|+|++|+||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999998763
No 383
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.03 E-value=0.072 Score=57.56 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCcccchhhHHHHHHhhhhc--------C----CCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 386 SGFVGLNSRIEKIKSLLCLE--------L----GDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..++|.+...+.+..++... . ...+.+.++|++|+|||+||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 35789988888887776431 0 1146789999999999999999998875544
No 384
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.03 E-value=0.068 Score=56.37 Aligned_cols=56 Identities=25% Similarity=0.222 Sum_probs=37.9
Q ss_pred CCCcccchhhHHHH---HHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcce
Q 004772 385 LSGFVGLNSRIEKI---KSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGK 440 (731)
Q Consensus 385 ~~~fvGR~~el~~L---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 440 (731)
...+||..+..+.. .+++..+.-..+.+.|.|++|.|||+||..+++.+..+.+.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 46799998766654 344433332357889999999999999999999988665433
No 385
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.03 E-value=0.082 Score=55.64 Aligned_cols=36 Identities=33% Similarity=0.410 Sum_probs=29.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+++..+|.||+||||+|.+.+-..........-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998887776665554444
No 386
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.01 E-value=0.091 Score=60.57 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=46.7
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEee
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMKN 445 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~ 445 (731)
++.....++|.+..++.|...+... +.+.|+|++|+||||+|+.+++.+... ++...|..+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 4445567899999988888777533 368899999999999999999876433 466677664
No 387
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.01 E-value=0.042 Score=54.41 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=24.8
Q ss_pred hhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 402 LCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 402 L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
+..+....+.+.|+|++|+|||||+..+...
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334455788999999999999999998754
No 388
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.99 E-value=0.088 Score=55.25 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=36.7
Q ss_pred CCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+.++=.......+...|.. .+.|.|.|++|+|||+||+.++..+...|
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 334555555566667766643 23588999999999999999999876544
No 389
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=2.5 Score=43.99 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=41.2
Q ss_pred CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhhc-CCceEEEcCCCCHHHHHHHHHH
Q 004772 488 QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYKR-GVQSVCEVKGLKHNSALELFCR 553 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 553 (731)
+++-++|+||++... ..+...+.-.++++.+|++|.+. .++... .....+.+.+ +.++..+++..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 345689999998876 44555566566667777777654 344432 2335667766 66666666653
No 390
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=93.96 E-value=0.6 Score=52.19 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..++|....++++...+..-......+.|+|..|+||+++|+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 35888888888888777543222344669999999999999998754
No 391
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.93 E-value=0.051 Score=53.24 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++.|+|.+|+||||+|..++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 392
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=1.6 Score=45.29 Aligned_cols=38 Identities=11% Similarity=-0.094 Sum_probs=28.0
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
-++|...+..+. -.+...++|+.|+||+++|.+++..+
T Consensus 6 ~~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 6 WEALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 345555554332 25677899999999999999999875
No 393
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.91 E-value=0.076 Score=55.84 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=43.0
Q ss_pred CCcccchhhHHHHHHhhhhcC----CCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 386 SGFVGLNSRIEKIKSLLCLEL----GDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..|+|.++.+++|.+.+...+ ..-+++.+.|+.|.||||||..+..-+...
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 479999999999999887543 347899999999999999999987766544
No 394
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.89 E-value=0.038 Score=50.75 Aligned_cols=26 Identities=19% Similarity=0.499 Sum_probs=21.9
Q ss_pred EEEEEccCCchhhHHHHHHHHHhccc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+++|+|+.|+|||||++.++......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36899999999999999998875444
No 395
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.89 E-value=0.24 Score=48.21 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.++.|.|++|+|||+++.+++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37889999999999999999876643
No 396
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.89 E-value=0.11 Score=52.47 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...++.|.|++|+||||||.+++.....+-..++++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3458999999999999999888776543445556665
No 397
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.87 E-value=0.075 Score=60.79 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=39.3
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+..+.|.+..+.|.++...-.....+|.|+|++|+||||+|+.++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 44567777777777776544455668999999999999999999998764
No 398
>PRK13949 shikimate kinase; Provisional
Probab=93.87 E-value=0.046 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.8
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
-|.|+|++|.|||||++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998874
No 399
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.85 E-value=0.081 Score=55.69 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=27.6
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+++.+.|-||+||||+|.+.+-.....-..+.-++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 57889999999999999999877766655555554
No 400
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.81 E-value=0.17 Score=47.62 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=58.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCC-cHHHHHHHHcC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPT-ITPNIKKRLQQ 488 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~ 488 (731)
.+++|.|..|.|||||++.++..+.. ..+.+++....- . ...... ....+.--. ..+..+ ..-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~-~-~~~~~~----~~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDI-A-KLPLEE----LRRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEc-c-cCCHHH----HHhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999765432 344455542110 0 000111 111100000 011111 22235555666
Q ss_pred CCcEEEEeccCCch-----hHhhhhcCC-CCCCCEEEEEeCChhhhhh
Q 004772 489 RKVLIVLHDVDDNS-----KSFAVCLDL-FSPGSRIIITTRDKRLLYK 530 (731)
Q Consensus 489 k~~LLVLDdv~~~~-----~~l~~~~~~-~~~gs~IIiTTR~~~v~~~ 530 (731)
.+=+++||+..... ..+...+.. ...+..+|++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 78899999885432 222222221 1235678888887765554
No 401
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.80 E-value=0.07 Score=55.05 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=29.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
++++|+|.+|+|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988877 566665
No 402
>PF13245 AAA_19: Part of AAA domain
Probab=93.79 E-value=0.059 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=18.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++.|.|++|.|||+++.+....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357778999999999666655543
No 403
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.047 Score=51.11 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=18.5
Q ss_pred EEEEEccCCchhhHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~ 430 (731)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 57899999999999999887
No 404
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.74 E-value=0.1 Score=55.14 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=50.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhh-hcCCcccCCCCcHHHHHHHHc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQV-MGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~~~~~~~~~~~~~l~~~L~ 487 (731)
...+.|+|..|+|||||++.+...+.... ..+.+.+..+..... .....-. .............+.+...|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYVHLFYSKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEEEEEecCCCCCcCccCHHHHHHHHhc
Confidence 45889999999999999999887654332 233333222211110 0000000 000011112336677888888
Q ss_pred CCCcEEEEeccCCch
Q 004772 488 QRKVLIVLHDVDDNS 502 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~ 502 (731)
..+=.|++|.+...+
T Consensus 217 ~~pd~ii~gE~r~~e 231 (308)
T TIGR02788 217 MRPDRIILGELRGDE 231 (308)
T ss_pred CCCCeEEEeccCCHH
Confidence 899999999997744
No 405
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.71 E-value=0.11 Score=54.54 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=29.1
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+.+.+....+...+++|+|++|+|||||+..+.......
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 333333333457899999999999999999998866544
No 406
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.71 E-value=0.21 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.8
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
++.|.|.+|+|||++|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 57899999999999999998764
No 407
>PRK13948 shikimate kinase; Provisional
Probab=93.69 E-value=0.051 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..+.|.|+|+.|+||||+++.+++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3578899999999999999999988743
No 408
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.68 E-value=0.063 Score=52.00 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=29.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
.+++.|+|+.|+|||||+..+.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46889999999999999999999988888544433
No 409
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.67 E-value=0.042 Score=52.09 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=19.8
Q ss_pred EEEEccCCchhhHHHHHHHHHh
Q 004772 412 VGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 410
>PRK04328 hypothetical protein; Provisional
Probab=93.63 E-value=0.1 Score=53.32 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.|.++|..+-....++.|.|.+|+|||+||.+++......-..+.|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344445433334678999999999999999998876544556677776
No 411
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.63 E-value=0.072 Score=50.02 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.3
Q ss_pred EEEEEccCCchhhHHHHHHHHHhccc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987665
No 412
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.58 Score=53.60 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=37.4
Q ss_pred cccchhhHHHHHHhhhhcC-------CCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 388 FVGLNSRIEKIKSLLCLEL-------GDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+++..+..+.+.+.... .-..++.++|.+|+||||+++.++..+.-++
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~ 459 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHL 459 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCce
Confidence 3566666667777775321 1256889999999999999999999876653
No 413
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.62 E-value=0.11 Score=59.91 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=41.9
Q ss_pred CCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 385 LSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
...++|.++.++.+...+... +.+.++|++|+|||+||+.+++.+... |...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 356899998888888777533 255699999999999999999887654 34444444
No 414
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.62 E-value=0.083 Score=56.45 Aligned_cols=47 Identities=28% Similarity=0.193 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.++|++..+..+...+..+. .+.+.|++|+|||+||+.++..+...|
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 38898888888776665443 578999999999999999999887555
No 415
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.59 E-value=0.14 Score=55.00 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCc---ceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQ---GKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKR 485 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 485 (731)
...|.|+|+.|+||||+++.+...+....+ .++.+.+.-+ ........ ....................++..
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~-~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIET-ISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eecccccc-ccceeeeeeccccccCHHHHHHHH
Confidence 468999999999999999999887754332 2233321111 11111000 000000111111122366778888
Q ss_pred HcCCCcEEEEeccCCch
Q 004772 486 LQQRKVLIVLHDVDDNS 502 (731)
Q Consensus 486 L~~k~~LLVLDdv~~~~ 502 (731)
|+..+-.+++..+.+..
T Consensus 209 LR~~Pd~i~vGEiRd~e 225 (358)
T TIGR02524 209 LRRKPHAILVGEARDAE 225 (358)
T ss_pred hccCCCEEeeeeeCCHH
Confidence 99999999999887765
No 416
>PRK14530 adenylate kinase; Provisional
Probab=93.59 E-value=0.056 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.2
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|.|.|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 417
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.23 Score=50.20 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=24.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
+.-|.++|.+|.|||-||++++++....|
T Consensus 219 PKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 219 PKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred CCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 55677999999999999999999876655
No 418
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.53 E-value=0.33 Score=43.67 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=24.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc--cCcceEEEe
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG--DFQGKCFMK 444 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~ 444 (731)
.+.|.|+.|.|||+.+..++.+... .....+++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 3679999999999999988876543 334445543
No 419
>PRK13946 shikimate kinase; Provisional
Probab=93.52 E-value=0.056 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+.|.+.|++|+||||+++.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999874
No 420
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.51 E-value=0.11 Score=53.95 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+.+|+|.|..|+||||||+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3478999999999999999988776554
No 421
>PRK13768 GTPase; Provisional
Probab=93.50 E-value=0.094 Score=53.70 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=26.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
.++.|.|+||+||||++..++.........++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 5788999999999999999988776554444444
No 422
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.45 E-value=0.22 Score=52.90 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCcEEEEeccCCchh-----HhhhhcCCC--CCCCEEEEEeCChhhhhhcCCce
Q 004772 479 TPNIKKRLQQRKVLIVLHDVDDNSK-----SFAVCLDLF--SPGSRIIITTRDKRLLYKRGVQS 535 (731)
Q Consensus 479 ~~~l~~~L~~k~~LLVLDdv~~~~~-----~l~~~~~~~--~~gs~IIiTTR~~~v~~~~~~~~ 535 (731)
...|.+.+.+++-+++.|.+....+ -++..+... ..|..+++.|+.+++...+.++.
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 3457788888989999998854331 111111111 24677777777777777665543
No 423
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.44 E-value=0.06 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|.|.|++|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999884
No 424
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.42 E-value=0.14 Score=53.18 Aligned_cols=55 Identities=27% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCCCCcccchhhHHH---HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 383 TDLSGFVGLNSRIEK---IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 383 ~~~~~fvGR~~el~~---L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
...+.|||..+-.+. +.+++..+.-..+.|.|+|++|.|||+||..+++.+...-
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dv 93 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDV 93 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 345679998765544 3455554433467899999999999999999999987553
No 425
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.41 E-value=0.16 Score=50.91 Aligned_cols=36 Identities=39% Similarity=0.371 Sum_probs=23.7
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 394 RIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 394 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+.+...+.. ..+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 34445445431 2278899999999998888877766
No 426
>PLN02200 adenylate kinase family protein
Probab=93.40 E-value=0.07 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=22.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.+|.|.|++|+||||+|+.++...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998765
No 427
>COG4240 Predicted kinase [General function prediction only]
Probab=93.36 E-value=0.21 Score=48.68 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=30.3
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcccC-cceEEEe
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGDF-QGKCFMK 444 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~ 444 (731)
+++-+++|+|+-|+||||++..++..+...+ ......+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS 86 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS 86 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee
Confidence 4578999999999999999999998776665 4444443
No 428
>PRK14527 adenylate kinase; Provisional
Probab=93.34 E-value=0.069 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++.|+|++|+||||+|+.++.+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998775
No 429
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.33 E-value=0.23 Score=49.78 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=33.1
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
|.+.|..+-....++.|.|.+|+|||++|.+++......-..++|+.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444333234678999999999999999999876544445566665
No 430
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.31 E-value=0.093 Score=44.27 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.1
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999988765
No 431
>PRK13975 thymidylate kinase; Provisional
Probab=93.30 E-value=0.074 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.5
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998764
No 432
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.29 E-value=0.068 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+-|.|+|-||+||||||.+++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 457899999999999999998653
No 433
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.28 E-value=0.11 Score=51.43 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+++++++++|..|+|||||..++.+....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45899999999999999999999887543
No 434
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.28 E-value=0.056 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
++++|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998754
No 435
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.27 E-value=0.097 Score=49.11 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=30.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.++++|+|..|+|||||..++..+++.+.-.++-+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 468999999999999999999999887765555554
No 436
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.25 E-value=0.067 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.7
Q ss_pred EEEEccCCchhhHHHHHHHHH
Q 004772 412 VGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~ 432 (731)
|+|+|.+|+|||||+..++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999877
No 437
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.22 E-value=0.098 Score=58.80 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=27.1
Q ss_pred HhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 400 SLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 400 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.+....+++.+|+|.|++|+||||||+.++..+
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3343344568899999999999999999998764
No 438
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.21 E-value=0.1 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKC 441 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 441 (731)
.+..|.++||+|+||||..+.+...+...+....
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppY 51 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPY 51 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCe
Confidence 3667888999999999999999988877765433
No 439
>PRK04182 cytidylate kinase; Provisional
Probab=93.18 E-value=0.072 Score=51.22 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.8
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998863
No 440
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.14 E-value=0.42 Score=50.13 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=50.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccC--cceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDF--QGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
+.+.|+|..|+||||+++.++..+.... ..++-+.+..+..... .... .+.. ........+.++..|+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~------~~~v-~~~~---~~~~~~~~~~l~~aLR 202 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAA------PNVV-QLRT---SDDAISMTRLLKATLR 202 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCC------CCEE-EEEe---cCCCCCHHHHHHHHhc
Confidence 4677999999999999999998875532 2333333222211000 0000 0000 0111146778888999
Q ss_pred CCCcEEEEeccCCch
Q 004772 488 QRKVLIVLHDVDDNS 502 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~ 502 (731)
..+=.||+..+...+
T Consensus 203 ~~pD~iivGEiR~~e 217 (299)
T TIGR02782 203 LRPDRIIVGEVRGGE 217 (299)
T ss_pred CCCCEEEEeccCCHH
Confidence 999999999998764
No 441
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.13 E-value=0.072 Score=51.73 Aligned_cols=21 Identities=29% Similarity=0.086 Sum_probs=18.5
Q ss_pred EEEEEccCCchhhHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~ 431 (731)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999873
No 442
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=93.10 E-value=0.39 Score=57.00 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+++.|.|.+|.||||+++.+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 578899999999999999998766543
No 443
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.16 Score=53.55 Aligned_cols=29 Identities=28% Similarity=0.388 Sum_probs=24.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.|-|..+|++|.|||-.|++++.+-.-+|
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDY 412 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDY 412 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCce
Confidence 67789999999999999999988744333
No 444
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.09 E-value=0.14 Score=55.52 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=26.7
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcce
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGK 440 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 440 (731)
....+.|.|.||.|||+|.+++.+.++..-..+
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~ 53 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKV 53 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceE
Confidence 356789999999999999999998877654333
No 445
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.09 E-value=0.074 Score=52.52 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+++|+|++|+|||||++.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999988653
No 446
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.07 E-value=0.078 Score=50.83 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..|.|.|+.|.|||||++.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999998754
No 447
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.07 E-value=0.075 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+++.|+|++|+|||||++.+..+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 448
>PTZ00494 tuzin-like protein; Provisional
Probab=93.07 E-value=8.5 Score=41.97 Aligned_cols=163 Identities=11% Similarity=0.060 Sum_probs=91.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhc-CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLE-LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 460 (731)
+.....+|.|+.|-..+.+.|... ...+|++.++|.-|.||++|.+....+- --...|+..-+. .+.++
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VDVRg~-------EDtLr 436 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVDVGGT-------EDTLR 436 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEEecCC-------cchHH
Confidence 456678999999988888888643 4568999999999999999998776542 234566652211 22334
Q ss_pred HHHHhhhcCCcccCCCCcHHHHHH-------HHcCCCcEEEE--eccCCchhHhhhhc--CCCCCCCEEEEEeCChhhhh
Q 004772 461 EVISQVMGENIKIGTPTITPNIKK-------RLQQRKVLIVL--HDVDDNSKSFAVCL--DLFSPGSRIIITTRDKRLLY 529 (731)
Q Consensus 461 ~ll~~l~~~~~~~~~~~~~~~l~~-------~L~~k~~LLVL--Ddv~~~~~~l~~~~--~~~~~gs~IIiTTR~~~v~~ 529 (731)
.+...++-.+.+.-. ++.+.+.+ ...++.=+||| -+-.+......... ..-..-|+|++----+.+-.
T Consensus 437 sVVKALgV~nve~CG-DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCG-DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhc-cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhch
Confidence 455555544333221 12222222 12334334444 22222221111111 11123466776443222111
Q ss_pred ---hcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 530 ---KRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 530 ---~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
.+.....|-+++++.++|.++-.+..
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 12233578999999999998877665
No 449
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=93.07 E-value=7.8 Score=39.46 Aligned_cols=25 Identities=8% Similarity=-0.108 Sum_probs=21.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+....++|+.|+||.++|.+++..+
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~l 31 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSI 31 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHH
Confidence 5567899999999999999999764
No 450
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.03 E-value=0.2 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.1
Q ss_pred EEEEEccCCchhhHHHHHHHHHhccc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+|+|.|+.|+||||+++.++..+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999887543
No 451
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.02 E-value=0.22 Score=48.64 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=23.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..|+|.|..|+||||+++.+++.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999887653
No 452
>PLN02348 phosphoribulokinase
Probab=93.01 E-value=0.12 Score=55.46 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=26.3
Q ss_pred CCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 406 LGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 406 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.+.+.+|+|.|.+|+||||||+.+...+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345789999999999999999999988754
No 453
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.01 E-value=0.32 Score=53.64 Aligned_cols=92 Identities=15% Similarity=0.245 Sum_probs=51.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcC-C---cccCCCCc------
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGE-N---IKIGTPTI------ 478 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~---~~~~~~~~------ 478 (731)
-+.++|.|.+|+|||||+..++.....+...++.+..+++ ......++++.++..-... . ....+...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3568999999999999999998776655433333333322 2233445555554331100 0 00011101
Q ss_pred ---HHHHHHHH---cCCCcEEEEeccCCch
Q 004772 479 ---TPNIKKRL---QQRKVLIVLHDVDDNS 502 (731)
Q Consensus 479 ---~~~l~~~L---~~k~~LLVLDdv~~~~ 502 (731)
.-.+.+++ +++++||++|++-...
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 11244455 5689999999995443
No 454
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.99 E-value=0.13 Score=48.40 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=24.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
++++|+|..|+|||||+..+...+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999998876553
No 455
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.99 E-value=0.1 Score=54.28 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=26.3
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
|.|+|+|-||+||||+|..++..+...-..+.-+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4688999999999999999998776554333333
No 456
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.99 E-value=0.094 Score=53.06 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=22.0
Q ss_pred EEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 414 IWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 414 I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
|.|++|+||||++..+.+.+.......+.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v 30 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV 30 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEE
Confidence 689999999999999998776654444444
No 457
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.98 E-value=0.14 Score=45.71 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
....+|.+.|.=|.||||+++.++..+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345799999999999999999999864
No 458
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.67 Score=50.27 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=23.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
++-+.+.|++|.|||.|+++++-+....|
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcceE
Confidence 44567899999999999999998865444
No 459
>PRK06761 hypothetical protein; Provisional
Probab=92.96 E-value=0.11 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=24.1
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987654
No 460
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=92.96 E-value=0.72 Score=44.34 Aligned_cols=35 Identities=20% Similarity=0.079 Sum_probs=22.4
Q ss_pred EEEEEEccCCchhhHHHH-HHHHHhcccC-cceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIAS-VIFHQISGDF-QGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~-~~~~~~~~~f-~~~~~~~ 444 (731)
+.+.|.|..|.|||+.+. .+++...... ...+++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~ 61 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLV 61 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEe
Confidence 577899999999999444 4445444332 3344443
No 461
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.95 E-value=0.25 Score=52.44 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC------cceEEEe
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF------QGKCFMK 444 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 444 (731)
.+.++|..+-....++-|+|++|+|||+||.+++....... ..++|+.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 34444443333467899999999999999999987643221 3567776
No 462
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=92.95 E-value=0.32 Score=57.56 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=23.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+++.|.|.+|.||||+++.+...+...
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~ 365 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEEL 365 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 488999999999999999998766543
No 463
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.93 E-value=0.2 Score=52.59 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=30.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+++-|+|+.|+||||||..+..........++|+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 568999999999999999999987766666677876
No 464
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.91 E-value=0.083 Score=50.33 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.2
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+|+|.|+.|+||||+|+.+++++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998875
No 465
>PRK14531 adenylate kinase; Provisional
Probab=92.90 E-value=0.089 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=21.0
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|.|+|++|+||||+++.++..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998875
No 466
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=92.89 E-value=0.73 Score=45.37 Aligned_cols=245 Identities=16% Similarity=0.192 Sum_probs=139.5
Q ss_pred CCceeEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCC-CCCCccHHHHHHHhh--ccEEEEEeccCccCccccH
Q 004772 14 KSKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQ-KGDEISPAVSKAIET--SAVSIIIFSENYAYSTWCL 90 (731)
Q Consensus 14 ~~~~dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~-~g~~~~~~i~~~i~~--s~~~ivv~S~~~~~S~wc~ 90 (731)
+.++..=+||.+.|. ..++....-+..+|+.+|.|-.++-+ -|..+- .++.-|.+ .-+++...|.+|-..-|-.
T Consensus 4 ~~~~~~a~~f~~~d~--~~~~~~~n~~~~~~v~~~y~~~~~a~~~~~~~~-~~~~e~~q~~~~~~~~f~~~~~~r~~~~~ 80 (329)
T COG4916 4 NVQFEIALSFAGEDR--EYVDRVANLLREAGVTVFYDIFEEANLWGKNLY-DYLSEIYQDKALFTIMFISEHYSRKMWTN 80 (329)
T ss_pred chheeeeeeecCchH--HHHHHHHHHHHhhccEEEEeehhhhhhhhhHHH-HHHHHHHhhhhHHHhhhhhccccCcCCCc
Confidence 567788899999996 68888888899999999998432211 233333 22222332 3456778899999999999
Q ss_pred HHHHHHHH-hhhhcCCeeEeEEeecCccc-cccccCcHHHHHHhhhhcCCChhHHHHHHHHHHHhhcccccccCCCCCCH
Q 004772 91 DELVRILD-CKKRNGQTVVPVFYKVSPPA-VRKQRLSFGEAFVHHESNFSDKVQVQKWRDSLTQASNISGFYASRSFRND 168 (731)
Q Consensus 91 ~El~~~~~-~~~~~~~~v~Pify~v~p~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~~~ 168 (731)
-|+..+.. |..+....++|-.++..|-. |..-.|.- .+..+ ..+. ..+-.++.-+-+||.....
T Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i------s~~~~-~p~~---~~~~~kq~~~~Tg~sV~D~---- 146 (329)
T COG4916 81 HERQAMQARAFQEHQEYILPARFDETPIPSVLPTVGYI------SLRSK-TPEE---FVETIKQKLIATGRTVPDA---- 146 (329)
T ss_pred HHHHHHHHHHhhhccEEehhhhhccCCCCcceeeeeEE------EEEec-CchH---HHHHHHHHHHhcCCccCCc----
Confidence 99988877 44555667888877654411 11111110 00011 1111 1112222334567642211
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCCCCCCccccccCCCCCCcceeeEEEeccccccccChHHHHHHHHh--hcCccccccc
Q 004772 169 AELVEKIAEDISKKLKDMADPPNFPSSMASSSCLSSSFTAKCKYDVFLSFGGEETRTGIGSHLAAALR--RKQIELFIDD 246 (731)
Q Consensus 169 ~~~i~~iv~~v~~~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~dvFis~~~~D~~~~f~~~L~~~L~--~~g~~~~~d~ 246 (731)
-|-.+. -.+..+..+.. .+.++ ..-...+..||+=+||.|+- .+.++.+...++ ..-+..|.|.
T Consensus 147 -~lr~~L-----~t~~~ilL~~~--~~~~~----~~Vd~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~ 212 (329)
T COG4916 147 -SLRRDL-----FTFETILLREP--IHATV----TVVDSSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDL 212 (329)
T ss_pred -chhhhh-----hhccceeeccc--cccee----eeecccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeec
Confidence 010000 01111111111 11111 01113456799999999976 568999988887 4456788885
Q ss_pred cc--ccCCCCcccHHHHHHh--hhceEEEEEecCCCCCChhhHHHHHHH
Q 004772 247 EK--EANKGDEISPAVSDAI--ETSLILIVIFSKDYASSKWCLDELVKI 291 (731)
Q Consensus 247 ~~--~~~~g~~~~~~i~~ai--~~s~~~i~v~S~~y~~S~~c~~El~~~ 291 (731)
.. -+-+|+ + ..+..-+ ..|+..+|.+..+|-.-.||.-|...+
T Consensus 213 ~~~~~L~~~s-L-~~~L~~~Y~~rC~~~~VF~~~~Y~~K~~c~~E~~~~ 259 (329)
T COG4916 213 LVAHPLYPGS-L-VSTLDPGYDIRCVVTTVFNTGSYICKSTCHIEGLEG 259 (329)
T ss_pred hhhccccCcc-H-HHhcccccCceEEEEEEEeCCceEEeeeeccchhhc
Confidence 22 011232 1 1222222 589999999999999999999988654
No 467
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.85 E-value=0.12 Score=48.19 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=22.8
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
++++.|.+|+||||++..++..+...-
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g 27 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARG 27 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 378999999999999999998775543
No 468
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.85 E-value=0.086 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+.|+|++|+||||+|+.+++++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998863
No 469
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.84 E-value=0.51 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|.|+.|.|||||.+.++-..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987644
No 470
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.84 E-value=0.09 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.-+++|+|..|+|||||++.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 34899999999999999999874
No 471
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.81 E-value=0.33 Score=53.67 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=50.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC-cceEEEeecccccccccHHHHHHHHHHhhhc-C-C--cccCCCCc-----
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF-QGKCFMKNVGEESSKMGVIHVRDEVISQVMG-E-N--IKIGTPTI----- 478 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~-~--~~~~~~~~----- 478 (731)
-+.++|.|.+|+|||||+..++.....+. +.+++. .+++ ......++...+...-.. . . ....+...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45689999999999999999998776433 444443 2222 123344444444432110 0 0 00011111
Q ss_pred ----HHHHHHHH---cCCCcEEEEeccCCch
Q 004772 479 ----TPNIKKRL---QQRKVLIVLHDVDDNS 502 (731)
Q Consensus 479 ----~~~l~~~L---~~k~~LLVLDdv~~~~ 502 (731)
.-.+.+++ .++++||++||+-...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 11233444 3789999999995443
No 472
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.80 E-value=0.096 Score=50.92 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=47.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCc---ccCCCCcHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENI---KIGTPTITPNIKKR 485 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~---~~~~~~~~~~l~~~ 485 (731)
...++|+|+.|.|||||++.+...+... ...+.+.+..+...+. .... ++..... ........+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 4578999999999999999998766533 2333333211111000 0000 0000000 11122355667777
Q ss_pred HcCCCcEEEEeccCCch
Q 004772 486 LQQRKVLIVLHDVDDNS 502 (731)
Q Consensus 486 L~~k~~LLVLDdv~~~~ 502 (731)
++..+=.++++.+.+.+
T Consensus 97 lR~~pd~i~igEir~~e 113 (186)
T cd01130 97 LRMRPDRIIVGEVRGGE 113 (186)
T ss_pred hccCCCEEEEEccCcHH
Confidence 77778888888887754
No 473
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.80 E-value=0.36 Score=54.98 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=36.7
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+..|.+.|..+-....++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33444555433334568889999999999999999987666667778876
No 474
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.79 E-value=0.2 Score=58.62 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
-..|+|+|..|+|||||++-+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998764
No 475
>PRK14532 adenylate kinase; Provisional
Probab=92.78 E-value=0.081 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEccCCchhhHHHHHHHHHh
Q 004772 412 VGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~ 433 (731)
|.|.|++|+||||+|+.++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 476
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.75 E-value=0.083 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.1
Q ss_pred EEEEccCCchhhHHHHHHHHHh
Q 004772 412 VGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~ 433 (731)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998874
No 477
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.75 E-value=0.21 Score=44.60 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=32.4
Q ss_pred cccchh----hHHHHHHhhhh-cCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 388 FVGLNS----RIEKIKSLLCL-ELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 388 fvGR~~----el~~L~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
++|..- .++.|.+.+.. .+..+-|+.++|.+|+|||.+++.+++.+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 555554 44444444443 24457889999999999999999998763
No 478
>PRK12338 hypothetical protein; Provisional
Probab=92.74 E-value=0.094 Score=54.90 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=23.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.+|.|.|.+|+||||+|..++.++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 5789999999999999999999875
No 479
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=92.72 E-value=1.4 Score=49.43 Aligned_cols=46 Identities=22% Similarity=0.071 Sum_probs=34.6
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.++|....+.++.+.+..-......+.|.|..|+||+++|+.+...
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 189 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYN 189 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHh
Confidence 4778777777777666543333456789999999999999998764
No 480
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.70 E-value=0.12 Score=52.45 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=26.3
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+|+|.|.+|+||||++..+.+.+...-...+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5899999999999999999987765433344443
No 481
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.69 E-value=0.13 Score=51.16 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=25.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
|+|+|.|-||+||||++..++..+...-..+.-+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 4688999999999999999998776543333333
No 482
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.67 E-value=0.096 Score=49.46 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.9
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
-|.++||.|.||||+.+.+++.+.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999999876665
No 483
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.66 E-value=0.16 Score=49.27 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.3
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
...++.|+|++|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987653
No 484
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.66 E-value=0.086 Score=51.23 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=21.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+++|+|+.|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3688999999999999999976543
No 485
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.64 E-value=0.24 Score=54.37 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=33.4
Q ss_pred HHHHHHHcCCCcEEEEeccCCch-----hHhhhhcCCCCCCCEEEEEeCChhhhhhc
Q 004772 480 PNIKKRLQQRKVLIVLHDVDDNS-----KSFAVCLDLFSPGSRIIITTRDKRLLYKR 531 (731)
Q Consensus 480 ~~l~~~L~~k~~LLVLDdv~~~~-----~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 531 (731)
.+|.+.|-.+|.||.||+--+.. .++...+..+..+ .++|++|..+.+...
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~v 285 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGV 285 (614)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhH
Confidence 34556667789999999874322 4455555444333 689999988766554
No 486
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.63 E-value=0.46 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++++|+.|+||||++..++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999988753
No 487
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.63 E-value=0.29 Score=49.60 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=29.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
...++.|.|.+|+|||+++.+++...... -..++|++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 35689999999999999999998776544 45666665
No 488
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.63 E-value=0.22 Score=53.66 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=50.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCc--ceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQ--GKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
..+.|+|+.|+||||++..++..+..... .++-+.+..+.... .... +.. ........+.......++..|+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~~~----~~~-~~q~evg~~~~~~~~~l~~aLR 223 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SPDD----LLP-PAQSQIGRDVDSFANGIRLALR 223 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CCce----eec-ccccccCCCccCHHHHHHHhhc
Confidence 46889999999999999999887654332 23333321111100 0000 000 0001111122236678889999
Q ss_pred CCCcEEEEeccCCch
Q 004772 488 QRKVLIVLHDVDDNS 502 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~ 502 (731)
..+=.|+++.+.+.+
T Consensus 224 ~~PD~I~vGEiRd~e 238 (372)
T TIGR02525 224 RAPKIIGVGEIRDLE 238 (372)
T ss_pred cCCCEEeeCCCCCHH
Confidence 999999999998765
No 489
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.62 E-value=0.11 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++.|+|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999876
No 490
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.60 E-value=0.14 Score=56.12 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=34.8
Q ss_pred CcccchhhHHHHHHhhhh-------cC-------CCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 387 GFVGLNSRIEKIKSLLCL-------EL-------GDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~-------~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.++|.+.-.+.|...+.. .. -....+.++|++|+|||+||+.++..+...|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 367888777776544311 00 0124688999999999999999998764333
No 491
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.58 E-value=0.33 Score=51.43 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=32.6
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc------CcceEEEe
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD------FQGKCFMK 444 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 444 (731)
+..+|..+-....++-|+|++|+|||+|+.+++...... -..++|+.
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 444454333346788999999999999999998765321 12567776
No 492
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.56 E-value=0.16 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.099 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHH
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
+.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 367899999999999999998764
No 493
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.55 E-value=0.17 Score=44.95 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=25.1
Q ss_pred EEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 412 VGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
+.+.|.||+||||++..++..+...-..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 68999999999999999998876554334433
No 494
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.53 E-value=0.14 Score=49.03 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=30.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...|.|-|++|+|||+|..+.+..++++|...+-..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 478999999999999999999999998886655543
No 495
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.53 E-value=0.49 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++++++|+.|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999997664
No 496
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.53 E-value=0.12 Score=48.00 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=22.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998887765
No 497
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.52 E-value=0.1 Score=46.29 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEccCCchhhHHHHHHHHH
Q 004772 412 VGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~ 432 (731)
|.|.|..|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999864
No 498
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.52 E-value=0.11 Score=45.23 Aligned_cols=22 Identities=41% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEEEccCCchhhHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~ 430 (731)
...++|.|+.|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999976
No 499
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.52 E-value=0.36 Score=54.94 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=36.0
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
+..|.+.|..+-....++.|.|.+|+|||+||.+++.....+ -..+.|+.
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 344555554343446799999999999999999998765544 45677775
No 500
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.51 E-value=0.097 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+|.++|++|+||||+|+.++.++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998875
Done!